Query 028241
Match_columns 211
No_of_seqs 143 out of 282
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 13:42:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028241.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028241hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zs9_C Golgi to ER traffic pro 4.0 5E+02 0.017 16.5 1.9 7 75-81 3-9 (38)
2 3cra_A Protein MAZG; tandem-re 3.7 8.6E+02 0.029 21.0 3.9 15 126-140 148-162 (265)
3 2iel_A Hypothetical protein TT 3.4 3.2E+02 0.011 21.8 0.7 11 83-93 120-130 (138)
4 2lsj_B DNA polymerase kappa; R 4.9 2.4E+02 0.0082 16.7 0.0 6 129-134 12-17 (26)
5 1tc3_C Protein (TC3 transposas 2.9 3.4E+02 0.012 15.0 0.3 7 105-111 28-34 (51)
6 2esy_A LUNG surfactant protein 2.8 3.6E+02 0.012 16.6 0.3 7 87-93 11-17 (32)
7 3ogk_Q JAZ1 incomplete degron 2.7 7E+02 0.024 14.0 1.5 9 128-136 9-17 (22)
8 4eu0_A PELD; C-DI-GMP, signali 2.4 5.8E+02 0.02 22.2 1.2 15 80-94 172-186 (298)
9 1t5i_A C_terminal domain of A 2.3 6.3E+02 0.022 18.8 1.3 14 97-110 114-127 (172)
10 1b0n_B Protein (SINI protein); 2.3 8.2E+02 0.028 16.4 1.7 12 81-92 17-28 (57)
No 1
>3zs9_C Golgi to ER traffic protein 2; hydrolase-transport protein complex, membrane protein, targe factor; HET: ADP; 2.10A {Saccharomyces cerevisiae}
Probab=3.97 E-value=5e+02 Score=16.54 Aligned_cols=7 Identities=29% Similarity=0.463 Sum_probs=3.2
Q ss_pred CCChHHH
Q 028241 75 LVTDTQK 81 (211)
Q Consensus 75 ~lSe~EK 81 (211)
+||+.|+
T Consensus 3 els~~ek 9 (38)
T 3zs9_C 3 ELTEAEK 9 (38)
T ss_dssp -CCHHHH
T ss_pred ccCHHHH
Confidence 4555554
No 2
>3cra_A Protein MAZG; tandem-repeat domain, hydrolase; 2.10A {Escherichia coli} PDB: 3crc_A*
Probab=3.73 E-value=8.6e+02 Score=20.99 Aligned_cols=15 Identities=20% Similarity=0.253 Sum_probs=8.3
Q ss_pred HHHHHHHhhhCCCCC
Q 028241 126 LKRKARAERFGLPVP 140 (211)
Q Consensus 126 eKlKkRAERFG~~~~ 140 (211)
.|+.+||.|.|+.-+
T Consensus 148 ~kiq~raa~vGfdw~ 162 (265)
T 3cra_A 148 QKIQKRCANVGFDWT 162 (265)
T ss_dssp HHHHHHHHTTTCSCS
T ss_pred HHHHHHHHhcCCCCC
Confidence 355566666665443
No 3
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4
Probab=3.43 E-value=3.2e+02 Score=21.83 Aligned_cols=11 Identities=64% Similarity=1.126 Sum_probs=8.8
Q ss_pred HHHHhhhCCCC
Q 028241 83 IRRAERFGMPV 93 (211)
Q Consensus 83 ~~RAeRFGip~ 93 (211)
..||.+||+|+
T Consensus 120 asrAr~~gvPV 130 (138)
T 2iel_A 120 HTQAERFGLPV 130 (138)
T ss_dssp HHHGGGGSSCE
T ss_pred HHHHHhcCCCE
Confidence 45888899986
No 4
>2lsj_B DNA polymerase kappa; REV1, RIR, POL kappa, translesion synthesis, TLS, CTD, prote binding-protein binding complex; HET: DNA; NMR {Mus musculus}
Probab=4.86 E-value=2.4e+02 Score=16.68 Aligned_cols=6 Identities=67% Similarity=0.938 Sum_probs=3.4
Q ss_pred HHHHhh
Q 028241 129 KARAER 134 (211)
Q Consensus 129 KkRAER 134 (211)
|||+||
T Consensus 12 KKRser 17 (26)
T 2lsj_B 12 KKRSER 17 (26)
Confidence 456655
No 5
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=2.92 E-value=3.4e+02 Score=15.01 Aligned_cols=7 Identities=0% Similarity=0.278 Sum_probs=5.2
Q ss_pred HhhhCCC
Q 028241 105 AERFGTG 111 (211)
Q Consensus 105 AeRFGl~ 111 (211)
|+.||++
T Consensus 28 A~~lgis 34 (51)
T 1tc3_C 28 SRKISRS 34 (51)
T ss_dssp HHHHTCC
T ss_pred HHHHCcC
Confidence 6778875
No 6
>2esy_A LUNG surfactant protein C; lipid binding protein; NMR {Synthetic}
Probab=2.76 E-value=3.6e+02 Score=16.58 Aligned_cols=7 Identities=57% Similarity=1.317 Sum_probs=4.5
Q ss_pred hhhCCCC
Q 028241 87 ERFGMPV 93 (211)
Q Consensus 87 eRFGip~ 93 (211)
-|||||-
T Consensus 11 grf~IPc 17 (32)
T 2esy_A 11 GRFGIPF 17 (32)
T ss_dssp SSSSCCS
T ss_pred ccccCcc
Confidence 3677764
No 7
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=2.72 E-value=7e+02 Score=14.02 Aligned_cols=9 Identities=22% Similarity=0.346 Sum_probs=4.3
Q ss_pred HHHHHhhhC
Q 028241 128 RKARAERFG 136 (211)
Q Consensus 128 lKkRAERFG 136 (211)
+.||.+|++
T Consensus 9 leKRk~R~~ 17 (22)
T 3ogk_Q 9 LEKRKDRVT 17 (26)
T ss_pred HHHHHHHhh
Confidence 344555544
No 8
>4eu0_A PELD; C-DI-GMP, signaling protein; HET: C2E; 1.70A {Pseudomonas aeruginosa} PDB: 4euv_A* 4etz_A* 4etx_A 4dmz_A 4dn0_A*
Probab=2.35 E-value=5.8e+02 Score=22.20 Aligned_cols=15 Identities=20% Similarity=0.483 Sum_probs=10.6
Q ss_pred HHHHHHHhhhCCCCC
Q 028241 80 QKKIRRAERFGMPVQ 94 (211)
Q Consensus 80 EKk~~RAeRFGip~~ 94 (211)
++...||+|||+|.+
T Consensus 172 ~r~~~~a~~~gi~ss 186 (298)
T 4eu0_A 172 KRSLLDARDHGLPAC 186 (298)
T ss_dssp HHHHHHHHHHCCCEE
T ss_pred HHHHHHHHhcCCCeE
Confidence 356667888888754
No 9
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=2.30 E-value=6.3e+02 Score=18.76 Aligned_cols=14 Identities=50% Similarity=0.601 Sum_probs=8.7
Q ss_pred HHHHHHHHHhhhCC
Q 028241 97 EEEKRNTRAERFGT 110 (211)
Q Consensus 97 e~eKkk~RAeRFGl 110 (211)
.-..+.-|+-|+|-
T Consensus 114 ~~~qr~GR~~R~g~ 127 (172)
T 1t5i_A 114 TYLHRVARAGRFGT 127 (172)
T ss_dssp HHHHHHHHHTGGGC
T ss_pred HHHHHhcccccCCC
Confidence 34566667777764
No 10
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=2.28 E-value=8.2e+02 Score=16.39 Aligned_cols=12 Identities=8% Similarity=0.141 Sum_probs=9.7
Q ss_pred HHHHHHhhhCCC
Q 028241 81 KKIRRAERFGMP 92 (211)
Q Consensus 81 Kk~~RAeRFGip 92 (211)
+...||+++|++
T Consensus 17 ~LI~~Ak~lGls 28 (57)
T 1b0n_B 17 ELMVEAKEANIS 28 (57)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHcCCC
Confidence 567799999986
Done!