BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028242
(211 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2X7B|A Chain A, Crystal Structure Of The N-Terminal Acetylase Ard1 From
Sulfolobus Solfataricus P2
Length = 168
Score = 90.5 bits (223), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 84/157 (53%), Gaps = 10/157 (6%)
Query: 3 CIRKATVDDLLAMQACNLFCLPENYQMKYYFYHILSWPQLLYVAEDYNGRIVGYVLAKME 62
+R A +DD+ + N LPENY ++ H+ + +VA N +VGY++ ++E
Sbjct: 14 TLRNARMDDIDQIIKINRLTLPENYPYYFFVEHLKEYGLAFFVAIVDNS-VVGYIMPRIE 72
Query: 63 EESNECH--------GHITSLAVLRTHRKLGLATKLMNAAQSAMEQVFGAEYVSLHVRKS 114
+ GH+ S+AVL +R+ G+AT L+ A+ +M+ + AE + L VR S
Sbjct: 73 WGFSNIKQLPSLVRKGHVVSIAVLEEYRRKGIATTLLEASMKSMKNDYNAEEIYLEVRVS 132
Query: 115 NRAAFNLYTETLGYKIHDVEAKYYADGEDAYDMRKQL 151
N A LY E L +K V YYADGEDAY M + L
Sbjct: 133 NYPAIALY-EKLNFKKVKVLKGYYADGEDAYLMARPL 168
>pdb|3TFY|A Chain A, Naa50p Amino-Terminal Acetyltransferase Bound To Substrate
Peptide Fragment And Coa
pdb|3TFY|B Chain B, Naa50p Amino-Terminal Acetyltransferase Bound To Substrate
Peptide Fragment And Coa
pdb|3TFY|C Chain C, Naa50p Amino-Terminal Acetyltransferase Bound To Substrate
Peptide Fragment And Coa
Length = 169
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 77/148 (52%), Gaps = 5/148 (3%)
Query: 7 ATVDDLLAMQACNLFCLPENYQMKYYFYHILSWPQLLYVAEDYNGRIVGYVLAKMEEESN 66
T ++ ++ N P +Y K+Y +L +L +A +N VG V +++ N
Sbjct: 11 VTPHNIKQLKRLNQVIFPVSYNDKFY-KDVLEVGELAKLAY-FNDIAVGAVCCRVDHSQN 68
Query: 67 ECHGHITSLAVLRTHRKLGLATKLMNAAQSAMEQVFGAEYVSLHVRKSNRAAFNLYTETL 126
+ +I +L L +R+LG+ TK++N + E+ + + LHV+ SN +A + Y +
Sbjct: 69 QKRLYIMTLGCLAPYRRLGIGTKMLNHVLNICEKDGTFDNIYLHVQISNESAIDFYRK-F 127
Query: 127 GYKIHDVEAKYYADGE--DAYDMRKQLK 152
G++I + + YY E DA+ ++K LK
Sbjct: 128 GFEIIETKKNYYKRIEPADAHVLQKNLK 155
>pdb|2OB0|A Chain A, Human Mak3 Homolog In Complex With Acetyl-Coa
pdb|2OB0|B Chain B, Human Mak3 Homolog In Complex With Acetyl-Coa
pdb|2OB0|C Chain C, Human Mak3 Homolog In Complex With Acetyl-Coa
pdb|2PSW|A Chain A, Human Mak3 Homolog In Complex With Coa
pdb|2PSW|B Chain B, Human Mak3 Homolog In Complex With Coa
pdb|2PSW|C Chain C, Human Mak3 Homolog In Complex With Coa
Length = 170
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 76/148 (51%), Gaps = 5/148 (3%)
Query: 7 ATVDDLLAMQACNLFCLPENYQMKYYFYHILSWPQLLYVAEDYNGRIVGYVLAKMEEESN 66
T ++ ++ N P +Y K+Y +L +L +A +N VG V +++ N
Sbjct: 12 VTPHNIKQLKRLNQVIFPVSYNDKFY-KDVLEVGELAKLAY-FNDIAVGAVCCRVDHSQN 69
Query: 67 ECHGHITSLAVLRTHRKLGLATKLMNAAQSAMEQVFGAEYVSLHVRKSNRAAFNLYTETL 126
+ +I +L L +R+LG+ TK +N + E+ + + LHV+ SN +A + Y +
Sbjct: 70 QKRLYIXTLGCLAPYRRLGIGTKXLNHVLNICEKDGTFDNIYLHVQISNESAIDFYRK-F 128
Query: 127 GYKIHDVEAKYYADGE--DAYDMRKQLK 152
G++I + + YY E DA+ ++K LK
Sbjct: 129 GFEIIETKKNYYKRIEPADAHVLQKNLK 156
>pdb|1BO4|A Chain A, Crystal Structure Of A Gcn5-Related N-Acetyltransferase:
Serratia Marescens Aminoglycoside 3-N-Acetyltransferase
pdb|1BO4|B Chain B, Crystal Structure Of A Gcn5-Related N-Acetyltransferase:
Serratia Marescens Aminoglycoside 3-N-Acetyltransferase
Length = 168
Score = 34.7 bits (78), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 51 GRIVGYVLAKMEEESNECHGHITSLAVLRTHRKLGLATKLMNAAQSAMEQVFGAEYVSLH 110
G + YVL K E+ +E + I LAV HR+ G+AT L+N + GA + +
Sbjct: 89 GALAAYVLPKFEQPRSEIY--IYDLAVSGEHRRQGIATALINLLKHE-ANALGAYVIYVQ 145
Query: 111 VRKSNRAAFNLYTE 124
+ A LYT+
Sbjct: 146 ADYGDDPAVALYTK 159
>pdb|3PGP|A Chain A, Crystal Structure Of Pa4794 - Gnat Superfamily Protein In
Complex With Accoa
Length = 162
Score = 30.4 bits (67), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 58/131 (44%), Gaps = 15/131 (11%)
Query: 23 LPENYQMKYYFYHILSWP----QLLY-VAED-------YNGRIVGYVLAKMEEESNECHG 70
P++ +Y Y WP QL +AE ++G+++G+ + + C
Sbjct: 21 FPQDRDELFYCYPKAIWPFSVAQLAAAIAERRGSTVAVHDGQVLGFANFYQWQHGDFCA- 79
Query: 71 HITSLAVLRTHRKLGLATKLMNAAQSAMEQVFGAEYVSLHVRKSNRAAFNLYTETLGYKI 130
+ ++ V R LG+A L+ ++ + + A + + +N A LYT+ LGY+
Sbjct: 80 -LGNMMVAPAARGLGVARYLIGVMENLAREQYKARLMKISCFNANAAGLLLYTQ-LGYQP 137
Query: 131 HDVEAKYYADG 141
+ ++ DG
Sbjct: 138 RAIAERHDPDG 148
>pdb|3KKW|A Chain A, Crystal Structure Of His-Tagged Form Of Pa4794 Protein
Length = 182
Score = 30.4 bits (67), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 58/131 (44%), Gaps = 15/131 (11%)
Query: 23 LPENYQMKYYFYHILSWP----QLLY-VAED-------YNGRIVGYVLAKMEEESNECHG 70
P++ +Y Y WP QL +AE ++G+++G+ + + C
Sbjct: 41 FPQDRDELFYCYPKAIWPFSVAQLAAAIAERRGSTVAVHDGQVLGFANFYQWQHGDFCA- 99
Query: 71 HITSLAVLRTHRKLGLATKLMNAAQSAMEQVFGAEYVSLHVRKSNRAAFNLYTETLGYKI 130
+ ++ V R LG+A L+ ++ + + A + + +N A LYT+ LGY+
Sbjct: 100 -LGNMMVAPAARGLGVARYLIGVMENLAREQYKARLMKISCFNANAAGLLLYTQ-LGYQP 157
Query: 131 HDVEAKYYADG 141
+ ++ DG
Sbjct: 158 RAIAERHDPDG 168
>pdb|2I6C|A Chain A, Crystal Structure Of Putative Acetyltransferase (Gnat
Family) From Pseudomonas Aeruginosa Pao1
Length = 160
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 56/131 (42%), Gaps = 15/131 (11%)
Query: 23 LPENYQMKYYFYHILSWP----QLLY-VAED-------YNGRIVGYVLAKMEEESNECHG 70
P++ +Y Y WP QL +AE ++G+++G+ + + C
Sbjct: 19 FPQDRDELFYCYPKAIWPFSVAQLAAAIAERRGSTVAVHDGQVLGFANFYQWQHGDFCA- 77
Query: 71 HITSLAVLRTHRKLGLATKLMNAAQSAMEQVFGAEYVSLHVRKSNRAAFNLYTETLGYKI 130
+ + V R LG+A L+ ++ + + A + +N A LYT+ LGY+
Sbjct: 78 -LGNXXVAPAARGLGVARYLIGVXENLAREQYKARLXKISCFNANAAGLLLYTQ-LGYQP 135
Query: 131 HDVEAKYYADG 141
+ ++ DG
Sbjct: 136 RAIAERHDPDG 146
>pdb|1WK4|A Chain A, Crystal Structure Of Ttk003001606
pdb|1WK4|B Chain B, Crystal Structure Of Ttk003001606
pdb|1WK4|C Chain C, Crystal Structure Of Ttk003001606
pdb|2CY2|A Chain A, Crystal Structure Of Ttha1209 In Complex With Acetyl
Coenzyme A
Length = 174
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 38 SWPQLLYVAEDYNGRIVGYVLAKMEEESNECHGHITSLA---VLRTHRKLGLATKLMN 92
+WP L+VAE +G +VG+ A + ++ G+ L VL T ++ GL L +
Sbjct: 55 TWPGRLFVAESESGEVVGFA-AFGPDRASGFPGYTAELWAIYVLPTWQRKGLGRALFH 111
>pdb|1UFH|A Chain A, Structure Of Putative Acetyltransferase, Yycn Protein Of
Bacillus Subtilis
pdb|1UFH|B Chain B, Structure Of Putative Acetyltransferase, Yycn Protein Of
Bacillus Subtilis
Length = 180
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 53 IVGYVLAKMEEESNECHGHITSLAVLRTHRKLGLATKLMNAAQSAMEQVFGAEYVSLHVR 112
IVG++ E E + I + +R G A K AA + G +SLHV
Sbjct: 96 IVGWLWIHAEPEHPQQEAFIYDFGLYEPYRGKGYA-KQALAALDQAARSMGIRKLSLHVF 154
Query: 113 KSNRAAFNLYTETLGYKIHDV 133
N+ A LY +T G++ DV
Sbjct: 155 AHNQTARKLYEQT-GFQETDV 174
>pdb|1ON0|A Chain A, Crystal Structure Of Putative Acetyltransferase (yycn)
From Bacillus Subtilis, Northeast Structural Genomics
Consortium Target Sr144
pdb|1ON0|B Chain B, Crystal Structure Of Putative Acetyltransferase (yycn)
From Bacillus Subtilis, Northeast Structural Genomics
Consortium Target Sr144
pdb|1ON0|C Chain C, Crystal Structure Of Putative Acetyltransferase (yycn)
From Bacillus Subtilis, Northeast Structural Genomics
Consortium Target Sr144
pdb|1ON0|D Chain D, Crystal Structure Of Putative Acetyltransferase (yycn)
From Bacillus Subtilis, Northeast Structural Genomics
Consortium Target Sr144
Length = 158
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 53 IVGYVLAKMEEESNECHGHITSLAVLRTHRKLGLATKLMNAAQSAMEQVFGAEYVSLHVR 112
IVG++ E E + I + +R G A K AA + G +SLHV
Sbjct: 72 IVGWLWIHAEPEHPQQEAFIYDFGLYEPYRGKGYA-KQALAALDQAARSXGIRKLSLHVF 130
Query: 113 KSNRAAFNLYTETLGYKIHDV 133
N+ A LY +T G++ DV
Sbjct: 131 AHNQTARKLYEQT-GFQETDV 150
>pdb|2E3X|C Chain C, Crystal Structure Of Russell's Viper Venom
Metalloproteinase
Length = 122
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 92 NAAQSAMEQVFGAEYVSLHVRKSNRAAFNLYTETLGY 128
+A + EQ G+ VSLH R+ + NL +E L Y
Sbjct: 26 DAEKFCTEQKKGSHLVSLHSREEEKFVVNLISENLEY 62
>pdb|1U6M|A Chain A, The Crystal Structure Of Acetyltransferase
pdb|1U6M|B Chain B, The Crystal Structure Of Acetyltransferase
pdb|1U6M|C Chain C, The Crystal Structure Of Acetyltransferase
pdb|1U6M|D Chain D, The Crystal Structure Of Acetyltransferase
Length = 199
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 61 MEEESNECHGHITSLAVLRTHRKLGLATKLMNAAQSAMEQVFGAEYVSLHVRKSNRAAFN 120
+EEE+ ++ +++V R +G+ +KL++A + + G + + L+V N A
Sbjct: 104 IEEETLPNEWYLDTISVDERFRGMGIGSKLLDALPE-VAKASGKQALGLNVDFDNPGARK 162
Query: 121 LYTETLGYK 129
LY + G+K
Sbjct: 163 LYA-SKGFK 170
>pdb|3UDF|A Chain A, Crystal Structure Of Apo Pbp1a From Acinetobacter
Baumannii
pdb|3UDF|B Chain B, Crystal Structure Of Apo Pbp1a From Acinetobacter
Baumannii
pdb|3UDI|A Chain A, Crystal Structure Of Acinetobacter Baumannii Pbp1a In
Complex With Penicillin G
pdb|3UDI|B Chain B, Crystal Structure Of Acinetobacter Baumannii Pbp1a In
Complex With Penicillin G
pdb|3UDX|A Chain A, Crystal Structure Of Acinetobacter Baumannii Pbp1a In
Complex With Imipenem
pdb|3UDX|B Chain B, Crystal Structure Of Acinetobacter Baumannii Pbp1a In
Complex With Imipenem
pdb|3UE0|A Chain A, Crystal Structure Of Acinetobacter Baumannii Pbp1a In
Complex With Aztreonam
pdb|3UE0|B Chain B, Crystal Structure Of Acinetobacter Baumannii Pbp1a In
Complex With Aztreonam
pdb|3UE1|A Chain A, Crystal Strucuture Of Acinetobacter Baumanni Pbp1a In
Complex With Mc- 1
pdb|3UE1|B Chain B, Crystal Strucuture Of Acinetobacter Baumanni Pbp1a In
Complex With Mc- 1
Length = 731
Score = 27.7 bits (60), Expect = 5.4, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 84 LGLATKLMNAAQSAMEQVFGAEYVSLHVRKSNRAAFNLYTETLGYKIHDVEAKYYADGED 143
L + + +N ++ +E V ++ + + +YT T+ K + K DG +
Sbjct: 223 LNMPNRDLNNIHPYAGEMVRSELVKHFGEQAIDSGYKVYT-TINAKRQAIAEKAVQDGLE 281
Query: 144 AYDMRKQLKGKQSH 157
AYD R +G ++H
Sbjct: 282 AYDRRHGWRGAEAH 295
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.132 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,865,689
Number of Sequences: 62578
Number of extensions: 168528
Number of successful extensions: 358
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 352
Number of HSP's gapped (non-prelim): 17
length of query: 211
length of database: 14,973,337
effective HSP length: 95
effective length of query: 116
effective length of database: 9,028,427
effective search space: 1047297532
effective search space used: 1047297532
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)