BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028243
         (211 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1UF4|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
          Amino Acid Amidohydrolase
 pdb|1UF4|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
          Amino Acid Amidohydrolase
 pdb|1UF5|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
          Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
          Methionine
 pdb|1UF5|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
          Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
          Methionine
 pdb|1UF7|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
          Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
          Valine
 pdb|1UF7|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
          Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
          Valine
 pdb|1UF8|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
          Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
          Phenylalanine
 pdb|1UF8|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
          Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
          Phenylalanine
          Length = 303

 Score = 29.6 bits (65), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 8/61 (13%)

Query: 2  VITCLLEMVLESRYKASHFIVKSFPSLGILFSDNFFRHILYFQVCQMLRIVTFYSTQLPG 61
          V+  LL+M+ ++  + ++FIV  FP L +     FF     +       + +FY T++PG
Sbjct: 23 VVVRLLDMLTKAASRGANFIV--FPELALT---TFFPR---WHFTDEAELDSFYETEMPG 74

Query: 62 P 62
          P
Sbjct: 75 P 75


>pdb|1ERZ|A Chain A, Crystal Structure Of N-Carbamyl-D-Amino Acid
          Amidohydrolase With A Novel Catalytic Framework Common
          To Amidohydrolases
 pdb|1ERZ|B Chain B, Crystal Structure Of N-Carbamyl-D-Amino Acid
          Amidohydrolase With A Novel Catalytic Framework Common
          To Amidohydrolases
          Length = 303

 Score = 29.6 bits (65), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 8/61 (13%)

Query: 2  VITCLLEMVLESRYKASHFIVKSFPSLGILFSDNFFRHILYFQVCQMLRIVTFYSTQLPG 61
          V+  LL+M+ ++  + ++FIV  FP L +     FF     +       + +FY T++PG
Sbjct: 23 VVVRLLDMLTKAASRGANFIV--FPELALT---TFFPR---WHFTDEAELDSFYETEMPG 74

Query: 62 P 62
          P
Sbjct: 75 P 75


>pdb|2W61|A Chain A, Saccharomyces Cerevisiae Gas2p Apostructure (E176q Mutant)
          Length = 555

 Score = 28.5 bits (62), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 162 VFFINKKLPELPDRSNASASLQFLP 186
           V+  N+KLPE PDRS  +   + LP
Sbjct: 374 VWEANEKLPETPDRSKCACLDEILP 398


>pdb|2W62|A Chain A, Saccharomyces Cerevisiae Gas2p In Complex With
           Laminaripentaose
 pdb|2W63|A Chain A, Saccharomyces Cerevisiae Gas2p In Complex With
           Laminaritriose And Laminaritetraose
          Length = 555

 Score = 28.5 bits (62), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 162 VFFINKKLPELPDRSNASASLQFLP 186
           V+  N+KLPE PDRS  +   + LP
Sbjct: 374 VWEANEKLPETPDRSKCACLDEILP 398


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.142    0.435 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,830,252
Number of Sequences: 62578
Number of extensions: 202839
Number of successful extensions: 463
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 461
Number of HSP's gapped (non-prelim): 4
length of query: 211
length of database: 14,973,337
effective HSP length: 95
effective length of query: 116
effective length of database: 9,028,427
effective search space: 1047297532
effective search space used: 1047297532
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (23.5 bits)