Query 028244
Match_columns 211
No_of_seqs 144 out of 1147
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 08:30:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028244.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028244hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03145 Protein phosphatase 2 100.0 6E-38 1.3E-42 269.6 22.4 189 4-203 123-340 (365)
2 KOG0697 Protein phosphatase 1B 100.0 1.3E-34 2.7E-39 233.3 17.0 185 3-198 72-296 (379)
3 KOG0698 Serine/threonine prote 100.0 3.9E-33 8.5E-38 237.9 21.6 173 17-200 112-311 (330)
4 COG0631 PTC1 Serine/threonine 100.0 1.3E-33 2.8E-38 233.8 17.4 174 2-196 60-255 (262)
5 PTZ00224 protein phosphatase 2 100.0 5.4E-33 1.2E-37 239.8 20.6 161 21-196 84-274 (381)
6 PF00481 PP2C: Protein phospha 100.0 1.7E-33 3.7E-38 232.2 11.9 157 18-185 70-254 (254)
7 cd00143 PP2Cc Serine/threonine 100.0 8.7E-30 1.9E-34 208.3 21.0 166 15-192 67-254 (254)
8 smart00332 PP2Cc Serine/threon 100.0 2.5E-29 5.3E-34 206.2 20.5 162 17-190 72-255 (255)
9 KOG0699 Serine/threonine prote 100.0 2.1E-29 4.5E-34 209.6 14.1 146 39-195 325-505 (542)
10 PRK14559 putative protein seri 100.0 8.4E-29 1.8E-33 224.9 18.4 161 20-196 455-638 (645)
11 KOG0700 Protein phosphatase 2C 99.9 8.8E-27 1.9E-31 197.1 13.3 154 16-180 166-378 (390)
12 KOG1323 Serine/threonine phosp 99.9 1.4E-24 3.1E-29 179.2 16.6 166 19-195 220-489 (493)
13 KOG1379 Serine/threonine prote 99.8 4.4E-18 9.5E-23 140.3 15.1 158 15-192 143-330 (330)
14 KOG0618 Serine/threonine phosp 99.8 5.6E-18 1.2E-22 155.7 11.3 156 23-196 591-775 (1081)
15 smart00331 PP2C_SIG Sigma fact 99.5 4.9E-13 1.1E-17 105.5 15.1 124 23-177 66-192 (193)
16 PF13672 PP2C_2: Protein phosp 99.4 2.3E-13 5.1E-18 108.9 6.8 101 40-149 93-196 (212)
17 TIGR02865 spore_II_E stage II 99.4 1.1E-11 2.3E-16 116.4 16.4 137 24-192 617-763 (764)
18 PF07228 SpoIIE: Stage II spor 99.4 8E-11 1.7E-15 92.6 16.6 143 23-193 40-193 (193)
19 COG2208 RsbU Serine phosphatas 98.2 0.00015 3.2E-09 63.1 16.3 137 25-193 214-366 (367)
20 PF09436 DUF2016: Domain of un 69.4 3.2 6.9E-05 27.4 1.5 20 117-136 23-42 (72)
21 PF06972 DUF1296: Protein of u 54.9 25 0.00054 22.3 3.5 26 135-174 19-44 (60)
22 PF01436 NHL: NHL repeat; Int 44.5 46 0.001 17.2 3.5 22 50-71 7-28 (28)
23 COG1539 FolB Dihydroneopterin 43.6 1.3E+02 0.0027 21.9 7.0 64 125-199 42-105 (121)
24 cd00534 DHNA_DHNTPE Dihydroneo 38.7 1.3E+02 0.0028 21.3 5.8 59 126-195 42-100 (118)
25 smart00331 PP2C_SIG Sigma fact 37.4 1.8E+02 0.004 22.0 9.3 76 111-193 19-95 (193)
26 PF08148 DSHCT: DSHCT (NUC185) 34.9 76 0.0016 24.6 4.4 28 128-155 30-57 (180)
27 COG3700 AphA Acid phosphatase 32.6 97 0.0021 24.5 4.5 53 121-180 71-130 (237)
28 TIGR00525 folB dihydroneopteri 31.2 1.9E+02 0.0041 20.4 6.4 59 126-193 41-100 (116)
29 PF05785 CNF1: Rho-activating 27.8 74 0.0016 26.8 3.3 25 41-66 129-153 (281)
30 TIGR03735 PRTRC_A PRTRC system 26.4 41 0.00089 26.7 1.5 60 117-179 22-90 (192)
31 PF13649 Methyltransf_25: Meth 26.4 1.2E+02 0.0026 20.4 3.9 26 124-149 70-95 (101)
32 COG2168 DsrH Uncharacterized c 26.1 40 0.00086 23.6 1.2 28 119-146 23-50 (96)
33 PF02152 FolB: Dihydroneopteri 25.5 2.3E+02 0.0049 19.7 5.2 56 128-192 41-97 (113)
34 TIGR02276 beta_rpt_yvtn 40-res 25.1 1.2E+02 0.0025 16.5 3.0 19 55-73 3-21 (42)
35 PRK11593 folB bifunctional dih 24.4 2.6E+02 0.0057 19.8 6.6 59 125-195 41-99 (119)
36 PRK15322 invasion protein OrgB 24.2 2.8E+02 0.006 22.3 5.7 48 121-178 147-194 (210)
37 COG3315 O-Methyltransferase in 23.4 2.4E+02 0.0051 23.9 5.7 83 65-149 104-197 (297)
38 PF14014 DUF4230: Protein of u 21.8 3.3E+02 0.0072 20.0 5.8 41 107-147 75-115 (157)
39 PRK03072 heat shock protein Ht 20.7 1.5E+02 0.0033 24.8 4.0 29 123-151 110-138 (288)
40 PRK05457 heat shock protein Ht 20.5 1.9E+02 0.0042 24.2 4.6 30 122-151 116-145 (284)
No 1
>PLN03145 Protein phosphatase 2c; Provisional
Probab=100.00 E-value=6e-38 Score=269.56 Aligned_cols=189 Identities=32% Similarity=0.463 Sum_probs=159.2
Q ss_pred HHhhhhh-CCCchHHHHHHHHHHHHHHHHHHHhhcC--CCCCCCCceeEEEEEeCCeEEEEeccccceEEEeCCccccCC
Q 028244 4 EEWGREA-GNDGWHRRWEAALCRSYERADDVFKDNS--LAPYSVGTTALVAILSPCQIIASNCGDSRVVLSRGKQAIPLT 80 (211)
Q Consensus 4 ~~l~~~~-~~~~~~~~~~~~l~~a~~~~~~~l~~~~--~~~~~~GtT~~~~~i~~~~~~~anvGDSr~~l~~~~~~~~lt 80 (211)
++|.+.+ ....+...+.++|.++|.++|+.+.... .....+|||++++++.++++|++|+||||+|+++++++++||
T Consensus 123 ~~l~~~i~~~~~~~~~~~~al~~af~~~d~~~~~~~~~~~~~~~GTTavv~li~~~~l~vaNvGDSRayl~r~g~~~~LT 202 (365)
T PLN03145 123 YHLPRFIVEDEDFPREIEKVVSSAFLQTDTAFAEACSLDASLASGTTALAALVVGRSLVVANAGDCRAVLCRRGKAIEMS 202 (365)
T ss_pred HHHHHHHHhhhccchhHHHHHHHHHHHHhHHHHhhhccccCCCCcCcEEEEEEECCeEEEEecCCceEEEEcCCeEEEec
Confidence 3444444 2334455788899999999999998754 234569999999999999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHh-------------------hCCCCCCC-------ccccCCcEEEEEecCCCeEEEEEcCCcccc
Q 028244 81 VDHKLDREDEVARITN-------------------GGDHDLKP-------WVIAEPEVTFMTRSEDDEFLILASDGLWDV 134 (211)
Q Consensus 81 ~dH~~~~~~e~~ri~~-------------------lG~~~~~~-------~v~~~p~i~~~~~~~~~~~lil~SDGl~d~ 134 (211)
.||++.++.|+.||.. |||+.+|. .+++.|++..+.+..+++||||||||||++
T Consensus 203 ~DH~~~~~~E~~RI~~~Gg~v~~g~v~g~l~vTRalGD~~~k~~k~~~~~~vs~ePdv~~~~l~~~D~fLILaSDGLwdv 282 (365)
T PLN03145 203 RDHKPMCSKERKRIEASGGYVYDGYLNGQLNVARALGDWHMEGMKGSDGGPLSAEPELMTTQLTEEDEFLIIGCDGIWDV 282 (365)
T ss_pred CCCCCCCHHHHHHHHHcCCceecceECCccccccccccccccccccccCCCcceEEEEEEEECCCCCEEEEEeCCccccC
Confidence 9999999999999885 78776642 477899999999988899999999999999
Q ss_pred CCHHHHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCCCceEEEEEEccCCCccCcccc
Q 028244 135 MSSDDAVKLARYELRRRRRLPEKGDTPSSPACGAAEELVKIAYDAFSTDNISVVIVDLKAPRIRSLQNT 203 (211)
Q Consensus 135 l~~~~i~~ii~~~~~~~~~~~~~~~~~~~~~~~~a~~L~~~A~~~~~~DNiTvivv~~~~~~~~~~~~~ 203 (211)
|+++++.+++.+.+.. ..+|..+|+.|++.|+.+++.||+|||||+|....+.....+
T Consensus 283 ls~ee~v~~i~~~l~~-----------~~~p~~aa~~Lv~~Al~rgs~DNITvIVV~l~~~~~~~~~~~ 340 (365)
T PLN03145 283 FRSQNAVDFARRRLQE-----------HNDPVMCSKELVDEALKRKSGDNLAVVVVCFQSQPPPNLVAP 340 (365)
T ss_pred cCHHHHHHHHHHHHhc-----------CCCHHHHHHHHHHHHHhCCCCCCEEEEEEEeecCCCcccccc
Confidence 9999999988877654 457899999999999999999999999999998654444333
No 2
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-34 Score=233.31 Aligned_cols=185 Identities=32% Similarity=0.482 Sum_probs=163.6
Q ss_pred HHHhhhhh-CCCchHH--------HHHHHHHHHHHHHHHHHhhcC---CCCCCCCceeEEEEEeCCeEEEEeccccceEE
Q 028244 3 AEEWGREA-GNDGWHR--------RWEAALCRSYERADDVFKDNS---LAPYSVGTTALVAILSPCQIIASNCGDSRVVL 70 (211)
Q Consensus 3 ~~~l~~~~-~~~~~~~--------~~~~~l~~a~~~~~~~l~~~~---~~~~~~GtT~~~~~i~~~~~~~anvGDSr~~l 70 (211)
+++|..++ ..++|.. ++..-|+..|+++++-+.... ....++|||++++++.+.++|++|+||||+++
T Consensus 72 ~~hLlehi~sse~F~~~~k~gsv~~~~~GIrtGFL~iDE~mr~~~~~~~~~drsGsTAVcv~vsp~h~y~~NcGDSRavl 151 (379)
T KOG0697|consen 72 AEHLLEHIISSEEFRGMTKNGSVENVEKGIRTGFLSIDEIMRTLSDISKGSDRSGSTAVCVFVSPTHIYIINCGDSRAVL 151 (379)
T ss_pred HHHHHHHhhhhHHHhhhccCCcHHHHHhhHhhcceeHHHHHhhhhhhhcccccCCceEEEEEecCceEEEEecCcchhhe
Confidence 34555554 4455544 788899999999999888765 44567999999999999999999999999999
Q ss_pred EeCCccccCCCCCCCCChHHHHHHHh-------------------hCCCCCCC---------ccccCCcEEEEEecCCCe
Q 028244 71 SRGKQAIPLTVDHKLDREDEVARITN-------------------GGDHDLKP---------WVIAEPEVTFMTRSEDDE 122 (211)
Q Consensus 71 ~~~~~~~~lt~dH~~~~~~e~~ri~~-------------------lG~~~~~~---------~v~~~p~i~~~~~~~~~~ 122 (211)
+|+|....-|+||+|..|.|++||.. +||+.||. .|+|+|++......+.|+
T Consensus 152 ~rng~~~f~TqDHKP~~p~EkeRIqnAGGSVMIqRvNGsLAVSRAlGDydyK~v~~kgp~eQlVSPEPev~~~~R~eede 231 (379)
T KOG0697|consen 152 CRNGEVVFSTQDHKPYLPKEKERIQNAGGSVMIQRVNGSLAVSRALGDYDYKNVPGKGPTEQLVSPEPEVYIIERSEEDE 231 (379)
T ss_pred ecCCceEEeccCCCCCChHHHHHHhcCCCeEEEEEecceeeeehhccCcccccCCCCCchhcccCCCCceEEeeccccCc
Confidence 99999999999999999999999988 99999883 699999999998889999
Q ss_pred EEEEEcCCccccCCHHHHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCCCceEEEEEEccCCCcc
Q 028244 123 FLILASDGLWDVMSSDDAVKLARYELRRRRRLPEKGDTPSSPACGAAEELVKIAYDAFSTDNISVVIVDLKAPRIR 198 (211)
Q Consensus 123 ~lil~SDGl~d~l~~~~i~~ii~~~~~~~~~~~~~~~~~~~~~~~~a~~L~~~A~~~~~~DNiTvivv~~~~~~~~ 198 (211)
||||||||+||+|+++++++++...+.= ..+...+|+.+++.++-+|+.||+|+|+|-|-+..+.
T Consensus 232 FivlACDGIwDVMtneelcefv~sRl~V-----------t~dL~~vcn~VvDtCLhKGSRDNMsivlvcfp~APkv 296 (379)
T KOG0697|consen 232 FIVLACDGIWDVMTNEELCEFVKSRLEV-----------TSDLEEVCNDVVDTCLHKGSRDNMSIVLVCFPGAPKV 296 (379)
T ss_pred EEEEEccchhhhcccHHHHHHHHhhhee-----------cccHHHHHHHHHHHHHhccCccCceEEEEecCCCCCC
Confidence 9999999999999999999999987654 5689999999999999999999999999999876543
No 3
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=3.9e-33 Score=237.90 Aligned_cols=173 Identities=45% Similarity=0.588 Sum_probs=154.7
Q ss_pred HHHHHHHHHHHH-HHHHHHhhcCCCCCCCCceeEEEEEeCC-eEEEEeccccceEEEeCC-ccccCCCCCCCCChHHHHH
Q 028244 17 RRWEAALCRSYE-RADDVFKDNSLAPYSVGTTALVAILSPC-QIIASNCGDSRVVLSRGK-QAIPLTVDHKLDREDEVAR 93 (211)
Q Consensus 17 ~~~~~~l~~a~~-~~~~~l~~~~~~~~~~GtT~~~~~i~~~-~~~~anvGDSr~~l~~~~-~~~~lt~dH~~~~~~e~~r 93 (211)
..+..++.++|. ++|..+.........+|||++++++.++ ++|+||+||||+++++.+ ..++||.||+|..+.|+.|
T Consensus 112 ~~~~~a~~~~F~~~~D~~~~~~~~~~~~~gstav~~vi~~~~~l~vaN~GDSRaVl~~~~~~a~~Ls~DHkP~~~~E~~R 191 (330)
T KOG0698|consen 112 QDVKDALRRAFLTKTDSEFLEKREDNRSGGSTAVVALIKKGRKLYVANVGDSRAVLSRKGGVAVQLSVDHKPDREDERER 191 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCcceeeeeeEecCCEEEEEEcCCCcEEEecCCCeeeeCCCCCCCCcHHHHHH
Confidence 468999999999 6999999763334678899988888865 999999999999999876 7999999999999999999
Q ss_pred HHh-----------------------hCCCCCC-CccccCCcEEEEEecCCCeEEEEEcCCccccCCHHHHHHHHHHHHH
Q 028244 94 ITN-----------------------GGDHDLK-PWVIAEPEVTFMTRSEDDEFLILASDGLWDVMSSDDAVKLARYELR 149 (211)
Q Consensus 94 i~~-----------------------lG~~~~~-~~v~~~p~i~~~~~~~~~~~lil~SDGl~d~l~~~~i~~ii~~~~~ 149 (211)
|.. |||..+| ++++++|++....+...++||||+||||||+++++++.++++..+.
T Consensus 192 I~~~GG~v~~~~~~~Rv~G~LavsRa~GD~~~k~~~v~a~Pei~~~~~~~~deFLiLasDGiwDv~s~qeav~~V~~~~~ 271 (330)
T KOG0698|consen 192 IEAAGGRVSNWGGVWRVNGVLAVSRAFGDVELKSQGVIAEPEIQQVKINSDDEFLILASDGIWDVVSNQEAVDLVRDELA 271 (330)
T ss_pred HHHcCCEEEEcCCcceEeceEEEeeecCCHHhcCCcEecCCceEEEEcCCCCcEEEEeCCchhcccChHHHHHHHHHHhh
Confidence 988 8999999 8899999999998899899999999999999999999999998762
Q ss_pred hccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCCCceEEEEEEccCCCccCc
Q 028244 150 RRRRLPEKGDTPSSPACGAAEELVKIAYDAFSTDNISVVIVDLKAPRIRSL 200 (211)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~a~~L~~~A~~~~~~DNiTvivv~~~~~~~~~~ 200 (211)
. ...+..++..|...|..+++.||+|||||.|........
T Consensus 272 ~-----------~~~~~~a~~~l~~~a~~~~s~DnitvvvV~l~~~~~~~~ 311 (330)
T KOG0698|consen 272 S-----------ISSPLAAAKLLATEALSRGSKDNITVVVVRLKSSPKSPS 311 (330)
T ss_pred c-----------cccHHHHHHHHHHHHhhcCCCCCeEEEEEEecCcccccc
Confidence 2 467899999999999999999999999999998864433
No 4
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-33 Score=233.81 Aligned_cols=174 Identities=31% Similarity=0.456 Sum_probs=147.5
Q ss_pred cHHHhhhhhCCC---chHHHHHHHHHHHHHHHHHHHhhcC---CCCCCCCceeEEEEEeCCeEEEEeccccceEEEeCCc
Q 028244 2 VAEEWGREAGND---GWHRRWEAALCRSYERADDVFKDNS---LAPYSVGTTALVAILSPCQIIASNCGDSRVVLSRGKQ 75 (211)
Q Consensus 2 l~~~l~~~~~~~---~~~~~~~~~l~~a~~~~~~~l~~~~---~~~~~~GtT~~~~~i~~~~~~~anvGDSr~~l~~~~~ 75 (211)
+++.|.+.+... .....+.+.|.+++..+|..+.... ....+||||++++++.++++|+|||||||+|++|++.
T Consensus 60 ~v~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~n~~i~~~~~~~~~~~~mgtTl~~~~~~~~~l~~a~vGDSR~yl~~~~~ 139 (262)
T COG0631 60 AVEALARLFDETNFNSLNESLEELLKEAILKANEAIAEEGQLNEDVRGMGTTLVLLLIRGNKLYVANVGDSRAYLLRDGE 139 (262)
T ss_pred HHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCceeEEEEEEECCeEEEEEccCCeEEEEcCCc
Confidence 455566665221 1112278999999999999999875 4668999999999999999999999999999999999
Q ss_pred cccCCCCCCCCChHHHHHHHh----------------hCCCCCCCccccCCcEEEEEecCCCeEEEEEcCCccccCCHHH
Q 028244 76 AIPLTVDHKLDREDEVARITN----------------GGDHDLKPWVIAEPEVTFMTRSEDDEFLILASDGLWDVMSSDD 139 (211)
Q Consensus 76 ~~~lt~dH~~~~~~e~~ri~~----------------lG~~~~~~~v~~~p~i~~~~~~~~~~~lil~SDGl~d~l~~~~ 139 (211)
+++||.||++.+..+..++.. ||+... ..|++....+.++ +|+||||||||+.+++++
T Consensus 140 ~~~lT~DH~~~~~~~~~~~~~~~~~~~~~~~~~ltralG~~~~-----~~p~~~~~~~~~~-d~llL~SDGl~d~v~~~~ 213 (262)
T COG0631 140 LKQLTEDHSLVNRLEQRGIITPEEARSHPRRNALTRALGDFDL-----LEPDITELELEPG-DFLLLCSDGLWDVVSDDE 213 (262)
T ss_pred eEEeccCCcHHHHHHHhcCCCHHHHHhCccchhhhhhcCCCcc-----cceeEEEEEcCCC-CEEEEECCCCccCcCHHH
Confidence 999999999987766666221 787542 4899999977777 699999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCCCceEEEEEEccCCC
Q 028244 140 AVKLARYELRRRRRLPEKGDTPSSPACGAAEELVKIAYDAFSTDNISVVIVDLKAPR 196 (211)
Q Consensus 140 i~~ii~~~~~~~~~~~~~~~~~~~~~~~~a~~L~~~A~~~~~~DNiTvivv~~~~~~ 196 (211)
+.+++.. ..+++.+++.|++.|+.+++.||+|+++|++....
T Consensus 214 i~~il~~---------------~~~~~~~~~~li~~a~~~g~~DNiT~ilv~~~~~~ 255 (262)
T COG0631 214 IVDILKN---------------SETPQEAADKLIELALEGGGPDNITVVLVRLNGEG 255 (262)
T ss_pred HHHHHhc---------------CCCHHHHHHHHHHHHHhcCCCCceEEEEEEeeccc
Confidence 9999985 47899999999999999999999999999998765
No 5
>PTZ00224 protein phosphatase 2C; Provisional
Probab=100.00 E-value=5.4e-33 Score=239.78 Aligned_cols=161 Identities=30% Similarity=0.414 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCceeEEEEEe-CCeEEEEeccccceEEEeCCccccCCCCCCCCChHHHHHHHh---
Q 028244 21 AALCRSYERADDVFKDNSLAPYSVGTTALVAILS-PCQIIASNCGDSRVVLSRGKQAIPLTVDHKLDREDEVARITN--- 96 (211)
Q Consensus 21 ~~l~~a~~~~~~~l~~~~~~~~~~GtT~~~~~i~-~~~~~~anvGDSr~~l~~~~~~~~lt~dH~~~~~~e~~ri~~--- 96 (211)
+.|.++|..+|+.+.+.. ..+|||++++++. ++++|++||||||+|++|+|++++||.||++.++.|+.||..
T Consensus 84 ~~l~~a~~~~d~~i~~~~---~~~GsTatv~lI~~~~~l~vaNVGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~gg 160 (381)
T PTZ00224 84 ERMEELCLEIDEEWMDSG---REGGSTGTFCVIMKDVHLQVGNVGDSRVLVCRDGKLVFATEDHKPNNPGERQRIEACGG 160 (381)
T ss_pred HHHHHHHHHHHHHHHhcc---cCCCCeEEEEEEEECCEEEEEEcccceEEEEECCEEEEcccCCCCCCHHHHhHHHHccC
Confidence 458889999999998753 2469999998886 579999999999999999999999999999999999988865
Q ss_pred ----------------hCCCCCC---------CccccCCcEEEEEecCCCeEEEEEcCCccc-cCCHHHHHHHHHHHHHh
Q 028244 97 ----------------GGDHDLK---------PWVIAEPEVTFMTRSEDDEFLILASDGLWD-VMSSDDAVKLARYELRR 150 (211)
Q Consensus 97 ----------------lG~~~~~---------~~v~~~p~i~~~~~~~~~~~lil~SDGl~d-~l~~~~i~~ii~~~~~~ 150 (211)
||+..+| +.+++.|++..+.+.+ +++|||||||||+ +++++++.+++.+.+..
T Consensus 161 ~v~~~Rv~G~l~vTRalGd~~~K~~~~~~~~~~~v~~~Pdi~~~~l~~-~D~llLaSDGL~d~~ls~eEi~~iv~~~l~~ 239 (381)
T PTZ00224 161 RVVSNRVDGDLAVSRAFGDRSFKVKGTGDYLEQKVIAVPDVTHLTCQS-NDFIILACDGVFEGNFSNEEVVAFVKEQLET 239 (381)
T ss_pred EeccccccCceeeecccCCcccccccccccccCcceeeeEEEEEECCC-CCEEEEECCCcCcCccCHHHHHHHHHHHHhc
Confidence 7876543 2466889999887664 5599999999999 89999999999865543
Q ss_pred ccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCCCceEEEEEEccCCC
Q 028244 151 RRRLPEKGDTPSSPACGAAEELVKIAYDAFSTDNISVVIVDLKAPR 196 (211)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~a~~L~~~A~~~~~~DNiTvivv~~~~~~ 196 (211)
..++..+|+.|++.|+.+|+.||+|||||++...+
T Consensus 240 -----------~~~~~~aA~~Lv~~A~~rGs~DNITvIvV~~~~~~ 274 (381)
T PTZ00224 240 -----------CDDLAVVAGRVCDEAIRRGSKDNISCLIVQLKDGA 274 (381)
T ss_pred -----------CCCHHHHHHHHHHHHHhcCCCCCEEEEEEEeeCCC
Confidence 35789999999999999999999999999998764
No 6
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=100.00 E-value=1.7e-33 Score=232.22 Aligned_cols=157 Identities=43% Similarity=0.586 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHH-HHHHHhhcC-C-CCCCCCceeEEEEEeCCeEEEEeccccceEEEeCCccc-cCCCCCCCCChHHHHH
Q 028244 18 RWEAALCRSYER-ADDVFKDNS-L-APYSVGTTALVAILSPCQIIASNCGDSRVVLSRGKQAI-PLTVDHKLDREDEVAR 93 (211)
Q Consensus 18 ~~~~~l~~a~~~-~~~~l~~~~-~-~~~~~GtT~~~~~i~~~~~~~anvGDSr~~l~~~~~~~-~lt~dH~~~~~~e~~r 93 (211)
.+.++|..+|.. ++..+.... . ....+|||++++++.++++|+||+||||+|+++.+... +||.||+|.++.|+.|
T Consensus 70 ~~~~al~~a~~~~~~~~~~~~~~~~~~~~~GsTa~v~li~~~~l~vanvGDSravl~~~~~~~~~Lt~dH~~~~~~E~~R 149 (254)
T PF00481_consen 70 DIEEALRQAFLAFTDESLYSDSENNESSKSGSTATVALIDGNKLYVANVGDSRAVLCRNGGIIKQLTRDHKPSNPDERER 149 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHTTSEEEEEEEEEETTEEEEEEESS-EEEEEETTEEEEESS---STTSHHHHHH
T ss_pred chhhcccceeeecccccccccccccccccccccccccccccceeEEEeeeeeeeeeeeccccccccccccccchhhccce
Confidence 688999999999 888888732 1 46789999999999999999999999999999999888 9999999999999999
Q ss_pred HHh--------------------hCCCCCCC----ccccCCcEEEEEecCCCeEEEEEcCCccccCCHHHHHHHHHHHHH
Q 028244 94 ITN--------------------GGDHDLKP----WVIAEPEVTFMTRSEDDEFLILASDGLWDVMSSDDAVKLARYELR 149 (211)
Q Consensus 94 i~~--------------------lG~~~~~~----~v~~~p~i~~~~~~~~~~~lil~SDGl~d~l~~~~i~~ii~~~~~ 149 (211)
|.. |||..+++ +|+++|++..+++.++++|||||||||||+++++++.+++.....
T Consensus 150 I~~~gg~v~~~~rv~g~l~~sRalGd~~~k~~~~~~v~~~P~i~~~~l~~~d~flvlaSDGlwd~l~~~ei~~~v~~~~~ 229 (254)
T PF00481_consen 150 IRKAGGRVSENGRVNGVLAVSRALGDFDLKPPGKPGVIAEPDISEVDLTPDDEFLVLASDGLWDVLSNEEIVDIVRESLN 229 (254)
T ss_dssp HHHTT-GEEETEEETTTBSSSB-EE-GGGTTCTSSSSB---EEEEEEEBTTEEEEEEE-HHHHTTSHHHHHHHHHHHHHH
T ss_pred eeccccccccchhhhhccccccccccccccccccceeeeecccccccccccceEEEEEcccccccCCHHHHHHHHHHHHh
Confidence 987 89998888 899999999999999988999999999999999999999998765
Q ss_pred hccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCCCce
Q 028244 150 RRRRLPEKGDTPSSPACGAAEELVKIAYDAFSTDNI 185 (211)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~a~~L~~~A~~~~~~DNi 185 (211)
. ..+|..+|+.|++.|+++|+.|||
T Consensus 230 ~-----------~~~~~~~a~~L~~~A~~~gs~DNi 254 (254)
T PF00481_consen 230 S-----------GRSPQEAAEKLVDEAIARGSKDNI 254 (254)
T ss_dssp H-----------HSHHHHHHHHHHHHHHHTTHHSHE
T ss_pred c-----------CCcHHHHHHHHHHHHHhcCCCCCC
Confidence 4 236899999999999999999997
No 7
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.97 E-value=8.7e-30 Score=208.31 Aligned_cols=166 Identities=46% Similarity=0.636 Sum_probs=144.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcC---CCCCCCCceeEEEEEeCCeEEEEeccccceEEEeCCccccCCCCCCCCChHHH
Q 028244 15 WHRRWEAALCRSYERADDVFKDNS---LAPYSVGTTALVAILSPCQIIASNCGDSRVVLSRGKQAIPLTVDHKLDREDEV 91 (211)
Q Consensus 15 ~~~~~~~~l~~a~~~~~~~l~~~~---~~~~~~GtT~~~~~i~~~~~~~anvGDSr~~l~~~~~~~~lt~dH~~~~~~e~ 91 (211)
....+...|.++|+.+|+.+.... .....+|||++++++.+++++++|+||||+|++++++++++|.||++.++.+.
T Consensus 67 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~~~~~~~~~~~lt~dh~~~~~~~~ 146 (254)
T cd00143 67 SEEDIEEALRKAFLRADEEILEEAQDEPDDARSGTTAVVALIRGNKLYVANVGDSRAVLCRNGEAVQLTKDHKPVNEEER 146 (254)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCcEEEEEEECCEEEEEEecCcEEEEEcCCceeEcCCCCCCcChHHH
Confidence 366788999999999999998875 24578999999999999999999999999999999999999999999987777
Q ss_pred HHHHh-------------------hCCCCCCCccccCCcEEEEEecCCCeEEEEEcCCccccCCHHHHHHHHHHHHHhcc
Q 028244 92 ARITN-------------------GGDHDLKPWVIAEPEVTFMTRSEDDEFLILASDGLWDVMSSDDAVKLARYELRRRR 152 (211)
Q Consensus 92 ~ri~~-------------------lG~~~~~~~v~~~p~i~~~~~~~~~~~lil~SDGl~d~l~~~~i~~ii~~~~~~~~ 152 (211)
.|+.. +|+..+++++.+.|++....+.+.+++|+|||||||++++++++.+++.....
T Consensus 147 ~~i~~~~~~~~~~~~~~~~~~t~~lG~~~~~~~~~~~~~~~~~~l~~~~d~ill~SDG~~~~l~~~~i~~~~~~~~~--- 223 (254)
T cd00143 147 ERIEKAGGRVSNGRVPGVLAVTRALGDFDLKPGVSAEPDVTVVKLTEDDDFLILASDGLWDVLSNQEAVDIVRSELA--- 223 (254)
T ss_pred HHHHHcCCcEEeCEEcCceeeccccCCccccCCEEcCCeEEEEEeCCCCcEEEEECCCCeeccChHHHHHHHHHHhc---
Confidence 77664 55555555578899999888756677999999999999999999999987411
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHhCCCCCceEEEEEEc
Q 028244 153 RLPEKGDTPSSPACGAAEELVKIAYDAFSTDNISVVIVDL 192 (211)
Q Consensus 153 ~~~~~~~~~~~~~~~~a~~L~~~A~~~~~~DNiTvivv~~ 192 (211)
..++.++|+.|++.|..+++.||+|+|++++
T Consensus 224 ---------~~~~~~~a~~l~~~a~~~~~~Dn~t~i~~~~ 254 (254)
T cd00143 224 ---------KEDLQEAAQELVDLALRRGSHDNITVVVVRL 254 (254)
T ss_pred ---------ccCHHHHHHHHHHHHHhCCCCCCEEEEEEeC
Confidence 0268999999999999999999999999975
No 8
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.97 E-value=2.5e-29 Score=206.24 Aligned_cols=162 Identities=43% Similarity=0.632 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC---CCCCCCCceeEEEEEeCCeEEEEeccccceEEEeCCccccCCCCCCCCChHHHHH
Q 028244 17 RRWEAALCRSYERADDVFKDNS---LAPYSVGTTALVAILSPCQIIASNCGDSRVVLSRGKQAIPLTVDHKLDREDEVAR 93 (211)
Q Consensus 17 ~~~~~~l~~a~~~~~~~l~~~~---~~~~~~GtT~~~~~i~~~~~~~anvGDSr~~l~~~~~~~~lt~dH~~~~~~e~~r 93 (211)
..+.+.|.+++..+|+.+.... .....+|||++++++.++++|++|+||||+|+++++++.++|.||++..+.+..|
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~y~~~~~~~~~lt~dh~~~~~~~~~~ 151 (255)
T smart00332 72 EDVEEALRKAFLKTDEEILEELESLEEDAGSGSTAVVALISGNKLYVANVGDSRAVLCRNGKAVQLTEDHKPSNEDERAR 151 (255)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccEEEEEEECCEEEEEeccCceEEEEeCCceeEcCCCCCCcCHHHHHH
Confidence 4588889999999999998875 2346799999999999999999999999999999999999999999998888888
Q ss_pred HHh-------------------hCCCCCCCccccCCcEEEEEecCCCeEEEEEcCCccccCCHHHHHHHHHHHHHhccCC
Q 028244 94 ITN-------------------GGDHDLKPWVIAEPEVTFMTRSEDDEFLILASDGLWDVMSSDDAVKLARYELRRRRRL 154 (211)
Q Consensus 94 i~~-------------------lG~~~~~~~v~~~p~i~~~~~~~~~~~lil~SDGl~d~l~~~~i~~ii~~~~~~~~~~ 154 (211)
+.. +|...+++.+.+.|++...++...+++|||||||||++++++++.+++......
T Consensus 152 i~~~~~~~~~~~~~~~~~lt~~~g~~~~~~~i~~~p~~~~~~~~~~~d~ill~SDGv~~~l~~~~i~~~~~~~~~~---- 227 (255)
T smart00332 152 IEAAGGFVINGRVNGVLALSRAIGDFFLKPYVSAEPDVTVVELTEKDDFLILASDGLWDVLSNQEVVDIVRKHLSK---- 227 (255)
T ss_pred HHHcCCEEECCeECCeEecccccCCHhhcCCeEeeeEEEEEEecCCCcEEEEECCccccCCCHHHHHHHHHHHhhc----
Confidence 773 677666777888999998876567779999999999999999999999864211
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHhCCCCCceEEEEE
Q 028244 155 PEKGDTPSSPACGAAEELVKIAYDAFSTDNISVVIV 190 (211)
Q Consensus 155 ~~~~~~~~~~~~~~a~~L~~~A~~~~~~DNiTvivv 190 (211)
.++..+|+.|++.|..++..||+|+||+
T Consensus 228 --------~~~~~~~~~l~~~a~~~~~~Dn~T~ivv 255 (255)
T smart00332 228 --------SDPEEAAKRLIDLALARGSKDNITVIVV 255 (255)
T ss_pred --------CCHHHHHHHHHHHHHHcCCCCCeEEEEC
Confidence 2589999999999999999999999985
No 9
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.96 E-value=2.1e-29 Score=209.65 Aligned_cols=146 Identities=36% Similarity=0.565 Sum_probs=135.2
Q ss_pred CCCCCCCceeEEEEEeCCeEEEEeccccceEEEeCCccccCCCCCCCCChHHHHHHHh--------------------hC
Q 028244 39 LAPYSVGTTALVAILSPCQIIASNCGDSRVVLSRGKQAIPLTVDHKLDREDEVARITN--------------------GG 98 (211)
Q Consensus 39 ~~~~~~GtT~~~~~i~~~~~~~anvGDSr~~l~~~~~~~~lt~dH~~~~~~e~~ri~~--------------------lG 98 (211)
..+..+|||++||++.++++||||.||||++++|+|+.+-+|.||+|....|..||.+ ||
T Consensus 325 ePG~DSGtTAvVcLv~g~~liVANAGDSRcV~sr~GkAvdmS~DHKPEDevE~~RI~~AGG~vtlDGRVNGGLNLSRA~G 404 (542)
T KOG0699|consen 325 EPGEDSGTTAVVCLVGGDKLIVANAGDSRCVLSRNGKAVDMSVDHKPEDEVETNRIHAAGGQVTLDGRVNGGLNLSRAFG 404 (542)
T ss_pred CCCCCCCceEEEEEecCceEEEecCCCcceEEecCCceeecccCCCcccHHHHHHHHhcCCeEeecceecCccchhhhhh
Confidence 5667899999999999999999999999999999999999999999999999999987 99
Q ss_pred CCCCCC---------ccccCCcEEEEEecCCCeEEEEEcCCccccCCHHHHHHHHHHHHHhccCCCCCCCCCCCcHHHHH
Q 028244 99 DHDLKP---------WVIAEPEVTFMTRSEDDEFLILASDGLWDVMSSDDAVKLARYELRRRRRLPEKGDTPSSPACGAA 169 (211)
Q Consensus 99 ~~~~~~---------~v~~~p~i~~~~~~~~~~~lil~SDGl~d~l~~~~i~~ii~~~~~~~~~~~~~~~~~~~~~~~~a 169 (211)
|+.||. .|++.|+|+...+++.++|+|++|||+|++|+.+++.++++..+.+ ......+|
T Consensus 405 DHaYK~N~~Lp~eEQMIsALPDiK~l~lTpedEFmVvACDGIWN~MsSqeVVdFvr~~l~~-----------n~~ls~ic 473 (542)
T KOG0699|consen 405 DHAYKKNQELPLEEQMISALPDIKILALTPEDEFMVVACDGIWNSMSSQEVVDFVRDLLAK-----------NSSLSEIC 473 (542)
T ss_pred hhhhhcccCCChHHHHhhhcccceeEeecCcccEEEEEccchhhhccHHHHHHHHHHHHhc-----------CchHHHHH
Confidence 999883 5899999999999999999999999999999999999999998886 45789999
Q ss_pred HHHHHHHHhCC------CCCceEEEEEEccCC
Q 028244 170 EELVKIAYDAF------STDNISVVIVDLKAP 195 (211)
Q Consensus 170 ~~L~~~A~~~~------~~DNiTvivv~~~~~ 195 (211)
+.|++.++.-. ++||+|||++.|+..
T Consensus 474 eeL~D~CLAp~T~GDGTGCDNMT~ii~~Fkrk 505 (542)
T KOG0699|consen 474 EELCDACLAPSTDGDGTGCDNMTVIITTFKRK 505 (542)
T ss_pred HHHHHhhcCCCCCCCCcCCCcceEEEEEeccc
Confidence 99999998732 699999999999854
No 10
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=99.96 E-value=8.4e-29 Score=224.88 Aligned_cols=161 Identities=25% Similarity=0.322 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHHHhhcC-----CCCCCCCceeEEEEEeCCeEEEEeccccceEEEe-CCccccCCCCCCCCChHHHHH
Q 028244 20 EAALCRSYERADDVFKDNS-----LAPYSVGTTALVAILSPCQIIASNCGDSRVVLSR-GKQAIPLTVDHKLDREDEVAR 93 (211)
Q Consensus 20 ~~~l~~a~~~~~~~l~~~~-----~~~~~~GtT~~~~~i~~~~~~~anvGDSr~~l~~-~~~~~~lt~dH~~~~~~e~~r 93 (211)
.+.|.++|..+|+.|+... ....+||||++++++.++++|++||||||+|+++ +|++++||.||++........
T Consensus 455 ~~~L~~ai~~AN~~I~~~~~~~~~~~~~~MGTTlv~alI~~~~l~ianVGDSRaYli~r~g~l~QLT~DHs~~~~lv~~G 534 (645)
T PRK14559 455 EETIREAIYLANEAIYDLNQQNARSGSGRMGTTLVMALVQDTQVAVAHVGDSRLYRVTRKGGLEQLTVDHEVGQREIQRG 534 (645)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCCceeeeEEEECCEEEEEEecCceEEEEecCCeEEEeCCCCCHHHHHHHhC
Confidence 5679999999999998753 1445799999999999999999999999999985 679999999999874322111
Q ss_pred HH---------------hhCCCCCCCccccCCcEEEEEecCCCeEEEEEcCCcccc--CCHHHHHHHHHHHHHhccCCCC
Q 028244 94 IT---------------NGGDHDLKPWVIAEPEVTFMTRSEDDEFLILASDGLWDV--MSSDDAVKLARYELRRRRRLPE 156 (211)
Q Consensus 94 i~---------------~lG~~~~~~~v~~~p~i~~~~~~~~~~~lil~SDGl~d~--l~~~~i~~ii~~~~~~~~~~~~ 156 (211)
+. .||+... ....|++..+.+.+ +++||||||||||+ +.. .+.+.+...+..
T Consensus 535 i~~~~a~~~p~~~~LTrALG~~~~---~~l~Pdi~~~~L~~-gD~lLLCSDGL~D~~~ve~-~~~~~l~~il~~------ 603 (645)
T PRK14559 535 VEPQIAYARPDAYQLTQALGPRDN---SAIQPDIQFLEIEE-DTLLLLCSDGLSDNDLLET-HWQTHLLPLLSS------ 603 (645)
T ss_pred CCHHHHhcCcccceeeeccCCCCC---CcccceEEEEEcCC-CCEEEEECCCCCCCcccch-HHHHHHHHHHhc------
Confidence 11 1776432 12379998887765 56999999999994 443 333333333332
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhCCCCCceEEEEEEccCCC
Q 028244 157 KGDTPSSPACGAAEELVKIAYDAFSTDNISVVIVDLKAPR 196 (211)
Q Consensus 157 ~~~~~~~~~~~~a~~L~~~A~~~~~~DNiTvivv~~~~~~ 196 (211)
..++.+++++|++.|+.+|+.||+|+|||++....
T Consensus 604 -----~~~l~~aa~~Li~~Al~~gg~DNITvIvV~l~~~p 638 (645)
T PRK14559 604 -----SANLDQGLNKLIDLANQYNGHDNITAILVRLKVRP 638 (645)
T ss_pred -----CCCHHHHHHHHHHHHHHcCCCCcEEEEEEEeccCC
Confidence 45789999999999999999999999999997653
No 11
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=99.94 E-value=8.8e-27 Score=197.08 Aligned_cols=154 Identities=35% Similarity=0.530 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC-------CCCCCCCceeEEEEEeCCeEEEEeccccceEEEeC---C---ccccCCCC
Q 028244 16 HRRWEAALCRSYERADDVFKDNS-------LAPYSVGTTALVAILSPCQIIASNCGDSRVVLSRG---K---QAIPLTVD 82 (211)
Q Consensus 16 ~~~~~~~l~~a~~~~~~~l~~~~-------~~~~~~GtT~~~~~i~~~~~~~anvGDSr~~l~~~---~---~~~~lt~d 82 (211)
...+.++|.+||+++++.+.... +.-.-+|+|+++.++.++.+||||+|||||+|.+. + ..+|||.|
T Consensus 166 ~~~v~~al~~Af~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~~LyVaN~GDSRAVLG~~~~~~~~~~A~qLS~d 245 (390)
T KOG0700|consen 166 HGDVLEALSKAFEATEEDFLEMVDKQLQENPELALVGSCCLVGLIKGGDLYVANVGDSRAVLGVVENNGSWLVAVQLSTD 245 (390)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhcceEEEEEEeCCeEEEEecCcchhhhceecCCCCeEEEEecChh
Confidence 57789999999999999997653 45568999999999999999999999999999653 3 46899999
Q ss_pred CCCCChHHHHHHHh-------------------------hCCCCCC---------------------CccccCCcEEEEE
Q 028244 83 HKLDREDEVARITN-------------------------GGDHDLK---------------------PWVIAEPEVTFMT 116 (211)
Q Consensus 83 H~~~~~~e~~ri~~-------------------------lG~~~~~---------------------~~v~~~p~i~~~~ 116 (211)
|+.+++.|..||.. |||..+| |++++.|.++++.
T Consensus 246 Hn~~ne~Ev~Rir~eHPdd~~~vv~~~~RvkG~L~vsRAfGd~~lK~~~~n~e~l~~~fr~~~~~t~PyltaeP~i~~Hr 325 (390)
T KOG0700|consen 246 HNASNEDEVRRIRSEHPDDPHIVVNKHWRVKGILQVSRAFGDGYLKWPEFNQEPLLEKFRIPYIGTPPYLTAEPSITHHK 325 (390)
T ss_pred hccccHHHHHHHHHhCCCCcceEeeccceeeEEEEeeeeccceeecchhhccchhHhhcCCCCCCCCCceeccceEEEEE
Confidence 99999999999987 7777666 6899999999999
Q ss_pred ecCCCeEEEEEcCCccccCCHHHHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHHHHhCC
Q 028244 117 RSEDDEFLILASDGLWDVMSSDDAVKLARYELRRRRRLPEKGDTPSSPACGAAEELVKIAYDAF 180 (211)
Q Consensus 117 ~~~~~~~lil~SDGl~d~l~~~~i~~ii~~~~~~~~~~~~~~~~~~~~~~~~a~~L~~~A~~~~ 180 (211)
+.+.|.|+||||||||++|+++|+.+++...+... ..-..+|+.|+++|+.+.
T Consensus 326 L~p~DkFLIlASDGLwE~lsNeeaV~lV~~~i~~~-----------~pd~~~A~hLIr~aL~~a 378 (390)
T KOG0700|consen 326 LTPNDKFLILASDGLWEYLSNEEAVSLVHEFISGK-----------FPDGNPATHLIRHALGRA 378 (390)
T ss_pred cCCCCeEEEEeccchhhhcChHHHHHHHHHhhccC-----------CCCCCHHHHHHHHHHhhh
Confidence 99999999999999999999999999999876531 233578999999998754
No 12
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.93 E-value=1.4e-24 Score=179.23 Aligned_cols=166 Identities=33% Similarity=0.471 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHHHHHHhhcC-CCCCCCCceeEEEEEeCCeEEEEeccccceEEEeCCccccCCCCCCCCChHHHHHHHh-
Q 028244 19 WEAALCRSYERADDVFKDNS-LAPYSVGTTALVAILSPCQIIASNCGDSRVVLSRGKQAIPLTVDHKLDREDEVARITN- 96 (211)
Q Consensus 19 ~~~~l~~a~~~~~~~l~~~~-~~~~~~GtT~~~~~i~~~~~~~anvGDSr~~l~~~~~~~~lt~dH~~~~~~e~~ri~~- 96 (211)
+..+|+.||+..+++|.... .....+|||+.++++.-+|+|++|.||||++++|+++++++|.+.+|. .|++|+..
T Consensus 220 ViGAlEsAFqemDeqiarer~~~~~~GGCtalvvi~llGKlYvaNAGDsRAIlVrndeirplS~efTPe--tERqRlQ~L 297 (493)
T KOG1323|consen 220 VIGALESAFQEMDEQIARERQVWRLPGGCTALVVIVLLGKLYVANAGDSRAILVRNDEIRPLSKEFTPE--TERQRLQEL 297 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeeeccceEEccCCCceEEEEecCCeeecccccCcH--HHHHHHHHH
Confidence 77899999999999998765 556789999999999999999999999999999999999999999997 56666655
Q ss_pred -------------------------------------------------------------------------hCCCCC-
Q 028244 97 -------------------------------------------------------------------------GGDHDL- 102 (211)
Q Consensus 97 -------------------------------------------------------------------------lG~~~~- 102 (211)
+||+.+
T Consensus 298 af~~PeLlgneFtrLEfprRl~~~dLgqrvLyRD~~MtGWayKtve~~DLr~pLI~gegrkaRll~TigVsRGlGDH~Lk 377 (493)
T KOG1323|consen 298 AFRNPELLGNEFTRLEFPRRLTIKDLGQRVLYRDWNMTGWAYKTVEEEDLRFPLISGEGRKARLLATIGVSRGLGDHHLK 377 (493)
T ss_pred hhcChHhhcccccceecccccChhhhcceeeeeccccccceeehhhhhcCCcceecccchhhhhhhhheeccccCcceee
Confidence 777755
Q ss_pred --------CCccccCCcEEEEEec----CCCeEEEEEcCCccccCCHHHHHHHHHHHHHhccCCCCCCCCCCCcH---HH
Q 028244 103 --------KPWVIAEPEVTFMTRS----EDDEFLILASDGLWDVMSSDDAVKLARYELRRRRRLPEKGDTPSSPA---CG 167 (211)
Q Consensus 103 --------~~~v~~~p~i~~~~~~----~~~~~lil~SDGl~d~l~~~~i~~ii~~~~~~~~~~~~~~~~~~~~~---~~ 167 (211)
||++++.|++.+.++. ..|+++||+||||||+++++++..++++.+.... ..+| ..
T Consensus 378 v~dsnl~iKPFLssvPeV~V~dl~q~e~~~DdVvilatDGLWDVlSneeva~~Vrs~L~~~d---------p~Dp~RYt~ 448 (493)
T KOG1323|consen 378 VVDSNLSIKPFLSSVPEVRVYDLRQYEHLTDDVVILATDGLWDVLSNEEVALIVRSFLPSTD---------PADPSRYTQ 448 (493)
T ss_pred eecCCcccchhhhcCCeeEEEehhhhccCCCcEEEEecCchhhhcccHHHHHHHHHhcCCCC---------CCChhHHHH
Confidence 4789999999998874 3577999999999999999999999998776432 2333 57
Q ss_pred HHHHHHHHHHh-------------CCCCCceEEEEEEccCC
Q 028244 168 AAEELVKIAYD-------------AFSTDNISVVIVDLKAP 195 (211)
Q Consensus 168 ~a~~L~~~A~~-------------~~~~DNiTvivv~~~~~ 195 (211)
+|+.|+..|.. -++.|+|||-||-+...
T Consensus 449 aaqdlva~arg~~k~rgWr~~n~~lgSgDDIsVfVIPL~~~ 489 (493)
T KOG1323|consen 449 AAQDLVAAARGQQKDRGWRMNNGGLGSGDDISVFVIPLKYC 489 (493)
T ss_pred HHHHHHHHhcCccCCCceeccCCCcCCCCceEEEEEeccCC
Confidence 88999988864 24799999999988764
No 13
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.79 E-value=4.4e-18 Score=140.32 Aligned_cols=158 Identities=18% Similarity=0.264 Sum_probs=114.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCceeEEEEEe--CCeEEEEeccccceEEEeCCccccCCCC--CCCCChHH
Q 028244 15 WHRRWEAALCRSYERADDVFKDNSLAPYSVGTTALVAILS--PCQIIASNCGDSRVVLSRGKQAIPLTVD--HKLDREDE 90 (211)
Q Consensus 15 ~~~~~~~~l~~a~~~~~~~l~~~~~~~~~~GtT~~~~~i~--~~~~~~anvGDSr~~l~~~~~~~~lt~d--H~~~~~~e 90 (211)
...++...|..|+.++-+ . .....++||++++.+. +++||++|+|||...++|+|+++..|.. |.+..|.+
T Consensus 143 ~~~~P~~lL~~ay~~l~~----~-~~~~vGSSTAcI~~l~~~~~~Lh~aNLGDSGF~VvR~G~vv~~S~~Q~H~FN~PyQ 217 (330)
T KOG1379|consen 143 NPSDPVNLLEKAYAELKS----Q-KVPIVGSSTACILALDRENGKLHTANLGDSGFLVVREGKVVFRSPEQQHYFNTPYQ 217 (330)
T ss_pred CCCChHHHHHHHHHHHhh----c-CCCCCCcceeeeeeeecCCCeEEEeeccCcceEEEECCEEEEcCchheeccCCcee
Confidence 344677777777765433 2 2334578888888887 8899999999999999999999998866 44554444
Q ss_pred HHHHHhhCCCCCCCccccCCc---EEEEEecCCCeEEEEEcCCccccCCHHHHHHHHHHHHHhccCCCCCCCCCCCcHHH
Q 028244 91 VARITNGGDHDLKPWVIAEPE---VTFMTRSEDDEFLILASDGLWDVMSSDDAVKLARYELRRRRRLPEKGDTPSSPACG 167 (211)
Q Consensus 91 ~~ri~~lG~~~~~~~v~~~p~---i~~~~~~~~~~~lil~SDGl~d~l~~~~i~~ii~~~~~~~~~~~~~~~~~~~~~~~ 167 (211)
.. ++...+...+...|+ .+.+++..+ |+||||||||||++.+.+|..++....... ..+++.
T Consensus 218 Ls----~~p~~~~~~~~d~p~~ad~~~~~v~~G-DvIilATDGlfDNl~e~~Il~il~~~~~~~----------~~~lq~ 282 (330)
T KOG1379|consen 218 LS----SPPEGYSSYISDVPDSADVTSFDVQKG-DVIILATDGLFDNLPEKEILSILKGLDARG----------NLDLQV 282 (330)
T ss_pred ec----cCCccccccccCCccccceEEEeccCC-CEEEEecccccccccHHHHHHHHHHhhccc----------cccHHH
Confidence 22 121111222333444 455655554 599999999999999999999998765421 467999
Q ss_pred HHHHHHHHHHh-----------------------CCCCCceEEEEEEc
Q 028244 168 AAEELVKIAYD-----------------------AFSTDNISVVIVDL 192 (211)
Q Consensus 168 ~a~~L~~~A~~-----------------------~~~~DNiTvivv~~ 192 (211)
.|+.++..|.+ .|..|+|||||..+
T Consensus 283 ~A~~ia~~Ar~ls~d~~~~SPFA~~Ar~~g~~~~gGK~DdITvvls~v 330 (330)
T KOG1379|consen 283 TAQKIAEKARELSRDPKFQSPFAQAAREHGFKAYGGKPDDITVVLSSV 330 (330)
T ss_pred HHHHHHHHHHHhccCcCcCChHHHHHHHhCcccCCCCcccEEEEEecC
Confidence 99999999977 34599999999764
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.75 E-value=5.6e-18 Score=155.70 Aligned_cols=156 Identities=28% Similarity=0.417 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCceeEEEEEeC--------CeEEEEeccccceEEEeCCccccCCCCC-CCCChHHHHH
Q 028244 23 LCRSYERADDVFKDNSLAPYSVGTTALVAILSP--------CQIIASNCGDSRVVLSRGKQAIPLTVDH-KLDREDEVAR 93 (211)
Q Consensus 23 l~~a~~~~~~~l~~~~~~~~~~GtT~~~~~i~~--------~~~~~anvGDSr~~l~~~~~~~~lt~dH-~~~~~~e~~r 93 (211)
++++|...|+++... +...|..++.+.+.. .++++||+|+|.++++++|+..++|+-. ....++|.+|
T Consensus 591 mr~~fl~~~rklg~~---g~~lg~~~~~~~i~~d~~~~asS~~l~~Anvg~c~avls~ng~~~p~t~~~~~~v~~eE~~R 667 (1081)
T KOG0618|consen 591 MRNTFLRLNRKLGEE---GQVLGGSVVLCQIVEDSLSPASSKTLFAANVGTCMAVLSRNGKPLPTTRSPMLEVDREEYKR 667 (1081)
T ss_pred HHHHHHHHhhhhhhh---hccccchhhheeecccccCcccchhhhHhhhccchhhhhhcCCcCcccccccccCCHHHHHH
Confidence 999999999999554 455666777777754 3789999999999999999998888764 4448899999
Q ss_pred HHh--------------------hCCCCCCCccccCCcEEEEEecCCCeEEEEEcCCccccCCHHHHHHHHHHHHHhccC
Q 028244 94 ITN--------------------GGDHDLKPWVIAEPEVTFMTRSEDDEFLILASDGLWDVMSSDDAVKLARYELRRRRR 153 (211)
Q Consensus 94 i~~--------------------lG~~~~~~~v~~~p~i~~~~~~~~~~~lil~SDGl~d~l~~~~i~~ii~~~~~~~~~ 153 (211)
|.. +|.+.+.|++.+.|++....+++.|+|||+++-+||++|+.+++.+.++.
T Consensus 668 I~~~~g~i~ed~k~ngvt~~tR~iG~~~l~P~v~p~Phv~~~~Lt~qdE~LIvgn~~lW~~Lsid~a~~~vRn------- 740 (1081)
T KOG0618|consen 668 IVDSKGFITEDNKLNGVTSSTRAIGPFSLFPHVLPDPHVSVVILTEQDEFLIVGNKQLWSVLSIDTAVDAVRN------- 740 (1081)
T ss_pred HHHhcCeecCCCeeeceeeeeeecccccccccccCCCceeeEecccCceEEEEcchHHhhhccHHHHHHHHhc-------
Confidence 977 88888889999999999999999999999999999999999999999995
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHhCCCCCceEEEEEEccCCC
Q 028244 154 LPEKGDTPSSPACGAAEELVKIAYDAFSTDNISVVIVDLKAPR 196 (211)
Q Consensus 154 ~~~~~~~~~~~~~~~a~~L~~~A~~~~~~DNiTvivv~~~~~~ 196 (211)
..+|-.||++|++.|...|..||++|+||++....
T Consensus 741 --------~~dpL~AAkKL~d~AqSYgc~~nv~vlVv~l~~~~ 775 (1081)
T KOG0618|consen 741 --------VEDPLLAAKKLCDLAQSYGCAENVSVLVVRLNHLE 775 (1081)
T ss_pred --------CCchHHHHHHHHHHHHhcccccCeeEEEEEeecch
Confidence 78999999999999999999999999999997653
No 15
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=99.53 E-value=4.9e-13 Score=105.52 Aligned_cols=124 Identities=21% Similarity=0.206 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCceeEEEEE--eCCeEEEEeccccceEEEe-CCccccCCCCCCCCChHHHHHHHhhCC
Q 028244 23 LCRSYERADDVFKDNSLAPYSVGTTALVAIL--SPCQIIASNCGDSRVVLSR-GKQAIPLTVDHKLDREDEVARITNGGD 99 (211)
Q Consensus 23 l~~a~~~~~~~l~~~~~~~~~~GtT~~~~~i--~~~~~~~anvGDSr~~l~~-~~~~~~lt~dH~~~~~~e~~ri~~lG~ 99 (211)
+.+.+..+|+.+... ....+|+|++++++ ..++++++|+||+|+|+++ ++...+.+.+..+. +|.
T Consensus 66 ~~~~l~~~n~~l~~~--~~~~~~~T~~~~~id~~~~~l~~~~~Gd~~~~~~~~~~~~~~~~~~~~~~----------lG~ 133 (193)
T smart00331 66 LSQILERLNRAIYEN--GEDGMFATLFLALYDFAGGTLSYANAGHSPPYLLRADGGLVEDLDDLGAP----------LGL 133 (193)
T ss_pred HHHHHHHHHHHHHhc--CCCCcEEEEEEEEEECCCCEEEEEeCCCCceEEEECCCCeEEEcCCCCce----------eee
Confidence 556777888888775 34568999999998 6789999999999999999 55555555553332 665
Q ss_pred CCCCCccccCCcEEEEEecCCCeEEEEEcCCccccCCHHHHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHHHH
Q 028244 100 HDLKPWVIAEPEVTFMTRSEDDEFLILASDGLWDVMSSDDAVKLARYELRRRRRLPEKGDTPSSPACGAAEELVKIAY 177 (211)
Q Consensus 100 ~~~~~~v~~~p~i~~~~~~~~~~~lil~SDGl~d~l~~~~i~~ii~~~~~~~~~~~~~~~~~~~~~~~~a~~L~~~A~ 177 (211)
.. ...++.....+.++ +.|+|+|||||+.++++++.+++.+.. ..+++++++.+++.+.
T Consensus 134 ~~-----~~~~~~~~~~l~~g-d~l~l~TDGl~e~~~~~~l~~~l~~~~-------------~~~~~~~~~~i~~~~~ 192 (193)
T smart00331 134 EP-----DVEVDVRELTLEPG-DLLLLYTDGLTEARNPERLEELLEELL-------------GSPPAEIAQRILEELL 192 (193)
T ss_pred CC-----CCcceeEEEeeCCC-CEEEEECCCccccCChHHHHHHHHHhc-------------CCCHHHHHHHHHHHHh
Confidence 32 11355566655555 589999999999999999999988642 2468888888888764
No 16
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.43 E-value=2.3e-13 Score=108.89 Aligned_cols=101 Identities=24% Similarity=0.319 Sum_probs=56.6
Q ss_pred CCCCCCceeEEEEEeCCeEEEEeccccceEE-EeCCccccCCCCCCCCChHHHHHHH-hhCCCCCCCccccCCcEEEEEe
Q 028244 40 APYSVGTTALVAILSPCQIIASNCGDSRVVL-SRGKQAIPLTVDHKLDREDEVARIT-NGGDHDLKPWVIAEPEVTFMTR 117 (211)
Q Consensus 40 ~~~~~GtT~~~~~i~~~~~~~anvGDSr~~l-~~~~~~~~lt~dH~~~~~~e~~ri~-~lG~~~~~~~v~~~p~i~~~~~ 117 (211)
....++||++++++.+++++++|+||||+|+ .+++.+..++.+|+.. ..+.. .+... ......++..++
T Consensus 93 ~~~~~~tTl~~~v~~~~~~~~~~iGD~~i~~~~~~g~~~~l~~~~~~~----~~~~~~~~~~~----~~~~~~~~~~~~- 163 (212)
T PF13672_consen 93 ELRDYGTTLLALVIDPDKVYIFNIGDSRIYVIRRNGEIQQLTDDHSGE----YPNQTRSLTGD----DPEPDVQYGSIP- 163 (212)
T ss_dssp GGTT-EE-EEEEEEETTEEEEEEESS-EEEEEEETTEEEE-S---BHH----HHHCTTSCCHH----CCCTETEEEEEE-
T ss_pred cccccCceEEEEEEECCEEEEEEECCCeEEEEECCCEEEEcCCCccch----hhhhhhccCcc----ccccCCeEEEEE-
Confidence 4567899999999999999999999999965 5789999999998622 11110 01110 111123344444
Q ss_pred cCCCeEEEEEcCCccccCCHHH-HHHHHHHHHH
Q 028244 118 SEDDEFLILASDGLWDVMSSDD-AVKLARYELR 149 (211)
Q Consensus 118 ~~~~~~lil~SDGl~d~l~~~~-i~~ii~~~~~ 149 (211)
...++.|+|||||||+.+...+ +..++.+.++
T Consensus 164 ~~~~d~ilL~SDG~~~~l~~~~~~~~~l~~~~~ 196 (212)
T PF13672_consen 164 LEEGDVILLCSDGVWDNLRSYEDLEQFLKDLWN 196 (212)
T ss_dssp --TT-EEEEE-HHHHTTS-HHHHHHHH------
T ss_pred cCCCCEEEEECcCccccCCCHHHHHHHhhhccc
Confidence 3555689999999999998654 6777766544
No 17
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=99.40 E-value=1.1e-11 Score=116.45 Aligned_cols=137 Identities=13% Similarity=0.145 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCceeEEEEEe--CCeEEEEeccccceEEEeCCccccCCCCCCCCChHHHHHHHhhCCCC
Q 028244 24 CRSYERADDVFKDNSLAPYSVGTTALVAILS--PCQIIASNCGDSRVVLSRGKQAIPLTVDHKLDREDEVARITNGGDHD 101 (211)
Q Consensus 24 ~~a~~~~~~~l~~~~~~~~~~GtT~~~~~i~--~~~~~~anvGDSr~~l~~~~~~~~lt~dH~~~~~~e~~ri~~lG~~~ 101 (211)
..++..+|+.+... ....+++|+.+++++ .+++.++|+|+++.|+.|++.+.+++..+.| +|-..
T Consensus 617 ~~ai~~lN~~L~~~--~~~~~faTl~l~~IDl~~g~~~~~~aG~~p~~i~r~~~v~~i~s~~lP-----------lGil~ 683 (764)
T TIGR02865 617 EVAIKTVNSILSLR--STDEKFSTLDLSVIDLYTGQAEFVKVGAVPSFIKRGAKVEVIRSSNLP-----------IGILD 683 (764)
T ss_pred HHHHHHHHHHHHhC--CCCCeEEEEEEEEEECCCCeEEEEecCCCceEEEECCEEEEecCCCce-----------eEecc
Confidence 45778888887654 234578999999985 5799999999999999999988888766554 44321
Q ss_pred CCCccccCCcEEEEEecCCCeEEEEEcCCccccCCHHH-----HHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHHH
Q 028244 102 LKPWVIAEPEVTFMTRSEDDEFLILASDGLWDVMSSDD-----AVKLARYELRRRRRLPEKGDTPSSPACGAAEELVKIA 176 (211)
Q Consensus 102 ~~~~v~~~p~i~~~~~~~~~~~lil~SDGl~d~l~~~~-----i~~ii~~~~~~~~~~~~~~~~~~~~~~~~a~~L~~~A 176 (211)
. ..++....++.+ +|+|+|+|||+|+..++.+ +.+++.. .. ..+|+++++.|++.|
T Consensus 684 ---~--~~~~~~~~~L~~-GD~Lll~SDGv~E~~~~~~~~~~~l~~~l~~----~~---------~~~p~ela~~Il~~a 744 (764)
T TIGR02865 684 ---E--VDVELVRKKLKN-GDLIVMVSDGVLEGEKEVEGKVLWLVRKLKE----TN---------TNDPEEIAEYLLEKA 744 (764)
T ss_pred ---C--CccceEEEEeCC-CCEEEEECCCCCcCCcccccHHHHHHHHHHh----cC---------CCCHHHHHHHHHHHH
Confidence 1 145555555444 5589999999999876533 4444432 11 467999999999999
Q ss_pred HhCC---CCCceEEEEEEc
Q 028244 177 YDAF---STDNISVVIVDL 192 (211)
Q Consensus 177 ~~~~---~~DNiTvivv~~ 192 (211)
.+.. ..||+|++++++
T Consensus 745 ~~~~~~~~~DD~Tvlvirv 763 (764)
T TIGR02865 745 KELRSGKIKDDMTVIVAKV 763 (764)
T ss_pred HHhcCCCCCCCeEEEEEEe
Confidence 7643 489999999987
No 18
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=99.36 E-value=8e-11 Score=92.62 Aligned_cols=143 Identities=17% Similarity=0.176 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCceeEEEEEe--CCeEEEEeccccceEEEeC--CccccCCCCCCCCChHHHHHHHhhC
Q 028244 23 LCRSYERADDVFKDNSLAPYSVGTTALVAILS--PCQIIASNCGDSRVVLSRG--KQAIPLTVDHKLDREDEVARITNGG 98 (211)
Q Consensus 23 l~~a~~~~~~~l~~~~~~~~~~GtT~~~~~i~--~~~~~~anvGDSr~~l~~~--~~~~~lt~dH~~~~~~e~~ri~~lG 98 (211)
....+..+|+.+.... .....++|++++++. .+.++++|+|+++++++++ +....+.....| +|
T Consensus 40 p~~~l~~ln~~l~~~~-~~~~~~~t~~~~~~d~~~~~l~~~~aG~~~~l~~~~~~~~~~~~~~~~~~-----------lG 107 (193)
T PF07228_consen 40 PEELLEALNRRLYRDL-KGDNRYATACYAIIDPETGTLTYANAGHPPPLLLRPGGREIEQLESEGPP-----------LG 107 (193)
T ss_dssp HHHHHHHHHHHHHHHT-TTTSTTEEEEEEEEETTTTEEEEEEESSSEEEEEETTCTEEEEETCSSBB-----------CS
T ss_pred HHHHHHHHHHHHHHHh-hhccccceEEEEEecccceEEEEeCCCCCCEEEEeccccceeecccCccc-----------ee
Confidence 5566778888885542 112478888888875 4689999999999999999 344444443333 55
Q ss_pred CCCCCCccccCCcEEEEEecCCCeEEEEEcCCccccCCHHHHH----HHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHH
Q 028244 99 DHDLKPWVIAEPEVTFMTRSEDDEFLILASDGLWDVMSSDDAV----KLARYELRRRRRLPEKGDTPSSPACGAAEELVK 174 (211)
Q Consensus 99 ~~~~~~~v~~~p~i~~~~~~~~~~~lil~SDGl~d~l~~~~i~----~ii~~~~~~~~~~~~~~~~~~~~~~~~a~~L~~ 174 (211)
...- ..+....+. .++++.|+|+||||++....+... ++. +.+.+.. ..+++++++.|++
T Consensus 108 ~~~~-----~~~~~~~~~-l~~gd~l~l~TDGl~e~~~~~~~~~~~~~~~-~~l~~~~---------~~~~~~~~~~l~~ 171 (193)
T PF07228_consen 108 IFED-----IDYQEQEIQ-LEPGDRLLLYTDGLFEALNEDGEFFGEERLL-ELLDENR---------GLSPQEIIDALLE 171 (193)
T ss_dssp SSCT-----TCEEEEEEE---TTEEEEEECHHHCTTTCHHCHHCCCHHHH-HHHHCHT---------TS-HHHHHHHHHH
T ss_pred eecc-----ccccceEEE-eccccEEEEeCCChhhccCCccchhHHHHHH-HHHhhcc---------CCCHHHHHHHHHH
Confidence 4221 123333443 455668999999999998544332 222 2222211 5679999999999
Q ss_pred HHHh---CCCCCceEEEEEEcc
Q 028244 175 IAYD---AFSTDNISVVIVDLK 193 (211)
Q Consensus 175 ~A~~---~~~~DNiTvivv~~~ 193 (211)
.+.. ....||+|++++++.
T Consensus 172 ~~~~~~~~~~~DD~tvl~~~~~ 193 (193)
T PF07228_consen 172 AIDRFGKGPLRDDITVLVIRRQ 193 (193)
T ss_dssp HHHHHTTSSTSS-EEEEEEEE-
T ss_pred HHHHhcCCCCCCceEEEEEEEC
Confidence 9876 357999999999873
No 19
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=98.17 E-value=0.00015 Score=63.05 Aligned_cols=137 Identities=19% Similarity=0.244 Sum_probs=93.3
Q ss_pred HHHHHHHHHHhhcCCCCCCCCceeEEEEEe--CCeEEEEeccccceEEEeCCcc---ccCCCCCCCCChHHHHHHHhhCC
Q 028244 25 RSYERADDVFKDNSLAPYSVGTTALVAILS--PCQIIASNCGDSRVVLSRGKQA---IPLTVDHKLDREDEVARITNGGD 99 (211)
Q Consensus 25 ~a~~~~~~~l~~~~~~~~~~GtT~~~~~i~--~~~~~~anvGDSr~~l~~~~~~---~~lt~dH~~~~~~e~~ri~~lG~ 99 (211)
..+..+|+.++..... .+-+|+..+++. .+.+.++|+|---.++.+.+.. ..+..--.| +|.
T Consensus 214 ~~l~~~n~~~~~~~~~--~~f~T~~~~~~d~~~~~l~y~~aGH~p~~i~~~~~~~~~~~l~~~g~p-----------iG~ 280 (367)
T COG2208 214 DVLETLNRVLKQNLEE--DMFVTLFLGVYDLDSGELTYSNAGHEPALILSADGEIEVEDLTALGLP-----------IGL 280 (367)
T ss_pred HHHHHHHHHHHhcccC--CcEEEEEEEEEeccCCEEEEeeCCCCCeeEEEcCCCceeEEccCCCce-----------eee
Confidence 3566777777776422 277888888875 5799999999999999998643 333332222 454
Q ss_pred CCCCCccccCCcEEEEEecCCCeEEEEEcCCccc-------cCCHHHHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHH
Q 028244 100 HDLKPWVIAEPEVTFMTRSEDDEFLILASDGLWD-------VMSSDDAVKLARYELRRRRRLPEKGDTPSSPACGAAEEL 172 (211)
Q Consensus 100 ~~~~~~v~~~p~i~~~~~~~~~~~lil~SDGl~d-------~l~~~~i~~ii~~~~~~~~~~~~~~~~~~~~~~~~a~~L 172 (211)
. +.. .+.+....+.+ |+.+++.|||+.+ .+..+...+++.... ..+++++++.+
T Consensus 281 ~---~~~--~~~~~~~~l~~-gd~lvl~tDGv~Ea~~~~~~~~~~~~~~~~~~~~~-------------~~~~~e~~~~i 341 (367)
T COG2208 281 L---PDY--QYEVASLQLEP-GDLLVLYTDGVTEARNSDGEFFGLERLLKILGRLL-------------GQPAEEILEAI 341 (367)
T ss_pred c---CCc--cchheeEEecC-CCEEEEEcCCeeeeecCCccEecHHHHHHHHHHHh-------------CCCHHHHHHHH
Confidence 2 111 33344444445 6799999999999 566677777777421 46788888888
Q ss_pred HHHHHh----CCCCCceEEEEEEcc
Q 028244 173 VKIAYD----AFSTDNISVVIVDLK 193 (211)
Q Consensus 173 ~~~A~~----~~~~DNiTvivv~~~ 193 (211)
.+...+ ....||+|++++++.
T Consensus 342 ~~~l~~~~~~~~~~DDiTll~lk~~ 366 (367)
T COG2208 342 LESLEELQGDQIQDDDITLLVLKVK 366 (367)
T ss_pred HHHHHHhhCCccccCceEEEEEEec
Confidence 877655 335888999999985
No 20
>PF09436 DUF2016: Domain of unknown function (DUF2016); InterPro: IPR018560 This entry represents the N-terminal of proteins that contain a ubiquitin domain.
Probab=69.37 E-value=3.2 Score=27.42 Aligned_cols=20 Identities=20% Similarity=0.300 Sum_probs=15.3
Q ss_pred ecCCCeEEEEEcCCccccCC
Q 028244 117 RSEDDEFLILASDGLWDVMS 136 (211)
Q Consensus 117 ~~~~~~~lil~SDGl~d~l~ 136 (211)
+...|+.+++++||+|=.+.
T Consensus 23 l~~~G~Rllva~nGv~lEv~ 42 (72)
T PF09436_consen 23 LERPGHRLLVASNGVFLEVR 42 (72)
T ss_pred cccCCcEEEEecCcEEEEEe
Confidence 34577789999999996543
No 21
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=54.94 E-value=25 Score=22.27 Aligned_cols=26 Identities=12% Similarity=0.128 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHH
Q 028244 135 MSSDDAVKLARYELRRRRRLPEKGDTPSSPACGAAEELVK 174 (211)
Q Consensus 135 l~~~~i~~ii~~~~~~~~~~~~~~~~~~~~~~~~a~~L~~ 174 (211)
-++++|..++.++ .-+|.+++++|+.
T Consensus 19 hse~eIya~L~ec--------------nMDpnea~qrLL~ 44 (60)
T PF06972_consen 19 HSEEEIYAMLKEC--------------NMDPNEAVQRLLS 44 (60)
T ss_pred CCHHHHHHHHHHh--------------CCCHHHHHHHHHh
Confidence 5789999999988 7899999999986
No 22
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=44.49 E-value=46 Score=17.18 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=17.2
Q ss_pred EEEEeCCeEEEEeccccceEEE
Q 028244 50 VAILSPCQIIASNCGDSRVVLS 71 (211)
Q Consensus 50 ~~~i~~~~~~~anvGDSr~~l~ 71 (211)
+++-.++.+||+-.|..|+..+
T Consensus 7 vav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 7 VAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEETTSEEEEEECCCTEEEEE
T ss_pred EEEeCCCCEEEEECCCCEEEEC
Confidence 3444788999999999988764
No 23
>COG1539 FolB Dihydroneopterin aldolase [Coenzyme metabolism]
Probab=43.62 E-value=1.3e+02 Score=21.94 Aligned_cols=64 Identities=20% Similarity=0.272 Sum_probs=49.9
Q ss_pred EEEcCCccccCCHHHHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCCCceEEEEEEccCCCccC
Q 028244 125 ILASDGLWDVMSSDDAVKLARYELRRRRRLPEKGDTPSSPACGAAEELVKIAYDAFSTDNISVVIVDLKAPRIRS 199 (211)
Q Consensus 125 il~SDGl~d~l~~~~i~~ii~~~~~~~~~~~~~~~~~~~~~~~~a~~L~~~A~~~~~~DNiTvivv~~~~~~~~~ 199 (211)
--.||=+-+.++-.++.+.+.+.+++.. -.-.+..|+.+.+..+.+. ..++.+-+++.++....
T Consensus 42 A~~~Ddl~dtl~Y~~v~~~i~~~v~~~~---------~~LiE~lA~~ia~~l~~~~--~~v~~~~v~v~KP~ap~ 105 (121)
T COG1539 42 AAESDDLADTLNYAEVSELIKEIVEGKR---------FALIETLAEEIADLLLARF--PRVELVEVKVTKPKAPI 105 (121)
T ss_pred hcCccchhheecHHHHHHHHHHHHhCCc---------cchHHHHHHHHHHHHHhhC--CccEEEEEEEECCCCCC
Confidence 3568889999999999999999887654 4456788899888888765 77888878887765443
No 24
>cd00534 DHNA_DHNTPE Dihydroneopterin aldolase (DHNA) and 7,8-dihydroneopterin triphosphate epimerase domain (DHNTPE); these enzymes have been designated folB and folX, respectively. Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is DHNA which catalyses the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate. Though it is known that DHNTPE catalyzes the epimerization of dihydroneopterin triphosphate to dihydromonapterin triphosphate, the biological role of this enzyme is still unclear. It is hypothesized that it is not an essential protein since a folX knockout in E. coli has a normal phenoty
Probab=38.75 E-value=1.3e+02 Score=21.35 Aligned_cols=59 Identities=22% Similarity=0.280 Sum_probs=40.7
Q ss_pred EEcCCccccCCHHHHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCCCceEEEEEEccCC
Q 028244 126 LASDGLWDVMSSDDAVKLARYELRRRRRLPEKGDTPSSPACGAAEELVKIAYDAFSTDNISVVIVDLKAP 195 (211)
Q Consensus 126 l~SDGl~d~l~~~~i~~ii~~~~~~~~~~~~~~~~~~~~~~~~a~~L~~~A~~~~~~DNiTvivv~~~~~ 195 (211)
-.||.+-+.++-..+.+.+...+.... -...+.+|..+.+..+... +.+.-+-+++.+.
T Consensus 42 ~~~D~l~~tidY~~l~~~i~~~~~~~~---------~~llE~La~~ia~~i~~~~--~~v~~v~v~v~K~ 100 (118)
T cd00534 42 GESDDLADTLNYAEVAKLIKKIVEGSP---------FKLIETLAEEIADILLEDY--PKVSAIKVKVEKP 100 (118)
T ss_pred hccCChhhccCHHHHHHHHHHHHhCCC---------HhHHHHHHHHHHHHHHHhC--CCceEEEEEEECC
Confidence 467888888999999999888776432 3456788899998888762 3344444444443
No 25
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=37.38 E-value=1.8e+02 Score=22.02 Aligned_cols=76 Identities=14% Similarity=0.112 Sum_probs=47.3
Q ss_pred cEEEEEecCCCeEEEEEcCCccccCCHHHHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHHHHhC-CCCCceEEEE
Q 028244 111 EVTFMTRSEDDEFLILASDGLWDVMSSDDAVKLARYELRRRRRLPEKGDTPSSPACGAAEELVKIAYDA-FSTDNISVVI 189 (211)
Q Consensus 111 ~i~~~~~~~~~~~lil~SDGl~d~l~~~~i~~ii~~~~~~~~~~~~~~~~~~~~~~~~a~~L~~~A~~~-~~~DNiTviv 189 (211)
|+..+...+++.++++..||.-.-.........+...+...... ..++.++.+.+-+..... ....-.|+++
T Consensus 19 D~~~~~~~~~~~~~~~v~Dg~G~G~~aa~~s~~~~~~~~~~~~~-------~~~~~~~l~~~n~~l~~~~~~~~~~T~~~ 91 (193)
T smart00331 19 DFYDVVKLPEGRLLIAIADVMGKGLAAALAMSMARSALRTLLSE-------GISLSQILERLNRAIYENGEDGMFATLFL 91 (193)
T ss_pred cEEEEEEeCCCeEEEEEEecCCCChHHHHHHHHHHHHHHHHhhc-------CCCHHHHHHHHHHHHHhcCCCCcEEEEEE
Confidence 34333344555688999999998777777766666555432210 235777777766655554 3445677777
Q ss_pred EEcc
Q 028244 190 VDLK 193 (211)
Q Consensus 190 v~~~ 193 (211)
+.+.
T Consensus 92 ~~id 95 (193)
T smart00331 92 ALYD 95 (193)
T ss_pred EEEE
Confidence 7764
No 26
>PF08148 DSHCT: DSHCT (NUC185) domain; InterPro: IPR012961 This C-terminal domain is found in DOB1/SK12/helY-like DEAD box helicases [].; GO: 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides; PDB: 4A4Z_A 2XGJ_B 3L9O_A.
Probab=34.87 E-value=76 Score=24.59 Aligned_cols=28 Identities=18% Similarity=0.236 Sum_probs=19.1
Q ss_pred cCCccccCCHHHHHHHHHHHHHhccCCC
Q 028244 128 SDGLWDVMSSDDAVKLARYELRRRRRLP 155 (211)
Q Consensus 128 SDGl~d~l~~~~i~~ii~~~~~~~~~~~ 155 (211)
.+|+|+.+++.+++.++.....+.+...
T Consensus 30 ~~g~f~~L~p~elAa~lS~~v~e~~~~~ 57 (180)
T PF08148_consen 30 FSGVFDDLDPAELAALLSCFVYEPRRED 57 (180)
T ss_dssp HCTCCCCS-HHHHHHHHHHHC-----SS
T ss_pred HcCCCCCCCHHHHHHHHHHhhcccccCc
Confidence 5899999999999999998776655433
No 27
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=32.63 E-value=97 Score=24.54 Aligned_cols=53 Identities=15% Similarity=0.177 Sum_probs=32.3
Q ss_pred CeEEEEEcCCccc---cCCHHHHH----HHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHHHHhCC
Q 028244 121 DEFLILASDGLWD---VMSSDDAV----KLARYELRRRRRLPEKGDTPSSPACGAAEELVKIAYDAF 180 (211)
Q Consensus 121 ~~~lil~SDGl~d---~l~~~~i~----~ii~~~~~~~~~~~~~~~~~~~~~~~~a~~L~~~A~~~~ 180 (211)
||-++..|.|||- ++++..-- +..++. .++.++. ..=|++.|..|++.-..||
T Consensus 71 DDTvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~-----vn~g~D~--~SIPKevA~qLI~MHq~RG 130 (237)
T COG3700 71 DDTVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEK-----VNNGWDE--FSIPKEVARQLIDMHQRRG 130 (237)
T ss_pred CCeeEecccccccCccccCCChHHhhcCHHHHHH-----HhcCCcc--ccchHHHHHHHHHHHHhcC
Confidence 4578999999995 45543221 222222 2333333 3458999999999776665
No 28
>TIGR00525 folB dihydroneopterin aldolase. This model describes a bacterial dihydroneopterin aldolase, shown to form homo-octamers in E. coli. The equivalent activity is catalyzed by domains of larger folate biosynthesis proteins in other systems. The closely related parologous enzyme in E. coli, dihydroneopterin triphosphate epimerase, which is also homo-octameric, and dihydroneopterin aldolase domains of larger proteins, score below the trusted cutoff but may score well above the noise cutoff.
Probab=31.23 E-value=1.9e+02 Score=20.39 Aligned_cols=59 Identities=12% Similarity=0.113 Sum_probs=41.5
Q ss_pred EEcCCccccCCHHHHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHHHHhCCC-CCceEEEEEEcc
Q 028244 126 LASDGLWDVMSSDDAVKLARYELRRRRRLPEKGDTPSSPACGAAEELVKIAYDAFS-TDNISVVIVDLK 193 (211)
Q Consensus 126 l~SDGl~d~l~~~~i~~ii~~~~~~~~~~~~~~~~~~~~~~~~a~~L~~~A~~~~~-~DNiTvivv~~~ 193 (211)
-.+|.+-+.++-..+.+.+...+.... -.-.+.+|..+.+..+.... .+-+++-+-+..
T Consensus 41 ~~~D~l~~tidY~~v~~~i~~~~~~~~---------~~llE~la~~Ia~~i~~~~~~v~~v~v~i~Kp~ 100 (116)
T TIGR00525 41 AESDDLGDTVNYAELYSAIEEIVAEKP---------RDLIETVAYRIADRLFADFPQVQRVKVRVSKPN 100 (116)
T ss_pred hccCCchhccCHHHHHHHHHHHHhCCC---------hhHHHHHHHHHHHHHHHHCCCceEEEEEEEeCC
Confidence 458888888999999999987776432 34567788999888887643 555555554443
No 29
>PF05785 CNF1: Rho-activating domain of cytotoxic necrotizing factor; InterPro: IPR008430 This entry represents several bacterial cytotoxic necrotizing factor proteins as well as related dermonecrotic toxin (DNT) from Bordetella species. Cytotoxic necrotizing factor 1 (CNF1) is a toxin whose structure from Escherichia coli revealed a 4-layer alpha/beta/beta/alpha structure containing mixed beta-sheets []. CNF1 is expressed in strains of E. coli causing uropathogenic and neonatal meningitis. CNF1 alters host cell actin cytoskeleton and promotes bacterial invasion of the blood-brain barrier endothelial cells []. CNF1 belongs to a unique group of large cytotoxins that cause constitutive activation of Rho guanosine triphosphatases (GTPases), which are key regulators of the actin cytoskeleton []. Bordetella dermonecrotic toxin (DNT) stimulates the assembly of actin stress fibres and focal adhesions by deamidating or polyaminating Gln63 of the small GTPase Rho. DNT is an A-B toxin composed of an N-terminal receptor-binding (B) domain and a C-terminal enzymatically active (A) domain [].; PDB: 1HZG_A 1HQ0_A.
Probab=27.83 E-value=74 Score=26.76 Aligned_cols=25 Identities=24% Similarity=0.130 Sum_probs=18.7
Q ss_pred CCCCCceeEEEEEeCCeEEEEecccc
Q 028244 41 PYSVGTTALVAILSPCQIIASNCGDS 66 (211)
Q Consensus 41 ~~~~GtT~~~~~i~~~~~~~anvGDS 66 (211)
+.-+|||.+.+ +.++.+|..|+|-+
T Consensus 129 G~LSGCT~i~A-~K~~~~y~~HtGk~ 153 (281)
T PF05785_consen 129 GALSGCTMIYA-RKDNYFYAYHTGKS 153 (281)
T ss_dssp --BSS-EEEEE-EETTEEEEEEEEES
T ss_pred CccCCCEEEEE-EcCCeEEEEEcCCC
Confidence 35678887766 68999999999977
No 30
>TIGR03735 PRTRC_A PRTRC system protein A. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated protein A.
Probab=26.42 E-value=41 Score=26.66 Aligned_cols=60 Identities=18% Similarity=0.158 Sum_probs=33.8
Q ss_pred ecCCCeEEEEEcCCccccCCHHHHHHHHHHHHHhc---cC------CCCCCCCCCCcHHHHHHHHHHHHHhC
Q 028244 117 RSEDDEFLILASDGLWDVMSSDDAVKLARYELRRR---RR------LPEKGDTPSSPACGAAEELVKIAYDA 179 (211)
Q Consensus 117 ~~~~~~~lil~SDGl~d~l~~~~i~~ii~~~~~~~---~~------~~~~~~~~~~~~~~~a~~L~~~A~~~ 179 (211)
+...+..+++++||+|-.+...-+.-+..-..... +| ..+.++ .=+....++++.+|.+.
T Consensus 22 l~~~g~r~~~a~~G~~lev~r~wl~~~~~~~~~~~~~~PYg~~~~~~~~~~g---~Ip~~l~~~ii~hAr~~ 90 (192)
T TIGR03735 22 LEKPGHRFIVAADGVWREVRRPWLHAIQRVAPASPITVPYGAVEETLEFLCG---PIPASLLEEFAEAARAA 90 (192)
T ss_pred cccCCcEEEEecCcEEEEEecHHHHHHHHhcccccccccceeeeeeEEEecC---CCCHHHHHHHHHHHHhc
Confidence 34557788999999998766655543332110000 00 000111 12567788999999874
No 31
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=26.36 E-value=1.2e+02 Score=20.37 Aligned_cols=26 Identities=23% Similarity=0.216 Sum_probs=20.7
Q ss_pred EEEEcCCccccCCHHHHHHHHHHHHH
Q 028244 124 LILASDGLWDVMSSDDAVKLARYELR 149 (211)
Q Consensus 124 lil~SDGl~d~l~~~~i~~ii~~~~~ 149 (211)
+|+|+.+++.+++++++..++++..+
T Consensus 70 ~v~~~~~~~~~~~~~~~~~ll~~~~~ 95 (101)
T PF13649_consen 70 LVVCSGLSLHHLSPEELEALLRRIAR 95 (101)
T ss_dssp EEEE-TTGGGGSSHHHHHHHHHHHHH
T ss_pred EEEEcCCccCCCCHHHHHHHHHHHHH
Confidence 57888887889999999999987543
No 32
>COG2168 DsrH Uncharacterized conserved protein involved in oxidation of intracellular sulfur [Inorganic ion transport and metabolism]
Probab=26.13 E-value=40 Score=23.57 Aligned_cols=28 Identities=14% Similarity=0.368 Sum_probs=21.7
Q ss_pred CCCeEEEEEcCCccccCCHHHHHHHHHH
Q 028244 119 EDDEFLILASDGLWDVMSSDDAVKLARY 146 (211)
Q Consensus 119 ~~~~~lil~SDGl~d~l~~~~i~~ii~~ 146 (211)
..+|-++|+.||++-.+...+..+-++.
T Consensus 23 ~~~D~vlL~qdGV~aAl~~~~~~~sl~~ 50 (96)
T COG2168 23 TEGDAVLLLQDGVYAALKGNRYLASLRE 50 (96)
T ss_pred cccCeEEEEcccchhhhcCcHHHHHHhc
Confidence 3444689999999998888877777763
No 33
>PF02152 FolB: Dihydroneopterin aldolase; InterPro: IPR006157 Dihydroneopterin aldolase catalyses the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate. In the opportunistic pathogen Pneumocystis carinii, dihydroneopterin aldolase function is expressed as the N-terminal portion of the multifunctional folic acid synthesis protein (Fas). This region encompasses two domains, FasA and FasB, which are 27% amino acid identical. FasA and FasB also share significant amino acid sequence similarity with bacterial dihydroneopterin aldolases. This region consists of two tandem sequences each homologous to folB and which form tetramers [].; GO: 0004150 dihydroneopterin aldolase activity, 0006760 folic acid-containing compound metabolic process; PDB: 1SQL_P 2O90_A 1B9L_A 1RSI_A 2NM2_C 1RRY_A 1RRW_A 1RS2_A 2DHN_A 1DHN_A ....
Probab=25.48 E-value=2.3e+02 Score=19.72 Aligned_cols=56 Identities=16% Similarity=0.148 Sum_probs=41.8
Q ss_pred cCCccccCCHHHHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHHHHhCCC-CCceEEEEEEc
Q 028244 128 SDGLWDVMSSDDAVKLARYELRRRRRLPEKGDTPSSPACGAAEELVKIAYDAFS-TDNISVVIVDL 192 (211)
Q Consensus 128 SDGl~d~l~~~~i~~ii~~~~~~~~~~~~~~~~~~~~~~~~a~~L~~~A~~~~~-~DNiTvivv~~ 192 (211)
+|.+-+.++-..+.+.+...+.... -.-.+.+|..+.+..+.... .+.+++-+-+.
T Consensus 41 ~D~l~~tvdY~~l~~~i~~~~~~~~---------f~llE~la~~i~~~i~~~~~~v~~v~v~v~Kp 97 (113)
T PF02152_consen 41 SDDLDDTVDYAELAEAIRELVENSH---------FNLLETLAERIADRILKEFPQVQSVTVKVRKP 97 (113)
T ss_dssp HTTGGGSSHHHHHHHHHHHHHHSSE---------ESSHHHHHHHHHHHHHHHTTTESEEEEEEEET
T ss_pred ccccccccCHHHHHHHHHHHHhcCC---------cccHHHHHHHHHHHHHHhCCCccEEEEEEECC
Confidence 5888889999999999988877543 35678899999999987654 55555544443
No 34
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=25.15 E-value=1.2e+02 Score=16.51 Aligned_cols=19 Identities=16% Similarity=0.279 Sum_probs=15.2
Q ss_pred CCeEEEEeccccceEEEeC
Q 028244 55 PCQIIASNCGDSRVVLSRG 73 (211)
Q Consensus 55 ~~~~~~anvGDSr~~l~~~ 73 (211)
++++|++|-|+..+.++.-
T Consensus 3 ~~~lyv~~~~~~~v~~id~ 21 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDT 21 (42)
T ss_pred CCEEEEEeCCCCEEEEEEC
Confidence 4678999988888888864
No 35
>PRK11593 folB bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase; Provisional
Probab=24.39 E-value=2.6e+02 Score=19.79 Aligned_cols=59 Identities=22% Similarity=0.253 Sum_probs=42.2
Q ss_pred EEEcCCccccCCHHHHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCCCceEEEEEEccCC
Q 028244 125 ILASDGLWDVMSSDDAVKLARYELRRRRRLPEKGDTPSSPACGAAEELVKIAYDAFSTDNISVVIVDLKAP 195 (211)
Q Consensus 125 il~SDGl~d~l~~~~i~~ii~~~~~~~~~~~~~~~~~~~~~~~~a~~L~~~A~~~~~~DNiTvivv~~~~~ 195 (211)
.-.||.+-+.++-..+.+.+...+.... -.-.+.+|..+.+..+..... .-+-+++.++
T Consensus 41 a~~~Ddl~~tidY~~v~~~I~~~~~~~~---------~~LlE~la~~ia~~i~~~~~~---~~v~v~v~Kp 99 (119)
T PRK11593 41 AAKSDDVADCLSYADIAETVISHVEGAR---------FALVERVAEEVAELLLARFNS---PWVRIKLSKP 99 (119)
T ss_pred cccccCHhhccCHHHHHHHHHHHHhCCC---------cccHHHHHHHHHHHHHhhCCC---cEEEEEEECC
Confidence 3558889889999999999988776543 445788899999888776543 3344555444
No 36
>PRK15322 invasion protein OrgB; Provisional
Probab=24.19 E-value=2.8e+02 Score=22.29 Aligned_cols=48 Identities=10% Similarity=0.088 Sum_probs=33.6
Q ss_pred CeEEEEEcCCccccCCHHHHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 028244 121 DEFLILASDGLWDVMSSDDAVKLARYELRRRRRLPEKGDTPSSPACGAAEELVKIAYD 178 (211)
Q Consensus 121 ~~~lil~SDGl~d~l~~~~i~~ii~~~~~~~~~~~~~~~~~~~~~~~~a~~L~~~A~~ 178 (211)
+..+|+|||-.--.+||++..+.....+-.. -.+....|+.|-+.+++
T Consensus 147 ~~rFV~~~g~qIaEFsPq~~v~~a~~~l~~~----------~d~~~~~~r~ls~~~l~ 194 (210)
T PRK15322 147 EQRFIMSCGDQIAEFSPEQFVETAVGVIKHH----------LDELPQDCRTISDNAIN 194 (210)
T ss_pred CCceEEEeCCchhccCHHHHHHHHHHHHHhC----------ccchHHHHHHHhHHHHH
Confidence 3346889998888899999998887666543 22356667777666553
No 37
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.36 E-value=2.4e+02 Score=23.90 Aligned_cols=83 Identities=12% Similarity=0.044 Sum_probs=49.5
Q ss_pred ccceEEEeCCc-cccCCCCCCCCChHHHHHHHhhCCCCC--CCccccCCcEEEEE----ec----CCCeEEEEEcCCccc
Q 028244 65 DSRVVLSRGKQ-AIPLTVDHKLDREDEVARITNGGDHDL--KPWVIAEPEVTFMT----RS----EDDEFLILASDGLWD 133 (211)
Q Consensus 65 DSr~~l~~~~~-~~~lt~dH~~~~~~e~~ri~~lG~~~~--~~~v~~~p~i~~~~----~~----~~~~~lil~SDGl~d 133 (211)
|||+|.+.++. +...-.||+.....-...+...|..-- ...| -.|+...+ +. ....=.++-.-||.-
T Consensus 104 DTRayRl~~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~V--a~Dl~~~dw~~~L~~~G~d~~~pt~~iaEGLl~ 181 (297)
T COG3315 104 DTRAYRLDWPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLV--AVDLREDDWPQALAAAGFDRSRPTLWIAEGLLM 181 (297)
T ss_pred ccceeecCCCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEE--eccccccchHHHHHhcCCCcCCCeEEEeccccc
Confidence 89999999985 888899998875554444444442100 0000 00010000 11 012224566689999
Q ss_pred cCCHHHHHHHHHHHHH
Q 028244 134 VMSSDDAVKLARYELR 149 (211)
Q Consensus 134 ~l~~~~i~~ii~~~~~ 149 (211)
||+++++.+++.....
T Consensus 182 YL~~~~v~~ll~~I~~ 197 (297)
T COG3315 182 YLPEEAVDRLLSRIAA 197 (297)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999987654
No 38
>PF14014 DUF4230: Protein of unknown function (DUF4230)
Probab=21.78 E-value=3.3e+02 Score=20.01 Aligned_cols=41 Identities=15% Similarity=0.259 Sum_probs=27.7
Q ss_pred ccCCcEEEEEecCCCeEEEEEcCCccccCCHHHHHHHHHHH
Q 028244 107 IAEPEVTFMTRSEDDEFLILASDGLWDVMSSDDAVKLARYE 147 (211)
Q Consensus 107 ~~~p~i~~~~~~~~~~~lil~SDGl~d~l~~~~i~~ii~~~ 147 (211)
.|.|.+....+..+.--++-...|+|..+++++..++....
T Consensus 75 LP~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 115 (157)
T PF14014_consen 75 LPPPEILSVEIDEDSIKVYDEKGGWFNPITPEDQNEAQKEA 115 (157)
T ss_pred CCCcEEeeeecCccceEEEEccCCccCCCCHHHHHHHHHHH
Confidence 44666666655544444556888899888888777666654
No 39
>PRK03072 heat shock protein HtpX; Provisional
Probab=20.71 E-value=1.5e+02 Score=24.82 Aligned_cols=29 Identities=10% Similarity=0.242 Sum_probs=24.7
Q ss_pred EEEEEcCCccccCCHHHHHHHHHHHHHhc
Q 028244 123 FLILASDGLWDVMSSDDAVKLARYELRRR 151 (211)
Q Consensus 123 ~lil~SDGl~d~l~~~~i~~ii~~~~~~~ 151 (211)
.+|..|||+.+.++++|+..++...+..-
T Consensus 110 ~~v~vt~gLl~~l~~~El~aVlAHElgHi 138 (288)
T PRK03072 110 AAVCCTEGILQILNERELRGVLGHELSHV 138 (288)
T ss_pred cEEEecHHHHHhCCHHHHHHHHHHHHHHH
Confidence 46788999999999999999998777653
No 40
>PRK05457 heat shock protein HtpX; Provisional
Probab=20.50 E-value=1.9e+02 Score=24.21 Aligned_cols=30 Identities=27% Similarity=0.319 Sum_probs=25.8
Q ss_pred eEEEEEcCCccccCCHHHHHHHHHHHHHhc
Q 028244 122 EFLILASDGLWDVMSSDDAVKLARYELRRR 151 (211)
Q Consensus 122 ~~lil~SDGl~d~l~~~~i~~ii~~~~~~~ 151 (211)
+.+|+.|+|+.+.++++|+..++...+..-
T Consensus 116 ~~~V~vt~gLl~~L~~~El~aVlAHElgHi 145 (284)
T PRK05457 116 NSLVAVSTGLLQNMSRDEVEAVLAHEISHI 145 (284)
T ss_pred CeEEEeehHHhhhCCHHHHHHHHHHHHHHH
Confidence 357899999999999999999998777654
Done!