BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028245
(211 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GXB1|U548_ARATH UPF0548 protein At2g17695 OS=Arabidopsis thaliana GN=At2g17695 PE=2
SV=1
Length = 205
Score = 308 bits (788), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 139/206 (67%), Positives = 171/206 (83%), Gaps = 1/206 (0%)
Query: 6 MVFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVL 65
MVFLSWGRP+ ++Q+ I+K+G FNYD KY+G +++ +A LKED + KDGFL+NHARVL
Sbjct: 1 MVFLSWGRPSSEQQQQVINKTGTFNYDNKYRGVSSRSIAKLKEDSEIDKDGFLINHARVL 60
Query: 66 VGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYV 125
VGSG E+YEKGK AL+ W+HFG++WAFVDP TP++ G KFC+CVKE LPWV LPLQ+VYV
Sbjct: 61 VGSGRESYEKGKKALQNWKHFGMDWAFVDPATPVETGKKFCICVKEVLPWVMLPLQVVYV 120
Query: 126 NESIRKKKTAASFGFGSGTLQGHLLQAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIG 185
+ES + +K A FG+GSGTLQGHLL AGEE+FSIELD N +VWYEI SFSKPA FLSF+G
Sbjct: 121 DESRKSRKGPAHFGYGSGTLQGHLL-AGEEKFSIELDGNGEVWYEITSFSKPAHFLSFLG 179
Query: 186 YPYVQLRQKYFAHQSVNAVKKHLTAS 211
YPYV+LRQK+FA S AV KH+ AS
Sbjct: 180 YPYVKLRQKHFARHSSEAVLKHVNAS 205
>sp|Q86JL6|U548_DICDI UPF0548 protein OS=Dictyostelium discoideum GN=DDB_G0271742 PE=3
SV=1
Length = 216
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 89/163 (54%), Gaps = 10/163 (6%)
Query: 57 FLLNHARVLVGSGLETYEKGKTALKTWRHFGLNWA-FVDPKTPIQNGVKFCVCVKEFLPW 115
F ++ ++ +G+G+E ++K ALK W+HF L+W F TPI G + K+ W
Sbjct: 50 FDVDQVKIQLGTGVECFQKAVAALKQWKHFDLDWVDFYFKNTPIAVGETVGILSKQVGFW 109
Query: 116 VTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLQAGEERFSIE-------LDDNNQVW 168
+ +I Y+ + ++ + FG+ GTL+ H ++ GEERF IE D V+
Sbjct: 110 ILSFARINYLYDG-DQEDGSIKFGYSYGTLKDH-VEKGEERFVIEWVRDPDGAPDKGAVY 167
Query: 169 YEIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNAVKKHLTAS 211
YE++SFS+P+ +LS +GYP + Q F S N + K + ++
Sbjct: 168 YEMLSFSEPSYWLSQLGYPVTRYFQNKFVVDSCNQMLKAVGSN 210
>sp|Q9RST8|Y2035_DEIRA UPF0548 protein DR_2035 OS=Deinococcus radiodurans (strain ATCC
13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 /
NCIMB 9279 / R1 / VKM B-1422) GN=DR_2035 PE=3 SV=1
Length = 198
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 71/155 (45%), Gaps = 8/155 (5%)
Query: 51 GLSKDGFLLNHARVLVGSGLETYEKGKTALKTWRHFGLNWAFV---DPKTPI-QNGVKFC 106
G + D RV VG G +E+ K AL+ + F +W + TP+ + G
Sbjct: 35 GRTPDWARSGRHRVRVGEGEACWERAKAALRGGQMF-QDWVLRPHGEASTPLSRQGATVV 93
Query: 107 VCVKEFLPW--VTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLQAGEERFSIELDDN 164
+ V+ F PW L + N + +GFG GTL GHL++ GEERF +E D
Sbjct: 94 LLVRHFGPWGRRKWGLYSLMTNRVLYLVDEPDRYGFGYGTLPGHLVR-GEERFLLERDAG 152
Query: 165 NQVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQ 199
VW+++ +FS+ A S P V Q+ A
Sbjct: 153 GAVWFDLTTFSRAALPFSRFAQPLVGAAQRRGARH 187
>sp|Q8IYX0|ZN679_HUMAN Zinc finger protein 679 OS=Homo sapiens GN=ZNF679 PE=2 SV=2
Length = 411
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 55/134 (41%), Gaps = 14/134 (10%)
Query: 41 KPVACLKEDQGLSKDGFLLNHARVLVGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQ 100
KP C + Q S+ L NH R+ G EK T + + F L+ + K I
Sbjct: 266 KPYTCEECGQAFSRSSTLANHKRIHTG------EKPYTCEECGKAFSLSSSLTYHKR-IH 318
Query: 101 NGVK--FC-VCVKEFLPWVTL-PLQIVYVNESIRK-KKTAASFGFGSGTLQGH-LLQAGE 154
G K C C K F TL +I++ E K K+ +F F S TL H + GE
Sbjct: 319 TGEKPYTCEECGKAFNCSSTLKKHKIIHTGEKPYKCKECGKAFAF-SSTLNTHKRIHTGE 377
Query: 155 ERFSIELDDNNQVW 168
E + E D W
Sbjct: 378 EPYKCEECDKAFKW 391
>sp|A7FQA9|RSMA_CLOB1 Ribosomal RNA small subunit methyltransferase A OS=Clostridium
botulinum (strain ATCC 19397 / Type A) GN=rsmA PE=3 SV=1
Length = 275
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 128 SIRKKKTAASFGFGSGTLQGHLLQAGEERFSIELD 162
I K+ T G G GTL LL+ +E +SIELD
Sbjct: 37 EINKEDTVIEIGPGVGTLTKELLERAKEVYSIELD 71
>sp|C1FQ40|RSMA_CLOBJ Ribosomal RNA small subunit methyltransferase A OS=Clostridium
botulinum (strain Kyoto / Type A2) GN=rsmA PE=3 SV=1
Length = 275
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 129 IRKKKTAASFGFGSGTLQGHLLQAGEERFSIELD 162
I K+ T G G GTL LL+ +E +SIELD
Sbjct: 38 INKEDTVIEIGPGVGTLTKELLERAKEVYSIELD 71
>sp|C3KXY4|RSMA_CLOB6 Ribosomal RNA small subunit methyltransferase A OS=Clostridium
botulinum (strain 657 / Type Ba4) GN=rsmA PE=3 SV=1
Length = 275
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 129 IRKKKTAASFGFGSGTLQGHLLQAGEERFSIELD 162
I K+ T G G GTL LL+ +E +SIELD
Sbjct: 38 INKEDTVIEIGPGVGTLTKELLERAKEVYSIELD 71
>sp|B1KRY8|RSMA_CLOBM Ribosomal RNA small subunit methyltransferase A OS=Clostridium
botulinum (strain Loch Maree / Type A3) GN=rsmA PE=3
SV=1
Length = 275
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 128 SIRKKKTAASFGFGSGTLQGHLLQAGEERFSIELD 162
I K+ T G G GTL LL+ +E +SIELD
Sbjct: 37 EISKEDTVIEIGPGVGTLTKELLERAKEVYSIELD 71
>sp|B1ID54|RSMA_CLOBK Ribosomal RNA small subunit methyltransferase A OS=Clostridium
botulinum (strain Okra / Type B1) GN=rsmA PE=3 SV=1
Length = 275
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 129 IRKKKTAASFGFGSGTLQGHLLQAGEERFSIELD 162
I K+ T G G GTL LL+ +E +SIELD
Sbjct: 38 ISKEDTVIEIGPGVGTLTKELLERAKEVYSIELD 71
>sp|A7G9I5|RSMA_CLOBL Ribosomal RNA small subunit methyltransferase A OS=Clostridium
botulinum (strain Langeland / NCTC 10281 / Type F)
GN=rsmA PE=3 SV=1
Length = 275
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 129 IRKKKTAASFGFGSGTLQGHLLQAGEERFSIELD 162
I K+ T G G GTL LL+ +E +SIELD
Sbjct: 38 ISKEDTVIEIGPGVGTLTKELLERAKEVYSIELD 71
>sp|Q8EP46|Y2271_OCEIH UPF0249 protein OB2271 OS=Oceanobacillus iheyensis (strain DSM
14371 / JCM 11309 / KCTC 3954 / HTE831) GN=OB2271 PE=3
SV=1
Length = 230
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 7 VFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKED-----QGLSKDGFLLNH 61
+ L+WGRP + + + +G F Y + Y+ +A ++++ + K G LNH
Sbjct: 60 LVLTWGRPISNDVASLVQSNGKFRYTSSYREMDPPSLADVEKEWRAQIEEFKKTGLTLNH 119
>sp|P10078|ZFP28_MOUSE Zinc finger protein 28 OS=Mus musculus GN=Zfp28 PE=2 SV=3
Length = 825
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 27/63 (42%)
Query: 41 KPVACLKEDQGLSKDGFLLNHARVLVGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQ 100
KP C + + + G L H RV G Y+KG+ A + HF + K+P
Sbjct: 740 KPYECKECRKTFIQIGHLNQHKRVHTGERTYNYKKGRRAFRQTAHFAHHQQIHSGKSPAH 799
Query: 101 NGV 103
+ +
Sbjct: 800 HSL 802
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,712,679
Number of Sequences: 539616
Number of extensions: 3489330
Number of successful extensions: 7040
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 7026
Number of HSP's gapped (non-prelim): 15
length of query: 211
length of database: 191,569,459
effective HSP length: 112
effective length of query: 99
effective length of database: 131,132,467
effective search space: 12982114233
effective search space used: 12982114233
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)