Query 028245
Match_columns 211
No_of_seqs 128 out of 180
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 13:49:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028245.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028245hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cnr_A Type IV fimbriae assemb 84.8 2.7 9.4E-05 32.0 6.7 43 86-128 29-73 (117)
2 1ywu_A Hypothetical protein PA 74.4 11 0.00037 29.3 7.2 49 88-144 60-111 (149)
3 2l74_A Putative uncharacterize 70.4 13 0.00045 28.7 6.8 48 89-144 59-109 (145)
4 2pcs_A Conserved protein; stru 69.2 32 0.0011 25.5 13.3 86 116-209 59-147 (162)
5 3ijt_A SMU.440, putative uncha 56.8 64 0.0022 24.7 14.3 135 57-209 17-153 (155)
6 2lio_A Uncharacterized protein 33.8 1.3E+02 0.0044 22.9 6.8 63 101-178 41-106 (136)
7 2ns9_A Hypothetical protein AP 32.9 1.4E+02 0.0047 21.5 14.3 86 116-210 68-156 (157)
8 2d4r_A Hypothetical protein TT 28.0 1.5E+02 0.0051 20.4 15.3 71 135-209 72-143 (147)
9 2leq_A Uncharacterized protein 25.8 1.7E+02 0.0059 20.4 13.6 127 60-209 7-141 (146)
10 2rde_A Uncharacterized protein 22.4 2.2E+02 0.0074 23.1 6.7 52 88-143 164-222 (251)
11 3d8m_A BPP, baseplate protein, 21.4 32 0.0011 27.9 1.3 25 143-168 119-143 (165)
12 3da0_A Cleaved chimeric recept 21.0 34 0.0012 26.9 1.3 24 144-168 88-111 (136)
No 1
>3cnr_A Type IV fimbriae assembly protein; PILZ, xanthomonas citri, type IV pilus assembly, unknown function; HET: MSE; 1.90A {Xanthomonas axonopodis PV} PDB: 3dsg_A
Probab=84.79 E-value=2.7 Score=32.01 Aligned_cols=43 Identities=7% Similarity=0.010 Sum_probs=34.0
Q ss_pred cCceeeEecCCCCCCCCcEEEEEeeeccc--eeeeceEEEEEeec
Q 028245 86 FGLNWAFVDPKTPIQNGVKFCVCVKEFLP--WVTLPLQIVYVNES 128 (211)
Q Consensus 86 ~~~~g~~V~~~~p~~~G~~v~v~~~~~~~--~~~~PcRVV~v~de 128 (211)
...+|++|..+.|..+|+.|.+.+..... .+....+|+|+...
T Consensus 29 is~GGlFI~T~~~~~~G~~V~l~l~Lp~~~~~i~~~GkVvWi~p~ 73 (117)
T 3cnr_A 29 VKGGGIFVPTPKRYMLGDEVFLLLTLPDSSERLPVAGKVIWTTPA 73 (117)
T ss_dssp BTTCEEEEECCSCCCTTCEEEEEEECTTCSCEEEEEEEEEEEECC
T ss_pred cCCCeEEEeeCCccCCCCEEEEEEEcCCCCceEEEEEEEEEecCC
Confidence 55688999999999999999998763332 35677899999864
No 2
>1ywu_A Hypothetical protein PA4608; PAT7, beta barrel, PILZ domain, structural genomics, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: b.45.2.1
Probab=74.37 E-value=11 Score=29.29 Aligned_cols=49 Identities=10% Similarity=0.094 Sum_probs=34.1
Q ss_pred ceeeEecCCC--CCCCCcEEEEEeeec-cceeeeceEEEEEeecccccCCcceEEEEeec
Q 028245 88 LNWAFVDPKT--PIQNGVKFCVCVKEF-LPWVTLPLQIVYVNESIRKKKTAASFGFGSGT 144 (211)
Q Consensus 88 ~~g~~V~~~~--p~~~G~~v~v~~~~~-~~~~~~PcRVV~v~de~~~~~~~~r~GFaYGT 144 (211)
.+|+.|..+. ++.+|+.|.+.+... ..-+..||+||++.+ ..+|+..-.
T Consensus 60 ~~G~~I~~~~~~~~~~g~~v~v~~~l~~~~~i~~~~~Vvr~~~--------~~~gl~f~~ 111 (149)
T 1ywu_A 60 LHGILVGQPQDWNGDPQRPFEARLYLGLDVLIRMEISLAWARD--------GLLGFECQH 111 (149)
T ss_dssp SSEEEEECSSCCCCCTTSEEEEEEESSSSCEEEEEEEEEEEET--------TEEEEEEEE
T ss_pred cccCEEEcCCcCCCCCCCEEEEEEEcCCCCeEEEEEEEEEEcC--------CEEEEEEEE
Confidence 3567776544 668999999977622 124789999999986 466665543
No 3
>2l74_A Putative uncharacterized protein PA4608; PILZ, C-DI-GMP, unknown function, C-DI-GMP binding P; HET: C2E; NMR {Pseudomonas aeruginosa}
Probab=70.43 E-value=13 Score=28.67 Aligned_cols=48 Identities=8% Similarity=0.068 Sum_probs=33.6
Q ss_pred eeeEecCCC--CCCCCcEEEEEeeec-cceeeeceEEEEEeecccccCCcceEEEEeec
Q 028245 89 NWAFVDPKT--PIQNGVKFCVCVKEF-LPWVTLPLQIVYVNESIRKKKTAASFGFGSGT 144 (211)
Q Consensus 89 ~g~~V~~~~--p~~~G~~v~v~~~~~-~~~~~~PcRVV~v~de~~~~~~~~r~GFaYGT 144 (211)
+|+.|..+. ++.+|+.|.+.+... ..-+..||+||++.+ +.+|+..-.
T Consensus 59 ~G~~I~~~~~~~~~~g~~v~v~~~l~~~~~i~~~~~Vvr~~~--------~~~gl~f~~ 109 (145)
T 2l74_A 59 HGILVGQPQDWNGDPQRPFEARLYLGLDVLIRMEISLAWARD--------GLLGFECQH 109 (145)
T ss_dssp TEEEEECCTTCCCCTTSCEEEEEECSSSCEEEEEEEEEEEET--------TEEEEEEEE
T ss_pred CCCEEEcCCccCCCCCCEEEEEEEcCCCCeEEEEEEEEEEcC--------CEEEEEEEE
Confidence 567776544 568999999877622 124789999999986 466665543
No 4
>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10
Probab=69.22 E-value=32 Score=25.50 Aligned_cols=86 Identities=9% Similarity=0.036 Sum_probs=50.5
Q ss_pred eeeceEEEEEeecccccCCcceEEEEeecCC-CCcccceeEEEEEEEcCCC--eEEEEEEEEecCCchhhhhhhhhHHHH
Q 028245 116 VTLPLQIVYVNESIRKKKTAASFGFGSGTLQ-GHLLQAGEERFSIELDDNN--QVWYEIVSFSKPADFLSFIGYPYVQLR 192 (211)
Q Consensus 116 ~~~PcRVV~v~de~~~~~~~~r~GFaYGTLp-GHpe~~GEE~F~Ve~~~dg--~V~~~I~AFSRPa~~~~rlg~P~~r~~ 192 (211)
.....++.+...++ +.++-|.+.... +-.. .+.-.+.++-.++| .|.+++. | .+...+..++.++...+
T Consensus 59 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~gT~v~~~~~-~-~~~g~l~~~~~~l~~~~ 130 (162)
T 2pcs_A 59 GKYDAIIEVTDIKP-----PYHYKLLVNGEGGPGFV-NAEGVIDLTPINDECTQLTYTYS-A-EVGGKVAAIGQRMLGGV 130 (162)
T ss_dssp EEEEEEEEEEEEET-----TTEEEEEEEEEETTEEE-EEEEEEEEEESSSSEEEEEEEEE-E-EEESGGGGGCHHHHHHH
T ss_pred EEEEEEEEEEecCC-----CcEEEEEEEecCCCccE-EEEEEEEEEecCCCcEEEEEEEE-E-EECCCHHHhhHHHHHHH
Confidence 33444555544432 456655543221 1123 56777777753333 4555443 2 23444577888888778
Q ss_pred HHHHHHHHHHHHHHHhh
Q 028245 193 QKYFAHQSVNAVKKHLT 209 (211)
Q Consensus 193 Qr~~~rry~~al~~~v~ 209 (211)
.+.+....++.|++.+.
T Consensus 131 ~~~~~~~~~~~lk~~~e 147 (162)
T 2pcs_A 131 AKLLISDFFKKIQKEIA 147 (162)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 88888889999988775
No 5
>3ijt_A SMU.440, putative uncharacterized protein; hypothetical protein, unknown function; 2.38A {Streptococcus mutans} SCOP: d.129.3.9 PDB: 2b79_A
Probab=56.84 E-value=64 Score=24.69 Aligned_cols=135 Identities=13% Similarity=0.093 Sum_probs=70.2
Q ss_pred ceeeeeEEEecCch-hHHHHHHHHHhcccccCceeeEecCCCCCCCCcEEEEEeeeccceeeeceEEEEEeecccccCCc
Q 028245 57 FLLNHARVLVGSGL-ETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTA 135 (211)
Q Consensus 57 y~~~~~~~~lG~G~-~~F~~A~~aL~~W~~~~~~g~~V~~~~p~~~G~~v~v~~~~~~~~~~~PcRVV~v~de~~~~~~~ 135 (211)
-.....++.|-.=. .+|+.-. .+.+|.--......+..+.|..+|+...+... .++ ...++|+.++. +
T Consensus 17 ~~~i~~si~I~Appe~VW~~lt-D~~~~~~W~p~v~~~~~~G~~~~G~~~~~~~~-~~~--~~~~~v~~~~p-------~ 85 (155)
T 3ijt_A 17 SMKFSFELAVNTKKEDAWTYYS-QVNQWFVWEGDLEQISLEGEFTTGQKGKMKME-DMP--ELAFTLVEVRE-------N 85 (155)
T ss_dssp CEEEEEEEEESSCHHHHHHHHH-CGGGGGGTSTTEEEEEESSSSSTTCEEEEEET-TSC--CEEEEECCCBT-------T
T ss_pred cEEEEEEEEEcCCHHHHHHHHh-CcccccccchhhEeeeccCCCCCCCEEEEEeC-CCC--cEEEEEEEEeC-------C
Confidence 34556677786654 4554444 46777532222223445678899999887654 222 33456554433 3
Q ss_pred ceEEEEeecCCCCcccceeEEEEEEEcCCCeEEEEE-EEEecCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 028245 136 ASFGFGSGTLQGHLLQAGEERFSIELDDNNQVWYEI-VSFSKPADFLSFIGYPYVQLRQKYFAHQSVNAVKKHLT 209 (211)
Q Consensus 136 ~r~GFaYGTLpGHpe~~GEE~F~Ve~~~dg~V~~~I-~AFSRPa~~~~rlg~P~~r~~Qr~~~rry~~al~~~v~ 209 (211)
.++.| -+.+|+=.. ++ .+.|+-.++|...++. ..|+-|......++ +.+.++..| .+.+++|++.+.
T Consensus 86 ~~~~~-~~~~p~~~~-~~--~h~l~p~~~ggTrvt~~~~~~G~~~~~~~~~--~~~~i~~~~-~~~l~~LK~~aE 153 (155)
T 3ijt_A 86 QCFSD-LTATPFGNV-LF--EHEILENPDGTISLRHSVSLTDSDTTEEALA--FLKQIFADV-PESVGKLKQILE 153 (155)
T ss_dssp TEEEE-EEEETTEEE-EE--EEEEEECTTSCEEEEEEEEESCCSCCHHHHH--HHHHHHTTH-HHHHHHHHHHHT
T ss_pred cEEEE-EEecCCeEE-EE--EEEEEEcCCCcEEEEEEEEEECCCcchhHHH--HHHHHHHHH-HHHHHHHHHHhh
Confidence 56665 345665444 33 3355544455544443 47777764222222 333333322 345666666554
No 6
>2lio_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Bacteroides fragilis}
Probab=33.77 E-value=1.3e+02 Score=22.91 Aligned_cols=63 Identities=17% Similarity=0.173 Sum_probs=41.8
Q ss_pred CCcEEEEEeeeccceeeeceEEEEEeecccccCCcceEEEEeecCCCCcccceeEEEEEEEcCC---CeEEEEEEEEecC
Q 028245 101 NGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLQAGEERFSIELDDN---NQVWYEIVSFSKP 177 (211)
Q Consensus 101 ~G~~v~v~~~~~~~~~~~PcRVV~v~de~~~~~~~~r~GFaYGTLpGHpe~~GEE~F~Ve~~~d---g~V~~~I~AFSRP 177 (211)
+|........ .+ -..||+|+-+.. +.++-|....-++.. -.|.+.+..+ +.+.++|+-|+.+
T Consensus 41 ~g~~~~F~w~--~~-~~~~~~v~~~~~-------~~~i~FrW~~~~~~~-----~~~e~~l~~~~~t~~~~L~vtdFa~~ 105 (136)
T 2lio_A 41 DDKTVTFCWG--KT-EQRQAGIVAIRA-------YSFIRFHWLDDENER-----DYFEIKMSYNELTGDYVLEITDFSEA 105 (136)
T ss_dssp ETTEEEEESS--SS-SEEEEEEEEEET-------TTEEEEEESSSSSSS-----CEEEEEEEECTTTSCEEEEEEEEECH
T ss_pred cCceEEEEeC--CC-CcEeEEEEEEcC-------CCEEEEEccCCCCCc-----eEEEEEEEecCCCCcEEEEEecCCCc
Confidence 5665554332 22 457999999886 578999887643221 2555555422 5899999999987
Q ss_pred C
Q 028245 178 A 178 (211)
Q Consensus 178 a 178 (211)
.
T Consensus 106 ~ 106 (136)
T 2lio_A 106 D 106 (136)
T ss_dssp H
T ss_pred c
Confidence 5
No 7
>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10
Probab=32.91 E-value=1.4e+02 Score=21.52 Aligned_cols=86 Identities=12% Similarity=0.111 Sum_probs=49.5
Q ss_pred eeeceEEEEEeecccccCCcceEEEEeecCCCC--cccceeEEEEEEEcCCC-eEEEEEEEEecCCchhhhhhhhhHHHH
Q 028245 116 VTLPLQIVYVNESIRKKKTAASFGFGSGTLQGH--LLQAGEERFSIELDDNN-QVWYEIVSFSKPADFLSFIGYPYVQLR 192 (211)
Q Consensus 116 ~~~PcRVV~v~de~~~~~~~~r~GFaYGTLpGH--pe~~GEE~F~Ve~~~dg-~V~~~I~AFSRPa~~~~rlg~P~~r~~ 192 (211)
....+++.++..++ +.++-|... ..|. +. .++-.+.++-.++| .|.+++. |. ....+..++.++...+
T Consensus 68 ~~~~~~~~~~~~~~-----~~~i~~~~~-~~~~~~~~-~~~~~~~l~~~~~gT~v~~~~~-~~-~~g~l~~~~~~~~~~~ 138 (157)
T 2ns9_A 68 GDARVRASFEDLEK-----PSKATVKGS-GRGAGSTL-DFTLRFAVEPSGGGSRVSWVFE-GN-VGGLAASMGGRVLDSL 138 (157)
T ss_dssp EEEEEEEEEEEEET-----TTEEEEEEE-EECSSEEE-EEEEEEEEEEETTEEEEEEEEE-EE-EEEGGGGSCHHHHHHH
T ss_pred EEEEEEEEEEecCC-----CcEEEEEEE-ecCCCccE-EEEEEEEEEeCCCcEEEEEEEE-EE-ECcCHHHhhHHHHHHH
Confidence 44566666655332 456655421 2221 34 45666777655443 3444432 22 2234566778877777
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 028245 193 QKYFAHQSVNAVKKHLTA 210 (211)
Q Consensus 193 Qr~~~rry~~al~~~v~~ 210 (211)
.+......++.|++.+.+
T Consensus 139 ~~~~~~~~~~~lk~~~e~ 156 (157)
T 2ns9_A 139 ARRMINDVISGVKRELGE 156 (157)
T ss_dssp HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 788888889999888764
No 8
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6
Probab=27.99 E-value=1.5e+02 Score=20.38 Aligned_cols=71 Identities=10% Similarity=0.039 Sum_probs=39.4
Q ss_pred cceEEEEeecCCCCcccceeEEEEEEEcCCC-eEEEEEEEEecCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 028245 135 AASFGFGSGTLQGHLLQAGEERFSIELDDNN-QVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNAVKKHLT 209 (211)
Q Consensus 135 ~~r~GFaYGTLpGHpe~~GEE~F~Ve~~~dg-~V~~~I~AFSRPa~~~~rlg~P~~r~~Qr~~~rry~~al~~~v~ 209 (211)
+.++.|.. ..|-.. .-+-.+.++-.++| .|.+++. |.-+..++..+..|++...-+....+.+++|++.+.
T Consensus 72 ~~~i~~~~--~~g~~~-~~~~~~~~~~~~~gT~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~e 143 (147)
T 2d4r_A 72 NLRNRFFS--PEGDFD-RYEGTWVFLPEGEGTRVVLTLT-YELTIPIFGGLLRKLVQKLMQENVESLLKGLEERVL 143 (147)
T ss_dssp TTEEEEEE--EEESCS-EEEEEEEEEECSSSEEEEEEEE-EECCCTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEe--ccCChh-heEEEEEEEECCCCcEEEEEEE-EecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555543 334223 22556777666666 3444443 222334566677776654545566778888877764
No 9
>2leq_A Uncharacterized protein; start domains, structural genomics, PSI-biology, protein STR initiative; NMR {Cytophaga hutchinsonii}
Probab=25.77 E-value=1.7e+02 Score=20.44 Aligned_cols=127 Identities=12% Similarity=0.030 Sum_probs=64.6
Q ss_pred eeeEEEecCc-hhHHHHHHH--HHhcccccCceeeEecCCCCCCCCcEEEEEeeeccceeeeceEEEEEeecccccCCcc
Q 028245 60 NHARVLVGSG-LETYEKGKT--ALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAA 136 (211)
Q Consensus 60 ~~~~~~lG~G-~~~F~~A~~--aL~~W~~~~~~g~~V~~~~p~~~G~~v~v~~~~~~~~~~~PcRVV~v~de~~~~~~~~ 136 (211)
...++.|-.- +.+|+.-.+ .+..|-+ ... + +.+..+|..+.+.....+..+..-++|+.++. +.
T Consensus 7 i~~~~~i~ap~e~Vw~~ltd~~~~~~W~~-~~~---~--~~~~~~G~~~~~~~~~~g~~~~~~~~v~~~~p-------~~ 73 (146)
T 2leq_A 7 AQVKTVINAPIEKVWEALVNPEIIKEYMF-GTT---V--VSDWKEGSQIVWKGEWKGKAYEDKGTILQFNE-------RS 73 (146)
T ss_dssp EEEEEEECSCHHHHHHHHSCTTHHHHHSS-SCE---E--ECCCSTTCEEEEEEEETTEEEEEEEEEEEEET-------TT
T ss_pred EEEEEEECCCHHHHHHHHcCHHHhceeEc-CCc---c--eeccCCCCEEEEEecCCCceecccEEEEEEcC-------CC
Confidence 4455566443 355655544 2556621 111 1 22347898887765433323455677776665 46
Q ss_pred eEEEEeec-CCCC---cccceeEEEEEEEcCCC-eEEEEEEEEecCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 028245 137 SFGFGSGT-LQGH---LLQAGEERFSIELDDNN-QVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNAVKKHLT 209 (211)
Q Consensus 137 r~GFaYGT-LpGH---pe~~GEE~F~Ve~~~dg-~V~~~I~AFSRPa~~~~rlg~P~~r~~Qr~~~rry~~al~~~v~ 209 (211)
++.|.+.. .+|. +...+.-.|.++-.++| .|.++...|... ......+.--..++..|+..+.
T Consensus 74 ~l~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~gT~l~~~~~~~~~~----------~~~~~~~~gw~~~l~~Lk~~le 141 (146)
T 2leq_A 74 ILQYSHFSPLTGKPDLPENYHVVTITLTALKKGVEVELTQDNNETE----------KEQKHSEDNWNTMLEGLKKFLE 141 (146)
T ss_dssp EEEEECBCGGGCCCSCGGGSCEEEEEEEECSSCEEEEEEEEEESSH----------HHHHHHHHHHHHHHHHHHHHHG
T ss_pred EEEEEEccCccCCCCCCCCceEEEEEEEEcCCCeEEEEEEecCCch----------hhHhhHHhhHHHHHHHHHHHHh
Confidence 88877642 2342 22135667877766555 344444445321 1111222233456777777664
No 10
>2rde_A Uncharacterized protein VCA0042; C-DI-GMP, structural genomics, PSI protein structure initiative, northeast structural genomics consortium, NESG; HET: C2E; 1.92A {Vibrio cholerae} SCOP: b.45.2.1 b.45.2.2 PDB: 1yln_A* 3kyg_A*
Probab=22.37 E-value=2.2e+02 Score=23.05 Aligned_cols=52 Identities=15% Similarity=0.085 Sum_probs=32.5
Q ss_pred ceeeEecCC---CCCCCCcEEEEEeeecc---c-eeeeceEEEEEeecccccCCcceEEEEee
Q 028245 88 LNWAFVDPK---TPIQNGVKFCVCVKEFL---P-WVTLPLQIVYVNESIRKKKTAASFGFGSG 143 (211)
Q Consensus 88 ~~g~~V~~~---~p~~~G~~v~v~~~~~~---~-~~~~PcRVV~v~de~~~~~~~~r~GFaYG 143 (211)
.+|+.+..+ .+..+|..+.+...... . .+..+++|+++.... ...++|+-+-
T Consensus 164 ~gG~~i~~~~~~~~~~~g~~v~l~~~l~~~~~~~~~~~~~~V~~~~~~~----~~~~~Gl~F~ 222 (251)
T 2rde_A 164 RSGCRFITPPLGKTYQVGDLVALEIFSDLRGTKTFPPLTGKICNLQRSL----HHARYGLEFN 222 (251)
T ss_dssp SSEEEEEECTTSCCCCTTCEEEEEEBSSTTSSCBCSCEEEEEEEEEECS----SCEEEEEEEC
T ss_pred ccCcEEEecCCCCCcCCCCEEEEEEEcCCCCcccceeEEEEEEEeEecC----CCeEEeEEEC
Confidence 356766543 25689999988765321 1 247899999987642 2345665543
No 11
>3d8m_A BPP, baseplate protein, receptor binding protein; lactococcal phage P2, lactococcal phage TP901-1, receptor BI protein; 3.35A {Lactococcus phage tp901-1}
Probab=21.44 E-value=32 Score=27.88 Aligned_cols=25 Identities=24% Similarity=0.535 Sum_probs=22.3
Q ss_pred ecCCCCcccceeEEEEEEEcCCCeEE
Q 028245 143 GTLQGHLLQAGEERFSIELDDNNQVW 168 (211)
Q Consensus 143 GTLpGHpe~~GEE~F~Ve~~~dg~V~ 168 (211)
-.|.||.. .+-.+|.|...+||+..
T Consensus 119 ~slvgH~a-g~~~sfHIdi~p~G~~~ 143 (165)
T 3d8m_A 119 QSLVGHFA-GRDTSFHIDINPNGSIT 143 (165)
T ss_dssp EEEEEEET-TSSCEEEEEECTTSCEE
T ss_pred eEeeeeec-cCcceeEEEeCCCCcEE
Confidence 46899999 99999999999999753
No 12
>3da0_A Cleaved chimeric receptor binding protein from bacteriophages TP901-1 and P2; lactococcal phage P2; 1.65A {Lactococcus phage tp901-1}
Probab=20.95 E-value=34 Score=26.86 Aligned_cols=24 Identities=25% Similarity=0.572 Sum_probs=21.2
Q ss_pred cCCCCcccceeEEEEEEEcCCCeEE
Q 028245 144 TLQGHLLQAGEERFSIELDDNNQVW 168 (211)
Q Consensus 144 TLpGHpe~~GEE~F~Ve~~~dg~V~ 168 (211)
.|-||.. .+-++|.|+..+||++.
T Consensus 88 sLvGH~a-g~~nSFHIDi~p~Gs~t 111 (136)
T 3da0_A 88 SLVGHFA-GRDTSFHIDINPNGSIT 111 (136)
T ss_dssp EEEEEET-TSSCEEEEEECTTSCEE
T ss_pred EEEEEEc-CCCceeEEEeCCCceEE
Confidence 4779999 99999999999999754
Done!