BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028246
(211 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q93VG8|PPDEX_ARATH DeSI-like protein At4g17486 OS=Arabidopsis thaliana GN=At4g17486
PE=2 SV=1
Length = 224
Score = 196 bits (499), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 87/169 (51%), Positives = 119/169 (70%), Gaps = 5/169 (2%)
Query: 30 KAKSTSYSPGRAPVYLNVYDLTPMNGYVHWAGLGIYHSGVEVHGVEYAFGAHDYPTSGVF 89
+ +S PVYLNVYDLTP+N Y++W G+GI+HSG+E H +EY +GAH+YPTSGV+
Sbjct: 15 ERDESSGEAALTPVYLNVYDLTPVNNYLYWFGIGIFHSGIEAHNLEYCYGAHEYPTSGVY 74
Query: 90 EVEPRLCPGFKFRKSIFIGTTCLDPIQVREFMERQSAHYNGDTYHLIVKNCNHFCKDICY 149
EVEPR CPGF FR+S+ +GTT + R +ME+ S Y+GDTYHLI KNCNHF +++C
Sbjct: 75 EVEPRNCPGFIFRRSVLLGTTSMSRSDFRSYMEKLSRKYHGDTYHLIAKNCNHFTEEVCL 134
Query: 150 KLTGKPIPKWVNRLAKIGTLFLLYYFPCQGSCQFKVLSVKAPPDTCSFS 198
+LTGKPIP W+NRLA++G+ + C ++ +V A P+ FS
Sbjct: 135 QLTGKPIPGWINRLARVGS-----FCNCLLPESIQLTAVSALPERLEFS 178
>sp|Q5PQ09|DESI2_XENLA Desumoylating isopeptidase 2 OS=Xenopus laevis GN=desi2 PE=2 SV=1
Length = 192
Score = 123 bits (309), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 58/134 (43%), Positives = 82/134 (61%), Gaps = 4/134 (2%)
Query: 39 GRAPVYLNVYDLTPMNGYVHWAGLGIYHSGVEVHGVEYAFGAHDYPTSGVFEVEP----R 94
P+ LNVYD+ +N Y G+G++HSG++V+G E+A+G H YP SGVFE+ P
Sbjct: 2 ANQPIILNVYDMYWINEYTSSLGIGVFHSGIQVYGREFAYGGHPYPFSGVFEISPGDSTE 61
Query: 95 LCPGFKFRKSIFIGTTCLDPIQVREFMERQSAHYNGDTYHLIVKNCNHFCKDICYKLTGK 154
L FKF+++I +G+T + + +E Y G+ YHL+ KNCNHF + L GK
Sbjct: 62 LGDTFKFKEAIALGSTDFTENDIEKIIEELGKEYKGNAYHLMHKNCNHFSSALSEILCGK 121
Query: 155 PIPKWVNRLAKIGT 168
IP+WVNRLA T
Sbjct: 122 EIPRWVNRLAYFST 135
>sp|Q9D291|DESI2_MOUSE Desumoylating isopeptidase 2 OS=Mus musculus GN=Desi2 PE=2 SV=1
Length = 194
Score = 122 bits (306), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 80/126 (63%), Gaps = 4/126 (3%)
Query: 43 VYLNVYDLTPMNGYVHWAGLGIYHSGVEVHGVEYAFGAHDYPTSGVFEVEP----RLCPG 98
V LNVYD+ MN Y G+G++HSG+EV+G E+A+G H YP SG+FE+ P L
Sbjct: 7 VVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGET 66
Query: 99 FKFRKSIFIGTTCLDPIQVREFMERQSAHYNGDTYHLIVKNCNHFCKDICYKLTGKPIPK 158
FKF++++ +G+T + + +E Y G+ YHL+ KNCNHF + L GK IP+
Sbjct: 67 FKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPR 126
Query: 159 WVNRLA 164
W+NRLA
Sbjct: 127 WINRLA 132
>sp|Q5XIT6|DESI2_RAT Desumoylating isopeptidase 2 OS=Rattus norvegicus GN=Desi2 PE=2
SV=1
Length = 194
Score = 122 bits (305), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 80/126 (63%), Gaps = 4/126 (3%)
Query: 43 VYLNVYDLTPMNGYVHWAGLGIYHSGVEVHGVEYAFGAHDYPTSGVFEVEP----RLCPG 98
V LNVYD+ MN Y G+G++HSG+EV+G E+A+G H YP SG+FE+ P L
Sbjct: 7 VVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNAAELGET 66
Query: 99 FKFRKSIFIGTTCLDPIQVREFMERQSAHYNGDTYHLIVKNCNHFCKDICYKLTGKPIPK 158
FKF++++ +G+T + + +E Y G+ YHL+ KNCNHF + L GK IP+
Sbjct: 67 FKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPR 126
Query: 159 WVNRLA 164
W+NRLA
Sbjct: 127 WINRLA 132
>sp|Q6DC39|DESI2_DANRE Desumoylating isopeptidase 2 OS=Danio rerio GN=desi2 PE=2 SV=1
Length = 196
Score = 122 bits (305), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 80/127 (62%), Gaps = 4/127 (3%)
Query: 42 PVYLNVYDLTPMNGYVHWAGLGIYHSGVEVHGVEYAFGAHDYPTSGVFEVEP----RLCP 97
PV LNVYD+ +N + G+G++HSG+E++G E+A+G H YP SG+FE+ P L
Sbjct: 5 PVILNVYDMYWINEFTSSLGIGVFHSGIEIYGREFAYGGHPYPFSGIFEITPGDATELGE 64
Query: 98 GFKFRKSIFIGTTCLDPIQVREFMERQSAHYNGDTYHLIVKNCNHFCKDICYKLTGKPIP 157
FKF+++I +G+T V +E Y G+ YHL+ KNCNHF + L G+ IP
Sbjct: 65 TFKFKEAIVLGSTDFTEEDVERIVEEMGKEYKGNAYHLMHKNCNHFSSALSEILCGREIP 124
Query: 158 KWVNRLA 164
+WVNRLA
Sbjct: 125 RWVNRLA 131
>sp|A3QRX8|DESI2_PIG Desumoylating isopeptidase 2 OS=Sus scrofa GN=DESI2 PE=2 SV=1
Length = 194
Score = 122 bits (305), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 80/126 (63%), Gaps = 4/126 (3%)
Query: 43 VYLNVYDLTPMNGYVHWAGLGIYHSGVEVHGVEYAFGAHDYPTSGVFEVEP----RLCPG 98
V LNVYD+ MN Y G+G++HSG+EV+G E+A+G H YP SG+FE+ P L
Sbjct: 7 VVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGET 66
Query: 99 FKFRKSIFIGTTCLDPIQVREFMERQSAHYNGDTYHLIVKNCNHFCKDICYKLTGKPIPK 158
FKF++++ +G+T + + +E Y G+ YHL+ KNCNHF + L GK IP+
Sbjct: 67 FKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPR 126
Query: 159 WVNRLA 164
W+NRLA
Sbjct: 127 WINRLA 132
>sp|Q5R456|DESI2_PONAB Desumoylating isopeptidase 2 OS=Pongo abelii GN=DESI2 PE=2 SV=1
Length = 194
Score = 122 bits (305), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 80/126 (63%), Gaps = 4/126 (3%)
Query: 43 VYLNVYDLTPMNGYVHWAGLGIYHSGVEVHGVEYAFGAHDYPTSGVFEVEP----RLCPG 98
V LNVYD+ MN Y G+G++HSG+EV+G E+A+G H YP SG+FE+ P L
Sbjct: 7 VVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGET 66
Query: 99 FKFRKSIFIGTTCLDPIQVREFMERQSAHYNGDTYHLIVKNCNHFCKDICYKLTGKPIPK 158
FKF++++ +G+T + + +E Y G+ YHL+ KNCNHF + L GK IP+
Sbjct: 67 FKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPR 126
Query: 159 WVNRLA 164
W+NRLA
Sbjct: 127 WINRLA 132
>sp|Q9BSY9|DESI2_HUMAN Desumoylating isopeptidase 2 OS=Homo sapiens GN=DESI2 PE=1 SV=1
Length = 194
Score = 122 bits (305), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 80/126 (63%), Gaps = 4/126 (3%)
Query: 43 VYLNVYDLTPMNGYVHWAGLGIYHSGVEVHGVEYAFGAHDYPTSGVFEVEP----RLCPG 98
V LNVYD+ MN Y G+G++HSG+EV+G E+A+G H YP SG+FE+ P L
Sbjct: 7 VVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGET 66
Query: 99 FKFRKSIFIGTTCLDPIQVREFMERQSAHYNGDTYHLIVKNCNHFCKDICYKLTGKPIPK 158
FKF++++ +G+T + + +E Y G+ YHL+ KNCNHF + L GK IP+
Sbjct: 67 FKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPR 126
Query: 159 WVNRLA 164
W+NRLA
Sbjct: 127 WINRLA 132
>sp|Q5ZIV7|DESI2_CHICK Desumoylating isopeptidase 2 OS=Gallus gallus GN=DESI2 PE=2 SV=1
Length = 193
Score = 122 bits (305), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 80/126 (63%), Gaps = 4/126 (3%)
Query: 43 VYLNVYDLTPMNGYVHWAGLGIYHSGVEVHGVEYAFGAHDYPTSGVFEVEP----RLCPG 98
V LNVYD+ MN Y G+G++HSG+EV+G E+A+G H YP SG+FE+ P L
Sbjct: 6 VILNVYDMYWMNEYTSSLGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGET 65
Query: 99 FKFRKSIFIGTTCLDPIQVREFMERQSAHYNGDTYHLIVKNCNHFCKDICYKLTGKPIPK 158
FKF++++ +G+T + + +E + G+ YHL+ KNCNHF + L GK IP+
Sbjct: 66 FKFKEAVVLGSTDFMEDDIEKIVEELGKEFKGNAYHLMHKNCNHFSSALSEILCGKEIPR 125
Query: 159 WVNRLA 164
WVNRLA
Sbjct: 126 WVNRLA 131
>sp|Q8X1T0|HAG1_SCHPO DeSI-like protein hag1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=hag1 PE=1 SV=1
Length = 201
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 80/133 (60%), Gaps = 5/133 (3%)
Query: 43 VYLNVYDL---TPMNGYVHWAGLGIYHSGVEVHGVEYAFGAHDYP-TSGVFEVEPRL-CP 97
VY+NVYDL +P+N GLGIYH+G+ + G EYAFGAH+ P ++GVF PR
Sbjct: 3 VYINVYDLMPDSPVNKLAWTLGLGIYHTGLVLEGKEYAFGAHEIPGSTGVFATMPRPPLE 62
Query: 98 GFKFRKSIFIGTTCLDPIQVREFMERQSAHYNGDTYHLIVKNCNHFCKDICYKLTGKPIP 157
G ++R SI + L V + R S + G +Y L+ +NCNHF +LTG PIP
Sbjct: 63 GCRWRCSIALPNCTLPKPDVDRILIRLSQEFTGLSYSLLERNCNHFTNAAAIELTGSPIP 122
Query: 158 KWVNRLAKIGTLF 170
++NR+++IG F
Sbjct: 123 SFLNRISRIGLAF 135
>sp|Q4KM30|DESI1_RAT Desumoylating isopeptidase 1 OS=Rattus norvegicus GN=Desi1 PE=2
SV=1
Length = 168
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 12/133 (9%)
Query: 38 PGRAPVYLNVYDLTP-----MNGYVHWAGL-GIYHSGVEVHGVEYAFGAHDYPTSGVFEV 91
P PV L VYDL+ ++ + L GI+H+ + VH E+ FG+ SG+
Sbjct: 4 PNLYPVKLYVYDLSKGLARRLSPIMLGKQLEGIWHTSIVVHKDEFFFGS-----SGISSC 58
Query: 92 EPRLCPGFKFRKSIFIGTTCLDPIQVREFMER-QSAHYNGDTYHLIVKNCNHFCKDICYK 150
P + +G T + E++ + + G+ Y+L NCN F ++
Sbjct: 59 TPGGTLLGPPDSVVDVGNTEVTEEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVAQF 118
Query: 151 LTGKPIPKWVNRL 163
LTG+ IP ++ L
Sbjct: 119 LTGRKIPSYITDL 131
>sp|Q9CQT7|DESI1_MOUSE Desumoylating isopeptidase 1 OS=Mus musculus GN=Desi1 PE=1 SV=1
Length = 168
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 12/133 (9%)
Query: 38 PGRAPVYLNVYDLTP-----MNGYVHWAGL-GIYHSGVEVHGVEYAFGAHDYPTSGVFEV 91
P PV L VYDL+ ++ + L GI+H+ + VH E+ FG+ SG+
Sbjct: 4 PNLYPVKLYVYDLSKGLARRLSPIMLGKQLEGIWHTSIVVHKDEFFFGS-----SGISSC 58
Query: 92 EPRLCPGFKFRKSIFIGTTCLDPIQVREFMER-QSAHYNGDTYHLIVKNCNHFCKDICYK 150
P + +G T + E++ + + G+ Y+L NCN F ++
Sbjct: 59 TPGGTLLGPPDSVVDVGNTEVTEEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVAQF 118
Query: 151 LTGKPIPKWVNRL 163
LTG+ IP ++ L
Sbjct: 119 LTGRKIPSYITDL 131
>sp|Q6ICB0|DESI1_HUMAN Desumoylating isopeptidase 1 OS=Homo sapiens GN=DESI1 PE=1 SV=1
Length = 168
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 18/136 (13%)
Query: 38 PGRAPVYLNVYDLTP-----MNGYVHWAGL-GIYHSGVEVHGVEYAFGAHDY---PTSGV 88
P PV L VYDL+ ++ + L GI+H+ + VH E+ FG+ P G
Sbjct: 4 PNLYPVKLYVYDLSKGLARRLSPIMLGKQLEGIWHTSIVVHKDEFFFGSGGISSCPPGGT 63
Query: 89 FEVEPRLCPGFKFRKSIFIGTTCLDPIQVREFMER-QSAHYNGDTYHLIVKNCNHFCKDI 147
P + +G+T + E++ + + G+ Y+L NCN F ++
Sbjct: 64 LLGPPD--------SVVDVGSTEVTEEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEV 115
Query: 148 CYKLTGKPIPKWVNRL 163
LTG+ IP ++ L
Sbjct: 116 AQFLTGRKIPSYITDL 131
>sp|Q6GLM5|DESI1_XENLA Desumoylating isopeptidase 1 OS=Xenopus laevis GN=desi1 PE=2 SV=1
Length = 169
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 128 YNGDTYHLIVKNCNHFCKDICYKLTGKPIPKWVNRL 163
++G++YHL NCN F ++ LTGK IP ++ L
Sbjct: 97 FSGESYHLFDHNCNTFSNEVAQFLTGKKIPSYITEL 132
>sp|P76065|YDAU_ECOLI Uncharacterized protein YdaU OS=Escherichia coli (strain K12)
GN=ydaU PE=4 SV=1
Length = 285
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 120 FMERQSAHYNGDTYHLIVKNCNHFCKDI-CYKLTGKPIPKWVNRLAKIGTLFLLYYFPCQ 178
+M+ A Y DT HL + + + Y TGKPIPK NRLAKI L + +
Sbjct: 23 YMQLYIADYLADTMHLSAEEHGAYLLLMFNYWQTGKPIPK--NRLAKIARLTNERWADVE 80
Query: 179 GSCQ 182
S Q
Sbjct: 81 PSLQ 84
>sp|Q9DE07|NBN_CHICK Nibrin OS=Gallus gallus GN=NBN PE=1 SV=1
Length = 753
Score = 33.1 bits (74), Expect = 1.4, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 20/115 (17%)
Query: 63 GIYHSGVEVHGVEYAFGAHDYPTSGVFEVEPRLCPGFKFR---KSIFIGTTCLDPIQ--- 116
G + +G ++ G + + D GVFE KFR +S+ + ++CLD Q
Sbjct: 73 GTFVNGSKLSGASRSLQSGDRVNFGVFES--------KFRVEYESLVVCSSCLDVAQKTA 124
Query: 117 VREFMERQSA----HYNGDTYHLIVKNCNHFCKDICYKLTGKPI--PKWVNRLAK 165
+ E +++ + + HLI+++ K IC + G+PI P++ + L K
Sbjct: 125 LNEAIQQLGGLVVNEWTKECTHLIMESVKVTVKTICALICGRPIVKPEFFSELMK 179
>sp|P09560|RAF1_XENLA RAF proto-oncogene serine/threonine-protein kinase OS=Xenopus
laevis GN=raf1 PE=2 SV=1
Length = 638
Score = 31.2 bits (69), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 95 LCPGFKFRKSIFIGTTCLDPIQVREFMERQSAHYNG 130
L GF F++S+F G++C+ P V +F ++ A +G
Sbjct: 11 LSNGFGFKESVFEGSSCMSPTIVHQFGYQRRASDDG 46
>sp|Q49Y20|PRMA_STAS1 Ribosomal protein L11 methyltransferase OS=Staphylococcus
saprophyticus subsp. saprophyticus (strain ATCC 15305 /
DSM 20229) GN=prmA PE=3 SV=1
Length = 312
Score = 31.2 bits (69), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 12/91 (13%)
Query: 41 APVYLNVYDLTPMNGYVHWAGLGIYHSGVEVHGVEYAFGAHDYPTSGVF----------- 89
+P+ N+ + NG V + H + +G YA A DYPT GV
Sbjct: 15 SPIITNLLEDYGSNGVVIEDSEDLTHDFEDKYGEIYALNAEDYPTQGVRVKAYFNEIKYT 74
Query: 90 -EVEPRLCPGFKFRKSIFIGTTCLDPIQVRE 119
+ + +L K +S+ + D +RE
Sbjct: 75 KDFQEKLIQSLKDIESLDLDLFSFDEQTIRE 105
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.141 0.469
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,295,079
Number of Sequences: 539616
Number of extensions: 3500561
Number of successful extensions: 4996
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4967
Number of HSP's gapped (non-prelim): 18
length of query: 211
length of database: 191,569,459
effective HSP length: 112
effective length of query: 99
effective length of database: 131,132,467
effective search space: 12982114233
effective search space used: 12982114233
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)