Query 028246
Match_columns 211
No_of_seqs 119 out of 460
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 08:32:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028246.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028246hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0324 Uncharacterized conser 100.0 7E-51 1.5E-55 348.5 14.1 145 39-186 12-156 (214)
2 PF05903 Peptidase_C97: PPPDE 100.0 7.9E-46 1.7E-50 303.2 9.5 128 41-168 1-138 (151)
3 PF04970 LRAT: Lecithin retino 94.9 0.021 4.6E-07 44.7 2.7 36 109-147 83-119 (125)
4 PF05608 DUF778: Protein of un 94.4 0.098 2.1E-06 42.9 5.5 40 113-152 75-114 (136)
5 PF09601 DUF2459: Protein of u 71.3 5.3 0.00012 33.7 3.7 43 110-153 96-161 (173)
6 PF08405 Calici_PP_N: Viral po 67.0 8.3 0.00018 36.0 4.2 75 63-151 21-98 (358)
7 PF13387 DUF4105: Domain of un 61.2 9.6 0.00021 31.6 3.3 55 104-158 97-155 (176)
8 KOG3150 Uncharacterized conser 52.5 26 0.00056 29.9 4.4 52 101-152 76-130 (182)
9 PF04046 PSP: PSP; InterPro: 39.5 27 0.00059 23.9 2.2 25 143-167 5-31 (48)
10 smart00581 PSP proline-rich do 36.4 34 0.00074 24.0 2.3 25 143-167 9-35 (54)
11 PF13964 Kelch_6: Kelch motif 31.7 42 0.00091 21.5 2.1 20 64-83 3-22 (50)
12 PF07646 Kelch_2: Kelch motif; 29.8 53 0.0012 21.0 2.4 17 65-81 4-20 (49)
13 cd01781 AF6_RA_repeat2 Ubiquit 29.5 1.3E+02 0.0027 23.6 4.7 52 87-139 2-55 (100)
14 PF11931 DUF3449: Domain of un 28.3 19 0.00042 31.3 0.0 19 152-170 84-102 (196)
15 PF15643 Tox-PL-2: Papain fold 27.9 44 0.00095 26.2 1.9 45 114-165 2-46 (100)
16 PF12419 DUF3670: SNF2 Helicas 26.6 80 0.0017 25.4 3.3 25 99-123 71-95 (141)
17 PF11022 DUF2611: Protein of u 24.6 62 0.0013 23.8 2.1 20 151-170 7-26 (71)
18 cd02998 PDI_a_ERp38 PDIa famil 24.1 32 0.00069 24.4 0.5 46 116-161 35-81 (105)
19 PF13854 Kelch_5: Kelch motif 22.8 89 0.0019 19.6 2.4 18 65-82 7-24 (42)
20 PF04412 DUF521: Protein of un 22.4 95 0.002 29.7 3.4 46 109-155 267-316 (400)
21 cd02860 Pullulanase_N_term Pul 20.1 2E+02 0.0043 21.2 4.1 39 41-79 20-65 (100)
No 1
>KOG0324 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=7e-51 Score=348.47 Aligned_cols=145 Identities=57% Similarity=1.081 Sum_probs=137.6
Q ss_pred CCccEEEEEeeCCCCcccceeccceeEeeeEEEeCeEEEEcccCCCCCCeEEecCCCCCCCCeEEEEEecCeeCCHHHHH
Q 028246 39 GRAPVYLNVYDLTPMNGYVHWAGLGIYHSGVEVHGVEYAFGAHDYPTSGVFEVEPRLCPGFKFRKSIFIGTTCLDPIQVR 118 (211)
Q Consensus 39 ~~~~V~LnVYDLs~~n~~~~~lG~GiyHTgVeV~G~EY~FG~~~~~~sGI~~~~P~~~pg~~~resI~lG~T~lt~~e~~ 118 (211)
...+|+|||||+++.|.++.++|+|||||||||||+||+||+|+++.+|||+++|+.+++++||++|.||.|++++++|+
T Consensus 12 ~~~~v~lnvyd~~~~n~y~~~lGlGIfHSgIeV~g~EyayG~h~~~~sGIfe~~P~~~~~f~fr~sI~lG~Td~~~~~v~ 91 (214)
T KOG0324|consen 12 GRVPVYLNVYDLTPINKYLYWLGLGIFHSGIEVHGVEYAYGAHEYPSSGIFEVEPGNCPEFTFRKSILLGSTDLTEDDVR 91 (214)
T ss_pred cceeeeeeeecceehhhhhhhhcceeEeeeEEEeceeeeccccccCCCCeEeeCCCCCCCCceeEEEEecCCCCCHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccCCCCCccccccccchHHHHHHHHhcCCCCChHHHhhHhhhhHhhhhccCCCCCCcceec
Q 028246 119 EFMERQSAHYNGDTYHLIVKNCNHFCKDICYKLTGKPIPKWVNRLAKIGTLFLLYYFPCQGSCQFKVL 186 (211)
Q Consensus 119 ~~l~~l~~~f~~~tY~Ll~~NCNhFS~el~~~L~Gk~IP~~I~rla~iG~~~~p~~~~c~lp~~~~~~ 186 (211)
+||++|+++|+|++||||.|||||||+++|++|+||+||+||||||++|.- ++++|++|..+..+
T Consensus 92 ~~le~L~~ey~G~~YhL~~kNCNHFsn~la~~Ltgk~IP~winrLa~~~~~---~~~~~~~p~~~~~t 156 (214)
T KOG0324|consen 92 RILEELSEEYRGNSYHLLTKNCNHFSNELALQLTGKKIPSWVNRLARAGLC---SLCNCLLPMLQNLT 156 (214)
T ss_pred HHHHHHHhhcCCceehhhhhccchhHHHHHHHHcCCCccHHHHHHHHHhhh---hHHhhcchhhhcCC
Confidence 999999999999999999999999999999999999999999999999953 34499998665443
No 2
>PF05903 Peptidase_C97: PPPDE putative peptidase domain; InterPro: IPR008580 This domain consists of the N-terminal portion of several eukaryotic sequences. The function of this domain is unknown.; PDB: 2WP7_A 3EBQ_A.
Probab=100.00 E-value=7.9e-46 Score=303.17 Aligned_cols=128 Identities=55% Similarity=1.016 Sum_probs=98.2
Q ss_pred ccEEEEEeeCCCCcc------cceeccc---eeEeeeEEEeCeEEEEcccCCCCCCeEEecCCC-CCCCCeEEEEEecCe
Q 028246 41 APVYLNVYDLTPMNG------YVHWAGL---GIYHSGVEVHGVEYAFGAHDYPTSGVFEVEPRL-CPGFKFRKSIFIGTT 110 (211)
Q Consensus 41 ~~V~LnVYDLs~~n~------~~~~lG~---GiyHTgVeV~G~EY~FG~~~~~~sGI~~~~P~~-~pg~~~resI~lG~T 110 (211)
.+|+||||||++.+. ...++|. |||||||||+|+||+||+++.+.+||+.+.|+. .++.+++++|.||+|
T Consensus 1 h~V~L~vYDL~~~~~~~~~~~~~~~lG~~~~Gi~HtgV~v~G~Ey~fg~~~~~~~GI~~~~P~~~~~~~~~~~~i~lG~T 80 (151)
T PF05903_consen 1 HPVYLNVYDLSPINNGMARQLSLMWLGLQIDGIYHTGVEVYGKEYAFGGHDDPDSGIFECPPGHTSPGGTPRESIELGET 80 (151)
T ss_dssp -EEEEEEEETT---TTHHHHHHHHHCSS-----EEEEEEETTEEEEEET-----TECEEESTT-STT--S-SEEEEEEEE
T ss_pred CeEEEEEEECccccchhHHHhhHhhhCCccCceEEEEEEEccEEEEecccccccCcceEccCcCCCCCcceEEEEeCCCc
Confidence 379999999996544 3456897 999999999999999999998889999999998 788899999999999
Q ss_pred eCCHHHHHHHHHHhcccCCCCCccccccccchHHHHHHHHhcCCCCChHHHhhHhhhh
Q 028246 111 CLDPIQVREFMERQSAHYNGDTYHLIVKNCNHFCKDICYKLTGKPIPKWVNRLAKIGT 168 (211)
Q Consensus 111 ~lt~~e~~~~l~~l~~~f~~~tY~Ll~~NCNhFS~el~~~L~Gk~IP~~I~rla~iG~ 168 (211)
.+++++|+++|++|+++|++++||||+||||||||+||++|+|++||+||+|+|+++.
T Consensus 81 ~~~~~~~~~~l~~l~~~~~~~~Y~Ll~~NCNhFs~~l~~~L~g~~iP~~i~~~a~~~~ 138 (151)
T PF05903_consen 81 TLSEEEFEEILRSLSREFTGDSYHLLNRNCNHFSDALCQFLTGKPIPSWINRLARIAL 138 (151)
T ss_dssp ---HHHHHHHHHHHHTT-SGGG-BTTTBSHHHHHHHHHHHHHS----HHHHTHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhccCCcchhhhhhhhHHHHHHHHHhCCCCCCHHHHhhhHHhc
Confidence 9999999999999999999999999999999999999999999999999999998665
No 3
>PF04970 LRAT: Lecithin retinol acyltransferase; InterPro: IPR007053 This entry represents a conserved sequence region found in proteins from viruses, bacteria and eukaryotes. It contains a well-conserved NCEHF motif, though its function in these proteins is unknown.; PDB: 2KYT_A 4DOT_A 4FA0_A.
Probab=94.90 E-value=0.021 Score=44.67 Aligned_cols=36 Identities=28% Similarity=0.520 Sum_probs=18.1
Q ss_pred CeeCCHHHHHHHHH-HhcccCCCCCccccccccchHHHHH
Q 028246 109 TTCLDPIQVREFME-RQSAHYNGDTYHLIVKNCNHFCKDI 147 (211)
Q Consensus 109 ~T~lt~~e~~~~l~-~l~~~f~~~tY~Ll~~NCNhFS~el 147 (211)
....+.+++-+-.. .|..++ .|||+.+||-||+...
T Consensus 83 ~~~~~~~~iv~rA~~~lg~~~---~Y~l~~nNCEhFa~~c 119 (125)
T PF04970_consen 83 YKPFPPEEIVERAESRLGKEF---EYNLLFNNCEHFATWC 119 (125)
T ss_dssp S--S-HHHHHHHHHHTTT-EE---SS---HHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHcCCC---ccCCCcCCHHHHHHHH
Confidence 34455555444333 333333 8999999999998654
No 4
>PF05608 DUF778: Protein of unknown function (DUF778); InterPro: IPR008496 This family consists of several eukaryotic proteins of unknown function.
Probab=94.42 E-value=0.098 Score=42.90 Aligned_cols=40 Identities=18% Similarity=0.429 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHhcccCCCCCccccccccchHHHHHHHHhc
Q 028246 113 DPIQVREFMERQSAHYNGDTYHLIVKNCNHFCKDICYKLT 152 (211)
Q Consensus 113 t~~e~~~~l~~l~~~f~~~tY~Ll~~NCNhFS~el~~~L~ 152 (211)
+.++..+.|++-.++|....|||+..||.+|.....+.|.
T Consensus 75 ~~~~wD~Av~~a~~~y~~r~yNlf~~NCHSfVA~aLN~m~ 114 (136)
T PF05608_consen 75 GAESWDDAVQKASEEYKHRMYNLFTDNCHSFVANALNRMR 114 (136)
T ss_pred cHHHHHHHHHHHHHHHhhCceeeeccCcHHHHHHHHHhcc
Confidence 4567777888888999999999999999999988888774
No 5
>PF09601 DUF2459: Protein of unknown function (DUF2459); InterPro: IPR011727 This conserved hypothetical protein of unknown function is predominantly found in proteobacteria. Its function is unknown and its genome context is not well-conserved. It is found amid urease genes in at least one species.
Probab=71.26 E-value=5.3 Score=33.68 Aligned_cols=43 Identities=21% Similarity=0.279 Sum_probs=32.2
Q ss_pred eeCCHHHHHHHHHHhcccCCCC-----------------------CccccccccchHHHHHHHHhcC
Q 028246 110 TCLDPIQVREFMERQSAHYNGD-----------------------TYHLIVKNCNHFCKDICYKLTG 153 (211)
Q Consensus 110 T~lt~~e~~~~l~~l~~~f~~~-----------------------tY~Ll~~NCNhFS~el~~~L~G 153 (211)
..+++++++++++.++..|.-+ +|+| -++||+-+++..+...-
T Consensus 96 i~ls~~~y~~L~~~I~~sf~~~~~g~~~~i~~~y~~~d~Fy~A~G~Y~l-~~TCNtWta~~L~aaG~ 161 (173)
T PF09601_consen 96 IRLSEAQYRRLVAFIRASFQRDADGRPIPIGPGYGPDDAFYEAKGRYSL-FNTCNTWTARALKAAGL 161 (173)
T ss_pred EEcCHHHHHHHHHHHHHHhccCCCCCeEEeccccCCCCeeEeeccceEe-ecCcHHHHHHHHHHcCC
Confidence 3679999999998877655543 4564 47999999998887643
No 6
>PF08405 Calici_PP_N: Viral polyprotein N-terminal; InterPro: IPR013614 This domain is found at the N terminus of non-structural viral polyproteins of the Caliciviridae subfamily. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity, 0044419 interspecies interaction between organisms
Probab=67.01 E-value=8.3 Score=36.05 Aligned_cols=75 Identities=25% Similarity=0.538 Sum_probs=43.8
Q ss_pred eeEeeeEEEeCeEEEEcccCCC---CCCeEEecCCCCCCCCeEEEEEecCeeCCHHHHHHHHHHhcccCCCCCccccccc
Q 028246 63 GIYHSGVEVHGVEYAFGAHDYP---TSGVFEVEPRLCPGFKFRKSIFIGTTCLDPIQVREFMERQSAHYNGDTYHLIVKN 139 (211)
Q Consensus 63 GiyHTgVeV~G~EY~FG~~~~~---~sGI~~~~P~~~pg~~~resI~lG~T~lt~~e~~~~l~~l~~~f~~~tY~Ll~~N 139 (211)
-+||-||-|.+ -+.+|-|..+ +.|-....|-. +-+| .++.-+-.++.+++.+.+. +.| -|..+.+|
T Consensus 21 ~~yHYaIYi~~-G~~lgvh~p~aai~~a~i~l~~ls---~~WR-vvy~P~~~~~~~~L~~l~g---e~~---PY~a~~nN 89 (358)
T PF08405_consen 21 DIYHYAIYIGK-GLVLGVHSPGAAISIATIELEPLS---LWWR-VVYTPRQRLSYDQLRKLEG---EKF---PYAAFTNN 89 (358)
T ss_pred eeEEEEEEecC-CeEEeecCcchhceeeeEEEeecc---cccc-cccCCCCCCCHHHHHHhcC---CCC---Cchhhccc
Confidence 58999998743 5666766443 22333333422 2223 2333334466666555433 355 49999999
Q ss_pred cchHHHHHHHHh
Q 028246 140 CNHFCKDICYKL 151 (211)
Q Consensus 140 CNhFS~el~~~L 151 (211)
|=||| |+-|
T Consensus 90 Cy~fc---c~vl 98 (358)
T PF08405_consen 90 CYTFC---CWVL 98 (358)
T ss_pred hHHHh---Hhhc
Confidence 99999 6644
No 7
>PF13387 DUF4105: Domain of unknown function (DUF4105)
Probab=61.23 E-value=9.6 Score=31.58 Aligned_cols=55 Identities=15% Similarity=0.245 Sum_probs=41.1
Q ss_pred EEEecCeeCCHHHHHHHHHHhc----ccCCCCCccccccccchHHHHHHHHhcCCCCCh
Q 028246 104 SIFIGTTCLDPIQVREFMERQS----AHYNGDTYHLIVKNCNHFCKDICYKLTGKPIPK 158 (211)
Q Consensus 104 sI~lG~T~lt~~e~~~~l~~l~----~~f~~~tY~Ll~~NCNhFS~el~~~L~Gk~IP~ 158 (211)
.|..=...++++|.+.++..|- +.-++-.||.+..||=.-.-++.....++.++-
T Consensus 97 ~v~~y~LnLs~ee~~~l~~~l~e~~~~~~~~~~Y~f~~~NCat~i~~~l~~~~~~~l~~ 155 (176)
T PF13387_consen 97 DVWEYPLNLSPEEKQRLFRHLWENANPENRPYRYNFFTDNCATRIRDLLDKARPGSLPL 155 (176)
T ss_pred cEEEEEeeCCHHHHHHHHHHHHHhccccccceeehhhhcchHHHHHHHHHHHcCCCeec
Confidence 3444456789999988887663 233666999999999999988888887764443
No 8
>KOG3150 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.52 E-value=26 Score=29.93 Aligned_cols=52 Identities=12% Similarity=0.207 Sum_probs=39.2
Q ss_pred eEEEEEecCeeC---CHHHHHHHHHHhcccCCCCCccccccccchHHHHHHHHhc
Q 028246 101 FRKSIFIGTTCL---DPIQVREFMERQSAHYNGDTYHLIVKNCNHFCKDICYKLT 152 (211)
Q Consensus 101 ~resI~lG~T~l---t~~e~~~~l~~l~~~f~~~tY~Ll~~NCNhFS~el~~~L~ 152 (211)
+-+-+.|+.+.. .+....+.+.+-+++|...+|||+.-||..|-.-...+|.
T Consensus 76 paRY~ql~p~~~~~~g~~~wD~Av~~as~~y~hr~hNi~cdNCHShVA~aLn~mr 130 (182)
T KOG3150|consen 76 PARYIQLDPEKVCGPGARTWDNAVSKASREYKHRTHNIFCDNCHSHVANALNRMR 130 (182)
T ss_pred cceeEEeChhheeCCCCchHHHHHHHHHHHhhhcccceeeccHHHHHHHHHHHhh
Confidence 333455555432 4456788899999999999999999999999876666664
No 9
>PF04046 PSP: PSP; InterPro: IPR006568 PSP is a proline-rich domain of unknown function found in spliceosome associated proteins.
Probab=39.49 E-value=27 Score=23.88 Aligned_cols=25 Identities=20% Similarity=0.574 Sum_probs=20.5
Q ss_pred HHHHHHHHhc--CCCCChHHHhhHhhh
Q 028246 143 FCKDICYKLT--GKPIPKWVNRLAKIG 167 (211)
Q Consensus 143 FS~el~~~L~--Gk~IP~~I~rla~iG 167 (211)
.|+++-++|. ....|.||.++.++|
T Consensus 5 lS~~LR~ALg~~~~~~PPwl~~M~~~G 31 (48)
T PF04046_consen 5 LSDELREALGMQENDPPPWLYRMRRLG 31 (48)
T ss_pred cCHHHHHHcCCCCCCCChHHHHHHhcC
Confidence 4678888874 467999999999998
No 10
>smart00581 PSP proline-rich domain in spliceosome associated proteins.
Probab=36.38 E-value=34 Score=23.98 Aligned_cols=25 Identities=20% Similarity=0.531 Sum_probs=20.4
Q ss_pred HHHHHHHHhc--CCCCChHHHhhHhhh
Q 028246 143 FCKDICYKLT--GKPIPKWVNRLAKIG 167 (211)
Q Consensus 143 FS~el~~~L~--Gk~IP~~I~rla~iG 167 (211)
-|+++-++|. ...+|.|+.++.++|
T Consensus 9 lS~~LR~ALG~~~~~pPPWl~~Mq~~G 35 (54)
T smart00581 9 ISDELREALGLPPGQPPPWLYRMRRLG 35 (54)
T ss_pred CCHHHHHHcCCCCCCCChHHHHHHHHC
Confidence 3678888884 357999999999998
No 11
>PF13964 Kelch_6: Kelch motif
Probab=31.68 E-value=42 Score=21.47 Aligned_cols=20 Identities=45% Similarity=0.547 Sum_probs=16.6
Q ss_pred eEeeeEEEeCeEEEEcccCC
Q 028246 64 IYHSGVEVHGVEYAFGAHDY 83 (211)
Q Consensus 64 iyHTgVeV~G~EY~FG~~~~ 83 (211)
..|+.|.+.|+-|.|||...
T Consensus 3 ~~~s~v~~~~~iyv~GG~~~ 22 (50)
T PF13964_consen 3 YGHSAVVVGGKIYVFGGYDN 22 (50)
T ss_pred ccCEEEEECCEEEEECCCCC
Confidence 36889999999999998543
No 12
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=29.76 E-value=53 Score=21.04 Aligned_cols=17 Identities=41% Similarity=0.597 Sum_probs=15.3
Q ss_pred EeeeEEEeCeEEEEccc
Q 028246 65 YHSGVEVHGVEYAFGAH 81 (211)
Q Consensus 65 yHTgVeV~G~EY~FG~~ 81 (211)
-|+.+++.++-|.|||.
T Consensus 4 ~hs~~~~~~kiyv~GG~ 20 (49)
T PF07646_consen 4 GHSAVVLDGKIYVFGGY 20 (49)
T ss_pred ceEEEEECCEEEEECCc
Confidence 48999999999999986
No 13
>cd01781 AF6_RA_repeat2 Ubiquitin domain of AT-6, second repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=29.53 E-value=1.3e+02 Score=23.59 Aligned_cols=52 Identities=17% Similarity=0.258 Sum_probs=36.4
Q ss_pred CeEEecCCCC-CCCCeEEEEEecCeeCCHHHHHHHHHHhc-ccCCCCCccccccc
Q 028246 87 GVFEVEPRLC-PGFKFRKSIFIGTTCLDPIQVREFMERQS-AHYNGDTYHLIVKN 139 (211)
Q Consensus 87 GI~~~~P~~~-pg~~~resI~lG~T~lt~~e~~~~l~~l~-~~f~~~tY~Ll~~N 139 (211)
|+..+-|+.- ++.+|+ +|.+-.++.+++.+.+.|+... +.-.++.|.|..-+
T Consensus 2 G~LKIYg~~L~~~~~YK-SIlvt~~~~a~~vV~eALeKygL~~e~p~~Y~LveV~ 55 (100)
T cd01781 2 GTLKIYGGSLVPTRPYK-TILLSINDNADRIVGEALEKYGLEKSDPDDYCLVEVS 55 (100)
T ss_pred CeEEEcCCcccCCCCeE-EEEecCCccHHHHHHHHHHHhCCCccCccceEEEEEe
Confidence 4444444433 555666 9999999999999999998765 55567777766543
No 14
>PF11931 DUF3449: Domain of unknown function (DUF3449); InterPro: IPR024598 This presumed domain is functionally uncharacterised. It has two conserved sequence motifs: PIP and CEICG and contains a zinc-finger of the C2H2-type.; PDB: 4DGW_A.
Probab=28.30 E-value=19 Score=31.26 Aligned_cols=19 Identities=42% Similarity=1.017 Sum_probs=0.0
Q ss_pred cCCCCChHHHhhHhhhhHh
Q 028246 152 TGKPIPKWVNRLAKIGTLF 170 (211)
Q Consensus 152 ~Gk~IP~~I~rla~iG~~~ 170 (211)
-||+||-|+-.|.-+|.-+
T Consensus 84 DGkPIPyWLYKLhGL~~ey 102 (196)
T PF11931_consen 84 DGKPIPYWLYKLHGLGVEY 102 (196)
T ss_dssp -------------------
T ss_pred CCCcccHHHHHHhCCCCee
Confidence 3799999999999988776
No 15
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=27.90 E-value=44 Score=26.24 Aligned_cols=45 Identities=20% Similarity=0.347 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhcccCCCCCccccccccchHHHHHHHHhcCCCCChHHHhhHh
Q 028246 114 PIQVREFMERQSAHYNGDTYHLIVKNCNHFCKDICYKLTGKPIPKWVNRLAK 165 (211)
Q Consensus 114 ~~e~~~~l~~l~~~f~~~tY~Ll~~NCNhFS~el~~~L~Gk~IP~~I~rla~ 165 (211)
++++...+..+..+|. ---|--|++|+.++|.-++||.-+.++-.
T Consensus 2 ~~~~~Q~I~~I~~~f~-------~~qC~~cA~Al~~~L~~~gI~Gk~i~l~T 46 (100)
T PF15643_consen 2 PAEVRQQIGKIASRFK-------IFQCVECASALKQFLKQAGIPGKIIRLYT 46 (100)
T ss_pred HHHHHHHHHHhhcccC-------ceehHHHHHHHHHHHHHCCCCceEEEEEe
Confidence 5678888888887774 33599999999999999999998887753
No 16
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=26.62 E-value=80 Score=25.37 Aligned_cols=25 Identities=16% Similarity=0.356 Sum_probs=22.7
Q ss_pred CCeEEEEEecCeeCCHHHHHHHHHH
Q 028246 99 FKFRKSIFIGTTCLDPIQVREFMER 123 (211)
Q Consensus 99 ~~~resI~lG~T~lt~~e~~~~l~~ 123 (211)
..|+=++.+|...+|++||+++++.
T Consensus 71 ~~f~W~lalGd~~Ls~eEf~~L~~~ 95 (141)
T PF12419_consen 71 LDFDWELALGDEELSEEEFEQLVEQ 95 (141)
T ss_pred hcceEEEEECCEECCHHHHHHHHHc
Confidence 5688899999999999999999985
No 17
>PF11022 DUF2611: Protein of unknown function (DUF2611); InterPro: IPR021278 This family is conserved in the Dikarya of Fungi. The function is not known.
Probab=24.65 E-value=62 Score=23.81 Aligned_cols=20 Identities=25% Similarity=0.554 Sum_probs=18.3
Q ss_pred hcCCCCChHHHhhHhhhhHh
Q 028246 151 LTGKPIPKWVNRLAKIGTLF 170 (211)
Q Consensus 151 L~Gk~IP~~I~rla~iG~~~ 170 (211)
+.|+.||++++.++.+|..+
T Consensus 7 I~Gr~V~~H~LAi~tLg~~~ 26 (71)
T PF11022_consen 7 IFGRQVQSHYLAIATLGTVF 26 (71)
T ss_pred ecccccccchhHHHHHHHHH
Confidence 56999999999999999887
No 18
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=24.11 E-value=32 Score=24.40 Aligned_cols=46 Identities=15% Similarity=0.145 Sum_probs=34.2
Q ss_pred HHHHHHHHhcccCCC-CCccccccccchHHHHHHHHhcCCCCChHHH
Q 028246 116 QVREFMERQSAHYNG-DTYHLIVKNCNHFCKDICYKLTGKPIPKWVN 161 (211)
Q Consensus 116 e~~~~l~~l~~~f~~-~tY~Ll~~NCNhFS~el~~~L~Gk~IP~~I~ 161 (211)
++...++++.+++.. ..+.++.=||+....++|+.+....+|..+.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 35 NLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred hhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence 455666666666653 4578888999997678899888888888553
No 19
>PF13854 Kelch_5: Kelch motif
Probab=22.79 E-value=89 Score=19.58 Aligned_cols=18 Identities=39% Similarity=0.429 Sum_probs=15.4
Q ss_pred EeeeEEEeCeEEEEcccC
Q 028246 65 YHSGVEVHGVEYAFGAHD 82 (211)
Q Consensus 65 yHTgVeV~G~EY~FG~~~ 82 (211)
-|+.+.+.++-|-|||..
T Consensus 7 ~hs~~~~~~~iyi~GG~~ 24 (42)
T PF13854_consen 7 GHSAVVVGNNIYIFGGYS 24 (42)
T ss_pred ceEEEEECCEEEEEcCcc
Confidence 589999999999999844
No 20
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=22.39 E-value=95 Score=29.71 Aligned_cols=46 Identities=17% Similarity=0.377 Sum_probs=37.6
Q ss_pred CeeCCHHHHHHHHHHhcccCCCCCccccccccchHH----HHHHHHhcCCC
Q 028246 109 TTCLDPIQVREFMERQSAHYNGDTYHLIVKNCNHFC----KDICYKLTGKP 155 (211)
Q Consensus 109 ~T~lt~~e~~~~l~~l~~~f~~~tY~Ll~~NCNhFS----~el~~~L~Gk~ 155 (211)
+..++.+++++..+++. .-..+.-|++.==|+||| .++++.|-|++
T Consensus 267 ~i~i~~~dl~~~~~~l~-~~~~~~~D~V~lGcPH~S~~El~~ia~ll~gr~ 316 (400)
T PF04412_consen 267 RITITDADLEEVYEELN-TAGDEKVDLVALGCPHLSLEELREIAELLEGRK 316 (400)
T ss_pred EEEeCHHHHHHHHHHhc-cCCCCCCCEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 35568899999999886 677889999999999999 46677777765
No 21
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=20.06 E-value=2e+02 Score=21.15 Aligned_cols=39 Identities=18% Similarity=0.262 Sum_probs=23.9
Q ss_pred ccEEEEEeeCCCC-cc-cceec---cceeEeeeEE--EeCeEEEEc
Q 028246 41 APVYLNVYDLTPM-NG-YVHWA---GLGIYHSGVE--VHGVEYAFG 79 (211)
Q Consensus 41 ~~V~LnVYDLs~~-n~-~~~~l---G~GiyHTgVe--V~G~EY~FG 79 (211)
..|.|.+|+-... .. ....+ ..|+||.-|. ..|..|.|-
T Consensus 20 ~~V~L~l~~~~~~~~~~~~~~m~~~~~gvw~~~v~~~~~g~~Y~y~ 65 (100)
T cd02860 20 QSVKLLLYDKDDQDKVLETVQMKRGENGVWSVTLDGDLEGYYYLYE 65 (100)
T ss_pred cEEEEEEEcCCCCCCcceeEeeecCCCCEEEEEeCCccCCcEEEEE
Confidence 6799999983221 11 11122 3699998886 357778774
Done!