Query 028246
Match_columns 211
No_of_seqs 119 out of 460
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 13:50:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028246.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028246hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wp7_A PPPDE peptidase domain- 100.0 3.5E-50 1.2E-54 334.3 12.4 135 39-178 5-152 (168)
2 2lkt_A Retinoic acid receptor 93.1 0.034 1.2E-06 42.5 1.8 33 112-147 87-120 (125)
3 4dot_A Group XVI phospholipase 93.0 0.039 1.3E-06 44.1 2.1 19 131-149 104-122 (140)
4 4dpz_X HRAS-like suppressor 2; 92.8 0.033 1.1E-06 44.4 1.3 18 131-148 104-121 (137)
5 1rpq_W Peptide E131; receptor- 26.6 16 0.00054 20.8 0.3 13 139-151 2-14 (26)
6 1sn9_A BBAT, tetrameric beta-B 24.1 45 0.0015 18.9 1.8 16 128-151 2-17 (26)
7 2wj8_A Nucleoprotein; RNA bind 15.9 86 0.0029 28.3 2.8 42 105-148 270-325 (391)
8 4h62_V Mediator of RNA polymer 15.7 46 0.0016 19.6 0.7 17 108-124 5-21 (31)
9 3qbc_A 2-amino-4-hydroxy-6-hyd 12.8 3.7E+02 0.013 21.3 5.6 49 86-134 41-98 (161)
10 3imo_A Integron cassette prote 12.8 4.8E+02 0.016 20.3 6.0 49 69-123 84-132 (133)
No 1
>2wp7_A PPPDE peptidase domain-containing protein 2; hydrolase, phosphoprotein, ubiquitin-like protein; 1.90A {Mus musculus} PDB: 3ebq_A
Probab=100.00 E-value=3.5e-50 Score=334.30 Aligned_cols=135 Identities=27% Similarity=0.446 Sum_probs=125.5
Q ss_pred CCccEEEEEeeCCCCccc-c--eeccc---eeEeeeEEEeCeEEEEcccCCCCCCeEEecCCCCCCCCeEEEEEecCeeC
Q 028246 39 GRAPVYLNVYDLTPMNGY-V--HWAGL---GIYHSGVEVHGVEYAFGAHDYPTSGVFEVEPRLCPGFKFRKSIFIGTTCL 112 (211)
Q Consensus 39 ~~~~V~LnVYDLs~~n~~-~--~~lG~---GiyHTgVeV~G~EY~FG~~~~~~sGI~~~~P~~~pg~~~resI~lG~T~l 112 (211)
++++|+||||||+++++. + .++|. |||||||||||+||+||+ +||+.+.|+.++.++|||+|.||+|++
T Consensus 5 ~~~~V~LnVYDLs~g~a~~~s~~~lG~~i~Gi~HtgV~V~G~EY~FG~-----~GI~~~~Pg~~~~g~~resi~lG~T~~ 79 (168)
T 2wp7_A 5 NLYPVKLYVYDLSKGLARRLSPIMLGKQLEGIWHTSIVVHKDEFFFGS-----SGISSCTPGGTLLGPPDSVVDVGNTEV 79 (168)
T ss_dssp CCEEEEEEEEETTTTHHHHHHHHHTSSCCCCCEEEEEEETTEEEEEET-----TEEEEESTTCSTTCSCSEEEEEEEECC
T ss_pred CCcEEEEEEEECChHHHHHhhHHHhCCCcCcEEEEEEEECCEEEEEcC-----CCeEecCCCcCCCCCeEEEEECCCccC
Confidence 358999999999997643 2 35786 999999999999999995 699999999999999999999999999
Q ss_pred CHHHHHHHHHHhccc-CCCCCccccccccchHHHHHHHHhcCCCCChHHHhhHh------hhhHhhhhccCCC
Q 028246 113 DPIQVREFMERQSAH-YNGDTYHLIVKNCNHFCKDICYKLTGKPIPKWVNRLAK------IGTLFLLYYFPCQ 178 (211)
Q Consensus 113 t~~e~~~~l~~l~~~-f~~~tY~Ll~~NCNhFS~el~~~L~Gk~IP~~I~rla~------iG~~~~p~~~~c~ 178 (211)
++++|+++|++|+++ |++++||||+|||||||||+|++|+||+||+||||||+ +|++++||+++..
T Consensus 80 ~~~~~~~~l~~l~~~~~~g~~Y~Ll~~NCNhFs~~l~~~L~gk~IP~wInrl~~~vl~tp~G~~l~~~l~~~~ 152 (168)
T 2wp7_A 80 TEEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVAQFLTGRKIPSYITDLPSEVLSTPFGQALRPFLDSIQ 152 (168)
T ss_dssp CHHHHHHHHHHHHTTTCSGGGCBTTTBSHHHHHHHHHHHHHSCCCCHHHHTHHHHHHTSHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHhhhccCCcccCchhhhccchhHHHHHHHhcCCCCcHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 999999999999998 99999999999999999999999999999999999997 8999999988754
No 2
>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens}
Probab=93.13 E-value=0.034 Score=42.55 Aligned_cols=33 Identities=18% Similarity=0.403 Sum_probs=20.8
Q ss_pred CCHHHH-HHHHHHhcccCCCCCccccccccchHHHHH
Q 028246 112 LDPIQV-REFMERQSAHYNGDTYHLIVKNCNHFCKDI 147 (211)
Q Consensus 112 lt~~e~-~~~l~~l~~~f~~~tY~Ll~~NCNhFS~el 147 (211)
++.+++ ++....|.+++ .||||.+||=||+..+
T Consensus 87 ~~~~~iv~rA~~~lg~~~---~Y~l~~nNCEHFa~~c 120 (125)
T 2lkt_A 87 RPVEVIISSAKEMVGQKM---KYSIVSRNCEHFVTQL 120 (125)
T ss_dssp CCHHHHHHHHHHHTTCEE---CSSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCC---CcCCCccCHHHHHhhh
Confidence 444443 33333344433 6999999999998653
No 3
>4dot_A Group XVI phospholipase A2; alpha/beta fold, phospholipase/acyltransferase, phosphatidyl phosphatidylethanolamine, membrane, hydrolase; 1.96A {Homo sapiens}
Probab=93.04 E-value=0.039 Score=44.12 Aligned_cols=19 Identities=37% Similarity=0.857 Sum_probs=16.4
Q ss_pred CCccccccccchHHHHHHH
Q 028246 131 DTYHLIVKNCNHFCKDICY 149 (211)
Q Consensus 131 ~tY~Ll~~NCNhFS~el~~ 149 (211)
..|+||.+||-||+..+..
T Consensus 104 ~~Y~ll~nNCEHFvt~cr~ 122 (140)
T 4dot_A 104 VLYKLTSENCEHFVNELRY 122 (140)
T ss_dssp CSSCCCHHHHHHHHHHHHH
T ss_pred ccccccccChHHHHHHHhc
Confidence 6999999999999987543
No 4
>4dpz_X HRAS-like suppressor 2; alpha/beta fold, enzyme phospholipid acyltransferase, hydrol transferase; 1.25A {Homo sapiens} PDB: 4fa0_A 2kyt_A
Probab=92.79 E-value=0.033 Score=44.37 Aligned_cols=18 Identities=33% Similarity=0.696 Sum_probs=10.9
Q ss_pred CCccccccccchHHHHHH
Q 028246 131 DTYHLIVKNCNHFCKDIC 148 (211)
Q Consensus 131 ~tY~Ll~~NCNhFS~el~ 148 (211)
..|+||.+||.||+..+.
T Consensus 104 ~~Y~ll~nNCEHFvt~cr 121 (137)
T 4dpz_X 104 LPYSLTSDNCEHFVNHLR 121 (137)
T ss_dssp EC-----CHHHHHHHHHH
T ss_pred cccCcCccChHHHHHHHh
Confidence 489999999999998764
No 5
>1rpq_W Peptide E131; receptor-peptide complex, membrane protein; HET: NAG BMA NDG CIT; 3.00A {Homo sapiens} PDB: 1kco_A
Probab=26.63 E-value=16 Score=20.80 Aligned_cols=13 Identities=46% Similarity=1.254 Sum_probs=9.4
Q ss_pred ccchHHHHHHHHh
Q 028246 139 NCNHFCKDICYKL 151 (211)
Q Consensus 139 NCNhFS~el~~~L 151 (211)
.|.||+-|+--.|
T Consensus 2 qcphfcyeldyel 14 (26)
T 1rpq_W 2 QCPHFCYELDYEL 14 (26)
T ss_dssp CCCTHHHHSSSCC
T ss_pred CCCeeeeecCccc
Confidence 5999998765444
No 6
>1sn9_A BBAT, tetrameric beta-BETA-alpha mini-protein; protein design, domain swapping, oligomerization, de novo protein; HET: DBZ; 1.20A {Synthetic} SCOP: k.14.1.1 PDB: 1sna_A* 1sne_A* 1xof_B* 1xof_A*
Probab=24.12 E-value=45 Score=18.90 Aligned_cols=16 Identities=25% Similarity=0.551 Sum_probs=12.3
Q ss_pred CCCCCccccccccchHHHHHHHHh
Q 028246 128 YNGDTYHLIVKNCNHFCKDICYKL 151 (211)
Q Consensus 128 f~~~tY~Ll~~NCNhFS~el~~~L 151 (211)
|+-.+|| |+||+++.|
T Consensus 2 yripsyd--------fadelakll 17 (26)
T 1sn9_A 2 YRIPSYD--------FADELAKLL 17 (26)
T ss_dssp CCBTTBC--------HHHHHHHHH
T ss_pred CCCCccc--------hHHHHHHHH
Confidence 4556777 999999876
No 7
>2wj8_A Nucleoprotein; RNA binding protein RNA complex, nucleocapsid (N), ribonucleoprotein, respiratory syncytial virus (RSV); 3.29A {Human respiratory syncytial virus astrain long} PDB: 2yhm_A 2yhp_A 2yhq_A
Probab=15.95 E-value=86 Score=28.31 Aligned_cols=42 Identities=19% Similarity=0.505 Sum_probs=26.3
Q ss_pred EEecCeeCCH-----HHHHHHHHHhcccCCCCCccccc---------cccchHHHHHH
Q 028246 105 IFIGTTCLDP-----IQVREFMERQSAHYNGDTYHLIV---------KNCNHFCKDIC 148 (211)
Q Consensus 105 I~lG~T~lt~-----~e~~~~l~~l~~~f~~~tY~Ll~---------~NCNhFS~el~ 148 (211)
|-||...... .|+.+++++|..+ ..-|||.. -||+||+.-+.
T Consensus 270 imlgh~svqae~~qv~evy~~~~k~G~E--sG~~Hlr~nPKA~LLSLtncPnFaSVVL 325 (391)
T 2wj8_A 270 IMLGHASVQAEMEQVVEVYEYAQKLGGE--AGFYHILNNPKASLLSLTQFPHFSSVVL 325 (391)
T ss_dssp GGGGSHHHHHHHHHHHHHHHHHHHHGGG--GGGTTTTTCGGGGGGCSTTCHHHHHHHH
T ss_pred eeeehhHHHHHHHHHHHHHHHHHHhCcc--chhhhhhhCCcchheecccCCCchhhee
Confidence 3455554432 2567778888643 34566654 59999997654
No 8
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=15.74 E-value=46 Score=19.57 Aligned_cols=17 Identities=29% Similarity=0.515 Sum_probs=10.2
Q ss_pred cCeeCCHHHHHHHHHHh
Q 028246 108 GTTCLDPIQVREFMERQ 124 (211)
Q Consensus 108 G~T~lt~~e~~~~l~~l 124 (211)
|.|..++.+++++++.-
T Consensus 5 gvtrfdekqieelldnc 21 (31)
T 4h62_V 5 GVTRFDEKQIEELLDNC 21 (31)
T ss_dssp -----CHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHH
Confidence 67889999999998754
No 9
>3qbc_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; protein-inhibitor complex, ferredoxin-like fold; HET: B55; 1.65A {Staphylococcus aureus}
Probab=12.76 E-value=3.7e+02 Score=21.28 Aligned_cols=49 Identities=18% Similarity=0.147 Sum_probs=34.5
Q ss_pred CCeEEecCCCC-CCCCeEEEEEecCeeCCHHHHHHHHHHhc--------ccCCCCCcc
Q 028246 86 SGVFEVEPRLC-PGFKFRKSIFIGTTCLDPIQVREFMERQS--------AHYNGDTYH 134 (211)
Q Consensus 86 sGI~~~~P~~~-pg~~~resI~lG~T~lt~~e~~~~l~~l~--------~~f~~~tY~ 134 (211)
|.+++++|=.. ....|--.+....|.+++.++.+.+.++. .+|.+.+-|
T Consensus 41 S~~yeT~P~G~~~q~~FlN~v~~~~T~l~p~~LL~~l~~IE~~~GR~R~~r~gpRtlD 98 (161)
T 3qbc_A 41 SPIYETAPVGYTEQPNFLNLCVEIQTTLTVLQLLECCLKTEECLHRIRKERWGPRTLD 98 (161)
T ss_dssp CCCEEECCSSSSSSCCEEEEEEEEEECSCHHHHHHHHHHHHHHHHSCSCGGGCCCCCE
T ss_pred CCEEEECCCCCCCCCcceEEEEEEEeCCCHHHHHHHHHHHHHHhCCCCCCcCCCceEe
Confidence 46677777432 33467767778899999999888886543 467777665
No 10
>3imo_A Integron cassette protein; novel, integron protein, argentinean O139 strain, unknown function; 1.80A {Vibrio cholerae O139}
Probab=12.75 E-value=4.8e+02 Score=20.35 Aligned_cols=49 Identities=18% Similarity=0.248 Sum_probs=32.1
Q ss_pred EEEeCeEEEEcccCCCCCCeEEecCCCCCCCCeEEEEEecCeeCCHHHHHHHHHH
Q 028246 69 VEVHGVEYAFGAHDYPTSGVFEVEPRLCPGFKFRKSIFIGTTCLDPIQVREFMER 123 (211)
Q Consensus 69 VeV~G~EY~FG~~~~~~sGI~~~~P~~~pg~~~resI~lG~T~lt~~e~~~~l~~ 123 (211)
|++.|++|.|.+.- .+|-.+..-+...|.+++ .++. .-++.++..+..+
T Consensus 84 vti~gkRyaFsYNh--~t~~IElR~gs~~Ga~l~---SF~N-~T~~~~I~~~F~s 132 (133)
T 3imo_A 84 VTINGERYAFSYNH--SSEKIEMRKGNIQGNTIH---EFDN-STPLSKLVEIFKG 132 (133)
T ss_dssp EEETTEEEEEEEET--TTTEEEEEESSTTSCCSE---EECT-TSCHHHHHHHHHH
T ss_pred EEEcCEEEEEEecc--ccceEEEecCcccceEEE---EecC-CCCHHHHHHHHhc
Confidence 89999999999743 256667777777777766 2332 2345566666554
Done!