Query 028246
Match_columns 211
No_of_seqs 119 out of 460
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 13:51:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028246.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028246hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fhfa1 b.1.18.2 (A:288-402) P 32.2 20 0.0014 24.6 3.6 40 40-79 28-73 (115)
2 d1vlpa1 d.41.2.2 (A:1-149) Nic 27.2 5.5 0.0004 29.7 -0.3 41 115-155 51-92 (149)
3 d1bf2a1 b.1.18.2 (A:1-162) Iso 19.2 54 0.0039 23.5 4.1 31 40-70 27-62 (162)
4 d1wxaa1 d.15.1.5 (A:8-110) Afa 16.2 1.1E+02 0.0081 20.1 4.9 51 87-138 3-55 (103)
5 d1zgka1 b.68.11.1 (A:322-609) 15.3 58 0.0043 23.6 3.4 37 45-81 21-59 (288)
6 d1h2ca_ b.31.1.1 (A:) EV matri 12.0 12 0.00087 26.9 -1.5 44 135-183 56-99 (125)
7 d1ig8a1 c.55.1.3 (A:18-224) He 9.9 13 0.00098 28.9 -2.0 48 117-165 6-58 (207)
8 d1yira2 d.41.2.2 (A:4-144) Nic 8.7 32 0.0024 24.9 -0.2 40 116-156 54-94 (141)
9 d1f9ya_ d.58.30.1 (A:) 6-hydro 8.3 2.4E+02 0.017 20.2 4.8 39 86-124 37-76 (158)
10 d1qbaa3 c.1.8.6 (A:338-780) Ba 8.0 34 0.0025 28.3 -0.3 54 104-168 7-60 (443)
No 1
>d2fhfa1 b.1.18.2 (A:288-402) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]}
Probab=32.20 E-value=20 Score=24.63 Aligned_cols=40 Identities=18% Similarity=0.178 Sum_probs=25.8
Q ss_pred CccEEEEEeeCCCCcccce--e--ccceeEeeeEE--EeCeEEEEc
Q 028246 40 RAPVYLNVYDLTPMNGYVH--W--AGLGIYHSGVE--VHGVEYAFG 79 (211)
Q Consensus 40 ~~~V~LnVYDLs~~n~~~~--~--lG~GiyHTgVe--V~G~EY~FG 79 (211)
-..|.|.+||=........ . -..|+||.-|. -.|..|.|-
T Consensus 28 A~~V~L~l~~~~~~~~~~~~~~~~~~~GvW~~~i~~~~~G~~Y~y~ 73 (115)
T d2fhfa1 28 AQQVELVIYSADKKVIASHPMTRDSASGAWSWQGGSDLKGAFYRYA 73 (115)
T ss_dssp CSEEEEEEECTTCCEEEEEECEECTTTCEEEEEECGGGTTCEEEEE
T ss_pred CCEEEEEEECCCCCccceeeeeEcCCCCEEEEEECCCCCCCEEEEE
Confidence 3789999998654322111 1 13599999986 356677664
No 2
>d1vlpa1 d.41.2.2 (A:1-149) Nicotinate phosphoribosyltransferase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=27.24 E-value=5.5 Score=29.70 Aligned_cols=41 Identities=2% Similarity=0.012 Sum_probs=34.4
Q ss_pred HHHHHHHHHhc-ccCCCCCccccccccchHHHHHHHHhcCCC
Q 028246 115 IQVREFMERQS-AHYNGDTYHLIVKNCNHFCKDICYKLTGKP 155 (211)
Q Consensus 115 ~e~~~~l~~l~-~~f~~~tY~Ll~~NCNhFS~el~~~L~Gk~ 155 (211)
..+++.|+-|+ -+|+.+..+-|+.+|+.|.+++..+|-+-+
T Consensus 51 ~gl~~~i~~l~~lrFt~eel~yL~~~~~~~~~~fl~~L~~~r 92 (149)
T d1vlpa1 51 NWLKEQFSYLGNLRFTEEEIEYLKQEIPYLPSAYIKYISSSN 92 (149)
T ss_dssp HHHHHHHHHGGGCCCCHHHHHHHHHHCTTSCHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHcCCCCCHHHHHHHHhCC
Confidence 35677777775 699999999999999999999999997744
No 3
>d1bf2a1 b.1.18.2 (A:1-162) Isoamylase, N-terminal domain N {Pseudomonas amyloderamosa [TaxId: 32043]}
Probab=19.16 E-value=54 Score=23.54 Aligned_cols=31 Identities=19% Similarity=0.161 Sum_probs=20.1
Q ss_pred CccEEEEEeeCCCCcc-c-cee---ccceeEeeeEE
Q 028246 40 RAPVYLNVYDLTPMNG-Y-VHW---AGLGIYHSGVE 70 (211)
Q Consensus 40 ~~~V~LnVYDLs~~n~-~-~~~---lG~GiyHTgVe 70 (211)
-..|.|.+||=..... . ... -..||||.-|.
T Consensus 27 A~~V~L~ly~~~~~~~~~~~~~l~~~~~gvW~~~v~ 62 (162)
T d1bf2a1 27 ATRIVLYLYSAGYGVQESATYTLSPAGSGVWAVTVP 62 (162)
T ss_dssp CSEEEEEEESSSSSCCCSEEEECEECSTTEEEEEEE
T ss_pred CCEEEEEEEcCCCCCcceeEEEcccccccEEEEEec
Confidence 3789999998654321 1 112 23699998875
No 4
>d1wxaa1 d.15.1.5 (A:8-110) Afadin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=16.21 E-value=1.1e+02 Score=20.07 Aligned_cols=51 Identities=20% Similarity=0.319 Sum_probs=37.1
Q ss_pred CeEEecCCCC-CCCCeEEEEEecCeeCCHHHHHHHHHHhcc-cCCCCCcccccc
Q 028246 87 GVFEVEPRLC-PGFKFRKSIFIGTTCLDPIQVREFMERQSA-HYNGDTYHLIVK 138 (211)
Q Consensus 87 GI~~~~P~~~-pg~~~resI~lG~T~lt~~e~~~~l~~l~~-~f~~~tY~Ll~~ 138 (211)
|+..+-++.- ++..|+ ++.+-.+.-..+.++++|++..- .=.+..|.|..-
T Consensus 3 G~lkVy~~~l~~~~~yk-~l~vs~~tTa~eVI~~~L~k~~l~~~~~~~y~L~ev 55 (103)
T d1wxaa1 3 GTLRIYADSLKPNIPYK-TILLSTTDTADFAVAESLEKYGLEKENPKDYCIARV 55 (103)
T ss_dssp CEEEECCTTTCSSSCCE-EEECCSSCCHHHHHHHHHHHHTCSSSCTTTEEEEEE
T ss_pred cEEEEEcCccCCCCCeE-EEEECCCCcHHHHHHHHHHHhCCCCCChhhEEEEEE
Confidence 6777666553 566666 88888888888889999998763 335778887653
No 5
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.28 E-value=58 Score=23.57 Aligned_cols=37 Identities=22% Similarity=0.202 Sum_probs=24.6
Q ss_pred EEEeeCCCCc-ccceeccc-eeEeeeEEEeCeEEEEccc
Q 028246 45 LNVYDLTPMN-GYVHWAGL-GIYHSGVEVHGVEYAFGAH 81 (211)
Q Consensus 45 LnVYDLs~~n-~~~~~lG~-GiyHTgVeV~G~EY~FG~~ 81 (211)
+++||+.... ..+..+-. -..|+.+.+.++-|.|||.
T Consensus 21 ~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~ 59 (288)
T d1zgka1 21 LEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGR 59 (288)
T ss_dssp EEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCE
T ss_pred EEEEECCCCeEEECCCCCCccceeEEEEECCEEEEEeCc
Confidence 7899998742 11111222 3468888899999999984
No 6
>d1h2ca_ b.31.1.1 (A:) EV matrix protein {Ebola virus [TaxId: 205488]}
Probab=12.04 E-value=12 Score=26.90 Aligned_cols=44 Identities=20% Similarity=0.135 Sum_probs=30.5
Q ss_pred ccccccchHHHHHHHHhcCCCCChHHHhhHhhhhHhhhhccCCCCCCcc
Q 028246 135 LIVKNCNHFCKDICYKLTGKPIPKWVNRLAKIGTLFLLYYFPCQGSCQF 183 (211)
Q Consensus 135 Ll~~NCNhFS~el~~~L~Gk~IP~~I~rla~iG~~~~p~~~~c~lp~~~ 183 (211)
++.||-|-|-. .. =+|.+||++=.|+-++|... |+|..++|..+
T Consensus 56 ~f~~~~~~~vr--vn-rlg~gip~hplr~lr~gnqa--f~q~~v~p~~~ 99 (125)
T d1h2ca_ 56 HFGKATNPLVR--VN-RLGPGIPDHPLRLLRIGNQA--FLQEFVLPPVQ 99 (125)
T ss_dssp EESCTTSCEEE--EE-ESSCCCTTCSSHHHHTSEEE--EEHHHHSCSCC
T ss_pred EeecCCCeeEE--Ee-ccCCCCCcchHHHHHHhhHH--HHHhcccCCcc
Confidence 55666665532 11 14889999999999999765 67777777654
No 7
>d1ig8a1 c.55.1.3 (A:18-224) Hexokinase {Baker's yeast (Saccharomyces cerevisiae), pII [TaxId: 4932]}
Probab=9.93 E-value=13 Score=28.90 Aligned_cols=48 Identities=19% Similarity=0.304 Sum_probs=34.5
Q ss_pred HHHHHHHhcccCCCCCccccccccchHHHHHHHHhcC-----CCCChHHHhhHh
Q 028246 117 VREFMERQSAHYNGDTYHLIVKNCNHFCKDICYKLTG-----KPIPKWVNRLAK 165 (211)
Q Consensus 117 ~~~~l~~l~~~f~~~tY~Ll~~NCNhFS~el~~~L~G-----k~IP~~I~rla~ 165 (211)
+.+-++++.+.|.-+. +.|..--++|.+++.+-|.+ +.+|.||..+|.
T Consensus 6 ~~~~~~~~~~~f~~~~-~~L~~i~~~f~~em~~GL~~~~~~~~MlPt~v~~lPt 58 (207)
T d1ig8a1 6 LMQQIENFEKIFTVPT-ETLQAVTKHFISELEKGLSKKGGNIPMIPGWVMDFPT 58 (207)
T ss_dssp HHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHSTTCCSSCCEECCCCSCCC
T ss_pred HHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHccCCCCCcceeeccCCCCC
Confidence 3344566666665433 67888888999999999965 368888888773
No 8
>d1yira2 d.41.2.2 (A:4-144) Nicotinate phosphoribosyltransferase, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=8.67 E-value=32 Score=24.93 Aligned_cols=40 Identities=13% Similarity=0.091 Sum_probs=31.3
Q ss_pred HHHHHHHHhc-ccCCCCCccccccccchHHHHHHHHhcCCCC
Q 028246 116 QVREFMERQS-AHYNGDTYHLIVKNCNHFCKDICYKLTGKPI 156 (211)
Q Consensus 116 e~~~~l~~l~-~~f~~~tY~Ll~~NCNhFS~el~~~L~Gk~I 156 (211)
.+++.|+.|+ -+|+.+.-+.|+ +|+.|.+++..+|-+-++
T Consensus 54 gl~~~i~~l~~lrFt~eei~yL~-~~~~f~~~fldyL~~frf 94 (141)
T d1yira2 54 AIREQLEYLAGLAISDEQLAFLE-RIPFLAPDFIRFLGLFRF 94 (141)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHH-TSTTSCHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHH-cCCCCCHHHHHHHHhCCC
Confidence 4566666664 589999999885 599999999999987555
No 9
>d1f9ya_ d.58.30.1 (A:) 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK {Escherichia coli [TaxId: 562]}
Probab=8.28 E-value=2.4e+02 Score=20.18 Aligned_cols=39 Identities=15% Similarity=0.157 Sum_probs=28.4
Q ss_pred CCeEEecCCCCCC-CCeEEEEEecCeeCCHHHHHHHHHHh
Q 028246 86 SGVFEVEPRLCPG-FKFRKSIFIGTTCLDPIQVREFMERQ 124 (211)
Q Consensus 86 sGI~~~~P~~~pg-~~~resI~lG~T~lt~~e~~~~l~~l 124 (211)
|-++.++|-.... ..|--.+.+.+|.+++.++.+.+..+
T Consensus 37 S~~y~T~p~g~~~qp~F~N~v~~~~T~l~p~~ll~~l~~I 76 (158)
T d1f9ya_ 37 SSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRI 76 (158)
T ss_dssp CCCEEECCSSCSSSCCEEEEEEEEEECSCHHHHHHHHHHH
T ss_pred ecceecccccccccchHhhhhhhhhhccCHHHHHHHHHHH
Confidence 4667777654333 35777888899999999988877654
No 10
>d1qbaa3 c.1.8.6 (A:338-780) Bacterial chitobiase (beta-N-acetylhexosaminidase) {Serratia marcescens [TaxId: 615]}
Probab=7.98 E-value=34 Score=28.27 Aligned_cols=54 Identities=15% Similarity=0.369 Sum_probs=40.3
Q ss_pred EEEecCeeCCHHHHHHHHHHhcccCCCCCccccccccchHHHHHHHHhcCCCCChHHHhhHhhhh
Q 028246 104 SIFIGTTCLDPIQVREFMERQSAHYNGDTYHLIVKNCNHFCKDICYKLTGKPIPKWVNRLAKIGT 168 (211)
Q Consensus 104 sI~lG~T~lt~~e~~~~l~~l~~~f~~~tY~Ll~~NCNhFS~el~~~L~Gk~IP~~I~rla~iG~ 168 (211)
.++.|+..++.+.+.++|+.|+ .+.-+..|| |+||+-.-+|--+..|. |+.+|+
T Consensus 7 mlD~aR~f~~~~~ik~~id~ma-~~KlN~lH~------HltD~qg~rle~~~~P~----Lt~~ga 60 (443)
T d1qbaa3 7 FLDVARNFHKKDAVLRLLDQMA-AYKLNKFHF------HLSDDEGWRIEIPGLPE----LTEVGG 60 (443)
T ss_dssp EEECSSSCCCHHHHHHHHHHHH-HTTCCEEEE------ECBCSSCBCBCCTTCTH----HHHTTT
T ss_pred EEEcCCCCcCHHHHHHHHHHHH-HcCCcEEEE------EEecCCCceeeeCCcch----hhhhcc
Confidence 4788999999999999999984 555566665 77777666666666775 555555
Done!