BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028248
(211 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8H112|PGL1A_ARATH PGR5-like protein 1A, chloroplastic OS=Arabidopsis thaliana
GN=PGRL1A PE=1 SV=1
Length = 324
Score = 377 bits (968), Expect = e-104, Method: Compositional matrix adjust.
Identities = 177/211 (83%), Positives = 199/211 (94%)
Query: 1 MSNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIMSDEEYDKLKQKLKMEG 60
MSNEEFDNLKEELMWEGSSVVMLSS EQ+FLEASMAYV+G PI++DEEYDKLK KLK++G
Sbjct: 114 MSNEEFDNLKEELMWEGSSVVMLSSDEQRFLEASMAYVSGNPILNDEEYDKLKLKLKIDG 173
Query: 61 SEIVVEGPRCSLRSRKVYSDLSVDYLKMLLLNVPATVVALGLFFFLDDITGFEITYLLEL 120
S+IV EGPRCSLRS+KVYSDL+VDY KMLLLNVPATVVALGLFFFLDDITGFEITY++EL
Sbjct: 174 SDIVSEGPRCSLRSKKVYSDLAVDYFKMLLLNVPATVVALGLFFFLDDITGFEITYIMEL 233
Query: 121 PEPFSFIFTWFAAVPLIVYLSQSLTKLIVRESLILKGPCPNCGTENVSFFGTILSISSGG 180
PEP+SFIFTWFAAVP+IVYL+ S+TKLI+++ LILKGPCPNCGTEN SFFGTILSISSGG
Sbjct: 234 PEPYSFIFTWFAAVPVIVYLALSITKLIIKDFLILKGPCPNCGTENTSFFGTILSISSGG 293
Query: 181 TTNTINCSNCGTTMVYDSNTRLITLPEGSEA 211
TNT+ C+NCGT MVYDS +RLITLPEGS+A
Sbjct: 294 KTNTVKCTNCGTAMVYDSGSRLITLPEGSQA 324
>sp|Q8GYC7|PGL1B_ARATH PGR5-like protein 1B, chloroplastic OS=Arabidopsis thaliana
GN=PGRL1B PE=1 SV=1
Length = 313
Score = 369 bits (947), Expect = e-102, Method: Compositional matrix adjust.
Identities = 177/211 (83%), Positives = 192/211 (90%)
Query: 1 MSNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIMSDEEYDKLKQKLKMEG 60
MSNEEFDNLKEELMWEGSSVVMLSS EQ+FLEASMAYV+G PI+SDEEYDKLK KLKM+G
Sbjct: 103 MSNEEFDNLKEELMWEGSSVVMLSSDEQRFLEASMAYVSGNPILSDEEYDKLKMKLKMDG 162
Query: 61 SEIVVEGPRCSLRSRKVYSDLSVDYLKMLLLNVPATVVALGLFFFLDDITGFEITYLLEL 120
SEIV EGPRCSLRS+KVYSDL++DY KM LLNVPATVVALGLFFFLDDITGFEITYLLEL
Sbjct: 163 SEIVCEGPRCSLRSKKVYSDLAIDYFKMFLLNVPATVVALGLFFFLDDITGFEITYLLEL 222
Query: 121 PEPFSFIFTWFAAVPLIVYLSQSLTKLIVRESLILKGPCPNCGTENVSFFGTILSISSGG 180
PEPFSFIFTWFAAVP IVYL+ SLTKLI+++ LILKGPCPNCGTENVSFFGTILSI +
Sbjct: 223 PEPFSFIFTWFAAVPAIVYLALSLTKLILKDFLILKGPCPNCGTENVSFFGTILSIPNDS 282
Query: 181 TTNTINCSNCGTTMVYDSNTRLITLPEGSEA 211
TN + CS CGT MVYDS +RLITLPEG +A
Sbjct: 283 NTNNVKCSGCGTEMVYDSGSRLITLPEGGKA 313
>sp|A6LA55|DNLJ_PARD8 DNA ligase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM
20701 / NCTC 11152) GN=ligA PE=3 SV=1
Length = 664
Score = 34.7 bits (78), Expect = 0.49, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 37 YVAGKPIMSDEEYDKLKQKLK-MEGSEIVVEGPRCSLRSRKVYSDLSVDYLKMLLLNVPA 95
YV P +SD E+DK+ ++L+ +E + P +R+V SDLS ++ + ++ P
Sbjct: 21 YVLSAPTISDFEFDKMMKELQELEAAHPEFADPDSP--TRRVGSDLSKEF-EQVVHKYP- 76
Query: 96 TVVALGLFFFLDDITGFEITYLLELPEPFSFI 127
+++LG + D+I F + L EPF +
Sbjct: 77 -MLSLGNTYSEDEIRDFYDRTVRSLNEPFEIV 107
>sp|P24200|MCRA_ECOLI 5-methylcytosine-specific restriction enzyme A OS=Escherichia coli
(strain K12) GN=mcrA PE=4 SV=2
Length = 277
Score = 33.9 bits (76), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 22/81 (27%)
Query: 142 QSLTKLIVRESLIL-------KGPCPNCGTENVSFF----------GTILSISSGGTTNT 184
+ L K+ VR+ ++ KG C NCG +N F+ ++ +SSGG T
Sbjct: 183 ERLQKVYVRDPMVKAWILQQSKGICENCG-KNAPFYLNDGNPYLEVHHVIPLSSGGADTT 241
Query: 185 IN----CSNCGTTMVYDSNTR 201
N C NC + Y N +
Sbjct: 242 DNCVALCPNCHRELHYSKNAK 262
>sp|A1AVV5|DNLJ_RUTMC DNA ligase OS=Ruthia magnifica subsp. Calyptogena magnifica
GN=ligA PE=3 SV=1
Length = 614
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 17/18 (94%)
Query: 33 ASMAYVAGKPIMSDEEYD 50
A++AY AGKPI+SD++YD
Sbjct: 16 ANLAYRAGKPIISDQDYD 33
>sp|A8F541|DNLJ_THELT DNA ligase OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM
14385 / TMO) GN=ligA PE=3 SV=1
Length = 678
Score = 32.3 bits (72), Expect = 2.1, Method: Composition-based stats.
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 37 YVAGKPIMSDEEYDKLKQKL 56
YV PI+SDEEYD+L Q+L
Sbjct: 26 YVLADPIISDEEYDRLMQEL 45
>sp|A7HJG6|DNLJ_FERNB DNA ligase OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM
5306 / Rt17-B1) GN=ligA PE=3 SV=1
Length = 681
Score = 32.3 bits (72), Expect = 2.2, Method: Composition-based stats.
Identities = 15/26 (57%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Query: 37 YVAGKPIMSDEEYDKLKQKLKMEGSE 62
YV +P++SDEEYDKL ++L ME E
Sbjct: 25 YVLAQPVISDEEYDKLMKRL-MELEE 49
>sp|Q97Z80|RS27_SULSO 30S ribosomal protein S27e OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=rps27e PE=3 SV=1
Length = 66
Score = 32.3 bits (72), Expect = 2.5, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 9/46 (19%)
Query: 151 ESLILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVY 196
+S L+ CPNCG E F T + C +CGT +VY
Sbjct: 13 KSRFLRVKCPNCGNEQTIF---------SHATFPVRCLSCGTELVY 49
>sp|Q5GS88|DNLJ_WOLTR DNA ligase OS=Wolbachia sp. subsp. Brugia malayi (strain TRS)
GN=ligA PE=3 SV=1
Length = 683
Score = 32.0 bits (71), Expect = 3.2, Method: Composition-based stats.
Identities = 15/21 (71%), Positives = 18/21 (85%), Gaps = 1/21 (4%)
Query: 41 KPIMSDEEYDKLKQKL-KMEG 60
KP ++D EYDKLKQKL +MEG
Sbjct: 30 KPEIADAEYDKLKQKLVEMEG 50
>sp|Q973F9|RS27_SULTO 30S ribosomal protein S27e OS=Sulfolobus tokodaii (strain DSM 16993
/ JCM 10545 / NBRC 100140 / 7) GN=rps27e PE=3 SV=1
Length = 66
Score = 32.0 bits (71), Expect = 3.5, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 9/46 (19%)
Query: 151 ESLILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVY 196
+S ++ CPNCG E F T + C +CGT +VY
Sbjct: 13 KSKFIRIKCPNCGNEQTVF---------SHATFPVRCLSCGTQLVY 49
>sp|A6LN55|DNLJ_THEM4 DNA ligase OS=Thermosipho melanesiensis (strain BI429 / DSM
12029) GN=ligA PE=3 SV=1
Length = 662
Score = 31.6 bits (70), Expect = 3.9, Method: Composition-based stats.
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 37 YVAGKPIMSDEEYDKLKQKL 56
YV PI+SDEEYD+L +KL
Sbjct: 23 YVLADPIISDEEYDRLLKKL 42
>sp|P32529|RPA12_YEAST DNA-directed RNA polymerase I subunit RPA12 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPA12 PE=1
SV=1
Length = 125
Score = 31.2 bits (69), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 143 SLTKLIVRESLILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCG 191
SL K +++ +K CP CG E +++ L + G T C++CG
Sbjct: 70 SLKKNELKDGATIKEKCPQCGNEEMNYHTLQLRSADEGATVFYTCTSCG 118
>sp|B7IDX6|DNLJ_THEAB DNA ligase OS=Thermosipho africanus (strain TCF52B) GN=ligA PE=3
SV=1
Length = 665
Score = 30.8 bits (68), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 37 YVAGKPIMSDEEYDKLKQKL 56
YV P++SDEEYDKL +KL
Sbjct: 25 YVLADPVISDEEYDKLLKKL 44
>sp|Q6NUT3|MFS12_HUMAN Major facilitator superfamily domain-containing protein 12 OS=Homo
sapiens GN=MFSD12 PE=2 SV=2
Length = 480
Score = 30.8 bits (68), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 13/63 (20%)
Query: 114 ITYLLELPEPFSFIFTWFAAVPLIVYLSQSLTKLIVRESLILKGPCPNCGTENVSFFGTI 173
+TY L LP+ F A +PL++YLS L+ +++ P C N+++F +
Sbjct: 302 LTYSLHLPKKF------IATIPLVMYLSGFLSSFLMK-------PINKCIGRNMTYFSGL 348
Query: 174 LSI 176
L I
Sbjct: 349 LVI 351
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,179,520
Number of Sequences: 539616
Number of extensions: 2820090
Number of successful extensions: 9165
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 9148
Number of HSP's gapped (non-prelim): 25
length of query: 211
length of database: 191,569,459
effective HSP length: 112
effective length of query: 99
effective length of database: 131,132,467
effective search space: 12982114233
effective search space used: 12982114233
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)