Query 028248
Match_columns 211
No_of_seqs 72 out of 74
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 13:54:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028248.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028248hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4esj_A Type-2 restriction enzy 96.7 0.0011 3.7E-08 58.4 4.3 50 140-200 22-72 (257)
2 1qxf_A GR2, 30S ribosomal prot 95.8 0.0088 3E-07 43.1 3.9 43 155-206 6-48 (66)
3 1b04_A Protein (DNA ligase); D 95.8 0.0084 2.9E-07 54.0 4.7 25 34-58 21-46 (318)
4 3j20_W 30S ribosomal protein S 95.5 0.016 5.5E-07 41.4 4.3 43 155-206 14-56 (63)
5 2xzm_6 RPS27E; ribosome, trans 94.5 0.051 1.7E-06 40.5 4.9 42 155-205 31-72 (81)
6 3jsl_A DNA ligase; NAD+-depend 94.5 0.03 1E-06 50.5 4.3 25 34-58 19-44 (318)
7 3uq8_A DNA ligase; adenylated 94.5 0.031 1E-06 50.5 4.3 26 33-58 16-42 (322)
8 4glw_A DNA ligase; inhibitor, 94.4 0.0069 2.4E-07 54.0 -0.1 25 34-58 16-41 (305)
9 3u5c_b RP61, YS20, 40S ribosom 94.3 0.041 1.4E-06 41.1 3.9 44 154-206 32-75 (82)
10 2owo_A DNA ligase; protein-DNA 94.0 0.043 1.5E-06 53.9 4.5 25 34-58 19-44 (671)
11 1ta8_A DNA ligase, NAD-depende 93.9 0.036 1.2E-06 50.2 3.6 25 35-59 27-52 (332)
12 1zau_A DNA ligase; AMP; HET: D 93.9 0.045 1.6E-06 49.4 4.3 25 35-59 29-54 (328)
13 1nui_A DNA primase/helicase; z 93.2 0.04 1.4E-06 46.4 2.5 33 154-196 12-45 (255)
14 4glx_A DNA ligase; inhibitor, 93.1 0.055 1.9E-06 52.3 3.6 25 34-58 19-44 (586)
15 1dgs_A DNA ligase; AMP complex 93.0 0.053 1.8E-06 53.2 3.3 27 34-60 21-48 (667)
16 3iz6_X 40S ribosomal protein S 92.3 0.057 1.9E-06 40.7 1.9 44 154-206 34-77 (86)
17 1pft_A TFIIB, PFTFIIBN; N-term 91.7 0.086 3E-06 34.5 2.1 29 158-195 7-35 (50)
18 1qyp_A RNA polymerase II; tran 90.8 0.14 4.9E-06 34.4 2.6 38 156-194 15-53 (57)
19 3j20_Y 30S ribosomal protein S 90.5 0.15 5.2E-06 34.3 2.4 29 155-193 18-46 (50)
20 1twf_L ABC10-alpha, DNA-direct 89.6 0.13 4.6E-06 36.9 1.7 40 154-204 26-66 (70)
21 1dl6_A Transcription factor II 89.6 0.2 6.8E-06 34.4 2.5 29 158-195 13-41 (58)
22 3flo_B DNA polymerase alpha ca 88.7 0.14 4.8E-06 43.5 1.5 52 141-194 6-59 (206)
23 1lko_A Rubrerythrin all-iron(I 87.9 0.16 5.4E-06 41.9 1.2 26 156-193 155-180 (191)
24 3sgi_A DNA ligase; HET: DNA AM 86.9 0.085 2.9E-06 51.4 -1.1 24 35-58 29-53 (615)
25 1vq8_Z 50S ribosomal protein L 85.9 0.34 1.2E-05 35.8 2.0 30 156-195 27-56 (83)
26 1x3z_A Peptide: N-glycanase; h 85.8 0.53 1.8E-05 42.9 3.5 59 140-198 101-169 (335)
27 1gh9_A 8.3 kDa protein (gene M 84.0 0.48 1.6E-05 34.1 2.0 29 158-198 6-34 (71)
28 3v2d_5 50S ribosomal protein L 83.4 0.52 1.8E-05 32.9 1.9 20 157-191 31-50 (60)
29 2kdx_A HYPA, hydrogenase/ureas 83.3 0.62 2.1E-05 35.4 2.5 35 152-198 69-105 (119)
30 3pwf_A Rubrerythrin; non heme 83.2 0.52 1.8E-05 38.4 2.1 25 156-193 138-162 (170)
31 3h0g_L DNA-directed RNA polyme 82.9 0.48 1.6E-05 33.5 1.6 33 155-198 20-52 (63)
32 2lcq_A Putative toxin VAPC6; P 82.8 0.53 1.8E-05 37.3 2.0 31 153-195 129-159 (165)
33 3m7n_A Putative uncharacterize 81.4 0.93 3.2E-05 36.9 3.0 32 150-193 134-165 (179)
34 2qkd_A Zinc finger protein ZPR 80.5 0.45 1.5E-05 44.2 0.9 31 155-192 11-49 (404)
35 1wii_A Hypothetical UPF0222 pr 80.3 1.1 3.9E-05 33.2 2.9 36 157-196 24-59 (85)
36 2k1p_A Zinc finger RAN-binding 78.7 0.81 2.8E-05 28.1 1.4 22 158-193 8-29 (33)
37 3a43_A HYPD, hydrogenase nicke 78.6 0.69 2.4E-05 36.5 1.3 42 152-195 66-118 (139)
38 2lk0_A RNA-binding protein 5; 78.5 0.83 2.9E-05 27.8 1.4 22 158-193 7-28 (32)
39 2k4x_A 30S ribosomal protein S 78.3 1.3 4.6E-05 30.1 2.5 30 155-194 17-46 (55)
40 1pft_A TFIIB, PFTFIIBN; N-term 78.1 1.5 5.1E-05 28.5 2.6 19 182-200 3-22 (50)
41 2qkd_A Zinc finger protein ZPR 77.9 1 3.4E-05 41.9 2.3 37 150-193 214-258 (404)
42 3o9x_A Uncharacterized HTH-typ 77.8 0.91 3.1E-05 33.9 1.7 35 158-195 4-47 (133)
43 3k7a_M Transcription initiatio 77.8 0.85 2.9E-05 40.5 1.8 40 148-195 14-53 (345)
44 1yuz_A Nigerythrin; rubrythrin 77.0 0.92 3.2E-05 37.8 1.7 26 155-193 170-195 (202)
45 1tfi_A Transcriptional elongat 76.4 1.9 6.5E-05 28.7 2.8 38 156-195 9-48 (50)
46 2f4m_A Peptide N-glycanase; gl 76.0 2.8 9.5E-05 37.4 4.6 59 140-199 63-129 (295)
47 1vk6_A NADH pyrophosphatase; 1 74.9 3.7 0.00013 35.2 5.0 40 139-193 95-134 (269)
48 1l8d_A DNA double-strand break 74.8 0.73 2.5E-05 34.2 0.4 12 156-167 47-58 (112)
49 3ir9_A Peptide chain release f 74.4 1.4 4.8E-05 35.7 2.1 41 157-200 79-119 (166)
50 1d0q_A DNA primase; zinc-bindi 74.1 1.3 4.5E-05 32.8 1.7 31 155-192 36-66 (103)
51 3u6p_A Formamidopyrimidine-DNA 73.3 1.4 4.8E-05 38.3 1.9 35 149-191 234-272 (273)
52 2xzf_A Formamidopyrimidine-DNA 73.2 1.5 5.2E-05 37.9 2.1 35 150-192 232-270 (271)
53 1ee8_A MUTM (FPG) protein; bet 71.8 1.9 6.6E-05 37.2 2.5 34 151-192 226-263 (266)
54 1k82_A Formamidopyrimidine-DNA 71.7 1.7 5.9E-05 37.5 2.1 33 151-191 231-267 (268)
55 3u5c_f 40S ribosomal protein S 71.5 2.5 8.7E-05 33.7 2.9 35 153-198 115-152 (152)
56 2k5c_A Uncharacterized protein 71.3 1.1 3.7E-05 33.9 0.6 10 158-167 53-62 (95)
57 2akl_A PHNA-like protein PA012 70.9 2.1 7.3E-05 34.5 2.3 27 157-194 28-54 (138)
58 3f2b_A DNA-directed DNA polyme 70.6 1.9 6.7E-05 44.3 2.5 37 159-198 505-541 (1041)
59 1k3x_A Endonuclease VIII; hydr 69.7 2 7E-05 36.9 2.1 26 158-191 236-261 (262)
60 4bbr_M Transcription initiatio 68.6 2.6 9E-05 37.6 2.7 38 148-195 14-53 (345)
61 3ga8_A HTH-type transcriptiona 68.0 2.1 7.3E-05 30.1 1.6 13 183-195 35-47 (78)
62 3p2a_A Thioredoxin 2, putative 68.0 2.5 8.4E-05 31.2 2.0 31 156-194 5-35 (148)
63 2au3_A DNA primase; zinc ribbo 67.2 2.6 8.8E-05 38.0 2.3 31 155-192 33-63 (407)
64 6rxn_A Rubredoxin; electron tr 66.7 2.7 9.2E-05 27.8 1.8 35 157-193 5-39 (46)
65 1k81_A EIF-2-beta, probable tr 64.8 2.6 8.9E-05 26.3 1.3 33 158-197 2-34 (36)
66 2apo_B Ribosome biogenesis pro 64.6 2.1 7.2E-05 30.0 0.9 9 186-194 20-28 (60)
67 2xzm_9 RPS31E; ribosome, trans 64.0 2.6 9E-05 35.2 1.6 34 154-198 111-145 (189)
68 2zjr_Z 50S ribosomal protein L 62.4 2.6 8.8E-05 29.2 1.1 8 158-165 32-39 (60)
69 3j21_g 50S ribosomal protein L 62.0 2.1 7.2E-05 29.0 0.5 31 156-201 14-44 (51)
70 3h0g_I DNA-directed RNA polyme 61.4 5.9 0.0002 30.0 3.1 36 156-193 72-109 (113)
71 3w0f_A Endonuclease 8-like 3; 61.1 5.4 0.00019 35.3 3.2 29 158-192 253-281 (287)
72 3k1f_M Transcription initiatio 61.1 3.1 0.00011 35.3 1.6 41 147-195 13-53 (197)
73 2k5c_A Uncharacterized protein 60.9 3 0.0001 31.4 1.3 17 182-198 6-22 (95)
74 3c1l_A Putative antioxidant de 60.2 11 0.00038 29.6 4.6 48 2-54 100-147 (188)
75 2aus_D NOP10, ribosome biogene 59.5 3.2 0.00011 29.1 1.2 10 187-196 20-29 (60)
76 2kn9_A Rubredoxin; metalloprot 58.7 4.2 0.00014 29.9 1.7 38 156-193 27-69 (81)
77 2ct7_A Ring finger protein 31; 58.7 6.5 0.00022 28.1 2.7 28 159-196 28-55 (86)
78 2fiy_A Protein FDHE homolog; F 58.3 6.6 0.00023 34.9 3.3 14 154-167 180-193 (309)
79 1yk4_A Rubredoxin, RD; electro 58.3 5.3 0.00018 26.8 2.0 37 157-193 3-44 (52)
80 3po3_S Transcription elongatio 58.1 6.2 0.00021 32.3 2.9 36 158-195 139-176 (178)
81 2v3b_B Rubredoxin 2, rubredoxi 57.9 4.7 0.00016 27.4 1.8 38 156-193 3-45 (55)
82 1vq8_Z 50S ribosomal protein L 56.7 5 0.00017 29.4 1.9 21 182-202 25-45 (83)
83 1s24_A Rubredoxin 2; electron 56.0 4.4 0.00015 30.2 1.5 39 155-193 34-77 (87)
84 1twf_I B12.6, DNA-directed RNA 55.3 7.5 0.00026 29.8 2.7 38 156-195 72-111 (122)
85 1dx8_A Rubredoxin; electron tr 55.2 5.3 0.00018 28.4 1.7 38 156-193 7-49 (70)
86 1ltl_A DNA replication initiat 55.1 7.5 0.00026 33.3 3.0 30 158-193 136-165 (279)
87 1n0z_A ZNF265; zinc finger, RN 54.9 5.5 0.00019 26.0 1.6 22 158-193 16-39 (45)
88 1e8j_A Rubredoxin; iron-sulfur 54.4 7.4 0.00025 26.1 2.3 38 156-193 3-45 (52)
89 2gmg_A Hypothetical protein PF 53.6 7.2 0.00025 30.1 2.4 43 139-193 51-93 (105)
90 3h0g_I DNA-directed RNA polyme 53.5 8.9 0.0003 29.0 2.9 35 158-198 6-40 (113)
91 3cw2_K Translation initiation 52.8 6.6 0.00023 31.3 2.1 33 157-196 104-136 (139)
92 3lpe_B DNA-directed RNA polyme 52.7 6.1 0.00021 27.4 1.6 20 158-177 15-34 (59)
93 2avu_E Flagellar transcription 52.7 6.2 0.00021 33.3 2.0 36 149-193 128-163 (192)
94 2e9h_A EIF-5, eukaryotic trans 51.9 5.3 0.00018 32.6 1.5 40 158-202 105-144 (157)
95 2pfx_A Uncharacterized peroxid 51.7 15 0.00052 29.0 4.1 48 2-54 103-150 (191)
96 2oyo_A Uncharacterized peroxid 49.6 20 0.00068 28.4 4.5 49 2-55 108-156 (196)
97 2l6l_A DNAJ homolog subfamily 49.4 7.1 0.00024 30.4 1.8 42 149-197 105-146 (155)
98 1vd4_A Transcription initiatio 49.3 5 0.00017 25.8 0.7 40 158-200 16-55 (62)
99 1pqv_S STP-alpha, transcriptio 49.2 9.6 0.00033 33.6 2.8 38 157-196 269-308 (309)
100 2d74_B Translation initiation 49.0 7.1 0.00024 31.5 1.8 35 158-199 106-140 (148)
101 1nee_A EIF-2-beta, probable tr 47.6 5.2 0.00018 31.9 0.7 30 158-194 104-133 (138)
102 3na7_A HP0958; flagellar bioge 47.5 6.8 0.00023 33.1 1.5 40 155-199 197-237 (256)
103 2hf1_A Tetraacyldisaccharide-1 47.2 17 0.00059 25.5 3.4 32 158-199 10-41 (68)
104 2js4_A UPF0434 protein BB2007; 47.1 17 0.00059 25.7 3.3 32 158-199 10-41 (70)
105 3h99_A Methionyl-tRNA syntheta 45.3 7.3 0.00025 36.2 1.5 11 155-165 154-164 (560)
106 2jr6_A UPF0434 protein NMA0874 44.9 20 0.00067 25.2 3.3 32 158-199 10-41 (68)
107 2pk7_A Uncharacterized protein 44.8 20 0.00067 25.3 3.3 32 158-199 10-41 (69)
108 2adr_A ADR1; transcription reg 44.5 9.9 0.00034 23.3 1.6 38 158-195 4-41 (60)
109 2g2k_A EIF-5, eukaryotic trans 44.0 5.3 0.00018 33.1 0.3 40 158-202 98-137 (170)
110 2prr_A Alkylhydroperoxidase AH 43.9 17 0.0006 28.8 3.3 48 2-54 104-151 (197)
111 1bbo_A Human enhancer-binding 43.4 7.3 0.00025 23.6 0.8 38 158-195 3-40 (57)
112 3u50_C Telomerase-associated p 42.5 12 0.00041 30.6 2.2 33 149-193 35-68 (172)
113 1dxg_A Desulforedoxin; non-hem 42.5 9 0.00031 23.6 1.1 12 158-169 8-19 (36)
114 4ap4_A E3 ubiquitin ligase RNF 41.9 15 0.00052 26.4 2.5 35 157-195 49-83 (133)
115 2fiy_A Protein FDHE homolog; F 41.5 15 0.0005 32.7 2.7 10 186-195 255-264 (309)
116 1wig_A KIAA1808 protein; LIM d 40.0 17 0.0006 24.5 2.4 35 157-195 6-42 (73)
117 2jvx_A NF-kappa-B essential mo 39.8 14 0.00048 22.1 1.6 12 183-194 2-13 (28)
118 4ayb_P DNA-directed RNA polyme 39.2 9.9 0.00034 25.6 1.0 13 158-170 25-37 (48)
119 2f9i_B Acetyl-coenzyme A carbo 39.1 3.6 0.00012 36.0 -1.6 38 156-202 30-67 (285)
120 2jny_A Uncharacterized BCR; st 38.9 28 0.00096 24.4 3.4 32 158-199 12-43 (67)
121 3lns_A Benzaldehyde dehydrogen 38.8 39 0.0013 30.6 5.2 66 2-67 247-331 (457)
122 1ryq_A DNA-directed RNA polyme 38.5 11 0.00037 27.1 1.1 12 155-166 22-33 (69)
123 1zso_A Hypothetical protein; s 38.4 12 0.0004 30.6 1.5 44 154-197 35-83 (164)
124 3nw0_A Non-structural maintena 38.3 8.4 0.00029 32.7 0.6 17 182-198 215-231 (238)
125 2kv1_A Methionine-R-sulfoxide 38.1 16 0.00054 28.9 2.2 39 158-196 22-82 (124)
126 2imp_A Lactaldehyde dehydrogen 37.8 92 0.0031 28.3 7.6 67 2-68 262-356 (479)
127 1dvp_A HRS, hepatocyte growth 37.3 17 0.00058 29.9 2.4 26 157-194 162-187 (220)
128 2o4d_A Hypothetical protein PA 36.9 24 0.0008 27.7 3.0 49 1-54 84-133 (165)
129 3mhs_C SAGA-associated factor 36.9 19 0.00064 27.5 2.3 39 154-195 37-81 (99)
130 2cot_A Zinc finger protein 435 36.7 17 0.00056 23.6 1.8 38 158-195 20-57 (77)
131 3vhs_A ATPase wrnip1; zinc fin 36.6 15 0.00051 22.1 1.4 14 181-194 3-16 (29)
132 1rmd_A RAG1; V(D)J recombinati 36.6 6.5 0.00022 28.7 -0.3 43 156-198 58-104 (116)
133 3gzf_A Replicase polyprotein 1 36.4 76 0.0026 24.1 5.6 62 2-75 23-95 (96)
134 1byy_A Protein (sodium channel 36.4 12 0.00041 25.0 1.0 37 4-43 1-37 (53)
135 3r8s_0 50S ribosomal protein L 36.3 10 0.00035 25.8 0.7 10 157-166 28-37 (56)
136 2dmd_A Zinc finger protein 64, 35.6 16 0.00056 24.3 1.7 12 183-194 63-74 (96)
137 1vfy_A Phosphatidylinositol-3- 35.5 18 0.00063 25.0 2.0 31 147-194 7-37 (73)
138 2jne_A Hypothetical protein YF 35.1 20 0.0007 27.5 2.3 41 155-196 31-73 (101)
139 1a4s_A ALDH, betaine aldehyde 34.5 1.1E+02 0.0036 28.2 7.5 68 2-69 274-368 (503)
140 3zyq_A Hepatocyte growth facto 34.5 18 0.00063 30.1 2.1 25 158-194 166-190 (226)
141 3p8b_A DNA-directed RNA polyme 34.5 13 0.00046 27.4 1.1 11 157-167 36-46 (81)
142 1q7z_A 5-methyltetrahydrofolat 34.4 52 0.0018 31.2 5.5 105 3-114 369-483 (566)
143 2lce_A B-cell lymphoma 6 prote 33.9 10 0.00034 24.5 0.3 39 157-195 18-56 (74)
144 3ros_A NAD-dependent aldehyde 33.8 1.2E+02 0.0042 27.7 7.8 68 2-69 242-336 (484)
145 1joc_A EEA1, early endosomal a 33.8 22 0.00076 27.2 2.4 49 145-207 60-108 (125)
146 2k2d_A Ring finger and CHY zin 33.7 18 0.00063 26.0 1.7 34 155-198 36-69 (79)
147 3irb_A Uncharacterized protein 33.6 53 0.0018 25.6 4.6 31 149-193 40-70 (145)
148 4glw_A DNA ligase; inhibitor, 33.6 8.7 0.0003 33.9 -0.0 14 1-14 27-40 (305)
149 1wnd_A Putative betaine aldehy 33.6 1E+02 0.0035 28.3 7.2 67 2-68 278-372 (495)
150 1tx2_A DHPS, dihydropteroate s 33.2 67 0.0023 28.1 5.6 104 3-113 97-210 (297)
151 1x5w_A Zinc finger protein 64, 33.2 14 0.00049 23.5 1.0 38 158-195 11-48 (70)
152 3jz4_A Succinate-semialdehyde 33.1 1E+02 0.0035 28.0 7.1 66 3-68 266-358 (481)
153 3b4w_A Aldehyde dehydrogenase; 32.9 70 0.0024 29.4 6.0 67 2-68 265-358 (495)
154 2csh_A Zinc finger protein 297 32.6 20 0.00067 24.7 1.7 38 157-194 38-75 (110)
155 2pzi_A Probable serine/threoni 32.4 25 0.00085 32.8 2.9 37 156-198 34-70 (681)
156 3uk3_C Zinc finger protein 217 32.4 7.3 0.00025 23.6 -0.6 37 158-194 6-42 (57)
157 2dkt_A Ring finger and CHY zin 31.9 22 0.00074 28.6 2.1 35 156-191 71-105 (143)
158 1x4u_A Zinc finger, FYVE domai 31.5 28 0.00095 24.7 2.4 34 147-194 7-40 (84)
159 1wd2_A Ariadne-1 protein homol 31.3 27 0.00092 23.7 2.2 28 157-194 7-36 (60)
160 3ifg_A Succinate-semialdehyde 31.3 1.3E+02 0.0046 27.4 7.5 68 2-69 268-362 (484)
161 3gj8_B Nuclear pore complex pr 31.3 19 0.00065 26.2 1.5 22 158-193 67-88 (92)
162 1zfo_A LAsp-1; LIM domain, zin 31.2 17 0.00057 21.4 1.0 14 156-169 3-16 (31)
163 2gmy_A Hypothetical protein AT 30.8 37 0.0013 25.9 3.2 50 2-56 65-115 (153)
164 3g5o_A Uncharacterized protein 30.6 42 0.0014 25.0 3.4 25 28-56 69-93 (108)
165 3cc2_Z 50S ribosomal protein L 30.6 26 0.00088 27.4 2.2 31 155-195 59-89 (116)
166 1bxs_A Aldehyde dehydrogenase; 30.6 1E+02 0.0036 28.3 6.7 68 2-69 280-374 (501)
167 3t7l_A Zinc finger FYVE domain 30.6 28 0.00097 25.1 2.4 34 148-195 14-47 (90)
168 3dl0_A Adenylate kinase; phosp 30.5 21 0.00071 27.8 1.7 33 158-198 129-161 (216)
169 3sza_A Aldehyde dehydrogenase, 30.4 91 0.0031 28.4 6.2 65 2-69 237-325 (469)
170 1x6e_A Zinc finger protein 24; 30.3 12 0.00042 24.0 0.3 37 158-194 16-52 (72)
171 3ty7_A Putative aldehyde dehyd 30.0 1.3E+02 0.0044 27.3 7.1 65 3-67 260-351 (478)
172 2yw8_A RUN and FYVE domain-con 29.9 27 0.00094 24.6 2.1 34 147-194 12-45 (82)
173 2o2p_A Formyltetrahydrofolate 29.8 1.1E+02 0.0037 28.4 6.7 68 2-69 299-393 (517)
174 4f3x_A Putative aldehyde dehyd 29.7 1.2E+02 0.0039 28.0 6.8 68 2-69 280-375 (498)
175 3rh9_A Succinate-semialdehyde 29.0 1.1E+02 0.0038 28.3 6.6 67 3-69 268-361 (506)
176 3qan_A 1-pyrroline-5-carboxyla 29.0 1.4E+02 0.0047 27.9 7.3 67 2-69 298-391 (538)
177 3fb4_A Adenylate kinase; psych 28.9 22 0.00074 27.6 1.6 33 158-198 129-161 (216)
178 3ed6_A Betaine aldehyde dehydr 28.9 1.4E+02 0.0048 27.7 7.3 68 2-69 290-384 (520)
179 1x64_A Alpha-actinin-2 associa 28.8 22 0.00075 24.7 1.4 36 156-195 25-62 (89)
180 2ve5_A BADH, betaine aldehyde 28.6 1.6E+02 0.0054 26.8 7.5 67 3-69 264-357 (490)
181 2cor_A Pinch protein; LIM doma 28.6 43 0.0015 22.8 2.9 36 156-195 15-52 (79)
182 3sgi_A DNA ligase; HET: DNA AM 28.6 12 0.00041 36.4 0.0 31 156-195 415-448 (615)
183 2d4e_A 5-carboxymethyl-2-hydro 28.5 1.1E+02 0.0037 28.3 6.4 67 3-69 283-376 (515)
184 1wge_A Hypothetical protein 26 28.5 37 0.0013 24.9 2.6 39 154-198 28-66 (83)
185 3qt1_I DNA-directed RNA polyme 28.5 12 0.00041 29.4 0.0 36 156-193 92-129 (133)
186 2l3n_A DNA-binding protein RAP 28.4 21 0.00072 26.7 1.3 13 24-36 26-38 (104)
187 1z2q_A LM5-1; membrane protein 28.4 30 0.001 24.6 2.1 34 147-194 14-47 (84)
188 3uq8_A DNA ligase; adenylated 28.4 20 0.00069 32.1 1.4 14 1-14 28-41 (322)
189 2d8x_A Protein pinch; LIM doma 28.2 22 0.00074 23.4 1.3 35 157-195 6-42 (70)
190 3vc8_A RNA-directed RNA polyme 27.9 1.3E+02 0.0043 22.8 5.5 62 2-74 18-90 (94)
191 2jr7_A DPH3 homolog; DESR1, CS 27.7 31 0.001 25.7 2.1 39 154-198 21-59 (89)
192 2jrp_A Putative cytoplasmic pr 27.6 52 0.0018 24.1 3.3 11 157-167 3-13 (81)
193 1x3h_A Leupaxin; paxillin fami 27.5 23 0.00077 23.8 1.3 35 157-195 16-52 (80)
194 1zau_A DNA ligase; AMP; HET: D 27.3 22 0.00075 31.9 1.5 14 1-14 39-52 (328)
195 1lv3_A Hypothetical protein YA 27.3 31 0.001 24.6 1.9 18 182-199 7-24 (68)
196 3u4j_A NAD-dependent aldehyde 27.1 1E+02 0.0035 28.6 6.1 67 2-68 281-374 (528)
197 2co8_A NEDD9 interacting prote 27.0 41 0.0014 23.0 2.6 36 157-195 16-53 (82)
198 2cur_A Skeletal muscle LIM-pro 26.9 21 0.00073 23.3 1.0 35 157-195 6-42 (69)
199 2vl6_A SSO MCM N-TER, minichro 26.8 37 0.0013 28.5 2.8 38 158-198 143-184 (268)
200 1b04_A Protein (DNA ligase); D 26.8 22 0.00076 31.7 1.4 14 1-14 32-45 (318)
201 2cuq_A Four and A half LIM dom 26.7 29 0.001 23.2 1.8 35 157-195 16-52 (80)
202 3ek1_A Aldehyde dehydrogenase; 26.7 1.2E+02 0.0041 28.0 6.4 68 2-69 288-382 (504)
203 1rqg_A Methionyl-tRNA syntheta 26.6 23 0.0008 34.3 1.6 43 155-199 139-185 (722)
204 1y02_A CARP2, FYVE-ring finger 26.5 33 0.0011 26.5 2.1 32 148-193 13-44 (120)
205 2nn6_I 3'-5' exoribonuclease C 26.4 32 0.0011 28.5 2.3 28 154-193 167-194 (209)
206 2drp_A Protein (tramtrack DNA- 26.4 18 0.00061 22.5 0.6 36 158-194 12-50 (66)
207 3jsl_A DNA ligase; NAD+-depend 26.1 23 0.0008 31.6 1.4 14 1-14 30-43 (318)
208 3gmt_A Adenylate kinase; ssgci 26.0 18 0.00062 30.5 0.7 35 157-199 132-166 (230)
209 3iwj_A Putative aminoaldehyde 25.9 1.4E+02 0.0046 27.5 6.6 67 3-69 272-365 (503)
210 2lv2_A Insulinoma-associated p 25.7 25 0.00084 24.8 1.2 38 158-195 30-67 (85)
211 1yop_A KTI11P; zinc finger, me 25.7 23 0.00078 26.0 1.1 39 154-198 21-59 (83)
212 1wfk_A Zinc finger, FYVE domai 25.7 37 0.0013 24.5 2.2 26 157-194 10-35 (88)
213 1ta8_A DNA ligase, NAD-depende 25.7 24 0.00082 31.7 1.4 14 1-14 37-50 (332)
214 2yt9_A Zinc finger-containing 25.6 20 0.0007 23.8 0.8 12 183-194 64-75 (95)
215 1l1o_C Replication protein A 7 25.6 34 0.0012 27.5 2.2 34 148-193 36-71 (181)
216 3pqa_A Lactaldehyde dehydrogen 25.6 1.5E+02 0.0051 27.2 6.8 67 2-68 252-345 (486)
217 2ee8_A Protein ODD-skipped-rel 25.5 23 0.00078 24.1 1.0 38 157-194 46-83 (106)
218 3lvy_A Carboxymuconolactone de 25.5 92 0.0031 25.2 4.8 48 1-54 117-164 (207)
219 1uxt_A Glyceraldehyde-3-phosph 25.5 1.3E+02 0.0046 27.5 6.5 68 2-69 274-368 (501)
220 4glx_A DNA ligase; inhibitor, 25.0 21 0.00072 34.4 1.0 23 40-62 172-194 (586)
221 1euh_A NADP dependent non phos 25.0 1.1E+02 0.0039 27.7 5.9 67 2-68 261-353 (475)
222 2f9y_B Acetyl-coenzyme A carbo 25.0 10 0.00035 33.3 -1.1 37 156-201 24-60 (304)
223 2e72_A POGO transposable eleme 24.8 4 0.00014 27.7 -2.9 35 156-200 12-46 (49)
224 2y53_A Aldehyde dehydrogenase 24.7 2E+02 0.0069 26.5 7.6 64 5-68 279-368 (534)
225 2gnr_A Conserved hypothetical 24.7 66 0.0023 25.2 3.7 31 149-193 40-70 (145)
226 1wyh_A SLIM 2, skeletal muscle 24.3 37 0.0013 22.2 1.9 36 156-195 5-44 (72)
227 1f6y_A 5-methyltetrahydrofolat 24.2 1.4E+02 0.0046 25.4 5.9 65 3-67 54-123 (262)
228 2riq_A Poly [ADP-ribose] polym 24.2 29 0.00098 28.3 1.5 13 156-169 78-90 (160)
229 3my7_A Alcohol dehydrogenase/a 24.1 60 0.002 29.4 3.8 55 3-59 224-289 (452)
230 3r64_A NAD dependent benzaldeh 24.0 1.7E+02 0.006 26.8 7.0 67 3-69 272-365 (508)
231 2cw9_A Translocase of inner mi 24.0 25 0.00086 28.6 1.1 32 30-61 66-102 (194)
232 1x62_A C-terminal LIM domain p 24.0 26 0.0009 23.7 1.1 36 156-195 15-52 (79)
233 2d8z_A Four and A half LIM dom 24.0 29 0.00099 22.7 1.3 35 157-195 6-42 (70)
234 3mpx_A FYVE, rhogef and PH dom 23.8 17 0.00057 32.1 0.0 34 147-194 368-401 (434)
235 1uzb_A 1-pyrroline-5-carboxyla 23.8 1.5E+02 0.0053 27.2 6.5 66 2-68 299-390 (516)
236 1o04_A Aldehyde dehydrogenase, 23.7 1.2E+02 0.0041 27.9 5.8 68 2-69 279-373 (500)
237 1nyp_A Pinch protein; LIM doma 23.5 31 0.0011 22.3 1.4 36 156-195 5-42 (66)
238 2kpi_A Uncharacterized protein 23.5 46 0.0016 22.4 2.2 30 158-199 12-43 (56)
239 3rmt_A 3-phosphoshikimate 1-ca 23.3 86 0.0029 28.8 4.7 50 26-75 318-376 (455)
240 1x6a_A LIMK-2, LIM domain kina 23.2 58 0.002 21.8 2.8 34 158-195 17-52 (81)
241 2epz_A Zinc finger protein 28 23.2 31 0.0011 19.9 1.2 8 158-165 14-21 (46)
242 3axs_A Probable N(2),N(2)-dime 23.0 43 0.0015 30.2 2.6 36 153-197 241-276 (392)
243 1x61_A Thyroid receptor intera 23.0 44 0.0015 21.9 2.0 35 157-195 6-44 (72)
244 2ba3_A NIKA; dimer, bacterial 22.9 48 0.0017 20.9 2.1 19 44-62 22-40 (51)
245 2w8n_A Succinate-semialdehyde 22.8 1.2E+02 0.0041 27.7 5.6 68 2-69 269-364 (487)
246 3pih_A Uvrabc system protein A 22.8 30 0.001 34.9 1.7 32 157-199 250-291 (916)
247 1vzi_A Desulfoferrodoxin; ferr 22.6 26 0.00088 27.1 0.9 30 158-198 9-38 (126)
248 3twl_A Formamidopyrimidine-DNA 22.5 26 0.0009 30.9 1.0 37 149-193 236-278 (310)
249 1x4l_A Skeletal muscle LIM-pro 22.5 34 0.0012 22.5 1.4 38 157-195 6-46 (72)
250 2kv5_A FST, putative uncharact 22.3 87 0.003 19.5 3.1 21 131-151 7-27 (33)
251 1h7b_A Anaerobic ribonucleotid 22.3 19 0.00066 34.7 0.1 26 157-192 541-566 (605)
252 2j6l_A Aldehyde dehydrogenase 22.2 1.8E+02 0.0062 26.6 6.6 67 3-69 281-374 (500)
253 2dmi_A Teashirt homolog 3; zin 22.1 73 0.0025 21.9 3.2 13 183-195 79-91 (115)
254 2r6f_A Excinuclease ABC subuni 22.0 34 0.0012 35.0 1.8 31 157-198 268-308 (972)
255 2ppt_A Thioredoxin-2; thiredox 22.0 54 0.0018 24.6 2.6 30 157-194 15-44 (155)
256 2ygr_A Uvrabc system protein A 21.9 32 0.0011 35.2 1.7 33 156-199 275-318 (993)
257 2kmk_A Zinc finger protein GFI 21.8 13 0.00044 23.9 -0.9 10 184-193 57-66 (82)
258 2i5b_A Phosphomethylpyrimidine 21.6 2E+02 0.0068 23.1 6.2 53 7-67 125-179 (271)
259 2kr4_A Ubiquitin conjugation f 21.6 47 0.0016 23.1 2.0 20 143-167 40-59 (85)
260 2dar_A PDZ and LIM domain prot 21.4 30 0.001 24.1 0.9 36 156-195 25-62 (90)
261 3kom_A Transketolase; rossmann 21.0 75 0.0026 30.7 3.9 21 1-21 267-287 (663)
262 1chc_A Equine herpes virus-1 r 21.0 56 0.0019 21.0 2.2 17 157-173 41-57 (68)
263 3a1g_A RNA-directed RNA polyme 20.8 94 0.0032 22.8 3.5 31 27-59 43-73 (80)
264 1hf2_A MINC, septum site-deter 20.6 85 0.0029 25.8 3.7 27 36-62 37-72 (210)
265 3i44_A Aldehyde dehydrogenase; 20.6 1.8E+02 0.0061 26.7 6.3 50 18-67 307-372 (497)
266 2ej4_A Zinc finger protein ZIC 20.4 21 0.00073 23.7 -0.0 41 155-195 24-73 (95)
267 3d55_A Antitoxin, uncharacteri 20.3 48 0.0016 23.5 1.9 49 2-56 39-87 (91)
268 2wme_A BADH, betaine aldehyde 20.3 2.8E+02 0.0095 25.5 7.5 67 3-69 264-357 (490)
269 3e20_C Eukaryotic peptide chai 20.3 23 0.00079 32.7 0.2 38 158-200 339-379 (441)
270 2ytr_A Zinc finger protein 347 20.2 39 0.0013 19.3 1.2 8 158-165 14-21 (46)
271 2em5_A ZFP-95, zinc finger pro 20.1 31 0.0011 19.9 0.7 9 185-193 13-21 (46)
No 1
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=96.75 E-value=0.0011 Score=58.42 Aligned_cols=50 Identities=24% Similarity=0.468 Sum_probs=37.1
Q ss_pred HHHHHHHhhhccceeeecCCCCCccc-ceeeccccccccCCCCcCceeCCCCCceeEEecCc
Q 028248 140 LSQSLTKLIVRESLILKGPCPNCGTE-NVSFFGTILSISSGGTTNTINCSNCGTTMVYDSNT 200 (211)
Q Consensus 140 ~a~~lt~~~~~d~liLkG~CPnCg~E-v~aFfg~i~~v~s~~~~~~~kC~~C~~~L~f~~~~ 200 (211)
.|..||.-|+..+. -|||||.. ...| ++|+.....-|++|.+..+..++.
T Consensus 22 ~aRVLTE~Wv~~n~----yCPnCG~~~l~~f-------~nN~PVaDF~C~~C~EeyELKSk~ 72 (257)
T 4esj_A 22 KARILTEDWVYRQS----YCPNCGNNPLNHF-------ENNRPVADFYCNHCSEEFELKSKK 72 (257)
T ss_dssp HHHHHHHHHHHHHC----CCTTTCCSSCEEC-----------CCCEEECTTTCCEEEEEEEE
T ss_pred eehhhhHHHHHHCC----cCCCCCChhhhhc-------cCCCcccccccCCcchhheecccc
Confidence 46677887777665 89999996 4466 667777889999999999998863
No 2
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=95.78 E-value=0.0088 Score=43.08 Aligned_cols=43 Identities=26% Similarity=0.538 Sum_probs=35.5
Q ss_pred eecCCCCCcccceeeccccccccCCCCcCceeCCCCCceeEEecCceeEeCC
Q 028248 155 LKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYDSNTRLITLP 206 (211)
Q Consensus 155 LkG~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L~f~~~~r~i~~p 206 (211)
++=.||.|+.+...| ..++..+.|.+|++.|.--+..+.+.+.
T Consensus 6 m~VKCp~C~niq~VF---------ShA~tvV~C~~Cg~~L~~PTGGKA~l~~ 48 (66)
T 1qxf_A 6 VKVKCPDCEHEQVIF---------DHPSTIVKCIICGRTVAEPTGGKGNIKA 48 (66)
T ss_dssp EEEECTTTCCEEEEE---------SSCSSCEECSSSCCEEEECCSSSCEECS
T ss_pred EEEECCCCCCceEEE---------ecCceEEEcccCCCEEeecCCcceeeeh
Confidence 677899999999999 2368899999999999888876665553
No 3
>1b04_A Protein (DNA ligase); DNA replication; 2.80A {Geobacillus stearothermophilus} SCOP: d.142.2.2
Probab=95.77 E-value=0.0084 Score=54.02 Aligned_cols=25 Identities=36% Similarity=0.634 Sum_probs=21.6
Q ss_pred HHhhh-cCCCccChHHHHHHHHHHhh
Q 028248 34 SMAYV-AGKPIMSDEEYDKLKQKLKM 58 (211)
Q Consensus 34 ~~aY~-~G~Pi~sD~efD~Lk~~Lk~ 58 (211)
-.+|| .|+|+|||+|||+|.++|+.
T Consensus 21 ~~~YY~~d~p~IsD~eYD~L~~eL~~ 46 (318)
T 1b04_A 21 GYEYYVLDRPSVPDAEYDRLMQELIA 46 (318)
T ss_dssp HHHHHTTCSCCSSCHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 34676 69999999999999999874
No 4
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=95.49 E-value=0.016 Score=41.37 Aligned_cols=43 Identities=28% Similarity=0.632 Sum_probs=35.0
Q ss_pred eecCCCCCcccceeeccccccccCCCCcCceeCCCCCceeEEecCceeEeCC
Q 028248 155 LKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYDSNTRLITLP 206 (211)
Q Consensus 155 LkG~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L~f~~~~r~i~~p 206 (211)
++=.||.|+.+...| ..++..+.|.+|++.|.--+..+.+...
T Consensus 14 m~VkCp~C~~~q~VF---------Sha~t~V~C~~Cgt~L~~PTGGKa~l~~ 56 (63)
T 3j20_W 14 LRVKCIDCGNEQIVF---------SHPATKVRCLICGATLVEPTGGKGIVKA 56 (63)
T ss_dssp EEEECSSSCCEEEEE---------SSCSSCEECSSSCCEEEECCSSSCEECS
T ss_pred EEEECCCCCCeeEEE---------ecCCeEEEccCcCCEEecCCCCcEEEEE
Confidence 677899999999998 2268899999999999888766655543
No 5
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=94.55 E-value=0.051 Score=40.50 Aligned_cols=42 Identities=19% Similarity=0.486 Sum_probs=36.3
Q ss_pred eecCCCCCcccceeeccccccccCCCCcCceeCCCCCceeEEecCceeEeC
Q 028248 155 LKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYDSNTRLITL 205 (211)
Q Consensus 155 LkG~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L~f~~~~r~i~~ 205 (211)
++-.||.|+.+...| + .++..+.|.+|++.|.--+..+.+.+
T Consensus 31 m~VkCp~C~n~q~VF-------S--hA~t~V~C~~Cg~~L~~PTGGKA~l~ 72 (81)
T 2xzm_6 31 MDVKCAQCQNIQMIF-------S--NAQSTIICEKCSAILCKPTGGKVQIQ 72 (81)
T ss_dssp EEEECSSSCCEEEEE-------T--TCSSCEECSSSCCEEEEECSSCEEEC
T ss_pred EEeECCCCCCeeEEE-------e--cCccEEEccCCCCEEeecCCCCeEec
Confidence 777899999999999 1 36889999999999999888777766
No 6
>3jsl_A DNA ligase; NAD+-dependent, DNA damage, DNA repair, DNA replication, magnesium, manganese, metal-binding, NAD, zinc; HET: DNA; 1.80A {Staphylococcus aureus} SCOP: d.142.2.2 PDB: 3jsn_A*
Probab=94.52 E-value=0.03 Score=50.50 Aligned_cols=25 Identities=40% Similarity=0.620 Sum_probs=21.2
Q ss_pred HHhhhc-CCCccChHHHHHHHHHHhh
Q 028248 34 SMAYVA-GKPIMSDEEYDKLKQKLKM 58 (211)
Q Consensus 34 ~~aY~~-G~Pi~sD~efD~Lk~~Lk~ 58 (211)
-.+||. |+|+|||+|||+|.++|+.
T Consensus 19 ~~~YY~~d~p~IsD~eYD~L~~eL~~ 44 (318)
T 3jsl_A 19 SYEYYVEDNPSVPDSEYDKLLHELIK 44 (318)
T ss_dssp HHHHHTSCCCSSCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 346775 9999999999999998864
No 7
>3uq8_A DNA ligase; adenylated protein, ATP-grAsp, rossman fold, adenylation; HET: DNA NAD AMP; 1.70A {Haemophilus influenzae} PDB: 3pn1_A* 3bac_A*
Probab=94.46 E-value=0.031 Score=50.47 Aligned_cols=26 Identities=35% Similarity=0.590 Sum_probs=22.1
Q ss_pred HHHhhhc-CCCccChHHHHHHHHHHhh
Q 028248 33 ASMAYVA-GKPIMSDEEYDKLKQKLKM 58 (211)
Q Consensus 33 A~~aY~~-G~Pi~sD~efD~Lk~~Lk~ 58 (211)
+-.+||. ++|+|||+|||+|.++|+.
T Consensus 16 ~~~~YY~~d~p~IsD~eYD~L~~eL~~ 42 (322)
T 3uq8_A 16 YEYEYHVLDNPSVPDSEYDRLFHQLKA 42 (322)
T ss_dssp HHHHHHTSSCCSSCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 3457886 9999999999999999865
No 8
>4glw_A DNA ligase; inhibitor, ligase-ligase inhibitor complex; HET: DNA 0XT NMN; 2.00A {Streptococcus pneumoniae}
Probab=94.41 E-value=0.0069 Score=53.98 Aligned_cols=25 Identities=36% Similarity=0.632 Sum_probs=3.8
Q ss_pred HHhhh-cCCCccChHHHHHHHHHHhh
Q 028248 34 SMAYV-AGKPIMSDEEYDKLKQKLKM 58 (211)
Q Consensus 34 ~~aY~-~G~Pi~sD~efD~Lk~~Lk~ 58 (211)
-.+|| .|+|+|||+|||+|.++|+.
T Consensus 16 ~~~YY~~~~p~IsD~eYD~L~~eL~~ 41 (305)
T 4glw_A 16 ATEYYTSDNPSVSDSEYDRLYRELVE 41 (305)
T ss_dssp ---------------------CHHHH
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 45777 59999999999999988874
No 9
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=94.27 E-value=0.041 Score=41.12 Aligned_cols=44 Identities=20% Similarity=0.467 Sum_probs=36.1
Q ss_pred eeecCCCCCcccceeeccccccccCCCCcCceeCCCCCceeEEecCceeEeCC
Q 028248 154 ILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYDSNTRLITLP 206 (211)
Q Consensus 154 iLkG~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L~f~~~~r~i~~p 206 (211)
-++-.||.|+.+...| + .++..+.|.+|++.|.--+....+.+.
T Consensus 32 Fm~VkCp~C~~~q~VF-------S--ha~t~V~C~~Cg~~L~~PTGGKa~l~e 75 (82)
T 3u5c_b 32 FLDVKCPGCLNITTVF-------S--HAQTAVTCESCSTILCTPTGGKAKLSE 75 (82)
T ss_dssp EEEEECTTSCSCEEEE-------S--BCSSCCCCSSSCCCCEECCSSBCEECS
T ss_pred EEEEECCCCCCeeEEE-------e--cCCeEEEccccCCEEeccCCCCeEecC
Confidence 3677899999999999 1 268899999999999988877666554
No 10
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=94.01 E-value=0.043 Score=53.87 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=21.5
Q ss_pred HHhhh-cCCCccChHHHHHHHHHHhh
Q 028248 34 SMAYV-AGKPIMSDEEYDKLKQKLKM 58 (211)
Q Consensus 34 ~~aY~-~G~Pi~sD~efD~Lk~~Lk~ 58 (211)
-.+|| .++|+|||+|||+|.++|+.
T Consensus 19 ~~~YY~~d~p~isD~eYD~L~~eL~~ 44 (671)
T 2owo_A 19 EYLYHVMDAPEIPDAEYDRLMRELRE 44 (671)
T ss_dssp HHHHHHTTCSSBCCTHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 45666 68999999999999999875
No 11
>1ta8_A DNA ligase, NAD-dependent; nucleotidyl transferase fold; HET: DNA NMN; 1.80A {Enterococcus faecalis} SCOP: d.142.2.2 PDB: 3ba8_A* 1tae_A* 3ba9_A* 3baa_A* 3bab_A*
Probab=93.94 E-value=0.036 Score=50.23 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=21.6
Q ss_pred Hhhh-cCCCccChHHHHHHHHHHhhh
Q 028248 35 MAYV-AGKPIMSDEEYDKLKQKLKME 59 (211)
Q Consensus 35 ~aY~-~G~Pi~sD~efD~Lk~~Lk~~ 59 (211)
.+|| .|+|+|||+|||+|.++|+.-
T Consensus 27 ~~YY~~d~p~IsD~eYD~L~~eL~~l 52 (332)
T 1ta8_A 27 HEYYVKDQPSVEDYVYDRLYKELVDI 52 (332)
T ss_dssp HHHHTSSCCSSCHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHH
Confidence 4676 699999999999999998753
No 12
>1zau_A DNA ligase; AMP; HET: DNA AMP; 3.15A {Mycobacterium tuberculosis}
Probab=93.94 E-value=0.045 Score=49.43 Aligned_cols=25 Identities=36% Similarity=0.670 Sum_probs=21.6
Q ss_pred Hhhh-cCCCccChHHHHHHHHHHhhh
Q 028248 35 MAYV-AGKPIMSDEEYDKLKQKLKME 59 (211)
Q Consensus 35 ~aY~-~G~Pi~sD~efD~Lk~~Lk~~ 59 (211)
.+|| .|+|+|||+|||+|.++|+.-
T Consensus 29 ~~YY~~d~p~IsD~eYD~L~~eL~~l 54 (328)
T 1zau_A 29 FRYYVRDAPIISDAEFDELLRRLEAL 54 (328)
T ss_dssp HHHTTTCCCSSCTHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHH
Confidence 4677 599999999999999999753
No 13
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=93.21 E-value=0.04 Score=46.37 Aligned_cols=33 Identities=27% Similarity=0.610 Sum_probs=22.1
Q ss_pred eeecCCCCCcc-cceeeccccccccCCCCcCceeCCCCCceeEE
Q 028248 154 ILKGPCPNCGT-ENVSFFGTILSISSGGTTNTINCSNCGTTMVY 196 (211)
Q Consensus 154 iLkG~CPnCg~-Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L~f 196 (211)
.-+++||+||- .-+.||. .+ ...||+||..-.+
T Consensus 12 ~~~~~CP~Cg~~d~~~~~~-----dg-----~~~C~~Cg~~~~~ 45 (255)
T 1nui_A 12 LYHIPCDNCGSSDGNSLFS-----DG-----HTFCYVCEKWTAG 45 (255)
T ss_dssp EEEECCSSSCCSSCEEEET-----TS-----CEEETTTCCEEC-
T ss_pred ecCCcCCCCCCCCCceEeC-----CC-----CeecccCCCcCCC
Confidence 36899999987 3344441 11 3999999977544
No 14
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=93.12 E-value=0.055 Score=52.29 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=21.5
Q ss_pred HHhhh-cCCCccChHHHHHHHHHHhh
Q 028248 34 SMAYV-AGKPIMSDEEYDKLKQKLKM 58 (211)
Q Consensus 34 ~~aY~-~G~Pi~sD~efD~Lk~~Lk~ 58 (211)
-.+|| .|+|+|||+|||+|.++|+.
T Consensus 19 ~~~Yy~~~~p~IsD~eYD~L~~eL~~ 44 (586)
T 4glx_A 19 EYLYHVMDAPEIPDAEYDRLMRELRE 44 (586)
T ss_dssp HHHHHHTTCSSBCCTHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 35677 59999999999999999875
No 15
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=92.96 E-value=0.053 Score=53.15 Aligned_cols=27 Identities=37% Similarity=0.567 Sum_probs=22.7
Q ss_pred HHhhh-cCCCccChHHHHHHHHHHhhhC
Q 028248 34 SMAYV-AGKPIMSDEEYDKLKQKLKMEG 60 (211)
Q Consensus 34 ~~aY~-~G~Pi~sD~efD~Lk~~Lk~~G 60 (211)
-.+|| .++|+|||+|||+|.++|+.-=
T Consensus 21 ~~~YY~~d~p~isD~eYD~l~~eL~~lE 48 (667)
T 1dgs_A 21 NYRYYVLADPEISDAEYDRLLRELKELE 48 (667)
T ss_dssp HHHHHTTCCCCSCSSSSHHHHHHHHHHT
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 34677 6999999999999999998543
No 16
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=92.26 E-value=0.057 Score=40.65 Aligned_cols=44 Identities=14% Similarity=0.358 Sum_probs=34.8
Q ss_pred eeecCCCCCcccceeeccccccccCCCCcCceeCCCCCceeEEecCceeEeCC
Q 028248 154 ILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYDSNTRLITLP 206 (211)
Q Consensus 154 iLkG~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L~f~~~~r~i~~p 206 (211)
-++-.||.|+.+...| ..++..+.|.+|++.|.--+..+.+.+.
T Consensus 34 Fm~VkCp~C~~~~~VF---------ShA~t~V~C~~CgtvL~~PTGGKa~l~e 77 (86)
T 3iz6_X 34 FMDVKCQGCFNITTVF---------SHSQTVVVCPGCQTVLCQPTGGKARLTE 77 (86)
T ss_dssp EEEEECTTTCCEEEEE---------TTCSSCCCCSSSCCCCSCCCSSSCCCSC
T ss_pred EeEEECCCCCCeeEEE---------ecCCcEEEccCCCCEeecCCCCCEEecC
Confidence 3777899999999999 2268899999999999777666555443
No 17
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=91.72 E-value=0.086 Score=34.54 Aligned_cols=29 Identities=24% Similarity=0.710 Sum_probs=21.5
Q ss_pred CCCCCcccceeeccccccccCCCCcCceeCCCCCceeE
Q 028248 158 PCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMV 195 (211)
Q Consensus 158 ~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L~ 195 (211)
.||+||.+...| + ..+.+..|+.||..+.
T Consensus 7 ~CP~C~~~~l~~------d---~~~gelvC~~CG~v~~ 35 (50)
T 1pft_A 7 VCPACESAELIY------D---PERGEIVCAKCGYVIE 35 (50)
T ss_dssp SCTTTSCCCEEE------E---TTTTEEEESSSCCBCC
T ss_pred eCcCCCCcceEE------c---CCCCeEECcccCCccc
Confidence 699999865555 1 1467899999998653
No 18
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=90.80 E-value=0.14 Score=34.45 Aligned_cols=38 Identities=26% Similarity=0.652 Sum_probs=24.4
Q ss_pred ecCCCCCcccceeecccccc-ccCCCCcCceeCCCCCcee
Q 028248 156 KGPCPNCGTENVSFFGTILS-ISSGGTTNTINCSNCGTTM 194 (211)
Q Consensus 156 kG~CPnCg~Ev~aFfg~i~~-v~s~~~~~~~kC~~C~~~L 194 (211)
.-+||.||.....|+-. -. .+....+.-.+|.+||..-
T Consensus 15 ~~~Cp~Cg~~~~~~~q~-Q~rsadep~T~fy~C~~Cg~~w 53 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEM-QTRAGDEPSTIFYKCTKCGHTW 53 (57)
T ss_dssp ECCCTTTCCSEEEEEEE-CCSSSSCSSEEEEEESSSCCEE
T ss_pred EeECCCCCCCEEEEEEe-ecccCCCCCcEEEEcCCCCCEe
Confidence 56899999977676622 21 1112234567999999753
No 19
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=90.51 E-value=0.15 Score=34.27 Aligned_cols=29 Identities=28% Similarity=0.629 Sum_probs=21.6
Q ss_pred eecCCCCCcccceeeccccccccCCCCcCceeCCCCCce
Q 028248 155 LKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTT 193 (211)
Q Consensus 155 LkG~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~ 193 (211)
+.--||.||..++-. . ...+..|+.||-+
T Consensus 18 ~~k~CP~CG~~~fm~--~--------~~~R~~C~kCG~t 46 (50)
T 3j20_Y 18 KNKFCPRCGPGVFMA--D--------HGDRWACGKCGYT 46 (50)
T ss_dssp SSEECSSSCSSCEEE--E--------CSSEEECSSSCCE
T ss_pred ecccCCCCCCceEEe--c--------CCCeEECCCCCCE
Confidence 556799999987644 1 2468899999854
No 20
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=89.62 E-value=0.13 Score=36.89 Aligned_cols=40 Identities=25% Similarity=0.639 Sum_probs=27.3
Q ss_pred eeecCCCCCcccceeeccccccccCCCCcCceeCCCCCceeEEec-CceeEe
Q 028248 154 ILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYDS-NTRLIT 204 (211)
Q Consensus 154 iLkG~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L~f~~-~~r~i~ 204 (211)
-+.=.|++||.+|--- ....+.|+.||..+.|.. +.|.+.
T Consensus 26 ~v~Y~C~~CG~~~e~~-----------~~d~irCp~CG~RILyK~R~~r~v~ 66 (70)
T 1twf_L 26 TLKYICAECSSKLSLS-----------RTDAVRCKDCGHRILLKARTKRLVQ 66 (70)
T ss_dssp CCCEECSSSCCEECCC-----------TTSTTCCSSSCCCCCBCCCCSSCEE
T ss_pred eEEEECCCCCCcceeC-----------CCCCccCCCCCceEeEecCCCccEE
Confidence 3566799999997533 234568999999666655 444443
No 21
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=89.58 E-value=0.2 Score=34.40 Aligned_cols=29 Identities=21% Similarity=0.401 Sum_probs=22.2
Q ss_pred CCCCCcccceeeccccccccCCCCcCceeCCCCCceeE
Q 028248 158 PCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMV 195 (211)
Q Consensus 158 ~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L~ 195 (211)
.||+||.+...| + ....+..|.+||..+.
T Consensus 13 ~Cp~C~~~~lv~------D---~~~ge~vC~~CGlVl~ 41 (58)
T 1dl6_A 13 TCPNHPDAILVE------D---YRAGDMICPECGLVVG 41 (58)
T ss_dssp SBTTBSSSCCEE------C---SSSCCEECTTTCCEEC
T ss_pred cCcCCCCCceeE------e---CCCCeEEeCCCCCEEe
Confidence 699999866555 1 2577899999998774
No 22
>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=88.74 E-value=0.14 Score=43.47 Aligned_cols=52 Identities=23% Similarity=0.507 Sum_probs=33.6
Q ss_pred HHHHHH-hhhccceeeecCCCCCcccceeeccccccccCC-CCcCceeCCCCCcee
Q 028248 141 SQSLTK-LIVRESLILKGPCPNCGTENVSFFGTILSISSG-GTTNTINCSNCGTTM 194 (211)
Q Consensus 141 a~~lt~-~~~~d~liLkG~CPnCg~Ev~aFfg~i~~v~s~-~~~~~~kC~~C~~~L 194 (211)
.+.++. .-++|-.=|+=.||.|++++. |+++...... -..+...|++|+..+
T Consensus 6 esqi~DeeRfr~c~~l~l~Cp~C~~~~~--F~gv~~~~~~~~~~sg~~C~~C~~~~ 59 (206)
T 3flo_B 6 ETTITDVERFKDTVTLELSCPSCDKRFP--FGGIVSSNYYRVSYNGLQCKHCEQLF 59 (206)
T ss_dssp -----CTTTTTTCCCEEEECTTTCCEEE--ECSSSCCSSEEEETTEEEETTTCCBC
T ss_pred cccCCHHHHhCcCceeEEECCCCCCccC--CCCcccCCCcccccccccCCCCCCcC
Confidence 334444 357888888999999999864 5665532111 256788999999864
No 23
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=87.94 E-value=0.16 Score=41.92 Aligned_cols=26 Identities=35% Similarity=0.655 Sum_probs=18.5
Q ss_pred ecCCCCCcccceeeccccccccCCCCcCceeCCCCCce
Q 028248 156 KGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTT 193 (211)
Q Consensus 156 kG~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~ 193 (211)
+--|++||.-.. |+.. +. +||+||.+
T Consensus 155 ~~~C~~CG~~~~---g~~~-------p~--~CP~C~~~ 180 (191)
T 1lko_A 155 KWRCRNCGYVHE---GTGA-------PE--LCPACAHP 180 (191)
T ss_dssp EEEETTTCCEEE---EEEC-------CS--BCTTTCCB
T ss_pred eEEECCCCCEee---CCCC-------CC--CCCCCcCC
Confidence 677999997643 4422 22 99999985
No 24
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=86.94 E-value=0.085 Score=51.35 Aligned_cols=24 Identities=38% Similarity=0.736 Sum_probs=21.1
Q ss_pred Hhhh-cCCCccChHHHHHHHHHHhh
Q 028248 35 MAYV-AGKPIMSDEEYDKLKQKLKM 58 (211)
Q Consensus 35 ~aY~-~G~Pi~sD~efD~Lk~~Lk~ 58 (211)
.+|| .++|+|||+|||+|.++|+.
T Consensus 29 ~~YY~~d~p~IsD~eYD~L~~eL~~ 53 (615)
T 3sgi_A 29 FRYYVRDAPIISDAEFDELLRRLEA 53 (615)
T ss_dssp HHHHHHSCCCSSCCSSCSSSSHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 5777 79999999999999888864
No 25
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=85.90 E-value=0.34 Score=35.78 Aligned_cols=30 Identities=30% Similarity=0.680 Sum_probs=21.8
Q ss_pred ecCCCCCcccceeeccccccccCCCCcCceeCCCCCceeE
Q 028248 156 KGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMV 195 (211)
Q Consensus 156 kG~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L~ 195 (211)
+=+||+||.+ ..|.. .+..-+|+.|+....
T Consensus 27 ~y~Cp~CG~~--~v~r~--------atGiW~C~~Cg~~~a 56 (83)
T 1vq8_Z 27 DHACPNCGED--RVDRQ--------GTGIWQCSYCDYKFT 56 (83)
T ss_dssp CEECSSSCCE--EEEEE--------ETTEEEETTTCCEEE
T ss_pred cCcCCCCCCc--ceecc--------CCCeEECCCCCCEec
Confidence 5689999984 33333 356899999998754
No 26
>1x3z_A Peptide: N-glycanase; hydrolase-hydrolase inhibitor complex; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A*
Probab=85.75 E-value=0.53 Score=42.86 Aligned_cols=59 Identities=20% Similarity=0.424 Sum_probs=36.7
Q ss_pred HHHHHHHhhhccc--eeeecCCCCCcccc--eee-cccccccc-----CCCCcCceeCCCCCceeEEec
Q 028248 140 LSQSLTKLIVRES--LILKGPCPNCGTEN--VSF-FGTILSIS-----SGGTTNTINCSNCGTTMVYDS 198 (211)
Q Consensus 140 ~a~~lt~~~~~d~--liLkG~CPnCg~Ev--~aF-fg~i~~v~-----s~~~~~~~kC~~C~~~L~f~~ 198 (211)
+...|.+|..+|+ -+.+-||+.||.+- ..+ .|...+.. +.......+|+.||....|-+
T Consensus 101 ll~~LL~WFk~~fF~wvn~p~C~~Cg~~~~~~~~~~g~~~p~~~E~~~ga~~vE~y~C~~C~~~~rFPR 169 (335)
T 1x3z_A 101 LVKELLRYFKQDFFKWCNKPDCNHCGQNTSENMTPLGSQGPNGEESKFNCGTVEIYKCNRCGNITRFPR 169 (335)
T ss_dssp HHHHHHHHHHHTTCEECSSCCCSSSCSSCCSSEEEEEEECCCSGGGSSSEEEEEEEEETTTCCEEEEEE
T ss_pred HHHHHHHHHHhcCCEeeCCCCccccCCCccccccccCCCCCChhhhccCCceEEEeecCCCCcccccCC
Confidence 3445566666664 24689999999773 344 46643221 111233467999999998855
No 27
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=84.01 E-value=0.48 Score=34.14 Aligned_cols=29 Identities=31% Similarity=0.613 Sum_probs=21.4
Q ss_pred CCCCCcccceeeccccccccCCCCcCceeCCCCCceeEEec
Q 028248 158 PCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYDS 198 (211)
Q Consensus 158 ~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L~f~~ 198 (211)
-|| ||.-.++= ..+-..+|+ ||+.+.++.
T Consensus 6 ~C~-C~~~~~~~----------~~~kT~~C~-CG~~~~~~k 34 (71)
T 1gh9_A 6 RCD-CGRALYSR----------EGAKTRKCV-CGRTVNVKD 34 (71)
T ss_dssp EET-TSCCEEEE----------TTCSEEEET-TTEEEECCS
T ss_pred ECC-CCCEEEEc----------CCCcEEECC-CCCeeeece
Confidence 389 99864332 156778898 999998876
No 28
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=83.44 E-value=0.52 Score=32.87 Aligned_cols=20 Identities=40% Similarity=1.198 Sum_probs=14.6
Q ss_pred cCCCCCcccceeeccccccccCCCCcCceeCCCCC
Q 028248 157 GPCPNCGTENVSFFGTILSISSGGTTNTINCSNCG 191 (211)
Q Consensus 157 G~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~ 191 (211)
-.||+||+-. -+|.+ |++||
T Consensus 31 ~~c~~cGe~~--------------~~H~v-c~~CG 50 (60)
T 3v2d_5 31 VPCPECKAMK--------------PPHTV-CPECG 50 (60)
T ss_dssp EECTTTCCEE--------------CTTSC-CTTTC
T ss_pred eECCCCCCee--------------cceEE-cCCCC
Confidence 4699999832 25554 99999
No 29
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=83.30 E-value=0.62 Score=35.44 Aligned_cols=35 Identities=11% Similarity=0.341 Sum_probs=24.0
Q ss_pred ceeeecCCCCCcccceeeccccccccCCCCcCce-eCCCCCce-eEEec
Q 028248 152 SLILKGPCPNCGTENVSFFGTILSISSGGTTNTI-NCSNCGTT-MVYDS 198 (211)
Q Consensus 152 ~liLkG~CPnCg~Ev~aFfg~i~~v~s~~~~~~~-kC~~C~~~-L~f~~ 198 (211)
..-+..-|++||+++.. ..... .||.||.. +.+.+
T Consensus 69 ~~p~~~~C~~CG~~~e~------------~~~~~~~CP~Cgs~~~~i~~ 105 (119)
T 2kdx_A 69 DEKVELECKDCSHVFKP------------NALDYGVCEKCHSKNVIITQ 105 (119)
T ss_dssp EECCEEECSSSSCEECS------------CCSTTCCCSSSSSCCCEEEE
T ss_pred eccceEEcCCCCCEEeC------------CCCCCCcCccccCCCcEEec
Confidence 33467889999987543 13456 89999988 44444
No 30
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=83.24 E-value=0.52 Score=38.44 Aligned_cols=25 Identities=32% Similarity=0.745 Sum_probs=16.7
Q ss_pred ecCCCCCcccceeeccccccccCCCCcCceeCCCCCce
Q 028248 156 KGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTT 193 (211)
Q Consensus 156 kG~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~ 193 (211)
+--|||||.-.. +. .+. +||+||.+
T Consensus 138 ~~~C~~CG~i~~---~~--------~p~--~CP~Cg~~ 162 (170)
T 3pwf_A 138 VYICPICGYTAV---DE--------APE--YCPVCGAP 162 (170)
T ss_dssp EEECTTTCCEEE---SC--------CCS--BCTTTCCB
T ss_pred eeEeCCCCCeeC---CC--------CCC--CCCCCCCC
Confidence 345999997543 21 232 99999964
No 31
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=82.87 E-value=0.48 Score=33.54 Aligned_cols=33 Identities=27% Similarity=0.734 Sum_probs=26.5
Q ss_pred eecCCCCCcccceeeccccccccCCCCcCceeCCCCCceeEEec
Q 028248 155 LKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYDS 198 (211)
Q Consensus 155 LkG~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L~f~~ 198 (211)
++=-|..||.||.-= .....+|+.||..+.|-.
T Consensus 20 v~Y~C~~Cg~~~~l~-----------~~~~iRC~~CG~RILyK~ 52 (63)
T 3h0g_L 20 MIYLCADCGARNTIQ-----------AKEVIRCRECGHRVMYKM 52 (63)
T ss_dssp CCCBCSSSCCBCCCC-----------SSSCCCCSSSCCCCCBCC
T ss_pred eEEECCCCCCeeecC-----------CCCceECCCCCcEEEEEe
Confidence 667899999998621 246799999999988865
No 32
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=82.77 E-value=0.53 Score=37.27 Aligned_cols=31 Identities=19% Similarity=0.536 Sum_probs=21.9
Q ss_pred eeeecCCCCCcccceeeccccccccCCCCcCceeCCCCCceeE
Q 028248 153 LILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMV 195 (211)
Q Consensus 153 liLkG~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L~ 195 (211)
..=.-.|+.||.+.-.+ .....||.||..+.
T Consensus 129 ~~~~y~C~~Cg~~~~~~------------~~~~~Cp~CG~~~~ 159 (165)
T 2lcq_A 129 IKWRYVCIGCGRKFSTL------------PPGGVCPDCGSKVK 159 (165)
T ss_dssp CCCCEEESSSCCEESSC------------CGGGBCTTTCCBEE
T ss_pred ccEEEECCCCCCcccCC------------CCCCcCCCCCCcce
Confidence 33456799999876544 23458999999853
No 33
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=81.36 E-value=0.93 Score=36.87 Aligned_cols=32 Identities=34% Similarity=0.732 Sum_probs=24.6
Q ss_pred ccceeeecCCCCCcccceeeccccccccCCCCcCceeCCCCCce
Q 028248 150 RESLILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTT 193 (211)
Q Consensus 150 ~d~liLkG~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~ 193 (211)
+++=.+..-||.||....-- + ++.+|++||..
T Consensus 134 ~~lGvv~a~~~~~g~~m~~~-----------~-~~~~cp~~g~~ 165 (179)
T 3m7n_A 134 EEMGVLRALCSNCKTEMVRE-----------G-DILKCPECGRV 165 (179)
T ss_dssp TTCEEEECBCTTTCCBCEEC-----------S-SSEECSSSCCE
T ss_pred CCCCEEEecccccCCceEEC-----------C-CEEECCCCCCE
Confidence 45555889999999887432 4 78999999974
No 34
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=80.55 E-value=0.45 Score=44.18 Aligned_cols=31 Identities=29% Similarity=0.845 Sum_probs=17.9
Q ss_pred eecCCCCCcccc--------eeeccccccccCCCCcCceeCCCCCc
Q 028248 155 LKGPCPNCGTEN--------VSFFGTILSISSGGTTNTINCSNCGT 192 (211)
Q Consensus 155 LkG~CPnCg~Ev--------~aFfg~i~~v~s~~~~~~~kC~~C~~ 192 (211)
+...|||||+.- --|||.|. -....|+.||-
T Consensus 11 ~~s~Cp~C~~~g~t~~~~~~IP~F~eVi-------i~Sf~C~~CGy 49 (404)
T 2qkd_A 11 IESLCMNCYRNGTTRLLLTKIPFFREII-------VSSFSCEHCGW 49 (404)
T ss_dssp CEEECTTTSSEEEEEEEEEEETTTEEEE-------EEEEECTTTCC
T ss_pred ccccCCCCCCCceEEEEEEcCCCCceEE-------EEEEECCCCCC
Confidence 456677777432 23555555 34567777773
No 35
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=80.31 E-value=1.1 Score=33.17 Aligned_cols=36 Identities=22% Similarity=0.408 Sum_probs=25.7
Q ss_pred cCCCCCcccceeeccccccccCCCCcCceeCCCCCceeEE
Q 028248 157 GPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVY 196 (211)
Q Consensus 157 G~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L~f 196 (211)
=.||.|+.|...=..- ........+.|.+||..-++
T Consensus 24 F~CPfCnh~~sV~vki----dk~~~~g~l~C~~Cg~~~~~ 59 (85)
T 1wii_A 24 FTCPFCNHEKSCDVKM----DRARNTGVISCTVCLEEFQT 59 (85)
T ss_dssp CCCTTTCCSSCEEEEE----ETTTTEEEEEESSSCCEEEE
T ss_pred EcCCCCCCCCeEEEEE----EccCCEEEEEcccCCCeEEe
Confidence 3799999996443322 23346889999999986655
No 36
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=78.69 E-value=0.81 Score=28.08 Aligned_cols=22 Identities=27% Similarity=0.673 Sum_probs=17.8
Q ss_pred CCCCCcccceeeccccccccCCCCcCceeCCCCCce
Q 028248 158 PCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTT 193 (211)
Q Consensus 158 ~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~ 193 (211)
.||.|+.-||+. +..|..|+++
T Consensus 8 ~C~~C~~~Nfa~--------------R~~C~~C~~p 29 (33)
T 2k1p_A 8 QCKTCSNVNWAR--------------RSECNMCNTP 29 (33)
T ss_dssp BCSSSCCBCCTT--------------CSBCSSSCCB
T ss_pred ccCCCCCccccc--------------cccccccCCc
Confidence 499999988877 5678888875
No 37
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=78.55 E-value=0.69 Score=36.54 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=23.3
Q ss_pred ceeeecCCCCCcccceeecccc-ccccCCCCcC----------ceeCCCCCceeE
Q 028248 152 SLILKGPCPNCGTENVSFFGTI-LSISSGGTTN----------TINCSNCGTTMV 195 (211)
Q Consensus 152 ~liLkG~CPnCg~Ev~aFfg~i-~~v~s~~~~~----------~~kC~~C~~~L~ 195 (211)
..-.+.-|+|||++...= .+ ..+....... ..+||.||..-.
T Consensus 66 ~~p~~~~C~~CG~~~~~~--~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~ 118 (139)
T 3a43_A 66 EEEAVFKCRNCNYEWKLK--EVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDF 118 (139)
T ss_dssp EECCEEEETTTCCEEEGG--GCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCE
T ss_pred ecCCcEECCCCCCEEecc--cccccccccccccccccccccccCCcCccccCCcc
Confidence 334577899999885421 00 0000111112 678999998843
No 38
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=78.53 E-value=0.83 Score=27.83 Aligned_cols=22 Identities=27% Similarity=0.753 Sum_probs=17.3
Q ss_pred CCCCCcccceeeccccccccCCCCcCceeCCCCCce
Q 028248 158 PCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTT 193 (211)
Q Consensus 158 ~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~ 193 (211)
.||+||.-||+. +..|..|++.
T Consensus 7 ~C~~C~~~Nfa~--------------r~~C~~C~~p 28 (32)
T 2lk0_A 7 LCNKCCLNNFRK--------------RLKCFRCGAD 28 (32)
T ss_dssp ECTTTCCEEETT--------------CCBCTTTCCB
T ss_pred CcCcCcCCcChh--------------cceecCCCCc
Confidence 499999888765 5678888864
No 39
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=78.29 E-value=1.3 Score=30.08 Aligned_cols=30 Identities=27% Similarity=0.691 Sum_probs=21.6
Q ss_pred eecCCCCCcccceeeccccccccCCCCcCceeCCCCCcee
Q 028248 155 LKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTM 194 (211)
Q Consensus 155 LkG~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L 194 (211)
+.--||.||..++ +.. ..++..|..|+-..
T Consensus 17 ~~~fCPkCG~~~~--ma~--------~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 17 KHRFCPRCGPGVF--LAE--------HADRYSCGRCGYTE 46 (55)
T ss_dssp SSCCCTTTTTTCC--CEE--------CSSEEECTTTCCCE
T ss_pred ccccCcCCCCcee--Eec--------cCCEEECCCCCCEE
Confidence 3567999998773 211 23589999999884
No 40
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=78.12 E-value=1.5 Score=28.46 Aligned_cols=19 Identities=21% Similarity=0.705 Sum_probs=15.8
Q ss_pred cCceeCCCCCc-eeEEecCc
Q 028248 182 TNTINCSNCGT-TMVYDSNT 200 (211)
Q Consensus 182 ~~~~kC~~C~~-~L~f~~~~ 200 (211)
.+..+||+|+. .|+|+..+
T Consensus 3 ~~~~~CP~C~~~~l~~d~~~ 22 (50)
T 1pft_A 3 NKQKVCPACESAELIYDPER 22 (50)
T ss_dssp SSCCSCTTTSCCCEEEETTT
T ss_pred CccEeCcCCCCcceEEcCCC
Confidence 45678999999 99999863
No 41
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=77.94 E-value=1 Score=41.87 Aligned_cols=37 Identities=30% Similarity=0.750 Sum_probs=24.3
Q ss_pred ccceeeecCCCCCccccee--------eccccccccCCCCcCceeCCCCCce
Q 028248 150 RESLILKGPCPNCGTENVS--------FFGTILSISSGGTTNTINCSNCGTT 193 (211)
Q Consensus 150 ~d~liLkG~CPnCg~Ev~a--------Ffg~i~~v~s~~~~~~~kC~~C~~~ 193 (211)
+...-+...|||||+.-.. |||.|. -....|+.||-.
T Consensus 214 ~ev~~~~s~Cp~C~~~~~t~~~~~~IP~F~eVi-------ims~~C~~CGyr 258 (404)
T 2qkd_A 214 NEVLQFNTNCPECNAPAQTNMKLVQIPHFKEVI-------IMATNCENCGHR 258 (404)
T ss_dssp CCEEEEEECCTTTCCTTCEEEEEECCTTSCCEE-------EEEEECSSSCCE
T ss_pred cceeeecccCccCCCccEEEEEEEeCCCCCcEE-------EEEEECCCCCCc
Confidence 3445577888888876543 466655 345788888843
No 42
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=77.81 E-value=0.91 Score=33.94 Aligned_cols=35 Identities=20% Similarity=0.629 Sum_probs=20.7
Q ss_pred CCCCCcccce---------eeccccccccCCCCcCceeCCCCCceeE
Q 028248 158 PCPNCGTENV---------SFFGTILSISSGGTTNTINCSNCGTTMV 195 (211)
Q Consensus 158 ~CPnCg~Ev~---------aFfg~i~~v~s~~~~~~~kC~~C~~~L~ 195 (211)
.||.||.+.. .|=|....|. +.+-..|++||..+.
T Consensus 4 ~Cp~Cg~~~~~~~~~~~~~~~kg~~~~v~---~v~~~~C~~CGE~~~ 47 (133)
T 3o9x_A 4 KCPVCHQGEMVSGIKDIPYTFRGRKTVLK---GIHGLYCVHCEESIM 47 (133)
T ss_dssp BCTTTSSSBEEEEEEEEEEEETTEEEEEE---EEEEEEESSSSCEEC
T ss_pred CCCcCCCCceeeceEEEEEEECCEEEEEC---CCceeECCCCCCEee
Confidence 5999998743 2212222221 125678999998763
No 43
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=77.78 E-value=0.85 Score=40.46 Aligned_cols=40 Identities=15% Similarity=0.309 Sum_probs=25.2
Q ss_pred hhccceeeecCCCCCcccceeeccccccccCCCCcCceeCCCCCceeE
Q 028248 148 IVRESLILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMV 195 (211)
Q Consensus 148 ~~~d~liLkG~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L~ 195 (211)
|..|+- ....||+||.......-+ ..+.+.-|..||..++
T Consensus 14 ~~~~~~-~~~~Cp~Cg~~~~~iv~D-------~~~G~~vC~~CG~Vl~ 53 (345)
T 3k7a_M 14 RGPNLN-IVLTCPECKVYPPKIVER-------FSEGDVVCALCGLVLS 53 (345)
T ss_dssp ---CCC-CCCCCSTTCCSCCCCCCC-------SSSCSCCCSSSCCCCC
T ss_pred cCcccc-CCCcCcCCCCCCCceEEE-------CCCCCEecCCCCeEcc
Confidence 444443 566799999974222111 1577899999999884
No 44
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=76.96 E-value=0.92 Score=37.80 Aligned_cols=26 Identities=27% Similarity=0.453 Sum_probs=18.9
Q ss_pred eecCCCCCcccceeeccccccccCCCCcCceeCCCCCce
Q 028248 155 LKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTT 193 (211)
Q Consensus 155 LkG~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~ 193 (211)
-+.-|++||+-.. | + .+ -+||+||.+
T Consensus 170 ~~~~C~~CG~i~~---g-~-------~p--~~CP~C~~~ 195 (202)
T 1yuz_A 170 KFHLCPICGYIHK---G-E-------DF--EKCPICFRP 195 (202)
T ss_dssp CEEECSSSCCEEE---S-S-------CC--SBCTTTCCB
T ss_pred cEEEECCCCCEEc---C-c-------CC--CCCCCCCCC
Confidence 5778999997643 2 1 12 699999975
No 45
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=76.36 E-value=1.9 Score=28.73 Aligned_cols=38 Identities=21% Similarity=0.481 Sum_probs=24.8
Q ss_pred ecCCCCCcccceeeccccccccCCC--CcCceeCCCCCceeE
Q 028248 156 KGPCPNCGTENVSFFGTILSISSGG--TTNTINCSNCGTTMV 195 (211)
Q Consensus 156 kG~CPnCg~Ev~aFfg~i~~v~s~~--~~~~~kC~~C~~~L~ 195 (211)
.-.||.||.+.-.||-. -..|.. .+--..|.+||-.-.
T Consensus 9 ~~~Cp~Cg~~~a~f~q~--Q~RsaDE~mT~Fy~C~~Cg~~w~ 48 (50)
T 1tfi_A 9 LFTCGKCKKKNCTYTQV--QTRSADEPMTTFVVCNECGNRWK 48 (50)
T ss_dssp CSCCSSSCSSCEEEEEE--CSSSSSSCCEEEEEESSSCCEEE
T ss_pred ccCCCCCCCCEEEEEEe--cCcCCCCCceEEEEcCCCCCeEE
Confidence 45899999988888732 223322 233469999987543
No 46
>2f4m_A Peptide N-glycanase; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: d.3.1.4 PDB: 2f4o_A*
Probab=76.00 E-value=2.8 Score=37.37 Aligned_cols=59 Identities=17% Similarity=0.266 Sum_probs=36.5
Q ss_pred HHHHHHHhhhccce--eeecCCCCCcccceeeccc-c--cccc---CCCCcCceeCCCCCceeEEecC
Q 028248 140 LSQSLTKLIVRESL--ILKGPCPNCGTENVSFFGT-I--LSIS---SGGTTNTINCSNCGTTMVYDSN 199 (211)
Q Consensus 140 ~a~~lt~~~~~d~l--iLkG~CPnCg~Ev~aFfg~-i--~~v~---s~~~~~~~kC~~C~~~L~f~~~ 199 (211)
+...|.+|+.+++. .++-||++||.+.... |. . ...+ +....-...|++|+....|-+.
T Consensus 63 ~~~~ll~wFk~~fF~~~~~P~c~~C~~~~~~~-g~~~~~~~~e~~~~a~~vE~y~c~~c~~~~~~pr~ 129 (295)
T 2f4m_A 63 LLLELLHWFKEEFFRWVNNIVCSKCGGETRSR-DEALLPNDDELKWGAKNVENHYCDACQLSNRFPRY 129 (295)
T ss_dssp HHHHHHHHHHHTTCEECSSCCCTTTCCCCEEC-SSCBCCCSHHHHTTCCCEEEEEETTTTEEEEEECC
T ss_pred HHHHHHHHHHhcCCEEeCCCCCcccCCccccc-CCCCCCChhHhhcccchhheeeccccCceeecCCC
Confidence 34555666666653 5788999999887643 32 0 0011 1222345689999998887653
No 47
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=74.95 E-value=3.7 Score=35.24 Aligned_cols=40 Identities=23% Similarity=0.354 Sum_probs=26.8
Q ss_pred HHHHHHHHhhhccceeeecCCCCCcccceeeccccccccCCCCcCceeCCCCCce
Q 028248 139 YLSQSLTKLIVRESLILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTT 193 (211)
Q Consensus 139 ~~a~~lt~~~~~d~liLkG~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~ 193 (211)
.-|.+|.+|..+.. -||.||++...- .+..+..|+.|+..
T Consensus 95 ~~a~~l~~w~~~~~-----fC~~CG~~~~~~----------~~~~~~~C~~C~~~ 134 (269)
T 1vk6_A 95 GRGVQLAEFYRSHK-----YCGYCGHEMYPS----------KTEWAMLCSHCRER 134 (269)
T ss_dssp HHHHHHHHHHHTTS-----BCTTTCCBEEEC----------SSSSCEEESSSSCE
T ss_pred HHHHHHHhhhhcCC-----ccccCCCcCccC----------CCceeeeCCCCCCE
Confidence 34555555544433 599999987642 25677899999874
No 48
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=74.81 E-value=0.73 Score=34.20 Aligned_cols=12 Identities=58% Similarity=1.237 Sum_probs=10.2
Q ss_pred ecCCCCCcccce
Q 028248 156 KGPCPNCGTENV 167 (211)
Q Consensus 156 kG~CPnCg~Ev~ 167 (211)
.|+||.||.++-
T Consensus 47 g~~CPvCgs~l~ 58 (112)
T 1l8d_A 47 KGKCPVCGRELT 58 (112)
T ss_dssp SEECTTTCCEEC
T ss_pred CCCCCCCCCcCC
Confidence 788999998765
No 49
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}
Probab=74.40 E-value=1.4 Score=35.71 Aligned_cols=41 Identities=24% Similarity=0.335 Sum_probs=24.2
Q ss_pred cCCCCCcccceeeccccccccCCCCcCceeCCCCCceeEEecCc
Q 028248 157 GPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYDSNT 200 (211)
Q Consensus 157 G~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L~f~~~~ 200 (211)
-.||+||++......... .+ .......||.||..++.....
T Consensus 79 ~~c~~~~~~~~~~~~~~~-~~--~~~~~~~c~~~g~~~~~~e~~ 119 (166)
T 3ir9_A 79 TKCSVCGYENKWTRRWKP-GE--PAPAAGNCPKCGSSLEVTDVT 119 (166)
T ss_dssp EEESSSSCEEEEEECCCC-----CCCCCCBCTTTCCBEEEEEEE
T ss_pred EECCCCCceeEEEeecCh-hh--cccccccccccCccchhhhHH
Confidence 469999987654421111 11 112244799999998876543
No 50
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=74.13 E-value=1.3 Score=32.83 Aligned_cols=31 Identities=35% Similarity=0.745 Sum_probs=24.2
Q ss_pred eecCCCCCcccceeeccccccccCCCCcCceeCCCCCc
Q 028248 155 LKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGT 192 (211)
Q Consensus 155 LkG~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~ 192 (211)
..+.||-|++..-+| +|.. .++...|+.||.
T Consensus 36 ~~~~CPfh~e~~pSf-----~V~~--~k~~~~Cf~cg~ 66 (103)
T 1d0q_A 36 YFGLCPFHGEKTPSF-----SVSP--EKQIFHCFGCGA 66 (103)
T ss_dssp EEECCSSSCCSSCCE-----EEET--TTTEEEETTTCC
T ss_pred EEEECCCCCCCCCcE-----EEEc--CCCEEEECCCCC
Confidence 468999999888787 3432 467899999995
No 51
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=73.30 E-value=1.4 Score=38.26 Aligned_cols=35 Identities=29% Similarity=0.647 Sum_probs=23.3
Q ss_pred hccceeeec----CCCCCcccceeeccccccccCCCCcCceeCCCCC
Q 028248 149 VRESLILKG----PCPNCGTENVSFFGTILSISSGGTTNTINCSNCG 191 (211)
Q Consensus 149 ~~d~liLkG----~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~ 191 (211)
+++.+-+.| |||.||+++..-. + +.++..=||+|.
T Consensus 234 ~~~~~~VygR~g~pC~~CG~~I~~~~-----~---~gR~t~~CP~CQ 272 (273)
T 3u6p_A 234 FQHHLYVYGRQGNPCKRCGTPIEKTV-----V---AGRGTHYCPRCQ 272 (273)
T ss_dssp ---CCSSTTCTTSBCTTTCCBCEEEE-----E---TTEEEEECTTTC
T ss_pred ccceEEEeCCCcCCCCCCCCeEEEEE-----E---CCCCeEECCCCC
Confidence 444555654 8999999987541 1 147888999996
No 52
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=73.25 E-value=1.5 Score=37.88 Aligned_cols=35 Identities=26% Similarity=0.558 Sum_probs=25.0
Q ss_pred ccceeeec----CCCCCcccceeeccccccccCCCCcCceeCCCCCc
Q 028248 150 RESLILKG----PCPNCGTENVSFFGTILSISSGGTTNTINCSNCGT 192 (211)
Q Consensus 150 ~d~liLkG----~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~ 192 (211)
++.+-++| |||.||+.+..-. + +.++..=||+|..
T Consensus 232 ~~~~~VygR~G~pC~~CG~~I~~~~-----~---~gR~t~~CP~CQ~ 270 (271)
T 2xzf_A 232 QNELQVYGKTGEKCSRCGAEIQKIK-----V---AGRGTHFCPVCQQ 270 (271)
T ss_dssp GGGCSSTTCTTSBCTTTCCBCEEEE-----E---TTEEEEECTTTSC
T ss_pred cceEEEccCCCCCCCCCCCEeeEEE-----E---CCCceEECCCCCC
Confidence 34455664 6999999987551 1 1578889999975
No 53
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=71.82 E-value=1.9 Score=37.23 Aligned_cols=34 Identities=24% Similarity=0.495 Sum_probs=24.1
Q ss_pred cceeee----cCCCCCcccceeeccccccccCCCCcCceeCCCCCc
Q 028248 151 ESLILK----GPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGT 192 (211)
Q Consensus 151 d~liLk----G~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~ 192 (211)
+.+-+. -|||.||+.+..-. + +.++..=||+|..
T Consensus 226 ~~~~VygR~g~pC~~CG~~I~~~~-----~---~gR~t~~CP~CQ~ 263 (266)
T 1ee8_A 226 TRHAVYGREGLPCPACGRPVERRV-----V---AGRGTHFCPTCQG 263 (266)
T ss_dssp GGCSSTTCTTSBCTTTCCBCEEEE-----S---SSCEEEECTTTTT
T ss_pred ceEEEcccCCCCCCCCCCEeeEEE-----E---CCCceEECCCCCC
Confidence 344455 46999999987551 1 2578889999975
No 54
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=71.69 E-value=1.7 Score=37.53 Aligned_cols=33 Identities=33% Similarity=0.657 Sum_probs=23.6
Q ss_pred cceeeec----CCCCCcccceeeccccccccCCCCcCceeCCCCC
Q 028248 151 ESLILKG----PCPNCGTENVSFFGTILSISSGGTTNTINCSNCG 191 (211)
Q Consensus 151 d~liLkG----~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~ 191 (211)
+.+-+.| |||.||+.+..-. + +.++..=||+|.
T Consensus 231 ~~~~VygR~g~pC~~CG~~I~~~~-----~---~gR~t~~CP~CQ 267 (268)
T 1k82_A 231 QELQVYGRKGEPCRVCGTPIVATK-----H---AQRATFYCRQCQ 267 (268)
T ss_dssp GGCSSTTCTTSBCTTTCCBCEEEE-----E---TTEEEEECTTTC
T ss_pred ceEEEcccCCCCCCCCCCEeeEEE-----E---CCCceEECCCCC
Confidence 4445663 6999999987551 1 257888999996
No 55
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=71.50 E-value=2.5 Score=33.72 Aligned_cols=35 Identities=20% Similarity=0.563 Sum_probs=27.3
Q ss_pred eeeecCCCC--Ccccce-eeccccccccCCCCcCceeCCCCCceeEEec
Q 028248 153 LILKGPCPN--CGTENV-SFFGTILSISSGGTTNTINCSNCGTTMVYDS 198 (211)
Q Consensus 153 liLkG~CPn--Cg~Ev~-aFfg~i~~v~s~~~~~~~kC~~C~~~L~f~~ 198 (211)
.-+.-.||+ ||..+| |. -.++.-|.-|+-...|++
T Consensus 115 ~~~~~~c~~~~cg~g~fma~-----------h~~r~~cgkc~~t~~~~~ 152 (152)
T 3u5c_f 115 TKLRRECSNPTCGAGVFLAN-----------HKDRLYCGKCHSVYKVNA 152 (152)
T ss_dssp ECCSCBCCSTTSCSSSBEEE-----------CSSCEEESSSSSCCEECC
T ss_pred EECcCcCCCccCCCceEecc-----------cCCCcccCCCceEEEecC
Confidence 446789999 999887 33 245889999999888864
No 56
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=71.34 E-value=1.1 Score=33.88 Aligned_cols=10 Identities=50% Similarity=1.122 Sum_probs=8.6
Q ss_pred CCCCCcccce
Q 028248 158 PCPNCGTENV 167 (211)
Q Consensus 158 ~CPnCg~Ev~ 167 (211)
.||.||+|.+
T Consensus 53 kCP~CgEEFy 62 (95)
T 2k5c_A 53 KCPVCGEEFY 62 (95)
T ss_dssp ECTTTCCEEE
T ss_pred cCCCccHHHh
Confidence 5999999965
No 57
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=70.93 E-value=2.1 Score=34.54 Aligned_cols=27 Identities=26% Similarity=0.703 Sum_probs=21.4
Q ss_pred cCCCCCcccceeeccccccccCCCCcCceeCCCCCcee
Q 028248 157 GPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTM 194 (211)
Q Consensus 157 G~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L 194 (211)
-+||.|+.|.+=- +....-||-|+-.-
T Consensus 28 P~CP~C~seytYe-----------Dg~l~vCPeC~hEW 54 (138)
T 2akl_A 28 PPCPQCNSEYTYE-----------DGALLVCPECAHEW 54 (138)
T ss_dssp CCCTTTCCCCCEE-----------CSSSEEETTTTEEE
T ss_pred CCCCCCCCcceEe-----------cCCeEECCcccccc
Confidence 7999999996544 46678999998654
No 58
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=70.60 E-value=1.9 Score=44.30 Aligned_cols=37 Identities=41% Similarity=0.732 Sum_probs=28.1
Q ss_pred CCCCcccceeeccccccccCCCCcCceeCCCCCceeEEec
Q 028248 159 CPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYDS 198 (211)
Q Consensus 159 CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L~f~~ 198 (211)
||||.. .-|+ +.-++.|+-+--.-+||+||+.|.=+.
T Consensus 505 c~~c~~--~ef~-~~~~~~~g~dlp~k~cp~cg~~~~~dg 541 (1041)
T 3f2b_A 505 CPNCKH--SEFF-NDGSVGSGFDLPDKNCPRCGTKYKKDG 541 (1041)
T ss_dssp CTTTCC--EEEC-CSSCCSCGGGSCCCBCTTTCCBCEEEC
T ss_pred Cccccc--cccc-cccccccccCCccccCccccccccccC
Confidence 999997 3343 445667777788889999999887665
No 59
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=69.67 E-value=2 Score=36.90 Aligned_cols=26 Identities=23% Similarity=0.599 Sum_probs=19.9
Q ss_pred CCCCCcccceeeccccccccCCCCcCceeCCCCC
Q 028248 158 PCPNCGTENVSFFGTILSISSGGTTNTINCSNCG 191 (211)
Q Consensus 158 ~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~ 191 (211)
|||.||+.+..-. + +.++..=||+|.
T Consensus 236 pC~~CG~~I~~~~-----~---~gR~t~~CP~CQ 261 (262)
T 1k3x_A 236 PCERCGSIIEKTT-----L---SSRPFYWCPGCQ 261 (262)
T ss_dssp BCTTTCCBCEEEE-----E---TTEEEEECTTTC
T ss_pred CCCCCCCEeEEEE-----E---CCCCeEECCCCC
Confidence 7999999987541 1 157888999996
No 60
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=68.58 E-value=2.6 Score=37.56 Aligned_cols=38 Identities=16% Similarity=0.359 Sum_probs=22.0
Q ss_pred hhccceeeecCCCCCcc--cceeeccccccccCCCCcCceeCCCCCceeE
Q 028248 148 IVRESLILKGPCPNCGT--ENVSFFGTILSISSGGTTNTINCSNCGTTMV 195 (211)
Q Consensus 148 ~~~d~liLkG~CPnCg~--Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L~ 195 (211)
|..|+ -.+--||.||. ....+ +. +..+.-|..||..++
T Consensus 14 ~~~~l-~~~~~Cp~C~~~~~~lv~------D~---~~G~~vC~~CGlVl~ 53 (345)
T 4bbr_M 14 RGPNL-NIVLTCPECKVYPPKIVE------RF---SEGDVVCALCGLVLS 53 (345)
T ss_dssp ---------CCCSSCCCSSCCEEE------EG---GGTEEEETTTCBEEE
T ss_pred cCccc-ccCCcCCCCCCCCCceeE------EC---CCCcEEeCCCCCCcc
Confidence 43443 35668999996 33322 11 578999999999886
No 61
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=68.01 E-value=2.1 Score=30.12 Aligned_cols=13 Identities=15% Similarity=0.754 Sum_probs=10.0
Q ss_pred CceeCCCCCceeE
Q 028248 183 NTINCSNCGTTMV 195 (211)
Q Consensus 183 ~~~kC~~C~~~L~ 195 (211)
.-..|++||+..-
T Consensus 35 p~~~C~~CGE~~~ 47 (78)
T 3ga8_A 35 HGLYCVHCEESIM 47 (78)
T ss_dssp EEEEETTTCCEEC
T ss_pred eeEECCCCCCEEE
Confidence 5678999998753
No 62
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=67.98 E-value=2.5 Score=31.22 Aligned_cols=31 Identities=19% Similarity=0.504 Sum_probs=22.8
Q ss_pred ecCCCCCcccceeeccccccccCCCCcCceeCCCCCcee
Q 028248 156 KGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTM 194 (211)
Q Consensus 156 kG~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L 194 (211)
.-.||+||..+..- ..+......|..|+..+
T Consensus 5 ~~~c~~c~~~n~~p--------~~~~~~~~~~~~~~~~~ 35 (148)
T 3p2a_A 5 NTVCTACMATNRLP--------EERIDDGAKCGRCGHSL 35 (148)
T ss_dssp EEECTTTCCEEEEE--------SSCSCSCCBCTTTCCBT
T ss_pred EEECcccccccCCC--------CcccccCCcchhcCCcc
Confidence 44599999987544 33456677899999876
No 63
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=67.17 E-value=2.6 Score=38.04 Aligned_cols=31 Identities=26% Similarity=0.634 Sum_probs=24.5
Q ss_pred eecCCCCCcccceeeccccccccCCCCcCceeCCCCCc
Q 028248 155 LKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGT 192 (211)
Q Consensus 155 LkG~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~ 192 (211)
.+|.||-|++..-+| +|.. ..+...|+.||.
T Consensus 33 ~~~~CPfh~ektpSf-----~V~~--~k~~~~CFgCg~ 63 (407)
T 2au3_A 33 YRTNCPFHPDDTPSF-----YVSP--SKQIFKCFGCGV 63 (407)
T ss_dssp EEECCSSSCCSSCCE-----EEET--TTTEEEETTTCC
T ss_pred EEeeCcCCCCCCCeE-----EEEC--CCCEEEECCCCC
Confidence 579999999988888 3432 456799999985
No 64
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=66.72 E-value=2.7 Score=27.81 Aligned_cols=35 Identities=20% Similarity=0.319 Sum_probs=18.4
Q ss_pred cCCCCCcccceeeccccccccCCCCcCceeCCCCCce
Q 028248 157 GPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTT 193 (211)
Q Consensus 157 G~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~ 193 (211)
=.|++||+..--=.|+-- .=..-+..-.||+||..
T Consensus 5 y~C~vCGyvyd~~~Gd~t--~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 5 YVCNVCGYEYDPAEHDNV--PFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp EEETTTCCEECGGGGTTC--CGGGSCTTCBCTTTCCB
T ss_pred EECCCCCeEEeCCcCCCc--chhhCCCCCcCcCCCCc
Confidence 369999954321112100 00013555699999964
No 65
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=64.83 E-value=2.6 Score=26.31 Aligned_cols=33 Identities=21% Similarity=0.640 Sum_probs=25.4
Q ss_pred CCCCCcccceeeccccccccCCCCcCceeCCCCCceeEEe
Q 028248 158 PCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYD 197 (211)
Q Consensus 158 ~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L~f~ 197 (211)
-||.|+.+-+.+.. + +...-.+|..||..-.++
T Consensus 2 lC~~C~~peT~l~~-----~--~~~~~l~C~aCG~~~~v~ 34 (36)
T 1k81_A 2 ICRECGKPDTKIIK-----E--GRVHLLKCMACGAIRPIR 34 (36)
T ss_dssp CCSSSCSCEEEEEE-----E--TTEEEEEEETTTEEEEEC
T ss_pred CCcCCCCCCcEEEE-----e--CCcEEEEhhcCCCccccc
Confidence 49999999998843 2 256788999999876553
No 66
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=64.57 E-value=2.1 Score=29.99 Aligned_cols=9 Identities=33% Similarity=1.014 Sum_probs=5.2
Q ss_pred eCCCCCcee
Q 028248 186 NCSNCGTTM 194 (211)
Q Consensus 186 kC~~C~~~L 194 (211)
.|++||...
T Consensus 20 ~CP~CG~~T 28 (60)
T 2apo_B 20 ICPKCGEKT 28 (60)
T ss_dssp BCSSSCSBC
T ss_pred cCcCCCCcC
Confidence 366666553
No 67
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=64.04 E-value=2.6 Score=35.21 Aligned_cols=34 Identities=24% Similarity=0.572 Sum_probs=25.1
Q ss_pred eeecCCCCCcccce-eeccccccccCCCCcCceeCCCCCceeEEec
Q 028248 154 ILKGPCPNCGTENV-SFFGTILSISSGGTTNTINCSNCGTTMVYDS 198 (211)
Q Consensus 154 iLkG~CPnCg~Ev~-aFfg~i~~v~s~~~~~~~kC~~C~~~L~f~~ 198 (211)
-+.-.||+||..+| +- -..+..|.-|+....|+.
T Consensus 111 ~~~~~Cp~Cg~g~fma~-----------h~dR~~CGkC~~t~~~~~ 145 (189)
T 2xzm_9 111 LQQKGCPKCGPGIFMAK-----------HYDRHYCGKCHLTLKIDX 145 (189)
T ss_dssp ECSEECSTTCSSCEEEE-----------CSSCEEETTTCCCBCCHH
T ss_pred EccccCCccCCCccccC-----------ccCCCccCCceeEEEeec
Confidence 35678999998765 32 234679999998887764
No 68
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=62.38 E-value=2.6 Score=29.25 Aligned_cols=8 Identities=38% Similarity=1.227 Sum_probs=6.8
Q ss_pred CCCCCccc
Q 028248 158 PCPNCGTE 165 (211)
Q Consensus 158 ~CPnCg~E 165 (211)
.||+||+.
T Consensus 32 ~c~~cG~~ 39 (60)
T 2zjr_Z 32 ECPQCHGK 39 (60)
T ss_dssp ECTTTCCE
T ss_pred ECCCCCCE
Confidence 59999986
No 69
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=61.97 E-value=2.1 Score=29.04 Aligned_cols=31 Identities=26% Similarity=0.605 Sum_probs=23.2
Q ss_pred ecCCCCCcccceeeccccccccCCCCcCceeCCCCCceeEEecCce
Q 028248 156 KGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYDSNTR 201 (211)
Q Consensus 156 kG~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L~f~~~~r 201 (211)
+--||.||..+ .+.-.+|..||.. .++.+..
T Consensus 14 k~iCpkC~a~~--------------~~gaw~CrKCG~~-~lr~k~k 44 (51)
T 3j21_g 14 KYVCLRCGATN--------------PWGAKKCRKCGYK-RLRPKAK 44 (51)
T ss_dssp EEECTTTCCEE--------------CTTCSSCSSSSSC-CCEEECC
T ss_pred CccCCCCCCcC--------------CCCceecCCCCCc-ccccccc
Confidence 44599999871 4667889999998 7776544
No 70
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=61.44 E-value=5.9 Score=30.04 Aligned_cols=36 Identities=28% Similarity=0.618 Sum_probs=22.8
Q ss_pred ecCCCCCcccceeeccccccccCC--CCcCceeCCCCCce
Q 028248 156 KGPCPNCGTENVSFFGTILSISSG--GTTNTINCSNCGTT 193 (211)
Q Consensus 156 kG~CPnCg~Ev~aFfg~i~~v~s~--~~~~~~kC~~C~~~ 193 (211)
.-.||+||..--.||-. -..|. .-+--.+|.+||-.
T Consensus 72 ~~~Cp~C~~~~a~~~q~--q~rsade~mt~fy~C~~C~~~ 109 (113)
T 3h0g_I 72 DKECPRCHQHEAVFYQT--HSRRGDTMMTLIYVCVHCGFA 109 (113)
T ss_dssp CSCCSSSCCSCEEEECC--CCSSCCCCCCCEEEESSSCCC
T ss_pred ccCCCCCCCceEEEEEE--ecccCCCCCeeEEEcCCCCCE
Confidence 36899999887777632 12222 23344789999853
No 71
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=61.08 E-value=5.4 Score=35.29 Aligned_cols=29 Identities=17% Similarity=0.395 Sum_probs=21.2
Q ss_pred CCCCCcccceeeccccccccCCCCcCceeCCCCCc
Q 028248 158 PCPNCGTENVSFFGTILSISSGGTTNTINCSNCGT 192 (211)
Q Consensus 158 ~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~ 192 (211)
|||.||+.+..-- -+...+...=||.|..
T Consensus 253 pC~~CGt~I~~~~------~g~~gRsTyfCp~~~~ 281 (287)
T 3w0f_A 253 NCDQCHSKITVCR------FGENSRMTYFCPHCQK 281 (287)
T ss_dssp BCTTTCCBCEEEC------SSTTCCCEEECTTTSC
T ss_pred CCCCCCCEEEEEE------ecCCCCCEEECCCccc
Confidence 8999999987531 1112488899999975
No 72
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=61.08 E-value=3.1 Score=35.27 Aligned_cols=41 Identities=15% Similarity=0.285 Sum_probs=26.4
Q ss_pred hhhccceeeecCCCCCcccceeeccccccccCCCCcCceeCCCCCceeE
Q 028248 147 LIVRESLILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMV 195 (211)
Q Consensus 147 ~~~~d~liLkG~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L~ 195 (211)
.|.+|+ -.+-.||.||.....+.-+ ..+.+.-|.+||..+.
T Consensus 13 ~~~~~l-n~~~~CPECGs~~t~IV~D-------~erGE~VCsdCGLVLE 53 (197)
T 3k1f_M 13 RRGPNL-NIVLTCPECKVYPPKIVER-------FSEGDVVCALCGLVLS 53 (197)
T ss_dssp CCSSCC-CCCCCCTTTCCSSCCEEEE-------GGGTEEEETTTCBBCC
T ss_pred cccccc-ccCeECcCCCCcCCeEEEe-------CCCCEEEEcCCCCCcC
Confidence 344444 3666899999842212111 1578999999999874
No 73
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=60.92 E-value=3 Score=31.43 Aligned_cols=17 Identities=18% Similarity=0.729 Sum_probs=12.6
Q ss_pred cCceeCCCCCceeEEec
Q 028248 182 TNTINCSNCGTTMVYDS 198 (211)
Q Consensus 182 ~~~~kC~~C~~~L~f~~ 198 (211)
.|.+|||.||.+|..+.
T Consensus 6 ~~~~~~PlCG~~L~W~e 22 (95)
T 2k5c_A 6 HHMAKCPICGSPLKWEE 22 (95)
T ss_dssp --CEECSSSCCEECHHH
T ss_pred cccccCCcCCCccCHHH
Confidence 57899999999987643
No 74
>3c1l_A Putative antioxidant defense protein MLR4105; structural genomics, joint center for structural genomics, J protein structure initiative; 2.00A {Mesorhizobium loti}
Probab=60.19 E-value=11 Score=29.56 Aligned_cols=48 Identities=13% Similarity=0.132 Sum_probs=35.0
Q ss_pred ChHHHHhHHhhhcccCCeeEEeChhhHHHHHHHHhhhcCCCccChHHHHHHHH
Q 028248 2 SNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIMSDEEYDKLKQ 54 (211)
Q Consensus 2 s~eefd~lkeel~weGssv~~l~~~Eq~fLeA~~aY~~G~Pi~sD~efD~Lk~ 54 (211)
|+|+.+.|+. .|.++ ..++.|+.-|+...+...-..-++|+.|++|+.
T Consensus 100 ~~~~i~~l~~--~~~~~---~~~~~e~a~l~~a~~lt~~~~~v~d~~~~~l~~ 147 (188)
T 3c1l_A 100 DPALGEMLVM--NFRAA---DLSPRQTAMLEFAVKLTEEPAKIVEADRAALRK 147 (188)
T ss_dssp CHHHHHHHHH--CGGGG---CCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHH
T ss_pred CHHHHHHHHH--hhhcC---CCCHHHHHHHHHHHHHHhCcCCCCHHHHHHHHH
Confidence 4556565543 58887 368999988888777655444599999999864
No 75
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=59.54 E-value=3.2 Score=29.06 Aligned_cols=10 Identities=30% Similarity=0.813 Sum_probs=5.9
Q ss_pred CCCCCceeEE
Q 028248 187 CSNCGTTMVY 196 (211)
Q Consensus 187 C~~C~~~L~f 196 (211)
|++||....-
T Consensus 20 CP~CG~~t~~ 29 (60)
T 2aus_D 20 CPVCGEKTKV 29 (60)
T ss_dssp CTTTCSBCEE
T ss_pred CcCCCCccCC
Confidence 6666665443
No 76
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=58.74 E-value=4.2 Score=29.94 Aligned_cols=38 Identities=26% Similarity=0.520 Sum_probs=20.6
Q ss_pred ecCCCCCcccceeeccc-cccccCCC----CcCceeCCCCCce
Q 028248 156 KGPCPNCGTENVSFFGT-ILSISSGG----TTNTINCSNCGTT 193 (211)
Q Consensus 156 kG~CPnCg~Ev~aFfg~-i~~v~s~~----~~~~~kC~~C~~~ 193 (211)
+-.|++||+..-.=-|+ ..+|..+. -+..-.||+||..
T Consensus 27 ~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 69 (81)
T 2kn9_A 27 LFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAA 69 (81)
T ss_dssp EEEETTTCCEEETTTCBTTTTBCTTCCTTTSCTTCCCTTTCCC
T ss_pred eEEeCCCCEEEcCCcCCcccCcCCCCChhHCCCCCcCCCCCCC
Confidence 67899999653221111 01122221 2445589999974
No 77
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=58.73 E-value=6.5 Score=28.13 Aligned_cols=28 Identities=18% Similarity=0.449 Sum_probs=19.3
Q ss_pred CCCCcccceeeccccccccCCCCcCceeCCCCCceeEE
Q 028248 159 CPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVY 196 (211)
Q Consensus 159 CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L~f 196 (211)
||+|+.-+..- . ...++.|+.|+...=|
T Consensus 28 CP~C~~~~~~~-------~---~~~~v~C~~C~~~FC~ 55 (86)
T 2ct7_A 28 CAQCSFGFIYE-------R---EQLEATCPQCHQTFCV 55 (86)
T ss_dssp CSSSCCCEECC-------C---SCSCEECTTTCCEECS
T ss_pred CcCCCchheec-------C---CCCceEeCCCCCcccc
Confidence 99999866322 1 2566999999876544
No 78
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=58.32 E-value=6.6 Score=34.89 Aligned_cols=14 Identities=29% Similarity=0.788 Sum_probs=11.2
Q ss_pred eeecCCCCCcccce
Q 028248 154 ILKGPCPNCGTENV 167 (211)
Q Consensus 154 iLkG~CPnCg~Ev~ 167 (211)
--+|-||+||..=.
T Consensus 180 ~~~~~CPvCGs~P~ 193 (309)
T 2fiy_A 180 ESRTLCPACGSPPM 193 (309)
T ss_dssp TTCSSCTTTCCCEE
T ss_pred ccCCCCCCCCCcCc
Confidence 35799999998755
No 79
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=58.28 E-value=5.3 Score=26.83 Aligned_cols=37 Identities=27% Similarity=0.381 Sum_probs=19.2
Q ss_pred cCCCCCcccceeeccc-cccccCCC----CcCceeCCCCCce
Q 028248 157 GPCPNCGTENVSFFGT-ILSISSGG----TTNTINCSNCGTT 193 (211)
Q Consensus 157 G~CPnCg~Ev~aFfg~-i~~v~s~~----~~~~~kC~~C~~~ 193 (211)
-.|++||+.--.=-|+ ..+|..+. -+..-.||+||..
T Consensus 3 ~~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~~ 44 (52)
T 1yk4_A 3 LSCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAP 44 (52)
T ss_dssp EEESSSSCEEETTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB
T ss_pred EEeCCCCeEECCCcCCcccCcCCCCCHhHCCCCCcCCCCCCC
Confidence 4699999653222221 11122221 2444589999974
No 80
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=58.10 E-value=6.2 Score=32.35 Aligned_cols=36 Identities=25% Similarity=0.585 Sum_probs=24.4
Q ss_pred CCCCCcccceeeccccccccCC--CCcCceeCCCCCceeE
Q 028248 158 PCPNCGTENVSFFGTILSISSG--GTTNTINCSNCGTTMV 195 (211)
Q Consensus 158 ~CPnCg~Ev~aFfg~i~~v~s~--~~~~~~kC~~C~~~L~ 195 (211)
.||.||...-.||-. -..|. .-+--+.|.+||-.-.
T Consensus 139 ~Cp~C~~~~a~~~q~--Q~rsaDE~mt~f~~C~~C~~~w~ 176 (178)
T 3po3_S 139 TCGKCKEKKVSYYQL--QTRSAAAPLTTFCTCEACGNRWK 176 (178)
T ss_dssp CCSSSCCSCEECCCC--CCSCTTSCCCCCEEETTTCCEEC
T ss_pred CCCCCCCCceEEEEe--ecccCCCCCcEEEEcCCCCCeec
Confidence 899999988888732 22222 2355678999997644
No 81
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=57.85 E-value=4.7 Score=27.36 Aligned_cols=38 Identities=26% Similarity=0.464 Sum_probs=19.6
Q ss_pred ecCCCCCcccceeeccc-cccccCCC----CcCceeCCCCCce
Q 028248 156 KGPCPNCGTENVSFFGT-ILSISSGG----TTNTINCSNCGTT 193 (211)
Q Consensus 156 kG~CPnCg~Ev~aFfg~-i~~v~s~~----~~~~~kC~~C~~~ 193 (211)
+-.|++||+.--.=-|+ ..+|..+. -+..-.||+||..
T Consensus 3 ~y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cga~ 45 (55)
T 2v3b_B 3 KWQCVVCGFIYDEALGLPEEGIPAGTRWEDIPADWVCPDCGVG 45 (55)
T ss_dssp EEEETTTCCEEETTTCBTTTTBCTTCCGGGSCTTCCCTTTCCC
T ss_pred cEEeCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCCCCCCC
Confidence 34699999653222111 01122221 2444589999974
No 82
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=56.67 E-value=5 Score=29.42 Aligned_cols=21 Identities=29% Similarity=0.574 Sum_probs=17.2
Q ss_pred cCceeCCCCCceeEEecCcee
Q 028248 182 TNTINCSNCGTTMVYDSNTRL 202 (211)
Q Consensus 182 ~~~~kC~~C~~~L~f~~~~r~ 202 (211)
.++.+||+||..+.|+..+=.
T Consensus 25 ~~~y~Cp~CG~~~v~r~atGi 45 (83)
T 1vq8_Z 25 NEDHACPNCGEDRVDRQGTGI 45 (83)
T ss_dssp HSCEECSSSCCEEEEEEETTE
T ss_pred cccCcCCCCCCcceeccCCCe
Confidence 468899999999999976533
No 83
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=55.99 E-value=4.4 Score=30.19 Aligned_cols=39 Identities=28% Similarity=0.564 Sum_probs=20.8
Q ss_pred eecCCCCCcccceeeccc-cccccCCC----CcCceeCCCCCce
Q 028248 155 LKGPCPNCGTENVSFFGT-ILSISSGG----TTNTINCSNCGTT 193 (211)
Q Consensus 155 LkG~CPnCg~Ev~aFfg~-i~~v~s~~----~~~~~kC~~C~~~ 193 (211)
-+-.|++||+..-.=.|+ ..+|..+. -+..-.||+||..
T Consensus 34 ~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 77 (87)
T 1s24_A 34 LKWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGAT 77 (87)
T ss_dssp CEEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCCC
T ss_pred ceEECCCCCeEecCCcCCcccCcCCCCChhHCCCCCCCCCCCCC
Confidence 467899999653322221 11112211 2344589999974
No 84
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=55.32 E-value=7.5 Score=29.84 Aligned_cols=38 Identities=18% Similarity=0.494 Sum_probs=25.2
Q ss_pred ecCCCCCcccceeeccccccccCC--CCcCceeCCCCCceeE
Q 028248 156 KGPCPNCGTENVSFFGTILSISSG--GTTNTINCSNCGTTMV 195 (211)
Q Consensus 156 kG~CPnCg~Ev~aFfg~i~~v~s~--~~~~~~kC~~C~~~L~ 195 (211)
.-.||.||.+--.||-. -..|. ..+--.+|.+||-.-.
T Consensus 72 ~~~Cp~C~~~~a~~~q~--q~rsade~~t~fy~C~~C~~~w~ 111 (122)
T 1twf_I 72 DRECPKCHSRENVFFQS--QQRRKDTSMVLFFVCLSCSHIFT 111 (122)
T ss_dssp CCCCTTTCCCCEEEEEC--SSCCTTCCCCEEEEETTTCCEEE
T ss_pred CCCCCCCCCCEEEEEEe--cCccCCCCceEEEEeCCCCCEec
Confidence 57899999988888732 12222 1334479999997643
No 85
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=55.16 E-value=5.3 Score=28.42 Aligned_cols=38 Identities=24% Similarity=0.468 Sum_probs=19.3
Q ss_pred ecCCCCCcccceeecccc-ccccCCC----CcCceeCCCCCce
Q 028248 156 KGPCPNCGTENVSFFGTI-LSISSGG----TTNTINCSNCGTT 193 (211)
Q Consensus 156 kG~CPnCg~Ev~aFfg~i-~~v~s~~----~~~~~kC~~C~~~ 193 (211)
+-.|++||+.--.=-|+- .+|..+. -+..-.||+|+..
T Consensus 7 ~y~C~vCGyiYd~~~Gdp~~gi~pGT~f~~lPddw~CP~Cga~ 49 (70)
T 1dx8_A 7 KYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSP 49 (70)
T ss_dssp CEEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCCB
T ss_pred eEEeCCCCEEEcCCCCCcccCcCCCCchhhCCCCCcCCCCCCC
Confidence 456999996532111110 1111111 2344589999984
No 86
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=55.12 E-value=7.5 Score=33.28 Aligned_cols=30 Identities=27% Similarity=0.493 Sum_probs=19.6
Q ss_pred CCCCCcccceeeccccccccCCCCcCceeCCCCCce
Q 028248 158 PCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTT 193 (211)
Q Consensus 158 ~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~ 193 (211)
.|+.||.+.+.-. .++.-+.-.+|++|+..
T Consensus 136 ~C~~C~~~~~v~~------~~~~~~~P~~Cp~C~~~ 165 (279)
T 1ltl_A 136 ECRGCMRHHAVTQ------STNMITEPSLCSECGGR 165 (279)
T ss_dssp EETTTCCEEEEEC------SSSSCCCCSCCTTTCCC
T ss_pred EcCCCCCEEEEEe------cCCcccCCCcCCCCCCC
Confidence 7999998764332 22222333589999986
No 87
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=54.92 E-value=5.5 Score=25.98 Aligned_cols=22 Identities=36% Similarity=0.999 Sum_probs=18.3
Q ss_pred CCC--CCcccceeeccccccccCCCCcCceeCCCCCce
Q 028248 158 PCP--NCGTENVSFFGTILSISSGGTTNTINCSNCGTT 193 (211)
Q Consensus 158 ~CP--nCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~ 193 (211)
.|| .||.-||+. +..|..|+++
T Consensus 16 ~C~~~~C~~~Nfa~--------------R~~C~~C~~p 39 (45)
T 1n0z_A 16 ICPDKKCGNVNFAR--------------RTSCDRCGRE 39 (45)
T ss_dssp BCSSTTTCCBCCSS--------------CSBCSSSCCB
T ss_pred CCCCCCCCCEEccc--------------cccccccCCc
Confidence 599 799999877 5689999886
No 88
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=54.39 E-value=7.4 Score=26.09 Aligned_cols=38 Identities=26% Similarity=0.465 Sum_probs=19.9
Q ss_pred ecCCCCCcccceeecccc-ccccCCC----CcCceeCCCCCce
Q 028248 156 KGPCPNCGTENVSFFGTI-LSISSGG----TTNTINCSNCGTT 193 (211)
Q Consensus 156 kG~CPnCg~Ev~aFfg~i-~~v~s~~----~~~~~kC~~C~~~ 193 (211)
+-.|++||+.---=-|+- .+|+.+. -+..-.||+||..
T Consensus 3 ~y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~~ 45 (52)
T 1e8j_A 3 IYVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGAS 45 (52)
T ss_dssp CEECSSSCCCCCTTTCCTTTTCCSSCCTTSSCTTCCCSSSCCC
T ss_pred cEEeCCCCeEEcCCcCCcccCcCCCCchHHCCCCCcCCCCCCc
Confidence 346999996532221220 1112221 2455589999974
No 89
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=53.56 E-value=7.2 Score=30.06 Aligned_cols=43 Identities=19% Similarity=0.304 Sum_probs=28.9
Q ss_pred HHHHHHHHhhhccceeeecCCCCCcccceeeccccccccCCCCcCceeCCCCCce
Q 028248 139 YLSQSLTKLIVRESLILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTT 193 (211)
Q Consensus 139 ~~a~~lt~~~~~d~liLkG~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~ 193 (211)
-+++++.+-. +.+++..-.|-+||.++ .. .-.-..+||.|++.
T Consensus 51 HIaksl~r~g-~~L~v~p~~C~~CG~~F----~~-------~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 51 VISKIAKREG-MVLLIKPAQCRKCGFVF----KA-------EINIPSRCPKCKSE 93 (105)
T ss_dssp HHHHHHTTTT-EEEEECCCBBTTTCCBC----CC-------CSSCCSSCSSSCCC
T ss_pred HHHHHHhcCC-cEEEEECcChhhCcCee----cc-------cCCCCCCCcCCCCC
Confidence 5666665433 24677788899999984 11 12445899999975
No 90
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=53.47 E-value=8.9 Score=29.04 Aligned_cols=35 Identities=14% Similarity=0.291 Sum_probs=23.0
Q ss_pred CCCCCcccceeeccccccccCCCCcCceeCCCCCceeEEec
Q 028248 158 PCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYDS 198 (211)
Q Consensus 158 ~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L~f~~ 198 (211)
-||+||.-.+-= ...+...++..|.+|+-.-..+.
T Consensus 6 FCp~Cgn~L~~~------~~~~~~~~~~~C~~C~y~~~~~~ 40 (113)
T 3h0g_I 6 YCIECNNMLYPR------EDKVDRVLRLACRNCDYSEIAAT 40 (113)
T ss_dssp CCSSSCCCCEEC------CCTTTCCCCEECSSSCCEECCSC
T ss_pred eCcCCCCEeeEc------ccCCCCeeEEECCCCCCeEEcCC
Confidence 499999765432 11123577899999998655443
No 91
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=52.83 E-value=6.6 Score=31.33 Aligned_cols=33 Identities=18% Similarity=0.372 Sum_probs=20.8
Q ss_pred cCCCCCcccceeeccccccccCCCCcCceeCCCCCceeEE
Q 028248 157 GPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVY 196 (211)
Q Consensus 157 G~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L~f 196 (211)
=-||.|+.+-+.+... +.....+|..||..-.+
T Consensus 104 VlC~~C~sPdT~l~k~-------~r~~~l~C~ACGa~~~V 136 (139)
T 3cw2_K 104 VECSTCKSLDTILKKE-------KKSWYIVCLACGAQTPV 136 (139)
T ss_dssp SSCCSSSSSCCCSCSS-------CSTTTSSCCC-------
T ss_pred eECCCCCCcCcEEEEe-------CCeEEEEecCCCCCCcc
Confidence 4699999999988421 35688999999986544
No 92
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=52.70 E-value=6.1 Score=27.39 Aligned_cols=20 Identities=20% Similarity=0.429 Sum_probs=12.7
Q ss_pred CCCCCcccceeecccccccc
Q 028248 158 PCPNCGTENVSFFGTILSIS 177 (211)
Q Consensus 158 ~CPnCg~Ev~aFfg~i~~v~ 177 (211)
-|||||.....-|.++..+-
T Consensus 15 ~CpnC~~~tt~~~~G~v~i~ 34 (59)
T 3lpe_B 15 ICPICHSPTSENWIGLLIVI 34 (59)
T ss_dssp BCTTTCCBEESCEECEEEES
T ss_pred CCCCCCCCccCCEeeEEEEe
Confidence 49999977565544444443
No 93
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1
Probab=52.67 E-value=6.2 Score=33.25 Aligned_cols=36 Identities=19% Similarity=0.414 Sum_probs=24.6
Q ss_pred hccceeeecCCCCCcccceeeccccccccCCCCcCceeCCCCCce
Q 028248 149 VRESLILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTT 193 (211)
Q Consensus 149 ~~d~liLkG~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~ 193 (211)
....+ ---+|+.||.+..+-..+ ..+..+|+-|.-+
T Consensus 128 ~s~~L-~l~~C~~Cgg~fv~~~~~--------~~~~f~Cp~C~~p 163 (192)
T 2avu_E 128 ESGLL-QLSSCNCCGGNFITHAHQ--------PVGSFACSLCQPP 163 (192)
T ss_dssp HTTSE-EEEECTTTCCEEEEESSC--------CSSCCCCTTC---
T ss_pred ccCce-eeCcCCCCCCCeeCccCC--------CCCCCcCCCCCCc
Confidence 33334 567899999998776433 5789999999933
No 94
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.94 E-value=5.3 Score=32.62 Aligned_cols=40 Identities=23% Similarity=0.526 Sum_probs=30.6
Q ss_pred CCCCCcccceeeccccccccCCCCcCceeCCCCCceeEEecCcee
Q 028248 158 PCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYDSNTRL 202 (211)
Q Consensus 158 ~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L~f~~~~r~ 202 (211)
-||.|+.+-+.+..+ ..+.....+|..||..-.++..+.+
T Consensus 105 lC~~C~sPdT~L~~~-----~~~r~~~l~C~ACGa~~~V~~~~Kl 144 (157)
T 2e9h_A 105 LCPECENPETDLHVN-----PKKQTIGNSCKACGYRGMLDTHHKL 144 (157)
T ss_dssp SCTTTCCSCCEEEEE-----TTTTEEEEECSSSCCEEECCCCSSH
T ss_pred ECCCCCCCccEEEEe-----cCCCEEEEEccCCCCCCcccchhhh
Confidence 599999999998531 1235678999999999998875443
No 95
>2pfx_A Uncharacterized peroxidase-related protein; YP_614459.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE PG4; 1.70A {Silicibacter SP} SCOP: a.152.1.3
Probab=51.67 E-value=15 Score=28.95 Aligned_cols=48 Identities=8% Similarity=0.113 Sum_probs=34.1
Q ss_pred ChHHHHhHHhhhcccCCeeEEeChhhHHHHHHHHhhhcCCCccChHHHHHHHH
Q 028248 2 SNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIMSDEEYDKLKQ 54 (211)
Q Consensus 2 s~eefd~lkeel~weGssv~~l~~~Eq~fLeA~~aY~~G~Pi~sD~efD~Lk~ 54 (211)
|+|+-+.|+. .|.++ ..++.|+.-|+...+......-++|+.|++|+.
T Consensus 103 ~~~~i~~l~~--~~~~~---~~~~~e~a~l~~a~~lt~~~~~v~d~~~~~l~~ 150 (191)
T 2pfx_A 103 DPQLGEMLVM--NYRVA---PLDARQRVMLDFAAKMTRASAEIEEADREVLRS 150 (191)
T ss_dssp CHHHHHHHHH--CGGGS---CCCHHHHHHHHHHHHHHHHGGGCCHHHHHHHHH
T ss_pred CHHHHHHHHH--hhhcC---CCCHHHHHHHHHHHHHHhCcCCCCHHHHHHHHH
Confidence 4556566553 58887 478999988887776554333599999999864
No 96
>2oyo_A Uncharacterized peroxidase-related protein; YP_604910.1, uncharacterised peroxidase-related, uncharacter peroxidase-related; 1.51A {Deinococcus geothermalis} SCOP: a.152.1.3
Probab=49.62 E-value=20 Score=28.44 Aligned_cols=49 Identities=12% Similarity=0.199 Sum_probs=34.7
Q ss_pred ChHHHHhHHhhhcccCCeeEEeChhhHHHHHHHHhhhcCCCccChHHHHHHHHH
Q 028248 2 SNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIMSDEEYDKLKQK 55 (211)
Q Consensus 2 s~eefd~lkeel~weGssv~~l~~~Eq~fLeA~~aY~~G~Pi~sD~efD~Lk~~ 55 (211)
|+|+-+.++. .|.++ ..++.|+.-|+...+......-++|+.|++|+..
T Consensus 108 ~~~~i~~l~~--~~~~~---~~~~~e~a~l~~a~~lt~~~~~v~d~~~~~l~~~ 156 (196)
T 2oyo_A 108 DPQKADAVAV--NWRHA---DLTEREQALAAYAEKLTRHPAEVTAADLEPLRAV 156 (196)
T ss_dssp CHHHHHHHHH--CGGGS---CCCHHHHHHHHHHHHHHHCGGGCCGGGGHHHHHT
T ss_pred CHHHHHHHHH--hhhcC---CCCHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHc
Confidence 4455555543 58887 3689999888887776654445999999998753
No 97
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=49.44 E-value=7.1 Score=30.40 Aligned_cols=42 Identities=17% Similarity=0.264 Sum_probs=27.9
Q ss_pred hccceeeecCCCCCcccceeeccccccccCCCCcCceeCCCCCceeEEe
Q 028248 149 VRESLILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYD 197 (211)
Q Consensus 149 ~~d~liLkG~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L~f~ 197 (211)
..+.-...-+|| ||.. |.+....+. .+ ..+.|++|...+.+-
T Consensus 105 ~e~~~~f~~~Cr-CG~~-f~i~~~~l~--~~---~~v~C~sCSl~~~v~ 146 (155)
T 2l6l_A 105 NEGDHSFYLSCR-CGGK-YSVSKDEAE--EV---SLISCDTCSLIIELL 146 (155)
T ss_dssp ETTTTEEEEECS-SSCE-EEEETTHHH--HC---CEEECSSSSCEEEEE
T ss_pred ccCCcEEEEcCC-CCCe-EEecHHHhC--CC---CEEECCCCceEEEEE
Confidence 333445678999 9965 667655442 11 579999999877653
No 98
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=49.30 E-value=5 Score=25.78 Aligned_cols=40 Identities=23% Similarity=0.430 Sum_probs=23.7
Q ss_pred CCCCCcccceeeccccccccCCCCcCceeCCCCCceeEEecCc
Q 028248 158 PCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYDSNT 200 (211)
Q Consensus 158 ~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L~f~~~~ 200 (211)
.||.||.....- .. +. ..-......+|+.||....-....
T Consensus 16 ~C~~C~k~F~~~-~~-l~-~~H~~~k~~~C~~C~k~f~~~~~~ 55 (62)
T 1vd4_A 16 KCPVCSSTFTDL-EA-NQ-LFDPMTGTFRCTFCHTEVEEDESA 55 (62)
T ss_dssp ECSSSCCEEEHH-HH-HH-HEETTTTEEBCSSSCCBCEECTTC
T ss_pred cCCCCCchhccH-HH-hH-hhcCCCCCEECCCCCCccccCccc
Confidence 599999865432 11 10 111123458999999987766543
No 99
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=49.23 E-value=9.6 Score=33.57 Aligned_cols=38 Identities=24% Similarity=0.553 Sum_probs=25.5
Q ss_pred cCCCCCcccceeeccccccccCC--CCcCceeCCCCCceeEE
Q 028248 157 GPCPNCGTENVSFFGTILSISSG--GTTNTINCSNCGTTMVY 196 (211)
Q Consensus 157 G~CPnCg~Ev~aFfg~i~~v~s~--~~~~~~kC~~C~~~L~f 196 (211)
-.||.||.....||-- -..|. ..+.-+.|.+||-.-.|
T Consensus 269 ~~C~~C~~~~~~~~q~--Q~rsaDe~~t~f~~C~~Cg~~w~f 308 (309)
T 1pqv_S 269 FTCGKCKEKKVSYYQL--QTRSADEPLTTFCTCEACGNRWKF 308 (309)
T ss_pred ccCCCCCCCeeEEEEe--ecccCCCCCcEEEEeCCCCCceec
Confidence 4799999988888732 11222 23456899999976554
No 100
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=49.02 E-value=7.1 Score=31.51 Aligned_cols=35 Identities=20% Similarity=0.584 Sum_probs=27.0
Q ss_pred CCCCCcccceeeccccccccCCCCcCceeCCCCCceeEEecC
Q 028248 158 PCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYDSN 199 (211)
Q Consensus 158 ~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L~f~~~ 199 (211)
-||.|+.+-+.+... +.....+|..||..-.++..
T Consensus 106 lC~~C~sPdT~L~k~-------~r~~~l~C~ACGa~~~V~~~ 140 (148)
T 2d74_B 106 ICPVCGSPDTKIIKR-------DRFHFLKCEACGAETPIQHL 140 (148)
T ss_dssp SCSSSCCTTCCCCBS-------SSSBCCCCSSSCCCCCCCC-
T ss_pred ECCCCCCcCcEEEEe-------CCEEEEEecCCCCCccccch
Confidence 599999999988421 25788999999987666553
No 101
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=47.60 E-value=5.2 Score=31.93 Aligned_cols=30 Identities=20% Similarity=0.681 Sum_probs=23.9
Q ss_pred CCCCCcccceeeccccccccCCCCcCceeCCCCCcee
Q 028248 158 PCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTM 194 (211)
Q Consensus 158 ~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L 194 (211)
-||.|+.+-+.+... +.....+|..||..-
T Consensus 104 lC~~C~sPdT~l~k~-------~r~~~l~C~ACGa~~ 133 (138)
T 1nee_A 104 ICHECNRPDTRIIRE-------GRISLLKCEACGAKA 133 (138)
T ss_dssp HHTCCSSCSSCCEEE-------TTTTEEECSTTSCCC
T ss_pred ECCCCCCcCcEEEEc-------CCeEEEEccCCCCCc
Confidence 499999999988432 256889999999754
No 102
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=47.50 E-value=6.8 Score=33.13 Aligned_cols=40 Identities=20% Similarity=0.516 Sum_probs=29.7
Q ss_pred eecCCCCCcccce-eeccccccccCCCCcCceeCCCCCceeEEecC
Q 028248 155 LKGPCPNCGTENV-SFFGTILSISSGGTTNTINCSNCGTTMVYDSN 199 (211)
Q Consensus 155 LkG~CPnCg~Ev~-aFfg~i~~v~s~~~~~~~kC~~C~~~L~f~~~ 199 (211)
-.|.|-.|...+. +.+-.|. . ...-+.||+||+.|.+...
T Consensus 197 ~~~~C~GC~~~lppq~~~~i~---~--~~~Iv~Cp~CgRIL~~~~~ 237 (256)
T 3na7_A 197 KKQACGGCFIRLNDKIYTEVL---T--SGDMITCPYCGRILYAEGA 237 (256)
T ss_dssp BTTBCTTTCCBCCHHHHHHHH---H--SSSCEECTTTCCEEECSCC
T ss_pred eCCccCCCCeeeCHHHHHHHH---C--CCCEEECCCCCeeEEeCcc
Confidence 3578999999987 5555544 2 2345899999999988764
No 103
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=47.18 E-value=17 Score=25.51 Aligned_cols=32 Identities=16% Similarity=0.277 Sum_probs=22.7
Q ss_pred CCCCCcccceeeccccccccCCCCcCceeCCCCCceeEEecC
Q 028248 158 PCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYDSN 199 (211)
Q Consensus 158 ~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L~f~~~ 199 (211)
.||.|..+..-- .......|++|+..--.+..
T Consensus 10 ~CP~ck~~L~~~----------~~~~~LiC~~cg~~YPI~dG 41 (68)
T 2hf1_A 10 VCPLCKGPLVFD----------KSKDELICKGDRLAFPIKDG 41 (68)
T ss_dssp BCTTTCCBCEEE----------TTTTEEEETTTTEEEEEETT
T ss_pred ECCCCCCcCeEe----------CCCCEEEcCCCCcEecCCCC
Confidence 799999865432 13577899999877666653
No 104
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=47.11 E-value=17 Score=25.67 Aligned_cols=32 Identities=13% Similarity=0.218 Sum_probs=22.9
Q ss_pred CCCCCcccceeeccccccccCCCCcCceeCCCCCceeEEecC
Q 028248 158 PCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYDSN 199 (211)
Q Consensus 158 ~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L~f~~~ 199 (211)
.||.|+.+..-- .......|++|+..--.+..
T Consensus 10 ~CP~ck~~L~~~----------~~~~~LiC~~cg~~YPI~dG 41 (70)
T 2js4_A 10 VCPVCKGRLEFQ----------RAQAELVCNADRLAFPVRDG 41 (70)
T ss_dssp BCTTTCCBEEEE----------TTTTEEEETTTTEEEEEETT
T ss_pred ECCCCCCcCEEe----------CCCCEEEcCCCCceecCCCC
Confidence 699999976532 13567899999987766653
No 105
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=45.35 E-value=7.3 Score=36.24 Aligned_cols=11 Identities=45% Similarity=1.301 Sum_probs=8.9
Q ss_pred eecCCCCCccc
Q 028248 155 LKGPCPNCGTE 165 (211)
Q Consensus 155 LkG~CPnCg~E 165 (211)
+.|.||.||.+
T Consensus 154 v~g~cp~c~~~ 164 (560)
T 3h99_A 154 VKGTCPKCKSP 164 (560)
T ss_dssp EEEECTTTCCS
T ss_pred cCCCCCCCCCc
Confidence 47899999864
No 106
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=44.87 E-value=20 Score=25.24 Aligned_cols=32 Identities=6% Similarity=0.032 Sum_probs=22.7
Q ss_pred CCCCCcccceeeccccccccCCCCcCceeCCCCCceeEEecC
Q 028248 158 PCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYDSN 199 (211)
Q Consensus 158 ~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L~f~~~ 199 (211)
.||.|..+..-- ....+..|++|+..--.+..
T Consensus 10 ~CP~ck~~L~~~----------~~~~~LiC~~cg~~YPI~dG 41 (68)
T 2jr6_A 10 VCPVTKGRLEYH----------QDKQELWSRQAKLAYPIKDG 41 (68)
T ss_dssp BCSSSCCBCEEE----------TTTTEEEETTTTEEEEEETT
T ss_pred ECCCCCCcCeEe----------CCCCEEEcCCCCcEecCCCC
Confidence 699999765422 13577899999887766654
No 107
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=44.77 E-value=20 Score=25.30 Aligned_cols=32 Identities=13% Similarity=0.228 Sum_probs=22.6
Q ss_pred CCCCCcccceeeccccccccCCCCcCceeCCCCCceeEEecC
Q 028248 158 PCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYDSN 199 (211)
Q Consensus 158 ~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L~f~~~ 199 (211)
.||.|+.+..-- ....+..|++|+..--.+..
T Consensus 10 ~CP~ck~~L~~~----------~~~~~LiC~~cg~~YPI~dG 41 (69)
T 2pk7_A 10 ACPICKGPLKLS----------ADKTELISKGAGLAYPIRDG 41 (69)
T ss_dssp CCTTTCCCCEEC----------TTSSEEEETTTTEEEEEETT
T ss_pred eCCCCCCcCeEe----------CCCCEEEcCCCCcEecCcCC
Confidence 699999775421 13577899999977666643
No 108
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=44.52 E-value=9.9 Score=23.34 Aligned_cols=38 Identities=13% Similarity=0.191 Sum_probs=20.0
Q ss_pred CCCCCcccceeeccccccccCCCCcCceeCCCCCceeE
Q 028248 158 PCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMV 195 (211)
Q Consensus 158 ~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L~ 195 (211)
.|+.|+.....--.-..-...-......+|+.|+....
T Consensus 4 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 41 (60)
T 2adr_A 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFT 41 (60)
T ss_dssp CCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEES
T ss_pred cCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccC
Confidence 58999876543211011111112234578999997543
No 109
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=44.00 E-value=5.3 Score=33.06 Aligned_cols=40 Identities=23% Similarity=0.526 Sum_probs=30.2
Q ss_pred CCCCCcccceeeccccccccCCCCcCceeCCCCCceeEEecCcee
Q 028248 158 PCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYDSNTRL 202 (211)
Q Consensus 158 ~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L~f~~~~r~ 202 (211)
-||.|+.+-+.+..+ +.+.....+|..||..-.++..+.+
T Consensus 98 lC~~C~sPdT~L~k~-----~~~r~~~l~C~ACGa~~~V~~~~kl 137 (170)
T 2g2k_A 98 LCPECENPETDLHVN-----PKKQTIGNSCKACGYRGMLDTHHKL 137 (170)
T ss_dssp SCTTTSSSCEEEEEE-----TTTTEEEEEETTTCCCCCSCSSSSH
T ss_pred ECCCCCCCccEEEEe-----cCCCEEEEEccccCCccccccccce
Confidence 599999999998531 1235677999999998888765443
No 110
>2prr_A Alkylhydroperoxidase AHPD core: uncharacterized P related protein; YP_296737.1, carboxymuconolactone decarboxylase family; HET: PGE; 2.15A {Ralstonia eutropha} SCOP: a.152.1.3
Probab=43.88 E-value=17 Score=28.78 Aligned_cols=48 Identities=6% Similarity=0.193 Sum_probs=33.5
Q ss_pred ChHHHHhHHhhhcccCCeeEEeChhhHHHHHHHHhhhcCCCccChHHHHHHHH
Q 028248 2 SNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIMSDEEYDKLKQ 54 (211)
Q Consensus 2 s~eefd~lkeel~weGssv~~l~~~Eq~fLeA~~aY~~G~Pi~sD~efD~Lk~ 54 (211)
|+|+.+.|.. .|.++ ..++.|+.-|+...+......-++|+.|++|+.
T Consensus 104 ~~~~i~~l~~--~~~~~---~~~~~era~l~~a~~lt~~~~~v~d~~~~~l~~ 151 (197)
T 2prr_A 104 KPLVADQVAV--NYLKA---DIPPRQRAMLDFALKVCKASHEVNEADFEALRE 151 (197)
T ss_dssp CTTHHHHHHH--HGGGS---SCCHHHHHHHHHHHHHHHHGGGCCHHHHHHHHT
T ss_pred CHHHHHHHHH--hhhcC---CCCHHHHHHHHHHHHHHhCcCCCCHHHHHHHHH
Confidence 4555555543 48887 368999988888777554333599999999874
No 111
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=43.42 E-value=7.3 Score=23.63 Aligned_cols=38 Identities=16% Similarity=0.316 Sum_probs=19.4
Q ss_pred CCCCCcccceeeccccccccCCCCcCceeCCCCCceeE
Q 028248 158 PCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMV 195 (211)
Q Consensus 158 ~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L~ 195 (211)
.|+.||.....--.-..-...-......+|+.|+....
T Consensus 3 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 40 (57)
T 1bbo_A 3 ICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFK 40 (57)
T ss_dssp BCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEES
T ss_pred cCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhc
Confidence 58999876543210000011111233478999997643
No 112
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=42.55 E-value=12 Score=30.64 Aligned_cols=33 Identities=15% Similarity=0.358 Sum_probs=25.2
Q ss_pred hcc-ceeeecCCCCCcccceeeccccccccCCCCcCceeCCCCCce
Q 028248 149 VRE-SLILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTT 193 (211)
Q Consensus 149 ~~d-~liLkG~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~ 193 (211)
.+| +. ..-.||+|..-|..- ......|+.|++.
T Consensus 35 k~d~~~-~Y~ACp~CnKKV~~~-----------~~g~~~CekC~~~ 68 (172)
T 3u50_C 35 QMKNKL-YYYRCTCQGKSVLKY-----------HGDSFFCESCQQF 68 (172)
T ss_dssp CCSSCC-EEEECTTSCCCEEEE-----------TTTEEEETTTTEE
T ss_pred cCCCcE-EehhchhhCCEeeeC-----------CCCeEECCCCCCC
Confidence 345 44 788999999988743 3467899999997
No 113
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=42.50 E-value=9 Score=23.56 Aligned_cols=12 Identities=25% Similarity=0.575 Sum_probs=8.8
Q ss_pred CCCCCcccceee
Q 028248 158 PCPNCGTENVSF 169 (211)
Q Consensus 158 ~CPnCg~Ev~aF 169 (211)
-|+.||..+...
T Consensus 8 ~C~~CGnivev~ 19 (36)
T 1dxg_A 8 KCELCGQVVKVL 19 (36)
T ss_dssp ECTTTCCEEEEE
T ss_pred EcCCCCcEEEEE
Confidence 378888777776
No 114
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=41.86 E-value=15 Score=26.45 Aligned_cols=35 Identities=20% Similarity=0.369 Sum_probs=22.9
Q ss_pred cCCCCCcccceeeccccccccCCCCcCceeCCCCCceeE
Q 028248 157 GPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMV 195 (211)
Q Consensus 157 G~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L~ 195 (211)
..||.|...+..- .+..+ ..+....+|+.|-..+.
T Consensus 49 ~~CP~Cr~~~~~~--~l~~l--~i~~~~~~C~iC~~~~~ 83 (133)
T 4ap4_A 49 NTCPTCRKKINHK--RYHPI--YIGSGTVSCPICMDGYS 83 (133)
T ss_dssp SBCTTTCCBCTTT--CEEEC--BCSSSSCBCTTTCCBHH
T ss_pred CCCCCCCCcCccc--ccccc--ccCCCCCCCCCCCCccc
Confidence 3899999988632 11111 12467788999987754
No 115
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=41.47 E-value=15 Score=32.68 Aligned_cols=10 Identities=20% Similarity=0.730 Sum_probs=6.5
Q ss_pred eCCCCCceeE
Q 028248 186 NCSNCGTTMV 195 (211)
Q Consensus 186 kC~~C~~~L~ 195 (211)
-|..|++-++
T Consensus 255 ~C~~C~~YlK 264 (309)
T 2fiy_A 255 TCPSCQGYLK 264 (309)
T ss_dssp EETTTTEEEE
T ss_pred EcccccchHh
Confidence 4777776554
No 116
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.00 E-value=17 Score=24.48 Aligned_cols=35 Identities=17% Similarity=0.432 Sum_probs=22.2
Q ss_pred cCCCCCcccceeeccccccccCCCCcCc--eeCCCCCceeE
Q 028248 157 GPCPNCGTENVSFFGTILSISSGGTTNT--INCSNCGTTMV 195 (211)
Q Consensus 157 G~CPnCg~Ev~aFfg~i~~v~s~~~~~~--~kC~~C~~~L~ 195 (211)
-.|+.|+..+..- ... ..+..=|. .+|..|+..|.
T Consensus 6 ~~C~~C~~~I~~~---~v~-a~~~~wH~~CF~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITGR---VLE-AGEKHYHPSCALCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSSC---CBC-CSSCCBCTTTSCCSSSCCCCC
T ss_pred CCcccCCCEecCe---eEE-eCCCCCCCCcCEeCCCCCCCC
Confidence 3699999999852 221 22233333 57899988875
No 117
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=39.77 E-value=14 Score=22.10 Aligned_cols=12 Identities=17% Similarity=0.576 Sum_probs=8.9
Q ss_pred CceeCCCCCcee
Q 028248 183 NTINCSNCGTTM 194 (211)
Q Consensus 183 ~~~kC~~C~~~L 194 (211)
.+..|++|+.++
T Consensus 2 ~k~~CpvCk~q~ 13 (28)
T 2jvx_A 2 SDFCCPKCQYQA 13 (28)
T ss_dssp CCEECTTSSCEE
T ss_pred CcccCccccccC
Confidence 357888888765
No 118
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=39.22 E-value=9.9 Score=25.62 Aligned_cols=13 Identities=31% Similarity=0.856 Sum_probs=10.7
Q ss_pred CCCCCcccceeec
Q 028248 158 PCPNCGTENVSFF 170 (211)
Q Consensus 158 ~CPnCg~Ev~aFf 170 (211)
-||.||..++.=+
T Consensus 25 rCpyCGyrii~Kv 37 (48)
T 4ayb_P 25 RCPYCGYKIIFMV 37 (48)
T ss_dssp CCTTTCCSCEECC
T ss_pred ccCccCcEEEEEe
Confidence 6999999987654
No 119
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=39.06 E-value=3.6 Score=35.99 Aligned_cols=38 Identities=24% Similarity=0.459 Sum_probs=25.9
Q ss_pred ecCCCCCcccceeeccccccccCCCCcCceeCCCCCceeEEecCcee
Q 028248 156 KGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYDSNTRL 202 (211)
Q Consensus 156 kG~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L~f~~~~r~ 202 (211)
--.||+|+++++.= .+ ..+...||.|+....++...|.
T Consensus 30 ~~kc~~~~~~~y~~---~l------~~~~~v~p~~~~~~r~~arerI 67 (285)
T 2f9i_B 30 MTKCPKCKKIMYTK---EL------AENLNVCFNCDHHIALTAYKRI 67 (285)
T ss_dssp EEECTTTCCEEEHH---HH------HHTTTBCTTTCCBCCCCHHHHH
T ss_pred HHhhHhhCCccchh---hh------HHhcCcCCCCCCCCCCCHHHHH
Confidence 34599999988762 11 3567789999986666554443
No 120
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=38.91 E-value=28 Score=24.43 Aligned_cols=32 Identities=9% Similarity=0.102 Sum_probs=22.9
Q ss_pred CCCCCcccceeeccccccccCCCCcCceeCCCCCceeEEecC
Q 028248 158 PCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYDSN 199 (211)
Q Consensus 158 ~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L~f~~~ 199 (211)
.||.|..+..-- ....+..|+.|+..--.+..
T Consensus 12 ~CP~ck~~L~~~----------~~~g~LvC~~c~~~YPI~dG 43 (67)
T 2jny_A 12 ACPKDKGPLRYL----------ESEQLLVNERLNLAYRIDDG 43 (67)
T ss_dssp BCTTTCCBCEEE----------TTTTEEEETTTTEEEEEETT
T ss_pred CCCCCCCcCeEe----------CCCCEEEcCCCCccccCCCC
Confidence 699999875432 13567899999877766653
No 121
>3lns_A Benzaldehyde dehydrogenase; oxidoreductase, NADP+, class 3 aldehyde dehyd adduct, covalent catalysis, mandelate racemase pathway; HET: ZBZ NAP; 2.50A {Pseudomonas putida} PDB: 3lv1_A*
Probab=38.80 E-value=39 Score=30.62 Aligned_cols=66 Identities=17% Similarity=0.332 Sum_probs=42.0
Q ss_pred ChHHHHhHHhhhcc-----cC------CeeEEeChhhHHHHHHHHhhhc---C-----CCccChHHHHHHHHHHhhhCCe
Q 028248 2 SNEEFDNLKEELMW-----EG------SSVVMLSSAEQKFLEASMAYVA---G-----KPIMSDEEYDKLKQKLKMEGSE 62 (211)
Q Consensus 2 s~eefd~lkeel~w-----eG------ssv~~l~~~Eq~fLeA~~aY~~---G-----~Pi~sD~efD~Lk~~Lk~~GS~ 62 (211)
.|.+.|.--+.+.| .| +.+++-...-.+|++++.+..+ + -|+++.+.+++++.-+...+.+
T Consensus 247 ~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~p~~~~~gpli~~~~~~rv~~~i~~a~~~ 326 (457)
T 3lns_A 247 PDADLDQTVNQLMFGKFINSGQTXIAPDYLYVHYSVKDALLERLVERVKTELPEINSTGKLVTERQVQRLVSLLEATQGQ 326 (457)
T ss_dssp TTCCHHHHHHHHHHHHHGGGGCCTTSEEEEEEEGGGHHHHHHHHHHHHHHHCCSTTTTCCCSSHHHHHHHHHHHHHCCSE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCccCCceEEEcHHHHHHHHHHHHHHHHhcCCCcccccCCCCHHHHHHHHHHHHhcCCe
Confidence 34455666666666 34 2344444445778887654222 2 2899999999999999876655
Q ss_pred eeeec
Q 028248 63 IVVEG 67 (211)
Q Consensus 63 vv~~~ 67 (211)
++.-|
T Consensus 327 ~~~gg 331 (457)
T 3lns_A 327 VLVGS 331 (457)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 55444
No 122
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=38.48 E-value=11 Score=27.05 Aligned_cols=12 Identities=33% Similarity=1.038 Sum_probs=8.9
Q ss_pred eecCCCCCcccc
Q 028248 155 LKGPCPNCGTEN 166 (211)
Q Consensus 155 LkG~CPnCg~Ev 166 (211)
-.--|||||.+-
T Consensus 22 ~~~~CPnC~s~~ 33 (69)
T 1ryq_A 22 SEDRCPVCGSRD 33 (69)
T ss_dssp SSSSCTTTCCCC
T ss_pred cCCcCCCccCCc
Confidence 445699998765
No 123
>1zso_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.17A {Plasmodium falciparum} SCOP: b.166.1.1
Probab=38.41 E-value=12 Score=30.63 Aligned_cols=44 Identities=11% Similarity=0.036 Sum_probs=27.6
Q ss_pred eeecCCCCCcccce-eecccc----ccccCCCCcCceeCCCCCceeEEe
Q 028248 154 ILKGPCPNCGTENV-SFFGTI----LSISSGGTTNTINCSNCGTTMVYD 197 (211)
Q Consensus 154 iLkG~CPnCg~Ev~-aFfg~i----~~v~s~~~~~~~kC~~C~~~L~f~ 197 (211)
.+|=.|.|||++-- .++-.. .+.+.+..+.-.||..|++....+
T Consensus 35 ~fkvkC~~C~E~~~kv~v~~~e~~ei~gsRG~aNfv~KCk~C~re~Si~ 83 (164)
T 1zso_A 35 IFNIRDSTSSLTRDNIQFRKTDILEIPNSRGTANFMIKWTEYPKYSTIN 83 (164)
T ss_dssp EEEEEETTSSCEEEEEEECTTCBEECTTSSCEESEEECCSSSSCCEEEE
T ss_pred EEEEEECCCCcccCCEEEcchheeecCCCCcceeEEEeccccCCcceEE
Confidence 47778999999754 332211 122334456678999999865543
No 124
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=38.27 E-value=8.4 Score=32.70 Aligned_cols=17 Identities=12% Similarity=0.331 Sum_probs=12.7
Q ss_pred cCceeCCCCCceeEEec
Q 028248 182 TNTINCSNCGTTMVYDS 198 (211)
Q Consensus 182 ~~~~kC~~C~~~L~f~~ 198 (211)
+.+.+||.|++...++.
T Consensus 215 ~~~~~CP~C~~~W~~~~ 231 (238)
T 3nw0_A 215 NAEPRCPHCNDYWPHEI 231 (238)
T ss_dssp CSSCBCTTTCCBCCSCC
T ss_pred CCCCCCCCCCCCCCCCC
Confidence 45678999999866554
No 125
>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}
Probab=38.13 E-value=16 Score=28.91 Aligned_cols=39 Identities=23% Similarity=0.557 Sum_probs=27.3
Q ss_pred CCCCCcccce-------------eecccccc-------ccCCCCcCceeCCCCCcee--EE
Q 028248 158 PCPNCGTENV-------------SFFGTILS-------ISSGGTTNTINCSNCGTTM--VY 196 (211)
Q Consensus 158 ~CPnCg~Ev~-------------aFfg~i~~-------v~s~~~~~~~kC~~C~~~L--~f 196 (211)
.|-+||++.| +|+..|.. ..+...+.++.|.+|+.-| +|
T Consensus 22 ~C~~Cg~pLF~S~~KfdSg~GWPSF~~~i~~~~v~~~~d~~~~~r~Ev~C~~Cg~HLGHVF 82 (124)
T 2kv1_A 22 VCAKCSYELFSSHSKYAHSSPWPAFTETIHPDSVTKCPEKNRPEALKVSCGKCGNGLGHEF 82 (124)
T ss_dssp EETTTCCBCCCTTSCCCCCSSSCCBSCCCCCSSCEEEECSSSTTCEEEECTTTTCCCEEEC
T ss_pred EecCCCCcccccCCcccCCCCCceeecccccceEEEEeccCCceEEEEEEecCCCccCCcc
Confidence 5889999987 57766532 2233346688999999876 45
No 126
>2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex, oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB: 2ilu_A* 2hg2_A* 2opx_A*
Probab=37.81 E-value=92 Score=28.33 Aligned_cols=67 Identities=15% Similarity=0.334 Sum_probs=45.2
Q ss_pred ChHHHHhHHhhhcc-----cC------CeeEEeChhhHHHHHHHHh----hhcCC----------CccChHHHHHHHHHH
Q 028248 2 SNEEFDNLKEELMW-----EG------SSVVMLSSAEQKFLEASMA----YVAGK----------PIMSDEEYDKLKQKL 56 (211)
Q Consensus 2 s~eefd~lkeel~w-----eG------ssv~~l~~~Eq~fLeA~~a----Y~~G~----------Pi~sD~efD~Lk~~L 56 (211)
.|.+.|..-+.+.| .| +.+++-...-.+|++++.+ ++-|. |+++.+.+|+++.-+
T Consensus 262 ~dADl~~aa~~i~~~~~~n~GQ~C~a~~rv~V~~~i~d~f~~~l~~~~~~~~~g~p~~~~~~~~gpli~~~~~~rv~~~i 341 (479)
T 2imp_A 262 DDADLELAVKAIVDSRVINSGQVCNCAERVYVQKGIYDQFVNRLGEAMQAVQFGNPAERNDIAMGPLINAAALERVEQKV 341 (479)
T ss_dssp TTSCHHHHHHHHHTTSSTTTTCCSSSCSEEEEEGGGHHHHHHHHHHHHHTCCBSCTTTCSSCSBCCCSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhcCCCcCcCCcEEEEehhhHHHHHHHHHHHHHhcccCCccccCCCccCCCcCHHHHHHHHHHH
Confidence 34566666777777 33 4445555556788888654 44443 688999999999877
Q ss_pred hh---hCCeeeeecc
Q 028248 57 KM---EGSEIVVEGP 68 (211)
Q Consensus 57 k~---~GS~vv~~~p 68 (211)
.. +|.+++.-|.
T Consensus 342 ~~a~~~Ga~~~~gG~ 356 (479)
T 2imp_A 342 ARAVEEGARVAFGGK 356 (479)
T ss_dssp HHHHHTTCEEEECCC
T ss_pred HHHHHCCCEEEECCc
Confidence 54 5888877554
No 127
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=37.31 E-value=17 Score=29.88 Aligned_cols=26 Identities=31% Similarity=0.749 Sum_probs=19.0
Q ss_pred cCCCCCcccceeeccccccccCCCCcCceeCCCCCcee
Q 028248 157 GPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTM 194 (211)
Q Consensus 157 G~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L 194 (211)
..|+.|+.++. +| .-++-|.+||...
T Consensus 162 ~~C~~C~~~F~-~~-----------~rrhhCr~CG~v~ 187 (220)
T 1dvp_A 162 RVCHRCRVEFT-FT-----------NRKHHCRNCGQVF 187 (220)
T ss_dssp SBCTTTCCBCC-SS-----------SCCEECTTTCCEE
T ss_pred CccCCCCCccC-Cc-----------ccccccCCcCCEE
Confidence 47999998754 42 5678888888753
No 128
>2o4d_A Hypothetical protein PA0269; unknown function; 1.85A {Pseudomonas aeruginosa} SCOP: a.152.1.3 PDB: 2ijc_A
Probab=36.93 E-value=24 Score=27.65 Aligned_cols=49 Identities=12% Similarity=0.264 Sum_probs=34.3
Q ss_pred CChHHHHhHHhhhcccCCeeEEeChhhHHHHHHHHhhhcC-CCccChHHHHHHHH
Q 028248 1 MSNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAG-KPIMSDEEYDKLKQ 54 (211)
Q Consensus 1 ~s~eefd~lkeel~weGssv~~l~~~Eq~fLeA~~aY~~G-~Pi~sD~efD~Lk~ 54 (211)
+|+|+.+.++ .|..++ ..++.|+.-|+...+...- +--++|+.|++|++
T Consensus 84 ~s~e~i~~l~---~~~~~~--~~~~~erA~l~~a~~lt~~~~~~v~d~~~~~l~~ 133 (165)
T 2o4d_A 84 ETEQRLQALC---VWQETP--YFTPRERAALAWTEQLARLSQGALPHGLLDELRE 133 (165)
T ss_dssp CCHHHHHHGG---GGGGCS--CSCHHHHHHHHHHHHHHTGGGSCCCTTHHHHHTT
T ss_pred CCHHHHHHHH---hccccC--CCCHHHHHHHHHHHHHHhCcCCCCCHHHHHHHHH
Confidence 3566666665 577665 4688898888877776653 23589999999765
No 129
>3mhs_C SAGA-associated factor 11; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3m99_B 3mhh_C 4fjc_C 4fk5_C 4fip_C 2lo2_A 3kjl_E 3kik_E
Probab=36.90 E-value=19 Score=27.53 Aligned_cols=39 Identities=23% Similarity=0.474 Sum_probs=24.2
Q ss_pred eeecCCCCCccc------ceeeccccccccCCCCcCceeCCCCCceeE
Q 028248 154 ILKGPCPNCGTE------NVSFFGTILSISSGGTTNTINCSNCGTTMV 195 (211)
Q Consensus 154 iLkG~CPnCg~E------v~aFfg~i~~v~s~~~~~~~kC~~C~~~L~ 195 (211)
.+.+.+|++-.- ..--||...+ ..+.-.+.|+||++++.
T Consensus 37 ~l~~r~p~~k~y~~~~~~~lDIfG~~~~---~~~s~~~~C~nC~R~va 81 (99)
T 3mhs_C 37 LLKTRYPDLRSYYFDPNGSLDINGLQKQ---QESSQYIHCENCGRDVS 81 (99)
T ss_dssp HHHHHCTTCCCCCCCTTSCSCTTSCCCC---CTTSCEEECTTTCCEEE
T ss_pred HHhccCCCCCCceecCCCCcccCCCcCc---ccCCCeEECCCCCCCch
Confidence 367778887321 1133444322 25677899999999875
No 130
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=36.66 E-value=17 Score=23.63 Aligned_cols=38 Identities=16% Similarity=0.413 Sum_probs=20.2
Q ss_pred CCCCCcccceeeccccccccCCCCcCceeCCCCCceeE
Q 028248 158 PCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMV 195 (211)
Q Consensus 158 ~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L~ 195 (211)
.|+.|+.....--.-..-...-......+|+.|+....
T Consensus 20 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 57 (77)
T 2cot_A 20 KCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFI 57 (77)
T ss_dssp BCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEES
T ss_pred ECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccC
Confidence 69999976543211011111112234578999997643
No 131
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=36.61 E-value=15 Score=22.05 Aligned_cols=14 Identities=21% Similarity=0.586 Sum_probs=9.6
Q ss_pred CcCceeCCCCCcee
Q 028248 181 TTNTINCSNCGTTM 194 (211)
Q Consensus 181 ~~~~~kC~~C~~~L 194 (211)
...+++||+|...|
T Consensus 3 pef~vqcpvcqq~m 16 (29)
T 3vhs_A 3 PEFQVQCPVCQQMM 16 (29)
T ss_dssp --CEEECTTTCCEE
T ss_pred CceeeeChHHHHhC
Confidence 35678999998655
No 132
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=36.61 E-value=6.5 Score=28.66 Aligned_cols=43 Identities=14% Similarity=0.315 Sum_probs=25.5
Q ss_pred ecCCCCCcccceee--ccccccccCCCCcCceeCCC--CCceeEEec
Q 028248 156 KGPCPNCGTENVSF--FGTILSISSGGTTNTINCSN--CGTTMVYDS 198 (211)
Q Consensus 156 kG~CPnCg~Ev~aF--fg~i~~v~s~~~~~~~kC~~--C~~~L~f~~ 198 (211)
...||.|..++..- ......+...-...++.|++ |+..+.++.
T Consensus 58 ~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l~v~C~~~gC~~~~~~~~ 104 (116)
T 1rmd_A 58 GSYCPSCRYPCFPTDLESPVKSFLNILNSLMVKCPAQDCNEEVSLEK 104 (116)
T ss_dssp CSBCTTTCCBCCGGGCBCCCHHHHHHHHHCEEECCSTTCCCEEEHHH
T ss_pred cCcCCCCCCCCCHhhccccHHHHHHHHHHhcCCCCCCCCcchhhHhH
Confidence 35799999987631 11111122222456789987 888776543
No 133
>3gzf_A Replicase polyprotein 1AB; FCOV, NSP4, viral protein; 2.76A {Feline coronavirus}
Probab=36.44 E-value=76 Score=24.06 Aligned_cols=62 Identities=16% Similarity=0.325 Sum_probs=42.7
Q ss_pred ChHHHHhHHhhhcccCCeeEEeChh-hHHHHHH--HHhhhcCCCccChHHHHHH------H--HHHhhhCCeeeeeccce
Q 028248 2 SNEEFDNLKEELMWEGSSVVMLSSA-EQKFLEA--SMAYVAGKPIMSDEEYDKL------K--QKLKMEGSEIVVEGPRC 70 (211)
Q Consensus 2 s~eefd~lkeel~weGssv~~l~~~-Eq~fLeA--~~aY~~G~Pi~sD~efD~L------k--~~Lk~~GS~vv~~~prC 70 (211)
+++.|-+|+.+ ++.+ =+++|.. ...||+|. |++++|+.- | ..-+..|.+|.-.-|+|
T Consensus 23 d~~~Y~kL~n~----------is~~~~~~Yla~yNKYKYySGs--~~~adYr~Ac~AhLakAl~~fs~~g~d~LYtPP~~ 90 (96)
T 3gzf_A 23 DMRSYETLVNS----------TSLDRIKSYANSFNKYKYYTGS--MGEADYRMACYAHLGKALMDYSVSRNDKLYTPPTV 90 (96)
T ss_dssp CHHHHHHHHTT----------TTHHHHHHHHHTHHHHHSCCSC--CCHHHHHHHHHHHHHHHHHHHHHSCCCEEECCCEE
T ss_pred ccHHHHHHHhh----------cCHHHHHHHHHHHhhhccccCC--cchHHHHHHHHHHHHHHHHHHhccCCceeeCCCcc
Confidence 45667777765 2322 3667665 44699996 899999853 1 34566788888889999
Q ss_pred eecCc
Q 028248 71 SLRSR 75 (211)
Q Consensus 71 slr~~ 75 (211)
|+-+.
T Consensus 91 Sv~St 95 (96)
T 3gzf_A 91 SVNST 95 (96)
T ss_dssp EEECC
T ss_pred cccCC
Confidence 98653
No 134
>1byy_A Protein (sodium channel alpha-subunit); membrane protein; NMR {Rattus norvegicus} SCOP: j.12.1.1
Probab=36.37 E-value=12 Score=24.97 Aligned_cols=37 Identities=19% Similarity=0.453 Sum_probs=17.4
Q ss_pred HHHHhHHhhhcccCCeeEEeChhhHHHHHHHHhhhcCCCc
Q 028248 4 EEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPI 43 (211)
Q Consensus 4 eefd~lkeel~weGssv~~l~~~Eq~fLeA~~aY~~G~Pi 43 (211)
+-|..+|+.+ |+.-++|.++.+++.+|+....+-+|.
T Consensus 1 dnFn~~k~k~---gg~~~fmT~~Qkk~y~amkkl~~~kP~ 37 (53)
T 1byy_A 1 DNFNQQKKKF---GGQDIFMTEEQKKYYNAMKKLGSKKPQ 37 (53)
T ss_dssp ---------------CCSCCCHHHHHHHHHHHTSCC----
T ss_pred CcHHHHHHHh---cCCccccCHHHHHHHHHHHHHhccCCC
Confidence 3477888886 345678889999999998876665553
No 135
>3r8s_0 50S ribosomal protein L32; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Z 1p86_Z 2awb_0 2aw4_0 2i2v_0 2j28_0 2i2t_0* 2qao_0* 2qba_0* 2qbc_0* 2qbe_0 2qbg_0 2qbi_0* 2qbk_0* 2qov_0 2qox_0 2qoz_0* 2qp1_0* 2rdo_0 2vhm_0 ...
Probab=36.34 E-value=10 Score=25.77 Aligned_cols=10 Identities=10% Similarity=0.145 Sum_probs=8.0
Q ss_pred cCCCCCcccc
Q 028248 157 GPCPNCGTEN 166 (211)
Q Consensus 157 G~CPnCg~Ev 166 (211)
-.||+||+-.
T Consensus 28 ~~c~~cGe~~ 37 (56)
T 3r8s_0 28 SVDKTSGEKH 37 (56)
T ss_dssp EECTTTCCEE
T ss_pred eECCCCCCee
Confidence 5799999943
No 136
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=35.62 E-value=16 Score=24.32 Aligned_cols=12 Identities=17% Similarity=0.509 Sum_probs=7.9
Q ss_pred CceeCCCCCcee
Q 028248 183 NTINCSNCGTTM 194 (211)
Q Consensus 183 ~~~kC~~C~~~L 194 (211)
...+|+.|+...
T Consensus 63 ~~~~C~~C~~~f 74 (96)
T 2dmd_A 63 RPFKCQICPYAS 74 (96)
T ss_dssp CCEECSSSSCEE
T ss_pred CCccCCCCCCcc
Confidence 346788887654
No 137
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=35.50 E-value=18 Score=25.01 Aligned_cols=31 Identities=16% Similarity=0.518 Sum_probs=21.5
Q ss_pred hhhccceeeecCCCCCcccceeeccccccccCCCCcCceeCCCCCcee
Q 028248 147 LIVRESLILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTM 194 (211)
Q Consensus 147 ~~~~d~liLkG~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L 194 (211)
.|..|. .|..|+.++. +| .-+.-|-+||...
T Consensus 7 ~W~~~~-----~C~~C~~~F~-~~-----------~RrHHCR~CG~v~ 37 (73)
T 1vfy_A 7 DWIDSD-----ACMICSKKFS-LL-----------NRKHHCRSCGGVF 37 (73)
T ss_dssp CCCCCS-----BCTTTCCBCB-TT-----------BCCEECTTTCCEE
T ss_pred cCccCC-----cccCCCCccC-Cc-----------cccccCCCCCEEE
Confidence 366653 7999998744 32 5578888888753
No 138
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=35.15 E-value=20 Score=27.46 Aligned_cols=41 Identities=12% Similarity=0.192 Sum_probs=21.8
Q ss_pred eecCCCCCcccceeeccccccc--cCCCCcCceeCCCCCceeEE
Q 028248 155 LKGPCPNCGTENVSFFGTILSI--SSGGTTNTINCSNCGTTMVY 196 (211)
Q Consensus 155 LkG~CPnCg~Ev~aFfg~i~~v--~s~~~~~~~kC~~C~~~L~f 196 (211)
+.-.||.|+.|..-= |...-= =...-+-.+-||-|+.+|+.
T Consensus 31 M~~~CP~Cq~eL~~~-g~~~hC~~C~~~f~~~a~CPdC~q~Lev 73 (101)
T 2jne_A 31 MELHCPQCQHVLDQD-NGHARCRSCGEFIEMKALCPDCHQPLQV 73 (101)
T ss_dssp CCCBCSSSCSBEEEE-TTEEEETTTCCEEEEEEECTTTCSBCEE
T ss_pred ccccCccCCCcceec-CCEEECccccchhhccccCcchhhHHHH
Confidence 457899999986421 110000 00012345667777777764
No 139
>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB: 1bpw_A*
Probab=34.48 E-value=1.1e+02 Score=28.24 Aligned_cols=68 Identities=22% Similarity=0.378 Sum_probs=45.6
Q ss_pred ChHHHHhHHhhhcc-----cC------CeeEEeChhhHHHHHHHHh----hhcCC---------CccChHHHHHHHHHHh
Q 028248 2 SNEEFDNLKEELMW-----EG------SSVVMLSSAEQKFLEASMA----YVAGK---------PIMSDEEYDKLKQKLK 57 (211)
Q Consensus 2 s~eefd~lkeel~w-----eG------ssv~~l~~~Eq~fLeA~~a----Y~~G~---------Pi~sD~efD~Lk~~Lk 57 (211)
.|.+.|.--+.+.| .| +.+++-...-.+|++++.+ ++-|. |+++.+.+|+++.-+.
T Consensus 274 ~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~G~p~~~~~~~gpli~~~~~~rv~~~i~ 353 (503)
T 1a4s_A 274 KDCELENAVRGALMANFLTQGQVCTNGTRVFVQREIMPQFLEEVVKRTKAIVVGDPLLTETRMGGLISKPQLDKVLGFVA 353 (503)
T ss_dssp TTSCHHHHHHHHHHTTCGGGGCCTTCCCEEEEEGGGHHHHHHHHHHHHHTCCBSCTTSTTCCBCCCSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCcCCcEEEEehHHHHHHHHHHHHHHHhcCCCCCcccCCccCCCcCHHHHHHHHHHHH
Confidence 34556666666666 23 4455555556788888654 44464 6899999999998875
Q ss_pred ---hhCCeeeeeccc
Q 028248 58 ---MEGSEIVVEGPR 69 (211)
Q Consensus 58 ---~~GS~vv~~~pr 69 (211)
.+|.+++.-|.+
T Consensus 354 ~a~~~Ga~~~~gG~~ 368 (503)
T 1a4s_A 354 QAKKEGARVLCGGEP 368 (503)
T ss_dssp HHHHHTCEEEECCSB
T ss_pred HHHHCCCEEEeCCcc
Confidence 468888775543
No 140
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=34.47 E-value=18 Score=30.08 Aligned_cols=25 Identities=24% Similarity=0.648 Sum_probs=18.2
Q ss_pred CCCCCcccceeeccccccccCCCCcCceeCCCCCcee
Q 028248 158 PCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTM 194 (211)
Q Consensus 158 ~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L 194 (211)
.|+.|+.++..| .-++-|.+||...
T Consensus 166 ~C~~C~~~F~~~------------~RrhHCR~CG~v~ 190 (226)
T 3zyq_A 166 ECHRCRVQFGVM------------TRKHHCRACGQIF 190 (226)
T ss_dssp BCTTTCCBCBTT------------BCCEECTTTCCEE
T ss_pred CCcCcCCCCCcc------------ccccccCCCcCEe
Confidence 699999875533 4578888888653
No 141
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=34.46 E-value=13 Score=27.37 Aligned_cols=11 Identities=36% Similarity=1.214 Sum_probs=8.6
Q ss_pred cCCCCCcccce
Q 028248 157 GPCPNCGTENV 167 (211)
Q Consensus 157 G~CPnCg~Ev~ 167 (211)
..|||||.+.+
T Consensus 36 d~CPnCgs~~~ 46 (81)
T 3p8b_A 36 DRCPVCGSRDL 46 (81)
T ss_dssp SSCTTTCCCCE
T ss_pred CCCCCCCCCcc
Confidence 36999998763
No 142
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A
Probab=34.35 E-value=52 Score=31.18 Aligned_cols=105 Identities=14% Similarity=0.137 Sum_probs=61.5
Q ss_pred hHHHHhHHhhhcccCCeeEEeChhhHHHHHHHHhhhcCCCccCh-----HHHHHHHHHHhhhCCeeeeeccceeecCcce
Q 028248 3 NEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIMSD-----EEYDKLKQKLKMEGSEIVVEGPRCSLRSRKV 77 (211)
Q Consensus 3 ~eefd~lkeel~weGssv~~l~~~Eq~fLeA~~aY~~G~Pi~sD-----~efD~Lk~~Lk~~GS~vv~~~prCslr~~~~ 77 (211)
.||+.++-..+.=+-.-.+.+.+..-+-+||...+|.|++||.| +.|+++=.-.+.+|-.|++...+ ++ .
T Consensus 369 ~ee~~rvv~~i~~~~~vpisIDT~~~~v~eaal~~~~G~~iINdis~~~~~~~~~~~~~~~~g~~vV~m~~~----~~-~ 443 (566)
T 1q7z_A 369 VRYVEKIVQTLPYVSNVPLSLDIQNVDLTERALRAYPGRSLFNSAKVDEEELEMKINLLKKYGGTLIVLLMG----KD-V 443 (566)
T ss_dssp HHHHHHHHHHHHHHTCSCEEEECCCHHHHHHHHHHCSSCCEEEEEESCHHHHHHHHHHHHHHCCEEEEESCS----SS-C
T ss_pred HHHHHHHHHHHHhhCCceEEEeCCCHHHHHHHHHhcCCCCEEEECCcchhhHHHHHHHHHHhCCeEEEEeCC----CC-C
Confidence 46666666555323223456666677777776666699999988 55666666678899999987532 21 1
Q ss_pred eeccchhHHHHHhhhhhhHHHHhhhh--hhccccc---ccee
Q 028248 78 YSDLSVDYLKMLLLNVPATVVALGLF--FFLDDIT---GFEI 114 (211)
Q Consensus 78 ysD~e~D~~km~ll~~~~~~~~lGl~--~~~~d~~---gf~i 114 (211)
-.+.+ |. .-++...-......|+- ..+|..+ ||+.
T Consensus 444 p~t~~-~~-~~~l~~~~~~a~~~Gi~~~IilDPg~~~igfgk 483 (566)
T 1q7z_A 444 PKSFE-ER-KEYFEKALKILERHDFSDRVIFDPGVLPLGAEG 483 (566)
T ss_dssp CCSHH-HH-HHHHHHHHHHHHHTTCGGGEEEECCCCCTTTTC
T ss_pred cCCHH-HH-HHHHHHHHHHHHHCCCCCcEEEeCCCCcccCcH
Confidence 01111 32 22233344445567773 4456666 6655
No 143
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=33.91 E-value=10 Score=24.54 Aligned_cols=39 Identities=13% Similarity=0.183 Sum_probs=20.2
Q ss_pred cCCCCCcccceeeccccccccCCCCcCceeCCCCCceeE
Q 028248 157 GPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMV 195 (211)
Q Consensus 157 G~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L~ 195 (211)
=.|+.|+.....--.-..-...-......+|+.|+....
T Consensus 18 ~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~ 56 (74)
T 2lce_A 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFN 56 (74)
T ss_dssp BCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEES
T ss_pred eECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhC
Confidence 369999987543210000001111223479999997643
No 144
>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Lactobacillus acidophilus}
Probab=33.84 E-value=1.2e+02 Score=27.71 Aligned_cols=68 Identities=21% Similarity=0.342 Sum_probs=45.6
Q ss_pred ChHHHHhHHhhhcc-----cC------CeeEEeChhhHHHHHHHHh----hhcCC---------CccChHHHHHHHHHHh
Q 028248 2 SNEEFDNLKEELMW-----EG------SSVVMLSSAEQKFLEASMA----YVAGK---------PIMSDEEYDKLKQKLK 57 (211)
Q Consensus 2 s~eefd~lkeel~w-----eG------ssv~~l~~~Eq~fLeA~~a----Y~~G~---------Pi~sD~efD~Lk~~Lk 57 (211)
.|.+.|.--+.+.| .| +.+++-.+.-.+|++++.+ ++-|. |+++.+.+|+++.-+.
T Consensus 242 ~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~G~p~~~~~~~gpli~~~~~~rv~~~i~ 321 (484)
T 3ros_A 242 DDADPQVLRNVLNDARTYNDGQVCTSSKRIIVEKSRYDEVLHELKNVFSNLKAGDPLEADTTLPPMNSEKAKEKLEAQVK 321 (484)
T ss_dssp TTCCHHHHHHHHTTTTTGGGGCCTTSCCEEEEEGGGHHHHHHHHHHHHHTCCBSCTTSTTCCBCCCSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCCCCCccCCceEEEcHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCCHHHHHHHHHHHH
Confidence 35566666677777 33 3445555556778887654 44454 6799999999997765
Q ss_pred ---hhCCeeeeeccc
Q 028248 58 ---MEGSEIVVEGPR 69 (211)
Q Consensus 58 ---~~GS~vv~~~pr 69 (211)
.+|.+++.-|.+
T Consensus 322 ~a~~~Ga~v~~gG~~ 336 (484)
T 3ros_A 322 EAIDAGAKVFYQYPE 336 (484)
T ss_dssp HHHHTTCEEEEECCC
T ss_pred HHHHcCCeEEecCCc
Confidence 478888876643
No 145
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=33.80 E-value=22 Score=27.23 Aligned_cols=49 Identities=14% Similarity=0.368 Sum_probs=30.5
Q ss_pred HHhhhccceeeecCCCCCcccceeeccccccccCCCCcCceeCCCCCceeEEecCceeEeCCC
Q 028248 145 TKLIVRESLILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYDSNTRLITLPE 207 (211)
Q Consensus 145 t~~~~~d~liLkG~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L~f~~~~r~i~~pe 207 (211)
...|..|.. -..|+.|+..+. +| .-++-|.+||..+=-+=....+.+|.
T Consensus 60 ~~~W~~d~~--~~~C~~C~~~Fs-~~-----------~RrHHCR~CG~vfC~~Cs~~~~~~p~ 108 (125)
T 1joc_A 60 NRKWAEDNE--VQNCMACGKGFS-VT-----------VRRHHCRQCGNIFCAECSAKNALTPS 108 (125)
T ss_dssp HCCCCCGGG--CCBCTTTCCBCC-SS-----------SCCEECTTTCCEECGGGSCEEECCTT
T ss_pred CCccccCCC--CCCCcCcCCccc-cc-----------cccccCCCCCeEEChHHhCCccccCC
Confidence 446888865 247999999743 32 56788999987543222333344453
No 146
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=33.74 E-value=18 Score=26.02 Aligned_cols=34 Identities=15% Similarity=0.382 Sum_probs=23.2
Q ss_pred eecCCCCCcccceeeccccccccCCCCcCceeCCCCCceeEEec
Q 028248 155 LKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYDS 198 (211)
Q Consensus 155 LkG~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L~f~~ 198 (211)
+.--|..|+.....-| ...-.||+.|++-=+-..
T Consensus 36 v~I~CnDC~~~s~v~~----------h~lg~kC~~C~SyNTr~~ 69 (79)
T 2k2d_A 36 VDILCNDCNGRSTVQF----------HILGMKCKICESYNTAQA 69 (79)
T ss_dssp EEEEESSSCCEEEEEC----------CTTCCCCTTTSCCCEEES
T ss_pred eEEECCCCCCCccCCc----------eeecccCcCCCCcCeEec
Confidence 4556999999877654 223349999998654443
No 147
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=33.61 E-value=53 Score=25.62 Aligned_cols=31 Identities=23% Similarity=0.658 Sum_probs=21.6
Q ss_pred hccceeeecCCCCCcccceeeccccccccCCCCcCceeCCCCCce
Q 028248 149 VRESLILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTT 193 (211)
Q Consensus 149 ~~d~liLkG~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~ 193 (211)
+++--++-.-|++||+- +| +-+.-|+.|++.
T Consensus 40 l~~grL~~~rC~~CG~~---~~-----------PPr~~Cp~C~s~ 70 (145)
T 3irb_A 40 LKQNKIIGSKCSKCGRI---FV-----------PARSYCEHCFVK 70 (145)
T ss_dssp HHTTCCEEEECTTTCCE---EE-----------SCCSEETTTTEE
T ss_pred HHcCeEEEEEeCCCCcE---Ec-----------CchhhCcCCCCC
Confidence 44445577889999973 32 345679999875
No 148
>4glw_A DNA ligase; inhibitor, ligase-ligase inhibitor complex; HET: DNA 0XT NMN; 2.00A {Streptococcus pneumoniae}
Probab=33.60 E-value=8.7 Score=33.95 Aligned_cols=14 Identities=43% Similarity=0.748 Sum_probs=3.0
Q ss_pred CChHHHHhHHhhhc
Q 028248 1 MSNEEFDNLKEELM 14 (211)
Q Consensus 1 ~s~eefd~lkeel~ 14 (211)
+||+|||.|.+||.
T Consensus 27 IsD~eYD~L~~eL~ 40 (305)
T 4glw_A 27 VSDSEYDRLYRELV 40 (305)
T ss_dssp ----------CHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 69999999998885
No 149
>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence, kinetics, oxidor; 2.10A {Escherichia coli} SCOP: c.82.1.1 PDB: 1wnb_A
Probab=33.60 E-value=1e+02 Score=28.31 Aligned_cols=67 Identities=13% Similarity=0.276 Sum_probs=45.0
Q ss_pred ChHHHHhHHhhhcc-----cC------CeeEEeChhhHHHHHHHHh----hhcCC---------CccChHHHHHHHHHHh
Q 028248 2 SNEEFDNLKEELMW-----EG------SSVVMLSSAEQKFLEASMA----YVAGK---------PIMSDEEYDKLKQKLK 57 (211)
Q Consensus 2 s~eefd~lkeel~w-----eG------ssv~~l~~~Eq~fLeA~~a----Y~~G~---------Pi~sD~efD~Lk~~Lk 57 (211)
.|.+.|.--+.+.| .| +.+++-...-.+|++++.+ ++-|. |+++.+.+|+++.-+.
T Consensus 278 ~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~g~p~~~~~~~Gpli~~~~~~rv~~~i~ 357 (495)
T 1wnd_A 278 DDADIEAVVEGVRTFGYYNAGQDCTAACRIYAQKGIYDTLVEKLGAAVATLKSGAPDDESTELGPLSSLAHLERVGKAVE 357 (495)
T ss_dssp TTSCHHHHHHHHHHHTTGGGGCSTTCCCEEEEETTTHHHHHHHHHHHHHTCCBCCTTSTTCCBCCCSCHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHhcCCCCCCCCcEEEecchhHHHHHHHHHHHHHhccCCCCccCCCCccCCCCHHHHHHHHHHHH
Confidence 34455666666666 33 4455555556788888654 44454 6899999999998876
Q ss_pred h---hC-Ceeeeecc
Q 028248 58 M---EG-SEIVVEGP 68 (211)
Q Consensus 58 ~---~G-S~vv~~~p 68 (211)
. +| .+++.-|.
T Consensus 358 ~a~~~G~a~~~~gG~ 372 (495)
T 1wnd_A 358 EAKATGHIKVITGGE 372 (495)
T ss_dssp HHHHTSSCEEEECCS
T ss_pred HHHhCCCeEEEECCc
Confidence 5 58 78777654
No 150
>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...
Probab=33.24 E-value=67 Score=28.14 Aligned_cols=104 Identities=17% Similarity=0.205 Sum_probs=58.1
Q ss_pred hHHHHhHH---hhhcccCCeeEEeChhhHHHHHHHHhhhcCCCccChHH----HHHHHHHHhhhCCeeeeeccceeecCc
Q 028248 3 NEEFDNLK---EELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIMSDEE----YDKLKQKLKMEGSEIVVEGPRCSLRSR 75 (211)
Q Consensus 3 ~eefd~lk---eel~weGssv~~l~~~Eq~fLeA~~aY~~G~Pi~sD~e----fD~Lk~~Lk~~GS~vv~~~prCslr~~ 75 (211)
+||.+++. +++.=+-.-.+.+-+..-+-++|...+ |.+||.|-- .+++=.-.+.+|..+++.-. +|.
T Consensus 97 ~eE~~RvvpvI~~l~~~~~vpiSIDT~~~~V~~aAl~a--Ga~iINdvsg~~~d~~m~~~aa~~g~~vVlmh~----~G~ 170 (297)
T 1tx2_A 97 EEEIKRVVPMIQAVSKEVKLPISIDTYKAEVAKQAIEA--GAHIINDIWGAKAEPKIAEVAAHYDVPIILMHN----RDN 170 (297)
T ss_dssp HHHHHHHHHHHHHHHHHSCSCEEEECSCHHHHHHHHHH--TCCEEEETTTTSSCTHHHHHHHHHTCCEEEECC----CSC
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEeCCCHHHHHHHHHc--CCCEEEECCCCCCCHHHHHHHHHhCCcEEEEeC----CCC
Confidence 57777766 555433122345555555555554433 999887631 23333345778888888643 455
Q ss_pred ceeeccchhHHHHHhhhhhhHHHHhhhh---hhccccccce
Q 028248 76 KVYSDLSVDYLKMLLLNVPATVVALGLF---FFLDDITGFE 113 (211)
Q Consensus 76 ~~ysD~e~D~~km~ll~~~~~~~~lGl~---~~~~d~~gf~ 113 (211)
+-|.|--.|.... +...-......|+- ..+|..+||.
T Consensus 171 p~y~d~v~ev~~~-l~~~i~~a~~~GI~~~~IilDPg~Gfg 210 (297)
T 1tx2_A 171 MNYRNLMADMIAD-LYDSIKIAKDAGVRDENIILDPGIGFA 210 (297)
T ss_dssp CCCSSHHHHHHHH-HHHHHHHHHHTTCCGGGEEEECCTTSS
T ss_pred CCcchHHHHHHHH-HHHHHHHHHHcCCChhcEEEeCCCCcC
Confidence 5576655455443 33333444477776 4567666764
No 151
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=33.18 E-value=14 Score=23.50 Aligned_cols=38 Identities=16% Similarity=0.270 Sum_probs=19.3
Q ss_pred CCCCCcccceeeccccccccCCCCcCceeCCCCCceeE
Q 028248 158 PCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMV 195 (211)
Q Consensus 158 ~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L~ 195 (211)
.|+.|+.....--.-..-...-......+|+.|+....
T Consensus 11 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~ 48 (70)
T 1x5w_A 11 KCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTK 48 (70)
T ss_dssp ECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEES
T ss_pred ECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccC
Confidence 58999876542210000011111223478999988643
No 152
>3jz4_A Succinate-semialdehyde dehydrogenase [NADP+]; tetramer, NADP binding, oxidoreductase; HET: NAP; 2.30A {Escherichia coli}
Probab=33.08 E-value=1e+02 Score=28.00 Aligned_cols=66 Identities=17% Similarity=0.392 Sum_probs=42.3
Q ss_pred hHHHHhHHhhhcc-----cC------CeeEEeChhhHHHHHHHHhhh----cCC---------CccChHHHHHHHHHHh-
Q 028248 3 NEEFDNLKEELMW-----EG------SSVVMLSSAEQKFLEASMAYV----AGK---------PIMSDEEYDKLKQKLK- 57 (211)
Q Consensus 3 ~eefd~lkeel~w-----eG------ssv~~l~~~Eq~fLeA~~aY~----~G~---------Pi~sD~efD~Lk~~Lk- 57 (211)
|.+.|.--+.+.| .| +.+++-...-.+|++++.+.. -|. |+++.+.+|+++.-+.
T Consensus 266 dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~G~p~~~~~~~gpli~~~~~~~v~~~i~~ 345 (481)
T 3jz4_A 266 DADLDKAVEGALASKFRNAGQTCVCANRLYVQDGVYDRFAEKLQQAMSKLHIGDGLDNGVTIGPLIDEKAVAKVEEHIAD 345 (481)
T ss_dssp TSCHHHHHHHHHHHHHGGGGCSTTSEEEEEEEGGGHHHHHHHHHHHHTTCCBSCTTSTTCCBCCCSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCCcccCCcEEEEeHHHHHHHHHHHHHHHHhccCCCCccCcCccccccCHHHHHHHHHHHHH
Confidence 4445555555555 33 233444444578888876533 343 7899999999998765
Q ss_pred --hhCCeeeeecc
Q 028248 58 --MEGSEIVVEGP 68 (211)
Q Consensus 58 --~~GS~vv~~~p 68 (211)
.+|.+++.-|.
T Consensus 346 a~~~Ga~v~~gg~ 358 (481)
T 3jz4_A 346 ALEKGARVVCGGK 358 (481)
T ss_dssp HHHTTCEEEECCS
T ss_pred HHHCCCEEEeCCc
Confidence 46888887664
No 153
>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics, PSI-2, protein STR initiative; HET: NAD GOL; 1.80A {Mycobacterium tuberculosis}
Probab=32.92 E-value=70 Score=29.40 Aligned_cols=67 Identities=16% Similarity=0.361 Sum_probs=44.6
Q ss_pred ChHHHHhHHhhhcc-----cC------CeeEEeChhhHHHHHHHH----hhhcCC---------CccChHHHHHHHHHHh
Q 028248 2 SNEEFDNLKEELMW-----EG------SSVVMLSSAEQKFLEASM----AYVAGK---------PIMSDEEYDKLKQKLK 57 (211)
Q Consensus 2 s~eefd~lkeel~w-----eG------ssv~~l~~~Eq~fLeA~~----aY~~G~---------Pi~sD~efD~Lk~~Lk 57 (211)
.|.+.|.--+.+.| .| +.+++-...-.+|++++. +++-|. |+++.+.+|+++.-+.
T Consensus 265 ~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~rv~~~i~ 344 (495)
T 3b4w_A 265 EDVDLAAAIPMMVFSGVMNAGQGCVNQTRILAPRSRYDEIVAAVTNFVTALPVGPPSDPAAQIGPLISEKQRTRVEGYIA 344 (495)
T ss_dssp TTCCHHHHHHHHHHHHHGGGGCCTTCEEEEEEEGGGHHHHHHHHHHHHHHSCBCCTTCTTCCBCCCSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhcCCCCCccCCCccCCCcCHHHHHHHHHHHH
Confidence 34556666666666 34 334444455577888764 355564 5899999999998875
Q ss_pred h---hCCeeeeecc
Q 028248 58 M---EGSEIVVEGP 68 (211)
Q Consensus 58 ~---~GS~vv~~~p 68 (211)
. +|.+++.-|.
T Consensus 345 ~a~~~Ga~~~~gG~ 358 (495)
T 3b4w_A 345 KGIEEGARLVCGGG 358 (495)
T ss_dssp HHHHTTCEEEECCS
T ss_pred HHHhCCCEEEecCc
Confidence 4 5888877554
No 154
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=32.65 E-value=20 Score=24.69 Aligned_cols=38 Identities=13% Similarity=0.252 Sum_probs=20.5
Q ss_pred cCCCCCcccceeeccccccccCCCCcCceeCCCCCcee
Q 028248 157 GPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTM 194 (211)
Q Consensus 157 G~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L 194 (211)
=.||.|+.....--.-..-...-......+|+.|+...
T Consensus 38 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f 75 (110)
T 2csh_A 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRF 75 (110)
T ss_dssp EECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEE
T ss_pred ccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchh
Confidence 36999997654321111111222223457899998754
No 155
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=32.42 E-value=25 Score=32.84 Aligned_cols=37 Identities=24% Similarity=0.332 Sum_probs=22.9
Q ss_pred ecCCCCCcccceeeccccccccCCCCcCceeCCCCCceeEEec
Q 028248 156 KGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYDS 198 (211)
Q Consensus 156 kG~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L~f~~ 198 (211)
+..|++|+.++..= ........+.-|+.|+..+.|..
T Consensus 34 ~~~c~~c~~~~~~~------~~~~~~~~~~~c~~c~~~~~~~~ 70 (681)
T 2pzi_A 34 KRFCWNCGRPVGRS------DSETKGASEGWCPYCGSPYSFLP 70 (681)
T ss_dssp GCBCTTTCCBCSCC-----------CCSEEECTTTCCEEECSC
T ss_pred cccCccCCCcCCCc------ccCCCcccCCcCCCCCCccccCC
Confidence 45699999986321 11222334567999999887654
No 156
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=32.39 E-value=7.3 Score=23.64 Aligned_cols=37 Identities=16% Similarity=0.331 Sum_probs=18.4
Q ss_pred CCCCCcccceeeccccccccCCCCcCceeCCCCCcee
Q 028248 158 PCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTM 194 (211)
Q Consensus 158 ~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L 194 (211)
.|+.||.....--.-..-...-......+|+.|+...
T Consensus 6 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f 42 (57)
T 3uk3_C 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAA 42 (57)
T ss_dssp BCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEE
T ss_pred cCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchh
Confidence 5999987654321000000000112347899998754
No 157
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=31.90 E-value=22 Score=28.63 Aligned_cols=35 Identities=20% Similarity=0.593 Sum_probs=22.0
Q ss_pred ecCCCCCcccceeeccccccccCCCCcCceeCCCCC
Q 028248 156 KGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCG 191 (211)
Q Consensus 156 kG~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~ 191 (211)
...||+||.++..||=.|=-.=. .+....-|+.||
T Consensus 71 ~~~C~~Cg~~f~~Y~C~~C~l~d-~~k~~yHC~~Cg 105 (143)
T 2dkt_A 71 QQTCEDCSTLFGEYYCSICHLFD-KDKRQYHCESCG 105 (143)
T ss_dssp CSBCSSSCCBSCSEECSSSCCEE-CSSSEEEETTTT
T ss_pred cCcCCCCCccceeeEeceeeccc-CCCceecCCCCC
Confidence 35899999999988744322111 235556666665
No 158
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.46 E-value=28 Score=24.66 Aligned_cols=34 Identities=26% Similarity=0.544 Sum_probs=23.6
Q ss_pred hhhccceeeecCCCCCcccceeeccccccccCCCCcCceeCCCCCcee
Q 028248 147 LIVRESLILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTM 194 (211)
Q Consensus 147 ~~~~d~liLkG~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L 194 (211)
.|..|.. --.|+.|+.++ ++| .-++-|-+||..+
T Consensus 7 ~W~pd~~--~~~C~~C~~~F-~~~-----------~RrHHCR~CG~vf 40 (84)
T 1x4u_A 7 GRYPTNN--FGNCTGCSATF-SVL-----------KKRRSCSNCGNSF 40 (84)
T ss_dssp CSCSCCC--CSSCSSSCCCC-CSS-----------SCCEECSSSCCEE
T ss_pred ccccCCC--CCcCcCcCCcc-ccc-----------hhhhhhcCCCcEE
Confidence 4677765 23799999985 443 5577888888753
No 159
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=31.34 E-value=27 Score=23.68 Aligned_cols=28 Identities=29% Similarity=0.717 Sum_probs=19.3
Q ss_pred cCCCCCcccceeeccccccccCCCCcCceeCCC--CCcee
Q 028248 157 GPCPNCGTENVSFFGTILSISSGGTTNTINCSN--CGTTM 194 (211)
Q Consensus 157 G~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~--C~~~L 194 (211)
-+||+|+..+-- +..=+...|.+ |+...
T Consensus 7 k~CP~C~~~Iek----------~~GCnhmtC~~~~C~~~F 36 (60)
T 1wd2_A 7 KECPKCHVTIEK----------DGGCNHMVCRNQNCKAEF 36 (60)
T ss_dssp CCCTTTCCCCSS----------CCSCCSSSCCSSGGGSCC
T ss_pred eECcCCCCeeEe----------CCCCCcEEECCCCcCCEE
Confidence 589999976543 33466777887 87654
No 160
>3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious disease, ssgcid, seattle structural genomi for infectious disease; 2.70A {Burkholderia pseudomallei} PDB: 3ifh_Q
Probab=31.27 E-value=1.3e+02 Score=27.43 Aligned_cols=68 Identities=16% Similarity=0.388 Sum_probs=44.6
Q ss_pred ChHHHHhHHhhhcc-----cC------CeeEEeChhhHHHHHHHHh----hhcCC---------CccChHHHHHHHHHHh
Q 028248 2 SNEEFDNLKEELMW-----EG------SSVVMLSSAEQKFLEASMA----YVAGK---------PIMSDEEYDKLKQKLK 57 (211)
Q Consensus 2 s~eefd~lkeel~w-----eG------ssv~~l~~~Eq~fLeA~~a----Y~~G~---------Pi~sD~efD~Lk~~Lk 57 (211)
.|.+.|.--+.+.| .| +.+++-...-.+|++++.+ +.-|. |+++.+.+++++.-+.
T Consensus 268 ~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~G~p~~~~~~~Gpli~~~~~~~v~~~i~ 347 (484)
T 3ifg_A 268 DDADLDAAVEGAIASKYRNNGQTCVCTNRFFVHERVYDAFADKLAAAVSKLKVGRGTESGATLGPLINEAAVKKVESHIA 347 (484)
T ss_dssp TTSCHHHHHHHHHHHHHGGGGCSTTCCCEEEEEGGGHHHHHHHHHHHHHTCCBSCTTSTTCCBCCCSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCcccCCCeEEEcHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcCHHHHHHHHHHHH
Confidence 35556666666666 33 3445545545678887654 44454 6899999999987654
Q ss_pred ---hhCCeeeeeccc
Q 028248 58 ---MEGSEIVVEGPR 69 (211)
Q Consensus 58 ---~~GS~vv~~~pr 69 (211)
.+|.+++.-|.+
T Consensus 348 ~a~~~Ga~v~~gG~~ 362 (484)
T 3ifg_A 348 DALAKGASLMTGGKR 362 (484)
T ss_dssp HHHHTTCEEEECCSB
T ss_pred HHHHCCCEEEECCCc
Confidence 578888876643
No 161
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*
Probab=31.25 E-value=19 Score=26.25 Aligned_cols=22 Identities=23% Similarity=0.599 Sum_probs=17.8
Q ss_pred CCCCCcccceeeccccccccCCCCcCceeCCCCCce
Q 028248 158 PCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTT 193 (211)
Q Consensus 158 ~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~ 193 (211)
.|++|..+|++. +.+|..|++.
T Consensus 67 ~C~~C~~~N~a~--------------~~~C~~C~~p 88 (92)
T 3gj8_B 67 DCEVCLVQNKAD--------------STKCIACESA 88 (92)
T ss_dssp ECTTTCCEECSS--------------CSBCTTTCCB
T ss_pred cCCcCCcCChhh--------------cccccccCCC
Confidence 499999998665 5689999864
No 162
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=31.24 E-value=17 Score=21.43 Aligned_cols=14 Identities=21% Similarity=0.496 Sum_probs=11.1
Q ss_pred ecCCCCCcccceee
Q 028248 156 KGPCPNCGTENVSF 169 (211)
Q Consensus 156 kG~CPnCg~Ev~aF 169 (211)
...||.|+..|+.-
T Consensus 3 ~~~C~~C~k~Vy~~ 16 (31)
T 1zfo_A 3 NPNCARCGKIVYPT 16 (31)
T ss_dssp CCBCSSSCSBCCGG
T ss_pred CCcCCccCCEEecc
Confidence 45799999998854
No 163
>2gmy_A Hypothetical protein ATU0492; structural genomics, PSI, protein structure initiative; 1.60A {Agrobacterium tumefaciens str} SCOP: a.152.1.3
Probab=30.76 E-value=37 Score=25.86 Aligned_cols=50 Identities=16% Similarity=0.282 Sum_probs=33.9
Q ss_pred ChHHHHhHHhhhcccCCeeEEeChhhHHHHHHHHhhhcC-CCccChHHHHHHHHHH
Q 028248 2 SNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAG-KPIMSDEEYDKLKQKL 56 (211)
Q Consensus 2 s~eefd~lkeel~weGssv~~l~~~Eq~fLeA~~aY~~G-~Pi~sD~efD~Lk~~L 56 (211)
|+|+-+.+ ..|..++ ..++.|+.-|+...+.-.- +--++|+.|++|+.-+
T Consensus 65 ~~~~i~~l---~~~~~~~--~~~~~e~A~l~~a~~lt~~~~~~v~d~~~~~l~~~~ 115 (153)
T 2gmy_A 65 SEQWINLM---SVWRESP--VYTEQERALLGWVDAVTKIAETGAPDDAFETLRAHF 115 (153)
T ss_dssp CHHHHHGG---GGGGGCT--TSCHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHS
T ss_pred CHHHHHHH---hcccccC--CCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHC
Confidence 55666655 4577664 3678898777776665543 1258999999998754
No 164
>3g5o_A Uncharacterized protein RV2865; heterotetramer, 1:1 ratio, structural genomics, PSI-2, prote structure initiative; 2.00A {Mycobacterium tuberculosis}
Probab=30.65 E-value=42 Score=24.97 Aligned_cols=25 Identities=16% Similarity=0.364 Sum_probs=16.3
Q ss_pred HHHHHHHHhhhcCCCccChHHHHHHHHHH
Q 028248 28 QKFLEASMAYVAGKPIMSDEEYDKLKQKL 56 (211)
Q Consensus 28 q~fLeA~~aY~~G~Pi~sD~efD~Lk~~L 56 (211)
+...+|...+-.|+.+ .+|.++.+|
T Consensus 69 ~~L~~a~~~~~~G~~~----s~eev~~~l 93 (108)
T 3g5o_A 69 ESIAEADADIASGRTY----GEDEIRAEF 93 (108)
T ss_dssp HHHHHHHHHHHHTCEE----CHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCc----CHHHHHHHh
Confidence 3444455568889976 456677776
No 165
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=30.63 E-value=26 Score=27.44 Aligned_cols=31 Identities=29% Similarity=0.628 Sum_probs=21.7
Q ss_pred eecCCCCCcccceeeccccccccCCCCcCceeCCCCCceeE
Q 028248 155 LKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMV 195 (211)
Q Consensus 155 LkG~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L~ 195 (211)
-+=.||.||.+ ++-+. ...--+|+.|+..+.
T Consensus 59 akytCPfCGk~--~vKR~--------avGIW~C~~Cgk~fA 89 (116)
T 3cc2_Z 59 EDHACPNCGED--RVDRQ--------GTGIWQCSYCDYKFT 89 (116)
T ss_dssp SCEECSSSCCE--EEEEE--------ETTEEEETTTCCEEE
T ss_pred cCCcCCCCCCc--eeEec--------CceeEECCCCCCEEE
Confidence 45679999984 33322 345789999998754
No 166
>1bxs_A Aldehyde dehydrogenase; retinal, class 1, tetramer, NAD, cytosolic, oxidoreductase; HET: NAD; 2.35A {Ovis aries} SCOP: c.82.1.1 PDB: 1o9j_A* 1bi9_A*
Probab=30.62 E-value=1e+02 Score=28.34 Aligned_cols=68 Identities=26% Similarity=0.476 Sum_probs=44.5
Q ss_pred ChHHHHhHHhhhcc-----cC------CeeEEeChhhHHHHHHHHh----hhcCC---------CccChHHHHHHHHHHh
Q 028248 2 SNEEFDNLKEELMW-----EG------SSVVMLSSAEQKFLEASMA----YVAGK---------PIMSDEEYDKLKQKLK 57 (211)
Q Consensus 2 s~eefd~lkeel~w-----eG------ssv~~l~~~Eq~fLeA~~a----Y~~G~---------Pi~sD~efD~Lk~~Lk 57 (211)
.|.+.|.--+.+.| .| +.+++-...-.+|++++.. ++-|. |+++.+.+|+++.-+.
T Consensus 280 ~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~G~p~~~~~~~Gpli~~~~~~rv~~~i~ 359 (501)
T 1bxs_A 280 ADADLDNAVEFAHQGVFYHQGQCCIAASRLFVEESIYDEFVRRSVERAKKYVLGNPLTPGVSQGPQIDKEQYEKILDLIE 359 (501)
T ss_dssp TTSCHHHHHHHHHHHHHTTTTCCTTCCCEEEEEHHHHHHHHHHHHHHHTCCCBSCTTSTTCCBCCCSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCCCCEEEEchhHHHHHHHHHHHHHHhcCCCCCcccCCccCCCcCHHHHHHHHHHHH
Confidence 34556666666666 34 4444444555788888654 44453 7899999999998775
Q ss_pred ---hhCCeeeeeccc
Q 028248 58 ---MEGSEIVVEGPR 69 (211)
Q Consensus 58 ---~~GS~vv~~~pr 69 (211)
.+|.+++.-|.+
T Consensus 360 ~a~~~Ga~~~~gG~~ 374 (501)
T 1bxs_A 360 SGKKEGAKLECGGGP 374 (501)
T ss_dssp HHHHTTCEECSCCSE
T ss_pred HHHhCCCEEEeCCcc
Confidence 458887765543
No 167
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=30.62 E-value=28 Score=25.08 Aligned_cols=34 Identities=24% Similarity=0.452 Sum_probs=23.3
Q ss_pred hhccceeeecCCCCCcccceeeccccccccCCCCcCceeCCCCCceeE
Q 028248 148 IVRESLILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMV 195 (211)
Q Consensus 148 ~~~d~liLkG~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L~ 195 (211)
|..|..+ -.|..|+..+..| .-++-|.+||..+=
T Consensus 14 W~~d~~~--~~C~~C~~~F~~~------------~RrhhCr~CG~v~C 47 (90)
T 3t7l_A 14 WVPDSEA--PNCMNCQVKFTFT------------KRRHHCRACGKVFC 47 (90)
T ss_dssp CCCGGGC--CBCTTTCCBCCSS------------SCCEECTTTCCEEC
T ss_pred CcccccC--CcCcCCCCcccch------------hhCccccCCCCEEC
Confidence 6666542 3699999875433 55788999987653
No 168
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=30.50 E-value=21 Score=27.82 Aligned_cols=33 Identities=21% Similarity=0.378 Sum_probs=23.3
Q ss_pred CCCCCcccceeeccccccccCCCCcCceeCCCCCceeEEec
Q 028248 158 PCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYDS 198 (211)
Q Consensus 158 ~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L~f~~ 198 (211)
-||.||......| +..+..-+|.+|+..+.-+.
T Consensus 129 ~~~~~g~~y~~~~--------~pp~~~~~~~~~~~~l~~r~ 161 (216)
T 3dl0_A 129 ICSVCGTTYHLVF--------NPPKTPGICDKDGGELYQRA 161 (216)
T ss_dssp EETTTCCEEETTT--------BCCSSTTBCTTTCCBEECCT
T ss_pred cCCccCCcccccc--------CCCcccCccccccccccCCC
Confidence 4999998655443 22445668999999887654
No 169
>3sza_A Aldehyde dehydrogenase, dimeric NADP-preferring; ALDH, rossmann fold, oxidoreductase; 1.48A {Homo sapiens} SCOP: c.82.1.1 PDB: 3szb_A* 1ad3_A*
Probab=30.38 E-value=91 Score=28.42 Aligned_cols=65 Identities=18% Similarity=0.423 Sum_probs=42.3
Q ss_pred ChHHHHhHHhhhcc-----cC------CeeEEeChhhHHHHHHHH----hhhcCC---------CccChHHHHHHHHHHh
Q 028248 2 SNEEFDNLKEELMW-----EG------SSVVMLSSAEQKFLEASM----AYVAGK---------PIMSDEEYDKLKQKLK 57 (211)
Q Consensus 2 s~eefd~lkeel~w-----eG------ssv~~l~~~Eq~fLeA~~----aY~~G~---------Pi~sD~efD~Lk~~Lk 57 (211)
.|.+.|.--+.+.| .| +.+++-...-.+|++++. +++ |. |+++++.||+++.-+
T Consensus 237 ~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~-g~~~~~~~~~gpli~~~~~~rv~~~i- 314 (469)
T 3sza_A 237 KNCDLDVACRRIAWGKFMNSGQTCVAPDYILCDPSIQNQIVEKLKKSLKEFY-GEDAKKSRDYGRIISARHFQRVMGLI- 314 (469)
T ss_dssp TTSCHHHHHHHHHHHHHGGGGCCTTSCCEEEECGGGHHHHHHHHHHHHHHHH-CSCGGGCTTCCCCSCHHHHHHHHHHH-
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCCCcEEEEehhHHHHHHHHHHHHHHHhc-CCCCcccCcccccCCHHHHHHHHHHH-
Confidence 34455565666666 34 334444444567887754 332 54 689999999999988
Q ss_pred hhCCeeeeeccc
Q 028248 58 MEGSEIVVEGPR 69 (211)
Q Consensus 58 ~~GS~vv~~~pr 69 (211)
+|.+++.-|.+
T Consensus 315 -~ga~v~~GG~~ 325 (469)
T 3sza_A 315 -EGQKVAYGGTG 325 (469)
T ss_dssp -TTSEEEECCCE
T ss_pred -cCCEEEeCCcc
Confidence 78888776543
No 170
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=30.26 E-value=12 Score=24.01 Aligned_cols=37 Identities=16% Similarity=0.341 Sum_probs=18.7
Q ss_pred CCCCCcccceeeccccccccCCCCcCceeCCCCCcee
Q 028248 158 PCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTM 194 (211)
Q Consensus 158 ~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L 194 (211)
.|+.|+.....--.-..-...-......+|+.|+...
T Consensus 16 ~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f 52 (72)
T 1x6e_A 16 GCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAF 52 (72)
T ss_dssp ECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEE
T ss_pred cCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCccc
Confidence 5999987654211000001111123457899998754
No 171
>3ty7_A Putative aldehyde dehydrogenase SAV2122; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.40A {Staphylococcus aureus}
Probab=29.99 E-value=1.3e+02 Score=27.32 Aligned_cols=65 Identities=20% Similarity=0.423 Sum_probs=42.7
Q ss_pred hHHHHhHHhhhcc-----cC------CeeEEeChhhHHHHHHHHh----hhcCC---------CccChHHHHHHHHHHh-
Q 028248 3 NEEFDNLKEELMW-----EG------SSVVMLSSAEQKFLEASMA----YVAGK---------PIMSDEEYDKLKQKLK- 57 (211)
Q Consensus 3 ~eefd~lkeel~w-----eG------ssv~~l~~~Eq~fLeA~~a----Y~~G~---------Pi~sD~efD~Lk~~Lk- 57 (211)
|.+.|.--+.+.| .| +.+++-...-.+|++++.+ ++-|. |+++.+.+++++.-+.
T Consensus 260 dADl~~Aa~~i~~~~~~~~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~v~~~i~~ 339 (478)
T 3ty7_A 260 DVDIKEAAKATTGKVVNNTGQVCTAGTRVLVPNKIKDAFLAELKEQFSQVRVGNPREDGTQVGPIISKKQFDQVQNYINK 339 (478)
T ss_dssp TSCHHHHHHHHHHHHHGGGGCCTTCCCEEEEETTTHHHHHHHHHHHHHTCCBSCTTSTTCCBCCCSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCCCccCCCeEEEcHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCcCHHHHHHHHHHHHH
Confidence 4455555555555 34 3344444555778888654 33343 7899999999998776
Q ss_pred --hhCCeeeeec
Q 028248 58 --MEGSEIVVEG 67 (211)
Q Consensus 58 --~~GS~vv~~~ 67 (211)
.+|.+++.-|
T Consensus 340 a~~~Ga~~~~gg 351 (478)
T 3ty7_A 340 GIEEGAELFYGG 351 (478)
T ss_dssp HHHHTCEEEECC
T ss_pred HHHCCCEEEecC
Confidence 4688888766
No 172
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=29.94 E-value=27 Score=24.63 Aligned_cols=34 Identities=21% Similarity=0.509 Sum_probs=22.4
Q ss_pred hhhccceeeecCCCCCcccceeeccccccccCCCCcCceeCCCCCcee
Q 028248 147 LIVRESLILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTM 194 (211)
Q Consensus 147 ~~~~d~liLkG~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L 194 (211)
.|..|..+ -.|..|+.++. +| .-++-|-+||..+
T Consensus 12 ~W~~d~~~--~~C~~C~~~Fs-~~-----------~RrHHCR~CG~v~ 45 (82)
T 2yw8_A 12 AWLKDDEA--THCRQCEKEFS-IS-----------RRKHHCRNCGHIF 45 (82)
T ss_dssp ---CCCCC--CBCTTTCCBCB-TT-----------BCCEECTTTCCEE
T ss_pred ccccCccC--CcccCcCCccc-Cc-----------cccccCCCCCCEE
Confidence 48877753 36999999844 42 5678899998754
No 173
>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH, oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A* 2o2r_A* 3rho_A* 3rhm_A* 3rhj_A* 3rhq_A* 3rhp_A* 3rhr_A* 3rhl_A*
Probab=29.76 E-value=1.1e+02 Score=28.37 Aligned_cols=68 Identities=18% Similarity=0.312 Sum_probs=44.5
Q ss_pred ChHHHHhHHhhhcc-----cC------CeeEEeChhhHHHHHHHHh----hhcCC---------CccChHHHHHHHHHHh
Q 028248 2 SNEEFDNLKEELMW-----EG------SSVVMLSSAEQKFLEASMA----YVAGK---------PIMSDEEYDKLKQKLK 57 (211)
Q Consensus 2 s~eefd~lkeel~w-----eG------ssv~~l~~~Eq~fLeA~~a----Y~~G~---------Pi~sD~efD~Lk~~Lk 57 (211)
.|.+.|.--+.+.| .| +.+++-...-.+|++++.+ ++-|. |+++.+.+|+++.-+.
T Consensus 299 ~dADl~~Aa~~i~~~~f~n~GQ~C~a~~rv~V~~~i~d~f~~~l~~~~~~~~vGdp~~~~~~~Gpli~~~~~~~v~~~i~ 378 (517)
T 2o2p_A 299 ADCDLNKAVQMGMSSVFFNKGENCIAAGRLFVEESIHNQFVQKVVEEVEKMKIGNPLERDTNHGPQNHEAHLRKLVEYCQ 378 (517)
T ss_dssp TTSCHHHHHHHHHHHHHGGGGCCTTCEEEEEEEHHHHHHHHHHHHHHHTTCCBSCTTSTTCCBCCCSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCcCCeEEEEeHHHHHHHHHHHHHHHHhcCCCCCCCCCCccCCCcCHHHHHHHHHHHH
Confidence 34555666666666 33 3334444445788888654 44454 5899999999998874
Q ss_pred ---hhCCeeeeeccc
Q 028248 58 ---MEGSEIVVEGPR 69 (211)
Q Consensus 58 ---~~GS~vv~~~pr 69 (211)
.+|.+++.-|.+
T Consensus 379 ~a~~~Ga~~~~gG~~ 393 (517)
T 2o2p_A 379 RGVKEGATLVCGGNQ 393 (517)
T ss_dssp HHHHTTCEEEECCSB
T ss_pred HHHHCCCEEEecccc
Confidence 468888876643
No 174
>4f3x_A Putative aldehyde dehydrogenase; structural genomics, protein structure initiative, nysgrc, P biology; HET: MSE NAD; 2.01A {Sinorhizobium meliloti} PDB: 4dal_A*
Probab=29.69 E-value=1.2e+02 Score=28.03 Aligned_cols=68 Identities=12% Similarity=0.219 Sum_probs=44.9
Q ss_pred ChHHHHhHHhhhcc-----cC------CeeEEeChhhHHHHHHHHh----hhcCC---------CccChHHHHHHHHHHh
Q 028248 2 SNEEFDNLKEELMW-----EG------SSVVMLSSAEQKFLEASMA----YVAGK---------PIMSDEEYDKLKQKLK 57 (211)
Q Consensus 2 s~eefd~lkeel~w-----eG------ssv~~l~~~Eq~fLeA~~a----Y~~G~---------Pi~sD~efD~Lk~~Lk 57 (211)
.|.+.|.--+.+.| .| +.+++-...-.+|++++.+ +.-|. |+++...+|+++.-+.
T Consensus 280 ~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~vG~p~d~~~~~Gpli~~~~~~~v~~~i~ 359 (498)
T 4f3x_A 280 GDADLEAVVNGIRTFGYYNAGQDCTAACRIYAEAGIYEKLVADLTSAVSTIRYNLDDDTENEIGPLISRRQRDRVASFVE 359 (498)
T ss_dssp TTSCHHHHHHHHHHHTTGGGGCSTTCEEEEEEETTTHHHHHHHHHHHHTTCCCSCSSGGGCSSCCCSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCccCCceEEecHHHHHHHHHHHHHHHHhcccCCCccccCccccCcCHHHHHHHHHHHH
Confidence 35556666666666 33 3344445555788888654 33453 6899999999998765
Q ss_pred ---hhCC-eeeeeccc
Q 028248 58 ---MEGS-EIVVEGPR 69 (211)
Q Consensus 58 ---~~GS-~vv~~~pr 69 (211)
.+|- +++.-|.+
T Consensus 360 ~a~~~Ga~~v~~gG~~ 375 (498)
T 4f3x_A 360 RAADQKHIEITTGGRT 375 (498)
T ss_dssp HHHHSTTCEEEECCSB
T ss_pred HHHHCCCCEEEECCcc
Confidence 5788 88776643
No 175
>3rh9_A Succinate-semialdehyde dehydrogenase (NAD(P)(+)); structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.63A {Marinobacter aquaeolei}
Probab=29.00 E-value=1.1e+02 Score=28.25 Aligned_cols=67 Identities=16% Similarity=0.411 Sum_probs=44.3
Q ss_pred hHHHHhHHhhhcc-----cC------CeeEEeChhhHHHHHHHH----hhhcCC---------CccChHHHHHHHHHHh-
Q 028248 3 NEEFDNLKEELMW-----EG------SSVVMLSSAEQKFLEASM----AYVAGK---------PIMSDEEYDKLKQKLK- 57 (211)
Q Consensus 3 ~eefd~lkeel~w-----eG------ssv~~l~~~Eq~fLeA~~----aY~~G~---------Pi~sD~efD~Lk~~Lk- 57 (211)
|.+.|.--+.+.| .| +.+++-...-.+|++++. +++-|. |+++.+.+|+++.-+.
T Consensus 268 dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~G~p~~~~~~~Gpli~~~~~~rv~~~i~~ 347 (506)
T 3rh9_A 268 DADLEAAADNLIANKFRGGGQTCVCANRIFVHEKVADAFGQKLAERVNKMTVGDGMNDGIDIGPLINKQGFDKVKRHLQD 347 (506)
T ss_dssp TSCHHHHHHHHHHHHHGGGGCSSSSCCEEEEETTTHHHHHHHHHHHHHHCCBSCTTSTTCSBCCCSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCCCcccCcEEEEcHHHHHHHHHHHHHHHHhccCCCCcccCCcccccCCHHHHHHHHHHHHH
Confidence 4455566666666 33 444555555677888754 355554 6899999999997765
Q ss_pred --hhCCeeeeeccc
Q 028248 58 --MEGSEIVVEGPR 69 (211)
Q Consensus 58 --~~GS~vv~~~pr 69 (211)
.+|.+++.-|.+
T Consensus 348 a~~~Ga~v~~gG~~ 361 (506)
T 3rh9_A 348 ALDKGASLVAGKQP 361 (506)
T ss_dssp HHHTTCEEEESCCG
T ss_pred HHHCCCEEEecCCc
Confidence 478888876643
No 176
>3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation, redox control, apoptosis, NAD binding, oxidoreductase, PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A
Probab=28.98 E-value=1.4e+02 Score=27.86 Aligned_cols=67 Identities=21% Similarity=0.482 Sum_probs=44.3
Q ss_pred ChHHHHhHHhhhcc-----cC------CeeEEeChhhHHHHHHHHh----hhcCC---------CccChHHHHHHHHHHh
Q 028248 2 SNEEFDNLKEELMW-----EG------SSVVMLSSAEQKFLEASMA----YVAGK---------PIMSDEEYDKLKQKLK 57 (211)
Q Consensus 2 s~eefd~lkeel~w-----eG------ssv~~l~~~Eq~fLeA~~a----Y~~G~---------Pi~sD~efD~Lk~~Lk 57 (211)
.|.+.|.--+.+.| .| +.+++-...-.+|++++.+ ++-|. |+++.+.+|+++.-+.
T Consensus 298 ~dADl~~Aa~~i~~~~f~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~vG~p~~~~~~~Gpli~~~~~~rv~~~i~ 377 (538)
T 3qan_A 298 RDADLDLAAESILVSAFGFSGQKCSAGSRAVIHKDVYDEVLEKTVALAKNLTVGDPTNRDNYMGPVIDEKAFEKIMSYIE 377 (538)
T ss_dssp TTSCHHHHHHHHHHHHHGGGGCSTTCCCEEEEETTTHHHHHHHHHHHHTTCCBSCTTSTTCSBCCCSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCccCceeEEehHHHHHHHHHHHHHHHhccCCCCCCCCCCCcCccCHHHHHHHHHHHH
Confidence 34556666666666 34 4455555556778887654 44454 6899999999998764
Q ss_pred ---hhCCeeeeeccc
Q 028248 58 ---MEGSEIVVEGPR 69 (211)
Q Consensus 58 ---~~GS~vv~~~pr 69 (211)
.+| +++.-|.+
T Consensus 378 ~a~~~G-~~~~gG~~ 391 (538)
T 3qan_A 378 IGKKEG-RLMTGGEG 391 (538)
T ss_dssp HHHHHS-EEEECCCE
T ss_pred HHHHCC-eEEeCCCc
Confidence 578 87776643
No 177
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=28.92 E-value=22 Score=27.61 Aligned_cols=33 Identities=18% Similarity=0.368 Sum_probs=23.0
Q ss_pred CCCCCcccceeeccccccccCCCCcCceeCCCCCceeEEec
Q 028248 158 PCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYDS 198 (211)
Q Consensus 158 ~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L~f~~ 198 (211)
-||.||......| +..+..-+|.+|+..+.=+.
T Consensus 129 ~~~~~g~~y~~~~--------~pp~~~~~~~~~~~~l~~r~ 161 (216)
T 3fb4_A 129 ICKTCGATYHTIF--------NPPAVEGICDKDGGELYQRI 161 (216)
T ss_dssp EETTTCCEEETTT--------BCCSSTTBCTTTCCBEECCG
T ss_pred CCCccCCcccccc--------CCCCcccccccccCccccCC
Confidence 4999999765443 22455668999998876544
No 178
>3ed6_A Betaine aldehyde dehydrogenase; structural genomics, infecti deseases, NAD, oxidoreductase, PSI; 1.70A {Staphylococcus aureus} PDB: 3fg0_A*
Probab=28.92 E-value=1.4e+02 Score=27.66 Aligned_cols=68 Identities=26% Similarity=0.497 Sum_probs=43.7
Q ss_pred ChHHHHhHHhhhcc-----cC------CeeEEeChhhHHHHHHHHh----hhcCC---------CccChHHHHHHHHHHh
Q 028248 2 SNEEFDNLKEELMW-----EG------SSVVMLSSAEQKFLEASMA----YVAGK---------PIMSDEEYDKLKQKLK 57 (211)
Q Consensus 2 s~eefd~lkeel~w-----eG------ssv~~l~~~Eq~fLeA~~a----Y~~G~---------Pi~sD~efD~Lk~~Lk 57 (211)
.|.+.|.--+.+.| .| +.+++-...-.+|++++.+ +.-|. |+++.+.+|+++.-+.
T Consensus 290 ~dADl~~Aa~~i~~~~f~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~l~vG~p~d~~~~~Gpli~~~~~~~v~~~i~ 369 (520)
T 3ed6_A 290 DDADFELAVDQALNGGYFHAGQVCSAGSRILVQNSIKDKFEQALIDRVKKIKLGNGFDADTEMGPVISTEHRNKIESYMD 369 (520)
T ss_dssp TTSCHHHHHHHHHHHHHGGGGTSTTCCCEEEEEHHHHHHHHHHHHHHHTTCCBCCTTSTTCSBCCCSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCcccCceEEEcHHHHHHHHHHHHHHHHhccCCCCccCCCcccccCCHHHHHHHHHHHH
Confidence 34455555566665 33 4444444445678887654 44454 6799999999988664
Q ss_pred ---hhCCeeeeeccc
Q 028248 58 ---MEGSEIVVEGPR 69 (211)
Q Consensus 58 ---~~GS~vv~~~pr 69 (211)
.+|.+++.-|.+
T Consensus 370 ~a~~~Ga~v~~gG~~ 384 (520)
T 3ed6_A 370 VAKAEGATIAVGGKR 384 (520)
T ss_dssp HHHHTTCEEEECCSC
T ss_pred HHHhCCCEEEeCCCc
Confidence 468888876643
No 179
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=28.75 E-value=22 Score=24.69 Aligned_cols=36 Identities=17% Similarity=0.457 Sum_probs=22.3
Q ss_pred ecCCCCCcccceeeccccccccCCCCcC--ceeCCCCCceeE
Q 028248 156 KGPCPNCGTENVSFFGTILSISSGGTTN--TINCSNCGTTMV 195 (211)
Q Consensus 156 kG~CPnCg~Ev~aFfg~i~~v~s~~~~~--~~kC~~C~~~L~ 195 (211)
...|+.|++.+..-+ +. ..+..=| =.+|..|+..|.
T Consensus 25 ~~~C~~C~~~I~~~~--~~--a~~~~~H~~CF~C~~C~~~L~ 62 (89)
T 1x64_A 25 MPLCDKCGSGIVGAV--VK--ARDKYRHPECFVCADCNLNLK 62 (89)
T ss_dssp CCBCTTTCCBCCSCC--EE--SSSCEECTTTCCCSSSCCCTT
T ss_pred CCCcccCCCEecccE--EE--ECCceECccCCEecCCCCCCC
Confidence 456999999998532 21 1222223 257899988874
No 180
>2ve5_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP complex, oxidoreductase; HET: NAP CSO; 2.10A {Pseudomonas aeruginosa} PDB: 2wme_A* 2wox_A* 3zqa_A* 2xdr_A*
Probab=28.64 E-value=1.6e+02 Score=26.79 Aligned_cols=67 Identities=16% Similarity=0.337 Sum_probs=42.4
Q ss_pred hHHHHhHHhhhcc-----cC------CeeEEeChhhHHHHHHHHh----hhcCC---------CccChHHHHHHHHHH--
Q 028248 3 NEEFDNLKEELMW-----EG------SSVVMLSSAEQKFLEASMA----YVAGK---------PIMSDEEYDKLKQKL-- 56 (211)
Q Consensus 3 ~eefd~lkeel~w-----eG------ssv~~l~~~Eq~fLeA~~a----Y~~G~---------Pi~sD~efD~Lk~~L-- 56 (211)
|.+.|.--+.+.| .| +.+++-...-.+|++++.+ ++-|. |+++.+.+|+++.-+
T Consensus 264 dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~g~p~d~~~~~gpli~~~~~~~v~~~i~~ 343 (490)
T 2ve5_A 264 DADLDRAADIAVMANFFSSGQVCTNGTRVFIHRSQQARFEAKVLERVQRIRLGDPQDENTNFGPLVSFPHMESVLGYIES 343 (490)
T ss_dssp TSCHHHHHHHHHHHHHGGGGCCTTCCCEEEEEGGGHHHHHHHHHHHHHTCCBSCTTSTTCCBCCCSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCccCCCeEEEcHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCCHHHHHHHHHHHHH
Confidence 4455555555555 34 3344444445678887654 44343 689999999998765
Q ss_pred -hhhCCeeeeeccc
Q 028248 57 -KMEGSEIVVEGPR 69 (211)
Q Consensus 57 -k~~GS~vv~~~pr 69 (211)
+.+|.+++.-|.+
T Consensus 344 a~~~Ga~~~~gG~~ 357 (490)
T 2ve5_A 344 GKAQKARLLCGGER 357 (490)
T ss_dssp HHHTTCEEEECCSB
T ss_pred HHHCCCEEEeCCcc
Confidence 4568888776543
No 181
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.59 E-value=43 Score=22.78 Aligned_cols=36 Identities=25% Similarity=0.457 Sum_probs=23.4
Q ss_pred ecCCCCCcccceeeccccccccCCCCcCc--eeCCCCCceeE
Q 028248 156 KGPCPNCGTENVSFFGTILSISSGGTTNT--INCSNCGTTMV 195 (211)
Q Consensus 156 kG~CPnCg~Ev~aFfg~i~~v~s~~~~~~--~kC~~C~~~L~ 195 (211)
...|+.|++.+. +.... ..+..-|. .+|+.|++.|.
T Consensus 15 ~~~C~~C~~~I~---~~~v~-a~~~~~H~~CF~C~~C~~~L~ 52 (79)
T 2cor_A 15 KYICQKCHAIID---EQPLI-FKNDPYHPDHFNCANCGKELT 52 (79)
T ss_dssp CCBCTTTCCBCC---SCCCC-CSSSCCCTTTSBCSSSCCBCC
T ss_pred CCCCccCCCEec---ceEEE-ECcceeCCCCCEeCCCCCccC
Confidence 356999999998 33221 22223333 68999999886
No 182
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=28.56 E-value=12 Score=36.41 Aligned_cols=31 Identities=26% Similarity=0.618 Sum_probs=0.4
Q ss_pred ecCCCCCcccceeeccccccccCCCCcCceeCCC---CCceeE
Q 028248 156 KGPCPNCGTENVSFFGTILSISSGGTTNTINCSN---CGTTMV 195 (211)
Q Consensus 156 kG~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~---C~~~L~ 195 (211)
--.||.||.++.-- ....+...|+| |..++.
T Consensus 415 P~~CP~Cgs~l~~~---------~~~~~~~rC~n~~~CpaQ~~ 448 (615)
T 3sgi_A 415 PTTCPECGSPLAPE---------KEGDADIRCPNARGCPGQLR 448 (615)
T ss_dssp C------------------------------------------
T ss_pred CCCCCCCCCeeeec---------CCCCEEEEcCCCCCCHHHHH
Confidence 34599999886421 01234578876 665543
No 183
>2d4e_A 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; HPCC; HET: NAD; 2.10A {Thermus thermophilus}
Probab=28.54 E-value=1.1e+02 Score=28.30 Aligned_cols=67 Identities=16% Similarity=0.429 Sum_probs=44.0
Q ss_pred hHHHHhHHhhhcc-----cC------CeeEEeChhhHHHHHHHHh----hhcCC---------CccChHHHHHHHHHHh-
Q 028248 3 NEEFDNLKEELMW-----EG------SSVVMLSSAEQKFLEASMA----YVAGK---------PIMSDEEYDKLKQKLK- 57 (211)
Q Consensus 3 ~eefd~lkeel~w-----eG------ssv~~l~~~Eq~fLeA~~a----Y~~G~---------Pi~sD~efD~Lk~~Lk- 57 (211)
|.+.|.--+.+.| .| +.+++-...-.+|++++.+ ++-|. |+++.+.+|+++.-+.
T Consensus 283 dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~rv~~~i~~ 362 (515)
T 2d4e_A 283 DADLERALDAVVFQIFSFNGERCTASSRLLVEEKIFEDFVGKVVERARAIRVGHPLDPETEVGPLIHPEHLQRVLGYVEA 362 (515)
T ss_dssp TSCHHHHHHHHHHHHHGGGGCSTTCCCEEEEEHHHHHHHHHHHHHHHHHCCBCCTTSTTCSBCCCSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCCeEEEEehhHHHHHHHHHHHHHhhcccCCcccccCccCCCcCHHHHHHHHHHHHH
Confidence 4455666666666 34 3444444445778888643 44453 6899999999998774
Q ss_pred --hhCCeeeeeccc
Q 028248 58 --MEGSEIVVEGPR 69 (211)
Q Consensus 58 --~~GS~vv~~~pr 69 (211)
.+|.+++.-|.+
T Consensus 363 a~~~Ga~~~~gG~~ 376 (515)
T 2d4e_A 363 GKREGARLLVGGER 376 (515)
T ss_dssp HHHTTCEEEECCSB
T ss_pred HHHCCCEEEeCCcc
Confidence 568888876643
No 184
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1
Probab=28.52 E-value=37 Score=24.87 Aligned_cols=39 Identities=21% Similarity=0.474 Sum_probs=26.0
Q ss_pred eeecCCCCCcccceeeccccccccCCCCcCceeCCCCCceeEEec
Q 028248 154 ILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYDS 198 (211)
Q Consensus 154 iLkG~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L~f~~ 198 (211)
...=||| ||.. |.+-...+ +. ...-+.|+.|.-.+.+.-
T Consensus 28 ~y~y~Cr-CGd~-F~it~edL--~~--ge~iv~C~sCSL~I~V~~ 66 (83)
T 1wge_A 28 TYFYPCP-CGDN-FAITKEDL--EN--GEDVATCPSCSLIIKVIY 66 (83)
T ss_dssp EEEECCS-SSSC-EEEEHHHH--HT--TCCEEECTTTCCEEEEEC
T ss_pred EEEEeCC-CCCE-EEECHHHH--hC--CCEEEECCCCceEEEEEe
Confidence 5778999 9987 44433333 22 235699999998776654
No 185
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=28.46 E-value=12 Score=29.43 Aligned_cols=36 Identities=33% Similarity=0.719 Sum_probs=0.0
Q ss_pred ecCCCCCcccceeeccccccccCC--CCcCceeCCCCCce
Q 028248 156 KGPCPNCGTENVSFFGTILSISSG--GTTNTINCSNCGTT 193 (211)
Q Consensus 156 kG~CPnCg~Ev~aFfg~i~~v~s~--~~~~~~kC~~C~~~ 193 (211)
.-+||+||..--.||-. -..|. .-+--.+|.+||-.
T Consensus 92 ~~~CpkCg~~~a~f~q~--Q~RsaDE~mT~fy~C~~C~~~ 129 (133)
T 3qt1_I 92 DRECPKCHSRENVFFQL--QIRSADEPMTTFYKCVNCGHR 129 (133)
T ss_dssp ----------------------------------------
T ss_pred cCCCCCCCCceEEEEEE--eeecCCCCCcEEEEcCCCCCE
Confidence 45899999887777622 11222 23445679888753
No 186
>2l3n_A DNA-binding protein RAP1, telomere length regulat; TAZ1; NMR {Schizosaccharomyces pombe}
Probab=28.45 E-value=21 Score=26.72 Aligned_cols=13 Identities=54% Similarity=0.672 Sum_probs=10.6
Q ss_pred ChhhHHHHHHHHh
Q 028248 24 SSAEQKFLEASMA 36 (211)
Q Consensus 24 ~~~Eq~fLeA~~a 36 (211)
+..||+||||+.+
T Consensus 26 nsteqqfleames 38 (104)
T 2l3n_A 26 NSTEQQFLEAMES 38 (104)
T ss_dssp TCCHHHHHHHHHH
T ss_pred cchHHHHHHHHHh
Confidence 4569999999865
No 187
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=28.42 E-value=30 Score=24.55 Aligned_cols=34 Identities=21% Similarity=0.473 Sum_probs=23.5
Q ss_pred hhhccceeeecCCCCCcccceeeccccccccCCCCcCceeCCCCCcee
Q 028248 147 LIVRESLILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTM 194 (211)
Q Consensus 147 ~~~~d~liLkG~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L 194 (211)
.|..|.. .-.|..|+.++ ++| .-++-|.+||..+
T Consensus 14 ~W~pd~~--~~~C~~C~~~F-s~~-----------~RrHHCR~CG~v~ 47 (84)
T 1z2q_A 14 YWQEDED--APACNGCGCVF-TTT-----------VRRHHCRNCGYVL 47 (84)
T ss_dssp CCCCTTT--CCBCTTTCCBC-CTT-----------SCCEECTTTCCEE
T ss_pred ccccCCC--CCCCcCcCCcc-ccc-----------hhcccccCCCcEE
Confidence 4666654 24799999993 442 5578888888754
No 188
>3uq8_A DNA ligase; adenylated protein, ATP-grAsp, rossman fold, adenylation; HET: DNA NAD AMP; 1.70A {Haemophilus influenzae} PDB: 3pn1_A* 3bac_A*
Probab=28.35 E-value=20 Score=32.08 Aligned_cols=14 Identities=29% Similarity=0.560 Sum_probs=12.1
Q ss_pred CChHHHHhHHhhhc
Q 028248 1 MSNEEFDNLKEELM 14 (211)
Q Consensus 1 ~s~eefd~lkeel~ 14 (211)
+||+|||.|..||.
T Consensus 28 IsD~eYD~L~~eL~ 41 (322)
T 3uq8_A 28 VPDSEYDRLFHQLK 41 (322)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 69999999988873
No 189
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.25 E-value=22 Score=23.38 Aligned_cols=35 Identities=14% Similarity=0.462 Sum_probs=21.6
Q ss_pred cCCCCCcccceeeccccccccCCCCcC--ceeCCCCCceeE
Q 028248 157 GPCPNCGTENVSFFGTILSISSGGTTN--TINCSNCGTTMV 195 (211)
Q Consensus 157 G~CPnCg~Ev~aFfg~i~~v~s~~~~~--~~kC~~C~~~L~ 195 (211)
..|+.|++.+..- .... .+..-| =.+|..|++.|.
T Consensus 6 ~~C~~C~~~I~~~---~~~a-~~~~~H~~CF~C~~C~~~L~ 42 (70)
T 2d8x_A 6 SGCHQCGEFIIGR---VIKA-MNNSWHPECFRCDLCQEVLA 42 (70)
T ss_dssp SBCSSSCCBCCSC---CEEE-TTEEECTTTSBCSSSCCBCS
T ss_pred CcCccCCCEecce---EEEE-CcccccccCCEeCCCCCcCC
Confidence 3699999998742 2211 112222 368899998875
No 190
>3vc8_A RNA-directed RNA polymerase; NEW fold, HOST membrane, multi-PASS membrane protein, cytopl hydrolase, viral protein; 2.00A {Murine hepatitis virus} PDB: 3vcb_A
Probab=27.93 E-value=1.3e+02 Score=22.75 Aligned_cols=62 Identities=23% Similarity=0.481 Sum_probs=39.2
Q ss_pred ChHHHHhHHhhhcccCCeeEEeChhhHHHHHH--HHhhhcCCCccChHHHHHH------HH--HHh-hhCCeeeeeccce
Q 028248 2 SNEEFDNLKEELMWEGSSVVMLSSAEQKFLEA--SMAYVAGKPIMSDEEYDKL------KQ--KLK-MEGSEIVVEGPRC 70 (211)
Q Consensus 2 s~eefd~lkeel~weGssv~~l~~~Eq~fLeA--~~aY~~G~Pi~sD~efD~L------k~--~Lk-~~GS~vv~~~prC 70 (211)
+++.|-+|+.++. +.+=+++|.. ...||+|. |++++|+.- |+ .-+ ..|.+|.-.-|+|
T Consensus 18 d~~~Y~kL~nsis---------~~~~~~Yla~yNKYKYySGs--~~~adYr~Ac~ahLAkAl~~fs~~~g~dvLYtPP~~ 86 (94)
T 3vc8_A 18 TKESYCKLKNSVS---------DVAFNRYLSLYNKYRYFSGK--MDTAAYREAACSQLAKAMETFNHNNGNDVLYQPPTA 86 (94)
T ss_dssp CHHHHHHHHHHSC---------HHHHHHHHHTHHHHHTCCSC--CCHHHHHHHHHHHHHHHHHHHHHHCSCCEEECCSCC
T ss_pred ccHHHHHHHhhcC---------HHHHHHHHHHHHhhccccCC--cchHHHHHHHHHHHHHHHHHhhhcCCCceeeCCCcc
Confidence 4567777777631 2223567665 45699996 899999853 22 334 5688888889999
Q ss_pred eecC
Q 028248 71 SLRS 74 (211)
Q Consensus 71 slr~ 74 (211)
|+-+
T Consensus 87 Sv~s 90 (94)
T 3vc8_A 87 SVTT 90 (94)
T ss_dssp ----
T ss_pred eeeh
Confidence 9865
No 191
>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}
Probab=27.71 E-value=31 Score=25.70 Aligned_cols=39 Identities=23% Similarity=0.484 Sum_probs=25.8
Q ss_pred eeecCCCCCcccceeeccccccccCCCCcCceeCCCCCceeEEec
Q 028248 154 ILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYDS 198 (211)
Q Consensus 154 iLkG~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L~f~~ 198 (211)
...=||| ||.. |.+-...+ +. ...-+.|+.|.-.+.+.-
T Consensus 21 ~y~ypCr-CGd~-F~IteedL--e~--ge~iv~C~sCSL~IkV~y 59 (89)
T 2jr7_A 21 TYFYPCP-CGDN-FSITKEDL--EN--GEDVATCPSCSLIIKVIY 59 (89)
T ss_dssp EEEEECT-TSSE-EEEEHHHH--HH--TCCEEECTTTCCEEEEEC
T ss_pred EEEEcCC-CCCE-EEECHHHH--hC--CCEEEECCCCccEEEEEE
Confidence 4678999 9987 44433333 22 124699999998776654
No 192
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=27.64 E-value=52 Score=24.08 Aligned_cols=11 Identities=27% Similarity=0.528 Sum_probs=7.3
Q ss_pred cCCCCCcccce
Q 028248 157 GPCPNCGTENV 167 (211)
Q Consensus 157 G~CPnCg~Ev~ 167 (211)
..||.|+.|+.
T Consensus 3 ~~CP~C~~~l~ 13 (81)
T 2jrp_A 3 ITCPVCHHALE 13 (81)
T ss_dssp CCCSSSCSCCE
T ss_pred CCCCCCCCccc
Confidence 35777777754
No 193
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.48 E-value=23 Score=23.85 Aligned_cols=35 Identities=14% Similarity=0.327 Sum_probs=22.2
Q ss_pred cCCCCCcccceeeccccccccCCCCc--CceeCCCCCceeE
Q 028248 157 GPCPNCGTENVSFFGTILSISSGGTT--NTINCSNCGTTMV 195 (211)
Q Consensus 157 G~CPnCg~Ev~aFfg~i~~v~s~~~~--~~~kC~~C~~~L~ 195 (211)
..|+.|++.+..- .+. ..+..- +=.+|+.|+..|.
T Consensus 16 ~~C~~C~~~I~~~--~v~--a~~~~~H~~CF~C~~C~~~L~ 52 (80)
T 1x3h_A 16 PKCGGCNRPVLEN--YLS--AMDTVWHPECFVCGDCFTSFS 52 (80)
T ss_dssp CBCTTTCCBCCSS--CEE--ETTEEECTTTCBCSSSCCBSC
T ss_pred CccccCCCeecce--eEE--ECCCeEecCcCChhhCCCCCC
Confidence 4699999999852 121 112222 2367899999885
No 194
>1zau_A DNA ligase; AMP; HET: DNA AMP; 3.15A {Mycobacterium tuberculosis}
Probab=27.29 E-value=22 Score=31.89 Aligned_cols=14 Identities=43% Similarity=0.662 Sum_probs=12.5
Q ss_pred CChHHHHhHHhhhc
Q 028248 1 MSNEEFDNLKEELM 14 (211)
Q Consensus 1 ~s~eefd~lkeel~ 14 (211)
+||+|||.|..||.
T Consensus 39 IsD~eYD~L~~eL~ 52 (328)
T 1zau_A 39 ISDAEFDELLRRLE 52 (328)
T ss_dssp SCTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 69999999999974
No 195
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=27.26 E-value=31 Score=24.60 Aligned_cols=18 Identities=44% Similarity=0.903 Sum_probs=12.3
Q ss_pred cCceeCCCCCceeEEecC
Q 028248 182 TNTINCSNCGTTMVYDSN 199 (211)
Q Consensus 182 ~~~~kC~~C~~~L~f~~~ 199 (211)
...+.|++||+..+++.+
T Consensus 7 ~~~~~CP~Cgkp~~W~~~ 24 (68)
T 1lv3_A 7 TITVNCPTCGKTVVWGEI 24 (68)
T ss_dssp CCEEECTTTCCEEECSSS
T ss_pred CCcCcCCCCCCccccccc
Confidence 345678888888776643
No 196
>3u4j_A NAD-dependent aldehyde dehydrogenase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, tetramer; 2.00A {Sinorhizobium meliloti}
Probab=27.11 E-value=1e+02 Score=28.63 Aligned_cols=67 Identities=15% Similarity=0.403 Sum_probs=43.8
Q ss_pred ChHHHHhHHhhhcc-----cC------CeeEEeChhhHHHHHHHH----hhhcCC---------CccChHHHHHHHHHH-
Q 028248 2 SNEEFDNLKEELMW-----EG------SSVVMLSSAEQKFLEASM----AYVAGK---------PIMSDEEYDKLKQKL- 56 (211)
Q Consensus 2 s~eefd~lkeel~w-----eG------ssv~~l~~~Eq~fLeA~~----aY~~G~---------Pi~sD~efD~Lk~~L- 56 (211)
.|.+.|.--+.+.| .| +.+++-...-.+|++++. +++-|. |+++.+.+|+++.-+
T Consensus 281 ~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~G~p~~~~~~~Gpli~~~~~~rv~~~i~ 360 (528)
T 3u4j_A 281 ADADLDAAADGIAYGVYHNAGQCCISGSRLLVQEGIRDALMERLLDISRKVAFGDPLNERTKIGAMISEAHAEKVHSYVT 360 (528)
T ss_dssp TTSCHHHHHHHHHHHHHGGGGCCTTCEEEEEEEGGGHHHHHHHHHHHHHHCCEECTTSTTCSBCCCSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhcCCCCCcCCCEEEEechHHHHHHHHHHHHHHhhcCCCCCCcCCccCCccCHHHHHHHHHHHH
Confidence 34556666666666 34 334444444567887764 344443 689999999999877
Q ss_pred --hhhCCeeeeecc
Q 028248 57 --KMEGSEIVVEGP 68 (211)
Q Consensus 57 --k~~GS~vv~~~p 68 (211)
+.+|-+++.-|.
T Consensus 361 ~a~~~Ga~v~~gG~ 374 (528)
T 3u4j_A 361 AGITSGAELLLGGE 374 (528)
T ss_dssp HHHHTTCEEEECCS
T ss_pred HHHHCCCEEEeCCC
Confidence 557888887664
No 197
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.03 E-value=41 Score=23.04 Aligned_cols=36 Identities=22% Similarity=0.426 Sum_probs=22.0
Q ss_pred cCCCCCcccceeeccccccccCCCCcCc--eeCCCCCceeE
Q 028248 157 GPCPNCGTENVSFFGTILSISSGGTTNT--INCSNCGTTMV 195 (211)
Q Consensus 157 G~CPnCg~Ev~aFfg~i~~v~s~~~~~~--~kC~~C~~~L~ 195 (211)
..|+.|++.|+. +..+. ..+..-|. .+|..|++.|.
T Consensus 16 ~~C~~C~~~I~~--~e~v~-a~~~~wH~~CF~C~~C~~~L~ 53 (82)
T 2co8_A 16 DLCALCGEHLYV--LERLC-VNGHFFHRSCFRCHTCEATLW 53 (82)
T ss_dssp CBCSSSCCBCCT--TTBCC-BTTBCCBTTTCBCSSSCCBCC
T ss_pred CCCcccCCCccc--ceEEE-ECCCeeCCCcCEEcCCCCCcC
Confidence 469999999862 11111 22223333 68899998874
No 198
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.95 E-value=21 Score=23.35 Aligned_cols=35 Identities=14% Similarity=0.372 Sum_probs=21.6
Q ss_pred cCCCCCcccceeeccccccccCCCCcC--ceeCCCCCceeE
Q 028248 157 GPCPNCGTENVSFFGTILSISSGGTTN--TINCSNCGTTMV 195 (211)
Q Consensus 157 G~CPnCg~Ev~aFfg~i~~v~s~~~~~--~~kC~~C~~~L~ 195 (211)
..|+.|++.+.. .... ..+..-| =.+|..|+..|.
T Consensus 6 ~~C~~C~~~I~~---~~~~-a~~~~~H~~CF~C~~C~~~L~ 42 (69)
T 2cur_A 6 SGCVKCNKAITS---GGIT-YQDQPWHADCFVCVTCSKKLA 42 (69)
T ss_dssp CCCSSSCCCCCT---TCEE-ETTEEECTTTTBCTTTCCBCT
T ss_pred CCCcccCCEeCc---ceEE-ECccccccCcCEECCCCCCCC
Confidence 469999999863 2221 1122222 257899999884
No 199
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=26.82 E-value=37 Score=28.54 Aligned_cols=38 Identities=16% Similarity=0.142 Sum_probs=22.7
Q ss_pred CC--CCCcccceeeccccccccCCCCcCceeCCCCCce--eEEec
Q 028248 158 PC--PNCGTENVSFFGTILSISSGGTTNTINCSNCGTT--MVYDS 198 (211)
Q Consensus 158 ~C--PnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~--L~f~~ 198 (211)
.| +.||.++...+.. ...++-+.-.+|+.|+.. +....
T Consensus 143 ~C~~~~C~~~~~~~~~~---~~~~~~~~P~~Cp~C~~~~~~~l~~ 184 (268)
T 2vl6_A 143 KHIHPDCMQEFEWPEDE---EMPEVLEMPTICPKCGKPGQFRLIP 184 (268)
T ss_dssp EEECTTCCCEEESSTTS---CCCTTCCCCSBCTTTCCBCEEEECG
T ss_pred ECCCCCCCCEEeeeecc---cCCCcccCCccCCCCCCCCCEEEec
Confidence 79 9999876544200 122333444689999984 44443
No 200
>1b04_A Protein (DNA ligase); DNA replication; 2.80A {Geobacillus stearothermophilus} SCOP: d.142.2.2
Probab=26.76 E-value=22 Score=31.72 Aligned_cols=14 Identities=36% Similarity=0.769 Sum_probs=12.6
Q ss_pred CChHHHHhHHhhhc
Q 028248 1 MSNEEFDNLKEELM 14 (211)
Q Consensus 1 ~s~eefd~lkeel~ 14 (211)
+||+|||.|..||.
T Consensus 32 IsD~eYD~L~~eL~ 45 (318)
T 1b04_A 32 VPDAEYDRLMQELI 45 (318)
T ss_dssp SSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 69999999999875
No 201
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.69 E-value=29 Score=23.25 Aligned_cols=35 Identities=14% Similarity=0.350 Sum_probs=21.9
Q ss_pred cCCCCCcccceeeccccccccCCCCcC--ceeCCCCCceeE
Q 028248 157 GPCPNCGTENVSFFGTILSISSGGTTN--TINCSNCGTTMV 195 (211)
Q Consensus 157 G~CPnCg~Ev~aFfg~i~~v~s~~~~~--~~kC~~C~~~L~ 195 (211)
..|+.|++.+..= ... ..+..-| =.+|..|++.|.
T Consensus 16 ~~C~~C~~~I~~~---~v~-a~~~~~H~~CF~C~~C~~~L~ 52 (80)
T 2cuq_A 16 PRCARCSKTLTQG---GVT-YRDQPWHRECLVCTGCQTPLA 52 (80)
T ss_dssp CCCTTTCCCCCSC---CEE-SSSSEECTTTCBCSSSCCBCT
T ss_pred CcCCCCCCEecCc---EEE-ECCchhhhhhCCcccCCCcCC
Confidence 4699999998742 221 2222222 267899999983
No 202
>3ek1_A Aldehyde dehydrogenase; ssgcid, oxidoreductase, structural genomics; HET: MES; 2.10A {Brucella melitensis biovar ABORTUS2308}
Probab=26.67 E-value=1.2e+02 Score=27.98 Aligned_cols=68 Identities=19% Similarity=0.417 Sum_probs=43.4
Q ss_pred ChHHHHhHHhhhcc-----cCC------eeEEeChhhHHHHHHHHh----hhcCC---------CccChHHHHHHHHHHh
Q 028248 2 SNEEFDNLKEELMW-----EGS------SVVMLSSAEQKFLEASMA----YVAGK---------PIMSDEEYDKLKQKLK 57 (211)
Q Consensus 2 s~eefd~lkeel~w-----eGs------sv~~l~~~Eq~fLeA~~a----Y~~G~---------Pi~sD~efD~Lk~~Lk 57 (211)
.|.+.|.--+.+.| .|- .+++-...-.+|++++.+ +.-|. |+++.+.+|+++.-+.
T Consensus 288 ~dADl~~Aa~~i~~~~f~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~G~p~~~~~~~Gpli~~~~~~~v~~~i~ 367 (504)
T 3ek1_A 288 DDADLDAAVDGAMVSKYRNAGQTCVCANRIYVQRGVYDKFAEKLAAKVKELKVGNGTEPGVVIGPMIEEKAITKVKAHIE 367 (504)
T ss_dssp TTSCHHHHHHHHHHHHHGGGGCSTTSEEEEEEEHHHHHHHHHHHHHHHHTCCBSCTTSTTCCBCCCSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCCCCEEEEehhHHHHHHHHHHHHHhhcccCCCccccCccccccCHHHHHHHHHHHH
Confidence 34555666666666 343 334434445678887654 33343 6899999999988765
Q ss_pred ---hhCCeeeeeccc
Q 028248 58 ---MEGSEIVVEGPR 69 (211)
Q Consensus 58 ---~~GS~vv~~~pr 69 (211)
.+|.+++.-|.+
T Consensus 368 ~a~~~Ga~v~~gG~~ 382 (504)
T 3ek1_A 368 DAVSKGAKLITGGKE 382 (504)
T ss_dssp HHHHTTCEEEECCCE
T ss_pred HHHHCCCEEEeCCcc
Confidence 478888876654
No 203
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=26.57 E-value=23 Score=34.33 Aligned_cols=43 Identities=23% Similarity=0.600 Sum_probs=23.0
Q ss_pred eecCCCCCcccceeecccccccc----CCCCcCceeCCCCCceeEEecC
Q 028248 155 LKGPCPNCGTENVSFFGTILSIS----SGGTTNTINCSNCGTTMVYDSN 199 (211)
Q Consensus 155 LkG~CPnCg~Ev~aFfg~i~~v~----s~~~~~~~kC~~C~~~L~f~~~ 199 (211)
++|.||.||.+- -+|+..-.. .+..-..-.|..||++++++..
T Consensus 139 v~gtcP~c~~~~--~~Gd~c~~~G~~l~~~~l~~p~~~r~g~~v~~~~~ 185 (722)
T 1rqg_A 139 VIGTCPYCGAED--QKGDQCEVCGRPLTPEILINPRCAICGRPISFRDS 185 (722)
T ss_dssp CCSBCSSSCCSC--CCTTTCSSSCCCCCTTSSBSCBCTTTCCBCEEEEE
T ss_pred cccccCccCCcc--CCcchhhhcccccChhhccCCcccCCCcEeEEEEe
Confidence 367899999862 223321000 0011112358888888888763
No 204
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=26.45 E-value=33 Score=26.53 Aligned_cols=32 Identities=19% Similarity=0.425 Sum_probs=19.1
Q ss_pred hhccceeeecCCCCCcccceeeccccccccCCCCcCceeCCCCCce
Q 028248 148 IVRESLILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTT 193 (211)
Q Consensus 148 ~~~d~liLkG~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~ 193 (211)
|..|..+ ..|.+|+.++. +| +-++-|-+||..
T Consensus 13 ~~Pd~~~--~~C~~C~~~Fs-~~-----------~RkHHCR~CG~i 44 (120)
T 1y02_A 13 PSPTGLE--PSCKSCGAHFA-NT-----------ARKQTCLDCKKN 44 (120)
T ss_dssp ---------CCCTTTCCCCS-SG-----------GGCEECTTTCCE
T ss_pred CcCcccc--CcccCcCCccc-cc-----------cccccCCCCCCe
Confidence 4455553 58999999843 43 567889999865
No 205
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=26.43 E-value=32 Score=28.48 Aligned_cols=28 Identities=14% Similarity=0.312 Sum_probs=18.9
Q ss_pred eeecCCCCCcccceeeccccccccCCCCcCceeCCCCCce
Q 028248 154 ILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTT 193 (211)
Q Consensus 154 iLkG~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~ 193 (211)
.+...|++ |....-- +-++.+|++||..
T Consensus 167 Vv~A~c~~-g~~m~~~-----------~~~~m~cp~cg~~ 194 (209)
T 2nn6_I 167 VVVAHSES-GIQMVPI-----------SWCEMQCPKTHTK 194 (209)
T ss_dssp ECCCBCSS-SCBCEEE-----------ETTEEECTTTTCC
T ss_pred EEEEEcCC-CCEEEEc-----------cCCEEECCCCCCE
Confidence 46677888 6444322 3478999999964
No 206
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=26.40 E-value=18 Score=22.54 Aligned_cols=36 Identities=11% Similarity=0.259 Sum_probs=19.3
Q ss_pred CCCCCcccceeec---cccccccCCCCcCceeCCCCCcee
Q 028248 158 PCPNCGTENVSFF---GTILSISSGGTTNTINCSNCGTTM 194 (211)
Q Consensus 158 ~CPnCg~Ev~aFf---g~i~~v~s~~~~~~~kC~~C~~~L 194 (211)
.|+.||.....-- .-+...- .......+|+.|+...
T Consensus 12 ~C~~C~k~f~~~~~l~~H~~~~H-~~~~~~~~C~~C~k~f 50 (66)
T 2drp_A 12 RCKVCSRVYTHISNFCRHYVTSH-KRNVKVYPCPFCFKEF 50 (66)
T ss_dssp ECTTTCCEESSHHHHHHHHHHHS-SSSCCCEECTTTCCEE
T ss_pred ECCCCcchhCCHHHHHHHHHHHc-CCCCcCeECCCCCCcc
Confidence 5999997654221 0111100 0133458999999764
No 207
>3jsl_A DNA ligase; NAD+-dependent, DNA damage, DNA repair, DNA replication, magnesium, manganese, metal-binding, NAD, zinc; HET: DNA; 1.80A {Staphylococcus aureus} SCOP: d.142.2.2 PDB: 3jsn_A*
Probab=26.08 E-value=23 Score=31.63 Aligned_cols=14 Identities=36% Similarity=0.738 Sum_probs=12.1
Q ss_pred CChHHHHhHHhhhc
Q 028248 1 MSNEEFDNLKEELM 14 (211)
Q Consensus 1 ~s~eefd~lkeel~ 14 (211)
+||+|||.|..||.
T Consensus 30 IsD~eYD~L~~eL~ 43 (318)
T 3jsl_A 30 VPDSEYDKLLHELI 43 (318)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 69999999988874
No 208
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=26.00 E-value=18 Score=30.50 Aligned_cols=35 Identities=14% Similarity=0.115 Sum_probs=23.4
Q ss_pred cCCCCCcccceeeccccccccCCCCcCceeCCCCCceeEEecC
Q 028248 157 GPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYDSN 199 (211)
Q Consensus 157 G~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L~f~~~ 199 (211)
+-||+||.--..-|- -....-+|..||..|.=|.+
T Consensus 132 ~~~~~~G~~Yh~~~~--------pp~~~~~~d~~g~~L~~R~D 166 (230)
T 3gmt_A 132 RTHPASGRTYHVKFN--------PPKVEGKDDVTGEPLVQRDD 166 (230)
T ss_dssp EEETTTTEEEETTTB--------CCSSTTBCTTTCCBCBCCGG
T ss_pred CcccccCCcccccCC--------CCCccCcCCCccCccccCCC
Confidence 449999975443331 23445689999999876653
No 209
>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD; 2.15A {Pisum sativum} SCOP: c.82.1.0 PDB: 3iwk_A* 4a0m_A*
Probab=25.91 E-value=1.4e+02 Score=27.48 Aligned_cols=67 Identities=24% Similarity=0.492 Sum_probs=43.5
Q ss_pred hHHHHhHHhhhcc-----cC------CeeEEeChhhHHHHHHHHh----hhcCC---------CccChHHHHHHHHHHh-
Q 028248 3 NEEFDNLKEELMW-----EG------SSVVMLSSAEQKFLEASMA----YVAGK---------PIMSDEEYDKLKQKLK- 57 (211)
Q Consensus 3 ~eefd~lkeel~w-----eG------ssv~~l~~~Eq~fLeA~~a----Y~~G~---------Pi~sD~efD~Lk~~Lk- 57 (211)
|.+.|.--+.+.| .| +.+++-...-.+|++++.+ ++-|. |+++.+.+++++.-+.
T Consensus 272 dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~v~~~i~~ 351 (503)
T 3iwj_A 272 DVDLDKAAEWAIFGCFWTNGQICSATSRLILHESIATEFLNRIVKWIKNIKISDPLEEGCRLGPVVSEGQYEKILKFVSN 351 (503)
T ss_dssp SSCHHHHHHHHHHHHTGGGGCCTTCEEEEEEETTTHHHHHHHHHHHHHTCCBSCTTSTTCCBCCCSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCcccCCeeEEcHHHHHHHHHHHHHHHHhccCCCCCCCCCcccCccCHHHHHHHHHHHHH
Confidence 4455555555665 34 3344445556778887643 44454 5789999999997774
Q ss_pred --hhCCeeeeeccc
Q 028248 58 --MEGSEIVVEGPR 69 (211)
Q Consensus 58 --~~GS~vv~~~pr 69 (211)
.+|.+++.-|.+
T Consensus 352 a~~~Ga~v~~gG~~ 365 (503)
T 3iwj_A 352 AKSEGATILTGGSR 365 (503)
T ss_dssp HHHTTCEEEECCSC
T ss_pred HHHCCCEEEecCCC
Confidence 478888876643
No 210
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=25.74 E-value=25 Score=24.76 Aligned_cols=38 Identities=21% Similarity=0.346 Sum_probs=18.3
Q ss_pred CCCCCcccceeeccccccccCCCCcCceeCCCCCceeE
Q 028248 158 PCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMV 195 (211)
Q Consensus 158 ~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L~ 195 (211)
.||.||..+..--.=..=...-...-..+|..|+....
T Consensus 30 ~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~ 67 (85)
T 2lv2_A 30 LCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFY 67 (85)
T ss_dssp ECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEES
T ss_pred ECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeC
Confidence 48888876543210000011111223478888887643
No 211
>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A
Probab=25.73 E-value=23 Score=25.99 Aligned_cols=39 Identities=18% Similarity=0.505 Sum_probs=25.1
Q ss_pred eeecCCCCCcccceeeccccccccCCCCcCceeCCCCCceeEEec
Q 028248 154 ILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYDS 198 (211)
Q Consensus 154 iLkG~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L~f~~ 198 (211)
+..=||| || ..|.+-...+ +. ...-+.|+.|.-.+.+.-
T Consensus 21 ~y~ypCr-CG-d~F~it~edL--~~--ge~iv~C~sCSL~I~V~~ 59 (83)
T 1yop_A 21 MFTYPCP-CG-DRFQIYLDDM--FE--GEKVAVCPSCSLMIDVVF 59 (83)
T ss_dssp EEEEEET-TT-EEEEEEHHHH--HT--TCCEEECSSSCCEEECBC
T ss_pred EEEEeCC-CC-CeEEECHHHH--hC--CCEEEECCCCccEEEEEE
Confidence 4678999 99 4444433333 22 245799999987776543
No 212
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=25.71 E-value=37 Score=24.49 Aligned_cols=26 Identities=27% Similarity=0.760 Sum_probs=18.3
Q ss_pred cCCCCCcccceeeccccccccCCCCcCceeCCCCCcee
Q 028248 157 GPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTM 194 (211)
Q Consensus 157 G~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L 194 (211)
-.|..|+.++..| .-+.-|-+||..+
T Consensus 10 ~~C~~C~~~F~~~------------~RrHHCR~CG~vf 35 (88)
T 1wfk_A 10 SRCYGCAVKFTLF------------KKEYGCKNCGRAF 35 (88)
T ss_dssp SBCTTTCCBCCSS------------SCEEECSSSCCEE
T ss_pred CCCcCcCCcccCc------------cccccCCCCCCEE
Confidence 3699999975433 5567788888754
No 213
>1ta8_A DNA ligase, NAD-dependent; nucleotidyl transferase fold; HET: DNA NMN; 1.80A {Enterococcus faecalis} SCOP: d.142.2.2 PDB: 3ba8_A* 1tae_A* 3ba9_A* 3baa_A* 3bab_A*
Probab=25.69 E-value=24 Score=31.71 Aligned_cols=14 Identities=29% Similarity=0.520 Sum_probs=12.6
Q ss_pred CChHHHHhHHhhhc
Q 028248 1 MSNEEFDNLKEELM 14 (211)
Q Consensus 1 ~s~eefd~lkeel~ 14 (211)
+||+|||.|..||.
T Consensus 37 IsD~eYD~L~~eL~ 50 (332)
T 1ta8_A 37 VEDYVYDRLYKELV 50 (332)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 69999999999875
No 214
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=25.65 E-value=20 Score=23.76 Aligned_cols=12 Identities=25% Similarity=0.797 Sum_probs=7.5
Q ss_pred CceeCCCCCcee
Q 028248 183 NTINCSNCGTTM 194 (211)
Q Consensus 183 ~~~kC~~C~~~L 194 (211)
...+|+.|+...
T Consensus 64 ~~~~C~~C~~~f 75 (95)
T 2yt9_A 64 KPYICQSCGKGF 75 (95)
T ss_dssp SSBCCSSSCCCB
T ss_pred CceECCCccchh
Confidence 446777777543
No 215
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=25.65 E-value=34 Score=27.48 Aligned_cols=34 Identities=21% Similarity=0.626 Sum_probs=24.5
Q ss_pred hhccceeeecCCCC--CcccceeeccccccccCCCCcCceeCCCCCce
Q 028248 148 IVRESLILKGPCPN--CGTENVSFFGTILSISSGGTTNTINCSNCGTT 193 (211)
Q Consensus 148 ~~~d~liLkG~CPn--Cg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~ 193 (211)
+..|+. ..-.||+ |..-|..- ......|+.|+..
T Consensus 36 i~~d~~-~Y~aC~~~~CnKKv~~~-----------~~g~~~CekC~~~ 71 (181)
T 1l1o_C 36 LRKENC-MYQACPTQDCNKKVIDQ-----------QNGLYRCEKCDTE 71 (181)
T ss_dssp ECCSTT-EEEBCCSTTCCCBCEEE-----------TTTEEEETTTTEE
T ss_pred EeCCCE-EECCCCchhcCCccccC-----------CCCeEECCCCCCc
Confidence 345555 5889999 99987632 2456899999865
No 216
>3pqa_A Lactaldehyde dehydrogenase; structural genomics, protein structure initiative, nysgrc, P biology, oxidoreductase; 1.50A {Methanocaldococcus jannaschii} PDB: 3rhd_A*
Probab=25.59 E-value=1.5e+02 Score=27.20 Aligned_cols=67 Identities=19% Similarity=0.403 Sum_probs=44.4
Q ss_pred ChHHHHhHHhhhcc-----cC------CeeEEeChhhHHHHHHHHh----hhcCC---------CccChHHHHHHHHHHh
Q 028248 2 SNEEFDNLKEELMW-----EG------SSVVMLSSAEQKFLEASMA----YVAGK---------PIMSDEEYDKLKQKLK 57 (211)
Q Consensus 2 s~eefd~lkeel~w-----eG------ssv~~l~~~Eq~fLeA~~a----Y~~G~---------Pi~sD~efD~Lk~~Lk 57 (211)
.|.+.|.--+.+.| .| +.+++-...-.+|++++.+ ++-|. |+++.+.+|+++.-+.
T Consensus 252 ~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~v~~~i~ 331 (486)
T 3pqa_A 252 KDADLNKAVNALIKGSFIYAGQVCISVGMILVDESIADKFIEMFVNKAKVLNVGNPLDEKTDVGPLISVEHAEWVEKVVE 331 (486)
T ss_dssp TTSCHHHHHHHHHHHHHGGGGCSTTSEEEEEEEGGGHHHHHHHHHHHHHTCCBSCTTSTTCSBCCCSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCccCCcEEEEeHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCCCCCHHHHHHHHHHHH
Confidence 34555666666666 34 3344444545678887643 45465 6899999999998774
Q ss_pred ---hhCCeeeeecc
Q 028248 58 ---MEGSEIVVEGP 68 (211)
Q Consensus 58 ---~~GS~vv~~~p 68 (211)
.+|.+++.-|.
T Consensus 332 ~a~~~Ga~v~~gG~ 345 (486)
T 3pqa_A 332 KAIDEGGKLLLGGK 345 (486)
T ss_dssp HHHHTTCEEEECCC
T ss_pred HHHHCCCEEEecCC
Confidence 56888887664
No 217
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=25.54 E-value=23 Score=24.11 Aligned_cols=38 Identities=13% Similarity=0.173 Sum_probs=18.6
Q ss_pred cCCCCCcccceeeccccccccCCCCcCceeCCCCCcee
Q 028248 157 GPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTM 194 (211)
Q Consensus 157 G~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L 194 (211)
=.|+.|+.....--.-..-...-......+|+.|+...
T Consensus 46 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f 83 (106)
T 2ee8_A 46 YTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGF 83 (106)
T ss_dssp CBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCC
T ss_pred cCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcc
Confidence 36888887654321000001111122346888888654
No 218
>3lvy_A Carboxymuconolactone decarboxylase family; alpha-structure, structural genomics, PSI-2, protein structure initiative; 2.10A {Streptococcus mutans}
Probab=25.51 E-value=92 Score=25.20 Aligned_cols=48 Identities=13% Similarity=0.257 Sum_probs=31.7
Q ss_pred CChHHHHhHHhhhcccCCeeEEeChhhHHHHHHHHhhhcCCCccChHHHHHHHH
Q 028248 1 MSNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIMSDEEYDKLKQ 54 (211)
Q Consensus 1 ~s~eefd~lkeel~weGssv~~l~~~Eq~fLeA~~aY~~G~Pi~sD~efD~Lk~ 54 (211)
+|+|+-+.+|+ |+. +-.++.|+.-|+...+-.....-++|+.|++|+.
T Consensus 117 ~~~e~i~a~r~-----~~~-~~~~~~erA~l~~a~~lt~~~~~v~d~~~~~l~~ 164 (207)
T 3lvy_A 117 MAPDLLEALRN-----ATP-IDDDPKLDTLAKFTIAVINTKGRVGDEAFADFLE 164 (207)
T ss_dssp CCHHHHHHHHH-----TCC-CSSCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred CCHHHHHHHHh-----CCC-CCCCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 35677666665 321 1147888877777666555444689999999875
No 219
>1uxt_A Glyceraldehyde-3-phosphate dehydrogenase (NADP+); GAPN, ALDH, glucose 1-phosphate, glycolysis, regulation, catatysis, oxidoreductase; HET: G1P NAD; 2.2A {Thermoproteus tenax} SCOP: c.82.1.1 PDB: 1uxp_A* 1uxq_A* 1uxr_A* 1uxn_A* 1uxu_A* 1uxv_A* 1ky8_A*
Probab=25.49 E-value=1.3e+02 Score=27.54 Aligned_cols=68 Identities=18% Similarity=0.357 Sum_probs=44.3
Q ss_pred ChHHHHhHHhhhcc-----cC------CeeEEeChhhHHHHHHHHh----hhcCC---------CccChHHHHHHHHHHh
Q 028248 2 SNEEFDNLKEELMW-----EG------SSVVMLSSAEQKFLEASMA----YVAGK---------PIMSDEEYDKLKQKLK 57 (211)
Q Consensus 2 s~eefd~lkeel~w-----eG------ssv~~l~~~Eq~fLeA~~a----Y~~G~---------Pi~sD~efD~Lk~~Lk 57 (211)
.|.+.|.--+.+.| .| +.+++-...-.+|++++.+ ++-|. |+++.+.+|+++.-+.
T Consensus 274 ~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~g~p~~~~~~~Gpli~~~~~~rv~~~i~ 353 (501)
T 1uxt_A 274 EDADLDLAADKIARGIYSYAGQRCDAIKLVLAERPVYGKLVEEVAKRLSSLRVGDPRDPTVDVGPLISPSAVDEMMAAIE 353 (501)
T ss_dssp TTSCHHHHHHHHHHHHHGGGGCSTTCEEEEEEEHHHHHHHHHHHHHHHHTCCBSCTTSTTCSBCCCSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCCCCCCcCCcEEEeccchHHHHHHHHHHHHHhccCCCccccCCcccCCCCHHHHHHHHHHHH
Confidence 34455666666666 34 3334444445778888643 44565 5799999999998775
Q ss_pred h---hCCeeeeeccc
Q 028248 58 M---EGSEIVVEGPR 69 (211)
Q Consensus 58 ~---~GS~vv~~~pr 69 (211)
. +|.+++.-|.+
T Consensus 354 ~a~~~Ga~~~~gG~~ 368 (501)
T 1uxt_A 354 DAVEKGGRVLAGGRR 368 (501)
T ss_dssp HHHHTTCEEEECCCB
T ss_pred HHHHCCCEEEeCCcc
Confidence 4 68888876654
No 220
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=25.00 E-value=21 Score=34.41 Aligned_cols=23 Identities=13% Similarity=0.508 Sum_probs=15.7
Q ss_pred CCCccChHHHHHHHHHHhhhCCe
Q 028248 40 GKPIMSDEEYDKLKQKLKMEGSE 62 (211)
Q Consensus 40 G~Pi~sD~efD~Lk~~Lk~~GS~ 62 (211)
|+=+|+.+.|+++-.+....|.+
T Consensus 172 GEv~m~~~~F~~ln~~~~~~g~~ 194 (586)
T 4glx_A 172 GEVFLPQAGFEKINEDARRTGGK 194 (586)
T ss_dssp EEEECCHHHHHHHHHHHHHTTCC
T ss_pred EEEEEEhhhccccchhhhhccCc
Confidence 45567777777777777666664
No 221
>1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase; 1.82A {Streptococcus mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A* 2qe0_A* 2esd_A* 1qi1_A*
Probab=25.00 E-value=1.1e+02 Score=27.65 Aligned_cols=67 Identities=13% Similarity=0.319 Sum_probs=43.6
Q ss_pred ChHHHHhHHhhhcc-----cC------CeeEEeChhhHHHHHHHHh----hhcCC--------CccChHHHHHHHHHHhh
Q 028248 2 SNEEFDNLKEELMW-----EG------SSVVMLSSAEQKFLEASMA----YVAGK--------PIMSDEEYDKLKQKLKM 58 (211)
Q Consensus 2 s~eefd~lkeel~w-----eG------ssv~~l~~~Eq~fLeA~~a----Y~~G~--------Pi~sD~efD~Lk~~Lk~ 58 (211)
.|.+.|.--+.+.| .| +.+++-...-.+|++++.. ++-|. |+++.+.+|+++.-+..
T Consensus 261 ~dADl~~aa~~i~~~~~~n~GQ~C~a~~rv~V~~~i~d~f~~~l~~~~~~~~~g~p~~~~~~gpli~~~~~~~v~~~i~~ 340 (475)
T 1euh_A 261 EDADLELTAKNIIAGAFGYSGQRCTAVKRVLVMESVADELVEKIREKVLALTIGNPEDDADITPLIDTKSADYVEGLIND 340 (475)
T ss_dssp TTSCHHHHHHHHHHHHHGGGGCCSSSEEEEEEEHHHHHHHHHHHHHHHHTSCBSCGGGTCSBCCCSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhcCCCcCCCCcEEEEehhHHHHHHHHHHHHHHhccCCCccccCccCCCCCHHHHHHHHHHHHH
Confidence 34455666666666 34 3334444445678887643 55564 68999999999987753
Q ss_pred ---hCCeeeeecc
Q 028248 59 ---EGSEIVVEGP 68 (211)
Q Consensus 59 ---~GS~vv~~~p 68 (211)
+|.+++.-|.
T Consensus 341 a~~~Ga~~~~gG~ 353 (475)
T 1euh_A 341 ANDKGATALTEIK 353 (475)
T ss_dssp HHHTTCEECSCCC
T ss_pred HHHCCCEEEeCCc
Confidence 6888776554
No 222
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=24.96 E-value=10 Score=33.29 Aligned_cols=37 Identities=24% Similarity=0.425 Sum_probs=25.4
Q ss_pred ecCCCCCcccceeeccccccccCCCCcCceeCCCCCceeEEecCce
Q 028248 156 KGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYDSNTR 201 (211)
Q Consensus 156 kG~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L~f~~~~r 201 (211)
--.||+|++.+|.= .+ ..+...|+.|+-.....+..|
T Consensus 24 ~~kc~~~~~~~~~~---~l------~~~~~v~~~~~~~~r~~arer 60 (304)
T 2f9y_B 24 WTKCDSCGQVLYRA---EL------ERNLEVCPKCDHHMRMTARNR 60 (304)
T ss_dssp EECCTTTCCCEETT---HH------HHTTTBCTTTCCBCCCCHHHH
T ss_pred HHhhhhccchhhHH---HH------HHHhCCCCCCCCCCCCCHHHH
Confidence 44699999987743 11 357788999997765554433
No 223
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.83 E-value=4 Score=27.68 Aligned_cols=35 Identities=20% Similarity=0.417 Sum_probs=22.4
Q ss_pred ecCCCCCcccceeeccccccccCCCCcCceeCCCCCceeEEecCc
Q 028248 156 KGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYDSNT 200 (211)
Q Consensus 156 kG~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L~f~~~~ 200 (211)
.-+||.|+....-. . +--.+.|+-|+..+.|+.+.
T Consensus 12 ~~~CPrCn~~f~~~----~------sLr~HmkycCp~~v~~~~~~ 46 (49)
T 2e72_A 12 RKICPRCNAQFRVT----E------ALRGHMCYCCPEMVEYQSGP 46 (49)
T ss_dssp CCCCTTTCCCCSSH----H------HHHHHHHHHCTTTCCCCCSC
T ss_pred ceeCCcccccccch----H------HHHhhhhhcCcchhhhhccC
Confidence 44799998765433 1 23456677788887777653
No 224
>2y53_A Aldehyde dehydrogenase (BOX pathway); oxidoreductase, NADP, nucleotide-binding; HET: NAP; 1.40A {Burkholderia xenovorans LB400} PDB: 2y52_A 2y51_A 2vro_A* 2y5d_A*
Probab=24.73 E-value=2e+02 Score=26.49 Aligned_cols=64 Identities=22% Similarity=0.347 Sum_probs=44.1
Q ss_pred HHHhHHhhhcc-----cC------CeeEEeChhhHHHHHHHHhh----hcC---------CCccChHHHHHHHHHHhh--
Q 028248 5 EFDNLKEELMW-----EG------SSVVMLSSAEQKFLEASMAY----VAG---------KPIMSDEEYDKLKQKLKM-- 58 (211)
Q Consensus 5 efd~lkeel~w-----eG------ssv~~l~~~Eq~fLeA~~aY----~~G---------~Pi~sD~efD~Lk~~Lk~-- 58 (211)
+.|.--+.+.| .| +.+++-...-.+|++++.+. .-| -|+++.+.+|+++.-+..
T Consensus 279 Dl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~vG~p~~~~~~~Gpli~~~~~~rv~~~i~~a~ 358 (534)
T 2y53_A 279 AFDLFIKEVVREMTVKSGQKCTAIRRAFVPEAALEPVLEALKAKLAKITVGNPRNDAVRMGSLVSREQYENVLAGIAALR 358 (534)
T ss_dssp HHHHHHHHHHHHHHGGGGCCTTSEEEEEEEGGGHHHHHHHHHHHHTTCCBBCTTSTTCSBCCCSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCcccCCCEEEEeccHHHHHHHHHHHHHHhccCCCCCcCCCCccCCCCHHHHHHHHHHHHHHH
Confidence 66777777777 44 33444444467888887653 334 378999999999988876
Q ss_pred hCCeeeeecc
Q 028248 59 EGSEIVVEGP 68 (211)
Q Consensus 59 ~GS~vv~~~p 68 (211)
+|.+++.-|.
T Consensus 359 ~ga~~~~GG~ 368 (534)
T 2y53_A 359 EEAVLAYDSS 368 (534)
T ss_dssp TSSEEEEECT
T ss_pred cCCEEEECCc
Confidence 5778777654
No 225
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=24.72 E-value=66 Score=25.22 Aligned_cols=31 Identities=19% Similarity=0.553 Sum_probs=21.7
Q ss_pred hccceeeecCCCCCcccceeeccccccccCCCCcCceeCCCCCce
Q 028248 149 VRESLILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTT 193 (211)
Q Consensus 149 ~~d~liLkG~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~ 193 (211)
+++--++-..|++||+- .| +-+.-|+.|+..
T Consensus 40 l~~g~L~~~rC~~CG~~--~f------------PPr~~Cp~C~s~ 70 (145)
T 2gnr_A 40 LKQNKIIGSKCSKCGRI--FV------------PARSYCEHCFVK 70 (145)
T ss_dssp HHTTCCEEEECTTTCCE--EE------------SCCSEETTTTEE
T ss_pred hhCCEEEEEEECCCCcE--Ee------------CCCCCCCCCCCC
Confidence 33444477889999974 33 445679999876
No 226
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.27 E-value=37 Score=22.18 Aligned_cols=36 Identities=28% Similarity=0.504 Sum_probs=22.2
Q ss_pred ecCCCCCcccce--eeccccccccCCCCcCc--eeCCCCCceeE
Q 028248 156 KGPCPNCGTENV--SFFGTILSISSGGTTNT--INCSNCGTTMV 195 (211)
Q Consensus 156 kG~CPnCg~Ev~--aFfg~i~~v~s~~~~~~--~kC~~C~~~L~ 195 (211)
...|+.|++.+. ..+ .. ..+..-|. .+|..|++.|.
T Consensus 5 ~~~C~~C~~~I~~~~~~---~~-a~~~~~H~~CF~C~~C~~~L~ 44 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRK---LE-YGGQTWHEHCFLCSGCEQPLG 44 (72)
T ss_dssp CCBCSSSCCBCCSSSCE---EC-STTCCEETTTCBCTTTCCBTT
T ss_pred CCCCccCCCccccCccE---EE-ECccccCcccCeECCCCCcCC
Confidence 357999999988 332 11 12222232 57899998874
No 227
>1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A*
Probab=24.20 E-value=1.4e+02 Score=25.38 Aligned_cols=65 Identities=17% Similarity=0.157 Sum_probs=44.3
Q ss_pred hHHHHhHHhhhcccCCeeEEeChhhHHHHHHHHhhhcCCCccCh-----HHHHHHHHHHhhhCCeeeeec
Q 028248 3 NEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIMSD-----EEYDKLKQKLKMEGSEIVVEG 67 (211)
Q Consensus 3 ~eefd~lkeel~weGssv~~l~~~Eq~fLeA~~aY~~G~Pi~sD-----~efD~Lk~~Lk~~GS~vv~~~ 67 (211)
.||+.++-..+.-.-.-.+.+-+..-+-+||...+|.|.+|+.| +.|+++=.-.+.+|-.+++.-
T Consensus 54 ~ee~~rvv~~i~~~~~~pisIDT~~~~v~~aAl~a~~Ga~iINdvs~~~d~~~~~~~~~a~~~~~vvlmh 123 (262)
T 1f6y_A 54 VSAMEWLVEVTQEVSNLTLCLDSTNIKAIEAGLKKCKNRAMINSTNAEREKVEKLFPLAVEHGAALIGLT 123 (262)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHCSSCEEEEEECSCHHHHHHHHHHHHHTTCEEEEES
T ss_pred HHHHHHHHHHHHHhCCCeEEEeCCCHHHHHHHHhhCCCCCEEEECCCCcccHHHHHHHHHHhCCcEEEEc
Confidence 46666666666554233466777777778777666699999974 445455555678899988864
No 228
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A
Probab=24.20 E-value=29 Score=28.30 Aligned_cols=13 Identities=31% Similarity=0.836 Sum_probs=9.2
Q ss_pred ecCCCCCcccceee
Q 028248 156 KGPCPNCGTENVSF 169 (211)
Q Consensus 156 kG~CPnCg~Ev~aF 169 (211)
-++||+|+ -...|
T Consensus 78 l~~CP~C~-G~l~y 90 (160)
T 2riq_A 78 LLPCEECS-GQLVF 90 (160)
T ss_dssp ECCCTTTC-CCEEE
T ss_pred CCCCCCCC-CEEEE
Confidence 36999999 44445
No 229
>3my7_A Alcohol dehydrogenase/acetaldehyde dehydrogenase; ACDH, PSI, MCSG, structural genomics, midwest center for STR genomics; 2.30A {Vibrio parahaemolyticus}
Probab=24.07 E-value=60 Score=29.35 Aligned_cols=55 Identities=13% Similarity=0.286 Sum_probs=36.8
Q ss_pred hHHHHhHHhhhcc-----cC------CeeEEeChhhHHHHHHHHhhhcCCCccChHHHHHHHHHHhhh
Q 028248 3 NEEFDNLKEELMW-----EG------SSVVMLSSAEQKFLEASMAYVAGKPIMSDEEYDKLKQKLKME 59 (211)
Q Consensus 3 ~eefd~lkeel~w-----eG------ssv~~l~~~Eq~fLeA~~aY~~G~Pi~sD~efD~Lk~~Lk~~ 59 (211)
|.+.|.--+.+.| .| +.+++-.+.-.+|++++.+. |-|+++++++++++.-+...
T Consensus 224 dADl~~Aa~~iv~s~~~~~GQ~C~a~~rv~V~~~i~d~f~~~l~~~--~gpli~~~~~~~v~~~i~~~ 289 (452)
T 3my7_A 224 TADIKRAVASVLMSKTFDNGVVCASEQAVIVVDEVYDEVKERFASH--KAHVLSKTDADKVRKVLLID 289 (452)
T ss_dssp TSCHHHHHHHHHHGGGGGGGCCTTCEEEEEEEGGGHHHHHHHHHTT--TEEECCHHHHHHHHHHHEET
T ss_pred CCCHHHHHHHHHHHHhCCCCCccCCCcEEEEcHHHHHHHHHHHHHh--CCCcCCHHHHHHHHHHHHhh
Confidence 4445555555555 23 33444445567888888775 67999999999998887643
No 230
>3r64_A NAD dependent benzaldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.57A {Corynebacterium glutamicum}
Probab=24.05 E-value=1.7e+02 Score=26.77 Aligned_cols=67 Identities=27% Similarity=0.537 Sum_probs=42.3
Q ss_pred hHHHHhHHhhhcc-----cCC------eeEEeChhhHHHHHHHHh----hhcCC---------CccChHHHHHHHHHHh-
Q 028248 3 NEEFDNLKEELMW-----EGS------SVVMLSSAEQKFLEASMA----YVAGK---------PIMSDEEYDKLKQKLK- 57 (211)
Q Consensus 3 ~eefd~lkeel~w-----eGs------sv~~l~~~Eq~fLeA~~a----Y~~G~---------Pi~sD~efD~Lk~~Lk- 57 (211)
|.+.|.--+.+.| .|- .+++-...-.+|++++.. +.-|. |+++.+.+|+++.-+.
T Consensus 272 dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~G~p~~~~~~~gpli~~~~~~~v~~~i~~ 351 (508)
T 3r64_A 272 DADIDAAAQAAAVGAFLHQGQICMSINRVIVDAAVHDEFLEKFVEAVKNIPTGDPSAEGTLVGPVINDSQLSGLKEKIEL 351 (508)
T ss_dssp TSCHHHHHHHHHHHHHTSTTCTTTCCSEEEEEHHHHHHHHHHHHHHHHTCCBSCTTSSSCCBCCCSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCcccCcEEEEehhHHHHHHHHHHHHHHhccCCCCccCCCcccCCCCHHHHHHHHHHHHH
Confidence 4455555566666 343 334444445678877643 44454 6799999999987765
Q ss_pred --hhCCeeeeeccc
Q 028248 58 --MEGSEIVVEGPR 69 (211)
Q Consensus 58 --~~GS~vv~~~pr 69 (211)
.+|.+++.-|.+
T Consensus 352 a~~~Ga~v~~gG~~ 365 (508)
T 3r64_A 352 AKKEGATVQVEGPI 365 (508)
T ss_dssp HHTTTCEEEECCCE
T ss_pred HHHcCCEEEecCCC
Confidence 468888776643
No 231
>2cw9_A Translocase of inner mitochondrial membrane; structure genomics, TIM, structural genomics, NPPFSA, riken structural genomics/proteomics initiative; HET: 1PE; 1.90A {Homo sapiens} SCOP: d.17.4.13
Probab=24.02 E-value=25 Score=28.57 Aligned_cols=32 Identities=16% Similarity=0.277 Sum_probs=26.0
Q ss_pred HHHHHHhhhcC-----CCccChHHHHHHHHHHhhhCC
Q 028248 30 FLEASMAYVAG-----KPIMSDEEYDKLKQKLKMEGS 61 (211)
Q Consensus 30 fLeA~~aY~~G-----~Pi~sD~efD~Lk~~Lk~~GS 61 (211)
|-+...||.+| ++.+++++|+.++..+++.++
T Consensus 66 y~~Iq~A~~~gD~~~Lr~~~t~~~~~~~~~~i~~r~~ 102 (194)
T 2cw9_A 66 IPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKA 102 (194)
T ss_dssp HHHHHHHHHHTCHHHHHHHBCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 34455679999 689999999999999987643
No 232
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.99 E-value=26 Score=23.71 Aligned_cols=36 Identities=25% Similarity=0.568 Sum_probs=22.2
Q ss_pred ecCCCCCcccceeeccccccccCCCCcCc--eeCCCCCceeE
Q 028248 156 KGPCPNCGTENVSFFGTILSISSGGTTNT--INCSNCGTTMV 195 (211)
Q Consensus 156 kG~CPnCg~Ev~aFfg~i~~v~s~~~~~~--~kC~~C~~~L~ 195 (211)
...|+.|++.++. .... ..+..-|. .+|..|+..|.
T Consensus 15 ~~~C~~C~~~I~~---~~~~-a~~~~~H~~CF~C~~C~~~L~ 52 (79)
T 1x62_A 15 LPMCDKCGTGIVG---VFVK-LRDRHRHPECYVCTDCGTNLK 52 (79)
T ss_dssp CCCCSSSCCCCCS---SCEE-CSSCEECTTTTSCSSSCCCHH
T ss_pred CCccccCCCCccC---cEEE-ECcceeCcCcCeeCCCCCCCC
Confidence 3579999999884 2221 11222232 57889998874
No 233
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.97 E-value=29 Score=22.68 Aligned_cols=35 Identities=11% Similarity=0.315 Sum_probs=21.4
Q ss_pred cCCCCCcccceeeccccccccCCCCcC--ceeCCCCCceeE
Q 028248 157 GPCPNCGTENVSFFGTILSISSGGTTN--TINCSNCGTTMV 195 (211)
Q Consensus 157 G~CPnCg~Ev~aFfg~i~~v~s~~~~~--~~kC~~C~~~L~ 195 (211)
..|+.|++.+.. .... ..+..-| =.+|..|++.|.
T Consensus 6 ~~C~~C~~~I~~---~~~~-a~~~~~H~~CF~C~~C~~~L~ 42 (70)
T 2d8z_A 6 SGCVQCKKPITT---GGVT-YREQPWHKECFVCTACRKQLS 42 (70)
T ss_dssp CBCSSSCCBCCS---SEEE-SSSSEEETTTSBCSSSCCBCT
T ss_pred CCCcccCCeecc---ceEE-ECccccCCCCCccCCCCCcCC
Confidence 469999999873 2111 1222222 257899999883
No 234
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=23.80 E-value=17 Score=32.07 Aligned_cols=34 Identities=24% Similarity=0.461 Sum_probs=0.0
Q ss_pred hhhccceeeecCCCCCcccceeeccccccccCCCCcCceeCCCCCcee
Q 028248 147 LIVRESLILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTM 194 (211)
Q Consensus 147 ~~~~d~liLkG~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L 194 (211)
.|..|.- --.|+.|+.++..+ ..++-|.+||..+
T Consensus 368 ~w~~~~~--~~~c~~c~~~f~~~------------~r~h~Cr~Cg~~~ 401 (434)
T 3mpx_A 368 TLVPVTH--VMMCMNCGCDFSLT------------LRRHHCHACGKIV 401 (434)
T ss_dssp ------------------------------------------------
T ss_pred cCCCccc--CCcCCCcCCCCCCc------------chhhhcccCcCEe
Confidence 3555543 24699999975433 4467888888654
No 235
>1uzb_A 1-pyrroline-5-carboxylate dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.4A {Thermus thermophilus} SCOP: c.82.1.1 PDB: 2eiw_A 2bhq_A* 2bhp_A* 2bja_A* 2bjk_A* 2ehq_A* 2ehu_A* 2eii_A* 2eit_A* 2ej6_A 2ejd_A* 2ejl_A 2iy6_A* 2j40_A* 2j5n_A*
Probab=23.76 E-value=1.5e+02 Score=27.21 Aligned_cols=66 Identities=24% Similarity=0.472 Sum_probs=41.6
Q ss_pred ChHHHHhHHhhhcc-----cCCe------eEEeChhhHHHHHHHHh----hhcCC--------CccChHHHHHHHHHHhh
Q 028248 2 SNEEFDNLKEELMW-----EGSS------VVMLSSAEQKFLEASMA----YVAGK--------PIMSDEEYDKLKQKLKM 58 (211)
Q Consensus 2 s~eefd~lkeel~w-----eGss------v~~l~~~Eq~fLeA~~a----Y~~G~--------Pi~sD~efD~Lk~~Lk~ 58 (211)
.|.+.|.--+.+.| .|-. +++-...-.+|++++.+ ++-|. |++++..+|+++.-+..
T Consensus 299 ~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~G~p~~~~~~Gpli~~~~~~~v~~~i~~ 378 (516)
T 1uzb_A 299 ETADFDLAAEGVVVSAYGFQGQKCSAASRLILTQGAYEPVLERVLKRAERLSVGPAEENPDLGPVVSAEQERKVLSYIEI 378 (516)
T ss_dssp TTSCHHHHHHHHHHHHHGGGGCSTTCEEEEEEEHHHHHHHHHHHHHHHTTCCBSCGGGCCSBCCCSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCccccCcEEEEchHHHHHHHHHHHHHHHhccCCCCccccccCCCCCHHHHHHHHHHHHH
Confidence 34455666666666 3433 33334445678888754 33354 68999999999988754
Q ss_pred ---hCCeeeeecc
Q 028248 59 ---EGSEIVVEGP 68 (211)
Q Consensus 59 ---~GS~vv~~~p 68 (211)
+| +++.-|.
T Consensus 379 a~~~G-~v~~gg~ 390 (516)
T 1uzb_A 379 GKNEG-QLVLGGK 390 (516)
T ss_dssp HTTTS-EEEECCS
T ss_pred HHHCC-CEEECCc
Confidence 57 7665553
No 236
>1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH, isomerization, oxidoreductase; HET: NAD; 1.42A {Homo sapiens} SCOP: c.82.1.1 PDB: 1nzw_A* 3inl_A* 3n80_A* 1nzz_A* 1o00_A* 1nzx_A* 1o01_A* 1o05_A 1of7_A* 1o02_A* 3inj_A* 3sz9_A* 1zum_A 2onm_A* 2onp_A* 2onn_A 2ono_A* 3n81_A 3n82_A* 3n83_A* ...
Probab=23.71 E-value=1.2e+02 Score=27.94 Aligned_cols=68 Identities=22% Similarity=0.436 Sum_probs=43.6
Q ss_pred ChHHHHhHHhhhcc-----cC------CeeEEeChhhHHHHHHHH----hhhcCC---------CccChHHHHHHHHHHh
Q 028248 2 SNEEFDNLKEELMW-----EG------SSVVMLSSAEQKFLEASM----AYVAGK---------PIMSDEEYDKLKQKLK 57 (211)
Q Consensus 2 s~eefd~lkeel~w-----eG------ssv~~l~~~Eq~fLeA~~----aY~~G~---------Pi~sD~efD~Lk~~Lk 57 (211)
.|.+.|.--+.+.| .| +.+++-...-.+|++++. +++-|. |+++.+.+|+++.-+.
T Consensus 279 ~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~G~p~~~~~~~Gpli~~~~~~rv~~~i~ 358 (500)
T 1o04_A 279 SDADMDWAVEQAHFALFFNQGQCSCAGSRTFVQEDIYDEFVERSVARAKSRVVGNPFDSKTEQGPQVDETQFKKILGYIN 358 (500)
T ss_dssp TTSCHHHHHHHHHHHHHGGGGCCTTCEEEEEEEHHHHHHHHHHHHHHHHHCCBCCTTSTTCSBCCCSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhccCCCCCCCCCEEEEehhHHHHHHHHHHHHHHhCcCCCcccccCccCcccCHHHHHHHHHHHH
Confidence 34555666666666 34 333444444567887754 355564 5899999999998775
Q ss_pred ---hhCCeeeeeccc
Q 028248 58 ---MEGSEIVVEGPR 69 (211)
Q Consensus 58 ---~~GS~vv~~~pr 69 (211)
.+|.+++.-|.+
T Consensus 359 ~a~~~Ga~~~~gG~~ 373 (500)
T 1o04_A 359 TGKQEGAKLLCGGGI 373 (500)
T ss_dssp HHHHTTCEEEECCSB
T ss_pred HHHhCCCEEEeCCcc
Confidence 458888775543
No 237
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=23.55 E-value=31 Score=22.29 Aligned_cols=36 Identities=14% Similarity=0.410 Sum_probs=22.5
Q ss_pred ecCCCCCcccceeeccccccccCCCCcCc--eeCCCCCceeE
Q 028248 156 KGPCPNCGTENVSFFGTILSISSGGTTNT--INCSNCGTTMV 195 (211)
Q Consensus 156 kG~CPnCg~Ev~aFfg~i~~v~s~~~~~~--~kC~~C~~~L~ 195 (211)
...|+.|++.+.. .... ..+..=|. .+|..|++.|.
T Consensus 5 ~~~C~~C~~~I~~---~~~~-a~~~~~H~~CF~C~~C~~~L~ 42 (66)
T 1nyp_A 5 VPICGACRRPIEG---RVVN-AMGKQWHVEHFVCAKCEKPFL 42 (66)
T ss_dssp CCEETTTTEECCS---CEEC-CTTSBEETTTCBCTTTCCBCS
T ss_pred CCCCcccCCEecc---eEEE-ECccccccCcCEECCCCCCCC
Confidence 3569999999973 3221 22222232 57899999884
No 238
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=23.53 E-value=46 Score=22.36 Aligned_cols=30 Identities=20% Similarity=0.568 Sum_probs=20.8
Q ss_pred CCCCCcccceeeccccccccCCCCcCceeCC--CCCceeEEecC
Q 028248 158 PCPNCGTENVSFFGTILSISSGGTTNTINCS--NCGTTMVYDSN 199 (211)
Q Consensus 158 ~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~--~C~~~L~f~~~ 199 (211)
.||.|..+..-- ..+..|+ .|+..--.+..
T Consensus 12 ~CP~c~~~L~~~------------~~~L~C~~~~c~~~YPI~dG 43 (56)
T 2kpi_A 12 ACPACHAPLEER------------DAELICTGQDCGLAYPVRDG 43 (56)
T ss_dssp CCSSSCSCEEEE------------TTEEEECSSSCCCEEEEETT
T ss_pred eCCCCCCcceec------------CCEEEcCCcCCCcEEeeECC
Confidence 799999874321 2778899 88876666543
No 239
>3rmt_A 3-phosphoshikimate 1-carboxyvinyltransferase 1; structural genomics, protein structure initiative; 2.80A {Bacillus halodurans}
Probab=23.29 E-value=86 Score=28.82 Aligned_cols=50 Identities=14% Similarity=0.248 Sum_probs=41.1
Q ss_pred hhHHHHHHHHhhhcCCCccCh---------HHHHHHHHHHhhhCCeeeeeccceeecCc
Q 028248 26 AEQKFLEASMAYVAGKPIMSD---------EEYDKLKQKLKMEGSEIVVEGPRCSLRSR 75 (211)
Q Consensus 26 ~Eq~fLeA~~aY~~G~Pi~sD---------~efD~Lk~~Lk~~GS~vv~~~prCslr~~ 75 (211)
++|-.|-++.++.+|.-.+.+ +-|..+..+|+.-|-+|...+-...++|.
T Consensus 318 D~~p~lavla~~a~G~s~I~~~~~LrvkEsdRi~a~~~eL~kmGa~i~~~~d~l~I~G~ 376 (455)
T 3rmt_A 318 DEIPIIAVLATQASGRTVIKDAEELKVKETNRIDTVVSELTKLGASIHATDDGMIIEGP 376 (455)
T ss_dssp GGHHHHHHHHHTSBSCEEEEC-----CHHHHHHHHHHHHHHHTTCCEEEETTEEEECSC
T ss_pred HHHHHHHHHHHhCCCcEEEEccccccccchhHHHHHHHHHHHCCCEEEEECCEEEEECC
Confidence 778899999999999999998 34556678999999998887766666654
No 240
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.21 E-value=58 Score=21.82 Aligned_cols=34 Identities=12% Similarity=0.260 Sum_probs=21.3
Q ss_pred CCCCCcccceeeccccccccCCCCc--CceeCCCCCceeE
Q 028248 158 PCPNCGTENVSFFGTILSISSGGTT--NTINCSNCGTTMV 195 (211)
Q Consensus 158 ~CPnCg~Ev~aFfg~i~~v~s~~~~--~~~kC~~C~~~L~ 195 (211)
.|+.|++.+..- .... .+..- +=.+|..|++.|.
T Consensus 17 ~C~~C~~~I~~~---~~~a-~~~~~H~~CF~C~~C~~~L~ 52 (81)
T 1x6a_A 17 FCHGCSLLMTGP---FMVA-GEFKYHPECFACMSCKVIIE 52 (81)
T ss_dssp BCTTTCCBCCSC---CBCC-TTCCBCTTSCBCTTTCCBCC
T ss_pred cCccCCCCcCce---EEEE-CCceeccccCCccCCCCccC
Confidence 499999999832 2211 12222 2357899998884
No 241
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.18 E-value=31 Score=19.86 Aligned_cols=8 Identities=38% Similarity=1.190 Sum_probs=3.9
Q ss_pred CCCCCccc
Q 028248 158 PCPNCGTE 165 (211)
Q Consensus 158 ~CPnCg~E 165 (211)
.|+.||..
T Consensus 14 ~C~~C~k~ 21 (46)
T 2epz_A 14 DCIDCGKA 21 (46)
T ss_dssp CCTTTCCC
T ss_pred ECCCCCce
Confidence 35555544
No 242
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=23.04 E-value=43 Score=30.24 Aligned_cols=36 Identities=19% Similarity=0.379 Sum_probs=24.0
Q ss_pred eeeecCCCCCcccceeeccccccccCCCCcCceeCCCCCceeEEe
Q 028248 153 LILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYD 197 (211)
Q Consensus 153 liLkG~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L~f~ 197 (211)
+-.-..|++||.--..+ + . .+-..+|+.||..+..-
T Consensus 241 ~g~v~~C~~C~~~~~~~-~----~----~~~~~~C~~cg~~~~~~ 276 (392)
T 3axs_A 241 FGYIQYCFNCMNREVVT-D----L----YKFKEKCPHCGSKFHIG 276 (392)
T ss_dssp EEEEEECTTTCCEEEEC-C----G----GGCCSBCTTTCSBCEEE
T ss_pred cceEEECCCCCCeEeec-C----C----CCCCCcCCCCCCcccee
Confidence 55667899999754433 1 1 12457899999877653
No 243
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.99 E-value=44 Score=21.88 Aligned_cols=35 Identities=20% Similarity=0.485 Sum_probs=22.0
Q ss_pred cCCCCCccccee--eccccccccCCCCcCc--eeCCCCCceeE
Q 028248 157 GPCPNCGTENVS--FFGTILSISSGGTTNT--INCSNCGTTMV 195 (211)
Q Consensus 157 G~CPnCg~Ev~a--Ffg~i~~v~s~~~~~~--~kC~~C~~~L~ 195 (211)
..|+.|++.+.. .+ +. ..+..-|. .+|..|++.|.
T Consensus 6 ~~C~~C~~~I~~~~~~--~~--a~~~~~H~~CF~C~~C~~~L~ 44 (72)
T 1x61_A 6 SGCGGCGEDVVGDGAG--VV--ALDRVFHVGCFVCSTCRAQLR 44 (72)
T ss_dssp CCCSSSCSCCCSSSCC--EE--CSSSEECTTTCBCSSSCCBCT
T ss_pred CCCccCCCccCCCceE--EE--ECCCeEcccCCcccccCCcCC
Confidence 569999999874 21 11 12222233 68899999983
No 244
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=22.87 E-value=48 Score=20.93 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=15.7
Q ss_pred cChHHHHHHHHHHhhhCCe
Q 028248 44 MSDEEYDKLKQKLKMEGSE 62 (211)
Q Consensus 44 ~sD~efD~Lk~~Lk~~GS~ 62 (211)
++++|++.|+.+-+..|-.
T Consensus 22 lt~eE~~~l~~~A~~~g~s 40 (51)
T 2ba3_A 22 FSPVEDETIRKKAEDSGLT 40 (51)
T ss_dssp ECHHHHHHHHHHHHHHTCC
T ss_pred ECHHHHHHHHHHHHHhCCC
Confidence 6789999999988888843
No 245
>2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial; mitochondrion, oxidoreductase, transit peptide, disease mutation, SSA, NAD, ssadh; 2.00A {Homo sapiens} PDB: 2w8o_A 2w8p_A 2w8q_A 2w8r_A*
Probab=22.77 E-value=1.2e+02 Score=27.70 Aligned_cols=68 Identities=18% Similarity=0.401 Sum_probs=43.9
Q ss_pred ChHHHHhHHhhhcc-----cCCee------EEeChhhHHHHHHHHh-----hhcCC---------CccChHHHHHHHHHH
Q 028248 2 SNEEFDNLKEELMW-----EGSSV------VMLSSAEQKFLEASMA-----YVAGK---------PIMSDEEYDKLKQKL 56 (211)
Q Consensus 2 s~eefd~lkeel~w-----eGssv------~~l~~~Eq~fLeA~~a-----Y~~G~---------Pi~sD~efD~Lk~~L 56 (211)
.|.+.|.--+.+.| .|-.| ++-...-.+|++++.. +.-|. |+++.+.+|+++.-+
T Consensus 269 ~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~~G~p~~~~~~~gpli~~~~~~rv~~~i 348 (487)
T 2w8n_A 269 DSANVDQAVAGAMASKFRNTGQTCVCSNQFLVQRGIHDAFVKAFAEAMKKNLRVGNGFEEGTTQGPLINEKAVEKVEKQV 348 (487)
T ss_dssp TTSCHHHHHHHHHHHHTCCCSCCCSEEEEEEEEHHHHHHHHHHHHHHHHHHCCBSCTTSTTCCBCCCSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCccccCCEEEEcccHHHHHHHHHHHHHHhhcccCCcccccCcccCCCCHHHHHHHHHHH
Confidence 34556666666666 45333 3334445788888654 33344 589999999999877
Q ss_pred hh---hCCeeeeeccc
Q 028248 57 KM---EGSEIVVEGPR 69 (211)
Q Consensus 57 k~---~GS~vv~~~pr 69 (211)
.. +|.+++.-|.+
T Consensus 349 ~~a~~~Ga~~~~gg~~ 364 (487)
T 2w8n_A 349 NDAVSKGATVVTGGKR 364 (487)
T ss_dssp HHHHTTTCEEEECCSB
T ss_pred HHHHHCCCEEEeCCcc
Confidence 54 58887776543
No 246
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=22.75 E-value=30 Score=34.87 Aligned_cols=32 Identities=38% Similarity=0.690 Sum_probs=22.2
Q ss_pred cCCCCCccc-------ceeeccccccccCCCCcCceeCCCC---CceeEEecC
Q 028248 157 GPCPNCGTE-------NVSFFGTILSISSGGTTNTINCSNC---GTTMVYDSN 199 (211)
Q Consensus 157 G~CPnCg~E-------v~aFfg~i~~v~s~~~~~~~kC~~C---~~~L~f~~~ 199 (211)
-.||.||.. .|+| ++..--||.| |..+.+|..
T Consensus 250 ~~c~~~~~~~~~~~~~~fsf-----------n~p~g~C~~C~G~G~~~~~d~~ 291 (916)
T 3pih_A 250 LMCPVCGIGFPEITPKLFSF-----------NSPYGACPNCHGLGFTFEVDPS 291 (916)
T ss_dssp CBCTTTCCCCCCCSGGGGCT-----------TSTTTBCTTTTTSSEEEEECSC
T ss_pred ccCcccCCccCCCCHhhcCC-----------CCCCCcCCeeecccceEecCHH
Confidence 369999955 3555 3445679999 577777754
No 247
>1vzi_A Desulfoferrodoxin; ferrocyanide, microspectrophotometry, redox states, photoreduction, dinuclear iron cluster, oxidoreductase; 1.15A {Desulfovibrio baarsii} SCOP: b.1.13.1 g.41.5.2 PDB: 1vzh_A* 1vzg_A 2ji1_A 2ji2_A 2ji3_A 1dfx_A
Probab=22.61 E-value=26 Score=27.11 Aligned_cols=30 Identities=20% Similarity=0.251 Sum_probs=19.2
Q ss_pred CCCCCcccceeeccccccccCCCCcCceeCCCCCceeEEec
Q 028248 158 PCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYDS 198 (211)
Q Consensus 158 ~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L~f~~ 198 (211)
-|+.||.-+...- ........||..|+--.
T Consensus 9 kC~~CGnivev~~-----------~g~~~l~CCG~~m~~l~ 38 (126)
T 1vzi_A 9 KCEVCGNIVEVLN-----------GGIGELVCCNQDMKLMS 38 (126)
T ss_dssp ECTTTCCEEEEEE-----------CCSSCEEETTEECEECC
T ss_pred EcCCCCeEEEEEc-----------CCCcceecCCccccccc
Confidence 4999998886652 22233345888887654
No 248
>3twl_A Formamidopyrimidine-DNA glycosylase 1; helix two turns helix, zinc-LESS finger, hydrolase, DNA DAMA repair, DNA-binding, glycosidase, lyase; 1.70A {Arabidopsis thaliana} PDB: 3twm_A* 3twk_A
Probab=22.49 E-value=26 Score=30.86 Aligned_cols=37 Identities=14% Similarity=0.068 Sum_probs=21.7
Q ss_pred hccceeeec----CCC--CCcccceeeccccccccCCCCcCceeCCCCCce
Q 028248 149 VRESLILKG----PCP--NCGTENVSFFGTILSISSGGTTNTINCSNCGTT 193 (211)
Q Consensus 149 ~~d~liLkG----~CP--nCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~ 193 (211)
+++.+.+.| ||| .||+.+..-. + +.++..-||.|...
T Consensus 236 f~~~~~vygR~g~pC~~~~CG~~I~~~~-----~---~gR~t~~CP~CQ~~ 278 (310)
T 3twl_A 236 FPSNWIFHNREKKPGKAFVDGKKIDFIT-----A---GGRTTAYVPELQKL 278 (310)
T ss_dssp SCTTCGGGGTTSCTTSCEETTEECEECC-----E---------ECTTTCCC
T ss_pred CcccEEEeCcCCCCCCCCCCCCeEEEEE-----E---CCcccEECCCCcCC
Confidence 444555654 899 9999887541 1 14788899999863
No 249
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.46 E-value=34 Score=22.54 Aligned_cols=38 Identities=18% Similarity=0.408 Sum_probs=22.3
Q ss_pred cCCCCCcccceee-ccccccccCCCCcC--ceeCCCCCceeE
Q 028248 157 GPCPNCGTENVSF-FGTILSISSGGTTN--TINCSNCGTTMV 195 (211)
Q Consensus 157 G~CPnCg~Ev~aF-fg~i~~v~s~~~~~--~~kC~~C~~~L~ 195 (211)
..|+.|++.+..+ =..+.. ..++.-| =.+|..|+..|.
T Consensus 6 ~~C~~C~~~I~~~~~~~~~~-a~~~~wH~~CF~C~~C~~~L~ 46 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKYIS-FEERQWHNDCFNCKKCSLSLV 46 (72)
T ss_dssp CSBTTTTBCCCCSSSCSCEE-CSSCEECTTTCBCSSSCCBCT
T ss_pred CCCcCCCccccCCCCcceEE-ECCcccCcccCEeccCCCcCC
Confidence 4699999999852 001111 1122223 268999999884
No 250
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=22.32 E-value=87 Score=19.47 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q 028248 131 FAAVPLIVYLSQSLTKLIVRE 151 (211)
Q Consensus 131 ~~~~Pvi~~~a~~lt~~~~~d 151 (211)
.+.+|++.-+...|..-|++|
T Consensus 7 ~IIaPivVGvvl~L~d~WLn~ 27 (33)
T 2kv5_A 7 LVIAPIFVGLVLEMISRVLDE 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHcc
Confidence 467899988888888888775
No 251
>1h7b_A Anaerobic ribonucleotide-triphosphate reductase large chain; oxidoreductase, allosteric regulation, substrate specificity; 2.45A {Bacteriophage T4} SCOP: c.7.1.3 PDB: 1h79_A* 1h7a_A* 1h78_A 1hk8_A*
Probab=22.26 E-value=19 Score=34.72 Aligned_cols=26 Identities=35% Similarity=0.768 Sum_probs=2.2
Q ss_pred cCCCCCcccceeeccccccccCCCCcCceeCCCCCc
Q 028248 157 GPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGT 192 (211)
Q Consensus 157 G~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~ 192 (211)
.-||+||..-. + |. ....-+||+||.
T Consensus 541 ~~C~~CGy~~~-~-~~--------~~~~~~CP~Cg~ 566 (605)
T 1h7b_A 541 DKCFTCGSTHE-M-TP--------TENGFVCSICGE 566 (605)
T ss_dssp EET---------------------------------
T ss_pred ccCcccCCcCc-c-Cc--------cccCCcCCCCCC
Confidence 56999996211 1 10 112367999996
No 252
>2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase, oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo sapiens} PDB: 2jg7_A*
Probab=22.19 E-value=1.8e+02 Score=26.63 Aligned_cols=67 Identities=12% Similarity=0.277 Sum_probs=43.4
Q ss_pred hHHHHhHHhhhcc-----cC------CeeEEeChhhHHHHHHHHh----hhcCC---------CccChHHHHHHHHHHh-
Q 028248 3 NEEFDNLKEELMW-----EG------SSVVMLSSAEQKFLEASMA----YVAGK---------PIMSDEEYDKLKQKLK- 57 (211)
Q Consensus 3 ~eefd~lkeel~w-----eG------ssv~~l~~~Eq~fLeA~~a----Y~~G~---------Pi~sD~efD~Lk~~Lk- 57 (211)
|.+.|.--+.+.| .| +.+++-...-.+|++++.+ +.-|. |+++.+.+|+++.-+.
T Consensus 281 dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~G~p~~~~~~~gpli~~~~~~rv~~~i~~ 360 (500)
T 2j6l_A 281 DADLSLVVPSALFAAVGTAGQRCTTARRLFIHESIHDEVVNRLKKAYAQIRVGNPWDPNVLYGPLHTKQAVSMFLGAVEE 360 (500)
T ss_dssp TCCHHHHHHHHHHHHHGGGGCSTTCEEEEEEETTTHHHHHHHHHHHHHTCCBSCTTSTTCCBCCCSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCcCCCcEEEEcHHHHHHHHHHHHHHhhhcccCCcccCCCccccCCCHHHHHHHHHHHHH
Confidence 4455666666666 34 3445555556778888643 33454 5789999999987765
Q ss_pred --hhCCeeeeeccc
Q 028248 58 --MEGSEIVVEGPR 69 (211)
Q Consensus 58 --~~GS~vv~~~pr 69 (211)
.+|.+++.-|.+
T Consensus 361 a~~~Ga~v~~gg~~ 374 (500)
T 2j6l_A 361 AKKEGGTVVYGGKV 374 (500)
T ss_dssp HHHTTCEEEECCSB
T ss_pred HHHCCCEEEECCcc
Confidence 458888776644
No 253
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.10 E-value=73 Score=21.86 Aligned_cols=13 Identities=23% Similarity=0.823 Sum_probs=9.2
Q ss_pred CceeCCCCCceeE
Q 028248 183 NTINCSNCGTTMV 195 (211)
Q Consensus 183 ~~~kC~~C~~~L~ 195 (211)
...+|+.|+....
T Consensus 79 ~~~~C~~C~k~f~ 91 (115)
T 2dmi_A 79 KVLKCMYCGHSFE 91 (115)
T ss_dssp SSCBCSSSCCBCS
T ss_pred cceECCCCCCccC
Confidence 3468999987643
No 254
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=22.00 E-value=34 Score=35.02 Aligned_cols=31 Identities=29% Similarity=0.666 Sum_probs=20.9
Q ss_pred cCCCCCccc-------ceeeccccccccCCCCcCceeCCCCC---ceeEEec
Q 028248 157 GPCPNCGTE-------NVSFFGTILSISSGGTTNTINCSNCG---TTMVYDS 198 (211)
Q Consensus 157 G~CPnCg~E-------v~aFfg~i~~v~s~~~~~~~kC~~C~---~~L~f~~ 198 (211)
-.||.||.. .|+| |+-.--|+.|. ..+++|.
T Consensus 268 ~~cp~~g~~~~~~~p~~FSf-----------N~p~GaCp~C~G~G~~~~~d~ 308 (972)
T 2r6f_A 268 HACPYCGFSIGELEPRLFSF-----------NSPFGACPDCDGLGAKLEVDL 308 (972)
T ss_dssp EECTTTCCEEECCCGGGGCS-----------SSTTTBCTTTTSCCEEEEECH
T ss_pred ccCCCCCCcCCCCChhhcCc-----------CCCCCCCCCCcCccceEeeCH
Confidence 469999974 4555 33345699995 6666664
No 255
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=21.98 E-value=54 Score=24.58 Aligned_cols=30 Identities=27% Similarity=0.522 Sum_probs=20.4
Q ss_pred cCCCCCcccceeeccccccccCCCCcCceeCCCCCcee
Q 028248 157 GPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTM 194 (211)
Q Consensus 157 G~CPnCg~Ev~aFfg~i~~v~s~~~~~~~kC~~C~~~L 194 (211)
-.||.|+.-+.-- ..+-....+|..|+..+
T Consensus 15 ~~c~~c~~~~~~~--------~~r~~~~~~~~~~~~~~ 44 (155)
T 2ppt_A 15 LTCLACGQANKVP--------SDRLAAGPKCGICGAGL 44 (155)
T ss_dssp EECTTTCCEEEEE--------GGGTTSCCBCTTTCCBS
T ss_pred EECccccccccCC--------cccccCCCCCCcCCccc
Confidence 5799999876643 11223456899998876
No 256
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=21.90 E-value=32 Score=35.20 Aligned_cols=33 Identities=27% Similarity=0.497 Sum_probs=22.6
Q ss_pred ecCCCCCc-c-------cceeeccccccccCCCCcCceeCCCCC---ceeEEecC
Q 028248 156 KGPCPNCG-T-------ENVSFFGTILSISSGGTTNTINCSNCG---TTMVYDSN 199 (211)
Q Consensus 156 kG~CPnCg-~-------Ev~aFfg~i~~v~s~~~~~~~kC~~C~---~~L~f~~~ 199 (211)
+-.||.|| . ..|+| ++-.--|+.|. ..+++|.+
T Consensus 275 ~~~c~~~g~~~~~~~~p~~FSf-----------N~p~GaCp~C~G~G~~~~~d~~ 318 (993)
T 2ygr_A 275 KLACPNGHALAVDDLEPRSFSF-----------NSPYGACPDCSGLGIRKEVDPE 318 (993)
T ss_dssp SCBCTTCCCCSCSCCCGGGGCT-----------TSTTTBCTTTTTSCEEEEECTT
T ss_pred cccCCCCCCcccCCCChhhcCc-----------CCCCCCCCCCcCccceeecCHH
Confidence 34799999 3 45666 34445699995 77777764
No 257
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=21.76 E-value=13 Score=23.91 Aligned_cols=10 Identities=30% Similarity=0.899 Sum_probs=7.2
Q ss_pred ceeCCCCCce
Q 028248 184 TINCSNCGTT 193 (211)
Q Consensus 184 ~~kC~~C~~~ 193 (211)
..+|+.|+..
T Consensus 57 ~~~C~~C~~~ 66 (82)
T 2kmk_A 57 PHKCQVCGKA 66 (82)
T ss_dssp CEECTTTSCE
T ss_pred CCcCCCcchh
Confidence 4778888764
No 258
>2i5b_A Phosphomethylpyrimidine kinase; ADP complex, PDXK, THID, ribokinase superfamily, transferase; HET: ADP; 2.80A {Bacillus subtilis}
Probab=21.61 E-value=2e+02 Score=23.10 Aligned_cols=53 Identities=21% Similarity=0.303 Sum_probs=33.2
Q ss_pred HhHHhhhcccCCeeEEeChhhHHHHHHHHhhhcCCC-ccChHHHHHHHHHHhhhCC-eeeeec
Q 028248 7 DNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKP-IMSDEEYDKLKQKLKMEGS-EIVVEG 67 (211)
Q Consensus 7 d~lkeel~weGssv~~l~~~Eq~fLeA~~aY~~G~P-i~sD~efD~Lk~~Lk~~GS-~vv~~~ 67 (211)
+.|+++| .....+++.+..|-+.| .|.+ +-+.++..+.-++|...|- .|++++
T Consensus 125 ~~l~~~l-l~~~diltpN~~E~~~L-------~g~~~~~~~~~~~~~a~~l~~~g~~~Vvvt~ 179 (271)
T 2i5b_A 125 QALREQL-APLATVITPNLFEASQL-------SGMDELKTVDDMIEAAKKIHALGAQYVVITG 179 (271)
T ss_dssp HHHHHHT-GGGCSEECCBHHHHHHH-------HTCCCCCSHHHHHHHHHHHHTTTCSEEEEEC
T ss_pred HHHHHHh-HhhCcEEcCCHHHHHHH-------hCCCCCCCHHHHHHHHHHHHHhCCCEEEEcC
Confidence 4566554 35677888888887655 3555 5555555555566766664 566664
No 259
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=21.60 E-value=47 Score=23.15 Aligned_cols=20 Identities=5% Similarity=-0.039 Sum_probs=13.6
Q ss_pred HHHHhhhccceeeecCCCCCcccce
Q 028248 143 SLTKLIVRESLILKGPCPNCGTENV 167 (211)
Q Consensus 143 ~lt~~~~~d~liLkG~CPnCg~Ev~ 167 (211)
.|..||.+ .+.||.|+++..
T Consensus 40 ~I~~~l~~-----~~~cP~~~~~l~ 59 (85)
T 2kr4_A 40 IILRHLLN-----SPTDPFNRQMLT 59 (85)
T ss_dssp HHHHHHHH-----CSBCTTTCCBCC
T ss_pred HHHHHHhc-----CCCCCCCcCCCC
Confidence 34555554 378999998764
No 260
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.38 E-value=30 Score=24.06 Aligned_cols=36 Identities=25% Similarity=0.540 Sum_probs=22.3
Q ss_pred ecCCCCCcccceeeccccccccCCCC--cCceeCCCCCceeE
Q 028248 156 KGPCPNCGTENVSFFGTILSISSGGT--TNTINCSNCGTTMV 195 (211)
Q Consensus 156 kG~CPnCg~Ev~aFfg~i~~v~s~~~--~~~~kC~~C~~~L~ 195 (211)
...|+.|++.+..- ... ..+.. ++=.+|+.|++.|.
T Consensus 25 ~~~C~~C~~~I~~~---~v~-a~~~~~H~~CF~C~~C~~~L~ 62 (90)
T 2dar_A 25 TPMCAHCNQVIRGP---FLV-ALGKSWHPEEFNCAHCKNTMA 62 (90)
T ss_dssp CCBBSSSCCBCCSC---EEE-ETTEEECTTTCBCSSSCCBCS
T ss_pred CCCCccCCCEecce---EEE-ECCccccccCCccCCCCCCCC
Confidence 35699999998532 221 11222 23368899998885
No 261
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=20.99 E-value=75 Score=30.68 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=17.8
Q ss_pred CChHHHHhHHhhhcccCCeeE
Q 028248 1 MSNEEFDNLKEELMWEGSSVV 21 (211)
Q Consensus 1 ~s~eefd~lkeel~weGssv~ 21 (211)
|++||++..|++|.|...++.
T Consensus 267 l~~e~~~~~~~~l~~~~~pf~ 287 (663)
T 3kom_A 267 LSDQERASAAKELNWDYQAFE 287 (663)
T ss_dssp CCHHHHHHHHHHTTCCCCTTC
T ss_pred CCHHHHHHHHHHcCCCCCCcc
Confidence 578999999999999876653
No 262
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=20.99 E-value=56 Score=20.97 Aligned_cols=17 Identities=35% Similarity=0.548 Sum_probs=12.4
Q ss_pred cCCCCCcccceeecccc
Q 028248 157 GPCPNCGTENVSFFGTI 173 (211)
Q Consensus 157 G~CPnCg~Ev~aFfg~i 173 (211)
..||.|..++...+..+
T Consensus 41 ~~CP~Cr~~~~~~~~~~ 57 (68)
T 1chc_A 41 PTCPLCKVPVESVVHTI 57 (68)
T ss_dssp CSTTTTCCCCCCEECCC
T ss_pred CcCcCCChhhHhhhhcc
Confidence 47999998887765443
No 263
>3a1g_A RNA-directed RNA polymerase catalytic subunit; influenza virus, RNA polymerase, nucleotide-binding, nucleotidyltransferase, nucleus, RNA replication; 1.70A {Influenza a virus} PDB: 2ztt_A
Probab=20.85 E-value=94 Score=22.78 Aligned_cols=31 Identities=13% Similarity=0.370 Sum_probs=24.8
Q ss_pred hHHHHHHHHhhhcCCCccChHHHHHHHHHHhhh
Q 028248 27 EQKFLEASMAYVAGKPIMSDEEYDKLKQKLKME 59 (211)
Q Consensus 27 Eq~fLeA~~aY~~G~Pi~sD~efD~Lk~~Lk~~ 59 (211)
++.-..|.+.|-+|. |+|+||.+.+.-++..
T Consensus 43 ~rlr~dAr~d~esGr--i~k~efeeim~i~~~i 73 (80)
T 3a1g_A 43 SRARIDARIDFESGR--IKKEEFTEIMKICSTI 73 (80)
T ss_dssp HHHHHHHHHHHHHTS--SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhcc--ccHHHHHHHHHHHHHH
Confidence 456667788899996 8999999999877643
No 264
>1hf2_A MINC, septum site-determining protein MINC; cell division protein, FTSZ, bacterial cell division, beta helix; 2.2A {Thermotoga maritima} SCOP: b.80.3.1 c.102.1.1
Probab=20.64 E-value=85 Score=25.78 Aligned_cols=27 Identities=15% Similarity=0.286 Sum_probs=18.5
Q ss_pred hhhcCCCcc---------ChHHHHHHHHHHhhhCCe
Q 028248 36 AYVAGKPIM---------SDEEYDKLKQKLKMEGSE 62 (211)
Q Consensus 36 aY~~G~Pi~---------sD~efD~Lk~~Lk~~GS~ 62 (211)
.+++|.|++ +++++.+|+.-|+..|=.
T Consensus 37 ~ff~~~~vv~l~~~~~~~~~~~~~~L~~~l~~~~l~ 72 (210)
T 1hf2_A 37 GFFAKGDRISLMIENHNKHSQDIPRIVSHLRNLGLE 72 (210)
T ss_dssp GGCCTTCEEEEEETTHHHHGGGHHHHHHHHHHTTCE
T ss_pred hhhcCCcEEEEEecCCCCCHHHHHHHHHHHHHCCCE
Confidence 466777764 455788888888877743
No 265
>3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Bartonella henselae}
Probab=20.61 E-value=1.8e+02 Score=26.73 Aligned_cols=50 Identities=24% Similarity=0.490 Sum_probs=35.3
Q ss_pred CeeEEeChhhHHHHHHHHh----hhcCC---------CccChHHHHHHHHHHh---hhCCeeeeec
Q 028248 18 SSVVMLSSAEQKFLEASMA----YVAGK---------PIMSDEEYDKLKQKLK---MEGSEIVVEG 67 (211)
Q Consensus 18 ssv~~l~~~Eq~fLeA~~a----Y~~G~---------Pi~sD~efD~Lk~~Lk---~~GS~vv~~~ 67 (211)
+.+++-...-.+|++++.+ +.-|. |+++.+.+|+++.-+. .+|.+++.-|
T Consensus 307 ~rvlV~~~i~d~f~~~l~~~~~~~~vG~p~~~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG 372 (497)
T 3i44_A 307 TRMLVEQAIYDKAIKTAKDIAEKTQVGPGHQTGNHIGPVVSKEQYDKIQDLIQSGIDEGATLVTGG 372 (497)
T ss_dssp CEEEEEGGGHHHHHHHHHHHHHHCCBCCTTSCSSCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECC
T ss_pred CEEEEcHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCcCHHHHHHHHHHHHHHHHCCCEEEECC
Confidence 4445555555778887654 44454 6899999999998775 5688888766
No 266
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.37 E-value=21 Score=23.75 Aligned_cols=41 Identities=17% Similarity=0.354 Sum_probs=21.3
Q ss_pred eecCCCCCcccceeec---cccccccCCCCcCc------eeCCCCCceeE
Q 028248 155 LKGPCPNCGTENVSFF---GTILSISSGGTTNT------INCSNCGTTMV 195 (211)
Q Consensus 155 LkG~CPnCg~Ev~aFf---g~i~~v~s~~~~~~------~kC~~C~~~L~ 195 (211)
++-+|+.|+.....-- .-+...-.+..+.. .+|+.|+....
T Consensus 24 ~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~ 73 (95)
T 2ej4_A 24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFK 73 (95)
T ss_dssp SSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCS
T ss_pred CCCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccC
Confidence 4567999998764321 11111111111111 68999997653
No 267
>3d55_A Antitoxin, uncharacterized protein RV3357/MT3465; tetramer, toxin neutraliSer, toxin inhibitor; 2.13A {Mycobacterium tuberculosis} PDB: 3cto_A 3oei_A* 3oei_E*
Probab=20.33 E-value=48 Score=23.51 Aligned_cols=49 Identities=20% Similarity=0.353 Sum_probs=13.7
Q ss_pred ChHHHHhHHhhhcccCCeeEEeChhhHHHHHHHHhhhcCCCccChHHHHHHHHHH
Q 028248 2 SNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIMSDEEYDKLKQKL 56 (211)
Q Consensus 2 s~eefd~lkeel~weGssv~~l~~~Eq~fLeA~~aY~~G~Pi~sD~efD~Lk~~L 56 (211)
|-|+|+.|.|.+-.-.++ ..-++..+|....-+|+.+- ....+.++.+|
T Consensus 39 s~e~y~~l~et~~ll~~~-----~~~~~l~~a~~~~~~G~~~~-~~~l~el~~~l 87 (91)
T 3d55_A 39 SADDYDAWQETVYLLRSP-----ENARRLMEAVARDKAGHSAF-TKSVDELREMA 87 (91)
T ss_dssp EHHHHHHHHHHHHHTTSH-----HHHHHHHHHHTC--------------------
T ss_pred eHHHHhhHHHHHHHHhCh-----HHHHHHHHHHHHHHcCCCcc-CCCHHHHHHHh
Confidence 455666666654422221 11234555555677887651 22334455444
No 268
>2wme_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP complex, oxidoreductase; HET: NAP CSO; 2.10A {Pseudomonas aeruginosa} PDB: 2wox_A* 3zqa_A* 2xdr_A*
Probab=20.30 E-value=2.8e+02 Score=25.46 Aligned_cols=67 Identities=16% Similarity=0.337 Sum_probs=44.4
Q ss_pred hHHHHhHHhhhcc-----c------CCeeEEeChhhHHHHHHHHh----hhcCC---------CccChHHHHHHHHHH--
Q 028248 3 NEEFDNLKEELMW-----E------GSSVVMLSSAEQKFLEASMA----YVAGK---------PIMSDEEYDKLKQKL-- 56 (211)
Q Consensus 3 ~eefd~lkeel~w-----e------Gssv~~l~~~Eq~fLeA~~a----Y~~G~---------Pi~sD~efD~Lk~~L-- 56 (211)
|.+.|.--+.+.| . .+.+++-.....+|++++.+ ++-|. |+++.+.+|+++.-+
T Consensus 264 dAdl~~A~~~~~~~~~~n~GQ~C~a~~rv~V~~~i~d~f~~~l~~~~~~l~vGdp~~~~~~~Gpli~~~~~~rv~~~i~~ 343 (490)
T 2wme_A 264 DADLDRAADIAVMANFFSSGQVCTNGTRVFIHRSQQARFEAKVLERVQRIRLGDPQDENTNFGPLVSFPHMESVLGYIES 343 (490)
T ss_dssp TSCHHHHHHHHHHHHHGGGGCCTTCCCEEEEEGGGHHHHHHHHHHHHHTCCBSCTTSTTCCBCCCSCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhccCCCcCCCceeeccchhHHHHHHHHHHHHHHhCcCCCCccccCccCCcCCHHHHHHHHHHHHH
Confidence 4455555555555 3 34455555566778887643 44454 689999999998755
Q ss_pred -hhhCCeeeeeccc
Q 028248 57 -KMEGSEIVVEGPR 69 (211)
Q Consensus 57 -k~~GS~vv~~~pr 69 (211)
+.+|.+++.-|.+
T Consensus 344 a~~~Ga~v~~gG~~ 357 (490)
T 2wme_A 344 GKAQKARLLCGGER 357 (490)
T ss_dssp HHHTTCEEEECCSB
T ss_pred HHhcCCEEEECCcc
Confidence 5578898887655
No 269
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe}
Probab=20.26 E-value=23 Score=32.71 Aligned_cols=38 Identities=8% Similarity=0.083 Sum_probs=3.7
Q ss_pred CCCCCcccceeeccccccccCCCC---cCceeCCCCCceeEEecCc
Q 028248 158 PCPNCGTENVSFFGTILSISSGGT---TNTINCSNCGTTMVYDSNT 200 (211)
Q Consensus 158 ~CPnCg~Ev~aFfg~i~~v~s~~~---~~~~kC~~C~~~L~f~~~~ 200 (211)
-||+|++ ...+... .+. .+ .....||.||..|+.....
T Consensus 339 r~~~~~~-~~~~~~~---~~~-~~~~~~~~~~c~~~g~~~~~~e~~ 379 (441)
T 3e20_C 339 KNSEGNP-VITYMTK---EQE-EKDSTNSFLLDKDTGAEMELVSSM 379 (441)
T ss_dssp ---------CCEECS---CTT-TCCC-----------------CCE
T ss_pred ECCCCce-EEEecCc---ccc-ccccccccccCcccCccceecchh
Confidence 6999963 3334211 110 01 2345899999998754443
No 270
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.16 E-value=39 Score=19.31 Aligned_cols=8 Identities=38% Similarity=1.211 Sum_probs=4.1
Q ss_pred CCCCCccc
Q 028248 158 PCPNCGTE 165 (211)
Q Consensus 158 ~CPnCg~E 165 (211)
.|+.||..
T Consensus 14 ~C~~C~k~ 21 (46)
T 2ytr_A 14 KCNECGKA 21 (46)
T ss_dssp CCTTTCCC
T ss_pred CCCCCCCc
Confidence 35555544
No 271
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.14 E-value=31 Score=19.92 Aligned_cols=9 Identities=33% Similarity=1.018 Sum_probs=4.4
Q ss_pred eeCCCCCce
Q 028248 185 INCSNCGTT 193 (211)
Q Consensus 185 ~kC~~C~~~ 193 (211)
.+|+.|+..
T Consensus 13 ~~C~~C~k~ 21 (46)
T 2em5_A 13 HQCHECGRG 21 (46)
T ss_dssp EECSSSCCE
T ss_pred eECCcCCCc
Confidence 445555543
Done!