Query 028250
Match_columns 211
No_of_seqs 194 out of 857
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 08:35:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028250.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028250hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1616 Protein involved in Sn 100.0 4.1E-51 8.8E-56 362.7 14.7 205 5-211 60-289 (289)
2 PF04739 AMPKBI: 5'-AMP-activa 100.0 1E-36 2.2E-41 232.2 4.2 87 121-209 2-100 (100)
3 cd02859 AMPKbeta_GBD_like AMP- 99.9 5E-27 1.1E-31 171.4 9.9 79 23-101 1-79 (79)
4 cd02861 E_set_proteins_like E 99.8 8.1E-19 1.8E-23 128.3 9.6 76 24-100 2-81 (82)
5 cd02858 Esterase_N_term Estera 99.3 1.4E-11 3E-16 90.9 9.3 75 25-100 7-84 (85)
6 cd02688 E_set E or "early" set 98.8 1.8E-08 3.8E-13 71.3 8.2 67 25-91 5-74 (83)
7 cd02854 Glycogen_branching_enz 98.6 2.7E-07 5.9E-12 70.1 8.3 65 25-89 6-85 (99)
8 PF02922 CBM_48: Carbohydrate- 98.6 1.7E-07 3.7E-12 67.8 6.4 56 25-80 12-74 (85)
9 cd02860 Pullulanase_N_term Pul 97.9 5E-05 1.1E-09 57.0 7.4 63 26-90 10-85 (100)
10 PF00686 CBM_20: Starch bindin 97.7 0.00017 3.6E-09 53.8 7.0 53 24-76 2-68 (96)
11 cd02855 Glycogen_branching_enz 97.7 0.00041 8.8E-09 51.7 9.0 65 26-90 23-96 (106)
12 COG0296 GlgB 1,4-alpha-glucan 97.6 0.00012 2.7E-09 71.6 6.4 62 24-86 36-107 (628)
13 cd05808 CBM20_alpha_amylase Al 97.6 0.00031 6.7E-09 51.9 6.7 52 25-76 2-63 (95)
14 cd05818 CBM20_water_dikinase P 97.5 0.00042 9.1E-09 51.6 7.4 53 24-76 2-61 (92)
15 PLN02447 1,4-alpha-glucan-bran 97.5 0.00027 5.8E-09 70.7 7.8 61 25-86 115-190 (758)
16 cd02856 Glycogen_debranching_e 97.4 0.00082 1.8E-08 50.7 7.6 52 26-79 11-67 (103)
17 PRK12313 glycogen branching en 97.4 0.00051 1.1E-08 67.3 7.5 65 25-89 39-111 (633)
18 cd05814 CBM20_Prei4 Prei4, N-t 97.3 0.0018 3.8E-08 50.4 8.7 47 32-78 13-68 (120)
19 PRK12568 glycogen branching en 97.3 0.00064 1.4E-08 67.9 7.6 63 25-88 139-210 (730)
20 cd05820 CBM20_novamyl Novamyl 97.2 0.0025 5.5E-08 48.4 8.2 54 23-76 2-70 (103)
21 cd05809 CBM20_beta_amylase Bet 97.2 0.0017 3.7E-08 48.9 6.9 54 23-76 2-68 (99)
22 PRK14706 glycogen branching en 97.1 0.0011 2.3E-08 65.4 7.1 63 25-88 39-110 (639)
23 PRK14705 glycogen branching en 97.1 0.0013 2.8E-08 68.9 7.3 61 25-86 639-709 (1224)
24 PRK05402 glycogen branching en 97.0 0.0023 5.1E-08 63.7 7.6 63 25-87 132-203 (726)
25 cd05813 CBM20_genethonin_1 Gen 96.9 0.0037 8E-08 46.4 6.3 52 25-76 2-62 (95)
26 cd05811 CBM20_glucoamylase Glu 96.9 0.0049 1.1E-07 46.6 7.0 55 22-76 5-73 (106)
27 cd02853 MTHase_N_term Maltooli 96.7 0.0062 1.3E-07 44.3 6.6 59 26-88 10-71 (85)
28 cd02852 Isoamylase_N_term Isoa 96.7 0.0065 1.4E-07 46.8 6.8 54 26-81 9-73 (119)
29 cd05807 CBM20_CGTase CGTase, C 96.7 0.011 2.3E-07 44.6 7.7 54 23-76 2-70 (101)
30 TIGR02402 trehalose_TreZ malto 96.7 0.0071 1.5E-07 58.5 8.3 60 26-90 1-64 (542)
31 cd05817 CBM20_DSP Dual-specifi 96.7 0.009 2E-07 45.0 7.1 45 32-76 11-62 (100)
32 cd05467 CBM20 The family 20 ca 96.6 0.0091 2E-07 43.8 7.0 45 32-76 11-65 (96)
33 PRK05402 glycogen branching en 96.6 0.0051 1.1E-07 61.3 7.0 61 25-86 29-95 (726)
34 cd05810 CBM20_alpha_MTH Glucan 96.5 0.011 2.5E-07 44.4 6.5 53 24-76 1-64 (97)
35 TIGR01515 branching_enzym alph 96.4 0.0086 1.9E-07 58.7 7.3 63 25-88 29-101 (613)
36 cd05816 CBM20_DPE2_repeat2 Dis 96.2 0.017 3.8E-07 43.3 6.5 45 32-76 12-64 (99)
37 TIGR02104 pulA_typeI pullulana 95.7 0.041 8.9E-07 53.8 8.0 81 4-88 2-93 (605)
38 cd05815 CBM20_DPE2_repeat1 Dis 95.7 0.06 1.3E-06 40.3 7.1 51 26-76 4-65 (101)
39 PF03423 CBM_25: Carbohydrate 95.6 0.053 1.2E-06 40.1 6.6 54 25-78 3-70 (87)
40 cd05806 CBM20_laforin Laforin 95.3 0.094 2E-06 40.8 7.3 48 29-76 10-74 (112)
41 PLN02960 alpha-amylase 92.9 0.12 2.5E-06 52.9 4.3 53 25-77 129-198 (897)
42 PF11806 DUF3327: Domain of un 92.8 1 2.2E-05 35.3 8.7 80 25-104 3-114 (122)
43 PLN02950 4-alpha-glucanotransf 92.5 0.79 1.7E-05 47.3 9.6 56 21-76 6-74 (909)
44 PLN02950 4-alpha-glucanotransf 92.3 0.87 1.9E-05 47.0 9.7 68 19-86 148-232 (909)
45 TIGR02102 pullulan_Gpos pullul 91.4 0.94 2E-05 47.7 8.8 63 26-88 329-407 (1111)
46 TIGR02100 glgX_debranch glycog 91.3 0.63 1.4E-05 46.5 7.2 52 26-79 16-74 (688)
47 PF01357 Pollen_allerg_1: Poll 90.5 0.94 2E-05 33.0 5.7 62 19-83 9-77 (82)
48 PLN02316 synthase/transferase 90.4 0.57 1.2E-05 48.9 6.1 51 34-84 170-227 (1036)
49 PRK03705 glycogen debranching 89.2 1.3 2.8E-05 44.2 7.3 52 26-79 21-77 (658)
50 PLN02316 synthase/transferase 89.1 1.2 2.6E-05 46.6 7.2 56 21-76 488-557 (1036)
51 PRK10439 enterobactin/ferric e 88.9 2.6 5.7E-05 39.5 8.9 86 21-106 36-165 (411)
52 cd02857 CD_pullulan_degrading_ 88.8 2.9 6.3E-05 31.1 7.5 55 22-76 16-79 (116)
53 TIGR02103 pullul_strch alpha-1 87.0 1.9 4E-05 44.6 7.0 64 25-89 136-215 (898)
54 PF02903 Alpha-amylase_N: Alph 82.9 5.9 0.00013 30.3 6.7 57 21-77 20-88 (120)
55 PRK14510 putative bifunctional 79.0 4.8 0.0001 43.0 6.5 54 25-80 24-84 (1221)
56 PLN03244 alpha-amylase; Provis 77.7 2.2 4.8E-05 43.6 3.4 52 26-77 133-201 (872)
57 PLN02877 alpha-amylase/limit d 76.3 7.3 0.00016 40.6 6.7 51 25-77 223-280 (970)
58 COG3794 PetE Plastocyanin [Ene 73.2 11 0.00023 30.1 5.6 49 24-74 62-112 (128)
59 PF11896 DUF3416: Domain of un 64.6 17 0.00038 30.6 5.5 39 44-83 55-99 (187)
60 PF03370 CBM_21: Putative phos 63.8 24 0.00052 26.9 5.7 58 22-79 19-99 (113)
61 KOG0470 1,4-alpha-glucan branc 58.8 7.3 0.00016 39.4 2.5 38 26-64 115-157 (757)
62 PRK10785 maltodextrin glucosid 53.3 69 0.0015 31.5 8.2 60 20-79 17-87 (598)
63 TIGR02657 amicyanin amicyanin. 50.0 33 0.00071 24.5 4.2 48 25-73 20-69 (83)
64 KOG0045 Cytosolic Ca2+-depende 47.9 15 0.00033 36.5 2.7 26 66-91 115-143 (612)
65 TIGR02375 pseudoazurin pseudoa 46.2 61 0.0013 25.1 5.4 49 23-73 22-71 (116)
66 PF08308 PEGA: PEGA domain; I 34.8 1.1E+02 0.0025 20.6 4.9 42 27-79 5-46 (71)
67 PF13473 Cupredoxin_1: Cupredo 34.3 85 0.0018 23.1 4.4 19 55-73 72-91 (104)
68 TIGR03102 halo_cynanin halocya 34.0 1.4E+02 0.0031 23.1 5.8 18 55-73 82-99 (115)
69 PF03422 CBM_6: Carbohydrate b 32.4 49 0.0011 24.7 2.9 20 60-79 92-111 (125)
70 TIGR03009 plancto_dom_2 Planct 32.3 64 0.0014 27.8 3.9 17 74-90 67-85 (210)
71 PF14347 DUF4399: Domain of un 31.8 77 0.0017 23.4 3.8 30 58-88 52-81 (87)
72 cd00503 Frataxin Frataxin is a 30.7 29 0.00063 26.5 1.4 20 65-85 64-83 (105)
73 COG5227 SMT3 Ubiquitin-like pr 30.4 53 0.0011 25.0 2.7 26 69-94 62-87 (103)
74 TIGR03422 mito_frataxin fratax 30.4 34 0.00073 25.9 1.7 18 67-85 66-83 (97)
75 PLN00115 pollen allergen group 30.4 1.7E+02 0.0037 23.0 5.6 51 31-83 44-98 (118)
76 PRK00446 cyaY frataxin-like pr 30.1 76 0.0016 24.3 3.6 32 50-85 48-82 (105)
77 KOG1263 Multicopper oxidases [ 27.3 38 0.00081 33.4 1.8 33 58-90 99-136 (563)
78 COG3397 Uncharacterized protei 27.2 3.3E+02 0.0071 24.9 7.5 71 25-104 115-207 (308)
79 PF10634 Iron_transport: Fe2+ 26.1 2E+02 0.0044 23.6 5.6 35 37-77 81-117 (151)
80 PF01491 Frataxin_Cyay: Fratax 24.7 1.3E+02 0.0028 23.0 4.0 32 52-84 53-85 (109)
81 TIGR01159 DRP1 density-regulat 24.4 83 0.0018 26.3 3.1 21 184-204 87-107 (173)
82 TIGR01160 SUI1_MOF2 translatio 22.9 91 0.002 24.2 2.9 20 185-204 25-44 (110)
83 PF07495 Y_Y_Y: Y_Y_Y domain; 22.4 80 0.0017 20.8 2.2 22 62-83 33-57 (66)
84 TIGR03503 conserved hypothetic 22.0 1.3E+02 0.0028 28.3 4.2 23 57-79 171-195 (374)
85 smart00230 CysPc Calpain-like 21.2 75 0.0016 28.6 2.4 25 65-89 98-125 (318)
86 TIGR03421 FeS_CyaY iron donor 21.2 1.2E+02 0.0026 23.0 3.2 21 64-85 60-80 (102)
No 1
>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.1e-51 Score=362.72 Aligned_cols=205 Identities=42% Similarity=0.694 Sum_probs=182.2
Q ss_pred CCccccCCC-CCCCCCCCCceeEEEEecCCCCeEEEEeccCCCccceeeeecCCc---EEEEEECCCccEEEEEEEcCee
Q 028250 5 NLSWMQTSS-GYEDMGDGVGIPTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKD---FTIMKVLPSGVYQYRFLVDGLW 80 (211)
Q Consensus 5 ~~~~~~~~~-~~~~~~~~~~vpv~f~w~~~g~~V~V~GsF~nW~~~~~L~k~~~~---f~~~~~Lp~G~y~YKFiVDG~w 80 (211)
...|....+ .+........+||+|+|.+|++.|||+|||.+|+.+++|.++++. |+++++|++|.|+|||+|||+|
T Consensus 60 ~~~~s~~~~~~~~~~~~~~~~pvvi~W~~gg~~v~v~gS~~nWk~~~~l~~~~~~~~~f~~~~dL~~g~~~~kf~vdge~ 139 (289)
T KOG1616|consen 60 EGSWSQSQTGEDNEKDREQGRPTVIRWSQGGKEVYVDGSFGNWKTKIPLVRSGKNVGGFSTILDLPPGEHEYKFIVDGEW 139 (289)
T ss_pred cccccccccccccccccccCCceEEEecCCCceEEEecccccccccccceecCCCcccceeeEecCCceEEEEEecCCce
Confidence 445555443 334444566899999999999999999999999999999998766 9999999999999999999999
Q ss_pred ccCCCCCceeCCCCceeceEeeccCC--CCccccccCC----------CCCCCC-------CCCCccccCCcccccCC--
Q 028250 81 KYAPDLPSTQDDDGNVYNILDLQEYV--PDDLESISSF----------EPPQSP-------ETSYNNLQLTAEDFAKE-- 139 (211)
Q Consensus 81 ~~dp~~p~~~d~~G~~nNvi~V~~~~--p~~~~~~~~~----------~~~~sp-------~~~y~~~~p~~~~~~~~-- 139 (211)
++|+++|+++|+.|++||+|+|.+.+ .+.++.+.++ +.+..+ .++|+|+.|..+++.+.
T Consensus 140 ~~s~~~pta~d~~Gn~~N~i~v~~~~~v~~~~~~l~~~~~~~~~~~s~e~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 219 (289)
T KOG1616|consen 140 RHDPDLPTAEDSLGNLNNILEVQDPDEVFEVFQALEEDLPSSNHSESSEVPNLPEELEAKPLGSYTQEKPAVEDEEKAMA 219 (289)
T ss_pred ecCCCCcccccccCCcccceEecCccccchhhhhhhhhccccccccccccCCCccccccccccccccccchhhcchhccc
Confidence 99999999999999999999999987 7777666555 444444 89999999998877766
Q ss_pred CCCCChhcccccCCCCCCCCCCCCCCCCCCeeeecceEeecccCCCcEEEEEeeeeecceeeEEEEEeecCC
Q 028250 140 PPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSMQR 211 (211)
Q Consensus 140 PP~lP~~L~~~iLN~~~~~~~~~~~Lp~P~HvvLNHLy~~si~~~~~vl~l~~T~Ry~~KyvTtvlYkp~~~ 211 (211)
||.|||||.++|||+.+..+|++..|++|+||+|||||+++|| ++++++++||||++||||++||||+++
T Consensus 220 ~p~lpp~l~~v~lnk~~~~~~~~~~~~~p~hv~lnhl~~~sik--~~~~~~~~~~r~~~k~vt~~lyk~~~~ 289 (289)
T KOG1616|consen 220 PPVLPPHLLQVILNKDTQVSCDPALLPEPNHVALNHLYALSIK--DGVMVLSFTHRYKKKYVTTGLYKPLQL 289 (289)
T ss_pred CCCCCcchheeeccccccccccccccCCccchhhhhhhhhccC--CCeeEecceecccccceeEEeeeeccC
Confidence 9999999999999999999999999999999999999999984 799999999999999999999999975
No 2
>PF04739 AMPKBI: 5'-AMP-activated protein kinase beta subunit, interation domain; InterPro: IPR006828 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This interaction domain is found in the beta subunit of the 5-AMP-activated protein kinase complex, and its yeast homologues Sip1, Sip2 and Gal83, which are found in the SNF1 kinase complex []. This region is sufficient for interaction of this subunit with the kinase complex, but is not solely responsible for the interaction, and the interaction partner is not known []. The isoamylase domain (IPR004193 from INTERPRO) is sometimes found associated with proteins that contain this C-terminal domain.; GO: 0005515 protein binding; PDB: 2QRE_D 2OOY_B 2OOX_B 2QRD_D 2QR1_D 2QRC_D 1Z0N_C 4EAK_B 4EAL_B 4EAG_B ....
Probab=100.00 E-value=1e-36 Score=232.24 Aligned_cols=87 Identities=56% Similarity=0.881 Sum_probs=66.3
Q ss_pred CCCCCCccccCCc------------ccccCCCCCCChhcccccCCCCCCCCCCCCCCCCCCeeeecceEeecccCCCcEE
Q 028250 121 SPETSYNNLQLTA------------EDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVV 188 (211)
Q Consensus 121 sp~~~y~~~~p~~------------~~~~~~PP~lP~~L~~~iLN~~~~~~~~~~~Lp~P~HvvLNHLy~~si~~~~~vl 188 (211)
+++++|++++|.. ++|+++||.||+||+++|||++....++++.||+|+||||||||+++|| +|||
T Consensus 2 ~p~~~ys~~iP~~~~~~~~~~~~~~~~~~~~PP~lPp~L~~~iLN~~~~~~~~~~~Lp~P~HV~LNHL~~~~ik--~~v~ 79 (100)
T PF04739_consen 2 SPESSYSSEIPENLQDDDEFEEQPEEEFAKEPPSLPPHLQKTILNKPSSSTDDPSVLPIPNHVVLNHLYTSSIK--DGVL 79 (100)
T ss_dssp -----EESS--HCCCSCCCCCHHH--TCCCS--BS-GGGCSEECCSCTCHHSHTTB-----GGGTTBEEEEEEB--TTEE
T ss_pred CCCcCccccCCccccchhhhhhhhcccccCCCCCCChhhCeeccCCCCcccCccccCCCCCEEEecceEEcccC--CCeE
Confidence 5788999988863 4789999999999999999999888899999999999999999999985 7999
Q ss_pred EEEeeeeecceeeEEEEEeec
Q 028250 189 ALGSTHRFLAKYVTVVLYKSM 209 (211)
Q Consensus 189 ~l~~T~Ry~~KyvTtvlYkp~ 209 (211)
|+|+|||||+||||||||||+
T Consensus 80 al~~T~Ryk~KyVT~vlYkP~ 100 (100)
T PF04739_consen 80 ALGTTHRYKSKYVTTVLYKPI 100 (100)
T ss_dssp EEEEEEEETTEEEEEEEEEE-
T ss_pred EEEEEEEecceEEEEEEecCC
Confidence 999999999999999999996
No 3
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=99.94 E-value=5e-27 Score=171.41 Aligned_cols=79 Identities=52% Similarity=1.028 Sum_probs=75.5
Q ss_pred ceeEEEEecCCCCeEEEEeccCCCccceeeeecCCcEEEEEECCCccEEEEEEEcCeeccCCCCCceeCCCCceeceEe
Q 028250 23 GIPTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILD 101 (211)
Q Consensus 23 ~vpv~f~w~~~g~~V~V~GsF~nW~~~~~L~k~~~~f~~~~~Lp~G~y~YKFiVDG~w~~dp~~p~~~d~~G~~nNvi~ 101 (211)
.+||+|+|.+++++|+|+|||++|+..++|.|+++.|++++.||+|.|+|||+|||+|++|+++|++.|++|+.||+|+
T Consensus 1 ~~~v~f~~~~~a~~V~v~G~F~~W~~~~pm~~~~~~~~~~~~L~~g~y~YkF~Vdg~w~~d~~~~~~~d~~G~~NN~i~ 79 (79)
T cd02859 1 MVPTTFVWPGGGKEVYVTGSFDNWKKKIPLEKSGKGFSATLRLPPGKYQYKFIVDGEWRHSPDLPTETDDEGNVNNVID 79 (79)
T ss_pred CeEEEEEEcCCCcEEEEEEEcCCCCccccceECCCCcEEEEEcCCCCEEEEEEECCEEEeCCCCCccCCCCCcEeeeEC
Confidence 3799999999999999999999999879999988889999999999999999999999999999999999999999985
No 4
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.79 E-value=8.1e-19 Score=128.28 Aligned_cols=76 Identities=28% Similarity=0.658 Sum_probs=67.6
Q ss_pred eeEEEEecC-CCCeEEEEeccCCCccceeeeecC-CcEEEEEECCCccEEEEEEEcCeec-cCCCCCc-eeCCCCceece
Q 028250 24 IPTMITWSH-DGCEVAVEGSWDNWKTRIALQRSG-KDFTIMKVLPSGVYQYRFLVDGLWK-YAPDLPS-TQDDDGNVYNI 99 (211)
Q Consensus 24 vpv~f~w~~-~g~~V~V~GsF~nW~~~~~L~k~~-~~f~~~~~Lp~G~y~YKFiVDG~w~-~dp~~p~-~~d~~G~~nNv 99 (211)
++++|+|.. ++++|+|+|+|++|+ ..+|.+.+ +.|++++.|++|.|+|||+|||.|. .||..+. ..|..|+.|++
T Consensus 2 ~~vtf~~~ap~a~~V~v~G~fn~W~-~~~m~~~~~G~w~~~~~l~~G~y~Ykf~vdg~~~~~DP~~~~~~~~~~g~~n~v 80 (82)
T cd02861 2 VPVVFAYRGPEADSVYLAGSFNNWN-AIPMEREGDGLWVVTVELRPGRYEYKFVVDGEWVIVDPNAAAYVDDGFGGKNAV 80 (82)
T ss_pred ccEEEEEECCCCCEEEEEeECCCCC-cccCEECCCCcEEEEEeCCCCcEEEEEEECCEEeeCCCCCCceecCCCCccceE
Confidence 589999876 459999999999998 47999876 5699999999999999999999998 9999986 67788999988
Q ss_pred E
Q 028250 100 L 100 (211)
Q Consensus 100 i 100 (211)
|
T Consensus 81 ~ 81 (82)
T cd02861 81 F 81 (82)
T ss_pred c
Confidence 7
No 5
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.31 E-value=1.4e-11 Score=90.86 Aligned_cols=75 Identities=24% Similarity=0.447 Sum_probs=61.5
Q ss_pred eEEEE-ecCCCCeEEEEeccCCCccceeeeecCC-cEEEEE-ECCCccEEEEEEEcCeeccCCCCCceeCCCCceeceE
Q 028250 25 PTMIT-WSHDGCEVAVEGSWDNWKTRIALQRSGK-DFTIMK-VLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNIL 100 (211)
Q Consensus 25 pv~f~-w~~~g~~V~V~GsF~nW~~~~~L~k~~~-~f~~~~-~Lp~G~y~YKFiVDG~w~~dp~~p~~~d~~G~~nNvi 100 (211)
.++|+ |.+.+++|.|.|+|++|.. .+|.+.++ .|++++ .|.+|.|+|+|+|||.++.||..+...-..+...|.+
T Consensus 7 ~v~F~vwAP~A~~V~L~~~~~~~~~-~~m~~~~~G~W~~~v~~l~~g~Y~Y~~~vdg~~~~DP~s~~~~~~~~~~~~~~ 84 (85)
T cd02858 7 TVTFRLFAPKANEVQVRGSWGGAGS-HPMTKDEAGVWSVTTGPLAPGIYTYSFLVDGVRVIDPSNPTTKPGRQVDTSGV 84 (85)
T ss_pred cEEEEEECCCCCEEEEEeecCCCcc-EeCeECCCeEEEEEECCCCCcEEEEEEEECCeEecCCCCCceeecccccceee
Confidence 47886 9999999999999998875 78988764 599988 4888899999999999999999998664455544443
No 6
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.85 E-value=1.8e-08 Score=71.33 Aligned_cols=67 Identities=22% Similarity=0.364 Sum_probs=55.8
Q ss_pred eEEEE-ecCCCCeEEEEeccCCCccceeeeecC-CcEEEEEECCC-ccEEEEEEEcCeeccCCCCCceeC
Q 028250 25 PTMIT-WSHDGCEVAVEGSWDNWKTRIALQRSG-KDFTIMKVLPS-GVYQYRFLVDGLWKYAPDLPSTQD 91 (211)
Q Consensus 25 pv~f~-w~~~g~~V~V~GsF~nW~~~~~L~k~~-~~f~~~~~Lp~-G~y~YKFiVDG~w~~dp~~p~~~d 91 (211)
.+.|+ |.+++++|.|.+.|++|...++|.+.. +.|++.+.+.. |.|.|+|+|||.|..++.++.+.+
T Consensus 5 ~v~f~v~ap~a~~v~l~~~~~~~~~~~~~~~~~~g~w~~~v~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~ 74 (83)
T cd02688 5 GVTFTVRGPKAQRVSLAGSFNGDTQLIPMTKVEDGYWEVELPLPSPGKYQYKYVLDGGKGPDEGEPKADE 74 (83)
T ss_pred cEEEEEECCCCCEEEEEEEECCCCCcccCEECCCceEEEEEcCCCCCCeEEEEEEeCCCCCCCCChhhhc
Confidence 47786 667889999999999866678998765 56999999887 999999999999998887755444
No 7
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=98.59 E-value=2.7e-07 Score=70.12 Aligned_cols=65 Identities=20% Similarity=0.433 Sum_probs=48.5
Q ss_pred eEEEE-ecCCCCeEEEEeccCCCcc-ceeeeecC-CcEEEEEEC--------CCc-cEEEEEEE-cCee--ccCCCCCce
Q 028250 25 PTMIT-WSHDGCEVAVEGSWDNWKT-RIALQRSG-KDFTIMKVL--------PSG-VYQYRFLV-DGLW--KYAPDLPST 89 (211)
Q Consensus 25 pv~f~-w~~~g~~V~V~GsF~nW~~-~~~L~k~~-~~f~~~~~L--------p~G-~y~YKFiV-DG~w--~~dp~~p~~ 89 (211)
-++|+ |.+.+++|+|+|+||+|+. ..+|.|.+ +.|++.+.. +.| .|+|++.. ||+| +.||-.-.+
T Consensus 6 g~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~~~DPyA~~~ 85 (99)
T cd02854 6 GVTYREWAPNAEEVYLIGDFNNWDRNAHPLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWIDRIPAWIKYV 85 (99)
T ss_pred eEEEEEECCCCCEEEEEccCCCCCCcCcccEECCCCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEEEcCcceeEE
Confidence 36775 9999999999999999986 46899864 459998764 455 56666666 7875 566655443
No 8
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=98.57 E-value=1.7e-07 Score=67.77 Aligned_cols=56 Identities=20% Similarity=0.459 Sum_probs=44.6
Q ss_pred eEEEE-ecCCCCeEEEEeccCC-Ccc-ceeeee--cCCcEEEEEE--CCCccEEEEEEEcCee
Q 028250 25 PTMIT-WSHDGCEVAVEGSWDN-WKT-RIALQR--SGKDFTIMKV--LPSGVYQYRFLVDGLW 80 (211)
Q Consensus 25 pv~f~-w~~~g~~V~V~GsF~n-W~~-~~~L~k--~~~~f~~~~~--Lp~G~y~YKFiVDG~w 80 (211)
-+.|+ |.+.+++|.|.+.|++ |.. .++|.+ .++.|++++. +++|.+.|+|.|||..
T Consensus 12 ~~~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~~~~G~w~~~~~~~~~~g~~~Y~y~i~~~~ 74 (85)
T PF02922_consen 12 GVTFRVWAPNAKSVELVLYFNGSWPAEEYPMTRKDDDGVWEVTVPGDLPPGGYYYKYRIDGDD 74 (85)
T ss_dssp EEEEEEE-TTESEEEEEEETTTSSEEEEEEEEEECTTTEEEEEEEGCGTTTT-EEEEEEEETT
T ss_pred EEEEEEECCCCCEEEEEEEeeecCCCceEEeeecCCCCEEEEEEcCCcCCCCEEEEEEEEeCC
Confidence 57775 9999999999999999 875 478984 3567999998 8889888999988654
No 9
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.92 E-value=5e-05 Score=56.95 Aligned_cols=63 Identities=14% Similarity=0.158 Sum_probs=47.9
Q ss_pred EEE-EecCCCCeEEEEeccCCCc-----cceeeeec-CCcEEEEEE-CCCccEEEEEEEcCe-----eccCCCCCcee
Q 028250 26 TMI-TWSHDGCEVAVEGSWDNWK-----TRIALQRS-GKDFTIMKV-LPSGVYQYRFLVDGL-----WKYAPDLPSTQ 90 (211)
Q Consensus 26 v~f-~w~~~g~~V~V~GsF~nW~-----~~~~L~k~-~~~f~~~~~-Lp~G~y~YKFiVDG~-----w~~dp~~p~~~ 90 (211)
+.| .|.+.+++|.|.. |++|. .+++|.+. ++.|++.+. +.+|. .|+|.|+|. .+.||......
T Consensus 10 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~~~~gvw~~~v~~~~~g~-~Y~y~i~~~~~~~~~~~DPyA~~~~ 85 (100)
T cd02860 10 TTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKRGENGVWSVTLDGDLEGY-YYLYEVKVYKGETNEVVDPYAKALS 85 (100)
T ss_pred EEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeecCCCCEEEEEeCCccCCc-EEEEEEEEeceEEEEEcCcccEeEe
Confidence 678 4999999999998 88886 45789874 466998876 45565 488888875 77888766544
No 10
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=97.69 E-value=0.00017 Score=53.75 Aligned_cols=53 Identities=23% Similarity=0.516 Sum_probs=43.2
Q ss_pred eeEEEEec---CCCCeEEEEeccC---CCcc--ceeeeecC-----CcEEEEEECCCc-cEEEEEEE
Q 028250 24 IPTMITWS---HDGCEVAVEGSWD---NWKT--RIALQRSG-----KDFTIMKVLPSG-VYQYRFLV 76 (211)
Q Consensus 24 vpv~f~w~---~~g~~V~V~GsF~---nW~~--~~~L~k~~-----~~f~~~~~Lp~G-~y~YKFiV 76 (211)
|.|+|+-. ..|+.|+|+||.. +|+. .++|...+ ..|++.+.||.| .++|||++
T Consensus 2 v~V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~i 68 (96)
T PF00686_consen 2 VSVTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPAGTPFEYKYVI 68 (96)
T ss_dssp EEEEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred EEEEEEEEeECCCCCEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcCCCEEEEEEEE
Confidence 56777654 4689999999997 8996 57888753 469999999988 69999999
No 11
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=97.68 E-value=0.00041 Score=51.70 Aligned_cols=65 Identities=25% Similarity=0.504 Sum_probs=43.0
Q ss_pred EEEE-ecCCCCeEEEEeccCCCcc-ceeeeecC--CcEEEEEE-CCCcc-EEEEEEEc-Ce--eccCCCCCcee
Q 028250 26 TMIT-WSHDGCEVAVEGSWDNWKT-RIALQRSG--KDFTIMKV-LPSGV-YQYRFLVD-GL--WKYAPDLPSTQ 90 (211)
Q Consensus 26 v~f~-w~~~g~~V~V~GsF~nW~~-~~~L~k~~--~~f~~~~~-Lp~G~-y~YKFiVD-G~--w~~dp~~p~~~ 90 (211)
++|+ |.+++++|.|.++|++|.. ..+|.+.+ +.|.+.+. +++|. |+|++..+ |. .+.||....++
T Consensus 23 ~~frv~aP~A~~V~l~~~~~~~~~~~~~m~~~~~~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~~~~DPYa~~~~ 96 (106)
T cd02855 23 VRFAVWAPNARRVSVVGDFNGWDGRRHPMRRRGDSGVWELFIPGLGEGELYKYEILGADGHLPLKADPYAFYSE 96 (106)
T ss_pred EEEEEECCCCCEEEEEEECCCCCCcceecEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEEEeeCCCceeeE
Confidence 5675 9999999999999999964 45888743 45888775 55664 44444443 23 34555544333
No 12
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=97.59 E-value=0.00012 Score=71.60 Aligned_cols=62 Identities=16% Similarity=0.419 Sum_probs=48.0
Q ss_pred eeEEEE-ecCCCCeEEEEeccCCCcc-ceeeeec--CCcEEEEEE-CCCccEEEEEEEcCee-----ccCCCC
Q 028250 24 IPTMIT-WSHDGCEVAVEGSWDNWKT-RIALQRS--GKDFTIMKV-LPSGVYQYRFLVDGLW-----KYAPDL 86 (211)
Q Consensus 24 vpv~f~-w~~~g~~V~V~GsF~nW~~-~~~L~k~--~~~f~~~~~-Lp~G~y~YKFiVDG~w-----~~dp~~ 86 (211)
-.|.|+ |.+.++.|.|.|+||+|.. +.+|... .+.|.+++. +++| ++|||.+++.. +.||..
T Consensus 36 ~~~~F~vWAP~a~~V~vvgdfn~w~~~~~~~~~~~~~G~we~~vp~~~~G-~~Yky~l~~~~g~~~~~~DP~a 107 (628)
T COG0296 36 SGVRFRVWAPNARRVSLVGDFNDWDGRRMPMRDRKESGIWELFVPGAPPG-TRYKYELIDPSGQLRLKADPYA 107 (628)
T ss_pred CceEEEEECCCCCeEEEEeecCCccceecccccCCCCceEEEeccCCCCC-CeEEEEEeCCCCceeeccCchh
Confidence 467885 9999999999999999997 2344322 245999998 9999 99999997653 666644
No 13
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=97.55 E-value=0.00031 Score=51.86 Aligned_cols=52 Identities=23% Similarity=0.407 Sum_probs=39.8
Q ss_pred eEEEEec---CCCCeEEEEec---cCCCcc--ceeeeecC-CcEEEEEECCCc-cEEEEEEE
Q 028250 25 PTMITWS---HDGCEVAVEGS---WDNWKT--RIALQRSG-KDFTIMKVLPSG-VYQYRFLV 76 (211)
Q Consensus 25 pv~f~w~---~~g~~V~V~Gs---F~nW~~--~~~L~k~~-~~f~~~~~Lp~G-~y~YKFiV 76 (211)
+++|+-. ..|+.|+|+|+ +.+|+. .++|...+ ..|++.+.||.| .++|||++
T Consensus 2 ~v~F~v~~~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~~~~~W~~~v~l~~~~~~eYKy~~ 63 (95)
T cd05808 2 AVTFNVTATTVWGQNVYVVGNVPELGNWSPANAVALSAATYPVWSGTVDLPAGTAIEYKYIK 63 (95)
T ss_pred eEEEEEEEECCCCCEEEEEeCcHHhCCCChhhCccCCCCCCCCEEEEEEeCCCCeEEEEEEE
Confidence 4555432 36899999995 779986 35787643 569999999987 79999997
No 14
>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=97.54 E-value=0.00042 Score=51.64 Aligned_cols=53 Identities=21% Similarity=0.461 Sum_probs=42.9
Q ss_pred eeEEEEec---CCCCeEEEEecc---CCCccceeeeecCCcEEEEEECCCc-cEEEEEEE
Q 028250 24 IPTMITWS---HDGCEVAVEGSW---DNWKTRIALQRSGKDFTIMKVLPSG-VYQYRFLV 76 (211)
Q Consensus 24 vpv~f~w~---~~g~~V~V~GsF---~nW~~~~~L~k~~~~f~~~~~Lp~G-~y~YKFiV 76 (211)
+.++|+-. .-|+.++|+|+- -+|++..+|.-..+.|++.+.|+.| ..+|||++
T Consensus 2 ~~v~F~~~~~~~~Gq~l~v~G~~~~LG~W~~~~~l~~~~~~W~~~~~l~~~~~ieyKy~~ 61 (92)
T cd05818 2 VKLQVRLDHQVKFGEHVAILGSTKELGSWKKKVPMNWTENGWVCDLELDGGELVEYKFVI 61 (92)
T ss_pred EEEEEEEEEEcCCCCEEEEEeChHHHCCCCCCCccccCCCCEEEEEEeCCCCcEEEEEEE
Confidence 45556543 358999999987 4899877887766779999999988 79999998
No 15
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=97.52 E-value=0.00027 Score=70.71 Aligned_cols=61 Identities=15% Similarity=0.348 Sum_probs=45.1
Q ss_pred eEEEE-ecCCCCeEEEEeccCCCcc-ceeeeecC-CcEEEEEE-------CCCccEEEEEEEc---Ce--eccCCCC
Q 028250 25 PTMIT-WSHDGCEVAVEGSWDNWKT-RIALQRSG-KDFTIMKV-------LPSGVYQYRFLVD---GL--WKYAPDL 86 (211)
Q Consensus 25 pv~f~-w~~~g~~V~V~GsF~nW~~-~~~L~k~~-~~f~~~~~-------Lp~G~y~YKFiVD---G~--w~~dp~~ 86 (211)
-++|+ |.+.+++|+|+|+||+|.. ..+|.+.+ +.|++.+. ++.|. .|||.|. |. .+.||-.
T Consensus 115 g~~FrvWAP~A~~V~LvGdFN~W~~~~~~M~~~~~GvWe~~ip~~~g~~~~~~G~-~Yky~i~~~~g~~~~r~dpya 190 (758)
T PLN02447 115 GITYREWAPGAKAAALIGDFNNWNPNAHWMTKNEFGVWEIFLPDADGSPAIPHGS-RVKIRMETPDGRWVDRIPAWI 190 (758)
T ss_pred CEEEEEECCCCCEEEEEEecCCCCCCccCceeCCCCEEEEEECCccccccCCCCC-EEEEEEEeCCCcEEeecCchH
Confidence 46785 9999999999999999986 46898865 46998875 33443 6777774 54 4566644
No 16
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.41 E-value=0.00082 Score=50.72 Aligned_cols=52 Identities=19% Similarity=0.224 Sum_probs=40.1
Q ss_pred EEE-EecCCCCeEEEEeccCCCc--cceeeeecC-CcEEEEE-ECCCccEEEEEEEcCe
Q 028250 26 TMI-TWSHDGCEVAVEGSWDNWK--TRIALQRSG-KDFTIMK-VLPSGVYQYRFLVDGL 79 (211)
Q Consensus 26 v~f-~w~~~g~~V~V~GsF~nW~--~~~~L~k~~-~~f~~~~-~Lp~G~y~YKFiVDG~ 79 (211)
+.| .|.+.+++|.|.. |++|. ..++|.+.+ +.|.+.+ .+.+|. .|+|.|||.
T Consensus 11 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~~GvW~~~v~~~~~g~-~Y~y~i~g~ 67 (103)
T cd02856 11 CNFAVHSENATRIELCL-FDEDGSETRLPLTEEYGGVWHGFLPGIKAGQ-RYGFRVHGP 67 (103)
T ss_pred eEEEEECCCCCEEEEEE-EeCCCCEEEEEcccccCCEEEEEECCCCCCC-EEEEEECCc
Confidence 567 5999999999998 66664 357898764 5699887 456665 799999994
No 17
>PRK12313 glycogen branching enzyme; Provisional
Probab=97.37 E-value=0.00051 Score=67.32 Aligned_cols=65 Identities=23% Similarity=0.388 Sum_probs=47.0
Q ss_pred eEEEE-ecCCCCeEEEEeccCCCcc-ceeeeecC-CcEEEEEE-CCCc-cEEEEEEE-cCee--ccCCCCCce
Q 028250 25 PTMIT-WSHDGCEVAVEGSWDNWKT-RIALQRSG-KDFTIMKV-LPSG-VYQYRFLV-DGLW--KYAPDLPST 89 (211)
Q Consensus 25 pv~f~-w~~~g~~V~V~GsF~nW~~-~~~L~k~~-~~f~~~~~-Lp~G-~y~YKFiV-DG~w--~~dp~~p~~ 89 (211)
-|+|+ |.+.+++|+|+|+|++|.. ..+|.+.+ +.|.+.+. +.+| .|+|++.+ ||.| +.||.....
T Consensus 39 gv~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~DPya~~~ 111 (633)
T PRK12313 39 GTYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRRESGVWEGFIPGAKEGQLYKYHISRQDGYQVEKIDPFAFYF 111 (633)
T ss_pred cEEEEEECCCCCEEEEEEecCCCCcccccccccCCCEEEEEeCCCCCCCEEEEEEECCCCeEEecCCCceEEE
Confidence 57885 9999999999999999986 46898854 56998887 4455 56666644 5664 456554433
No 18
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=97.32 E-value=0.0018 Score=50.42 Aligned_cols=47 Identities=34% Similarity=0.577 Sum_probs=38.9
Q ss_pred CCCCeEEEEec---cCCCcc--ceeeeec---CCcEEEEEECCCc-cEEEEEEEcC
Q 028250 32 HDGCEVAVEGS---WDNWKT--RIALQRS---GKDFTIMKVLPSG-VYQYRFLVDG 78 (211)
Q Consensus 32 ~~g~~V~V~Gs---F~nW~~--~~~L~k~---~~~f~~~~~Lp~G-~y~YKFiVDG 78 (211)
..|+.|+|+|+ +.+|+. ..+|.+. +..|++.+.||.+ .++|||++..
T Consensus 13 ~~ge~v~v~G~~~~LG~W~~~~a~~l~~~~~~~~~W~~~v~lp~~~~veYkY~~~~ 68 (120)
T cd05814 13 APGEVVAVVGSLPVLGNWQPEKAVPLEKEDDDCNLWKASIELPRGVDFQYRYFVAV 68 (120)
T ss_pred CCCCEEEEEeChHHhCCCCHHhCeeCccCCCcCCccEEEEEECCCCeEEEEEEEEE
Confidence 36899999999 889985 4688765 3569999999988 8999999953
No 19
>PRK12568 glycogen branching enzyme; Provisional
Probab=97.31 E-value=0.00064 Score=67.85 Aligned_cols=63 Identities=22% Similarity=0.505 Sum_probs=47.3
Q ss_pred eEEE-EecCCCCeEEEEeccCCCcc-ceeeeec-CCcEEEEEE-CCCccEEEEEEE---cCee--ccCCCCCc
Q 028250 25 PTMI-TWSHDGCEVAVEGSWDNWKT-RIALQRS-GKDFTIMKV-LPSGVYQYRFLV---DGLW--KYAPDLPS 88 (211)
Q Consensus 25 pv~f-~w~~~g~~V~V~GsF~nW~~-~~~L~k~-~~~f~~~~~-Lp~G~y~YKFiV---DG~w--~~dp~~p~ 88 (211)
-|.| .|.+.+++|+|+|+||+|.. ..+|.+. ++.|++.+. +.+| ..|||.| ||.+ +.||....
T Consensus 139 Gv~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~~~~GVWelfipg~~~G-~~YKYeI~~~~G~~~~k~DPYA~~ 210 (730)
T PRK12568 139 GVRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQRIGGFWELFLPRVEAG-ARYKYAITAADGRVLLKADPVARQ 210 (730)
T ss_pred cEEEEEECCCCCEEEEEEecCCCCccceecccCCCCEEEEEECCCCCC-CEEEEEEEcCCCeEeecCCCcceE
Confidence 4688 49999999999999999986 4688764 456998874 6677 3566666 7765 46775544
No 20
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=97.20 E-value=0.0025 Score=48.37 Aligned_cols=54 Identities=28% Similarity=0.500 Sum_probs=42.6
Q ss_pred ceeEEEEecC-----CCCeEEEEeccC---CCccce-----eeeec-CCcEEEEEECCCc-cEEEEEEE
Q 028250 23 GIPTMITWSH-----DGCEVAVEGSWD---NWKTRI-----ALQRS-GKDFTIMKVLPSG-VYQYRFLV 76 (211)
Q Consensus 23 ~vpv~f~w~~-----~g~~V~V~GsF~---nW~~~~-----~L~k~-~~~f~~~~~Lp~G-~y~YKFiV 76 (211)
-|||+|+-.. -|++|+|+|+-. +|.... +|... ...|++.+.||.| ..+|||++
T Consensus 2 ~~~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~~~~~~W~~~~~lp~~~~veyK~v~ 70 (103)
T cd05820 2 QIPVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLCPNWPDWFVVASVPAGTYIEFKFLK 70 (103)
T ss_pred cccEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhccccccccccCCCCCEEEEEEcCCCCcEEEEEEE
Confidence 3899998762 488999999874 899632 56543 3569999999998 79999998
No 21
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=97.17 E-value=0.0017 Score=48.88 Aligned_cols=54 Identities=22% Similarity=0.423 Sum_probs=41.1
Q ss_pred ceeEEEEec----CCCCeEEEEe---ccCCCccce-eeee--c--CCcEEEEEECCCc-cEEEEEEE
Q 028250 23 GIPTMITWS----HDGCEVAVEG---SWDNWKTRI-ALQR--S--GKDFTIMKVLPSG-VYQYRFLV 76 (211)
Q Consensus 23 ~vpv~f~w~----~~g~~V~V~G---sF~nW~~~~-~L~k--~--~~~f~~~~~Lp~G-~y~YKFiV 76 (211)
-|+|+|+-. ..|++|+|+| ++.+|.... +|.. . ...|++.+.||+| .++|||++
T Consensus 2 ~v~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~~~~~~~W~~~~~lp~~~~veyKyv~ 68 (99)
T cd05809 2 PVPQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYYNSHSNDWRGTVHLPAGRNIEFKAIK 68 (99)
T ss_pred ceEEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhccccCCCCCCEEEEEEecCCCcEEEEEEE
Confidence 478999863 2589999999 567998632 2322 1 3569999999998 79999999
No 22
>PRK14706 glycogen branching enzyme; Provisional
Probab=97.14 E-value=0.0011 Score=65.38 Aligned_cols=63 Identities=22% Similarity=0.373 Sum_probs=46.8
Q ss_pred eEEEE-ecCCCCeEEEEeccCCCcc-ceeeeecC-CcEEEEEE-CCCccEEEEEEEcC---e--eccCCCCCc
Q 028250 25 PTMIT-WSHDGCEVAVEGSWDNWKT-RIALQRSG-KDFTIMKV-LPSGVYQYRFLVDG---L--WKYAPDLPS 88 (211)
Q Consensus 25 pv~f~-w~~~g~~V~V~GsF~nW~~-~~~L~k~~-~~f~~~~~-Lp~G~y~YKFiVDG---~--w~~dp~~p~ 88 (211)
-|.|+ |.+.+++|+|.|+||+|.. ..+|.+.+ +.|.+.+. +.+| ..|||.|++ . .+.||....
T Consensus 39 Gv~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~~~GvW~~~vpg~~~g-~~Yky~I~~~~g~~~~~~DPYa~~ 110 (639)
T PRK14706 39 GVRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRLDFGFWGAFVPGARPG-QRYKFRVTGAAGQTVDKMDPYGSF 110 (639)
T ss_pred cEEEEEECCCCCEEEEEEecCCcccccccccccCCCEEEEEECCCCCC-CEEEEEEECCCCCEEeccCcceEE
Confidence 47885 9999999999999999986 46898754 56998875 3445 468888865 3 366665543
No 23
>PRK14705 glycogen branching enzyme; Provisional
Probab=97.08 E-value=0.0013 Score=68.92 Aligned_cols=61 Identities=20% Similarity=0.493 Sum_probs=46.2
Q ss_pred eEEE-EecCCCCeEEEEeccCCCcc-ceeeeec--CCcEEEEEE-CCCccEEEEEEEc---Cee--ccCCCC
Q 028250 25 PTMI-TWSHDGCEVAVEGSWDNWKT-RIALQRS--GKDFTIMKV-LPSGVYQYRFLVD---GLW--KYAPDL 86 (211)
Q Consensus 25 pv~f-~w~~~g~~V~V~GsF~nW~~-~~~L~k~--~~~f~~~~~-Lp~G~y~YKFiVD---G~w--~~dp~~ 86 (211)
-|.| .|.+.+++|+|+|+||+|.. ..+|.+. .+.|++.+. +.+|. .|||.|+ |.| +.||..
T Consensus 639 Gv~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~~~~GvW~~fipg~~~G~-~Yky~i~~~~g~~~~k~DPyA 709 (1224)
T PRK14705 639 GVSFAVWAPNAQAVRVKGDFNGWDGREHSMRSLGSSGVWELFIPGVVAGA-CYKFEILTKAGQWVEKADPLA 709 (1224)
T ss_pred eEEEEEECCCCCEEEEEEEecCCCCCcccceECCCCCEEEEEECCCCCCC-EEEEEEEcCCCcEEecCCccc
Confidence 5778 49999999999999999986 4578873 366998874 77885 6888885 443 556544
No 24
>PRK05402 glycogen branching enzyme; Provisional
Probab=96.95 E-value=0.0023 Score=63.75 Aligned_cols=63 Identities=21% Similarity=0.447 Sum_probs=45.8
Q ss_pred eEEEE-ecCCCCeEEEEeccCCCcc-ceeeeec-C-CcEEEEEE-CCCc-cEEEEEEEc-Cee--ccCCCCC
Q 028250 25 PTMIT-WSHDGCEVAVEGSWDNWKT-RIALQRS-G-KDFTIMKV-LPSG-VYQYRFLVD-GLW--KYAPDLP 87 (211)
Q Consensus 25 pv~f~-w~~~g~~V~V~GsF~nW~~-~~~L~k~-~-~~f~~~~~-Lp~G-~y~YKFiVD-G~w--~~dp~~p 87 (211)
-|+|+ |.+.+++|+|+|+||+|.. ..+|.+. + +.|.+.+. +++| .|+|++..+ |.+ +.||..-
T Consensus 132 gv~FrvwAP~A~~V~l~gdfn~w~~~~~~m~~~~~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~DPYa~ 203 (726)
T PRK05402 132 GVRFAVWAPNARRVSVVGDFNGWDGRRHPMRLRGESGVWELFIPGLGEGELYKFEILTADGELLLKADPYAF 203 (726)
T ss_pred cEEEEEECCCCCEEEEEEEcCCCCCccccceEcCCCCEEEEEeCCCCCCCEEEEEEeCCCCcEeecCCCceE
Confidence 47886 9999999999999999986 4689886 3 56988774 5667 566666654 444 4555443
No 25
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.86 E-value=0.0037 Score=46.45 Aligned_cols=52 Identities=23% Similarity=0.415 Sum_probs=39.9
Q ss_pred eEEEE--ec--CCCCeEEEEeccC---CCccceeeeec-CCcEEEEEECCCc-cEEEEEEE
Q 028250 25 PTMIT--WS--HDGCEVAVEGSWD---NWKTRIALQRS-GKDFTIMKVLPSG-VYQYRFLV 76 (211)
Q Consensus 25 pv~f~--w~--~~g~~V~V~GsF~---nW~~~~~L~k~-~~~f~~~~~Lp~G-~y~YKFiV 76 (211)
+++|+ .. .+++.++|+|+-. +|+...+|... ...|++.+.||.| ..+|||++
T Consensus 2 ~v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~~~~l~~~~~~~W~~~v~lp~~~~ieYky~~ 62 (95)
T cd05813 2 NVTFRVHYITHSDAQLVAVTGDHEELGSWHSYIPLQYVKDGFWSASVSLPVDTHVEWKFVL 62 (95)
T ss_pred eEEEEEEeeeCCCCeEEEEEcChHHHCCCCccccCcCCCCCCEEEEEEecCCCcEEEEEEE
Confidence 45554 33 3578899999763 79887888754 3469999999998 59999998
No 26
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also
Probab=96.85 E-value=0.0049 Score=46.56 Aligned_cols=55 Identities=25% Similarity=0.516 Sum_probs=42.2
Q ss_pred CceeEEEEec---CCCCeEEEEeccC---CCcc--ceeeeec-----CCcEEEEEECCCc-cEEEEEEE
Q 028250 22 VGIPTMITWS---HDGCEVAVEGSWD---NWKT--RIALQRS-----GKDFTIMKVLPSG-VYQYRFLV 76 (211)
Q Consensus 22 ~~vpv~f~w~---~~g~~V~V~GsF~---nW~~--~~~L~k~-----~~~f~~~~~Lp~G-~y~YKFiV 76 (211)
..+.|.|+-. ..|+.|+|+|+-. +|+. .++|... +..|++.+.||.| ..+|||++
T Consensus 5 ~~v~V~F~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~t~~~~~W~~~v~lp~~~~veYKy~~ 73 (106)
T cd05811 5 TTVAVTFNERVTTSYGENIKIVGSIPQLGNWDTSSAVALSASQYTSSNPLWSVTIPLPAGTSFEYKFIR 73 (106)
T ss_pred CEEEEEEEEeeEcCCCCeEEEEeCcHHHCCCChhhCcccccccCccCCCcEEEEEEeCCCCcEEEEEEE
Confidence 4577777643 4689999999864 7986 4578642 3569999999988 59999996
No 27
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=96.75 E-value=0.0062 Score=44.31 Aligned_cols=59 Identities=24% Similarity=0.264 Sum_probs=43.3
Q ss_pred EEEE-ecCCCCeEEEEeccCCCccceeeeecC-CcEEEEEECCCccEEEEEEEcC-eeccCCCCCc
Q 028250 26 TMIT-WSHDGCEVAVEGSWDNWKTRIALQRSG-KDFTIMKVLPSGVYQYRFLVDG-LWKYAPDLPS 88 (211)
Q Consensus 26 v~f~-w~~~g~~V~V~GsF~nW~~~~~L~k~~-~~f~~~~~Lp~G~y~YKFiVDG-~w~~dp~~p~ 88 (211)
+.|+ |.+.+++|.|.... |. .++|.+.+ +.|++.+..-+|. .|+|.|++ ..+.||....
T Consensus 10 ~~F~vwAP~A~~V~l~l~~--~~-~~~m~~~~~G~W~~~v~~~~g~-~Y~y~v~~~~~~~DP~a~~ 71 (85)
T cd02853 10 TRFRLWAPDAKRVTLRLDD--GE-EIPMQRDGDGWFEAEVPGAAGT-RYRYRLDDGTPVPDPASRF 71 (85)
T ss_pred EEEEEeCCCCCEEEEEecC--CC-cccCccCCCcEEEEEeCCCCCC-eEEEEECCCcCCCCCcccc
Confidence 6775 99999999999743 54 47898755 5699887633665 57777774 5888887765
No 28
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=96.70 E-value=0.0065 Score=46.81 Aligned_cols=54 Identities=24% Similarity=0.387 Sum_probs=41.6
Q ss_pred EEE-EecCCCCeEEEEeccCCCc---c--ceeeeec----CCcEEEEEE-CCCccEEEEEEEcCeec
Q 028250 26 TMI-TWSHDGCEVAVEGSWDNWK---T--RIALQRS----GKDFTIMKV-LPSGVYQYRFLVDGLWK 81 (211)
Q Consensus 26 v~f-~w~~~g~~V~V~GsF~nW~---~--~~~L~k~----~~~f~~~~~-Lp~G~y~YKFiVDG~w~ 81 (211)
+.| .|.+.+++|.|.. |++|. . +++|.+. ++.|.+.+. +.+|. .|+|.|+|.|.
T Consensus 9 ~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~~~~~g~-~Y~y~v~g~~~ 73 (119)
T cd02852 9 VNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSVNRTGDVWHVFVEGLKPGQ-LYGYRVDGPFE 73 (119)
T ss_pred EEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcccccCCEEEEEECCCCCCC-EEEEEECCCCC
Confidence 667 4999999999999 88886 2 4577654 367998774 66776 79999999754
No 29
>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific
Probab=96.69 E-value=0.011 Score=44.57 Aligned_cols=54 Identities=17% Similarity=0.332 Sum_probs=40.5
Q ss_pred ceeEEEEec----CCCCeEEEEeccC---CCccc--eeee-e----cCCcEEEEEECCCc-cEEEEEEE
Q 028250 23 GIPTMITWS----HDGCEVAVEGSWD---NWKTR--IALQ-R----SGKDFTIMKVLPSG-VYQYRFLV 76 (211)
Q Consensus 23 ~vpv~f~w~----~~g~~V~V~GsF~---nW~~~--~~L~-k----~~~~f~~~~~Lp~G-~y~YKFiV 76 (211)
-|+++|+-. ..|++|+|+|+-. +|... +.|. . ....|++.++||.| ..+|||++
T Consensus 2 ~v~v~f~v~~~~t~~Gq~l~v~Gs~~~LG~W~~~~a~~~~~~~~~~~~~~W~~~~~lp~~~~~eyK~~~ 70 (101)
T cd05807 2 QVSVRFVVNNATTQLGENVYLVGNVHELGNWDPSKAIGPFFNQVVYQYPNWYYDVSVPAGTTIEFKFIK 70 (101)
T ss_pred cEEEEEEEeccccCCCCEEEEEECHHHHCCCChHHccccccccCCCcCCcEEEEEEcCCCCcEEEEEEE
Confidence 478888754 2589999999874 89964 3232 2 22469999999998 79999998
No 30
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=96.66 E-value=0.0071 Score=58.46 Aligned_cols=60 Identities=20% Similarity=0.253 Sum_probs=47.5
Q ss_pred EEEE-ecCCCCeEEEEeccCCCccceeeeecCC-cEEEEEE-CCCccEEEEEEEcC-eeccCCCCCcee
Q 028250 26 TMIT-WSHDGCEVAVEGSWDNWKTRIALQRSGK-DFTIMKV-LPSGVYQYRFLVDG-LWKYAPDLPSTQ 90 (211)
Q Consensus 26 v~f~-w~~~g~~V~V~GsF~nW~~~~~L~k~~~-~f~~~~~-Lp~G~y~YKFiVDG-~w~~dp~~p~~~ 90 (211)
|+|+ |.+.+++|.|.+. ++ ..+|.+.++ .|++++. +.+| +.|+|.||| ..+.||......
T Consensus 1 v~FrlwAP~A~~V~L~l~---~~-~~~m~k~~~GvW~~~v~~~~~G-~~Y~y~v~g~~~v~DPya~~~~ 64 (542)
T TIGR02402 1 VRFRLWAPTAASVKLRLN---GA-LHAMQRLGDGWFEITVPPVGPG-DRYGYVLDDGTPVPDPASRRQP 64 (542)
T ss_pred CEEEEECCCCCEEEEEeC---CC-EEeCeECCCCEEEEEECCCCCC-CEEEEEEeeeEEecCccccccc
Confidence 4675 9999999999973 33 578998764 6999886 6778 789999999 688998877643
No 31
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.66 E-value=0.009 Score=44.96 Aligned_cols=45 Identities=24% Similarity=0.505 Sum_probs=36.6
Q ss_pred CCCCeEEEEecc---CCCcc--ceeeeec-CCcEEEEEECCCc-cEEEEEEE
Q 028250 32 HDGCEVAVEGSW---DNWKT--RIALQRS-GKDFTIMKVLPSG-VYQYRFLV 76 (211)
Q Consensus 32 ~~g~~V~V~GsF---~nW~~--~~~L~k~-~~~f~~~~~Lp~G-~y~YKFiV 76 (211)
..|+.|+|+|+- -+|+. .++|... +..|++.+.||.| .++|||+|
T Consensus 11 ~~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~~~~~W~~~v~lp~~~~veYKY~i 62 (100)
T cd05817 11 QFGEAVYISGNCNQLGNWNPSKAKRMQWNEGDLWTVDVGIPESVYIEYKYFV 62 (100)
T ss_pred CCCCEEEEEeCcHHHCCCCccccCcccCCCCCCEEEEEEECCCCcEEEEEEE
Confidence 468999999984 58996 4578754 4569999999988 69999998
No 32
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.65 E-value=0.0091 Score=43.77 Aligned_cols=45 Identities=33% Similarity=0.547 Sum_probs=37.2
Q ss_pred CCCCeEEEEeccC---CCcc--ceeeeecC--CcEEEEEECCC--c-cEEEEEEE
Q 028250 32 HDGCEVAVEGSWD---NWKT--RIALQRSG--KDFTIMKVLPS--G-VYQYRFLV 76 (211)
Q Consensus 32 ~~g~~V~V~GsF~---nW~~--~~~L~k~~--~~f~~~~~Lp~--G-~y~YKFiV 76 (211)
..|+.++|+|+.. +|+. .++|...+ +.|++.+.++. | .++|||++
T Consensus 11 ~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~W~~~v~~~~~~~~~~~yKy~~ 65 (96)
T cd05467 11 QFGQSVYVVGSHPELGNWDPAKALRLNTSNSYPLWTGEIPLPAPEGQVIEYKYVI 65 (96)
T ss_pred CCCCEEEEEeCcHHhCCcChhcCccccCCCCCCcEEEEEEecCCCCCeEEEEEEE
Confidence 4689999999885 8985 46787654 67999999998 7 79999998
No 33
>PRK05402 glycogen branching enzyme; Provisional
Probab=96.59 E-value=0.0051 Score=61.35 Aligned_cols=61 Identities=16% Similarity=-0.009 Sum_probs=43.6
Q ss_pred eEEE-EecCCCCeEEEEeccCCCccceeeeec--CCcEEEEEECCCc-cEEEEEEEcCe--eccCCCC
Q 028250 25 PTMI-TWSHDGCEVAVEGSWDNWKTRIALQRS--GKDFTIMKVLPSG-VYQYRFLVDGL--WKYAPDL 86 (211)
Q Consensus 25 pv~f-~w~~~g~~V~V~GsF~nW~~~~~L~k~--~~~f~~~~~Lp~G-~y~YKFiVDG~--w~~dp~~ 86 (211)
=++| +|.+.|++|+|+|+||+ ....+|.+. .+.|++.+.+..| .|+|...-||+ .+.||..
T Consensus 29 g~~f~vwaP~A~~V~vvgdfn~-~~~~~m~~~~~~G~w~~~ip~~~g~~YKy~i~~~g~~~~k~DPya 95 (726)
T PRK05402 29 GLVVRALLPGAEEVWVILPGGG-RKLAELERLHPRGLFAGVLPRKGPFDYRLRVTWGGGEQLIDDPYR 95 (726)
T ss_pred cEEEEEECCCCeEEEEEeecCC-CccccceEcCCCceEEEEecCCCCCCeEEEEEeCCceeEeccccc
Confidence 5677 59999999999999997 445789874 3569998887777 45554333785 4555433
No 34
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=96.45 E-value=0.011 Score=44.36 Aligned_cols=53 Identities=19% Similarity=0.350 Sum_probs=39.7
Q ss_pred eeEEEEec----CCCCeEEEEeccC---CCcc--ceeeeecC-CcEEEEEECCCc-cEEEEEEE
Q 028250 24 IPTMITWS----HDGCEVAVEGSWD---NWKT--RIALQRSG-KDFTIMKVLPSG-VYQYRFLV 76 (211)
Q Consensus 24 vpv~f~w~----~~g~~V~V~GsF~---nW~~--~~~L~k~~-~~f~~~~~Lp~G-~y~YKFiV 76 (211)
|+|.|.-. ..|+.|+|+|+.. +|+. .++|.... ..|++.+.||.| ..+|||++
T Consensus 1 v~v~f~~~~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~lp~~~~veyKyv~ 64 (97)
T cd05810 1 VSVTFSCNNGTTQLGQSVYVVGNVPQLGNWSPADAVKLDPTAYPTWSGSISLPASTNVEWKCLK 64 (97)
T ss_pred CeEEEEEeecccCCCCeEEEEEChHHhCCCChhhcccccCCCCCeEEEEEEcCCCCeEEEEEEE
Confidence 35555522 3588999999875 8996 45675543 459999999998 79999988
No 35
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=96.44 E-value=0.0086 Score=58.67 Aligned_cols=63 Identities=21% Similarity=0.400 Sum_probs=46.7
Q ss_pred eEEEE-ecCCCCeEEEEeccCCCcc-ceeeeec--CCcEEEEEE-CCCccEEEEEEEc---Ce--eccCCCCCc
Q 028250 25 PTMIT-WSHDGCEVAVEGSWDNWKT-RIALQRS--GKDFTIMKV-LPSGVYQYRFLVD---GL--WKYAPDLPS 88 (211)
Q Consensus 25 pv~f~-w~~~g~~V~V~GsF~nW~~-~~~L~k~--~~~f~~~~~-Lp~G~y~YKFiVD---G~--w~~dp~~p~ 88 (211)
-++|+ |.+.+++|.|.|+|++|.. ..+|.+. ++.|++.+. +.+|. .|+|.|+ |. .+.||..-.
T Consensus 29 g~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~~~~Gvw~~~i~~~~~g~-~Y~y~v~~~~g~~~~~~DPYA~~ 101 (613)
T TIGR01515 29 GTRFCVWAPNAREVRVAGDFNYWDGREHPMRRRNDNGIWELFIPGIGEGE-LYKYEIVTNNGEIRLKADPYAFY 101 (613)
T ss_pred cEEEEEECCCCCEEEEEEecCCCCCceecceEecCCCEEEEEeCCCCCCC-EEEEEEECCCCcEEEeCCCCEee
Confidence 46785 9999999999999999976 3578875 356998775 34565 5888884 54 467775543
No 36
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=96.24 E-value=0.017 Score=43.27 Aligned_cols=45 Identities=22% Similarity=0.475 Sum_probs=36.2
Q ss_pred CCCCeEEEEecc---CCCcc--ceeeeecC-CcEEEEEECCCc--cEEEEEEE
Q 028250 32 HDGCEVAVEGSW---DNWKT--RIALQRSG-KDFTIMKVLPSG--VYQYRFLV 76 (211)
Q Consensus 32 ~~g~~V~V~GsF---~nW~~--~~~L~k~~-~~f~~~~~Lp~G--~y~YKFiV 76 (211)
..|+.|+|+|+. .+|+. .++|.... ..|++.+.+|++ ..+|||++
T Consensus 12 ~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~~p~~~~~ieYKyvi 64 (99)
T cd05816 12 PKGQSVYVTGSSPELGNWDPQKALKLSDVGFPIWEADIDISKDSFPFEYKYII 64 (99)
T ss_pred CCCCEEEEEEChHHhCCCCccccccCCCCCCCcEEEEEEeCCCCccEEEEEEE
Confidence 368999999986 48995 45787643 469999999876 59999998
No 37
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=95.68 E-value=0.041 Score=53.79 Aligned_cols=81 Identities=12% Similarity=0.186 Sum_probs=51.9
Q ss_pred CCCccccCCCCCCCCCCCCceeEEEE-ecCCCCeEEEEeccCCCcc-----ceeeeec-CCcEEEEEE-CCCc-cEEEEE
Q 028250 4 PNLSWMQTSSGYEDMGDGVGIPTMIT-WSHDGCEVAVEGSWDNWKT-----RIALQRS-GKDFTIMKV-LPSG-VYQYRF 74 (211)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~vpv~f~-w~~~g~~V~V~GsF~nW~~-----~~~L~k~-~~~f~~~~~-Lp~G-~y~YKF 74 (211)
|++.|.++.. -+....... |.|+ |.+.+++|.|.+ |++|.. .++|.+. ++.|++.+. +..| .|.|++
T Consensus 2 ~~~~~~~~~~-lG~~~~~~~--~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~~~~gvw~~~i~~~~~g~~Y~y~v 77 (605)
T TIGR02104 2 FDDKFYYDGE-LGAVYTPEK--TVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKRGENGVWSAVLEGDLHGYFYTYQV 77 (605)
T ss_pred cccccCCCCC-CccEEECCe--eEEEEECCCCCEEEEEE-EcCCCCCccceEEecccCCCCEEEEEECCCCCCCEEEEEE
Confidence 5666666641 122222232 7885 999999999998 888853 4688865 456998886 4556 344444
Q ss_pred EEcCe--eccCCCCCc
Q 028250 75 LVDGL--WKYAPDLPS 88 (211)
Q Consensus 75 iVDG~--w~~dp~~p~ 88 (211)
..+|. ++.||....
T Consensus 78 ~~~~~~~~~~DPya~~ 93 (605)
T TIGR02104 78 CINGKWRETVDPYAKA 93 (605)
T ss_pred EcCCCeEEEcCCCcce
Confidence 44554 588887654
No 38
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol
Probab=95.66 E-value=0.06 Score=40.31 Aligned_cols=51 Identities=22% Similarity=0.388 Sum_probs=37.8
Q ss_pred EEEEec-CCCCeEEEEecc---CCCcc--ceeeeec--C--CcEEEEEECCCc-cEEEEEEE
Q 028250 26 TMITWS-HDGCEVAVEGSW---DNWKT--RIALQRS--G--KDFTIMKVLPSG-VYQYRFLV 76 (211)
Q Consensus 26 v~f~w~-~~g~~V~V~GsF---~nW~~--~~~L~k~--~--~~f~~~~~Lp~G-~y~YKFiV 76 (211)
..+.+. .-|+.++|+|+- -+|+. ..+|... + ..|++.+.++.+ ..+|||+|
T Consensus 4 f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~~~W~~~v~~~~~~~veYky~v 65 (101)
T cd05815 4 FKLPYYTQWGQSLLICGSDPLLGSWNVKKGLLLKPSHQGDVLVWSGSISVPPGFSSEYNYYV 65 (101)
T ss_pred EEEEEEccCCCEEEEEcChHHcCCcChHhcEeeeecCCCCCCEEEEEEEeCCCCcEEEEEEE
Confidence 334454 358999999977 47975 4678542 2 259999999987 69999999
No 39
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=95.62 E-value=0.053 Score=40.07 Aligned_cols=54 Identities=15% Similarity=0.394 Sum_probs=35.4
Q ss_pred eEEEEecC------CCCeEEEEeccCCCccc--eeeeecC-----CcEEEEEECCCccEEEEEEE-cC
Q 028250 25 PTMITWSH------DGCEVAVEGSWDNWKTR--IALQRSG-----KDFTIMKVLPSGVYQYRFLV-DG 78 (211)
Q Consensus 25 pv~f~w~~------~g~~V~V~GsF~nW~~~--~~L~k~~-----~~f~~~~~Lp~G~y~YKFiV-DG 78 (211)
+|+|.|.. ++.+|++.+.|++|+.. ..|.+.. +.|+++|.+|..-++..|+. ||
T Consensus 3 ~vtVyYn~~~~~l~g~~~v~~~~G~n~W~~~~~~~m~~~~~~~~~~~~~~tv~vP~~a~~~dfvF~dg 70 (87)
T PF03423_consen 3 TVTVYYNPSLTALSGAPNVHLHGGFNRWTHVPGFGMTKMCVPDEGGWWKATVDVPEDAYVMDFVFNDG 70 (87)
T ss_dssp EEEEEE---E-SSS-S-EEEEEETTS-B-SSS-EE-EEESS---TTEEEEEEE--TTTSEEEEEEE-S
T ss_pred EEEEEEEeCCCCCCCCCcEEEEecCCCCCcCCCCCcceeeeeecCCEEEEEEEEcCCceEEEEEEcCC
Confidence 45666632 47899999999999963 4677653 56999999999999999998 65
No 40
>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen
Probab=95.29 E-value=0.094 Score=40.85 Aligned_cols=48 Identities=21% Similarity=0.381 Sum_probs=37.3
Q ss_pred EecCCCCeEEEEecc---CCCcc--ceeeeec-------C-CcEEEEEECCCc----cEEEEEEE
Q 028250 29 TWSHDGCEVAVEGSW---DNWKT--RIALQRS-------G-KDFTIMKVLPSG----VYQYRFLV 76 (211)
Q Consensus 29 ~w~~~g~~V~V~GsF---~nW~~--~~~L~k~-------~-~~f~~~~~Lp~G----~y~YKFiV 76 (211)
+..+.|++|+|+|+- -+|.. .++|... . ..|++.++|+.| ..+|||+.
T Consensus 10 ~~~~~gq~v~IvGsipeLG~Wd~~~Av~Ls~~~yt~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~ 74 (112)
T cd05806 10 TFADRDTELLVLGSRPELGSWDPQRAVPMRPARKALSPQEPSLWLGEVELSEPGSEDTFWYKFLK 74 (112)
T ss_pred eecCCCCEEEEEECchhcCCCCcccccccccccccccCCCCCEEEEEEEcCCCCcCceEEEEEEE
Confidence 466789999999976 48996 3466643 2 359999999986 69999998
No 41
>PLN02960 alpha-amylase
Probab=92.93 E-value=0.12 Score=52.92 Aligned_cols=53 Identities=17% Similarity=0.391 Sum_probs=38.3
Q ss_pred eEEE-EecCCCCeEEEEeccCCCccc-eeee-----ecC-CcEEEEE--ECCCcc-------EEEEEEEc
Q 028250 25 PTMI-TWSHDGCEVAVEGSWDNWKTR-IALQ-----RSG-KDFTIMK--VLPSGV-------YQYRFLVD 77 (211)
Q Consensus 25 pv~f-~w~~~g~~V~V~GsF~nW~~~-~~L~-----k~~-~~f~~~~--~Lp~G~-------y~YKFiVD 77 (211)
-|.| .|.+|+..++|+|+||||.++ ..|. +++ +.|.+++ .|.+|. -+|.|..|
T Consensus 129 ~~~~~~wap~a~~~~~~gdfn~w~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (897)
T PLN02960 129 RVDFMEWAPGARYCSLVGDFNNWSPTENRAREGYFGHDDFGYWFIILEDKLREGEEPDELYFQEYNYVDD 198 (897)
T ss_pred CeEEEEEcCCceeEEEeecccCCCcccchhhcccccccccceEEEEechhhhcCCCcchhhhhhhccccc
Confidence 4555 699999999999999999984 3554 333 4588887 466662 36777765
No 42
>PF11806 DUF3327: Domain of unknown function (DUF3327); InterPro: IPR021764 This entry represents the N-terminal domain of enterochelin esterase. The activity of the enzyme has been characterised [, ]. Fes catalyses the hydrolysis of the 2,3-dihydroxy-N-benzoyl-L-serine trimer, enterochelin, forming 2,3-dihydroxybenzoylserine. It also catalyses hydrolysis of free enterobactin and ferric enterobactin. Upon hydrolysis of ferric enterobactin by Fes, released iron is probably reduced by a second enzyme. Enterochelin esterase represents a family of non-peptidase homologues belonging to the MEROPS peptidase family S9, clan SC. ; GO: 0005506 iron ion binding, 0008849 enterochelin esterase activity, 0006826 iron ion transport, 0005737 cytoplasm; PDB: 3MGA_B 3C87_B 3C8H_B 3C8D_A 2B20_A.
Probab=92.83 E-value=1 Score=35.30 Aligned_cols=80 Identities=23% Similarity=0.287 Sum_probs=52.3
Q ss_pred eEEEEec----CCCCeEEEEeccCCCccc-----eeeeecCC--cEEEEEECCCc-cEEEEEEEcCe-------------
Q 028250 25 PTMITWS----HDGCEVAVEGSWDNWKTR-----IALQRSGK--DFTIMKVLPSG-VYQYRFLVDGL------------- 79 (211)
Q Consensus 25 pv~f~w~----~~g~~V~V~GsF~nW~~~-----~~L~k~~~--~f~~~~~Lp~G-~y~YKFiVDG~------------- 79 (211)
-|+|-|+ +....+.|-|+.++...+ ..|++-++ .|+.++.|+.+ .-.|+|+.+-.
T Consensus 3 ~VTFlWRdp~~~~~~~~~V~~~~ngvtD~~~~~~~~l~Rl~gTDVW~~t~~lp~d~rgSY~~~p~~~~~~~~~r~~~r~~ 82 (122)
T PF11806_consen 3 LVTFLWRDPDEGASANVRVYGDINGVTDHHDPDPQSLQRLPGTDVWYWTYRLPADWRGSYSFIPDVPDARGAQREWWRAI 82 (122)
T ss_dssp EEEEEEE-TSTTT----EEEEEETTTTCGGGT---BEEE-TTSSEEEEEEEEETT-EEEEEEEEES-T-HHHHHHHHHHH
T ss_pred EEEEEEeCCCCCCCceeEEEEECCcccccccCChhhheeCCCCceEEEEEEECcccEEEEEEEecCcccchhHHHHHHHH
Confidence 5899999 456789999999999643 46888544 59999999988 78899997543
Q ss_pred ---eccCCCCCcee-CC---CCceeceEeecc
Q 028250 80 ---WKYAPDLPSTQ-DD---DGNVYNILDLQE 104 (211)
Q Consensus 80 ---w~~dp~~p~~~-d~---~G~~nNvi~V~~ 104 (211)
-+.||-+|... .. .|...++++..+
T Consensus 83 l~~~~~DPlNp~~~~~~~~~~g~~~S~l~Lp~ 114 (122)
T PF11806_consen 83 LAQAQADPLNPRPWPNGAQDRGNAASVLELPD 114 (122)
T ss_dssp GGG-B--TTSSSEEE-TT---SSEEEEEE-TT
T ss_pred HhccCCCCCCCCCCCCCccccccccCceeCCC
Confidence 35678888753 32 478888887754
No 43
>PLN02950 4-alpha-glucanotransferase
Probab=92.50 E-value=0.79 Score=47.29 Aligned_cols=56 Identities=18% Similarity=0.230 Sum_probs=41.5
Q ss_pred CCceeEEEEec--C-CCCeEEEEeccC---CCcc--ceeeeec----CCcEEEEEECCCc-cEEEEEEE
Q 028250 21 GVGIPTMITWS--H-DGCEVAVEGSWD---NWKT--RIALQRS----GKDFTIMKVLPSG-VYQYRFLV 76 (211)
Q Consensus 21 ~~~vpv~f~w~--~-~g~~V~V~GsF~---nW~~--~~~L~k~----~~~f~~~~~Lp~G-~y~YKFiV 76 (211)
...+.++|+-. . -|++|+|+|+-. +|.. ..+|... +..|++.+.|+.| ..+|||++
T Consensus 6 ~~~V~V~F~i~y~T~~GQ~l~VvGs~~~LG~Wd~~kA~~Ls~~~~~d~~~W~~~v~lp~~~~ieYKYv~ 74 (909)
T PLN02950 6 LKSVTLSFRIPYYTQWGQSLLVCGSEPLLGSWNVKKGLLLSPVHQGDELVWEGSVSVPEGFSCEYSYYV 74 (909)
T ss_pred CCcEEEEEEeEEecCCCCeEEEEecchhcCCCCcccceecccccCCCCCeEEEEEEecCCCeEEEEEEE
Confidence 44567777643 3 589999999884 7985 4678543 2359999999988 69999994
No 44
>PLN02950 4-alpha-glucanotransferase
Probab=92.34 E-value=0.87 Score=46.99 Aligned_cols=68 Identities=19% Similarity=0.356 Sum_probs=48.9
Q ss_pred CCCCceeEEEEec----CCCCeEEEEeccC---CCcc--ceeeeec-CCcEEEEEECCCc--cEEEEEEE---cCe--ec
Q 028250 19 GDGVGIPTMITWS----HDGCEVAVEGSWD---NWKT--RIALQRS-GKDFTIMKVLPSG--VYQYRFLV---DGL--WK 81 (211)
Q Consensus 19 ~~~~~vpv~f~w~----~~g~~V~V~GsF~---nW~~--~~~L~k~-~~~f~~~~~Lp~G--~y~YKFiV---DG~--w~ 81 (211)
+....+.|+|+-. ..|++|+|+|+-. +|+. ..+|... ...|.+.+.++.+ ..+|||++ +|. |-
T Consensus 148 ~~~~~v~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~~~~p~W~~~v~lp~~~~~~EYKyv~~~~~g~v~WE 227 (909)
T PLN02950 148 PAPDEIVVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNYTGDSIWEADCLVPKSDFPIKYKYALQTAEGLVSLE 227 (909)
T ss_pred CCCCceeEEEEEecCccCCCCeEEEEechhhcCCCCcccccccccCCCCcEEEEEEecCCCceEEEEEEEEcCCCceEEe
Confidence 4456788888854 2589999999874 8996 3457643 3569999999988 59999998 343 65
Q ss_pred cCCCC
Q 028250 82 YAPDL 86 (211)
Q Consensus 82 ~dp~~ 86 (211)
..++.
T Consensus 228 ~g~NR 232 (909)
T PLN02950 228 LGVNR 232 (909)
T ss_pred eCCCc
Confidence 44433
No 45
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=91.42 E-value=0.94 Score=47.68 Aligned_cols=63 Identities=17% Similarity=0.297 Sum_probs=45.0
Q ss_pred EEEE-ecCCCCeEEEEe-ccCCCcc---ceeeeecC-CcEEEEEE-CCCc-----cEEEEEEEcC----eeccCCCCCc
Q 028250 26 TMIT-WSHDGCEVAVEG-SWDNWKT---RIALQRSG-KDFTIMKV-LPSG-----VYQYRFLVDG----LWKYAPDLPS 88 (211)
Q Consensus 26 v~f~-w~~~g~~V~V~G-sF~nW~~---~~~L~k~~-~~f~~~~~-Lp~G-----~y~YKFiVDG----~w~~dp~~p~ 88 (211)
+.|+ |.+.+++|.|.+ ++++|.. .++|.+.. +.|++.+. +.+| -+.|+|.|++ ..+.||....
T Consensus 329 v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~~~GvW~v~v~~~~~G~~d~~G~~Y~Y~V~~~~~~~~~~DPYA~a 407 (1111)
T TIGR02102 329 VTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKGDRGVWEVQLTKENTGIDSLTGYYYHYEITRGGDKVLALDPYAKS 407 (1111)
T ss_pred EEEEEECCCCCEEEEEEEeCCCCCCceeeEecccCCCCEEEEEECCcccCcccCCCceEEEEEECCCceEEEeChhheE
Confidence 6775 999999999998 4556653 57898754 56998875 3332 3678888876 4677776554
No 46
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=91.30 E-value=0.63 Score=46.54 Aligned_cols=52 Identities=17% Similarity=0.214 Sum_probs=38.5
Q ss_pred EEEE-ecCCCCeEEEEeccCCCcc----ceeeeec-CCcEEEEEE-CCCccEEEEEEEcCe
Q 028250 26 TMIT-WSHDGCEVAVEGSWDNWKT----RIALQRS-GKDFTIMKV-LPSGVYQYRFLVDGL 79 (211)
Q Consensus 26 v~f~-w~~~g~~V~V~GsF~nW~~----~~~L~k~-~~~f~~~~~-Lp~G~y~YKFiVDG~ 79 (211)
|.|+ |.+.+++|.|. -|++|.. .++|.+. ++.|.+.+. +.+|. .|+|.|+|.
T Consensus 16 ~~F~vwap~A~~V~L~-l~~~~~~~~~~~~~m~~~~~gvW~~~v~~~~~g~-~Y~yrv~g~ 74 (688)
T TIGR02100 16 VNFALFSANAEKVELC-LFDAQGEKEEARLPLPERTDDIWHGYLPGAQPGQ-LYGYRVHGP 74 (688)
T ss_pred EEEEEECCCCCEEEEE-EEcCCCCceeeEEecccCCCCEEEEEECCCCCCC-EEEEEEeee
Confidence 6785 99999999986 4555542 4678764 457999885 66776 599999984
No 47
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=90.47 E-value=0.94 Score=33.05 Aligned_cols=62 Identities=24% Similarity=0.319 Sum_probs=42.8
Q ss_pred CCCCceeEEEEecCCC---CeEEEEecc-CCCccceeeeec-CCcEEEEEECCCccEEEEEEE-c-CeeccC
Q 028250 19 GDGVGIPTMITWSHDG---CEVAVEGSW-DNWKTRIALQRS-GKDFTIMKVLPSGVYQYRFLV-D-GLWKYA 83 (211)
Q Consensus 19 ~~~~~vpv~f~w~~~g---~~V~V~GsF-~nW~~~~~L~k~-~~~f~~~~~Lp~G~y~YKFiV-D-G~w~~d 83 (211)
+.+.-.-+.|.+.+|+ ..|.|.++= .+|. +|.|+ +..|.+.-.++.|-+.+|+.. | |+++..
T Consensus 9 S~~~~l~v~v~n~gG~gdi~~Vevk~~~s~~W~---~m~r~wGa~W~~~~~~~~~pls~Rvts~~~G~~vv~ 77 (82)
T PF01357_consen 9 SNPYYLAVLVKNVGGDGDIKAVEVKQSGSGNWI---PMKRSWGAVWQIDSNPPGGPLSFRVTSGDSGQTVVA 77 (82)
T ss_dssp -BTTEEEEEEEECCTTS-EEEEEEEETTSSS-E---E-EEECTTEEEEE-SS--SSEEEEEEETTTSEEEEE
T ss_pred CCCcEEEEEEEEcCCCccEEEEEEEeCCCCCce---EeecCcCceEEECCCCcCCCEEEEEEEcCCCeEEEE
Confidence 3466788889998764 478898544 4585 69887 668998767888899999988 7 887764
No 48
>PLN02316 synthase/transferase
Probab=90.36 E-value=0.57 Score=48.88 Aligned_cols=51 Identities=18% Similarity=0.433 Sum_probs=40.8
Q ss_pred CCeEEEEeccCCCccc---eeeeecC--C-cEEEEEECCCccEEEEEEE-cCeeccCC
Q 028250 34 GCEVAVEGSWDNWKTR---IALQRSG--K-DFTIMKVLPSGVYQYRFLV-DGLWKYAP 84 (211)
Q Consensus 34 g~~V~V~GsF~nW~~~---~~L~k~~--~-~f~~~~~Lp~G~y~YKFiV-DG~w~~dp 84 (211)
...|.|.|.||+|+-. ..|.|++ + -|++.+.+|++-|..-|+. ||.-.+|.
T Consensus 170 ~~~v~i~~gfN~W~~~~f~~~~~k~~~~g~ww~~~v~Vp~~A~~ldfVf~~g~~~yDN 227 (1036)
T PLN02316 170 EPDVLIMGAFNGWRWKSFTERLEKTELGGDWWSCKLHIPKEAYKMDFVFFNGQNVYDN 227 (1036)
T ss_pred CCceEEEeccccccccccceeccccccCCCeEEEEEecCccceEEEEEEeCCcccccc
Confidence 5789999999999963 3677763 3 4899999999999999998 77555543
No 49
>PRK03705 glycogen debranching enzyme; Provisional
Probab=89.23 E-value=1.3 Score=44.18 Aligned_cols=52 Identities=21% Similarity=0.250 Sum_probs=39.0
Q ss_pred EEEE-ecCCCCeEEEEeccCCCc--cceeeeec-CCcEEEEEE-CCCccEEEEEEEcCe
Q 028250 26 TMIT-WSHDGCEVAVEGSWDNWK--TRIALQRS-GKDFTIMKV-LPSGVYQYRFLVDGL 79 (211)
Q Consensus 26 v~f~-w~~~g~~V~V~GsF~nW~--~~~~L~k~-~~~f~~~~~-Lp~G~y~YKFiVDG~ 79 (211)
|.|+ |.+.+++|.|.. |+++. ..++|.+. ++.|++.+. +.+|. .|+|.|+|.
T Consensus 21 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~~gvW~~~v~~~~~G~-~Y~yrv~g~ 77 (658)
T PRK03705 21 VNFTLFSAHAERVELCV-FDENGQEQRYDLPARSGDIWHGYLPGARPGL-RYGYRVHGP 77 (658)
T ss_pred EEEEEECCCCCEEEEEE-EcCCCCeeeEeeeeccCCEEEEEECCCCCCC-EEEEEEccc
Confidence 6784 999999999997 76653 35678764 467998875 55665 599999984
No 50
>PLN02316 synthase/transferase
Probab=89.06 E-value=1.2 Score=46.62 Aligned_cols=56 Identities=18% Similarity=0.381 Sum_probs=44.2
Q ss_pred CCceeEEEEecCC------CCeEEEEeccCCCccc------eeeeecCC--cEEEEEECCCccEEEEEEE
Q 028250 21 GVGIPTMITWSHD------GCEVAVEGSWDNWKTR------IALQRSGK--DFTIMKVLPSGVYQYRFLV 76 (211)
Q Consensus 21 ~~~vpv~f~w~~~------g~~V~V~GsF~nW~~~------~~L~k~~~--~f~~~~~Lp~G~y~YKFiV 76 (211)
..+-+|++-|+.. ..+|++.|+||+|... ..|+++++ -+.+++.+|...|-..|+.
T Consensus 488 ~aG~~v~v~Yn~~~t~l~~~~ev~~~g~~NrWth~~~~~~~~~m~~~~~g~~~~a~v~vP~da~~mdfvF 557 (1036)
T PLN02316 488 QAGTTVTVLYNPANTVLNGKPEVWFRGSFNRWTHRLGPLPPQKMVPADNGSHLKATVKVPLDAYMMDFVF 557 (1036)
T ss_pred CCCCEEEEEECCCCCcCCCCceEEEEccccCcCCCCCCCCceeeeecCCCceEEEEEEccccceEEEEEE
Confidence 3456888888854 5799999999999964 24666543 3688999999999999987
No 51
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=88.93 E-value=2.6 Score=39.48 Aligned_cols=86 Identities=16% Similarity=0.132 Sum_probs=57.3
Q ss_pred CCceeEEEEecCC-C-------CeEEEEe--ccC--CCccceeeeecC--CcEEEEEECCCc-cEEEEEEEc---C----
Q 028250 21 GVGIPTMITWSHD-G-------CEVAVEG--SWD--NWKTRIALQRSG--KDFTIMKVLPSG-VYQYRFLVD---G---- 78 (211)
Q Consensus 21 ~~~vpv~f~w~~~-g-------~~V~V~G--sF~--nW~~~~~L~k~~--~~f~~~~~Lp~G-~y~YKFiVD---G---- 78 (211)
+...-|+|-|++. | +.|+|.+ .-| .+.....|++-+ +.|+.++.||.. .-.|+|+++ +
T Consensus 36 ~~~~~vTFlwr~~~~~~~~~~~~~v~~~~n~~tdh~~~~~~~~l~rl~~tDvW~~~~~~p~~~r~sY~~~~~~~~~~~~~ 115 (411)
T PRK10439 36 DGMVRVTFWWRDPQGDEEHSTIRRVWIYINGVTDHHQNSQPQSLQRIAGTDVWQWSTELSANWRGSYCFIPTERDDIFSA 115 (411)
T ss_pred CCcEEEEEEeeCCCCCcccccceeEEEeCCCCCCcCccCCcchhhccCCCceEEEEEEECcccEEEEEEEeccccccccc
Confidence 4568999999963 3 2588743 222 133334688854 459999999998 789999983 1
Q ss_pred ---------------------eeccCCCCCcee-CCCCceeceEeeccCC
Q 028250 79 ---------------------LWKYAPDLPSTQ-DDDGNVYNILDLQEYV 106 (211)
Q Consensus 79 ---------------------~w~~dp~~p~~~-d~~G~~nNvi~V~~~~ 106 (211)
.-+.||.+|... +..|+-.++|++.+..
T Consensus 116 ~~~~~~~~~~~~r~~~~~l~~~~~~DP~N~~~~~~~~~~~~S~l~lp~a~ 165 (411)
T PRK10439 116 FAPAPSPDRLELREGWRKLLPQAIADPLNPQSWRGGRGHAVSALEMPQAP 165 (411)
T ss_pred cccccchhHHHHHHHHHHhhccccCCCCCCCCCCCCCccccccccCCCCC
Confidence 114788887753 4455556888887643
No 52
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=88.76 E-value=2.9 Score=31.10 Aligned_cols=55 Identities=13% Similarity=0.149 Sum_probs=37.0
Q ss_pred CceeEEEEec-CCCCeEEEEeccCC--Cc-cceeeeecCC-----cEEEEEECCCccEEEEEEE
Q 028250 22 VGIPTMITWS-HDGCEVAVEGSWDN--WK-TRIALQRSGK-----DFTIMKVLPSGVYQYRFLV 76 (211)
Q Consensus 22 ~~vpv~f~w~-~~g~~V~V~GsF~n--W~-~~~~L~k~~~-----~f~~~~~Lp~G~y~YKFiV 76 (211)
..+.++|+=. ...++|.|.-.-+. +. ..++|.+.+. .|.+++.++.|.+.|.|.|
T Consensus 16 ~~v~irlr~~~~~v~~v~l~~~~~~~~~~~~~~~M~~~~~~~~~~~~~~~i~~~~~~~~Y~F~l 79 (116)
T cd02857 16 DTLHIRLRTKKGDVAKVYLRYGDPYDKGEEEEVPMRKDGSDELFDYWEATLPPPTGRLRYYFEL 79 (116)
T ss_pred CEEEEEEEecCCCccEEEEEEECCCCCCCceEEEEEEeeeCCceeEEEEEEecCCcEEEEEEEE
Confidence 4455555533 45678888654432 22 2578987542 3888888888999999999
No 53
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=87.00 E-value=1.9 Score=44.59 Aligned_cols=64 Identities=19% Similarity=0.179 Sum_probs=43.8
Q ss_pred eEEEE-ecCCCCeEEEEeccCCCc--cceeeeec--CCcEEEEEE-CCCccEEEEEEEc------Ce----eccCCCCCc
Q 028250 25 PTMIT-WSHDGCEVAVEGSWDNWK--TRIALQRS--GKDFTIMKV-LPSGVYQYRFLVD------GL----WKYAPDLPS 88 (211)
Q Consensus 25 pv~f~-w~~~g~~V~V~GsF~nW~--~~~~L~k~--~~~f~~~~~-Lp~G~y~YKFiVD------G~----w~~dp~~p~ 88 (211)
-|+|+ |.+.+++|.|.+..++|. ..++|.+. .+.|++.+. ...|. .|+|.|+ |+ .+.||..-.
T Consensus 136 gv~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~~~~GVWsv~v~g~~~G~-~Y~Y~V~v~~p~~G~v~~~~v~DPYA~a 214 (898)
T TIGR02103 136 GVTFRLWAPTAQQVKLHIYSASKKVETTLPMTRDSTSGVWSAEGGSSWKGA-YYRYEVTVYHPSTGKVETYLVTDPYSVS 214 (898)
T ss_pred cEEEEEECCCCCEEEEEEEcCCCCccceEeCccCCCCCEEEEEECcCCCCC-EeEEEEEEecCCCCeECCeEEeCcCcce
Confidence 46775 999999999997665553 24689875 467999875 44564 3666665 53 478876654
Q ss_pred e
Q 028250 89 T 89 (211)
Q Consensus 89 ~ 89 (211)
.
T Consensus 215 l 215 (898)
T TIGR02103 215 L 215 (898)
T ss_pred E
Confidence 4
No 54
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=82.94 E-value=5.9 Score=30.31 Aligned_cols=57 Identities=14% Similarity=0.189 Sum_probs=37.8
Q ss_pred CCceeEEEEec-CCCCeEEEE-eccCCC----c-cceeeeecC--C---cEEEEEECCCccEEEEEEEc
Q 028250 21 GVGIPTMITWS-HDGCEVAVE-GSWDNW----K-TRIALQRSG--K---DFTIMKVLPSGVYQYRFLVD 77 (211)
Q Consensus 21 ~~~vpv~f~w~-~~g~~V~V~-GsF~nW----~-~~~~L~k~~--~---~f~~~~~Lp~G~y~YKFiVD 77 (211)
...+.++|+=. +..++|.|. |+-.+| . ...+|++.. + .|.+++.++....+|.|.|-
T Consensus 20 ~~~l~IRLRt~k~Dv~~V~l~~~d~~~~~~~~~~~~~~M~k~~~~~~fDyye~~l~~~~~r~~Y~F~l~ 88 (120)
T PF02903_consen 20 GDTLHIRLRTAKNDVEKVFLVYGDPYEEEGKWTYKSVEMEKIASDELFDYYEATLKLPEKRLRYYFELE 88 (120)
T ss_dssp TTEEEEEEEEETTT-SEEEEEEEETTSETTCECEEEEEEEEEEEESSEEEEEEEEE-TTSEEEEEEEEE
T ss_pred CCEEEEEEEecCCCCCEEEEEECCCccccccceEEEEEeEEEEeCCCeEEEEEEEECCCCeEEEEEEEE
Confidence 44566666654 567899885 666666 2 246788742 2 38999999999888888873
No 55
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=78.96 E-value=4.8 Score=42.95 Aligned_cols=54 Identities=24% Similarity=0.337 Sum_probs=40.9
Q ss_pred eEEEE-ecCCCCeEEEEeccCCCcc----ceeee-ecCCcEEEEEE-CCCccEEEEEEEcCee
Q 028250 25 PTMIT-WSHDGCEVAVEGSWDNWKT----RIALQ-RSGKDFTIMKV-LPSGVYQYRFLVDGLW 80 (211)
Q Consensus 25 pv~f~-w~~~g~~V~V~GsF~nW~~----~~~L~-k~~~~f~~~~~-Lp~G~y~YKFiVDG~w 80 (211)
-|.|+ |...+++|.|. -|+.|.. +++|. +.++.|++.+. +.+|. .|+|.|+|.+
T Consensus 24 gv~F~v~ap~A~~V~L~-lf~~~~~~~~~~~~l~~~~g~vW~~~i~~~~~g~-~Ygyrv~g~~ 84 (1221)
T PRK14510 24 GVNLALFSGAAERVEFC-LFDLWGVREEARIKLPGRTGDVWHGFIVGVGPGA-RYGNRQEGPG 84 (1221)
T ss_pred eEEEEEECCCCCEEEEE-EEECCCCCeeEEEECCCCcCCEEEEEEccCCCCc-EEEEEeccCC
Confidence 37784 89999999997 8888864 35664 45667888764 77887 6999999854
No 56
>PLN03244 alpha-amylase; Provisional
Probab=77.71 E-value=2.2 Score=43.60 Aligned_cols=52 Identities=19% Similarity=0.392 Sum_probs=36.3
Q ss_pred EEE-EecCCCCeEEEEeccCCCccceeee------ecC-CcEEEEE--ECCCcc-------EEEEEEEc
Q 028250 26 TMI-TWSHDGCEVAVEGSWDNWKTRIALQ------RSG-KDFTIMK--VLPSGV-------YQYRFLVD 77 (211)
Q Consensus 26 v~f-~w~~~g~~V~V~GsF~nW~~~~~L~------k~~-~~f~~~~--~Lp~G~-------y~YKFiVD 77 (211)
+.| .|.+|+.--+|.|+||||.+..-.. +++ +.|.+++ .|..|. -+|.|.-|
T Consensus 133 ~~~~ewapga~~~~~~gdfn~w~~~~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (872)
T PLN03244 133 VDFMDWAPGARYCAIIGDFNGWSPTENAAREGHFGHDDYGYWFIILEDKLREGEEPDELYFQQYNYVDD 201 (872)
T ss_pred ceeEeecCCcceeeeeccccCCCccccccccccccccccceEEEEechhhhcCCCchhhhHhhhccccc
Confidence 444 6999999999999999999853333 333 4588877 476662 35666544
No 57
>PLN02877 alpha-amylase/limit dextrinase
Probab=76.32 E-value=7.3 Score=40.65 Aligned_cols=51 Identities=16% Similarity=0.247 Sum_probs=34.8
Q ss_pred eEEEE-ecCCCCeEEEEeccCCCc---c--ceeeeecCCcEEEEEEC-CCccEEEEEEEc
Q 028250 25 PTMIT-WSHDGCEVAVEGSWDNWK---T--RIALQRSGKDFTIMKVL-PSGVYQYRFLVD 77 (211)
Q Consensus 25 pv~f~-w~~~g~~V~V~GsF~nW~---~--~~~L~k~~~~f~~~~~L-p~G~y~YKFiVD 77 (211)
-+.|+ |.+.+++|.|.- |++|. . .++|.+.++.|++.+.- ..| ..|+|.|+
T Consensus 223 g~~F~VWAPtA~~V~L~l-yd~~~~~~~~~~~~m~~~~GVWsv~v~~~~~G-~~Y~Y~V~ 280 (970)
T PLN02877 223 AVSLYLWAPTAQAVSLCL-YDDPRGKEPLEIVQLKESNGVWSVEGPKSWEG-CYYVYEVS 280 (970)
T ss_pred CEEEEEECCCCCEEEEEE-ecCCCCccceEEecccCCCCEEEEEeccCCCC-CeeEEEEe
Confidence 57774 999999999985 55553 2 34677556779988763 345 34666665
No 58
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=73.20 E-value=11 Score=30.11 Aligned_cols=49 Identities=20% Similarity=0.180 Sum_probs=34.1
Q ss_pred eeEEEEecCC-CCeEEEEeccCCCccceeee-ecCCcEEEEEECCCccEEEEE
Q 028250 24 IPTMITWSHD-GCEVAVEGSWDNWKTRIALQ-RSGKDFTIMKVLPSGVYQYRF 74 (211)
Q Consensus 24 vpv~f~w~~~-g~~V~V~GsF~nW~~~~~L~-k~~~~f~~~~~Lp~G~y~YKF 74 (211)
=.|+|.|... +..|...++..-|.. ..+. +-+..|+.+++- +|.|.|+=
T Consensus 62 DTVtw~~~d~~~Hnv~~~~~~~~~g~-~~~~~~~~~s~~~Tfe~-~G~Y~Y~C 112 (128)
T COG3794 62 DTVTWVNTDSVGHNVTAVGGMDPEGS-GTLKAGINESFTHTFET-PGEYTYYC 112 (128)
T ss_pred CEEEEEECCCCCceEEEeCCCCcccc-cccccCCCcceEEEecc-cceEEEEe
Confidence 3678888876 899999998855543 2232 223567777765 79999963
No 59
>PF11896 DUF3416: Domain of unknown function (DUF3416); InterPro: IPR021828 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is about 190 amino acids in length. This domain is found associated with PF00128 from PFAM. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3ZT7_A 3ZST_B 3ZT6_A 3ZSS_D 3ZT5_B.
Probab=64.65 E-value=17 Score=30.63 Aligned_cols=39 Identities=23% Similarity=0.597 Sum_probs=23.0
Q ss_pred CCCccceeeeecCCc-EEEEEECC-CccEEEEEE--Ec--CeeccC
Q 028250 44 DNWKTRIALQRSGKD-FTIMKVLP-SGVYQYRFL--VD--GLWKYA 83 (211)
Q Consensus 44 ~nW~~~~~L~k~~~~-f~~~~~Lp-~G~y~YKFi--VD--G~w~~d 83 (211)
..|+. .+|...+++ |...+.+. +|.|+|+.. +| +.|+++
T Consensus 55 ~~w~~-vpM~~~gnDrW~a~f~~~~~G~~~f~VeAW~D~faTW~~~ 99 (187)
T PF11896_consen 55 REWQE-VPMTPLGNDRWEASFTPDRPGRYEFRVEAWVDHFATWRHD 99 (187)
T ss_dssp -B-----B-EESTS-EEEEEEE--SSEEEEEEEEEEE-HHHHHHHH
T ss_pred Cccee-eccccCCCCEEEEEEECCCceeEEEEEEEEeccHHHHHHh
Confidence 34885 899988876 99887765 799999986 56 457765
No 60
>PF03370 CBM_21: Putative phosphatase regulatory subunit; InterPro: IPR005036 This family consists of several eukaryotic proteins that are thought to be involved in the regulation of glycogen metabolism. For instance, the mouse PTG protein O08541 from SWISSPROT has been shown to interact with glycogen synthase, phosphorylase kinase, phosphorylase a: these three enzymes have key roles in the regulation of glycogen metabolism. PTG also binds the catalytic subunit of protein phosphatase 1 (PP1C) and localizes it to glycogen. Subsets of similar interactions have been observed with several other members of this family, such as the yeast PIG1, PIG2, GAC1 and GIP2 proteins. While the precise function of these proteins is not known, they may serve a scaffold function, bringing together the key enzymes in glycogen metabolism. This entry is a carbohydrate binding domain.; GO: 0005515 protein binding; PDB: 2V8M_D 2V8L_A 2VQ4_A 2EEF_A 2DJM_A.
Probab=63.80 E-value=24 Score=26.94 Aligned_cols=58 Identities=24% Similarity=0.359 Sum_probs=35.8
Q ss_pred CceeEEEEecC--CCCeEEEEeccCCCccceeee----e-----cC----CcEEEEEECCCc--------cEEEEEEEcC
Q 028250 22 VGIPTMITWSH--DGCEVAVEGSWDNWKTRIALQ----R-----SG----KDFTIMKVLPSG--------VYQYRFLVDG 78 (211)
Q Consensus 22 ~~vpv~f~w~~--~g~~V~V~GsF~nW~~~~~L~----k-----~~----~~f~~~~~Lp~G--------~y~YKFiVDG 78 (211)
..+..++.=.. -.++|.|-=|||+|+....+. . +. +.|...+.|++. .+--+|.++|
T Consensus 19 ~~L~G~V~V~NlayeK~V~VryT~D~W~t~~d~~a~y~~~~~~~~~~~~~d~F~F~i~l~~~~~~~~~~lef~I~Y~~~g 98 (113)
T PF03370_consen 19 QSLSGTVRVRNLAYEKEVTVRYTFDNWRTFSDVPASYVSSCPGPSPSGNYDRFSFSIPLPDLLPPEGGRLEFCIRYEVNG 98 (113)
T ss_dssp SEEEEEEEEE-SSSSEEEEEEEETSCTSSCCEEEEEEEE---EESTTSSEEEEEEEEE-SSE--T-TS-SEEEEEEEETT
T ss_pred CEEEEEEEEEcCCCCeEEEEEEeeCCCCceeEEeeEEeccccCCCCCCcccEEEEEEECCcccccCCceEEEEEEEEeCC
Confidence 34555555443 357899999999998643321 1 11 237777887643 4666888888
Q ss_pred e
Q 028250 79 L 79 (211)
Q Consensus 79 ~ 79 (211)
.
T Consensus 99 ~ 99 (113)
T PF03370_consen 99 Q 99 (113)
T ss_dssp E
T ss_pred C
Confidence 6
No 61
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=58.81 E-value=7.3 Score=39.39 Aligned_cols=38 Identities=16% Similarity=0.343 Sum_probs=27.8
Q ss_pred EEE-EecCCCCeEEEEeccCCCccceeee---ecC-CcEEEEEE
Q 028250 26 TMI-TWSHDGCEVAVEGSWDNWKTRIALQ---RSG-KDFTIMKV 64 (211)
Q Consensus 26 v~f-~w~~~g~~V~V~GsF~nW~~~~~L~---k~~-~~f~~~~~ 64 (211)
+.+ .|.++++.|.++|+||+|.. ..+. |.. ..|++.+.
T Consensus 115 v~~~ewaP~a~~~s~~gd~n~W~~-~~~~~~~k~~~g~w~i~l~ 157 (757)
T KOG0470|consen 115 VDFTEWAPLAEAVSLIGDFNNWNP-SSNELKPKDDLGVWEIDLP 157 (757)
T ss_pred eeeeeecccccccccccccCCCCC-cccccCcccccceeEEecC
Confidence 666 49999999999999999997 3333 332 34776654
No 62
>PRK10785 maltodextrin glucosidase; Provisional
Probab=53.31 E-value=69 Score=31.52 Aligned_cols=60 Identities=12% Similarity=0.072 Sum_probs=40.6
Q ss_pred CCCceeEEEEecC-C-CCeEEEEeccCCCccceeeeecCC-----cEEEEEECC--CccEEEEEEE--cCe
Q 028250 20 DGVGIPTMITWSH-D-GCEVAVEGSWDNWKTRIALQRSGK-----DFTIMKVLP--SGVYQYRFLV--DGL 79 (211)
Q Consensus 20 ~~~~vpv~f~w~~-~-g~~V~V~GsF~nW~~~~~L~k~~~-----~f~~~~~Lp--~G~y~YKFiV--DG~ 79 (211)
....+.++++=.. . -++|.|.-.+++-....+|.+.+. .|.+++.++ .+.+.|.|.+ +|+
T Consensus 17 ~~~~~~~~lr~~~~~~~~~v~l~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~Y~F~l~~~~~ 87 (598)
T PRK10785 17 SKDQLLITLWLTGEDPPQRVMLRCEPDNEEYLLPMEKQRSQPQVTAWRASLPLNSGQPRRRYSFKLLWHDR 87 (598)
T ss_pred CCCEEEEEEEEcCCCceEEEEEEEEcCCCEEEEEeEEeecCCCceEEEEEEEcCCCCceEEEEEEEEeCCE
Confidence 4456677775443 2 568888766666555678887532 388888885 6788898888 554
No 63
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=49.97 E-value=33 Score=24.48 Aligned_cols=48 Identities=13% Similarity=0.219 Sum_probs=27.2
Q ss_pred eEEEEecCC-CCeEE-EEeccCCCccceeeeecCCcEEEEEECCCccEEEE
Q 028250 25 PTMITWSHD-GCEVA-VEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYR 73 (211)
Q Consensus 25 pv~f~w~~~-g~~V~-V~GsF~nW~~~~~L~k~~~~f~~~~~Lp~G~y~YK 73 (211)
.|+|++..+ +..|. ..|.+.++...-.+...+..|+.++. .||.|.|.
T Consensus 20 tVt~~N~d~~~Hnv~~~~g~~~~~~~~~~~~~~g~~~~~tf~-~~G~y~y~ 69 (83)
T TIGR02657 20 TVTWINREAMPHNVHFVAGVLGEAALKGPMMKKEQAYSLTFT-EAGTYDYH 69 (83)
T ss_pred EEEEEECCCCCccEEecCCCCccccccccccCCCCEEEEECC-CCEEEEEE
Confidence 456666643 56664 44555443322234445566777654 57888875
No 64
>KOG0045 consensus Cytosolic Ca2+-dependent cysteine protease (calpain), large subunit (EF-Hand protein superfamily) [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.93 E-value=15 Score=36.48 Aligned_cols=26 Identities=27% Similarity=0.776 Sum_probs=21.0
Q ss_pred CCccEEEEEEEcCeec---cCCCCCceeC
Q 028250 66 PSGVYQYRFLVDGLWK---YAPDLPSTQD 91 (211)
Q Consensus 66 p~G~y~YKFiVDG~w~---~dp~~p~~~d 91 (211)
..|.|+|||.++|+|+ .|+.+|+..+
T Consensus 115 yaGif~f~~w~~G~W~~VvIDD~LP~~~~ 143 (612)
T KOG0045|consen 115 YAGIFHFRFWQNGEWVEVVIDDRLPTSNG 143 (612)
T ss_pred cceEEEEEEEeCCeEEEEEeeeecceEcC
Confidence 3699999999999985 5777788554
No 65
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=46.16 E-value=61 Score=25.15 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=24.8
Q ss_pred ceeEEEEecCCCCeEEEE-eccCCCccceeeeecCCcEEEEEECCCccEEEE
Q 028250 23 GIPTMITWSHDGCEVAVE-GSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYR 73 (211)
Q Consensus 23 ~vpv~f~w~~~g~~V~V~-GsF~nW~~~~~L~k~~~~f~~~~~Lp~G~y~YK 73 (211)
+=.|+|+|..++..|... |..- +....-....+..|+.++. .+|.|.|.
T Consensus 22 GdTV~f~n~d~~Hnv~~~~~~~p-~g~~~~~s~~g~~~~~tF~-~~G~Y~Y~ 71 (116)
T TIGR02375 22 GDTVTFVPTDKGHNVETIKGMIP-EGAEAFKSKINEEYTVTVT-EEGVYGVK 71 (116)
T ss_pred CCEEEEEECCCCeeEEEccCCCc-CCcccccCCCCCEEEEEeC-CCEEEEEE
Confidence 446788888777666542 2111 1110001122445666665 46888775
No 66
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=34.78 E-value=1.1e+02 Score=20.59 Aligned_cols=42 Identities=29% Similarity=0.374 Sum_probs=27.5
Q ss_pred EEEecCCCCeEEEEeccCCCccceeeeecCCcEEEEEECCCccEEEEEEEcCe
Q 028250 27 MITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGL 79 (211)
Q Consensus 27 ~f~w~~~g~~V~V~GsF~nW~~~~~L~k~~~~f~~~~~Lp~G~y~YKFiVDG~ 79 (211)
.|+=...|-+|+|-|.+-+ ..|+ ....|++|.|.+++.-+|-
T Consensus 5 ~V~s~p~gA~V~vdg~~~G---~tp~--------~~~~l~~G~~~v~v~~~Gy 46 (71)
T PF08308_consen 5 RVTSNPSGAEVYVDGKYIG---TTPL--------TLKDLPPGEHTVTVEKPGY 46 (71)
T ss_pred EEEEECCCCEEEECCEEec---cCcc--------eeeecCCccEEEEEEECCC
Confidence 3444556778999887655 2232 1223888888888888883
No 67
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=34.29 E-value=85 Score=23.06 Aligned_cols=19 Identities=26% Similarity=0.476 Sum_probs=10.4
Q ss_pred cCCcEEEEE-ECCCccEEEE
Q 028250 55 SGKDFTIMK-VLPSGVYQYR 73 (211)
Q Consensus 55 ~~~~f~~~~-~Lp~G~y~YK 73 (211)
.++..++++ .+.+|+|+|.
T Consensus 72 ~g~~~~~~f~~~~~G~y~~~ 91 (104)
T PF13473_consen 72 PGETATVTFTPLKPGEYEFY 91 (104)
T ss_dssp TT-EEEEEEEE-S-EEEEEB
T ss_pred CCCEEEEEEcCCCCEEEEEE
Confidence 344566554 7889998873
No 68
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=33.97 E-value=1.4e+02 Score=23.06 Aligned_cols=18 Identities=22% Similarity=0.473 Sum_probs=11.9
Q ss_pred cCCcEEEEEECCCccEEEE
Q 028250 55 SGKDFTIMKVLPSGVYQYR 73 (211)
Q Consensus 55 ~~~~f~~~~~Lp~G~y~YK 73 (211)
.+..|+.++. .+|.|.|.
T Consensus 82 ~G~t~s~Tf~-~~G~Y~Y~ 99 (115)
T TIGR03102 82 EGTTYEHTFE-EPGIYLYV 99 (115)
T ss_pred CCCEEEEEec-CCcEEEEE
Confidence 3456777764 56888775
No 69
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=32.44 E-value=49 Score=24.72 Aligned_cols=20 Identities=20% Similarity=0.351 Sum_probs=16.1
Q ss_pred EEEEECCCccEEEEEEEcCe
Q 028250 60 TIMKVLPSGVYQYRFLVDGL 79 (211)
Q Consensus 60 ~~~~~Lp~G~y~YKFiVDG~ 79 (211)
+..+.|+.|.|..+|...+.
T Consensus 92 ~~~v~l~~G~h~i~l~~~~~ 111 (125)
T PF03422_consen 92 SVSVKLPAGKHTIYLVFNGG 111 (125)
T ss_dssp EEEEEEESEEEEEEEEESSS
T ss_pred EEEEeeCCCeeEEEEEEECC
Confidence 34578999999999998763
No 70
>TIGR03009 plancto_dom_2 Planctomycetes uncharacterized domain TIGR03009. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to four proteins per genome. The function is unknown.
Probab=32.33 E-value=64 Score=27.78 Aligned_cols=17 Identities=12% Similarity=0.378 Sum_probs=13.0
Q ss_pred EEEcCe--eccCCCCCcee
Q 028250 74 FLVDGL--WKYAPDLPSTQ 90 (211)
Q Consensus 74 FiVDG~--w~~dp~~p~~~ 90 (211)
.|-||+ |.+||+...++
T Consensus 67 iVsDGk~lW~YDpdleQVT 85 (210)
T TIGR03009 67 WICNGTAVYAYNGLAKTVT 85 (210)
T ss_pred EEECCCEEEEECCChhhEE
Confidence 344997 99999998754
No 71
>PF14347 DUF4399: Domain of unknown function (DUF4399)
Probab=31.78 E-value=77 Score=23.42 Aligned_cols=30 Identities=20% Similarity=0.234 Sum_probs=20.7
Q ss_pred cEEEEEECCCccEEEEEEEcCeeccCCCCCc
Q 028250 58 DFTIMKVLPSGVYQYRFLVDGLWKYAPDLPS 88 (211)
Q Consensus 58 ~f~~~~~Lp~G~y~YKFiVDG~w~~dp~~p~ 88 (211)
.=++.+.|+||+|....+. |.+.+-+..|.
T Consensus 52 qte~~I~L~PG~htLtl~~-~d~~h~~~~~~ 81 (87)
T PF14347_consen 52 QTELNIELPPGKHTLTLQL-GDGDHVPHDPP 81 (87)
T ss_pred EEEEEEEeCCCCEEEEEEe-CCCCcccCCCc
Confidence 3456789999999999887 44444444443
No 72
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=30.66 E-value=29 Score=26.49 Aligned_cols=20 Identities=20% Similarity=0.582 Sum_probs=15.5
Q ss_pred CCCccEEEEEEEcCeeccCCC
Q 028250 65 LPSGVYQYRFLVDGLWKYAPD 85 (211)
Q Consensus 65 Lp~G~y~YKFiVDG~w~~dp~ 85 (211)
=|.|-|+|.|. ||.|+..-+
T Consensus 64 Sp~G~~hf~~~-~~~W~~~r~ 83 (105)
T cd00503 64 SKVGGYHFDYK-NGKWICTRS 83 (105)
T ss_pred cCCCCccceec-CCEEEECCC
Confidence 34588999995 999998743
No 73
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=30.45 E-value=53 Score=24.99 Aligned_cols=26 Identities=27% Similarity=0.348 Sum_probs=19.1
Q ss_pred cEEEEEEEcCeeccCCCCCceeCCCC
Q 028250 69 VYQYRFLVDGLWKYAPDLPSTQDDDG 94 (211)
Q Consensus 69 ~y~YKFiVDG~w~~dp~~p~~~d~~G 94 (211)
.-.+||++||+.+--..-|-.-|-.|
T Consensus 62 m~slRfL~dG~rI~~dqTP~dldmEd 87 (103)
T COG5227 62 MSSLRFLFDGKRIDLDQTPGDLDMED 87 (103)
T ss_pred cceeEEEEcceecCCCCChhhcCCcc
Confidence 57899999999877666666555444
No 74
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=30.44 E-value=34 Score=25.86 Aligned_cols=18 Identities=44% Similarity=0.942 Sum_probs=14.7
Q ss_pred CccEEEEEEEcCeeccCCC
Q 028250 67 SGVYQYRFLVDGLWKYAPD 85 (211)
Q Consensus 67 ~G~y~YKFiVDG~w~~dp~ 85 (211)
.|-|+|.| ++|.|+..-+
T Consensus 66 sGp~hfd~-~~~~Wi~~r~ 83 (97)
T TIGR03422 66 SGPKRYDY-VNGEWIYLRD 83 (97)
T ss_pred CCCcceee-cCCEEEECCC
Confidence 68899999 4899998643
No 75
>PLN00115 pollen allergen group 3; Provisional
Probab=30.41 E-value=1.7e+02 Score=22.97 Aligned_cols=51 Identities=24% Similarity=0.403 Sum_probs=34.5
Q ss_pred cCCCCeEEEEecc-CCCccceeeeec-CCcEEEEEE-CCCccEEEEEEEc-CeeccC
Q 028250 31 SHDGCEVAVEGSW-DNWKTRIALQRS-GKDFTIMKV-LPSGVYQYRFLVD-GLWKYA 83 (211)
Q Consensus 31 ~~~g~~V~V~GsF-~nW~~~~~L~k~-~~~f~~~~~-Lp~G~y~YKFiVD-G~w~~d 83 (211)
..+-..|.|.++= .+|.. +|.++ |..|.+.-. .+.|-+.+||... |.+.+.
T Consensus 44 ~~dI~~V~Ik~~g~~~W~~--~M~rswGavW~~~s~~pl~GPlS~R~t~~~G~~~va 98 (118)
T PLN00115 44 NVAISEVEIKEKGAKDWVD--DLKESSTNTWTLKSKAPLKGPFSVRFLVKGGGYRVV 98 (118)
T ss_pred eCCEEEEEEeecCCCcccC--ccccCccceeEecCCCCCCCceEEEEEEeCCCEEEE
Confidence 4344678888863 46752 69887 678987543 3458999999886 665443
No 76
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=30.09 E-value=76 Score=24.28 Aligned_cols=32 Identities=22% Similarity=0.493 Sum_probs=21.5
Q ss_pred eeeeecC---CcEEEEEECCCccEEEEEEEcCeeccCCC
Q 028250 50 IALQRSG---KDFTIMKVLPSGVYQYRFLVDGLWKYAPD 85 (211)
Q Consensus 50 ~~L~k~~---~~f~~~~~Lp~G~y~YKFiVDG~w~~dp~ 85 (211)
+-.+|.. +-|... |.|-|+|.|. +|.|+...+
T Consensus 48 ~VINkQ~p~~QIWlas---~sG~~hf~~~-~~~W~~~r~ 82 (105)
T PRK00446 48 IIINRQEPLHELWLAA---KSGGFHFDYK-DGEWICDRS 82 (105)
T ss_pred EEEeCCCchhheeEec---CCCCccceec-CCeEEECCC
Confidence 4445543 336554 5799999995 999998743
No 77
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=27.31 E-value=38 Score=33.42 Aligned_cols=33 Identities=18% Similarity=0.286 Sum_probs=25.4
Q ss_pred cEEEEEECCCc-cEEEEEEEcCe----eccCCCCCcee
Q 028250 58 DFTIMKVLPSG-VYQYRFLVDGL----WKYAPDLPSTQ 90 (211)
Q Consensus 58 ~f~~~~~Lp~G-~y~YKFiVDG~----w~~dp~~p~~~ 90 (211)
.+-+.+.++|| .|.|+|.||++ |-++.......
T Consensus 99 ~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra 136 (563)
T KOG1263|consen 99 VYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRA 136 (563)
T ss_pred CccccCCcCCCCeEEEEEEeCCcceeEEEeeccccccc
Confidence 56678899999 79999999943 77776665543
No 78
>COG3397 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.15 E-value=3.3e+02 Score=24.92 Aligned_cols=71 Identities=18% Similarity=0.439 Sum_probs=44.0
Q ss_pred eEEEEecCCC------CeEEEEeccCCCccceeeeecCCc---EEEE--EECCCc-cEEEEEEEc----------Ceecc
Q 028250 25 PTMITWSHDG------CEVAVEGSWDNWKTRIALQRSGKD---FTIM--KVLPSG-VYQYRFLVD----------GLWKY 82 (211)
Q Consensus 25 pv~f~w~~~g------~~V~V~GsF~nW~~~~~L~k~~~~---f~~~--~~Lp~G-~y~YKFiVD----------G~w~~ 82 (211)
+.+|+|..-+ =++||+= .+|.+..||.+++=+ |..+ ..+.|| .|++.-.|= +.|-.
T Consensus 115 ~~~f~w~~TapH~t~~w~yYiTK--~~wdpnkPLt~~dlEL~p~~~i~~~g~~p~~~~~~~~~iP~~rtGy~VI~~vWq~ 192 (308)
T COG3397 115 PQTFVWKATAPHNTAYWKYYITK--PGWDPNKPLTWDDLELAPFCSITGVGLEPGKNYRHECTIPQDRTGYHVIYAVWQR 192 (308)
T ss_pred ceEEEEEeecCCCCcceEEEECC--CCCCCCCCccHHhcccccceeecccccCCCcceeEEEecCCCCcccEEEEEEEEe
Confidence 6788887543 2578875 789887788776422 4332 456666 566655543 34433
Q ss_pred CCCCCceeCCCCceeceEeecc
Q 028250 83 APDLPSTQDDDGNVYNILDLQE 104 (211)
Q Consensus 83 dp~~p~~~d~~G~~nNvi~V~~ 104 (211)
.|..+.++|+|+|.-
T Consensus 193 -------~Dt~n~Fyn~iDv~~ 207 (308)
T COG3397 193 -------ADTGNAFYNCIDVNF 207 (308)
T ss_pred -------ccCCCcceEEEEEec
Confidence 355557889999863
No 79
>PF10634 Iron_transport: Fe2+ transport protein; InterPro: IPR018470 This is a bacterial family of periplasmic proteins that are thought to function in high-affinity Fe2+ transport.; PDB: 3LZP_B 3LZN_B 3LZR_A 3LZQ_B 3LZO_A 3LZL_B 3PJN_A 3PJL_A 2O6D_A 2O6C_B ....
Probab=26.13 E-value=2e+02 Score=23.62 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=24.1
Q ss_pred EEEEeccCCCccceeeeecCCc-EEEEEEC-CCccEEEEEEEc
Q 028250 37 VAVEGSWDNWKTRIALQRSGKD-FTIMKVL-PSGVYQYRFLVD 77 (211)
Q Consensus 37 V~V~GsF~nW~~~~~L~k~~~~-f~~~~~L-p~G~y~YKFiVD 77 (211)
....|+| .||..+.+- |-.-+.| .+|+|+-+|.|+
T Consensus 81 ~~~~G~~------mPM~A~DGpHYG~Nvkl~g~G~Y~v~~~I~ 117 (151)
T PF10634_consen 81 KVQEGTF------MPMVASDGPHYGDNVKLDGPGKYKVTFTIG 117 (151)
T ss_dssp EEEEEEE------EEEEETTEEEEEEEE-STSSEEEEEEEEEE
T ss_pred eEEEEec------ceeecCcCccccccccCCCCccEEEEEEEc
Confidence 3566666 468766443 5556777 589999999998
No 80
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=24.71 E-value=1.3e+02 Score=22.97 Aligned_cols=32 Identities=22% Similarity=0.480 Sum_probs=21.7
Q ss_pred eeecCCcEEEEEECC-CccEEEEEEEcCeeccCC
Q 028250 52 LQRSGKDFTIMKVLP-SGVYQYRFLVDGLWKYAP 84 (211)
Q Consensus 52 L~k~~~~f~~~~~Lp-~G~y~YKFiVDG~w~~dp 84 (211)
+.|..-.-.+-+-=| .|-|+|.|. +|.|+..-
T Consensus 53 INkQ~p~~QIWlsSpisG~~hf~~~-~~~W~~~r 85 (109)
T PF01491_consen 53 INKQPPNRQIWLSSPISGPFHFDYD-DGKWIDTR 85 (109)
T ss_dssp EEEECCCTEEEEEETTTEEEEEEEE-SSSEEETT
T ss_pred EeCCCHHHHHHHhcccCCceEEEEc-CCEEEECC
Confidence 444433334444456 899999999 99999764
No 81
>TIGR01159 DRP1 density-regulated protein DRP1. This protein family shows weak but suggestive similarity to translation initiation factor SUI1 and its prokaryotic homologs.
Probab=24.38 E-value=83 Score=26.34 Aligned_cols=21 Identities=33% Similarity=0.422 Sum_probs=18.4
Q ss_pred CCcEEEEEeeeeecceeeEEE
Q 028250 184 GPSVVALGSTHRFLAKYVTVV 204 (211)
Q Consensus 184 ~~~vl~l~~T~Ry~~KyvTtv 204 (211)
....+.+....|=++|+||+|
T Consensus 87 ~~~~V~I~~~~R~krK~VT~V 107 (173)
T TIGR01159 87 LPQKVTIKREPRTKRKFVTVI 107 (173)
T ss_pred CCCeEEEEEEecCCCceEEEE
Confidence 456788999999999999998
No 82
>TIGR01160 SUI1_MOF2 translation initiation factor SUI1, eukaryotic. Alternate name: MOF2. A similar protein family (see TIGRFAMs model TIGR01158) is found in prokaryotes. The human proteins complements a yeast SUI1 mutatation.
Probab=22.86 E-value=91 Score=24.21 Aligned_cols=20 Identities=20% Similarity=0.157 Sum_probs=16.7
Q ss_pred CcEEEEEeeeeecceeeEEE
Q 028250 185 PSVVALGSTHRFLAKYVTVV 204 (211)
Q Consensus 185 ~~vl~l~~T~Ry~~KyvTtv 204 (211)
.+++.+-...|=.+|+||+|
T Consensus 25 ~~~I~Iri~qR~grK~VTiI 44 (110)
T TIGR01160 25 SNYIHIRIQQRNGRKTLTTV 44 (110)
T ss_pred cceEEEEEEEccCCccEEEE
Confidence 45788888888888999998
No 83
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=22.43 E-value=80 Score=20.82 Aligned_cols=22 Identities=27% Similarity=0.600 Sum_probs=13.3
Q ss_pred EEECCCccEEEEEEE---cCeeccC
Q 028250 62 MKVLPSGVYQYRFLV---DGLWKYA 83 (211)
Q Consensus 62 ~~~Lp~G~y~YKFiV---DG~w~~d 83 (211)
...|+||.|.++-.+ +|.|..+
T Consensus 33 ~~~L~~G~Y~l~V~a~~~~~~~~~~ 57 (66)
T PF07495_consen 33 YTNLPPGKYTLEVRAKDNNGKWSSD 57 (66)
T ss_dssp EES--SEEEEEEEEEEETTS-B-SS
T ss_pred EEeCCCEEEEEEEEEECCCCCcCcc
Confidence 358999999998876 3667654
No 84
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=22.02 E-value=1.3e+02 Score=28.26 Aligned_cols=23 Identities=17% Similarity=0.098 Sum_probs=18.7
Q ss_pred CcEEEE--EECCCccEEEEEEEcCe
Q 028250 57 KDFTIM--KVLPSGVYQYRFLVDGL 79 (211)
Q Consensus 57 ~~f~~~--~~Lp~G~y~YKFiVDG~ 79 (211)
+.|+.. +..++|.|+.++.+||.
T Consensus 171 GvFT~~l~l~~~~G~Y~~~v~~~n~ 195 (374)
T TIGR03503 171 GIFTGEFNLDVAPGEYRPTYQSRNP 195 (374)
T ss_pred ceEEEEeeccCCCceEEEEEEEcCc
Confidence 458776 45679999999999985
No 85
>smart00230 CysPc Calpain-like thiol protease family. Calpain-like thiol protease family (peptidase family C2). Calcium activated neutral protease (large subunit).
Probab=21.21 E-value=75 Score=28.58 Aligned_cols=25 Identities=28% Similarity=0.624 Sum_probs=20.3
Q ss_pred CCCccEEEEEEEcCeec---cCCCCCce
Q 028250 65 LPSGVYQYRFLVDGLWK---YAPDLPST 89 (211)
Q Consensus 65 Lp~G~y~YKFiVDG~w~---~dp~~p~~ 89 (211)
-+.|.|..||.++|.|+ +|+..|..
T Consensus 98 ~~~G~y~vrl~~~G~w~~V~VDd~lP~~ 125 (318)
T smart00230 98 NYAGIFHFRFWRFGKWVDVVIDDRLPTY 125 (318)
T ss_pred ccCCEEEEEEEECCEEEEEEecCCCeee
Confidence 46799999999999975 57777764
No 86
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=21.17 E-value=1.2e+02 Score=23.00 Aligned_cols=21 Identities=24% Similarity=0.559 Sum_probs=16.0
Q ss_pred ECCCccEEEEEEEcCeeccCCC
Q 028250 64 VLPSGVYQYRFLVDGLWKYAPD 85 (211)
Q Consensus 64 ~Lp~G~y~YKFiVDG~w~~dp~ 85 (211)
-=|.|-|+|.|. ||.|+..-+
T Consensus 60 aspsG~~hF~~~-~~~Wi~~r~ 80 (102)
T TIGR03421 60 AAKSGGFHFDYD-GGAWIDTRD 80 (102)
T ss_pred ecCCCCccceec-CCEEEECCC
Confidence 345788999994 899997644
Done!