Citrus Sinensis ID: 028251

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-
Protein Sequence
MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGCCS
Secondary Structure (PSIPRED)
ccccEEEEEEEEccccccHHHHHHHHHHcccccccccccEEEEcEEEEEEccEEEEEEEEcccccHHHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHHHHHHHcccccEEEEEEEcccccccccccHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEEccccccHHHHHHHHHHccccccccccccEEEEEEEEEEccEEEEEEEEEEcccHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHHHHHHcccccEEEEEEEcHHHHHHccccHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHHccccHHccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MSYDYLFKYIIIGdtgvgksclllqftdkrfqpvhdltiGVEFGArmvtidgrpiklQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDArqhanpnmsIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGAldavndqsgikvgygrgqgpsgardgtvsqrggccs
Flexible Loop (DISEMBL)
MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGrgqgpsgardgtvsqrggccs
Low Complexity Region (SEG)
MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGCCS
Disordered region (IsUnstruct)
**YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR***********KENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVND**GIKV************************
Disordered Region (DISOPRED)
MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ************************************RGGCCS
Disordered Region (DISEMBL)
MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR*********FAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYG*********************
Disordered Region (DISPRO)
*SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE**************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGCCS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	211	2.2.26 [Sep-21-2011]
Q38922	211	Ras-related protein RABB1	yes	no	0.995	0.995	0.9	1e-112
P92963	211	Ras-related protein RABB1	no	no	0.995	0.995	0.847	1e-104
P36863	213	GTP-binding protein yptV4	N/A	no	0.995	0.985	0.788	5e-97
Q39570	213	GTP-binding protein YPTC4	N/A	no	0.995	0.985	0.784	3e-96
P49104	210	Ras-related protein Rab-2	N/A	no	0.900	0.904	0.852	2e-95
P49103	209	Ras-related protein Rab-2	N/A	no	0.895	0.904	0.851	9e-95
P53994	212	Ras-related protein Rab-2	yes	no	0.995	0.990	0.731	2e-87
Q5R6B6	212	Ras-related protein Rab-2	yes	no	0.890	0.886	0.792	4e-87
Q4R4X6	212	Ras-related protein Rab-2	N/A	no	0.890	0.886	0.792	4e-87
P61019	212	Ras-related protein Rab-2	yes	no	0.890	0.886	0.792	4e-87

>sp|Q38922|RAB1B_ARATH Ras-related protein RABB1b OS=Arabidopsis thaliana GN=RABB1B PE=2 SV=1

 Score =  404 bits (1037), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 189/210 (90%), Positives = 201/210 (95%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVT+DGRPIKLQIW
Sbjct: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTVDGRPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHANPNMSIML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLIGNK 120

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
           CDLAH+RAVSKEEG+QFAKE+GLLFLEASARTAQNVEEAFI+TAAKILQNIQ+G  D  N
Sbjct: 121 CDLAHKRAVSKEEGQQFAKEHGLLFLEASARTAQNVEEAFIETAAKILQNIQDGVFDVSN 180

Query: 181 DQSGIKVGYGRGQGPSGARDGTVSQRGGCC 210
           + SGIK+GYGR QG +G RDGT+SQ GGCC
Sbjct: 181 ESSGIKIGYGRTQGAAGGRDGTISQGGGCC 210

Intracellular vesicle trafficking and protein transport.
Arabidopsis thaliana (taxid: 3702)

>sp|P92963|RAB1C_ARATH Ras-related protein RABB1c OS=Arabidopsis thaliana GN=RABB1C PE=2 SV=1

 Score =  379 bits (972), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 178/210 (84%), Positives = 191/210 (90%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MSY YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TID +PIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHAN NM+IML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
           CDLAHRRAVS EEGEQFAKE+GL+F+EASA+TAQNVEEAFIKTAA I + IQ+G  D  N
Sbjct: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180

Query: 181 DQSGIKVGYGRGQGPSGARDGTVSQRGGCC 210
           +  GIKVGYG   GPSG RDG+ SQ GGCC
Sbjct: 181 ESYGIKVGYGGIPGPSGGRDGSTSQGGGCC 210

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|P36863|YPTV4_VOLCA GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1

 Score =  353 bits (905), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 168/213 (78%), Positives = 183/213 (85%), Gaps = 3/213 (1%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MSY YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+ IDG+ IKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHANPNM+IML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNK 120

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
           CDL HRRAV+ EEGEQFAKE+GL+FLE SARTA NVEEAFI TA +I + IQ+G  D  N
Sbjct: 121 CDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKIQDGVFDVSN 180

Query: 181 DQSGIKVGYGRGQ-GPSGAR--DGTVSQRGGCC 210
           +  GIKVGYG G  GP  A+  +G   +   CC
Sbjct: 181 ESYGIKVGYGAGNAGPQAAKPGEGDARKSSSCC 213

Protein transport. Probably involved in vesicular traffic.

Volvox carteri (taxid: 3067)

>sp|Q39570|YPTC4_CHLRE GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii GN=YPTC4 PE=3 SV=1

 Score =  350 bits (899), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 167/213 (78%), Positives = 183/213 (85%), Gaps = 3/213 (1%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MSY YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+ IDG+ IKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHANPNM+IML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNK 120

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
           CDL HRRAV+ EEGEQFAKE+GL+FLE SARTA NVEEAFI TA +I + IQ+G  D  N
Sbjct: 121 CDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKIQDGVFDVSN 180

Query: 181 DQSGIKVGYGRGQ-GPSGAR--DGTVSQRGGCC 210
           +  GIKVGYG G  GP   +  +G  ++   CC
Sbjct: 181 ESYGIKVGYGGGNAGPQTVKPGEGGAAKSSSCC 213

Protein transport. Probably involved in vesicular traffic.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|P49104|RAB2B_MAIZE Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B PE=2 SV=1

 Score =  348 bits (892), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 162/190 (85%), Positives = 175/190 (92%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MSY YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TID +PIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHAN NM+IMLVGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNK 120

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
           CDL+HRRAVS EEGEQFAKE+GL+F+EASA+TAQNVEEAF+KTA  I + IQ+G  D  N
Sbjct: 121 CDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKIQDGVFDVSN 180

Query: 181 DQSGIKVGYG 190
           +  GIKVGY 
Sbjct: 181 ESYGIKVGYA 190

Protein transport. Probably involved in vesicular traffic.

Zea mays (taxid: 4577)

>sp|P49103|RAB2A_MAIZE Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A PE=2 SV=1

 Score =  345 bits (886), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 161/189 (85%), Positives = 174/189 (92%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MSY YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+ ID +PIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDNKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHAN NM+IMLVGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNK 120

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
           CDL+HRRAVS EEGEQFAKE+GL+F+EASA+TAQNVEEAF+KTA  I + IQ+G  D  N
Sbjct: 121 CDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKIQDGVFDVSN 180

Query: 181 DQSGIKVGY 189
           +  GIKVGY
Sbjct: 181 ESYGIKVGY 189

Protein transport. Probably involved in vesicular traffic.

Zea mays (taxid: 4577)

>sp|P53994|RAB2A_MOUSE Ras-related protein Rab-2A OS=Mus musculus GN=Rab2a PE=1 SV=1

 Score =  321 bits (823), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 155/212 (73%), Positives = 175/212 (82%), Gaps = 2/212 (0%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           M+Y YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TIDG+ IKLQIW
Sbjct: 1   MAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL++WLEDARQH+N NM IML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNK 120

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
            DL  RR V KEEGE FA+E+GL+F+E SA+TA NVEEAFI TA +I + IQEG  D  N
Sbjct: 121 SDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINN 180

Query: 181 DQSGIKVG--YGRGQGPSGARDGTVSQRGGCC 210
           + +GIK+G  +       G+  G     GGCC
Sbjct: 181 EANGIKIGPQHAATNASHGSNQGGQQAGGGCC 212

Required for protein transport from the endoplasmic reticulum to the Golgi complex.

Mus musculus (taxid: 10090)

>sp|Q5R6B6|RAB2A_PONAB Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2A PE=2 SV=1

 Score =  320 bits (821), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 149/188 (79%), Positives = 167/188 (88%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           M+Y YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TIDG+ IKLQIW
Sbjct: 1   MAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL++WLEDARQH+N NM IML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNK 120

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
            DL  RR V KEEGE FA+E+GL+F+E SA+TA NVEEAFI TA +I + IQEG  D  N
Sbjct: 121 SDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINN 180

Query: 181 DQSGIKVG 188
           + +GIK+G
Sbjct: 181 EANGIKIG 188

Required for protein transport from the endoplasmic reticulum to the Golgi complex.

Pongo abelii (taxid: 9601)

>sp|Q4R4X6|RAB2A_MACFA Ras-related protein Rab-2A OS=Macaca fascicularis GN=RAB2A PE=2 SV=1

 Score =  320 bits (821), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 149/188 (79%), Positives = 167/188 (88%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           M+Y YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TIDG+ IKLQIW
Sbjct: 1   MAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL++WLEDARQH+N NM IML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNK 120

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
            DL  RR V KEEGE FA+E+GL+F+E SA+TA NVEEAFI TA +I + IQEG  D  N
Sbjct: 121 SDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINN 180

Query: 181 DQSGIKVG 188
           + +GIK+G
Sbjct: 181 EANGIKIG 188

Required for protein transport from the endoplasmic reticulum to the Golgi complex.

Macaca fascicularis (taxid: 9541)

>sp|P61019|RAB2A_HUMAN Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2A PE=1 SV=1

 Score =  320 bits (821), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 149/188 (79%), Positives = 167/188 (88%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           M+Y YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TIDG+ IKLQIW
Sbjct: 1   MAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL++WLEDARQH+N NM IML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNK 120

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
            DL  RR V KEEGE FA+E+GL+F+E SA+TA NVEEAFI TA +I + IQEG  D  N
Sbjct: 121 SDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINN 180

Query: 181 DQSGIKVG 188
           + +GIK+G
Sbjct: 181 EANGIKIG 188

Required for protein transport from the endoplasmic reticulum to the Golgi complex.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
449455912	211	PREDICTED: ras-related protein RABB1b-li	0.995	0.995	0.947	1e-114
255570175	211	protein with unknown function [Ricinus c	1.0	1.0	0.924	1e-113
224102877	211	predicted protein [Populus trichocarpa]	1.0	1.0	0.933	1e-113
225452278	209	PREDICTED: ras-related protein RABB1b [V	0.990	1.0	0.933	1e-112
297798332	211	GTP-binding 2 [Arabidopsis lyrata subsp.	0.995	0.995	0.914	1e-111
356570243	211	PREDICTED: ras-related protein RABB1b-li	1.0	1.0	0.909	1e-111
15233367	211	GTP-binding protein GB2 [Arabidopsis tha	0.995	0.995	0.9	1e-110
363808076	211	uncharacterized protein LOC100797461 [Gl	1.0	1.0	0.895	1e-109
6624302	211	small GTP-binding protein [Carica papaya	0.995	0.995	0.9	1e-108
357496971	211	Small GTP-binding protein [Medicago trun	1.0	1.0	0.881	1e-108

>gi|449455912|ref|XP_004145694.1| PREDICTED: ras-related protein RABB1b-like [Cucumis sativus] gi|449492910|ref|XP_004159138.1| PREDICTED: ras-related protein RABB1b-like [Cucumis sativus]

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 199/210 (94%), Positives = 202/210 (96%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID RPIKLQIW
Sbjct: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDARPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHANPNMSIMLVGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLVGNK 120

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
            DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG  D  N
Sbjct: 121 ADLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGVFDVSN 180

Query: 181 DQSGIKVGYGRGQGPSGARDGTVSQRGGCC 210
           + SGIKVGYGR QGPSGARDGTV+QRGGCC
Sbjct: 181 ESSGIKVGYGRPQGPSGARDGTVAQRGGCC 210

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570175|ref|XP_002526048.1| protein with unknown function [Ricinus communis] gi|223534629|gb|EEF36325.1| protein with unknown function [Ricinus communis]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 195/211 (92%), Positives = 202/211 (95%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID RPIKLQIW
Sbjct: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDSRPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHANPNM+IML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNK 120

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
           CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI+TA KILQNIQEG  D  N
Sbjct: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIRTAGKILQNIQEGVFDVSN 180

Query: 181 DQSGIKVGYGRGQGPSGARDGTVSQRGGCCS 211
           + SGIKVGYGR QGPSG+RDG V+QRGGCCS
Sbjct: 181 ESSGIKVGYGRPQGPSGSRDGAVAQRGGCCS 211

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102877|ref|XP_002312839.1| predicted protein [Populus trichocarpa] gi|118481778|gb|ABK92828.1| unknown [Populus trichocarpa] gi|222849247|gb|EEE86794.1| predicted protein [Populus trichocarpa]

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/211 (93%), Positives = 201/211 (95%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID RPIKLQIW
Sbjct: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDARPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHANPNMSIML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLIGNK 120

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
           CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI TA KILQNIQEG  D  N
Sbjct: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIGTAGKILQNIQEGVFDVSN 180

Query: 181 DQSGIKVGYGRGQGPSGARDGTVSQRGGCCS 211
           + SGIKVGYGR QG SGARDGTV+QRGGCCS
Sbjct: 181 ESSGIKVGYGRPQGASGARDGTVAQRGGCCS 211

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452278|ref|XP_002270701.1| PREDICTED: ras-related protein RABB1b [Vitis vinifera] gi|296087576|emb|CBI34832.3| unnamed protein product [Vitis vinifera]

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 197/211 (93%), Positives = 203/211 (96%), Gaps = 2/211 (0%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW
Sbjct: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHANPNM+IML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNK 120

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
           CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA+ILQNIQEG  D  N
Sbjct: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAARILQNIQEGVFDLSN 180

Query: 181 DQSGIKVGYGRGQGPSGARDGTVSQRGGCCS 211
           + SGIKVGYGR QGPSG  DGTVSQRGGCC+
Sbjct: 181 ESSGIKVGYGRPQGPSG--DGTVSQRGGCCN 209

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798332|ref|XP_002867050.1| GTP-binding 2 [Arabidopsis lyrata subsp. lyrata] gi|297312886|gb|EFH43309.1| GTP-binding 2 [Arabidopsis lyrata subsp. lyrata]

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 192/210 (91%), Positives = 201/210 (95%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVT+DGRPIKLQIW
Sbjct: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTVDGRPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHANPNMSIML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLIGNK 120

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
           CDLAH+RAVSKEEGEQFAKE+GLLFLEASARTAQNVEEAFIKTAAKILQNIQ+G  D  N
Sbjct: 121 CDLAHKRAVSKEEGEQFAKEHGLLFLEASARTAQNVEEAFIKTAAKILQNIQDGVFDVSN 180

Query: 181 DQSGIKVGYGRGQGPSGARDGTVSQRGGCC 210
           + SGIKVGYGR QG +G RDGT+SQ GGCC
Sbjct: 181 ESSGIKVGYGRTQGAAGGRDGTISQGGGCC 210

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570243|ref|XP_003553299.1| PREDICTED: ras-related protein RABB1b-like [Glycine max]

 Score =  404 bits (1039), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 192/211 (90%), Positives = 199/211 (94%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID RPIKLQIW
Sbjct: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDSRPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL+SWLEDARQHANPNM+IML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLASWLEDARQHANPNMTIMLIGNK 120

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
           CDL+HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI+TA KILQNIQEG  D  N
Sbjct: 121 CDLSHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIRTAGKILQNIQEGVFDVSN 180

Query: 181 DQSGIKVGYGRGQGPSGARDGTVSQRGGCCS 211
           +  GIKVGYGR QG  GARDGTVS RGGCCS
Sbjct: 181 ESFGIKVGYGRPQGQPGARDGTVSARGGCCS 211

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15233367|ref|NP_195311.1| GTP-binding protein GB2 [Arabidopsis thaliana] gi|75281787|sp|Q38922.1|RAB1B_ARATH RecName: Full=Ras-related protein RABB1b; Short=AtRABB1b; AltName: Full=Ras-related protein GB2; Short=AtGB2; AltName: Full=Ras-related protein Rab2C; Short=AtRab2C gi|1184983|gb|AAA87883.1| ATGB2 [Arabidopsis thaliana] gi|3805852|emb|CAA21472.1| GTP-binding protein GB2 [Arabidopsis thaliana] gi|7270538|emb|CAB81495.1| GTP-binding protein GB2 [Arabidopsis thaliana] gi|17529056|gb|AAL38738.1| putative GTP-binding protein GB2 [Arabidopsis thaliana] gi|21436445|gb|AAM51423.1| putative GTP-binding protein GB2 [Arabidopsis thaliana] gi|21553875|gb|AAM62968.1| GTP-binding protein GB2 [Arabidopsis thaliana] gi|332661181|gb|AEE86581.1| GTP-binding protein GB2 [Arabidopsis thaliana]

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 189/210 (90%), Positives = 201/210 (95%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVT+DGRPIKLQIW
Sbjct: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTVDGRPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHANPNMSIML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLIGNK 120

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
           CDLAH+RAVSKEEG+QFAKE+GLLFLEASARTAQNVEEAFI+TAAKILQNIQ+G  D  N
Sbjct: 121 CDLAHKRAVSKEEGQQFAKEHGLLFLEASARTAQNVEEAFIETAAKILQNIQDGVFDVSN 180

Query: 181 DQSGIKVGYGRGQGPSGARDGTVSQRGGCC 210
           + SGIK+GYGR QG +G RDGT+SQ GGCC
Sbjct: 181 ESSGIKIGYGRTQGAAGGRDGTISQGGGCC 210

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808076|ref|NP_001241959.1| uncharacterized protein LOC100797461 [Glycine max] gi|255639407|gb|ACU19999.1| unknown [Glycine max]

 Score =  398 bits (1023), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 189/211 (89%), Positives = 199/211 (94%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMV+ID RPIKLQIW
Sbjct: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVSIDSRPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL+SWLEDARQHANPNM+IML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLASWLEDARQHANPNMTIMLIGNK 120

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
           CDL+HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI+TA KILQNI+EG  D  N
Sbjct: 121 CDLSHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIRTAGKILQNIKEGVFDVSN 180

Query: 181 DQSGIKVGYGRGQGPSGARDGTVSQRGGCCS 211
           +  GIKVGYGR QG SGARDGTVS +GG CS
Sbjct: 181 ESFGIKVGYGRPQGQSGARDGTVSAKGGRCS 211

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6624302|dbj|BAA88497.1| small GTP-binding protein [Carica papaya]

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 189/210 (90%), Positives = 198/210 (94%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMV IDGRPIKLQI 
Sbjct: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVAIDGRPIKLQIR 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHANPNMSIML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLIGNK 120

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
            DL+HRRAVSKEEGEQFAKE+GLLFLEASARTAQNVEEAFI+TAAKILQNIQEG +D  N
Sbjct: 121 SDLSHRRAVSKEEGEQFAKEHGLLFLEASARTAQNVEEAFIRTAAKILQNIQEGVIDVSN 180

Query: 181 DQSGIKVGYGRGQGPSGARDGTVSQRGGCC 210
           + SGIK GYGR QG +GARDG V+QR GCC
Sbjct: 181 ESSGIKFGYGRPQGTAGARDGAVAQRSGCC 210

Source: Carica papaya

Species: Carica papaya

Genus: Carica

Family: Caricaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357496971|ref|XP_003618774.1| Small GTP-binding protein [Medicago truncatula] gi|355493789|gb|AES74992.1| Small GTP-binding protein [Medicago truncatula]

 Score =  395 bits (1015), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 186/211 (88%), Positives = 197/211 (93%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TID RPIKLQIW
Sbjct: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMLTIDSRPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHANPNM+I L+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTITLIGNK 120

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
           CDL+HRRAVSKEEGEQFAKENGLLF+EASA+TAQNVEEAFIKTAAKILQNIQ+G  D  N
Sbjct: 121 CDLSHRRAVSKEEGEQFAKENGLLFMEASAKTAQNVEEAFIKTAAKILQNIQDGVFDVSN 180

Query: 181 DQSGIKVGYGRGQGPSGARDGTVSQRGGCCS 211
           +  GIKVGYGR QG +G RDGTV+  G CCS
Sbjct: 181 ETCGIKVGYGRPQGQAGGRDGTVAAGGACCS 211

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
TAIR|locus:2125384	211	GB2 "GTP-binding 2" [Arabidops	0.995	0.995	0.9	1.4e-101
TAIR|locus:2130624	211	RABB1C "AT4G17170" [Arabidopsi	0.995	0.995	0.847	2.3e-94
MGI|MGI:1928750	212	Rab2a "RAB2A, member RAS oncog	0.995	0.990	0.731	1.1e-80
UNIPROTKB|Q01971	212	RAB2A "Ras-related protein Rab	0.995	0.990	0.731	1.4e-80
ZFIN|ZDB-GENE-011212-2	212	rab2a "RAB2A, member RAS oncog	0.995	0.990	0.731	1.8e-80
FB|FBgn0014009	213	Rab2 "Rab2" [Drosophila melano	0.995	0.985	0.741	2.9e-80
RGD|68323	212	Rab2a "RAB2A, member RAS oncog	0.995	0.990	0.726	2.9e-80
UNIPROTKB|G1K288	232	RAB2A "Ras-related protein Rab	0.995	0.905	0.726	6e-80
UNIPROTKB|P61105	212	RAB2A "Ras-related protein Rab	0.995	0.990	0.726	6e-80
UNIPROTKB|P61019	212	RAB2A "Ras-related protein Rab	0.995	0.990	0.726	6e-80

TAIR|locus:2125384 GB2 "GTP-binding 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1007 (359.5 bits), Expect = 1.4e-101, P = 1.4e-101
 Identities = 189/210 (90%), Positives = 201/210 (95%)

Query:     1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
             MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVT+DGRPIKLQIW
Sbjct:     1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTVDGRPIKLQIW 60

Query:    61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
             DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHANPNMSIML+GNK
Sbjct:    61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLIGNK 120

Query:   121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
             CDLAH+RAVSKEEG+QFAKE+GLLFLEASARTAQNVEEAFI+TAAKILQNIQ+G  D  N
Sbjct:   121 CDLAHKRAVSKEEGQQFAKEHGLLFLEASARTAQNVEEAFIETAAKILQNIQDGVFDVSN 180

Query:   181 DQSGIKVGYGRGQGPSGARDGTVSQRGGCC 210
             + SGIK+GYGR QG +G RDGT+SQ GGCC
Sbjct:   181 ESSGIKIGYGRTQGAAGGRDGTISQGGGCC 210

GO:0005525 "GTP binding" evidence=IEA;ISS;IDA

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2130624 RABB1C "AT4G17170" [Arabidopsis thaliana (taxid:3702)]

 Score = 939 (335.6 bits), Expect = 2.3e-94, P = 2.3e-94
 Identities = 178/210 (84%), Positives = 191/210 (90%)

Query:     1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
             MSY YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TID +PIKLQIW
Sbjct:     1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query:    61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
             DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHAN NM+IML+GNK
Sbjct:    61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120

Query:   121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
             CDLAHRRAVS EEGEQFAKE+GL+F+EASA+TAQNVEEAFIKTAA I + IQ+G  D  N
Sbjct:   121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180

Query:   181 DQSGIKVGYGRGQGPSGARDGTVSQRGGCC 210
             +  GIKVGYG   GPSG RDG+ SQ GGCC
Sbjct:   181 ESYGIKVGYGGIPGPSGGRDGSTSQGGGCC 210

GO:0003924 "GTPase activity" evidence=ISS

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=TAS

MGI|MGI:1928750 Rab2a "RAB2A, member RAS oncogene family" [Mus musculus (taxid:10090)]

 Score = 810 (290.2 bits), Expect = 1.1e-80, P = 1.1e-80
 Identities = 155/212 (73%), Positives = 175/212 (82%)

Query:     1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
             M+Y YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TIDG+ IKLQIW
Sbjct:     1 MAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIW 60

Query:    61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
             DTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL++WLEDARQH+N NM IML+GNK
Sbjct:    61 DTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNK 120

Query:   121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
              DL  RR V KEEGE FA+E+GL+F+E SA+TA NVEEAFI TA +I + IQEG  D  N
Sbjct:   121 SDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINN 180

Query:   181 DQSGIKVG--YGRGQGPSGARDGTVSQRGGCC 210
             + +GIK+G  +       G+  G     GGCC
Sbjct:   181 EANGIKIGPQHAATNASHGSNQGGQQAGGGCC 212

GO:0000139 "Golgi membrane" evidence=ISO

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=ISO

GO:0005525 "GTP binding" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006184 "GTP catabolic process" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=TAS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=ISO

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0019003 "GDP binding" evidence=ISO

GO:0043025 "neuronal cell body" evidence=ISO

UNIPROTKB|Q01971 RAB2A "Ras-related protein Rab-2A" [Oryctolagus cuniculus (taxid:9986)]

 Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
 Identities = 155/212 (73%), Positives = 174/212 (82%)

Query:     1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
             M+Y YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TIDG+ IKLQIW
Sbjct:     1 MAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIW 60

Query:    61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
             DTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL++WLEDARQH+N NM IML+GNK
Sbjct:    61 DTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNK 120

Query:   121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
              DL  RR V KEEGE FA+E+GL+F+E SA+TA NVEEAFI TA +I + IQEG  D  N
Sbjct:   121 SDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINN 180

Query:   181 DQSGIKVG--YGRGQGPSGARDGTVSQRGGCC 210
             + +GIK+G  +G          G     GGCC
Sbjct:   181 EANGIKIGPQHGATNATHAGNQGGQQAGGGCC 212

GO:0003924 "GTPase activity" evidence=ISS

GO:0005525 "GTP binding" evidence=ISS

GO:0006184 "GTP catabolic process" evidence=ISS

GO:0019003 "GDP binding" evidence=ISS

ZFIN|ZDB-GENE-011212-2 rab2a "RAB2A, member RAS oncogene family" [Danio rerio (taxid:7955)]

 Score = 808 (289.5 bits), Expect = 1.8e-80, P = 1.8e-80
 Identities = 155/212 (73%), Positives = 174/212 (82%)

Query:     1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
             M+Y YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TIDG+ IKLQIW
Sbjct:     1 MAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIW 60

Query:    61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
             DTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL++WLEDARQH+N NM IML+GNK
Sbjct:    61 DTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNK 120

Query:   121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
              DL  RR V KEEGE FA+E+GL+F+E SA+TA NVEEAFI TA +I + IQEG  D  N
Sbjct:   121 SDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINN 180

Query:   181 DQSGIKVG--YGRGQGPSGARDGTVSQRGGCC 210
             + +GIK+G  +       G   G     GGCC
Sbjct:   181 EANGIKIGPQHAATNSTMGGSQGGQQAGGGCC 212

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

FB|FBgn0014009 Rab2 "Rab2" [Drosophila melanogaster (taxid:7227)]

 Score = 806 (288.8 bits), Expect = 2.9e-80, P = 2.9e-80
 Identities = 158/213 (74%), Positives = 175/213 (82%)

Query:     1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
             MSY YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TIDG+ IKLQIW
Sbjct:     1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIW 60

Query:    61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
             DTAGQE+FRSITRSYYRGAAGALLVYDITRRETFNHL++WLEDARQH+N NM IML+GNK
Sbjct:    61 DTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNK 120

Query:   121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
              DL  RR V KEEGE FA+E+GL+F+E SARTA NVEEAFI TA +I + IQEG  D  N
Sbjct:   121 SDLDSRREVKKEEGEAFAREHGLVFMETSARTAANVEEAFINTAKEIYEKIQEGVFDINN 180

Query:   181 DQSGIKVGYGRGQ-GPS--GARDGTVSQRGGCC 210
             + +GIK+G       PS  GA     +   GCC
Sbjct:   181 EANGIKIGQQHSPTNPSLPGAGGAAGAANSGCC 213

GO:0003924 "GTPase activity" evidence=ISS;NAS

GO:0005525 "GTP binding" evidence=IEA;NAS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0031982 "vesicle" evidence=ISS

RGD|68323 Rab2a "RAB2A, member RAS oncogene family" [Rattus norvegicus (taxid:10116)]

 Score = 806 (288.8 bits), Expect = 2.9e-80, P = 2.9e-80
 Identities = 154/212 (72%), Positives = 174/212 (82%)

Query:     1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
             M+Y YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT+GVEFGARM+TIDG+ IKLQIW
Sbjct:     1 MAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTMGVEFGARMITIDGKQIKLQIW 60

Query:    61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
             DTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL++WLEDARQH+N NM IML+GNK
Sbjct:    61 DTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNK 120

Query:   121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
              DL  RR V KEEGE FA+E+GL+F+E SA+TA NVEEAFI TA +I + IQEG  D  N
Sbjct:   121 SDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINN 180

Query:   181 DQSGIKVG--YGRGQGPSGARDGTVSQRGGCC 210
             + +GIK+G  +       G   G     GGCC
Sbjct:   181 EANGIKIGPQHAATNASHGGNQGGQQAGGGCC 212

GO:0000139 "Golgi membrane" evidence=IDA

GO:0003924 "GTPase activity" evidence=IEA;ISO;ISS

GO:0005525 "GTP binding" evidence=IEA;ISO;ISS;IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IEA;ISO

GO:0006184 "GTP catabolic process" evidence=ISO;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0019003 "GDP binding" evidence=IEA;ISO;ISS

GO:0032482 "Rab protein signal transduction" evidence=IC

GO:0033116 "endoplasmic reticulum-Golgi intermediate compartment membrane" evidence=IEA

GO:0042470 "melanosome" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IDA

UNIPROTKB|G1K288 RAB2A "Ras-related protein Rab-2A" [Canis lupus familiaris (taxid:9615)]

 Score = 803 (287.7 bits), Expect = 6.0e-80, P = 6.0e-80
 Identities = 154/212 (72%), Positives = 173/212 (81%)

Query:     1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
             M+Y YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TIDG+ IKLQIW
Sbjct:    21 MAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIW 80

Query:    61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
             DTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL++WLEDARQH+N NM IML+GNK
Sbjct:    81 DTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNK 140

Query:   121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
              DL  RR V KEEGE FA+E+GL+F+E SA+TA NVEEAFI TA +I + IQEG  D  N
Sbjct:   141 SDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINN 200

Query:   181 DQSGIKVG--YGRGQGPSGARDGTVSQRGGCC 210
             + +GIK+G  +           G     GGCC
Sbjct:   201 EANGIKIGPQHAATNATHAGNQGGQQAGGGCC 232

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|P61105 RAB2A "Ras-related protein Rab-2A" [Canis lupus familiaris (taxid:9615)]

 Score = 803 (287.7 bits), Expect = 6.0e-80, P = 6.0e-80
 Identities = 154/212 (72%), Positives = 173/212 (81%)

Query:     1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
             M+Y YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TIDG+ IKLQIW
Sbjct:     1 MAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIW 60

Query:    61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
             DTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL++WLEDARQH+N NM IML+GNK
Sbjct:    61 DTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNK 120

Query:   121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
              DL  RR V KEEGE FA+E+GL+F+E SA+TA NVEEAFI TA +I + IQEG  D  N
Sbjct:   121 SDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINN 180

Query:   181 DQSGIKVG--YGRGQGPSGARDGTVSQRGGCC 210
             + +GIK+G  +           G     GGCC
Sbjct:   181 EANGIKIGPQHAATNATHAGNQGGQQAGGGCC 212

GO:0005525 "GTP binding" evidence=ISS

GO:0019003 "GDP binding" evidence=ISS

GO:0003924 "GTPase activity" evidence=ISS

GO:0042470 "melanosome" evidence=IEA

GO:0033116 "endoplasmic reticulum-Golgi intermediate compartment membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|P61019 RAB2A "Ras-related protein Rab-2A" [Homo sapiens (taxid:9606)]

 Score = 803 (287.7 bits), Expect = 6.0e-80, P = 6.0e-80
 Identities = 154/212 (72%), Positives = 173/212 (81%)

Query:     1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
             M+Y YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TIDG+ IKLQIW
Sbjct:     1 MAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIW 60

Query:    61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
             DTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL++WLEDARQH+N NM IML+GNK
Sbjct:    61 DTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNK 120

Query:   121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
              DL  RR V KEEGE FA+E+GL+F+E SA+TA NVEEAFI TA +I + IQEG  D  N
Sbjct:   121 SDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINN 180

Query:   181 DQSGIKVG--YGRGQGPSGARDGTVSQRGGCC 210
             + +GIK+G  +           G     GGCC
Sbjct:   181 EANGIKIGPQHAATNATHAGNQGGQQAGGGCC 212

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0033116 "endoplasmic reticulum-Golgi intermediate compartment membrane" evidence=IEA

GO:0042470 "melanosome" evidence=IEA

GO:0019003 "GDP binding" evidence=IDA

GO:0005525 "GTP binding" evidence=IDA

GO:0003924 "GTPase activity" evidence=IDA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=TAS

GO:0006184 "GTP catabolic process" evidence=IDA;TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q05975	RAB2_LYMST	No assigned EC number	0.7978	0.8909	0.8867	N/A	no
O23561	RAB1A_ARATH	No assigned EC number	0.7109	0.9620	0.9902	no	no
P61105	RAB2A_CANFA	No assigned EC number	0.7925	0.8909	0.8867	yes	no
P49104	RAB2B_MAIZE	No assigned EC number	0.8526	0.9004	0.9047	N/A	no
P49103	RAB2A_MAIZE	No assigned EC number	0.8518	0.8957	0.9043	N/A	no
P92963	RAB1C_ARATH	No assigned EC number	0.8476	0.9952	0.9952	no	no
Q39570	YPTC4_CHLRE	No assigned EC number	0.7840	0.9952	0.9859	N/A	no
P53994	RAB2A_MOUSE	No assigned EC number	0.7311	0.9952	0.9905	yes	no
P05712	RAB2A_RAT	No assigned EC number	0.7872	0.8909	0.8867	yes	no
Q38922	RAB1B_ARATH	No assigned EC number	0.9	0.9952	0.9952	yes	no
Q01971	RAB2A_RABIT	No assigned EC number	0.7812	0.9099	0.9056	yes	no
Q90965	RAB2A_CHICK	No assigned EC number	0.7925	0.8909	0.8867	yes	no
Q4R4X6	RAB2A_MACFA	No assigned EC number	0.7925	0.8909	0.8867	N/A	no
Q5R6B6	RAB2A_PONAB	No assigned EC number	0.7925	0.8909	0.8867	yes	no
P61019	RAB2A_HUMAN	No assigned EC number	0.7925	0.8909	0.8867	yes	no
Q8WUD1	RAB2B_HUMAN	No assigned EC number	0.7129	0.9952	0.9722	no	no
P17610	YPT3_SCHPO	No assigned EC number	0.4855	0.9857	0.9719	yes	no
P36863	YPTV4_VOLCA	No assigned EC number	0.7887	0.9952	0.9859	N/A	no
P59279	RAB2B_MOUSE	No assigned EC number	0.7037	0.9952	0.9722	no	no
P36409	RAB2A_DICDI	No assigned EC number	0.7142	0.9620	0.9806	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	211
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	1e-153
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	1e-129
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	1e-103
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	3e-95
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	4e-93
pfam00071	162	pfam00071, Ras, Ras family	4e-92
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	3e-87
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	1e-81
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	3e-81
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	2e-77
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	7e-77
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	3e-72
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	1e-71
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	6e-71
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	2e-67
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	9e-63
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	2e-60
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	2e-59
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	2e-55
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	4e-55
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	1e-54
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	7e-52
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	2e-51
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	2e-51
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	1e-49
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	5e-49
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	1e-48
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	3e-48
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	5e-48
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	5e-47
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	1e-44
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	3e-44
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	1e-42
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	5e-42
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	1e-39
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	3e-39
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	3e-37
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	4e-37
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	1e-36
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	2e-36
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	3e-36
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	4e-36
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	1e-35
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	8e-35
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	1e-34
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	3e-34
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	1e-33
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	5e-33
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	1e-32
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	3e-32
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	7e-32
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	3e-31
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	3e-31
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	1e-30
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	2e-30
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	2e-30
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	2e-30
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	2e-28
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	7e-27
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	3e-26
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	1e-25
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	1e-25
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	2e-25
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	3e-25
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	2e-24
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	6e-24
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	4e-22
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	5e-22
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	9e-22
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	1e-21
pfam08477	116	pfam08477, Miro, Miro-like protein	1e-19
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	1e-19
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	2e-17
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	2e-17
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	2e-17
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	8e-17
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	5e-16
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	3e-15
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	3e-14
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	5e-14
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	1e-13
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	1e-13
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	2e-13
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	3e-13
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	2e-12
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	2e-12
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	7e-10
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	2e-09
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	2e-09
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	1e-08
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	3e-08
cd00879	191	cd00879, Sar1, Sar1 is an essential component of C	1e-06
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	2e-06
cd04102	204	cd04102, RabL3, Rab GTPase-like family 3 (Rab-like	2e-06
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	3e-06
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	4e-06
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	7e-06
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	8e-06
cd01881	167	cd01881, Obg_like, Obg-like family of GTPases cons	8e-06
COG0486	454	COG0486, ThdF, Predicted GTPase [General function	1e-05
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	2e-05
PLN00023	334	PLN00023, PLN00023, GTP-binding protein; Provision	3e-05
cd04162	164	cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp	7e-05
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	8e-05
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	1e-04
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	3e-04
cd04164	159	cd04164, trmE, trmE is a tRNA modification GTPase	3e-04
cd04154	173	cd04154, Arl2, Arf-like 2 (Arl2) GTPase	4e-04
cd00880	161	cd00880, Era_like, E	5e-04
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	6e-04
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	0.001

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score =  423 bits (1090), Expect = e-153
 Identities = 179/210 (85%), Positives = 191/210 (90%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MSY YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TID +PIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHAN NM+IML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
           CDLAHRRAVS EEGEQFAKE+GL+F+EASA+TAQNVEEAFIKTAAKI + IQ+G  D  N
Sbjct: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIYKKIQDGVFDVSN 180

Query: 181 DQSGIKVGYGRGQGPSGARDGTVSQRGGCC 210
           +  GIKVGYG   G SG RDGT SQ GGCC
Sbjct: 181 ESYGIKVGYGAIPGASGGRDGTSSQGGGCC 210

Length = 210

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  360 bits (925), Expect = e-129
 Identities = 141/168 (83%), Positives = 153/168 (91%)

Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           Y YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TIDG+ IKLQIWDT
Sbjct: 1   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 60

Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQH+N NM+IML+GNKCD
Sbjct: 61  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCD 120

Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           L  RR VS EEGE FA+E+GL+F+E SA+TA NVEEAFI TA +I   
Sbjct: 121 LESRREVSYEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYDK 168

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  295 bits (758), Expect = e-103
 Identities = 99/164 (60%), Positives = 127/164 (77%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK I+IGD+GVGKS LL +FTD +F   +  TIGV+F  + + +DG+ +KLQIWDTAGQE
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            FRSIT SYYRGA GALLVYDIT RE+F +L +WL++ R++A+PN+ IMLVGNK DL  +
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYASPNVVIMLVGNKSDLEEQ 120

Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           R VS+EE E FA+E+GL F E SA+T  NVEEAF + A +IL+ 
Sbjct: 121 RQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREILKR 164

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  274 bits (703), Expect = 3e-95
 Identities = 93/158 (58%), Positives = 121/158 (76%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK ++IGD+GVGK+ LLL+F D +F   +  TIGV+F ++ + +DG+ +KLQIWDTAGQE
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            FRSIT SYYRGA GA+LVYD+T RE+F +L  WL + +++A PN+ I+LVGNK DL   
Sbjct: 61  RFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAPPNIPIILVGNKSDLEDE 120

Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA 164
           R VS EE +QFAKENGLLF E SA+T +NV+EAF   A
Sbjct: 121 RQVSTEEAQQFAKENGLLFFETSAKTGENVDEAFESLA 158

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score =  269 bits (688), Expect = 4e-93
 Identities = 114/166 (68%), Positives = 135/166 (81%)

Query: 5   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG 64
           Y+FKYIIIGD GVGKSCLL QFT+K+F      TIGVEFG R++ ++G+ IKLQIWDTAG
Sbjct: 1   YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAG 60

Query: 65  QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124
           QE FR++TRSYYRGAAGAL+VYDITRR T+NHLSSWL DAR   NPN  I L+GNK DL 
Sbjct: 61  QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE 120

Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
            +R V+ EE +QFA ENGLLFLE SA+T +NVE+AF++TA KI QN
Sbjct: 121 AQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKIYQN 166

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  266 bits (682), Expect = 4e-92
 Identities = 89/162 (54%), Positives = 120/162 (74%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++GD GVGKS LL++FT  +F   +  TIGV+F  + + +DG+ +KLQIWDTAGQE 
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR 127
           FR++   YYRGA G LLVYDIT R++F ++  WLE+  +HA+ N+ I+LVGNKCDL  +R
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADENVPIVLVGNKCDLEDQR 120

Query: 128 AVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
            VS EEGE  AKE GL F+E SA+T +NVEEAF + A +IL+
Sbjct: 121 VVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREILK 162

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  254 bits (651), Expect = 3e-87
 Identities = 96/168 (57%), Positives = 119/168 (70%), Gaps = 4/168 (2%)

Query: 4   DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTA 63
           DYLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + IDG+ IK QIWDTA
Sbjct: 1   DYLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTA 60

Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 123
           GQE +R+IT +YYRGA GALLVYDIT++ TF ++  WL++ R HA+ N+ IMLVGNK DL
Sbjct: 61  GQERYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDHADSNIVIMLVGNKSDL 120

Query: 124 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNI 171
            H RAV  EE + FA++NGL F+E SA    NVEEAF     ++L  I
Sbjct: 121 RHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAF----KQLLTEI 164

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  239 bits (612), Expect = 1e-81
 Identities = 102/161 (63%), Positives = 126/161 (78%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK++IIG  G GKSCLL QF + +F+   + TIGVEFG+R+V + G+ +KLQIWDTAGQE
Sbjct: 1   FKFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQE 60

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            FRS+TRSYYRGAAGALLVYDIT RE+FN L++WL DAR  A+P++ I+LVGNK DL   
Sbjct: 61  RFRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLASPDIVIILVGNKKDLEDD 120

Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           R V+  E  +FA+ENGLLFLE SA T +NVEEAF+K A  I
Sbjct: 121 REVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARSI 161

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  239 bits (611), Expect = 3e-81
 Identities = 93/167 (55%), Positives = 124/167 (74%)

Query: 4   DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTA 63
           DYLFK ++IGD+GVGKSCLLL+F++  F P    TIG++F  R + +DG+ IKLQIWDTA
Sbjct: 1   DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTA 60

Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 123
           GQE FR+IT SYYRGA G +LVYDIT  ++F ++ +W+ +  +HA+ ++  MLVGNKCD+
Sbjct: 61  GQERFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHASEDVERMLVGNKCDM 120

Query: 124 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
             +R VSKEEGE  A+E G+ FLE SA+   NVEEAF+  A  IL+ 
Sbjct: 121 EEKRVVSKEEGEALAREYGIKFLETSAKANINVEEAFLTLAKDILKK 167

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  229 bits (586), Expect = 2e-77
 Identities = 87/166 (52%), Positives = 123/166 (74%)

Query: 5   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG 64
           YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R + +DG+ +KLQIWDTAG
Sbjct: 1   YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAG 60

Query: 65  QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124
           QE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N++ +LVGNKCDL 
Sbjct: 61  QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 120

Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
            ++ V   E ++FA E G+ FLE SA+ A NVEEAF+  A +I + 
Sbjct: 121 DKKVVDYTEAKEFADELGIPFLETSAKNATNVEEAFMTMAREIKKR 166

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score =  229 bits (586), Expect = 7e-77
 Identities = 102/210 (48%), Positives = 137/210 (65%), Gaps = 4/210 (1%)

Query: 5   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTI-DGRPIKLQIWDTA 63
           Y F+ I+IGD+ VGKS LL +FT+ RF  V D T+GV+F +R++ I  G  IKLQ+WDTA
Sbjct: 1   YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTA 60

Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPN-MSIMLVGNKCD 122
           GQE FRSITRSYYR + G LLV+DIT RE+F H+  WLE+AR H  P+    +LVG+KCD
Sbjct: 61  GQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCD 120

Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 182
           L  +R V++EE E+ AK+ G+ ++E SART  NVEEAF     +I + I+ G L A++  
Sbjct: 121 LESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYERIKRGELCALDGW 180

Query: 183 SGIKVGYGRGQ--GPSGARDGTVSQRGGCC 210
            G+K G+  G+            S    CC
Sbjct: 181 DGVKSGFPAGRAFSLEERSPTFASPEKSCC 210

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  215 bits (551), Expect = 3e-72
 Identities = 76/162 (46%), Positives = 108/162 (66%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++GD+ VGKS ++L+F    F    + TIG  F  + V +D   +K +IWDTAGQE
Sbjct: 2   FKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQE 61

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            +RS+   YYRGAA A++VYDIT  E+F    SW+++ ++H  PN+ I L GNK DL  +
Sbjct: 62  RYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPPNIVIALAGNKADLESK 121

Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 168
           R VS EE +++A ENGLLF+E SA+T +NV E F + A K+ 
Sbjct: 122 RQVSTEEAQEYADENGLLFMETSAKTGENVNELFTEIARKLP 163

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  214 bits (546), Expect = 1e-71
 Identities = 84/162 (51%), Positives = 119/162 (73%), Gaps = 2/162 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K ++IGD+GVGKS LLL+FTD  F      TIGV+F  + VT+DG+ +KL IWDTAGQE
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAH 125
            FR++T SYYRGA G +LVYD+TRR+TF++L +WL +   ++ NP+   MLVGNK D  +
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVKMLVGNKIDKEN 120

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
            R V++EEG++FA+++ +LF+E SA+T   V++AF +   KI
Sbjct: 121 -REVTREEGQKFARKHNMLFIETSAKTRIGVQQAFEELVEKI 161

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score =  214 bits (547), Expect = 6e-71
 Identities = 101/210 (48%), Positives = 139/210 (66%), Gaps = 4/210 (1%)

Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YDYLFK ++IGD+GVGKS +L +FT   F      TIGVEF  R + ++G+ +K QIWDT
Sbjct: 9   YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDT 68

Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE +R+IT +YYRGA GALLVYDIT+R+TF+++  WL + R HA+ N+ IM+ GNK D
Sbjct: 69  AGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSD 128

Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 182
           L H R+V++E+G+  A++ GL FLE SA  A NVE+AF     +I   I + AL A    
Sbjct: 129 LNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYHIISKKALAAQEAA 188

Query: 183 SGIKVGYGRGQGPS-GARDGTVSQRGGCCS 211
           +   +    GQG +    D + + + GCCS
Sbjct: 189 ANSGLP---GQGTTINVADTSGNNKRGCCS 215

Length = 216

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  203 bits (519), Expect = 2e-67
 Identities = 78/162 (48%), Positives = 110/162 (67%), Gaps = 1/162 (0%)

Query: 4   DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTA 63
           D+LFK I+IGD+ VGK+C++ +F    F      TIGV+F  + + I G+ +KLQIWDTA
Sbjct: 1   DFLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTA 60

Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 123
           GQE FR+IT+SYYR A GA++ YDITRR +F  +  W+E+  ++   N+ ++L+GNKCDL
Sbjct: 61  GQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDL 120

Query: 124 AHRRAVSKEEGEQFAKENGLLF-LEASARTAQNVEEAFIKTA 164
             +R V  EE    A+  G+L  LE SA+ + NVEEAF+  A
Sbjct: 121 EEQREVLFEEACTLAEHYGILAVLETSAKESSNVEEAFLLMA 162

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  191 bits (488), Expect = 9e-63
 Identities = 67/161 (41%), Positives = 107/161 (66%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K + +GD  VGK+ ++ +F    F   +  TIG++F ++ + +D + ++LQ+WDTAGQE
Sbjct: 1   HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQE 60

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            FRS+  SY R ++ A++VYDIT R++F++   W++D R     ++ I+LVGNK DL+ +
Sbjct: 61  RFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDK 120

Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           R VS EEGE+ AKEN  +F+E SA+   NV++ F K A  +
Sbjct: 121 RQVSTEEGEKKAKENNAMFIETSAKAGHNVKQLFKKIAQAL 161

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score =  186 bits (473), Expect = 2e-60
 Identities = 83/166 (50%), Positives = 112/166 (67%)

Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YD+LFK ++IG+ GVGK+CL+ +FT   F P    TIGV+F  + V I G  IKLQIWDT
Sbjct: 4   YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDT 63

Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE FRSIT+SYYR A   +L YDIT  E+F  L  WL +  Q+AN  +  +LVGNK D
Sbjct: 64  AGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKID 123

Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 168
           LA RR VS++  E+F+    + +LE SA+ + NVE+ F+  A +++
Sbjct: 124 LAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRLI 169

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  183 bits (467), Expect = 2e-59
 Identities = 71/172 (41%), Positives = 109/172 (63%), Gaps = 5/172 (2%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K II+GD+GVGK+ L+ Q+ +K+F   +  TIG +F  + VT+D R + LQIWDTAGQE
Sbjct: 1   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQE 60

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP----NMSIMLVGNKCD 122
            F+S+  ++YRGA   +LVYD+T  ++F  L SW ++    A+P    N   +++GNK D
Sbjct: 61  RFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVVLGNKID 120

Query: 123 LAHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKILQNIQE 173
           L  +R VS ++ +Q+ K  G + + E SA+ A NV++AF   A   L+  +E
Sbjct: 121 LEEKRQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFETIARLALEQEKE 172

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score =  175 bits (444), Expect = 2e-55
 Identities = 89/172 (51%), Positives = 117/172 (68%), Gaps = 7/172 (4%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL--TIGVEFGARMVTIDGRPIKLQI 59
            YD  FK ++IGD+GVGKS LL+ F       V DL  TIGV+F  + +T+ G+ +KL I
Sbjct: 10  GYDLSFKILLIGDSGVGKSSLLVSFIS---SSVEDLAPTIGVDFKIKQLTVGGKRLKLTI 66

Query: 60  WDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHA-NPNMSIMLV 117
           WDTAGQE FR++T SYYR A G +LVYD+TRRETF +LS  W ++   ++ N +   MLV
Sbjct: 67  WDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLV 126

Query: 118 GNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
           GNK D    R VS+EEG   AKE+G LFLE SA+T +NVE+ F + A KI++
Sbjct: 127 GNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIME 178

Length = 211

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score =  173 bits (440), Expect = 4e-55
 Identities = 76/162 (46%), Positives = 116/162 (71%), Gaps = 1/162 (0%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           FK +++GD+GVGK+CLL++F D  F       T+G++F  ++VT+DG  +KLQIWDTAGQ
Sbjct: 1   FKVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQ 60

Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125
           E FRS+T +YYR A   LL+YD+T + +F+++ +WL +  ++A  ++ IML+GNK D++ 
Sbjct: 61  ERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSDVVIMLLGNKADMSG 120

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
            R V +E+GE+ AKE G+ F+E SA+T  NVE AF   A ++
Sbjct: 121 ERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKEL 162

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score =  172 bits (438), Expect = 1e-54
 Identities = 79/166 (47%), Positives = 109/166 (65%), Gaps = 1/166 (0%)

Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YD+LFK +IIGD+GVGKS LLL+F D  F   +  TIGV+F  R V I+G  +KLQIWDT
Sbjct: 3   YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDT 62

Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE FR+IT +YYRG  G ++VYD+T  E+F ++  WL++  Q+ + ++  +LVGNK D
Sbjct: 63  AGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCD-DVCKVLVGNKND 121

Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 168
              R+ V  E+  +FA + G+   E SA+   NVEE F      +L
Sbjct: 122 DPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVL 167

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score =  164 bits (417), Expect = 7e-52
 Identities = 72/166 (43%), Positives = 100/166 (60%), Gaps = 5/166 (3%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK I+IGD+ VGK+CL  +F   RF    + TIGV+F  R V IDG  IK+Q+WDTAGQE
Sbjct: 3   FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQE 62

Query: 67  SFR-SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNM-SIMLVGNKCDLA 124
            FR S+ + YYR     + VYD+T   +F+ L SW+E+  QH+ PN    +LVGNKCDL 
Sbjct: 63  RFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLR 122

Query: 125 HRRAVSKEEGEQFAKENGLLFLEASAR---TAQNVEEAFIKTAAKI 167
            +  V  +  ++FA  + +   E SA+      +VE  F+  A K+
Sbjct: 123 EQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKL 168

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  163 bits (415), Expect = 2e-51
 Identities = 65/162 (40%), Positives = 103/162 (63%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++G+  VGK+ L+L++ + +F   H+ T    F  + V I G+ I L IWDTAGQE
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            + ++   YYR A GA+LVYDIT  ++F  +  W+++ +Q    N+S+++VGNK DL  +
Sbjct: 61  RYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQ 120

Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 168
           R VSK E E++AK  G    E SA+T + +EE F+  A +++
Sbjct: 121 RVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRMI 162

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score =  163 bits (414), Expect = 2e-51
 Identities = 71/164 (43%), Positives = 108/164 (65%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           F+ ++IGD+GVGK+CLL +FTD  F   H  TIGV+F  + + +DG  +++QIWDTAGQE
Sbjct: 1   FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            +++IT+ YYR A G  LVYDI+   ++ H+  W+ D  ++A   +  +L+GNK D   +
Sbjct: 61  RYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQK 120

Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           R V  E+G + AKE G+ F E SA T +N++E+F +    +LQ 
Sbjct: 121 RQVGDEQGNKLAKEYGMDFFETSACTNKNIKESFTRLTELVLQA 164

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score =  160 bits (405), Expect = 1e-49
 Identities = 75/163 (46%), Positives = 111/163 (68%), Gaps = 1/163 (0%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR 69
           IIIG  GVGK+ L+ +FTD  F      T+GV+F  + V + G+ I+LQIWDTAGQE F 
Sbjct: 4   IIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFN 63

Query: 70  SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV 129
           SIT +YYR A G +LVYDIT++ETF+ L  W++   ++A+ +  ++LVGNK D    R +
Sbjct: 64  SITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREI 123

Query: 130 SKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAKILQNI 171
           ++++GE+FA++  G+ F EASA+   NV+E F+K    IL+ +
Sbjct: 124 TRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 166

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  158 bits (401), Expect = 5e-49
 Identities = 68/187 (36%), Positives = 105/187 (56%), Gaps = 7/187 (3%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID-GRPIKLQIWDTAGQ 65
           FK ++IGD GVGK+ ++ ++    F   +  TIGV+F  +++  D    ++LQ+WD AGQ
Sbjct: 1   FKVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ 60

Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED--ARQHANPNMSI--MLVGNKC 121
           E F  +TR YY+GA GA++V+D+TR  TF  +  W  D  ++        I  +L+ NKC
Sbjct: 61  ERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPALLLANKC 120

Query: 122 DLAHRR-AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKILQNIQEGALDAV 179
           DL   R A   E+ +QF KENG + + E SA+   N+EEA       IL+N +       
Sbjct: 121 DLKKERLAKDPEQMDQFCKENGFIGWFETSAKENINIEEAMRFLVKNILKNDKGLQSPEP 180

Query: 180 NDQSGIK 186
           ++ + I 
Sbjct: 181 DEDNVID 187

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  155 bits (395), Expect = 1e-48
 Identities = 66/161 (40%), Positives = 91/161 (56%), Gaps = 2/161 (1%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++G  GVGKS L ++F    F   +D TI   +  + + +DG    L I DTAGQE 
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIEDSYRKQ-IVVDGETYTLDILDTAGQEE 59

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHR 126
           F ++   Y R   G +LVY IT RE+F  + +  E   R     ++ I+LVGNKCDL + 
Sbjct: 60  FSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKEDVPIVLVGNKCDLENE 119

Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           R VS EEGE  A+E G  FLE SA+T  N++E F     +I
Sbjct: 120 RQVSTEEGEALAEEWGCPFLETSAKTNINIDELFNTLVREI 160

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score =  155 bits (392), Expect = 3e-48
 Identities = 69/155 (44%), Positives = 99/155 (63%)

Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           +FK +IIG++ VGK+  L ++ D  F      T+G++F  + V  + + IKLQIWDTAGQ
Sbjct: 1   MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQ 60

Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125
           E +R+IT +YYRGA G +L+YDIT  E+FN +  W    + ++  N  ++LVGNKCD+  
Sbjct: 61  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMED 120

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
            R VS E G Q A + G  F EASA+   NV++ F
Sbjct: 121 ERVVSAERGRQLADQLGFEFFEASAKENINVKQVF 155

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score =  154 bits (392), Expect = 5e-48
 Identities = 69/170 (40%), Positives = 107/170 (62%), Gaps = 15/170 (8%)

Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEF-GARMVTIDGRP------- 54
           YDYL K + +GD+GVGK+  L ++TD +F P    T+G++F   R+V     P       
Sbjct: 1   YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKA 60

Query: 55  --IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA---N 109
             + LQ+WDTAGQE FRS+T +++R A G LL++D+T  ++F ++ +W+   + HA   N
Sbjct: 61  FRVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCEN 120

Query: 110 PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEA 159
           P+  I+L+GNK DL  +R VS+ +  + A + G+ + E SA T QNVE+A
Sbjct: 121 PD--IVLIGNKADLPDQREVSERQARELADKYGIPYFETSAATGQNVEKA 168

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score =  152 bits (385), Expect = 5e-47
 Identities = 54/158 (34%), Positives = 95/158 (60%), Gaps = 5/158 (3%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K I +G++GVGKSC++ ++ + RF   +  TIG+++G + V++  + +++  +D +G   
Sbjct: 2   KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE 61

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP-----NMSIMLVGNKCD 122
           +  +   +Y+   G LLVYD+T R++F  L SWL++ +Q   P     N+ +++  NK D
Sbjct: 62  YLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKID 121

Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
           L   RAVS++EG  +A+  G  + E SA T + V E F
Sbjct: 122 LTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMF 159

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  145 bits (369), Expect = 1e-44
 Identities = 66/155 (42%), Positives = 90/155 (58%), Gaps = 2/155 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +QF    F   +D TI  +   + + IDG    L I DTAGQE
Sbjct: 1   YKLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQE 59

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAH 125
            F ++   Y R   G LLVY IT R++F  +  + E   R     ++ I+LVGNKCDL  
Sbjct: 60  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLES 119

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
            R VS EEG++ A++ G  FLE SA+   NV+EAF
Sbjct: 120 ERVVSTEEGKELARQWGCPFLETSAKERVNVDEAF 154

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  145 bits (367), Expect = 3e-44
 Identities = 66/155 (42%), Positives = 92/155 (59%), Gaps = 2/155 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +QF    F   +D TI  +   + + IDG    L I DTAGQE
Sbjct: 3   YKLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQE 61

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAH 125
            F ++   Y R   G LLVY IT R++F  ++ + E   R     ++ I+LVGNKCDL +
Sbjct: 62  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDRDDVPIVLVGNKCDLEN 121

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
            R VS EEG++ A++ G  FLE SA+   NV+EAF
Sbjct: 122 ERVVSTEEGKELARQWGCPFLETSAKERINVDEAF 156

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  142 bits (360), Expect = 1e-42
 Identities = 69/176 (39%), Positives = 96/176 (54%), Gaps = 1/176 (0%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
            +   FK +++GD GVGK+ LL +     F   +  TIG    A+ +    R IKLQ+WD
Sbjct: 1   LFMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWD 60

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVGNK 120
           TAGQE +RS+   YYRGA G L+VYD T RE +      WLE+ R+ A  ++ I+LVGNK
Sbjct: 61  TAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNK 120

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGAL 176
            DL   ++ S+E   Q  +E  LL L   A   +    A ++T+AK L       L
Sbjct: 121 IDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNEL 176

Length = 219

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score =  140 bits (353), Expect = 5e-42
 Identities = 65/167 (38%), Positives = 106/167 (63%), Gaps = 1/167 (0%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           +YDYL K++++GD+ VGK  +L    D   +  +   +G+++    + +DGR +KLQ+WD
Sbjct: 2   AYDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWD 61

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           T+GQ  F +I RSY RGA G +LVYDIT R +F+ +  W+++  +HA P +  +LVGN+ 
Sbjct: 62  TSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRL 120

Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 168
            LA +R V+ E+ + +A+ NG+ F E S     N+ E+F + A  +L
Sbjct: 121 HLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIVL 167

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  133 bits (336), Expect = 1e-39
 Identities = 57/161 (35%), Positives = 86/161 (53%), Gaps = 3/161 (1%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRP--IKLQIWDTAGQ 65
           K I++G+  VGKS ++ +F    F   +  TIGV+F  + + +      ++L +WDTAGQ
Sbjct: 2   KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61

Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125
           E F +IT++YYRGA   +LV+  T RE+F  + SW E        ++ ++LV  K DL  
Sbjct: 62  EEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECG-DIPMVLVQTKIDLLD 120

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 166
           +  ++ EE E  AK   L     S +   NV E F   A K
Sbjct: 121 QAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAEK 161

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score =  132 bits (333), Expect = 3e-39
 Identities = 62/155 (40%), Positives = 92/155 (59%), Gaps = 2/155 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K I++G  GVGKS L LQF    F   ++ T    +  + V +DG  ++L I DTAGQE
Sbjct: 1   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQLNILDTAGQE 59

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAH 125
            + +I  +Y+R   G LLV+ IT  E+F  L+ + E   R   + N+ ++LVGNKCDL  
Sbjct: 60  DYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNKCDLED 119

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
           +R VS EE    A++ G+ ++E SA+T  NV++ F
Sbjct: 120 KRQVSVEEAANLAEQWGVNYVETSAKTRANVDKVF 154

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score =  127 bits (320), Expect = 3e-37
 Identities = 57/155 (36%), Positives = 91/155 (58%), Gaps = 2/155 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +QF    F   +D TI   +  +   IDG+  +L I DTAGQE
Sbjct: 3   YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWARLDILDTAGQE 61

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPN-MSIMLVGNKCDLAH 125
            F ++   Y R   G LLV+ +T R +F  +  +     +  + +   ++LVGNK DL H
Sbjct: 62  EFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEH 121

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
           +R VS+EEG++ A++  + ++E SA+   NV++AF
Sbjct: 122 QRQVSREEGQELARQLKIPYIETSAKDRVNVDKAF 156

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score =  127 bits (321), Expect = 4e-37
 Identities = 65/171 (38%), Positives = 96/171 (56%), Gaps = 4/171 (2%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++GD GVGK+ L +Q     F   +D TI   +  ++V +DG+P  L++ DTAGQE 
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVV-VDGQPCMLEVLDTAGQEE 59

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQ---HANPNMSIMLVGNKCDLA 124
           + ++   + R   G +LVY IT R TF  +  + E  ++    +  ++ IM+VGNKCD  
Sbjct: 60  YTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV 119

Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGA 175
           + R VS EEG   A+  G  F+EASA+T  NVE AF      + Q  Q G 
Sbjct: 120 YEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALRQQRQGGQ 170

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score =  125 bits (315), Expect = 1e-36
 Identities = 51/157 (32%), Positives = 76/157 (48%), Gaps = 4/157 (2%)

Query: 7   FKYIIIGDTGVGKSCLLLQFT-DKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
            K +I+GD  VGKS LL +   +K     +       +   ++  DG+  K  + DTAGQ
Sbjct: 2   IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 61

Query: 66  ESFRSITRSYYRGAAGALLVYDITRR--ETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 123
           E + +I R YYR    +L V+DI     +    L    ++   HA   + I+LVGNK DL
Sbjct: 62  EDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKIDL 121

Query: 124 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
              + +       FAK NG   +  SA T +N++ AF
Sbjct: 122 RDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAF 157

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score =  124 bits (314), Expect = 2e-36
 Identities = 61/160 (38%), Positives = 88/160 (55%), Gaps = 6/160 (3%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE- 66
           K  ++G +GVGKS L ++F  KRF   ++  +   + +R VTIDG  + L+I DT GQ+ 
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLY-SRQVTIDGEQVSLEIQDTPGQQQ 59

Query: 67  -SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA--NPNMSIMLVGNKCDL 123
                      R A G +LVY IT R +F+ +S  L+  R+    +  + ++LVGNK DL
Sbjct: 60  NEDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQLIREIKKRDGEIPVILVGNKADL 119

Query: 124 AHRRAVSKEEGEQFAKENGLLFLEASAR-TAQNVEEAFIK 162
            H R VS EEG++ A E G LF E SA      V+  F +
Sbjct: 120 LHSRQVSTEEGQKLALELGCLFFEVSAAENYLEVQNVFHE 159

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score =  124 bits (315), Expect = 3e-36
 Identities = 54/173 (31%), Positives = 93/173 (53%), Gaps = 16/173 (9%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++GD  VGK+CLL+ +T  +F   +  T+   + A  VT+DG+ + L +WDTAGQE 
Sbjct: 2   KIVVVGDGAVGKTCLLISYTTNKFPTEYVPTVFDNYSAN-VTVDGKQVNLGLWDTAGQEE 60

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKCDL--- 123
           +  +    Y      LL + +    +F ++ + W  + + +  PN+ I+LVG K DL   
Sbjct: 61  YDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHY-CPNVPIILVGTKIDLRDD 119

Query: 124 --------AHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKI 167
                     ++ ++ EEGE+ AKE G + ++E SA T + ++E F   A + 
Sbjct: 120 GNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVF-DEAIRA 171

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score =  124 bits (312), Expect = 4e-36
 Identities = 62/160 (38%), Positives = 97/160 (60%), Gaps = 6/160 (3%)

Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           L K I++GD GVGKS L+ ++   +F      TIGVEF  + + +DG  + LQIWDTAGQ
Sbjct: 5   LLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQ 64

Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKC 121
           E FRS+   +YRG+   LL + +   ++F +LS+W ++   +A+     +   +++GNK 
Sbjct: 65  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 124

Query: 122 DLAHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
           D+  R+ VS EE + + ++NG   + E SA+ A NV  AF
Sbjct: 125 DIPERQ-VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 163

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score =  123 bits (309), Expect = 1e-35
 Identities = 58/130 (44%), Positives = 86/130 (66%)

Query: 38  TIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL 97
           TIG++F ++ + +D  P++LQ+WDTAGQE FRS+  SY R +A A++VYDIT R++F + 
Sbjct: 12  TIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENT 71

Query: 98  SSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVE 157
           + W++D       ++ I LVGNK DL   R V+ EEG Q A+E   +F E SA+   N++
Sbjct: 72  TKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIK 131

Query: 158 EAFIKTAAKI 167
             F K AAK+
Sbjct: 132 VLFKKIAAKL 141

Length = 176

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score =  120 bits (303), Expect = 8e-35
 Identities = 62/162 (38%), Positives = 91/162 (56%), Gaps = 3/162 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +Q     F   +D TI   +  + V IDG    L I DTAGQE
Sbjct: 2   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 60

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVGNKCDLAH 125
            + ++   Y R   G L V+ I  R++F  + ++ E   R   + ++ ++LVGNKCDLA 
Sbjct: 61  EYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA 120

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           R  VS  +G+  AK  G+ ++E SA+T Q VEEAF     +I
Sbjct: 121 RT-VSTRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score =  121 bits (304), Expect = 1e-34
 Identities = 64/209 (30%), Positives = 99/209 (47%), Gaps = 23/209 (11%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRF--QPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           K +++G   VGK+ L+ ++   RF   P  + TIG  F A+ + +  R + L IWDTAG 
Sbjct: 2   KVVMLGKESVGKTSLVERYVHHRFLVGPYQN-TIGAAFVAKRMVVGERVVTLGIWDTAGS 60

Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125
           E + +++R YYRGA  A++ YD+T   +F     W+++ +     +  I L G K DL  
Sbjct: 61  ERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQN-LEEHCKIYLCGTKSDLIE 119

Query: 126 ----RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVND 181
                R V   + + FA E      E S++T QNV+E F        Q + E  +   N+
Sbjct: 120 QDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELF--------QKVAEDFVSRANN 171

Query: 182 QSGIKVGYGRGQGPSGARDGTVSQRGGCC 210
           Q   + G   GQ  +       S    CC
Sbjct: 172 QMNTEKGVDLGQKKN-------SYFYSCC 193

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score =  119 bits (299), Expect = 3e-34
 Identities = 56/163 (34%), Positives = 85/163 (52%), Gaps = 2/163 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +QF    F   +D TI  +F  + + +D  P  L+I DTAG E
Sbjct: 2   YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 60

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAH 125
            F S+   Y +   G ++VY +  ++TF  +    +   R      + I+LVGNK DL  
Sbjct: 61  QFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLES 120

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 168
            R VS  EG   A+E G  F+E SA++   V E F +   ++ 
Sbjct: 121 EREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQMN 163

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score =  118 bits (296), Expect = 1e-33
 Identities = 60/161 (37%), Positives = 91/161 (56%), Gaps = 3/161 (1%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K I++GD  VGK+CL+ +F    F   +  TIGV+F      + G P  LQ+WDTAGQE 
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP-NMSIMLVGNKCDLAHR 126
           F+ I  +YYRGA   ++V+D+T   +  H   WLEDA +  +P ++ + LVG K DL+  
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSP 121

Query: 127 RAVSKEEGE--QFAKENGLLFLEASARTAQNVEEAFIKTAA 165
              +  E +  + A+E    +   SA T +NV + F + A+
Sbjct: 122 AQYALMEQDAIKLAREMKAEYWAVSALTGENVRDFFFRVAS 162

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score =  116 bits (293), Expect = 5e-33
 Identities = 65/168 (38%), Positives = 93/168 (55%), Gaps = 2/168 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +QF    F   +D TI   +  +   ID     L I DTAGQE
Sbjct: 6   YKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQE 64

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVGNKCDLAH 125
            + ++   Y R   G L VY IT R +F  ++S+ E   R      + ++LVGNKCDL  
Sbjct: 65  EYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDS 124

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 173
            R VS  EG++ AK  G+ FLE SA+   NV+EAF +   +I + ++E
Sbjct: 125 ERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREIRKYLKE 172

Length = 189

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score =  115 bits (291), Expect = 1e-32
 Identities = 59/155 (38%), Positives = 89/155 (57%), Gaps = 4/155 (2%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K  ++G   VGKS L +QF +  F   +  TI   F ++++T  G+   L+I DTAGQ+ 
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIITYKGQEYHLEIVDTAGQDE 61

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA--RQHANPNMSIMLVGNKCDLAH 125
           +  + + Y  G  G +LVY +T R++F  +   + D         ++ I+LVGNK DL  
Sbjct: 62  YSILPQKYSIGIHGYILVYSVTSRKSFEVVKV-IYDKILDMLGKESVPIVLVGNKSDLHM 120

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
            R VS EEG++ A+  G  FLE+SA+  +NVEEAF
Sbjct: 121 ERQVSAEEGKKLAESWGAAFLESSAKENENVEEAF 155

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score =  115 bits (290), Expect = 3e-32
 Identities = 57/166 (34%), Positives = 91/166 (54%), Gaps = 4/166 (2%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGR-PIKLQIWDTAGQ 65
            K +++GD   GK+ L+ +F  + F   +  TIG++F +R +T+ G   + LQ+WD  GQ
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLE---DARQHANPNMSIMLVGNKCD 122
           +    +   Y  GA    LVYDIT  ++F +L  WL       + +     ++LVGNK D
Sbjct: 61  QIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKMVLVGNKTD 120

Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 168
           L H R V+ E+  +FA+EN +  +  SA+T   V   F + AA++L
Sbjct: 121 LEHNRQVTAEKHARFAQENDMESIFVSAKTGDRVFLCFQRIAAELL 166

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score =  113 bits (284), Expect = 7e-32
 Identities = 63/164 (38%), Positives = 90/164 (54%), Gaps = 3/164 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +QF    F   +D TI   +  + V IDGR   L+I DTAG E
Sbjct: 2   YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTE 60

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVGNKCDLAH 125
            F ++   Y +   G LLVY +T   + N L    E   R   + N+ ++LVGNK DL  
Sbjct: 61  QFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLED 120

Query: 126 RRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKIL 168
            R VS+E+G   +++ G + F E SAR   NV+E FI    +I+
Sbjct: 121 DRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQII 164

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score =  111 bits (280), Expect = 3e-31
 Identities = 63/162 (38%), Positives = 89/162 (54%), Gaps = 2/162 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +QF    F   +D TI   +  + V +DG+   L+I DTAG E
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTE 60

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAH 125
            F ++   Y +   G +LVY IT + TFN L    E   R     ++ ++LVGNKCDL  
Sbjct: 61  QFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 120

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
            R V KE+G+  A++ G  FLE SA+   NV E F     +I
Sbjct: 121 ERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQI 162

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score =  111 bits (281), Expect = 3e-31
 Identities = 53/172 (30%), Positives = 89/172 (51%), Gaps = 19/172 (11%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR 69
           +++GD  VGK+CLL+ +T   F   +  T+   + A  V +DG+P++L +WDTAGQE + 
Sbjct: 2   VVVGDGAVGKTCLLIVYTTNAFPEDYVPTVFENYSAD-VEVDGKPVELGLWDTAGQEDYD 60

Query: 70  SITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKCDLAHRRA 128
            +    Y      L+ + +    +F ++   W  + +    PN+ I+LVG K DL + ++
Sbjct: 61  RLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFC-PNVPIILVGTKLDLRNDKS 119

Query: 129 ------------VSKEEGEQFAKENGLL-FLEASARTAQNVEEAF---IKTA 164
                       V+ E+G+  AK  G + +LE SA T + V E F   I+ A
Sbjct: 120 TLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVFEEAIRAA 171

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score =  109 bits (275), Expect = 1e-30
 Identities = 54/162 (33%), Positives = 86/162 (53%), Gaps = 7/162 (4%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K I++GD+ VGKS L+ +F    ++P    T  +         +G+ I +  WDTAGQE 
Sbjct: 2   KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQER 61

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR 127
           F+++  SYY  A   +LV+D+TR+ T+ +LS W E+ R++  P +  ++V NK DL    
Sbjct: 62  FQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREY-RPEIPCIVVANKIDLDPSV 120

Query: 128 AVSKEEGEQFAKENGLLFLEASARTAQNVEEAF---IKTAAK 166
               ++   FA+++ L     SA    NV + F   IK A  
Sbjct: 121 T---QKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAVS 159

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score =  109 bits (275), Expect = 2e-30
 Identities = 51/165 (30%), Positives = 86/165 (52%), Gaps = 3/165 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++GD G GK+  + +     F+  +  T+GVE        +   I+  +WDTAGQE
Sbjct: 1   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQE 60

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            F  +   YY     A++++D+T R T+ ++ +W  D       N+ I+L GNK D+  R
Sbjct: 61  KFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 119

Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNI 171
           +   K +   F ++  L + E SA++  N E+ F+  A K+L N 
Sbjct: 120 K--VKPKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLGNP 162

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score =  109 bits (274), Expect = 2e-30
 Identities = 62/163 (38%), Positives = 91/163 (55%), Gaps = 3/163 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +QF    F   +D TI  +   + + +D +   L+I DTAG E
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIE-DSYRKQIEVDCQQCMLEILDTAGTE 60

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVGNKCDLAH 125
            F ++   Y +   G  LVY IT +++FN L    E   R     ++ ++LVGNKCDL  
Sbjct: 61  QFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 120

Query: 126 RRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKI 167
            R VSKEEG+  A++ G   FLE SA++  NV+E F     +I
Sbjct: 121 ERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDLVRQI 163

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score =  109 bits (274), Expect = 2e-30
 Identities = 53/163 (32%), Positives = 83/163 (50%), Gaps = 5/163 (3%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDK--RFQPVHDLTIGVEFGARMVTI--DGRPIKLQIWDTA 63
           +  ++GD  VGKS L+  F      FQ  + +T G +   + V +      ++L I+D+A
Sbjct: 2   QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDSA 61

Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSI-MLVGNKCD 122
           GQE F  +  + +   A   +VYD+T   +FN+ S W+   R H++   +  +LVGNKCD
Sbjct: 62  GQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRTHSHGLHTPGVLVGNKCD 121

Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA 165
           L  RR V   + +  A+ N L F E SA+     E  F+  A 
Sbjct: 122 LTDRREVDAAQAQALAQANTLKFYETSAKEGVGYEAPFLSLAR 164

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score =  104 bits (261), Expect = 2e-28
 Identities = 58/171 (33%), Positives = 85/171 (49%), Gaps = 2/171 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS + +QF    F   HD TI   +  +   ID  P  L I DTAGQ 
Sbjct: 3   YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQAR-IDNEPALLDILDTAGQA 61

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLE-DARQHANPNMSIMLVGNKCDLAH 125
            F ++   Y R   G ++ Y +T R +F   S + E   R     ++ ++LVGNK DL  
Sbjct: 62  EFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKELITRVRLTEDIPLVLVGNKVDLEQ 121

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGAL 176
           +R V+ EEG   A+E    F E SA     +++AF     +I +     AL
Sbjct: 122 QRQVTTEEGRNLAREFNCPFFETSAALRFYIDDAFHGLVREIRRKESMPAL 172

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score =  100 bits (250), Expect = 7e-27
 Identities = 52/160 (32%), Positives = 71/160 (44%), Gaps = 15/160 (9%)

Query: 11  IIGDTGVGKSCLLLQFTDKRFQPVHDL---TIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           ++G  GVGKS LL          V D+   T   +    +  +D   +KL + DT G + 
Sbjct: 2   VVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVY--VKELDKGKVKLVLVDTPGLDE 59

Query: 68  F-----RSITRSYYRGAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGNKC 121
           F       + R   RGA   LLV D T RE+  +     L   R+   P   I+LVGNK 
Sbjct: 60  FGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKEGIP---IILVGNKI 116

Query: 122 DL-AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
           DL   R        E+ AK  G+   E SA+T + V+E F
Sbjct: 117 DLLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELF 156

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score =  100 bits (250), Expect = 3e-26
 Identities = 51/164 (31%), Positives = 87/164 (53%), Gaps = 3/164 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK I++GD GVGK+  + +     F+  +  T+GVE        +  PI   +WDTAGQE
Sbjct: 10  FKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQE 69

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            F  +   YY     A++++D+T R T+ ++ +W  D  +    N+ I+LVGNK D+  R
Sbjct: 70  KFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCE-NIPIVLVGNKVDVKDR 128

Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           +   K     F ++  L + + SA++  N E+ F+  A ++  +
Sbjct: 129 QV--KARQITFHRKKNLQYYDISAKSNYNFEKPFLWLARRLTND 170

Length = 215

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 99.0 bits (247), Expect = 1e-25
 Identities = 51/158 (32%), Positives = 77/158 (48%), Gaps = 7/158 (4%)

Query: 7   FKYIIIGDTGVGKSCLLLQF-TDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           ++ +++GD+GVGKS L   F         ++   G +   R V++DG    L ++D   Q
Sbjct: 1   YRVVLLGDSGVGKSSLANIFTAGVYEDSAYEA-SGDDTYERTVSVDGEEATLVVYDHWEQ 59

Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETF---NHLSSWLEDARQHANPNMSIMLVGNKCD 122
           E    +  S  +     ++VY +T R +F   + L   L  ARQ    ++ I+LVGNK D
Sbjct: 60  EDGMWLEDSCMQVGDAYVIVYSVTDRSSFEKASELRIQLRRARQA--EDIPIILVGNKSD 117

Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
           L   R VS +EG   A      F+E SA    NV+E F
Sbjct: 118 LVRSREVSVQEGRACAVVFDCKFIETSAALQHNVDELF 155

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 97.2 bits (242), Expect = 1e-25
 Identities = 54/158 (34%), Positives = 82/158 (51%), Gaps = 6/158 (3%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           ++ ++ G  GVGKS L+L+F    F+  +  TI   +  ++++       LQI DT G  
Sbjct: 2   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKSICTLQITDTTGSH 60

Query: 67  SFRSITR-SYYRGAAGALLVYDITRRETFNHLSSWLEDARQ---HANPNMSIMLVGNKCD 122
            F ++ R S  +G A  +LVY IT +++   L    E   +   +    + IMLVGNKCD
Sbjct: 61  QFPAMQRLSISKGHA-FILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVGNKCD 119

Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
            +  R VS  EG   A+     F+E SA+T  NV+E F
Sbjct: 120 ESPSREVSSSEGAALARTWNCAFMETSAKTNHNVQELF 157

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 97.9 bits (244), Expect = 2e-25
 Identities = 51/164 (31%), Positives = 87/164 (53%), Gaps = 3/164 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +I+GD G GK+  + +     F+  ++ TIGVE        +   I+   WDTAGQE
Sbjct: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            F  +   YY     A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+ +R
Sbjct: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNR 132

Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           +   K +   F ++  L + E SA++  N E+ F+  A K+  +
Sbjct: 133 QV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 174

Length = 219

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 97.0 bits (242), Expect = 3e-25
 Identities = 54/184 (29%), Positives = 86/184 (46%), Gaps = 22/184 (11%)

Query: 4   DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTI---DGRPIKLQIW 60
           D   K +++GD G GK+CLL+ +    F   +  T+   F   + T+   +G+ I+L +W
Sbjct: 1   DLKVKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTV---FENYVTTLQVPNGKIIELALW 57

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGN 119
           DTAGQE +  +    Y      L+ Y +    +  N    W  +   H  P   I+LVG 
Sbjct: 58  DTAGQEDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEVN-HFCPGTPIVLVGL 116

Query: 120 KCDL-AHRRAVSK-----------EEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAK 166
           K DL   + +VSK           E+GE  AK    + ++E SA+  +NV+E F   A  
Sbjct: 117 KTDLRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVF-DAAIN 175

Query: 167 ILQN 170
           +  +
Sbjct: 176 VALS 179

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 94.0 bits (234), Expect = 2e-24
 Identities = 49/167 (29%), Positives = 85/167 (50%), Gaps = 16/167 (9%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++GD  VGK+ L++ +T   +   +  T    F    V +DG+P++LQ+ DTAGQ+ 
Sbjct: 2   KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVV-VLVDGKPVRLQLCDTAGQDE 60

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKCDL--- 123
           F  +    Y      LL + +    +F ++S  W+ + R+H NP   I+LVG + DL   
Sbjct: 61  FDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKH-NPKAPIILVGTQADLRTD 119

Query: 124 ---------AHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
                       + VS+   +  A++ G   ++E SA T +N++E F
Sbjct: 120 VNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVF 166

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 93.0 bits (231), Expect = 6e-24
 Identities = 56/172 (32%), Positives = 91/172 (52%), Gaps = 15/172 (8%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K + +GD  VGK+C+L+ +T   F   +  T+   F A  V +DG  + L +WDTAGQE 
Sbjct: 3   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSAN-VVVDGNTVNLGLWDTAGQED 61

Query: 68  FRSITRSYYRGAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
           +  +    YRGA   LL + +  + ++ N L  W+ + R +A P + I+LVG K DL   
Sbjct: 62  YNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELRHYA-PGVPIVLVGTKLDLRDD 120

Query: 127 R----------AVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKI 167
           +           ++  +GE+  K+ G   ++E S++T QNV+  F   A K+
Sbjct: 121 KQFFADHPGAVPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF-DAAIKV 171

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 88.9 bits (220), Expect = 4e-22
 Identities = 50/170 (29%), Positives = 91/170 (53%), Gaps = 5/170 (2%)

Query: 12  IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI 71
           +GD G GK+  + +     F+  +  T+GVE    +   +  PI+  +WDTAGQE F  +
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60

Query: 72  TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK 131
              YY     A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R+  +K
Sbjct: 61  RDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKDRKVKAK 119

Query: 132 EEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL--QNIQEGALDAV 179
                F ++  L + + SA++  N E+ F+  A K++   N++  A+ A+
Sbjct: 120 S--ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL 167

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 87.9 bits (218), Expect = 5e-22
 Identities = 50/167 (29%), Positives = 84/167 (50%), Gaps = 16/167 (9%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +DG+P+ L +WDTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQED 61

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKCD---- 122
           +  +    Y      L+ + +    +F ++ + W  + R H  PN  I+LVG K D    
Sbjct: 62  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 120

Query: 123 ------LAHRR--AVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
                 L  ++   ++  +G   AKE   + +LE SA T + ++  F
Sbjct: 121 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 167

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 87.6 bits (217), Expect = 9e-22
 Identities = 56/171 (32%), Positives = 83/171 (48%), Gaps = 12/171 (7%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++GD   GK+ LL  FT   F  V++ T+  E     + +DG  ++L +WDTAGQE 
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTV-FENYIHDIFVDGLAVELSLWDTAGQEE 60

Query: 68  FRSITRSYYRGAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGNKCDL--- 123
           F  +    Y      +L + +   ++  N  S WL + R H  P + ++LV  KCDL   
Sbjct: 61  FDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHHC-PGVKLVLVALKCDLREP 119

Query: 124 -----AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAKIL 168
                     +S EEG   AK  N   +LE SA+  + V EAF + A   L
Sbjct: 120 RNERDRGTHTISYEEGLAVAKRINACRYLECSAKLNRGVNEAFTEAARVAL 170

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 87.1 bits (216), Expect = 1e-21
 Identities = 53/168 (31%), Positives = 85/168 (50%), Gaps = 16/168 (9%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+ F+  +F  V+  T+   + A  + +DG+ ++L +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 61

Query: 68  FRSITRSYYRGAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGNKCDLAH- 125
           +  +    Y      L+ + I   ++  N    W  + + H  PN+ I+LVGNK DL + 
Sbjct: 62  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 120

Query: 126 -----------RRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFI 161
                      +  V  EEG   A++     +LE SA+T + V E F 
Sbjct: 121 EHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVFE 168

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 80.1 bits (198), Expect = 1e-19
 Identities = 41/117 (35%), Positives = 57/117 (48%), Gaps = 4/117 (3%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K ++IGD G GKS LL Q     F P      G       + +DG    L IWD  G+E 
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSS---WLEDARQHANPNMSIMLVGNKC 121
            +     + + A   LLVYD+T RE+ N +S    WL + R+     + ++LVGNK 
Sbjct: 61  LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRK-LGGKIPVILVGNKL 116

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 83.0 bits (205), Expect = 1e-19
 Identities = 53/186 (28%), Positives = 81/186 (43%), Gaps = 38/186 (20%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++GD  VGK+ LL ++ ++RF+     T+G  F  +       P  + IWDTAG+E 
Sbjct: 2   KVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLK----QWGPYNISIWDTAGREQ 56

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-- 125
           F  +   Y RGAA  +L YD++  ++   L          AN +    +VGNK DL    
Sbjct: 57  FHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEG 116

Query: 126 -----------------RRAVSKEEGEQFAKE----NGL----------LFLEASARTAQ 154
                            +R V+ E+ + F K       L          +  E SA+T  
Sbjct: 117 ALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGY 176

Query: 155 NVEEAF 160
           NV+E F
Sbjct: 177 NVDELF 182

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 75.9 bits (187), Expect = 2e-17
 Identities = 51/168 (30%), Positives = 87/168 (51%), Gaps = 17/168 (10%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++GD+  GK+ LL  F    F   +  T+   + A    +D + I+L +WDT+G   
Sbjct: 3   KIVLVGDSQCGKTALLQVFAKDSFPENYVPTVFENYTAS-FEVDKQRIELSLWDTSGSPY 61

Query: 68  FRSITRSYYRGAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGNKCD---- 122
           + ++    Y  +   L+ +DI+R ET  + L  W  + R+   PN  ++LVG K D    
Sbjct: 62  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFC-PNTPVLLVGCKSDLRTD 120

Query: 123 ------LAHRRA--VSKEEGEQFAKENG-LLFLEASARTAQN-VEEAF 160
                 L+++R   VS E+G   AK+ G   ++E SA+T++N V + F
Sbjct: 121 LSTLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAKTSENSVRDVF 168

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 76.2 bits (187), Expect = 2e-17
 Identities = 50/175 (28%), Positives = 82/175 (46%), Gaps = 16/175 (9%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++GD  VGK+CLL+ +T   F   +  T+   + A+   +DGR + L +WDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQT-AVDGRTVSLNLWDTAGQEE 63

Query: 68  FRSITRSYYRGAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
           +  +    Y      ++ + I    ++ N    W  +   H  PN+ I+LVG K DL + 
Sbjct: 64  YDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRND 122

Query: 127 RAVSK------------EEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKIL 168
               K            ++G   AK+   + +LE SA     V+E F +    +L
Sbjct: 123 ADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVL 177

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 75.9 bits (187), Expect = 2e-17
 Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 1/116 (0%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K  ++GD  +GK+ L++++ +  F   +  T+GV F  + ++I G  I   IWD  GQ  
Sbjct: 2   KIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQRE 61

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 123
           F ++     + A   L ++D+TR+ T N +  W   AR      + I LVG K DL
Sbjct: 62  FINMLPLVCKDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPI-LVGTKYDL 116

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 74.5 bits (183), Expect = 8e-17
 Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 14/165 (8%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +I+GD   GK+ LL  FT   F   +  T+   +      +DG+P++L +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVTD-CRVDGKPVQLALWDTAGQEE 61

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKCDL--- 123
           +  +    Y  A   L+ + I   ++  ++ + W+E+ R++  PN+ ++LVG K DL   
Sbjct: 62  YERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQE 120

Query: 124 -------AHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
                  A    V  ++ +  A+  G   ++E SA T + V++ F
Sbjct: 121 AVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVF 165

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 72.2 bits (177), Expect = 5e-16
 Identities = 45/167 (26%), Positives = 80/167 (47%), Gaps = 16/167 (9%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++GD  VGK+CLL+ +T  +F   +  T+   + A  V I G P  L ++DTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQED 61

Query: 68  FRSITRSYYRGAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGNKCDL--- 123
           +  +    Y      L+ + +    +F N    W+ +   H  P    +LVG + DL   
Sbjct: 62  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 120

Query: 124 ---------AHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
                      ++ ++ E GE+ A++   + ++E SA T + ++  F
Sbjct: 121 PSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVF 167

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 69.7 bits (171), Expect = 3e-15
 Identities = 37/160 (23%), Positives = 69/160 (43%), Gaps = 18/160 (11%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGA-RMVTIDGRPIKLQIWDTAGQE 66
           K +++G  GVGK+ L  Q   ++F      T G+     ++   + + I+L +WD  GQE
Sbjct: 3   KLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFGGQE 62

Query: 67  SFRSI------TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
            + +       +RS Y      LLV+D+   +  + +  WL   +        ++LVG  
Sbjct: 63  IYHATHQFFLTSRSLY------LLVFDLRTGDEVSRVPYWLRQIKAFG-GVSPVILVGTH 115

Query: 121 CDLAHRRAVSKEE-GEQF-AKENGLLFLEASARTAQNVEE 158
            D +    + K+   ++F A  N       S +  + + E
Sbjct: 116 IDESCDEDILKKALNKKFPAIIND--IHFVSCKNGKGIAE 153

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 67.3 bits (164), Expect = 3e-14
 Identities = 44/168 (26%), Positives = 86/168 (51%), Gaps = 16/168 (9%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ + +  F   +  T+   + A  VT+ G+   L ++DTAGQE
Sbjct: 1   LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQE 59

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ + +++A PN+  +L+G + DL  
Sbjct: 60  DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPYLLIGTQIDLRD 118

Query: 124 ----------AHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAF 160
                        + ++ E+G++ AKE G   ++E SA T + ++  F
Sbjct: 119 DPKTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSALTQKGLKTVF 166

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 66.4 bits (163), Expect = 5e-14
 Identities = 37/162 (22%), Positives = 65/162 (40%), Gaps = 23/162 (14%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIG--VEFGARMVTIDGRPIKLQIWDTAGQES 67
           +++G  G GK+ +L +            TIG  VE      T++ + +K  +WD  GQ+ 
Sbjct: 3   LMLGLDGAGKTTILYKLKLGEVVTTIP-TIGFNVE------TVEYKNVKFTVWDVGGQDK 55

Query: 68  FRSITRSYYRGAAGALLVYDITRR----ETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 123
            R + + YY    G + V D + R    E  N L   L +          ++++ NK DL
Sbjct: 56  IRPLWKHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEE---LKGAPLLILANKQDL 112

Query: 124 AHRRAVSKEEGEQFAKENGLL-----FLEASARTAQNVEEAF 160
               A+++ E  +      +          SA T   ++E  
Sbjct: 113 PG--ALTESELIELLGLESIKGRRWHIQPCSAVTGDGLDEGL 152

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 66.4 bits (162), Expect = 1e-13
 Identities = 44/157 (28%), Positives = 76/157 (48%), Gaps = 7/157 (4%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           + + +G  GVGK+ L+ +F    F+P H  T+  E  ++   + G  + + I DT+G  S
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVE-ELHSKEYEVAGVKVTIDILDTSGSYS 59

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQ-HANPNMSIMLVGNKCDLAHR 126
           F ++ +   +      LVY +   E+F  +    E+  +   +  + I++VGNK D    
Sbjct: 60  FPAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDKFVPIVVVGNKIDSLAE 119

Query: 127 RAVSKEEGEQFAK---ENGLLFLEASARTAQNVEEAF 160
           R V   +     +    NG  F+EASA+  +NV E F
Sbjct: 120 RQVEAADALSTVELDWNNG--FVEASAKDNENVTEVF 154

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 66.6 bits (162), Expect = 1e-13
 Identities = 50/175 (28%), Positives = 87/175 (49%), Gaps = 16/175 (9%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++GDT  GK+ LL  F    +   +  T+   + A    ID   I+L +WDT+G   
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTVFENYTASF-EIDKHRIELNMWDTSGSSY 61

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK----CDL 123
           + ++    Y  +   L+ +DI+R ET + +    +   Q   PN  ++LVG K     DL
Sbjct: 62  YDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKLVLVGCKLDMRTDL 121

Query: 124 AHRRAVSK--------EEGEQFAKENGLL-FLEASARTAQN-VEEAF-IKTAAKI 167
           +  R +SK        E+G   A++ G + ++E S+R ++N V + F + T A +
Sbjct: 122 STLRELSKQRLIPVTHEQGSLLARQLGAVAYVECSSRMSENSVRDVFHVTTLASV 176

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 65.5 bits (159), Expect = 2e-13
 Identities = 48/162 (29%), Positives = 81/162 (50%), Gaps = 16/162 (9%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++GD+  GK+ LL  F    F   +  T+   + A    ID + I+L +WDT+G   
Sbjct: 7   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF-EIDTQRIELSLWDTSGSPY 65

Query: 68  FRSITRSYYRGAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGNKCDLA-- 124
           + ++    Y  +   L+ +DI+R ET  + L  W  + ++   PN  ++LVG K DL   
Sbjct: 66  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTD 124

Query: 125 ---------HRRA-VSKEEGEQFAKENGLL-FLEASARTAQN 155
                    HR+  VS ++G   AK+ G   ++E SA  ++N
Sbjct: 125 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 166

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 65.9 bits (161), Expect = 3e-13
 Identities = 41/164 (25%), Positives = 78/164 (47%), Gaps = 11/164 (6%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           ++ +++G + VGK+ ++ +F   RF+  +  TI  +F  ++ +I G   +L I DT+G  
Sbjct: 1   YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNH 59

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQ---------HANPNMSIMLV 117
            F ++ R         +LV+ +  RE+F  +    E   +           N  + +++ 
Sbjct: 60  PFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVIC 119

Query: 118 GNKCDLAHRRAVSKEEGEQF-AKENGLLFLEASARTAQNVEEAF 160
           GNK D    R V ++E EQ    +    + E SA+   N++E F
Sbjct: 120 GNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMF 163

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 63.9 bits (155), Expect = 2e-12
 Identities = 46/177 (25%), Positives = 87/177 (49%), Gaps = 16/177 (9%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++GD   GK+ +L       +   +  T+   + A + T + R ++L +WDT+G   
Sbjct: 15  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQR-VELSLWDTSGSPY 73

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNH-LSSWLEDARQHANPNMSIMLVGNKCD---- 122
           + ++    Y  +   LL +DI+R E F+  L  W  +   +  P+  I+L+G K D    
Sbjct: 74  YDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYC-PSTRILLIGCKTDLRTD 132

Query: 123 ------LAHRRA--VSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKILQN 170
                 L++++   +S E+G   AK+ G   +LE SA T++    +  +TA+ +  N
Sbjct: 133 LSTLMELSNQKQAPISYEQGCAMAKQLGAEAYLECSAFTSEKSIHSIFRTASLLCIN 189

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 62.4 bits (152), Expect = 2e-12
 Identities = 49/168 (29%), Positives = 73/168 (43%), Gaps = 32/168 (19%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRF----QPV-HDLTIGVEFGARMVTIDGRPIKLQIWDTAG 64
           ++IGD GVGKS L++    + F      V  ++TI  +     VT +  P    I DT+ 
Sbjct: 6   VLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPAD-----VTPERVPTT--IVDTSS 58

Query: 65  QESFRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKCDL 123
           +   R+   +  R A    LVY + R  T   + + WL   R+     + I+LVGNK DL
Sbjct: 59  RPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNKSDL 117

Query: 124 AHRRAVSKEEGEQFAKENGLLF-----------LEASARTAQNVEEAF 160
                  ++   Q   E  +L            +E SA+T  NV E F
Sbjct: 118 -------RDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVF 158

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 55.4 bits (134), Expect = 7e-10
 Identities = 48/164 (29%), Positives = 69/164 (42%), Gaps = 19/164 (11%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDL--------TIGVEFGARMVTIDGRPIKLQIWD 61
           +I+G    GK+  L Q T  +F   +          T+G+  G    TI+    +L  WD
Sbjct: 3   LILGLDNAGKTTFLEQ-TKTKFSKNYKGLNPSKITPTVGLNIG----TIEVGKARLMFWD 57

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVGNK 120
             GQE  RS+   YY  + G + V D T RE FN   S  E      A   + ++++ NK
Sbjct: 58  LGGQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNEALEGVPLLVLANK 117

Query: 121 CDLAHRRAVS--KEEGEQFAKENG---LLFLEASARTAQNVEEA 159
            DL    +V+  KE  +      G    L    SA   + VEE 
Sbjct: 118 QDLPDALSVAEIKEVFDDCIALIGRRDCLVQPVSALEGEGVEEG 161

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 54.9 bits (132), Expect = 2e-09
 Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 18/137 (13%)

Query: 11  IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD--------- 61
           ++G  GVGK+ ++ QF  + F   +  T         V + GR   L I D         
Sbjct: 5   VLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPG 64

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNH---LSSWLEDARQHANPNMSIMLVG 118
           TAGQE      R   R +   +LVYDI   ++F++   L   + + R   N    I++VG
Sbjct: 65  TAGQEWMDPRFRG-LRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVG 123

Query: 119 NKCDL-----AHRRAVS 130
           NK D      A R  +S
Sbjct: 124 NKRDQQRHRFAPRHVLS 140

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 54.3 bits (131), Expect = 2e-09
 Identities = 36/118 (30%), Positives = 52/118 (44%), Gaps = 6/118 (5%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K II+G    GK+ +L QF          +      G+ +  I  + I+  +WD  GQE
Sbjct: 16  YKVIIVGLDNAGKTTILYQFLLG-----EVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQE 70

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLV-GNKCDL 123
           S RS   +YY      +LV D T RE        L     H +   +++LV  NK DL
Sbjct: 71  SLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDL 128

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score = 52.3 bits (125), Expect = 1e-08
 Identities = 45/191 (23%), Positives = 73/191 (38%), Gaps = 40/191 (20%)

Query: 6   LFKYIIIGDTGVGKSCLLL------QFTDKRFQPVHDLTI----------GVEFGARMVT 49
             K +++GD  VGK+ L+         T  +    H  T+           V   +R V 
Sbjct: 2   TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDV- 60

Query: 50  IDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHA 108
           +DG  + L++WDT G        R  Y  +   LL + I    +  ++ + W  + R   
Sbjct: 61  VDGVSVSLRLWDTFGDHD--KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC 118

Query: 109 NPNMSIMLVGNKCDLAH-------------------RRAVSKEEGEQFAKENGLLFLEAS 149
            P + ++LVG K DL +                      +  E G   AKE G+ + E S
Sbjct: 119 -PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYETS 177

Query: 150 ARTAQNVEEAF 160
             T   V++ F
Sbjct: 178 VVTQFGVKDVF 188

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 51.1 bits (123), Expect = 3e-08
 Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 14/131 (10%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            + +I+G    GK+ +L +            TIG  F    VT     +K  +WD  GQE
Sbjct: 15  MRILILGLDNAGKTTILYKLKLGEIV-TTIPTIG--FNVETVTYKN--VKFTVWDVGGQE 69

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFN----HLSSWLEDARQHANPNMSIMLVGNKCD 122
           S R + R+Y+      + V D   R+        L + L +       +  ++++ NK D
Sbjct: 70  SLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEE---LADAPLLILANKQD 126

Query: 123 LAHRRAVSKEE 133
           L    A+S+ E
Sbjct: 127 L--PGAMSEAE 135

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 38/138 (27%), Positives = 54/138 (39%), Gaps = 30/138 (21%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKR---FQPVH-----DLTIGVEFGARMVTIDGRPIKLQI 59
           K + +G    GK+ LL    D R     P       +LTIG              +K   
Sbjct: 21  KIVFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIG-------------NVKFTT 67

Query: 60  WDTAGQESFRSITRSYYRGAAGALLVYDITRRETF----NHLSSWLEDARQHANPNMSIM 115
           +D  G E  R + + Y+    G + + D    E F      L S L D       N+ I+
Sbjct: 68  FDLGGHEQARRVWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLND---EELANVPIL 124

Query: 116 LVGNKCDLAHRRAVSKEE 133
           ++GNK D     AVS+EE
Sbjct: 125 ILGNKIDK--PGAVSEEE 140

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 46.2 bits (109), Expect = 2e-06
 Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 10/128 (7%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           + + +G  G GK+ +L +     F QP+  +   VE      T++ + +K  IWD  G+ 
Sbjct: 1   RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVE------TVEYKNLKFTIWDVGGKH 54

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLV-GNKCDLAH 125
             R + + YY      + V D + R+  +   S L           +++L+  NK D+A 
Sbjct: 55  KLRPLWKHYYLNTQAVVFVIDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG 114

Query: 126 RRAVSKEE 133
             A+S EE
Sbjct: 115 --ALSVEE 120

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3)

 Score = 46.4 bits (110), Expect = 2e-06
 Identities = 34/146 (23%), Positives = 61/146 (41%), Gaps = 28/146 (19%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTI-----DGRPIKLQIWDT 62
           K +++GD+GVGKS L+      +       T+G     R  T      + +   +++WD 
Sbjct: 2   KVLVLGDSGVGKSSLVHLLCKNQVLGNPSWTVGCSVDVRHHTYGEGTPEEKTFYVELWDV 61

Query: 63  AGQ----ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSW-LE--------------- 102
            G     ES +S    +Y    G + V+D+T +++  +L  W LE               
Sbjct: 62  GGSVGSAESVKSTRAVFYNQINGIIFVHDLTNKKSSQNLYRWSLEALNRDTFPAGLLVTN 121

Query: 103 ---DARQHANPNMSIMLVGNKCDLAH 125
              D+ Q A   + ++++G K D   
Sbjct: 122 GDYDSEQFAGNPVPLLVIGTKLDQIP 147

RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. Length = 204

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 40/127 (31%), Positives = 54/127 (42%), Gaps = 13/127 (10%)

Query: 11  IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS 70
           ++G    GK+ L+      +F    D    V F  R VT     IK  +WD  GQ  FRS
Sbjct: 4   LVGLQNSGKTTLVNVIASGQF--SEDTIPTVGFNMRKVTKGNVTIK--VWDLGGQPRFRS 59

Query: 71  ITRSYYRGAAGALLVYDITRRETF----NHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
           +   Y RG    + V D   RE      N L   LE       P   ++++GNK DL   
Sbjct: 60  MWERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEGIP---LLVLGNKNDLPG- 115

Query: 127 RAVSKEE 133
            A+S +E
Sbjct: 116 -ALSVDE 121

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 39/174 (22%), Positives = 69/174 (39%), Gaps = 20/174 (11%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDK----RFQPVHDL--------TIGVEFGARMVTIDGRPI 55
           K ++IG  G GK+  +   +DK           +        T+ ++FG+  + +D    
Sbjct: 12  KIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGS--IELDED-T 68

Query: 56  KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIM 115
            + ++ T GQE F+ +     RGA GA+++ D +R  TF+             NP + ++
Sbjct: 69  GVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFL--TSRNP-IPVV 125

Query: 116 LVGNKCDLAHRRAVSKEEGEQFAKENGLLF-LEASARTAQNVEEAFIKTAAKIL 168
           +  NK DL       K   E    E   +  +E  A   +   +       K L
Sbjct: 126 VAINKQDLFDALPPEK-IREALKLELLSVPVIEIDATEGEGARDQLDVLLLKDL 178

Length = 187

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 44.3 bits (105), Expect = 7e-06
 Identities = 43/170 (25%), Positives = 80/170 (47%), Gaps = 29/170 (17%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIGVEFGARMVTIDGRPIKLQIWDTAGQESF 68
           +++G    GKS LL +   K  + V  + T+G  F   M+ ++   + L +WD  GQE  
Sbjct: 3   LLLGLDSAGKSTLLYKL--KHAELVTTIPTVG--FNVEMLQLEKH-LSLTVWDVGGQEKM 57

Query: 69  RSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDAR---QHA--NPNMS---IMLVGNK 120
           R++ + Y     G + V D +           L++++   +H   N ++    ++L+ NK
Sbjct: 58  RTVWKCYLENTDGLVYVVDSSDEAR-------LDESQKELKHILKNEHIKGVPVVLLANK 110

Query: 121 CDLAHRRAVSKEE-GEQFAKE----NGLLFLEA-SARTAQNVEEAFIKTA 164
            DL    A++ EE   +F  +    +   +++  SA T + + EAF K A
Sbjct: 111 QDLPG--ALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLA 158

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 44.4 bits (105), Expect = 8e-06
 Identities = 42/177 (23%), Positives = 75/177 (42%), Gaps = 21/177 (11%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIGVEFGARMVTI---DGRPIKLQIWDTAGQ 65
           +++G    GK+ +L +     F  V+ + T G  F    + +   + + +    WD  GQ
Sbjct: 7   VMLGLDSAGKTTVLYRLKFNEF--VNTVPTKG--FNTEKIKVSLGNAKGVTFHFWDVGGQ 62

Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLA 124
           E  R + +SY R   G + V D    E      + L    +   N  + ++++ NK DL 
Sbjct: 63  EKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITKFSENQGVPVLVLANKQDL- 121

Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVND 181
              A+   E E+      L   E S+ T  +V+       A I + +QEG L+ + +
Sbjct: 122 -PNALPVSEVEKL-----LALHELSSSTPWHVQ----PACAIIGEGLQEG-LEKLYE 167

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|206668 cd01881, Obg_like, Obg-like family of GTPases consist of five subfamilies: Obg, DRG, YyaF/YchF, Ygr210, and NOG1

 Score = 43.9 bits (104), Expect = 8e-06
 Identities = 39/179 (21%), Positives = 59/179 (32%), Gaps = 32/179 (17%)

Query: 10  IIIGDTGVGKSCLL--LQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG--Q 65
            ++G   VGKS LL  L             T+    G   V   G  + +QI D  G   
Sbjct: 1   GLVGLPNVGKSTLLSALTSAKVEIASYPFTTLEPNVG---VFEFGDGVDIQIIDLPGLLD 57

Query: 66  ESF------RSITRSYYRGAAGALLVYDITRRETFNHL----------SSWLEDARQHAN 109
            +         I    YR     L V D +     + L          S      +    
Sbjct: 58  GASEGRGLGEQILAHLYRSDL-ILHVIDASEDCVGDPLEDQKTLNEEVSGSFLFLK---- 112

Query: 110 PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 168
            N   M+V NK D+A    +     +    + G+  +  SA T   ++   I+T  K+L
Sbjct: 113 -NKPEMIVANKIDMASENNLK--RLKLDKLKRGIPVVPTSALTRLGLDRV-IRTIRKLL 167

The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to form one major branch of the Obg family and the Ygr210 and YchF subfamilies form another branch. No GEFs, GAPs, or GDIs for Obg have been identified. Length = 167

>gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only]

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 48/192 (25%), Positives = 72/192 (37%), Gaps = 44/192 (22%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL------TIGVEFGARMVTIDGRPIKLQIW 60
            K +IIG   VGKS LL     +    V D+       I        + ++G P++L   
Sbjct: 218 LKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEE-----DINLNGIPVRLV-- 270

Query: 61  DTAG-------------QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQH 107
           DTAG             + + ++I       A   L V D ++      L        + 
Sbjct: 271 DTAGIRETDDVVERIGIERAKKAI-----EEADLVLFVLDASQ-----PLDKEDLALIEL 320

Query: 108 ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVE---EAFIKTA 164
                 I++V NK DL     VSK E E     NG   +  SA+T + ++   EA  +  
Sbjct: 321 LPKKKPIIVVLNKADL-----VSKIELESEKLANGDAIISISAKTGEGLDALREAIKQLF 375

Query: 165 AKILQNIQEGAL 176
            K L N +   L
Sbjct: 376 GKGLGNQEGLFL 387

Length = 454

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 43.0 bits (101), Expect = 2e-05
 Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 8/118 (6%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           + +++G    GK+ +L +   K  + V  + TIG      + T+  + I   +WD  GQ+
Sbjct: 15  RILMVGLDAAGKTTILYKL--KLGESVTTIPTIGFN----VETVTYKNISFTVWDVGGQD 68

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLV-GNKCDL 123
             R + R YY    G + V D   R+  +     L           +++LV  NK DL
Sbjct: 69  KIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDL 126

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional

 Score = 43.3 bits (102), Expect = 3e-05
 Identities = 42/169 (24%), Positives = 70/169 (41%), Gaps = 37/169 (21%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVT----------IDG---RPIK 56
           +++GD+GVGKS L+              TIG   G + +T          I G   R   
Sbjct: 25  LVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFF 84

Query: 57  LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN------P 110
           +++WD +G E ++     +Y    G + V+D+++R T   L  W   A + A       P
Sbjct: 85  VELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKW---ASEVAATGTFSAP 141

Query: 111 NMS---------IMLVGNKCDLAHRRAVSKEEG------EQFAKENGLL 144
             S          +++GNK D+A +       G       Q+ ++ GLL
Sbjct: 142 LGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVDAARQWVEKQGLL 190

Length = 334

>gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase

 Score = 41.3 bits (97), Expect = 7e-05
 Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 17/126 (13%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR 69
           +++G  G GK+ LL   + +R       T G       V I  +   +++ +  G ++ R
Sbjct: 3   LVLGLDGAGKTSLLHSLSSERSLESVVPTTGFN----SVAIPTQDAIMELLEIGGSQNLR 58

Query: 70  SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQH------ANPNMSIMLVGNKCDL 123
              + Y  G+ G + V D    E        L  ARQ         P++ ++++ NK DL
Sbjct: 59  KYWKRYLSGSQGLIFVVDSADSER-------LPLARQELHQLLQHPPDLPLVVLANKQDL 111

Query: 124 AHRRAV 129
              R+V
Sbjct: 112 PAARSV 117

Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 41.2 bits (97), Expect = 8e-05
 Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 14/128 (10%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR 69
           +++G    GK+ +L Q   +    +   T G  F  + V  DG   KL +WD  GQ   R
Sbjct: 19  LLLGLDNAGKTTILKQLASEDISHITP-TQG--FNIKNVQADG--FKLNVWDIGGQRKIR 73

Query: 70  SITRSYYRGAAGALLVYDITRRETFNH----LSSWLEDARQHANPNMSIMLVGNKCDLAH 125
              R+Y+      + V D   R+ F      L   LE+ +    P   +++  NK DL  
Sbjct: 74  PYWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLEEEKLAGVP---VLVFANKQDLL- 129

Query: 126 RRAVSKEE 133
             A   EE
Sbjct: 130 -TAAPAEE 136

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 15/83 (18%)

Query: 49  TIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA 108
           T++ + +K  +WD  GQ+  R + R YY+   G + V D   RE          DAR+  
Sbjct: 55  TVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIG-------DAREEL 107

Query: 109 NP--------NMSIMLVGNKCDL 123
                     +  +++  NK DL
Sbjct: 108 ERMLSEDELRDAVLLVFANKQDL 130

Length = 182

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 15/84 (17%)

Query: 49  TIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQH- 107
           T+  + +K  +WD  GQ+  R + R YY G  G + V D   R+        +++ARQ  
Sbjct: 47  TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDR-------IDEARQEL 99

Query: 108 ----ANPNMS---IMLVGNKCDLA 124
                +  M    +++  NK DL 
Sbjct: 100 HRIINDREMRDALLLVFANKQDLP 123

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase

 Score = 39.4 bits (93), Expect = 3e-04
 Identities = 41/171 (23%), Positives = 62/171 (36%), Gaps = 44/171 (25%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL------TIGVEFGARMVTIDGRPIKLQIW 60
            K +I G   VGKS LL     +    V D+       I        + + G  I +++ 
Sbjct: 4   IKVVIAGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEE-----EIDLGG--IPVRLI 56

Query: 61  DTAGQESFRS---------ITRSYYRGAAGA---LLVYDITRRETFNHLSSWLEDARQHA 108
           DTAG    R          I R+       A   LLV D +            ED     
Sbjct: 57  DTAG---LRETEDEIEKIGIERAREA-IEEADLVLLVVDASEGLD-------EEDLEILE 105

Query: 109 NP-NMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEE 158
            P    +++V NK DL         + E  ++ NG   +  SA+T + ++E
Sbjct: 106 LPAKKPVIVVLNKSDLL-------SDAEGISELNGKPIIAISAKTGEGIDE 149

TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. Length = 159

>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 14/131 (10%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            + +++G    GK+ +L +F  +        TI    G  + T++    KL IWD  GQ+
Sbjct: 15  MRILMLGLDNAGKTTILKKFNGEDIS-----TISPTLGFNIKTLEYNGYKLNIWDVGGQK 69

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFN----HLSSWLEDARQHANPNMSIMLVGNKCD 122
           S RS  R+Y+      + V D + R         L   L + R       ++++  NK D
Sbjct: 70  SLRSYWRNYFESTDALIWVVDSSDRARLEDCKRELQKLLVEERLAGA---TLLIFANKQD 126

Query: 123 LAHRRAVSKEE 133
           L    A+S EE
Sbjct: 127 LP--GALSPEE 135

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173

>gnl|CDD|206646 cd00880, Era_like, E

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 36/175 (20%), Positives = 52/175 (29%), Gaps = 32/175 (18%)

Query: 11  IIGDTGVGKSCLLLQFT-DKRFQ--PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG--- 64
           I G   VGKS LL            P+   T           +   P+ L   DT G   
Sbjct: 2   IFGRPNVGKSSLLNALLGQNVGIVSPIPGTTRDPV-RKEWELLPLGPVVLI--DTPGLDE 58

Query: 65  ---QESFRSI-TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN---PNMSIMLV 117
                  R    R     A   LLV D              E+  +          ++LV
Sbjct: 59  EGGLGRERVEEARQVADRADLVLLVVDSDLTPV--------EEEAKLGLLRERGKPVLLV 110

Query: 118 GNKCDL----AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 168
            NK DL         + + + E          +  SA   + ++E   K  A++L
Sbjct: 111 LNKIDLVPESEEEELLRERKLELLPDLP---VIAVSALPGEGIDE-LRKKIAELL 161

coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 9/89 (10%)

Query: 38  TIG--VEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFN 95
           TIG  VE      T++ + I   +WD  GQ+  R + R Y++   G + V D   RE   
Sbjct: 31  TIGFNVE------TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIG 84

Query: 96  HLSSWLEDARQHANPNMSIMLV-GNKCDL 123
                L+          +++LV  NK DL
Sbjct: 85  EAREELQRMLNEDELRDAVLLVFANKQDL 113

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 8/57 (14%)

Query: 38 TIG--VEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE 92
          TIG  VE      T+  + +K Q+WD  GQ S R   R YY      + V D T R+
Sbjct: 30 TIGFNVE------TVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRD 80

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	211
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
PLN03108	210	Rab family protein; Provisional	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	100.0
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	100.0
PLN03110	216	Rab GTPase; Provisional	100.0
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
KOG0394	210	consensus Ras-related GTPase [General function pre	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	100.0
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	100.0
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	100.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	100.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	100.0
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
PLN03118	211	Rab family protein; Provisional	100.0
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	100.0
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	100.0
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	100.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	100.0
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	100.0
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	100.0
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	100.0
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	100.0
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	100.0
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	100.0
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	100.0
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	100.0
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	100.0
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	100.0
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	100.0
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	100.0
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	100.0
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.98
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.98
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.98
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.98
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.98
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.97
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.97
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.97
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.97
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.97
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.97
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.97
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.97
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.97
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.97
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.97
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.97
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.97
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.97
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.97
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.97
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.97
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.96
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.96
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.96
PLN00223	181	ADP-ribosylation factor; Provisional	99.96
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.96
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.96
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.96
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.96
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.96
KOG0395	196	consensus Ras-related GTPase [General function pre	99.96
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.96
PTZ00133	182	ADP-ribosylation factor; Provisional	99.96
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.96
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.96
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.95
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.95
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.95
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.95
PTZ00099	176	rab6; Provisional	99.95
PLN00023	334	GTP-binding protein; Provisional	99.95
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.95
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.95
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.94
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.94
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.94
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.94
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.94
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.93
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.93
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.93
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.93
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.93
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.93
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.93
PRK12299	335	obgE GTPase CgtA; Reviewed	99.92
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.92
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.92
COG1100	219	GTPase SAR1 and related small G proteins [General	99.92
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.91
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.91
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.91
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.91
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.91
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.91
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.9
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.9
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.9
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.9
PRK04213	201	GTP-binding protein; Provisional	99.9
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.89
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.89
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.89
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.89
PRK15494	339	era GTPase Era; Provisional	99.89
PRK03003	472	GTP-binding protein Der; Reviewed	99.88
cd00881	189	GTP_translation_factor GTP translation factor fami	99.88
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.88
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.88
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.88
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.88
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.88
PRK11058	426	GTPase HflX; Provisional	99.88
PRK12297	424	obgE GTPase CgtA; Reviewed	99.88
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.87
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.87
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.87
PRK03003	472	GTP-binding protein Der; Reviewed	99.87
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.87
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.87
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.87
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.87
PRK12296	500	obgE GTPase CgtA; Reviewed	99.87
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.86
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.86
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.86
KOG1673	205	consensus Ras GTPases [General function prediction	99.86
PRK00089	292	era GTPase Era; Reviewed	99.85
PRK00093	435	GTP-binding protein Der; Reviewed	99.85
PRK12298	390	obgE GTPase CgtA; Reviewed	99.85
COG1159	298	Era GTPase [General function prediction only]	99.85
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.85
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.85
PRK05433	600	GTP-binding protein LepA; Provisional	99.85
CHL00189	742	infB translation initiation factor 2; Provisional	99.84
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.84
PRK05306	787	infB translation initiation factor IF-2; Validated	99.84
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.84
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.84
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.84
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.84
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.83
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.83
PRK00093	435	GTP-binding protein Der; Reviewed	99.83
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.83
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.82
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.81
COG2229	187	Predicted GTPase [General function prediction only	99.81
COG1160	444	Predicted GTPases [General function prediction onl	99.81
PRK12317	425	elongation factor 1-alpha; Reviewed	99.81
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.81
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.81
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.8
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.8
PRK10218	607	GTP-binding protein; Provisional	99.79
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.79
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.79
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.79
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.79
COG0486	454	ThdF Predicted GTPase [General function prediction	99.78
COG1160	444	Predicted GTPases [General function prediction onl	99.78
COG0218	200	Predicted GTPase [General function prediction only	99.78
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.78
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.78
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.77
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.77
PRK04004	586	translation initiation factor IF-2; Validated	99.77
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.77
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.76
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.76
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.76
COG2262	411	HflX GTPases [General function prediction only]	99.75
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.75
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.74
PRK12736	394	elongation factor Tu; Reviewed	99.73
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.73
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.73
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.72
COG1084	346	Predicted GTPase [General function prediction only	99.71
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.71
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.71
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.71
PRK12735	396	elongation factor Tu; Reviewed	99.71
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.69
CHL00071	409	tufA elongation factor Tu	99.69
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.69
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.69
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.69
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.68
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.68
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.67
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.67
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.67
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.66
PRK13351	687	elongation factor G; Reviewed	99.66
PLN03126	478	Elongation factor Tu; Provisional	99.65
PLN00043	447	elongation factor 1-alpha; Provisional	99.65
COG1163	365	DRG Predicted GTPase [General function prediction	99.65
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.65
COG3596	296	Predicted GTPase [General function prediction only	99.65
PRK00049	396	elongation factor Tu; Reviewed	99.65
COG0536	369	Obg Predicted GTPase [General function prediction	99.64
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.64
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.63
PTZ00141	446	elongation factor 1- alpha; Provisional	99.62
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.62
PLN03127	447	Elongation factor Tu; Provisional	99.62
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.61
KOG1145	683	consensus Mitochondrial translation initiation fac	99.6
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.59
PRK12739	691	elongation factor G; Reviewed	99.59
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.58
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.58
PRK09866	741	hypothetical protein; Provisional	99.57
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.57
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.56
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.55
PRK09602	396	translation-associated GTPase; Reviewed	99.54
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.53
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.52
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.51
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.51
PRK00007	693	elongation factor G; Reviewed	99.5
PRK12740	668	elongation factor G; Reviewed	99.49
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.48
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.48
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.48
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.47
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.46
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.44
KOG0090	238	consensus Signal recognition particle receptor, be	99.44
PRK14845	1049	translation initiation factor IF-2; Provisional	99.42
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.42
PTZ00258	390	GTP-binding protein; Provisional	99.41
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.39
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	99.38
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.38
PRK07560	731	elongation factor EF-2; Reviewed	99.37
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.35
PRK13768	253	GTPase; Provisional	99.35
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.34
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.34
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.33
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.32
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.32
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.32
KOG3887	347	consensus Predicted small GTPase involved in nucle	99.32
PTZ00416	836	elongation factor 2; Provisional	99.32
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.32
PRK09601	364	GTP-binding protein YchF; Reviewed	99.31
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.3
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.3
KOG0082	354	consensus G-protein alpha subunit (small G protein	99.3
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.3
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.29
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.29
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.29
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.23
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.22
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.21
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.19
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.19
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.18
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.18
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.17
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.15
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.14
KOG0410	410	consensus Predicted GTP binding protein [General f	99.12
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.09
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	99.09
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.08
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.07
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	99.07
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.04
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	99.03
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.02
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.02
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	99.0
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	98.99
PRK12289	352	GTPase RsgA; Reviewed	98.98
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.98
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	98.95
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	98.93
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.91
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	98.91
PRK12288	347	GTPase RsgA; Reviewed	98.91
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.9
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.87
PRK00098	298	GTPase RsgA; Reviewed	98.87
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.84
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.78
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.77
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.76
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.72
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.7
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	98.7
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.69
KOG2486	320	consensus Predicted GTPase [General function predi	98.68
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.66
KOG0460	449	consensus Mitochondrial translation elongation fac	98.66
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.66
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.62
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.61
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.61
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.61
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	98.6
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.6
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.6
KOG0466	466	consensus Translation initiation factor 2, gamma s	98.59
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.59
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.55
COG1161	322	Predicted GTPases [General function prediction onl	98.54
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.53
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.52
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.52
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	98.5
KOG0099	379	consensus G protein subunit Galphas, small G prote	98.49
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.45
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.45
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.44
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.43
cd03112	158	CobW_like The function of this protein family is u	98.43
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.4
PRK12288	347	GTPase RsgA; Reviewed	98.35
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.34
PRK10416	318	signal recognition particle-docking protein FtsY;	98.33
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.29
PRK12289	352	GTPase RsgA; Reviewed	98.29
PRK01889	356	GTPase RsgA; Reviewed	98.27
PRK13796	365	GTPase YqeH; Provisional	98.27
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.26
COG3523	1188	IcmF Type VI protein secretion system component Va	98.25
PRK14974	336	cell division protein FtsY; Provisional	98.22
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.22
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.19
PRK13796	365	GTPase YqeH; Provisional	98.17
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.17
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.17
COG1162	301	Predicted GTPases [General function prediction onl	98.09
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.09
KOG1143	591	consensus Predicted translation elongation factor	98.07
COG0523	323	Putative GTPases (G3E family) [General function pr	98.06
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.06
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	97.99
PRK11537	318	putative GTP-binding protein YjiA; Provisional	97.98
PRK00098	298	GTPase RsgA; Reviewed	97.98
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.96
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.95
COG1162	301	Predicted GTPases [General function prediction onl	97.94
KOG4273	418	consensus Uncharacterized conserved protein [Funct	97.94
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	97.93
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.89
PRK13695	174	putative NTPase; Provisional	97.88
KOG1534	273	consensus Putative transcription factor FET5 [Tran	97.85
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.83
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	97.82
cd03114	148	ArgK-like The function of this protein family is u	97.8
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.77
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.71
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.69
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.69
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.68
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.67
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	97.64
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.63
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.62
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	97.61
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.6
KOG2484	435	consensus GTPase [General function prediction only	97.59
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.58
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.58
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.56
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.55
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.53
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	97.47
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.46
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.44
PRK10867	433	signal recognition particle protein; Provisional	97.43
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.4
TIGR00959	428	ffh signal recognition particle protein. This mode	97.39
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	97.39
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	97.36
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.34
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.31
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.29
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.29
PRK08118	167	topology modulation protein; Reviewed	97.27
cd03111	106	CpaE_like This protein family consists of proteins	97.25
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.22
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.21
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.21
cd03110	179	Fer4_NifH_child This protein family's function is	97.19
PRK07261	171	topology modulation protein; Provisional	97.19
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.17
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.16
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.16
KOG1533	290	consensus Predicted GTPase [General function predi	97.14
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	97.14
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.11
PRK10646	153	ADP-binding protein; Provisional	97.09
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.07
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.07
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.06
COG0802	149	Predicted ATPase or kinase [General function predi	97.03
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	97.02
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.01
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	97.0
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	96.98
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	96.96
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	96.96
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	96.95
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	96.94
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	96.93
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	96.92
smart00382	148	AAA ATPases associated with a variety of cellular	96.92
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	96.91
PRK01889	356	GTPase RsgA; Reviewed	96.9
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	96.89
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	96.88
PF00004	132	AAA: ATPase family associated with various cellula	96.87
PTZ00088	229	adenylate kinase 1; Provisional	96.86
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	96.86
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	96.85
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	96.84
COG4598	256	HisP ABC-type histidine transport system, ATPase c	96.83
PRK05480	209	uridine/cytidine kinase; Provisional	96.83
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	96.82
KOG0780	483	consensus Signal recognition particle, subunit Srp	96.82
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	96.82
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	96.81
PRK06217	183	hypothetical protein; Validated	96.81
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	96.81
PRK04195	482	replication factor C large subunit; Provisional	96.81
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	96.81
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	96.8
cd02036	179	MinD Bacterial cell division requires the formatio	96.8
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	96.8
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	96.8
KOG0446	657	consensus Vacuolar sorting protein VPS1, dynamin,	96.79
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	96.79
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	96.79
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	96.79
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	96.78
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	96.77
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	96.77
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	96.76
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	96.76
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	96.76
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	96.76
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	96.75
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	96.75
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	96.75
PRK14530	215	adenylate kinase; Provisional	96.75

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.6e-44  Score=252.95  Aligned_cols=188  Identities=49%  Similarity=0.847  Sum_probs=176.5

Q ss_pred             CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028251            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      .++|.+||+|+|+.|||||.|+.||.+..+.+.+..|.|+++..+.+.+++..+++++|||+|+++|++....||+++|+
T Consensus         5 ~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahG   84 (205)
T KOG0084|consen    5 EYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   84 (205)
T ss_pred             ccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCe
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCc-EEEEeCCCCCCHHHHH
Q 028251           82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF  160 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~i~~~~  160 (211)
                      +|+|||+++.++|.++..|+.++.++...++|.++|+||+|+.+.+.++.++++.++.+++.+ ++++||+++.+++++|
T Consensus        85 ii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F  164 (205)
T KOG0084|consen   85 IIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAF  164 (205)
T ss_pred             EEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHH
Confidence            999999999999999999999999999989999999999999999999999999999999999 9999999999999999


Q ss_pred             HHHHHHHHHHHhhccccccCCCCCeEEee
Q 028251          161 IKTAAKILQNIQEGALDAVNDQSGIKVGY  189 (211)
Q Consensus       161 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (211)
                      ..|...+.++...........+.++.++.
T Consensus       165 ~~la~~lk~~~~~~~~~~~~~~~~~ql~~  193 (205)
T KOG0084|consen  165 LTLAKELKQRKGLHVKWSTASLESVQLKG  193 (205)
T ss_pred             HHHHHHHHHhcccCCCCCcCCCCceeeCC
Confidence            99999999998887776654444444433

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-41  Score=239.52  Aligned_cols=188  Identities=80%  Similarity=1.270  Sum_probs=178.9

Q ss_pred             CCCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhcccc
Q 028251            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA   80 (211)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d   80 (211)
                      |.|.+.+|++++|+.|||||+|+.+|++..|.+.+..|.|+++....+++++..+++++|||+|++.+.+....||+.+-
T Consensus         1 m~~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~   80 (216)
T KOG0098|consen    1 MSYAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAA   80 (216)
T ss_pred             CCccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHH
Q 028251           81 GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF  160 (211)
Q Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~  160 (211)
                      ++|+|||++.+++|..+..|+..++++...+..+++++||+||...+.++.+|++.|++++++.++++||+++.++++.|
T Consensus        81 GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF  160 (216)
T KOG0098|consen   81 GALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAF  160 (216)
T ss_pred             ceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHH
Confidence            99999999999999999999999999988899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccccccCCCCC-eEEe
Q 028251          161 IKTAAKILQNIQEGALDAVNDQSG-IKVG  188 (211)
Q Consensus       161 ~~i~~~~~~~~~~~~~~~~~~~~~-~~~~  188 (211)
                      ......++.....+........++ ++.+
T Consensus       161 ~nta~~Iy~~~q~g~~~~~~~~k~k~k~~  189 (216)
T KOG0098|consen  161 INTAKEIYRKIQDGVFDDINESKGKIKIG  189 (216)
T ss_pred             HHHHHHHHHHHHhcccccccccccceeec
Confidence            999999999999887776655555 6644

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.6e-41  Score=239.40  Aligned_cols=198  Identities=41%  Similarity=0.738  Sum_probs=175.7

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ...+||+++|..++|||||+.||..+.|.+...+++|..+..+.+.+++..+++.||||+|+++|+++.+.|+++++++|
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi   82 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI   82 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Q 028251           84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT  163 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i  163 (211)
                      +|||+++.+||..+..|+.++.+...++.-+.+++||+||.+.+++..+++..++...++.|+++||+++.|++++|..|
T Consensus        83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I  162 (200)
T KOG0092|consen   83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI  162 (200)
T ss_pred             EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence            99999999999999999999999888888888999999999989999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccccccCCCCCeEEeeccCCCCCCCCCCccccCCCCCC
Q 028251          164 AAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGCCS  211 (211)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~  211 (211)
                      .+.+.............+..++.+..-.          .+...++|||
T Consensus       163 a~~lp~~~~~~~~~~~~~~~g~~l~~~~----------~~~~~~~~C~  200 (200)
T KOG0092|consen  163 AEKLPCSDPQERQGLPNRRQGVDLNSNQ----------EPARPSGCCA  200 (200)
T ss_pred             HHhccCccccccccccccccceecccCC----------CCcCcCCcCC
Confidence            9999777665554322222222222111          4667788996

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.4e-40  Score=235.82  Aligned_cols=176  Identities=52%  Similarity=0.972  Sum_probs=169.4

Q ss_pred             CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028251            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      +|++.+||+++|+++||||+|+.+|..+.+...+..+.|+++..+++.+++..+.+++|||+|+++++.+...|++.+++
T Consensus         8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g   87 (207)
T KOG0078|consen    8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG   87 (207)
T ss_pred             CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028251           82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  161 (211)
                      +++|||+++..+|+++..|+..+.++....+|.++|+||+|+...+.++.+.+++++.++|++|+++||++|.||++.|.
T Consensus        88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~  167 (207)
T KOG0078|consen   88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFL  167 (207)
T ss_pred             eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHH
Confidence            99999999999999999999999999988999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcccc
Q 028251          162 KTAAKILQNIQEGALD  177 (211)
Q Consensus       162 ~i~~~~~~~~~~~~~~  177 (211)
                      .|.+.++.+.++...+
T Consensus       168 ~La~~i~~k~~~~~~~  183 (207)
T KOG0078|consen  168 SLARDILQKLEDAELE  183 (207)
T ss_pred             HHHHHHHhhcchhhhc
Confidence            9999999877665433

>PLN03108 Rab family protein; Provisional

Probab=100.00  E-value=7.8e-39  Score=240.81  Aligned_cols=210  Identities=85%  Similarity=1.326  Sum_probs=190.7

Q ss_pred             CCCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhcccc
Q 028251            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA   80 (211)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d   80 (211)
                      |++++.+||+|+|++|+|||||+++|+...+.+.+.++.+.++....+.+++..+.+.+||++|++.+..++..++..+|
T Consensus         1 ~~~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad   80 (210)
T PLN03108          1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAA   80 (210)
T ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence            89999999999999999999999999999988888888888888888889998899999999999999999999999999


Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHH
Q 028251           81 GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF  160 (211)
Q Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~  160 (211)
                      ++|+|||++++.++..+..|+..+......+.|+++++||+|+...+.+..+++.+++...+++++++|++++.|++++|
T Consensus        81 ~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f  160 (210)
T PLN03108         81 GALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF  160 (210)
T ss_pred             EEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999999988877666689999999999998777788889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccccccCCCCCeEEeeccCCCCCCCCCCccccCCCCC
Q 028251          161 IKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGCC  210 (211)
Q Consensus       161 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc  210 (211)
                      +++.+.+.+...+.......++.++....+.-++.+..+.+..++.+|||
T Consensus       161 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (210)
T PLN03108        161 IKTAAKIYKKIQDGVFDVSNESYGIKVGYGAIPGASGGRDGTSSQGGGCC  210 (210)
T ss_pred             HHHHHHHHHHhhhccccccccccccccccCCCCCCCCCccccccCCCCCC
Confidence            99999998887776666677778887777777777778889999999999

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.6e-39  Score=230.41  Aligned_cols=168  Identities=41%  Similarity=0.702  Sum_probs=159.3

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ..+|++++|+.+|||||||+|++.+.+...|.+++|+++...++.+.+.+++|++|||+|+|+|+.+.+.|+++++++|+
T Consensus        21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi  100 (221)
T KOG0094|consen   21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI  100 (221)
T ss_pred             eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCC-CCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Q 028251           85 VYDITRRETFNHLSSWLEDARQHANP-NMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT  163 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i  163 (211)
                      |||+++..+|++...|++.+...... +.-+++|+||.||.+.+++..++++..++++++.|+++||+.|.||.++|..|
T Consensus       101 VyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrI  180 (221)
T KOG0094|consen  101 VYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRI  180 (221)
T ss_pred             EEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHH
Confidence            99999999999999999999888875 47788889999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHh
Q 028251          164 AAKILQNIQ  172 (211)
Q Consensus       164 ~~~~~~~~~  172 (211)
                      ..++.....
T Consensus       181 aa~l~~~~~  189 (221)
T KOG0094|consen  181 AAALPGMEV  189 (221)
T ss_pred             HHhccCccc
Confidence            887766655

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.6e-39  Score=233.38  Aligned_cols=210  Identities=50%  Similarity=0.846  Sum_probs=183.3

Q ss_pred             CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028251            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      +|||.+||+++|++++|||-|+.||..+.|.....+|.|+++....+.++++.++.+||||+|+++|++...+|++.+.+
T Consensus        10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvG   89 (222)
T KOG0087|consen   10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVG   89 (222)
T ss_pred             ccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccce
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028251           82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  161 (211)
                      +++|||++...+|+++..|+.+++.+...++++++|+||+||...+.++.++++.++...+..++++||.++.+++++|+
T Consensus        90 AllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~  169 (222)
T KOG0087|consen   90 ALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFE  169 (222)
T ss_pred             eEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHHH
Confidence            99999999999999999999999999999999999999999988888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccccccCCCCCe---EEeeccCCCCCCCCCCccccCCCCCC
Q 028251          162 KTAAKILQNIQEGALDAVNDQSGI---KVGYGRGQGPSGARDGTVSQRGGCCS  211 (211)
Q Consensus       162 ~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~cc~  211 (211)
                      .++..+.....+...........-   .-+......+......++.+++.|||
T Consensus       170 ~~l~~I~~~vs~k~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~cc~  222 (222)
T KOG0087|consen  170 RVLTEIYKIVSKKQLDENNDPLESSSPLQGQEISVHPTSEEPFSPTKKSGCCS  222 (222)
T ss_pred             HHHHHHHHHHHHHhhhccccccccCCCCCCcccccccCCccccccccCCCCCC
Confidence            999999998887665555442221   11112222222233335555667775

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1.8e-39  Score=223.14  Aligned_cols=172  Identities=47%  Similarity=0.826  Sum_probs=162.4

Q ss_pred             CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028251            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      |++.+||+++|.+|+|||||+.+|....+.+..+.++|+++..+.+.+++..+++.||||+|+++|+.+.+.|++.+.++
T Consensus         8 ~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGi   87 (209)
T KOG0080|consen    8 YDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGI   87 (209)
T ss_pred             cceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCcee
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028251           83 LLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  161 (211)
                      |+|||++.+++|.++..|..++..+.. +++-.++|+||.|...++.++.+++.++++++++.|+++||++.++++..|+
T Consensus        88 IlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~Fe  167 (209)
T KOG0080|consen   88 ILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFE  167 (209)
T ss_pred             EEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHH
Confidence            999999999999999999999988775 6677789999999988889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhc
Q 028251          162 KTAAKILQNIQEG  174 (211)
Q Consensus       162 ~i~~~~~~~~~~~  174 (211)
                      .+++++++...-.
T Consensus       168 elveKIi~tp~l~  180 (209)
T KOG0080|consen  168 ELVEKIIETPSLW  180 (209)
T ss_pred             HHHHHHhcCcchh
Confidence            9999997755433

>PLN03110 Rab GTPase; Provisional

Probab=100.00  E-value=6.2e-37  Score=231.37  Aligned_cols=207  Identities=48%  Similarity=0.821  Sum_probs=171.4

Q ss_pred             CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028251            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      +++.+||+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.|||++|++++..++..+++.++++
T Consensus         9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~   88 (216)
T PLN03110          9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA   88 (216)
T ss_pred             cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence            45789999999999999999999999998888888989999888889999999999999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Q 028251           83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK  162 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  162 (211)
                      |+|||++++.+++.+..|+..+......+.|+++++||+|+........++...++...+++++++||+++.|++++|+.
T Consensus        89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~  168 (216)
T PLN03110         89 LLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQT  168 (216)
T ss_pred             EEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999988776668999999999999777777778888888889999999999999999999999


Q ss_pred             HHHHHHHHHhhccccccCCCCCeEEeeccCCCCCCCCCCccccCCCCCC
Q 028251          163 TAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGCCS  211 (211)
Q Consensus       163 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~  211 (211)
                      |.+.+.+..............+  .+....+......+.++.+++||||
T Consensus       169 l~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~c~  215 (216)
T PLN03110        169 ILLEIYHIISKKALAAQEAAAN--SGLPGQGTTINVADTSGNNKRGCCS  215 (216)
T ss_pred             HHHHHHHHhhccccccccCccc--ccCcCcCCcccccCccCCCCCCCcC
Confidence            9999988655433322221111  1111111111223345778889996

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.6e-38  Score=215.15  Aligned_cols=208  Identities=54%  Similarity=0.891  Sum_probs=189.8

Q ss_pred             CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028251            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      +|||.+|++++|+.|.|||.|+++|...++.....+++|+++..+.+++.++.++++||||+|+++|++....|++.+.+
T Consensus         5 tYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAG   84 (214)
T KOG0086|consen    5 TYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAG   84 (214)
T ss_pred             hhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028251           82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  161 (211)
                      .++|||++++++|+.+..|+..++....+++-+++++||.|+.+.+++...++..|+.+..+.+.++|+++|+|+++.|-
T Consensus        85 AlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl  164 (214)
T KOG0086|consen   85 ALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFL  164 (214)
T ss_pred             eEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHH
Confidence            99999999999999999999999999888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccccccCCCCCeEEeeccCCCCCCCCCCccccCCCC
Q 028251          162 KTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGC  209 (211)
Q Consensus       162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c  209 (211)
                      ...+.++.+.+.++.++.+..++|--|+-.=-..-.+++-....++.|
T Consensus       165 ~c~~tIl~kIE~GElDPer~gsGIQYGdaslR~l~~p~s~r~~n~~~c  212 (214)
T KOG0086|consen  165 KCARTILNKIESGELDPERMGSGIQYGDASLRQLRQPRSARAVNPQPC  212 (214)
T ss_pred             HHHHHHHHHHhhcCCCHHHcccccccchhhhhccCCcchhccCCCCCC
Confidence            999999999999999999999998777655323322232233344455

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=2.6e-36  Score=222.94  Aligned_cols=170  Identities=38%  Similarity=0.744  Sum_probs=156.4

Q ss_pred             CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028251            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      ++++.+||+++|..|||||||+++|....+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|+
T Consensus         2 ~~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~   81 (189)
T cd04121           2 AYDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQG   81 (189)
T ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence            46788999999999999999999999998888888888888888888899999999999999999999999999999999


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028251           82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  161 (211)
                      +|+|||++++.+|+++..|+..+.... ++.|++||+||.|+...+.+..++++.+++..+++++++||++|.||+++|+
T Consensus        82 illVfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~  160 (189)
T cd04121          82 IILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFT  160 (189)
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHH
Confidence            999999999999999999999997654 5899999999999987777888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 028251          162 KTAAKILQNIQ  172 (211)
Q Consensus       162 ~i~~~~~~~~~  172 (211)
                      +|.+.+..+..
T Consensus       161 ~l~~~i~~~~~  171 (189)
T cd04121         161 ELARIVLMRHG  171 (189)
T ss_pred             HHHHHHHHhcC
Confidence            99988865444

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=2e-37  Score=213.66  Aligned_cols=206  Identities=45%  Similarity=0.759  Sum_probs=181.7

Q ss_pred             CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEE-CCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028251            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTI-DGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      ..|+++++++|++-+|||+|++.+..+++.+-.+|++|+++....+.+ ++..+++++|||+|+++++++...|+++.=+
T Consensus         5 f~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvg   84 (213)
T KOG0091|consen    5 FHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVG   84 (213)
T ss_pred             eEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccc
Confidence            458999999999999999999999999999999999999999888777 6788999999999999999999999999999


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcC-CCC-eEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Q 028251           82 ALLVYDITRRETFNHLSSWLEDARQHAN-PNM-SIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEA  159 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~-p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~  159 (211)
                      +++|||++++++|+.+..|+.+...+.. +.+ -+.+|++|+|+...++++.+++++++..++..|+++|+++|.|+++.
T Consensus        85 vllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEA  164 (213)
T KOG0091|consen   85 VLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEA  164 (213)
T ss_pred             eEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHH
Confidence            9999999999999999999998877665 444 45778999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccccccCCCCCeEEeeccCCCCCCCCCCccccCCCCCC
Q 028251          160 FIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGCCS  211 (211)
Q Consensus       160 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~  211 (211)
                      |..|.+.+.....+++......-.+++.+-+. +...  +..-+.+.+.|||
T Consensus       165 F~mlaqeIf~~i~qGeik~edgw~gvKSsrpn-~i~~--s~~~~~P~k~c~C  213 (213)
T KOG0091|consen  165 FDMLAQEIFQAIQQGEIKLEDGWGGVKSSRPN-QIPR--SPSRKQPSKPCQC  213 (213)
T ss_pred             HHHHHHHHHHHHhcCceeeeeccccccccCCC-cCCC--cccccCCCCCCCC
Confidence            99999999999999999999888888773333 2222  2333444446877

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=4.3e-36  Score=223.78  Aligned_cols=165  Identities=45%  Similarity=0.806  Sum_probs=152.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +.|+++|..|||||||+++|..+.+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            47999999999999999999999999888899899998888899999999999999999999999999999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHc-CCcEEEEeCCCCCCHHHHHHHHHH
Q 028251           87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN-GLLFLEASARTAQNVEEAFIKTAA  165 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~i~~~~~~i~~  165 (211)
                      |++++.+|+.+..|+..+......+.|+++|+||+|+...+++..+++.+++.+. ++.++++||++|.|++++|++|.+
T Consensus        81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~  160 (202)
T cd04120          81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD  160 (202)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence            9999999999999999887766668999999999999877788888888888875 788999999999999999999999


Q ss_pred             HHHHHH
Q 028251          166 KILQNI  171 (211)
Q Consensus       166 ~~~~~~  171 (211)
                      .+....
T Consensus       161 ~~~~~~  166 (202)
T cd04120         161 DILKKM  166 (202)
T ss_pred             HHHHhC
Confidence            887653

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=1.3e-35  Score=221.66  Aligned_cols=177  Identities=45%  Similarity=0.753  Sum_probs=158.1

Q ss_pred             CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028251            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      ++++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.|||+||++.+..++..+++.+|+
T Consensus         2 ~~~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~   81 (199)
T cd04110           2 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHG   81 (199)
T ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcE
Confidence            46788999999999999999999999999888888888888888888888888899999999999999999999999999


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028251           82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  161 (211)
                      +|+|||+++++++..+..|+..+.... ...|++||+||+|+.+...+..++...++...+.+++++|+++|.|++++|+
T Consensus        82 iilv~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~  160 (199)
T cd04110          82 VIVVYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFN  160 (199)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHH
Confidence            999999999999999999999886654 4789999999999987667777888888888899999999999999999999


Q ss_pred             HHHHHHHHHHhhcccccc
Q 028251          162 KTAAKILQNIQEGALDAV  179 (211)
Q Consensus       162 ~i~~~~~~~~~~~~~~~~  179 (211)
                      +|.+.++....+......
T Consensus       161 ~l~~~~~~~~~~~~~~~~  178 (199)
T cd04110         161 CITELVLRAKKDNLAKQQ  178 (199)
T ss_pred             HHHHHHHHhhhccCcccc
Confidence            999999877665544433

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=3.6e-37  Score=209.04  Aligned_cols=168  Identities=49%  Similarity=0.826  Sum_probs=160.9

Q ss_pred             CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028251            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      |+..++.+|+|++|+|||+|+.+|....|...|..++|.++.++++.+++..+.++|||++|+++|+.+...+++..+++
T Consensus         5 ~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv   84 (198)
T KOG0079|consen    5 YDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGV   84 (198)
T ss_pred             HHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceE
Confidence            55778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Q 028251           83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK  162 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  162 (211)
                      |+|||+++.++|.++..|+++++.... ..|-++|+||.|.++.+.+..++++.++...++.+|++|+++..++++.|.-
T Consensus        85 ~vVYDVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~c  163 (198)
T KOG0079|consen   85 IVVYDVTNGESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHC  163 (198)
T ss_pred             EEEEECcchhhhHhHHHHHHHHHhcCc-cccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHH
Confidence            999999999999999999999988775 7899999999999998889999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 028251          163 TAAKILQNI  171 (211)
Q Consensus       163 i~~~~~~~~  171 (211)
                      |.+.+++..
T Consensus       164 it~qvl~~k  172 (198)
T KOG0079|consen  164 ITKQVLQAK  172 (198)
T ss_pred             HHHHHHHHH
Confidence            999888776

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=2.4e-35  Score=220.59  Aligned_cols=173  Identities=38%  Similarity=0.667  Sum_probs=153.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEEC-CEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID-GRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      +||+++|++|||||||+++|+.+.+...+.++.+.++....+.++ +..+.+.+||+||++.+..++..+++.+|++|+|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            589999999999999999999999988888998988888888887 7889999999999999999999999999999999


Q ss_pred             EECCCHHHHHHHHHHHHHHHHhc----CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC-CcEEEEeCCCCCCHHHHH
Q 028251           86 YDITRRETFNHLSSWLEDARQHA----NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAF  160 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~----~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~i~~~~  160 (211)
                      ||++++.+|..+..|+..+....    ..+.|+++|+||+|+.+......+++..++...+ ..++++||++|.|++++|
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f  160 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM  160 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence            99999999999999988876532    2578999999999997656677888999999988 689999999999999999


Q ss_pred             HHHHHHHHHHHhhcccccc
Q 028251          161 IKTAAKILQNIQEGALDAV  179 (211)
Q Consensus       161 ~~i~~~~~~~~~~~~~~~~  179 (211)
                      ++|.+.+.+..........
T Consensus       161 ~~l~~~l~~~~~~~~~~~~  179 (201)
T cd04107         161 RFLVKNILANDKNLQQAET  179 (201)
T ss_pred             HHHHHHHHHhchhhHhhcC
Confidence            9999998876554444433

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=1.6e-36  Score=213.27  Aligned_cols=169  Identities=38%  Similarity=0.699  Sum_probs=157.9

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ..+||+++|++|+|||||+|++...+|...+..++|.++..+.+.+++..+.++||||+|+++|.++...+++.+|.+++
T Consensus         8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvl   87 (210)
T KOG0394|consen    8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVL   87 (210)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEE
Confidence            56999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhcC----CCCeEEEEEecCCCCCC--CCCCHHHHHHHHHHc-CCcEEEEeCCCCCCHH
Q 028251           85 VYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKCDLAHR--RAVSKEEGEQFAKEN-GLLFLEASARTAQNVE  157 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~i~  157 (211)
                      |||++++.+|+++..|+.++.....    ...|++|++||.|+.+.  ++++.+.+..+|... +++|+++||+...||+
T Consensus        88 vydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~  167 (210)
T KOG0394|consen   88 VYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNVD  167 (210)
T ss_pred             EeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccHH
Confidence            9999999999999999999977665    35799999999999763  678889999999985 5899999999999999


Q ss_pred             HHHHHHHHHHHHHHhh
Q 028251          158 EAFIKTAAKILQNIQE  173 (211)
Q Consensus       158 ~~~~~i~~~~~~~~~~  173 (211)
                      ++|+.+.+.+++....
T Consensus       168 ~AFe~ia~~aL~~E~~  183 (210)
T KOG0394|consen  168 EAFEEIARRALANEDR  183 (210)
T ss_pred             HHHHHHHHHHHhccch
Confidence            9999999999887764

>cd04111 Rab39 Rab39 subfamily

Probab=100.00  E-value=5.7e-35  Score=219.84  Aligned_cols=189  Identities=52%  Similarity=0.890  Sum_probs=164.4

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEE-CCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTI-DGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      +++||+|+|++|||||||+++|++..+...+.++.+.++....+.+ ++..+.+.+||++|++.+..++..+++.+|++|
T Consensus         1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (211)
T cd04111           1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL   80 (211)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence            4689999999999999999999999998888888888888777776 466789999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Q 028251           84 LVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK  162 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  162 (211)
                      +|||++++.++.++..|+..+..... ...|++|++||.|+.+...+..++...+++..+++++++||+++.|++++|+.
T Consensus        81 lv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~  160 (211)
T cd04111          81 LVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFEL  160 (211)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999998876543 45788999999999877778888889999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccccccCCCCCeEEeeccCC
Q 028251          163 TAAKILQNIQEGALDAVNDQSGIKVGYGRGQ  193 (211)
Q Consensus       163 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (211)
                      |.+.+.++...+.......-.+++.+..++.
T Consensus       161 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (211)
T cd04111         161 LTQEIYERIKRGELCALDGWDGVKSGFPAGR  191 (211)
T ss_pred             HHHHHHHHhhcCCCCccccccccccCCCccc
Confidence            9999999888776555555555555555533

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.8e-36  Score=206.10  Aligned_cols=174  Identities=47%  Similarity=0.842  Sum_probs=163.7

Q ss_pred             CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028251            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      +|.+.+||+++|..|+|||.|+++|..+-|++....+.|+++-++++.+++.+++++||||+|+++|++..+.|++.+++
T Consensus         3 dykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsaha   82 (213)
T KOG0095|consen    3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHA   82 (213)
T ss_pred             ccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcce
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028251           82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  161 (211)
                      +|+|||++-.++|..+..|+.++..+...++--|+|+||.|+.+.++++...++.+.......|.++||++.++++.+|.
T Consensus        83 lilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~  162 (213)
T KOG0095|consen   83 LILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFL  162 (213)
T ss_pred             EEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHH
Confidence            99999999999999999999999999887888899999999999889998999999999888999999999999999999


Q ss_pred             HHHHHHHHHHhhcc
Q 028251          162 KTAAKILQNIQEGA  175 (211)
Q Consensus       162 ~i~~~~~~~~~~~~  175 (211)
                      .+.-.+....+..+
T Consensus       163 ~~a~rli~~ar~~d  176 (213)
T KOG0095|consen  163 DLACRLISEARQND  176 (213)
T ss_pred             HHHHHHHHHHHhcc
Confidence            98877776665443

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1e-35  Score=201.78  Aligned_cols=173  Identities=41%  Similarity=0.790  Sum_probs=164.3

Q ss_pred             CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028251            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      ++++-+|++++|...+|||||+.++++..+.+....++|+++..+++--..+.+++++|||+|+++++.+...+++++++
T Consensus        17 nFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamg   96 (193)
T KOG0093|consen   17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMG   96 (193)
T ss_pred             cccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccce
Confidence            46788999999999999999999999999999999999999999988777788999999999999999999999999999


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028251           82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  161 (211)
                      +|++||+++.++|..+..|.-.+..+...+.|+|+++||||+.+++.++.+.+..++.+.|+.|+++||+.+.|++++|+
T Consensus        97 fiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe  176 (193)
T KOG0093|consen   97 FILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFE  176 (193)
T ss_pred             EEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHH
Confidence            99999999999999999999999988888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhc
Q 028251          162 KTAAKILQNIQEG  174 (211)
Q Consensus       162 ~i~~~~~~~~~~~  174 (211)
                      .++..+-+...+.
T Consensus       177 ~lv~~Ic~kmses  189 (193)
T KOG0093|consen  177 RLVDIICDKMSES  189 (193)
T ss_pred             HHHHHHHHHhhhh
Confidence            9999888776653

>cd04125 RabA_like RabA-like subfamily

Probab=100.00  E-value=2.1e-34  Score=213.41  Aligned_cols=168  Identities=45%  Similarity=0.756  Sum_probs=152.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|++|+||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            58999999999999999999999998878888888888888888888899999999999999999999999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHH
Q 028251           87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK  166 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~  166 (211)
                      |++++.++..+..|+..+......+.|+++++||.|+.+...+..++...++...+++++++||+++.|++++|++|.+.
T Consensus        81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~  160 (188)
T cd04125          81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL  160 (188)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999887766678999999999998777777788888888888999999999999999999999999


Q ss_pred             HHHHHhhc
Q 028251          167 ILQNIQEG  174 (211)
Q Consensus       167 ~~~~~~~~  174 (211)
                      +..+....
T Consensus       161 ~~~~~~~~  168 (188)
T cd04125         161 IIKRLEEQ  168 (188)
T ss_pred             HHHHhhcC
Confidence            98765544

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=9.4e-35  Score=218.92  Aligned_cols=187  Identities=31%  Similarity=0.529  Sum_probs=152.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+++|.+|||||||+++|+.+.+.. ..++.+..+....+    ..+.+.+||++|++.+..++..+++.+|++|+||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~   75 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY   75 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence            589999999999999999999998865 46666666544332    4677999999999999999999999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCC-------------------CCCCCHHHHHHHHHHcC-----
Q 028251           87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-------------------RRAVSKEEGEQFAKENG-----  142 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-------------------~~~~~~~~~~~~~~~~~-----  142 (211)
                      |++++.+|..+..|+..+......+.|+++|+||+|+.+                   .+.+..+++..++.+.+     
T Consensus        76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~  155 (220)
T cd04126          76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML  155 (220)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence            999999999999998888766556799999999999965                   46778889999998876     


Q ss_pred             ---------CcEEEEeCCCCCCHHHHHHHHHHHHHHHHhhccccccCCCCCeEEeeccCCCCCCCCCCccccCCCCC
Q 028251          143 ---------LLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGCC  210 (211)
Q Consensus       143 ---------~~~~~~s~~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc  210 (211)
                               ++|+++||++|.||+++|..+.+.++....+...+..+.+-.+           . -.+-+++|++||
T Consensus       156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~~~~~~-----------~-~~~~~~~~~~~~  220 (220)
T cd04126         156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRTQGTV-----------N-LPNPKRSKSKCC  220 (220)
T ss_pred             cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-----------c-CCCcccCCCCCC
Confidence                     6799999999999999999999988876665544444321112           1 223467788898

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=1.3e-34  Score=210.34  Aligned_cols=165  Identities=68%  Similarity=1.113  Sum_probs=152.0

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      +.+||+++|++|+|||||+++|..+.+.+.+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+
T Consensus         1 ~~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il   80 (166)
T cd04122           1 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   80 (166)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence            35899999999999999999999999988888888888888888889999999999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Q 028251           85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA  164 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~  164 (211)
                      |||++++.++..+..|+..+......+.|+++++||+|+.+...+..+++..++...+++++++||++|.|++++|..+.
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~  160 (166)
T cd04122          81 VYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETA  160 (166)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            99999999999999999988777667899999999999988777888889999999999999999999999999999999


Q ss_pred             HHHHH
Q 028251          165 AKILQ  169 (211)
Q Consensus       165 ~~~~~  169 (211)
                      +.+.+
T Consensus       161 ~~~~~  165 (166)
T cd04122         161 KKIYQ  165 (166)
T ss_pred             HHHhh
Confidence            87754

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=8.6e-35  Score=215.79  Aligned_cols=167  Identities=39%  Similarity=0.637  Sum_probs=146.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEE
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD   87 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   87 (211)
                      ||+++|.+|||||||+++|..+.+...+.++.+..+. ..+.+++..+.+.+|||||++++..++..+++.+|++|+|||
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYR-KQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS   79 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence            6899999999999999999999888877777665543 446688888899999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhcC---CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Q 028251           88 ITRRETFNHLSSWLEDARQHAN---PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA  164 (211)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~  164 (211)
                      ++++.++..+..|+..+.....   .+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|+++.
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~  159 (190)
T cd04144          80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV  159 (190)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999988866542   5789999999999977677777778888888889999999999999999999999


Q ss_pred             HHHHHHHhhcc
Q 028251          165 AKILQNIQEGA  175 (211)
Q Consensus       165 ~~~~~~~~~~~  175 (211)
                      +.+..+..++.
T Consensus       160 ~~l~~~~~~~~  170 (190)
T cd04144         160 RALRQQRQGGQ  170 (190)
T ss_pred             HHHHHhhcccC
Confidence            98877777653

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=2.7e-34  Score=217.62  Aligned_cols=168  Identities=26%  Similarity=0.471  Sum_probs=149.9

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ...+||+++|+.|||||+|+++|..+.+...+.++.+..+.. .+.+++..+.+.||||+|++.+..+...+++.+|++|
T Consensus        11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~-~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI   89 (232)
T cd04174          11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA-GLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL   89 (232)
T ss_pred             eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEE-EEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence            467899999999999999999999999999999998877754 5788999999999999999999999999999999999


Q ss_pred             EEEECCCHHHHHH-HHHHHHHHHHhcCCCCeEEEEEecCCCCC------------CCCCCHHHHHHHHHHcCC-cEEEEe
Q 028251           84 LVYDITRRETFNH-LSSWLEDARQHANPNMSIMLVGNKCDLAH------------RRAVSKEEGEQFAKENGL-LFLEAS  149 (211)
Q Consensus        84 ~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~s  149 (211)
                      +|||++++.+|.+ +..|+..+.... ++.|+++|+||+|+.+            ...+..+++++++...++ .|+++|
T Consensus        90 lVyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtS  168 (232)
T cd04174          90 LCFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECS  168 (232)
T ss_pred             EEEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEcc
Confidence            9999999999998 478999887765 4789999999999964            256788999999999998 599999


Q ss_pred             CCCCC-CHHHHHHHHHHHHHHHHhh
Q 028251          150 ARTAQ-NVEEAFIKTAAKILQNIQE  173 (211)
Q Consensus       150 ~~~~~-~i~~~~~~i~~~~~~~~~~  173 (211)
                      |++|. |++++|..+...++++...
T Consensus       169 Aktg~~~V~e~F~~~~~~~~~~~~~  193 (232)
T cd04174         169 AFTSEKSIHSIFRSASLLCLNKLSP  193 (232)
T ss_pred             CCcCCcCHHHHHHHHHHHHHHhccc
Confidence            99997 8999999999988775444

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.5e-35  Score=197.37  Aligned_cols=207  Identities=60%  Similarity=0.976  Sum_probs=187.3

Q ss_pred             CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028251            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      +|.|.+|.+++|+-|+|||.|++.|...+|...-+++.|+++....+.+.+..+++++|||+|+++|+.....+++.+.+
T Consensus         7 nysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaag   86 (215)
T KOG0097|consen    7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG   86 (215)
T ss_pred             chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028251           82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  161 (211)
                      .++|||++.+.++..+..|+...+....++..+++++||.|+...+.+..+++++++.++++.|.++|+++|.++++.|-
T Consensus        87 almvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafl  166 (215)
T KOG0097|consen   87 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFL  166 (215)
T ss_pred             eeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHH
Confidence            99999999999999999999999888888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccccccCCCCCeEEeeccCCCCCCCCCCccccCCCC
Q 028251          162 KTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGC  209 (211)
Q Consensus       162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c  209 (211)
                      ...+.+.+...++..+.+.-++++-...+.-.++.- ..+...+|.+|
T Consensus       167 e~akkiyqniqdgsldlnaaesgvq~k~~~p~~~~l-~se~~~~kd~c  213 (215)
T KOG0097|consen  167 ETAKKIYQNIQDGSLDLNAAESGVQHKPSQPSRTSL-SSEATGAKDQC  213 (215)
T ss_pred             HHHHHHHHhhhcCcccccchhccCcCCCCCCCcccc-ccCCCCccccC
Confidence            999999999999999988888877544443222222 33445566678

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=6.5e-34  Score=214.90  Aligned_cols=164  Identities=35%  Similarity=0.585  Sum_probs=148.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECC-EEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDG-RPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      +||+++|++|||||||+++|.+..+...+.++.+.++....+.+++ ..+.+.|||++|++.+..++..+++.+|++|+|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999999888999999898888888865 578999999999999999999999999999999


Q ss_pred             EECCCHHHHHHHHHHHHHHHHhcC---CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Q 028251           86 YDITRRETFNHLSSWLEDARQHAN---PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK  162 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  162 (211)
                      ||+++++++.++..|+..+.....   .+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|++
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~  160 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ  160 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            999999999999999999877643   35689999999999877778888889999989999999999999999999999


Q ss_pred             HHHHHHHH
Q 028251          163 TAAKILQN  170 (211)
Q Consensus       163 i~~~~~~~  170 (211)
                      |.+.+...
T Consensus       161 l~~~l~~~  168 (215)
T cd04109         161 LAAELLGV  168 (215)
T ss_pred             HHHHHHhc
Confidence            99988764

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=3.8e-34  Score=208.16  Aligned_cols=166  Identities=55%  Similarity=0.986  Sum_probs=152.5

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ++.+||+++|++|+|||||+++|.+..+.+.+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|
T Consensus         1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i   80 (167)
T cd01867           1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII   80 (167)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence            57899999999999999999999999999988888888888777888888899999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Q 028251           84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT  163 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i  163 (211)
                      +|||++++.++..+..|+..+......+.|+++++||+|+.+......+++..++...+.+++++||+++.|++++|+++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  160 (167)
T cd01867          81 LVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTL  160 (167)
T ss_pred             EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999987766689999999999998766677788888888889999999999999999999999


Q ss_pred             HHHHHH
Q 028251          164 AAKILQ  169 (211)
Q Consensus       164 ~~~~~~  169 (211)
                      .+.+..
T Consensus       161 ~~~~~~  166 (167)
T cd01867         161 AKDIKK  166 (167)
T ss_pred             HHHHHh
Confidence            988864

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=3.5e-34  Score=212.32  Aligned_cols=170  Identities=38%  Similarity=0.611  Sum_probs=149.1

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ...+||+++|++|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++|
T Consensus         3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii   81 (189)
T PTZ00369          3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL   81 (189)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence            3468999999999999999999999988877778776666 455778898999999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Q 028251           84 LVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK  162 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  162 (211)
                      +|||++++.++..+..|+..+..... .+.|+++++||+|+.+...+..++...++...+.+++++||+++.|++++|++
T Consensus        82 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~  161 (189)
T PTZ00369         82 CVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYE  161 (189)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHH
Confidence            99999999999999999988876543 57899999999999766666777788888888889999999999999999999


Q ss_pred             HHHHHHHHHhhc
Q 028251          163 TAAKILQNIQEG  174 (211)
Q Consensus       163 i~~~~~~~~~~~  174 (211)
                      |.+.+....++.
T Consensus       162 l~~~l~~~~~~~  173 (189)
T PTZ00369        162 LVREIRKYLKED  173 (189)
T ss_pred             HHHHHHHHhhcc
Confidence            999887665543

>cd04112 Rab26 Rab26 subfamily

Probab=100.00  E-value=4.3e-34  Score=212.19  Aligned_cols=165  Identities=47%  Similarity=0.851  Sum_probs=147.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      +||+++|++|||||||+++|....+.. .+.++.+.++....+.+++..+.+.||||||++++...+..+++.+|++|+|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            589999999999999999999988764 5667777777777788899999999999999999999999999999999999


Q ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHH
Q 028251           86 YDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA  165 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~  165 (211)
                      ||+++++++.++..|+..+......+.|+++++||.|+...+....++...++...+.+++++||++|.|++++|++|.+
T Consensus        81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~  160 (191)
T cd04112          81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK  160 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999999988876668999999999999766667778888888888999999999999999999999998


Q ss_pred             HHHHHH
Q 028251          166 KILQNI  171 (211)
Q Consensus       166 ~~~~~~  171 (211)
                      .+....
T Consensus       161 ~~~~~~  166 (191)
T cd04112         161 ELKHRK  166 (191)
T ss_pred             HHHHhc
Confidence            887653

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=8.3e-34  Score=208.67  Aligned_cols=168  Identities=41%  Similarity=0.790  Sum_probs=150.6

Q ss_pred             CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEEC----------CEEEEEEEEeCCCccchhhch
Q 028251            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID----------GRPIKLQIWDTAGQESFRSIT   72 (211)
Q Consensus         3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~l~D~~G~~~~~~~~   72 (211)
                      +++.+||+++|++|||||||+++|..+.+...+.++.+.++....+.+.          +..+.+.|||+||++.+...+
T Consensus         1 ~~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~   80 (180)
T cd04127           1 YDYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLT   80 (180)
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHH
Confidence            4688999999999999999999999999988888888888877666554          456889999999999999999


Q ss_pred             HHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCC
Q 028251           73 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASAR  151 (211)
Q Consensus        73 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~  151 (211)
                      ..+++.+|++|+|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..++...+++++++||+
T Consensus        81 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak  160 (180)
T cd04127          81 TAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAA  160 (180)
T ss_pred             HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCC
Confidence            999999999999999999999999999999887654 3578999999999998777778888899999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHH
Q 028251          152 TAQNVEEAFIKTAAKILQN  170 (211)
Q Consensus       152 ~~~~i~~~~~~i~~~~~~~  170 (211)
                      ++.|++++|+.|.+.+.++
T Consensus       161 ~~~~v~~l~~~l~~~~~~~  179 (180)
T cd04127         161 TGTNVEKAVERLLDLVMKR  179 (180)
T ss_pred             CCCCHHHHHHHHHHHHHhh
Confidence            9999999999999888654

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=6.9e-34  Score=209.01  Aligned_cols=164  Identities=28%  Similarity=0.513  Sum_probs=146.8

Q ss_pred             CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028251            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      ....+||+++|+.|+|||||+++|..+.+...+.++.+..+. ..+.+++..+.+.+|||+|++.+..++..+++.+|++
T Consensus         2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~   80 (182)
T cd04172           2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   80 (182)
T ss_pred             CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence            356789999999999999999999999998888888876664 5578899999999999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEecCCCCC------------CCCCCHHHHHHHHHHcCC-cEEEE
Q 028251           83 LLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH------------RRAVSKEEGEQFAKENGL-LFLEA  148 (211)
Q Consensus        83 i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~  148 (211)
                      |+|||++++.+|.++ ..|+..+.... ++.|+++|+||+|+.+            ...++.+++++++++.++ +|+++
T Consensus        81 ilvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~  159 (182)
T cd04172          81 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  159 (182)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEEC
Confidence            999999999999997 78999987765 5799999999999964            245788999999999996 89999


Q ss_pred             eCCCCCC-HHHHHHHHHHHHH
Q 028251          149 SARTAQN-VEEAFIKTAAKIL  168 (211)
Q Consensus       149 s~~~~~~-i~~~~~~i~~~~~  168 (211)
                      ||+++.| |+++|+.+++.++
T Consensus       160 SAk~~~n~v~~~F~~~~~~~~  180 (182)
T cd04172         160 SALQSENSVRDIFHVATLACV  180 (182)
T ss_pred             CcCCCCCCHHHHHHHHHHHHh
Confidence            9999998 9999999888643

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd01866 Rab2 Rab2 subfamily

Probab=100.00  E-value=1.7e-33  Score=204.85  Aligned_cols=167  Identities=85%  Similarity=1.327  Sum_probs=153.7

Q ss_pred             CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028251            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      |++.+||+++|++|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||++++..+...+++.+|++
T Consensus         1 ~~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   80 (168)
T cd01866           1 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA   80 (168)
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence            67889999999999999999999999998888888888888888888898889999999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Q 028251           83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK  162 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  162 (211)
                      ++|||++++.++..+..|+..+.....++.|+++++||.|+.+...+..++...++...++.++++|++++.|++++|.+
T Consensus        81 l~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~  160 (168)
T cd01866          81 LLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFIN  160 (168)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999998876678999999999999876677888888898889999999999999999999999


Q ss_pred             HHHHHHH
Q 028251          163 TAAKILQ  169 (211)
Q Consensus       163 i~~~~~~  169 (211)
                      +.+.+.+
T Consensus       161 ~~~~~~~  167 (168)
T cd01866         161 TAKEIYE  167 (168)
T ss_pred             HHHHHHh
Confidence            9888754

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=1.8e-33  Score=204.29  Aligned_cols=164  Identities=54%  Similarity=0.949  Sum_probs=150.3

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      +.+||+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|+
T Consensus         1 ~~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~   80 (166)
T cd01869           1 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII   80 (166)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEE
Confidence            35899999999999999999999999888888888888888888888888999999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Q 028251           85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA  164 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~  164 (211)
                      |||+++++++..+..|+..+......+.|+++++||+|+.....+..+++..++...+++++++||++|.|++++|..|.
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  160 (166)
T cd01869          81 VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMA  160 (166)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHH
Confidence            99999999999999999998877656799999999999977777778888999998999999999999999999999998


Q ss_pred             HHHH
Q 028251          165 AKIL  168 (211)
Q Consensus       165 ~~~~  168 (211)
                      +.+.
T Consensus       161 ~~~~  164 (166)
T cd01869         161 REIK  164 (166)
T ss_pred             HHHH
Confidence            8775

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=2e-33  Score=205.24  Aligned_cols=166  Identities=33%  Similarity=0.549  Sum_probs=148.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+++|.+|||||||+++|..+.+...+.++.+..+. ..+.+++..+.+.+||+||++.+..++..++..+|++|+|
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv   80 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYK-QQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC   80 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEE-EEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence            479999999999999999999999998888888775553 4477889899999999999999999999999999999999


Q ss_pred             EECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Q 028251           86 YDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA  164 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~  164 (211)
                      ||++++.+|..+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..+++..+++++++||++|.|++++|++|.
T Consensus        81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~  160 (172)
T cd04141          81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV  160 (172)
T ss_pred             EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence            99999999999999888887654 35799999999999987777888889999998999999999999999999999999


Q ss_pred             HHHHHHHh
Q 028251          165 AKILQNIQ  172 (211)
Q Consensus       165 ~~~~~~~~  172 (211)
                      +.+.+...
T Consensus       161 ~~~~~~~~  168 (172)
T cd04141         161 REIRRKES  168 (172)
T ss_pred             HHHHHhcc
Confidence            88876443

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=1.3e-33  Score=206.33  Aligned_cols=159  Identities=33%  Similarity=0.647  Sum_probs=143.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+++|.+|+|||+|+.+|..+.+...+.++.+..+. ..+.+++..+.+.+|||+|++++..++..+++.+|++|+||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~-~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy   80 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   80 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeE-EEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence            68999999999999999999999998888899887664 44678999999999999999999999999999999999999


Q ss_pred             ECCCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEecCCCCCCC----------CCCHHHHHHHHHHcCC-cEEEEeCCCCC
Q 028251           87 DITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAHRR----------AVSKEEGEQFAKENGL-LFLEASARTAQ  154 (211)
Q Consensus        87 d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~-~~~~~s~~~~~  154 (211)
                      |++++.+|+++ ..|+..+.... .+.|+++|+||+|+.+..          .+..+++..++...+. .++++||++|.
T Consensus        81 d~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~  159 (176)
T cd04133          81 SLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ  159 (176)
T ss_pred             EcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence            99999999998 68999887665 479999999999996542          4778899999999988 59999999999


Q ss_pred             CHHHHHHHHHHHH
Q 028251          155 NVEEAFIKTAAKI  167 (211)
Q Consensus       155 ~i~~~~~~i~~~~  167 (211)
                      ||+++|+.+.+.+
T Consensus       160 nV~~~F~~~~~~~  172 (176)
T cd04133         160 NVKAVFDAAIKVV  172 (176)
T ss_pred             CHHHHHHHHHHHH
Confidence            9999999999876

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=2.9e-33  Score=210.99  Aligned_cols=165  Identities=27%  Similarity=0.503  Sum_probs=142.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+|+|+.|||||+|+++|..+.+...+.++.+..+. ..+.+++..+.+.||||+|++.+..++..+++.+|++|+|
T Consensus         1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv   79 (222)
T cd04173           1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC   79 (222)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence            379999999999999999999999999888898877665 4577899999999999999999999999999999999999


Q ss_pred             EECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-cEEEEeCC
Q 028251           86 YDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENGL-LFLEASAR  151 (211)
Q Consensus        86 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~  151 (211)
                      ||++++++|+++. .|...+... .++.|+++|+||+|+.+.            ..+..+++..++++.++ .|+++||+
T Consensus        80 fdis~~~Sf~~i~~~w~~~~~~~-~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk  158 (222)
T cd04173          80 FDISRPETLDSVLKKWQGETQEF-CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSR  158 (222)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCC
Confidence            9999999999985 565555443 458999999999999642            13677889999999996 89999999


Q ss_pred             CCCC-HHHHHHHHHHHHHHHHh
Q 028251          152 TAQN-VEEAFIKTAAKILQNIQ  172 (211)
Q Consensus       152 ~~~~-i~~~~~~i~~~~~~~~~  172 (211)
                      ++.+ |+++|+.+....+.+..
T Consensus       159 ~~~~~V~~~F~~~~~~~~~~~~  180 (222)
T cd04173         159 SSERSVRDVFHVATVASLGRGH  180 (222)
T ss_pred             cCCcCHHHHHHHHHHHHHhccC
Confidence            9885 99999999888766544

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=4.2e-33  Score=202.23  Aligned_cols=162  Identities=43%  Similarity=0.777  Sum_probs=147.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+++|++|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            79999999999999999999999998888888888887777777888899999999999999999999999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHH
Q 028251           87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK  166 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~  166 (211)
                      |++++++++.+..|+..+........|+++++||+|+.+.+....++..+++...+++++++||+++.|++++|+++.+.
T Consensus        82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  161 (165)
T cd01865          82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI  161 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            99999999999999999877665678999999999998776677788888888888999999999999999999999887


Q ss_pred             HH
Q 028251          167 IL  168 (211)
Q Consensus       167 ~~  168 (211)
                      +.
T Consensus       162 ~~  163 (165)
T cd01865         162 IC  163 (165)
T ss_pred             HH
Confidence            64

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=3.2e-33  Score=202.14  Aligned_cols=160  Identities=43%  Similarity=0.838  Sum_probs=147.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      ++|+++|++|+|||||+++|..+.+.+.+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            48999999999999999999999998888888888888888888998899999999999999999999999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHH
Q 028251           87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK  166 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~  166 (211)
                      |++++++|..+..|+..+......+.|+++++||.|+...+.+..+++..+++..+.+++++||++|.|++++|.+|.++
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117          81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence            99999999999999998877655579999999999998777778888999998888999999999999999999999865

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd01868 Rab11_like Rab11-like

Probab=100.00  E-value=5e-33  Score=201.74  Aligned_cols=164  Identities=58%  Similarity=0.951  Sum_probs=150.3

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ++.+||+++|++|||||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.++++|
T Consensus         1 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   80 (165)
T cd01868           1 DYLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   80 (165)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEE
Confidence            46789999999999999999999999998888888888888888888988889999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Q 028251           84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT  163 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i  163 (211)
                      +|||++++.++..+..|+..+......+.|+++++||.|+...+....++...++...+++++++||++|.|++++|++|
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  160 (165)
T cd01868          81 LVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQL  160 (165)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence            99999999999999999999887766579999999999998777777888888888888999999999999999999999


Q ss_pred             HHHH
Q 028251          164 AAKI  167 (211)
Q Consensus       164 ~~~~  167 (211)
                      .+.+
T Consensus       161 ~~~i  164 (165)
T cd01868         161 LTEI  164 (165)
T ss_pred             HHHh
Confidence            8765

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=2.5e-33  Score=205.55  Aligned_cols=161  Identities=30%  Similarity=0.529  Sum_probs=143.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      ++||+++|++|||||||+++|..+.+...+.++.+..+. ..+.+++..+.+.+|||+|++.+..+...+++.+|++|+|
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv   79 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC   79 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence            479999999999999999999999998888888877664 4578899999999999999999999999999999999999


Q ss_pred             EECCCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEecCCCCC------------CCCCCHHHHHHHHHHcCC-cEEEEeCC
Q 028251           86 YDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH------------RRAVSKEEGEQFAKENGL-LFLEASAR  151 (211)
Q Consensus        86 ~d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~s~~  151 (211)
                      ||++++++|+++ ..|+..+.... ++.|+++|+||+|+.+            ...+..+++.+++...++ +|+++||+
T Consensus        80 fdit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~  158 (178)
T cd04131          80 FDISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF  158 (178)
T ss_pred             EECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence            999999999996 78999887765 4899999999999964            235788999999999997 79999999


Q ss_pred             CCCC-HHHHHHHHHHHHH
Q 028251          152 TAQN-VEEAFIKTAAKIL  168 (211)
Q Consensus       152 ~~~~-i~~~~~~i~~~~~  168 (211)
                      +|.+ ++++|..+.+..+
T Consensus       159 ~~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         159 TSEKSVRDIFHVATMACL  176 (178)
T ss_pred             cCCcCHHHHHHHHHHHHh
Confidence            9995 9999999988654

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1e-34  Score=199.38  Aligned_cols=170  Identities=35%  Similarity=0.701  Sum_probs=160.6

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      +.+||+++|..=+|||||+-+++..+|......+..-.+..+.+++.+....+.||||+|+++|.++-+.|++..+++++
T Consensus        12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalL   91 (218)
T KOG0088|consen   12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALL   91 (218)
T ss_pred             eeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceEE
Confidence            67999999999999999999999999999888887777888888899999999999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Q 028251           85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA  164 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~  164 (211)
                      |||++|+.+|+.+..|..+++......+-++||+||+|+.+++.+..++++.++...++.++++||+++.||.++|+.+.
T Consensus        92 VyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~Lt  171 (218)
T KOG0088|consen   92 VYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFESLT  171 (218)
T ss_pred             EEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHHHH
Confidence            99999999999999999999998888899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhc
Q 028251          165 AKILQNIQEG  174 (211)
Q Consensus       165 ~~~~~~~~~~  174 (211)
                      +.+++.....
T Consensus       172 ~~MiE~~s~~  181 (218)
T KOG0088|consen  172 AKMIEHSSQR  181 (218)
T ss_pred             HHHHHHhhhc
Confidence            9998877543

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=4.7e-33  Score=201.23  Aligned_cols=161  Identities=40%  Similarity=0.753  Sum_probs=153.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEE
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD   87 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   87 (211)
                      ||+++|+.+||||||+++|.+..+.+.+.++.+.+.....+.+++..+.+.+||++|++.+..+...++..+|++|+|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999999999999998899999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 028251           88 ITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI  167 (211)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~  167 (211)
                      +++++++..+..|+..+......+.|++|++||.|+.+.+.++.++++.++..++.+|+++|++++.++.++|..+++.+
T Consensus        81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i  160 (162)
T PF00071_consen   81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI  160 (162)
T ss_dssp             TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            99999999999999999988876799999999999988788999999999999999999999999999999999999887


Q ss_pred             H
Q 028251          168 L  168 (211)
Q Consensus       168 ~  168 (211)
                      .
T Consensus       161 ~  161 (162)
T PF00071_consen  161 L  161 (162)
T ss_dssp             H
T ss_pred             h
Confidence            5

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04118 Rab24 Rab24 subfamily

Probab=100.00  E-value=9.3e-33  Score=205.34  Aligned_cols=165  Identities=33%  Similarity=0.599  Sum_probs=144.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      +||+|+|++|+|||||+++|+.+.+.. .+.++.+..+....+.+++..+.+.+||++|++++..++..++..+|++|+|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            589999999999999999999998875 5777878888777888999999999999999999999999999999999999


Q ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCC----CCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028251           86 YDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR----RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  161 (211)
                      ||++++.++..+..|+..+.... .+.|+++|+||+|+.+.    ..+..+++..++...+++++++||+++.|++++|+
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  159 (193)
T cd04118          81 YDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ  159 (193)
T ss_pred             EECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999998887653 47999999999998532    34455667788888889999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 028251          162 KTAAKILQNIQ  172 (211)
Q Consensus       162 ~i~~~~~~~~~  172 (211)
                      .|.+.+.++..
T Consensus       160 ~i~~~~~~~~~  170 (193)
T cd04118         160 KVAEDFVSRAN  170 (193)
T ss_pred             HHHHHHHHhcc
Confidence            99999976654

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=6.8e-33  Score=201.18  Aligned_cols=162  Identities=33%  Similarity=0.703  Sum_probs=147.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+++|++|||||||+++|++..+.+.+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|++|+||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            58999999999999999999999998888899898888888888999999999999999999999999999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhcC-----CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028251           87 DITRRETFNHLSSWLEDARQHAN-----PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  161 (211)
                      |++++.++..+..|+..+.....     .+.|+++++||+|+.+......++...++...+++++++||+++.|++++|+
T Consensus        81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  160 (168)
T cd04119          81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ  160 (168)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            99999999999999999877653     4799999999999976566777888888888889999999999999999999


Q ss_pred             HHHHHHH
Q 028251          162 KTAAKIL  168 (211)
Q Consensus       162 ~i~~~~~  168 (211)
                      +|.+.++
T Consensus       161 ~l~~~l~  167 (168)
T cd04119         161 TLFSSIV  167 (168)
T ss_pred             HHHHHHh
Confidence            9998775

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>PLN03118 Rab family protein; Provisional

Probab=100.00  E-value=3.1e-32  Score=205.27  Aligned_cols=167  Identities=51%  Similarity=0.833  Sum_probs=144.9

Q ss_pred             CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028251            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      +...+||+|+|++|+|||||+++|.+..+. .+.++.+.++....+.+++..+.+.||||||++.+..++..+++.+|++
T Consensus        11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~   89 (211)
T PLN03118         11 YDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGI   89 (211)
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence            456789999999999999999999988764 4567778888888888888889999999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHHH-HHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHH
Q 028251           83 LLVYDITRRETFNHLSS-WLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF  160 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~-~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~  160 (211)
                      |+|||+++++++..+.. |...+.... ..+.|+++|+||+|+........++...++...++.|+++||+++.|++++|
T Consensus        90 vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~  169 (211)
T PLN03118         90 ILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCF  169 (211)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999976 444444332 2468999999999998766777788888888889999999999999999999


Q ss_pred             HHHHHHHHHH
Q 028251          161 IKTAAKILQN  170 (211)
Q Consensus       161 ~~i~~~~~~~  170 (211)
                      ++|.+.+...
T Consensus       170 ~~l~~~~~~~  179 (211)
T PLN03118        170 EELALKIMEV  179 (211)
T ss_pred             HHHHHHHHhh
Confidence            9999888764

>cd01864 Rab19 Rab19 subfamily

Probab=100.00  E-value=1.2e-32  Score=199.87  Aligned_cols=163  Identities=48%  Similarity=0.887  Sum_probs=147.6

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ++.+||+++|++|+|||||+++|..+.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus         1 ~~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~l   80 (165)
T cd01864           1 DFLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAI   80 (165)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence            46799999999999999999999999888888888888888888888888889999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEeCCCCCCHHHHHHH
Q 028251           84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIK  162 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~~~  162 (211)
                      +|||++++.++..+..|+..+......+.|+++|+||+|+...++...+++..+++..+. .++++|+++|.|++++|++
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~  160 (165)
T cd01864          81 IAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLL  160 (165)
T ss_pred             EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHH
Confidence            999999999999999999999876667899999999999987777777888888888775 6899999999999999999


Q ss_pred             HHHH
Q 028251          163 TAAK  166 (211)
Q Consensus       163 i~~~  166 (211)
                      +.+.
T Consensus       161 l~~~  164 (165)
T cd01864         161 MATE  164 (165)
T ss_pred             HHHh
Confidence            8865

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=1.1e-32  Score=204.55  Aligned_cols=163  Identities=29%  Similarity=0.571  Sum_probs=142.6

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ..+||+++|+.|||||||+++|..+.+...+.++.+..+. ..+.+++..+.+.+|||+|++.+..++..+++.+|++|+
T Consensus         2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il   80 (191)
T cd01875           2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII   80 (191)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence            4589999999999999999999999998888888876654 346788999999999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEecCCCCCCC------------CCCHHHHHHHHHHcC-CcEEEEeC
Q 028251           85 VYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRR------------AVSKEEGEQFAKENG-LLFLEASA  150 (211)
Q Consensus        85 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~-~~~~~~s~  150 (211)
                      |||++++.+|+.+. .|+..+.... .+.|+++|+||.|+.+..            .+..+++..++...+ .+++++||
T Consensus        81 vydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA  159 (191)
T cd01875          81 CFSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA  159 (191)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence            99999999999997 5877776544 489999999999996532            356678888998888 58999999


Q ss_pred             CCCCCHHHHHHHHHHHHHH
Q 028251          151 RTAQNVEEAFIKTAAKILQ  169 (211)
Q Consensus       151 ~~~~~i~~~~~~i~~~~~~  169 (211)
                      ++|.|++++|+.+.+.+..
T Consensus       160 k~g~~v~e~f~~l~~~~~~  178 (191)
T cd01875         160 LNQDGVKEVFAEAVRAVLN  178 (191)
T ss_pred             CCCCCHHHHHHHHHHHHhc
Confidence            9999999999999988743

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=1.5e-32  Score=202.24  Aligned_cols=162  Identities=27%  Similarity=0.503  Sum_probs=142.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+++|+.|||||||+++|+.+.+.+.+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            58999999999999999999999998888999999988888889999999999999999999999999999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCC-----CCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028251           87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR-----RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  161 (211)
                      |++++.++.++..|+..+........| ++|+||+|+...     .....++...++...+.+++++||++|.|++++|+
T Consensus        81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~  159 (182)
T cd04128          81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK  159 (182)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999988776554567 678999999521     11224567778888889999999999999999999


Q ss_pred             HHHHHHHH
Q 028251          162 KTAAKILQ  169 (211)
Q Consensus       162 ~i~~~~~~  169 (211)
                      ++.+.+.+
T Consensus       160 ~l~~~l~~  167 (182)
T cd04128         160 IVLAKAFD  167 (182)
T ss_pred             HHHHHHHh
Confidence            99988865

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04132 Rho4_like Rho4-like subfamily

Probab=100.00  E-value=2.2e-32  Score=202.38  Aligned_cols=164  Identities=31%  Similarity=0.567  Sum_probs=140.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEEC-CEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID-GRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      +||+|+|++|+|||||+++|.++.+...+.++.+..+... +... +..+.+.+|||||++.+..++..++..+|++|+|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   79 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC   79 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence            5899999999999999999999999888878777666443 4454 7788999999999999999999999999999999


Q ss_pred             EECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEecCCCCCC----CCCCHHHHHHHHHHcCC-cEEEEeCCCCCCHHHH
Q 028251           86 YDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR----RAVSKEEGEQFAKENGL-LFLEASARTAQNVEEA  159 (211)
Q Consensus        86 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~  159 (211)
                      ||++++.+++++. .|+..+.... .+.|+++++||.|+...    ..+..++..+++...+. +++++||++|.|++++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~  158 (187)
T cd04132          80 YAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV  158 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence            9999999999986 4777665443 57999999999998643    24567788889988888 8999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 028251          160 FIKTAAKILQNIQ  172 (211)
Q Consensus       160 ~~~i~~~~~~~~~  172 (211)
                      |+.+.+.+.....
T Consensus       159 f~~l~~~~~~~~~  171 (187)
T cd04132         159 FDTAIEEALKKEG  171 (187)
T ss_pred             HHHHHHHHHhhhh
Confidence            9999999876554

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04113 Rab4 Rab4 subfamily

Probab=100.00  E-value=2.5e-32  Score=197.25  Aligned_cols=160  Identities=61%  Similarity=1.031  Sum_probs=147.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+||
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            58999999999999999999999988888888888888888888888899999999999999999999999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHH
Q 028251           87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK  166 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~  166 (211)
                      |++++.++..+..|+..+.....++.|+++++||.|+.....+..++...++...++.++++|++++.|++++|+++.+.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~  160 (161)
T cd04113          81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            99999999999999998877776789999999999998777778888899999999999999999999999999998865

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>smart00175 RAB Rab subfamily of small GTPases

Probab=100.00  E-value=4.7e-32  Score=196.15  Aligned_cols=163  Identities=61%  Similarity=0.983  Sum_probs=149.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+++|++|+|||||+++|.+..+.....++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            58999999999999999999999988888888888888888888988889999999999999999999999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHH
Q 028251           87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK  166 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~  166 (211)
                      |++++.+++.+..|+..+......+.|+++++||+|+........+.+..++...+++++++|++++.|++++|+.|.+.
T Consensus        81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~  160 (164)
T smart00175       81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE  160 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999887766689999999999997766677788888888889999999999999999999999988


Q ss_pred             HHH
Q 028251          167 ILQ  169 (211)
Q Consensus       167 ~~~  169 (211)
                      +.+
T Consensus       161 ~~~  163 (164)
T smart00175      161 ILK  163 (164)
T ss_pred             Hhh
Confidence            754

Rab GTPases are implicated in vesicle trafficking.

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=2.8e-32  Score=197.27  Aligned_cols=160  Identities=38%  Similarity=0.631  Sum_probs=140.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+++|++|||||||++++..+.+...+.++.+ ......+.+++..+.+.+|||||++++..++..+++.+|++++||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY   80 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence            6999999999999999999999988777777755 344455778888899999999999999999999999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHH
Q 028251           87 DITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA  165 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~  165 (211)
                      |++++.++..+..|+..+..... .+.|+++++||+|+.+.+.+..++...++...+.+++++||+++.|++++|++|.+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd04136          81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVR  160 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence            99999999999999988876543 57999999999999766666777777888888889999999999999999999987


Q ss_pred             HH
Q 028251          166 KI  167 (211)
Q Consensus       166 ~~  167 (211)
                      .+
T Consensus       161 ~~  162 (163)
T cd04136         161 QI  162 (163)
T ss_pred             hc
Confidence            54

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=8.4e-32  Score=196.30  Aligned_cols=162  Identities=37%  Similarity=0.660  Sum_probs=143.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEE
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD   87 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   87 (211)
                      ||+++|++|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            79999999999999999999999998999999989888888889989999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCC--CCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Q 028251           88 ITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRA--VSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA  164 (211)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~  164 (211)
                      +++++++..+..|+..+..... ...|+++|+||.|+.+...  ...+++..++.+.+.+++++||+++.|++++|+.|.
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~  161 (170)
T cd04108          82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA  161 (170)
T ss_pred             CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            9999999999999998865543 3578999999999965433  234566777888888999999999999999999998


Q ss_pred             HHHHH
Q 028251          165 AKILQ  169 (211)
Q Consensus       165 ~~~~~  169 (211)
                      +.+.+
T Consensus       162 ~~~~~  166 (170)
T cd04108         162 ALTFE  166 (170)
T ss_pred             HHHHH
Confidence            88743

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=5.5e-32  Score=198.14  Aligned_cols=160  Identities=27%  Similarity=0.549  Sum_probs=139.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+++|.+|+|||||+++|..+.+...+.++.+..+. ..+.+++..+.+.|||++|++.+..++..+++.+|++|+|
T Consensus         1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv   79 (175)
T cd01874           1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   79 (175)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence            479999999999999999999999998888888877664 3467888889999999999999999999999999999999


Q ss_pred             EECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcC-CcEEEEeCC
Q 028251           86 YDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENG-LLFLEASAR  151 (211)
Q Consensus        86 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~s~~  151 (211)
                      ||++++++++.+. .|+..+.... .+.|+++++||+|+...            +.+..+++.+++++.+ ..++++||+
T Consensus        80 ~d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~  158 (175)
T cd01874          80 FSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL  158 (175)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence            9999999999997 5877776654 47999999999998543            4566778888888877 689999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 028251          152 TAQNVEEAFIKTAAKI  167 (211)
Q Consensus       152 ~~~~i~~~~~~i~~~~  167 (211)
                      +|.|++++|+.++..+
T Consensus       159 tg~~v~~~f~~~~~~~  174 (175)
T cd01874         159 TQKGLKNVFDEAILAA  174 (175)
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999988754

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04106 Rab23_lke Rab23-like subfamily

Probab=100.00  E-value=8.5e-32  Score=194.60  Aligned_cols=159  Identities=36%  Similarity=0.623  Sum_probs=143.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEEC--CEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID--GRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      +||+++|++|+|||||+++|..+.+...+.++.+.++....+.+.  +..+.+.+||+||++.+..++..+++.+|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            589999999999999999999999888888888888877777776  778899999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Q 028251           85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA  164 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~  164 (211)
                      |||+++++++..+..|+..+.... .+.|+++++||.|+..+..+..+++..++...+++++++|++++.|++++|++|.
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA  159 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999999999998886544 4899999999999977777777888889999999999999999999999999887


Q ss_pred             HH
Q 028251          165 AK  166 (211)
Q Consensus       165 ~~  166 (211)
                      +.
T Consensus       160 ~~  161 (162)
T cd04106         160 EK  161 (162)
T ss_pred             Hh
Confidence            53

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=8.3e-32  Score=195.15  Aligned_cols=160  Identities=39%  Similarity=0.642  Sum_probs=141.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+++|.+|||||||+++++.+.+...+.++.+..+. ..+.+++..+.+.+|||||++.+..++..+++.+|++|+||
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY   80 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEE-EEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence            68999999999999999999988887777777665553 45778888899999999999999999999999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHH
Q 028251           87 DITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA  165 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~  165 (211)
                      |++++.++..+..|+..+.... ..+.|+++++||+|+.+...+..++...+++..+.+++++||+++.|++++|.+|.+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  160 (164)
T cd04175          81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVR  160 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHH
Confidence            9999999999999988886643 357999999999999876666777778888888899999999999999999999987


Q ss_pred             HH
Q 028251          166 KI  167 (211)
Q Consensus       166 ~~  167 (211)
                      .+
T Consensus       161 ~l  162 (164)
T cd04175         161 QI  162 (164)
T ss_pred             Hh
Confidence            65

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=1.2e-31  Score=194.76  Aligned_cols=160  Identities=32%  Similarity=0.598  Sum_probs=141.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+++|++|||||||+++++...+...+.++.+.++....+..++..+.+.+|||+|++.+..++..++..+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            58999999999999999999988888888888888887777777888899999999999999999999999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHH
Q 028251           87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK  166 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~  166 (211)
                      |+++++++..+..|+..+..... +.|+++++||+|+.+. ... .+..+++...+.+++++||++|.|++++|++|.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  157 (166)
T cd00877          81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKDR-KVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK  157 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhcccc-cCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence            99999999999999999987765 8999999999999743 333 33456666778899999999999999999999988


Q ss_pred             HHH
Q 028251          167 ILQ  169 (211)
Q Consensus       167 ~~~  169 (211)
                      +.+
T Consensus       158 ~~~  160 (166)
T cd00877         158 LLG  160 (166)
T ss_pred             HHh
Confidence            864

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04116 Rab9 Rab9 subfamily

Probab=100.00  E-value=1.9e-31  Score=194.37  Aligned_cols=163  Identities=39%  Similarity=0.680  Sum_probs=145.2

Q ss_pred             CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028251            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      .+..+||+++|++|+|||||+++|.++.+.+.+.++.+.++....+.+++..+.+.|||+||++.+..++..+++.+|++
T Consensus         2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   81 (170)
T cd04116           2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC   81 (170)
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence            35789999999999999999999999999888888888888777888899999999999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcC----CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEeCCCCCCHH
Q 028251           83 LLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVE  157 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~  157 (211)
                      |+|||+++++++..+..|+..+.....    .+.|+++++||.|+. .+....+++.+++...+. +++++||+++.|+.
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~  160 (170)
T cd04116          82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVA  160 (170)
T ss_pred             EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHH
Confidence            999999999999999999888765442    468999999999986 445677888889888874 79999999999999


Q ss_pred             HHHHHHHHH
Q 028251          158 EAFIKTAAK  166 (211)
Q Consensus       158 ~~~~~i~~~  166 (211)
                      ++|+.+++.
T Consensus       161 ~~~~~~~~~  169 (170)
T cd04116         161 AAFEEAVRR  169 (170)
T ss_pred             HHHHHHHhh
Confidence            999998864

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=1.1e-31  Score=203.03  Aligned_cols=165  Identities=31%  Similarity=0.534  Sum_probs=146.1

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      +..+||+++|.+|||||||+++++.+.+...+.++.+.++....+..++..+.+.+|||+|++.+..++..+++.+|++|
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            46789999999999999999999999998888899898888877778888899999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Q 028251           84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT  163 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i  163 (211)
                      +|||++++.++..+..|+..+.... .+.|+++|+||+|+.+. ....++. .++...++.|+++||++|.|++++|++|
T Consensus        91 lvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~~-~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l  167 (219)
T PLN03071         91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (219)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhhc-cCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence            9999999999999999999987664 58999999999999643 3334444 6777788899999999999999999999


Q ss_pred             HHHHHHHH
Q 028251          164 AAKILQNI  171 (211)
Q Consensus       164 ~~~~~~~~  171 (211)
                      .+.+.+..
T Consensus       168 ~~~~~~~~  175 (219)
T PLN03071        168 ARKLAGDP  175 (219)
T ss_pred             HHHHHcCc
Confidence            99887553

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.4e-34  Score=195.52  Aligned_cols=173  Identities=40%  Similarity=0.748  Sum_probs=159.4

Q ss_pred             CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEEC---------CEEEEEEEEeCCCccchhhch
Q 028251            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID---------GRPIKLQIWDTAGQESFRSIT   72 (211)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~l~D~~G~~~~~~~~   72 (211)
                      +|+|.+|.+.+|++|+|||+|+.++.+++|......++|+++..+.+-++         +..+.+++|||+|+++|+++.
T Consensus         5 dydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLT   84 (219)
T KOG0081|consen    5 DYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLT   84 (219)
T ss_pred             cHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHH
Confidence            58899999999999999999999999999999999999999998877662         456889999999999999999


Q ss_pred             HHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCC
Q 028251           73 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASAR  151 (211)
Q Consensus        73 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~  151 (211)
                      .++++.+=+++++||+++..+|.+++.|+..++.+.- .+..+++++||+|+++.+.++.+++.+++.+.++||+++||-
T Consensus        85 TAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~  164 (219)
T KOG0081|consen   85 TAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSAC  164 (219)
T ss_pred             HHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccc
Confidence            9999999999999999999999999999999876553 466688899999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhc
Q 028251          152 TAQNVEEAFIKTAAKILQNIQEG  174 (211)
Q Consensus       152 ~~~~i~~~~~~i~~~~~~~~~~~  174 (211)
                      +|.++++..+.++..++++.+.-
T Consensus       165 tg~Nv~kave~LldlvM~Rie~~  187 (219)
T KOG0081|consen  165 TGTNVEKAVELLLDLVMKRIEQC  187 (219)
T ss_pred             cCcCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988753

>cd04124 RabL2 RabL2 subfamily

Probab=100.00  E-value=2.9e-31  Score=191.88  Aligned_cols=160  Identities=32%  Similarity=0.553  Sum_probs=140.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+++|.+|||||||+++|....+.+.+.++.+.++......+++..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999998888777777777777788888999999999999999999999999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHH
Q 028251           87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK  166 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~  166 (211)
                      |++++.++..+..|+..+.... .+.|+++++||+|+...   ..++...++...+++++++||++|.|++++|+.+.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  156 (161)
T cd04124          81 DVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL  156 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            9999999999999998886643 47899999999998432   1244556666678899999999999999999999988


Q ss_pred             HHHH
Q 028251          167 ILQN  170 (211)
Q Consensus       167 ~~~~  170 (211)
                      +.++
T Consensus       157 ~~~~  160 (161)
T cd04124         157 AVSY  160 (161)
T ss_pred             HHhc
Confidence            8764

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04140 ARHI_like ARHI subfamily

Probab=100.00  E-value=2.2e-31  Score=193.23  Aligned_cols=159  Identities=33%  Similarity=0.508  Sum_probs=138.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+++|++|+|||||+++++++.+...+.++.+..+ ...+..+...+.+.+||+||++.+..++..+++.+|++|+||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            7899999999999999999999998877777765444 344567778889999999999999998899999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhcC---CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Q 028251           87 DITRRETFNHLSSWLEDARQHAN---PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT  163 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i  163 (211)
                      |+++++++..+..|+..+.....   .+.|+++|+||+|+...+.+..+++..++...++.++++||++|.|++++|++|
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l  160 (165)
T cd04140          81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL  160 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence            99999999999999887766532   579999999999997766677777788888888899999999999999999998


Q ss_pred             HHH
Q 028251          164 AAK  166 (211)
Q Consensus       164 ~~~  166 (211)
                      ...
T Consensus       161 ~~~  163 (165)
T cd04140         161 LNL  163 (165)
T ss_pred             Hhc
Confidence            753

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=100.00  E-value=2.2e-31  Score=192.81  Aligned_cols=161  Identities=41%  Similarity=0.649  Sum_probs=140.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+++|++|||||||+++|.+..+...+.++.+.. ....+.+++..+.+.+||+||++++...+..+++.+|++++||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDS-YRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhh-EEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence            489999999999999999999998887777765533 3455677888899999999999999999999999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHH
Q 028251           87 DITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA  165 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~  165 (211)
                      |+++++++..+..|+..+..... .+.|+++++||+|+.+......++...++...+.+++++||+++.|++++|++|.+
T Consensus        80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  159 (164)
T smart00173       80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence            99999999999999888766543 57899999999999776666777888888888899999999999999999999987


Q ss_pred             HHH
Q 028251          166 KIL  168 (211)
Q Consensus       166 ~~~  168 (211)
                      .+.
T Consensus       160 ~~~  162 (164)
T smart00173      160 EIR  162 (164)
T ss_pred             HHh
Confidence            654

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd01861 Rab6 Rab6 subfamily

Probab=100.00  E-value=3.3e-31  Score=191.29  Aligned_cols=160  Identities=41%  Similarity=0.745  Sum_probs=145.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      .||+++|+++||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+||
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            48999999999999999999999988888888888888888888888889999999999999999999999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHH
Q 028251           87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK  166 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~  166 (211)
                      |+++++++..+..|+..+......+.|+++++||+|+.+......++...++...+++++++|++++.|+++++++|.+.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861          81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA  160 (161)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence            99999999999999998876654579999999999997666677788888888888999999999999999999998764

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04176 Rap2 Rap2 subgroup

Probab=100.00  E-value=2.1e-31  Score=192.80  Aligned_cols=160  Identities=34%  Similarity=0.581  Sum_probs=140.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+++|.+|+|||||++++..+.+.+.+.++.+ ......+.+++..+.+.|||+||++.+..++..+++.+|++|+||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~   80 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY   80 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence            6999999999999999999999998887777654 455566778888889999999999999999999999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHH
Q 028251           87 DITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA  165 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~  165 (211)
                      |++++.++.++..|+..+..... .+.|+++++||+|+........++...++...+.+++++||+++.|++++|.++.+
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd04176          81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVR  160 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHH
Confidence            99999999999999888876543 58999999999999765566666777887777889999999999999999999876


Q ss_pred             HH
Q 028251          166 KI  167 (211)
Q Consensus       166 ~~  167 (211)
                      .+
T Consensus       161 ~l  162 (163)
T cd04176         161 QM  162 (163)
T ss_pred             hc
Confidence            54

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd01860 Rab5_related Rab5-related subfamily

Probab=100.00  E-value=5e-31  Score=190.72  Aligned_cols=162  Identities=48%  Similarity=0.858  Sum_probs=147.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+++|++|+|||||+++|.+..+.....++.+.++....+.+++..+.+.+||+||++++...+..+++.+|++|+|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            37999999999999999999999998887788888888888888999999999999999999999999999999999999


Q ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHH
Q 028251           86 YDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA  165 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~  165 (211)
                      +|+++++++.....|+..+........|+++++||+|+........++...++...+++++++|+++|.|++++|++|.+
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd01860          81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK  160 (163)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999887776668999999999999766667778888888888899999999999999999999988


Q ss_pred             HH
Q 028251          166 KI  167 (211)
Q Consensus       166 ~~  167 (211)
                      .+
T Consensus       161 ~l  162 (163)
T cd01860         161 KL  162 (163)
T ss_pred             Hh
Confidence            75

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=100.00  E-value=4.8e-31  Score=192.34  Aligned_cols=162  Identities=43%  Similarity=0.808  Sum_probs=145.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchh-hchHHHhccccEEEE
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR-SITRSYYRGAAGALL   84 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~-~~~~~~~~~~d~~i~   84 (211)
                      .++|+++|++|+|||||+++|+...+...+.++.+.++....+.+++..+.+.+||++|++.+. .++..+++.+|++|+
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            4799999999999999999999998887788888888888888899999999999999999886 578888999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCC---CCCHHHHH
Q 028251           85 VYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASART---AQNVEEAF  160 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~~i~~~~  160 (211)
                      |||++++.++..+..|+..+.... ..+.|+++++||+|+.....+..++...++...+++++++||++   +.+++++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f  161 (170)
T cd04115          82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF  161 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence            999999999999999998887654 35799999999999987777788888889888889999999999   89999999


Q ss_pred             HHHHHHH
Q 028251          161 IKTAAKI  167 (211)
Q Consensus       161 ~~i~~~~  167 (211)
                      ..+.+.+
T Consensus       162 ~~l~~~~  168 (170)
T cd04115         162 MTLAHKL  168 (170)
T ss_pred             HHHHHHh
Confidence            9888765

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=100.00  E-value=4.6e-31  Score=190.43  Aligned_cols=159  Identities=38%  Similarity=0.668  Sum_probs=138.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+++|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++++||
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~   80 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF   80 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence            6899999999999999999999988877777766554 455678888888999999999999999999999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHH
Q 028251           87 DITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA  165 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~  165 (211)
                      |++++.++..+..|+..+.+... .+.|+++++||+|+.+ .....++...++...+.+++++||++|.|++++|+++.+
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  159 (162)
T cd04138          81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVR  159 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHH
Confidence            99999999999999888876643 5789999999999965 345567777888888899999999999999999999986


Q ss_pred             HH
Q 028251          166 KI  167 (211)
Q Consensus       166 ~~  167 (211)
                      .+
T Consensus       160 ~~  161 (162)
T cd04138         160 EI  161 (162)
T ss_pred             Hh
Confidence            54

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=100.00  E-value=5.9e-31  Score=190.47  Aligned_cols=161  Identities=36%  Similarity=0.603  Sum_probs=140.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+++|++|+|||||++++++..+...+.++.+..+ .....+++..+.+.+|||||++.+..++..+++.+|++++|
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   80 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV   80 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence            47999999999999999999999888777777655444 44466888889999999999999999999999999999999


Q ss_pred             EECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Q 028251           86 YDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA  164 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~  164 (211)
                      ||++++.++..+..|+..+.... ..+.|+++++||+|+........++...++...+++++++||++|.|++++|++|.
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  160 (164)
T cd04145          81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV  160 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999998887653 35789999999999977666677778888888889999999999999999999998


Q ss_pred             HHH
Q 028251          165 AKI  167 (211)
Q Consensus       165 ~~~  167 (211)
                      +.+
T Consensus       161 ~~~  163 (164)
T cd04145         161 RVI  163 (164)
T ss_pred             Hhh
Confidence            764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd01871 Rac1_like Rac1-like subfamily

Probab=100.00  E-value=3.7e-31  Score=193.56  Aligned_cols=158  Identities=32%  Similarity=0.602  Sum_probs=137.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+++|.+|||||||+.+++.+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..++..+|++|+||
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF   80 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence            6999999999999999999999999888888866444 345678888999999999999999999999999999999999


Q ss_pred             ECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-cEEEEeCCC
Q 028251           87 DITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENGL-LFLEASART  152 (211)
Q Consensus        87 d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~~  152 (211)
                      |++++++|..+. .|+..+.... .+.|+++|+||+|+.+.            ..+..+++..++.+.+. +++++||++
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  159 (174)
T cd01871          81 SLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT  159 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence            999999999996 5777776543 58999999999999542            24677888899998884 899999999


Q ss_pred             CCCHHHHHHHHHHH
Q 028251          153 AQNVEEAFIKTAAK  166 (211)
Q Consensus       153 ~~~i~~~~~~i~~~  166 (211)
                      |.|++++|+.+.+.
T Consensus       160 ~~~i~~~f~~l~~~  173 (174)
T cd01871         160 QKGLKTVFDEAIRA  173 (174)
T ss_pred             cCCHHHHHHHHHHh
Confidence            99999999988764

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04134 Rho3 Rho3 subfamily

Probab=100.00  E-value=4.7e-31  Score=195.54  Aligned_cols=160  Identities=34%  Similarity=0.589  Sum_probs=137.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      .||+++|++|||||||+++|..+.+...+.++.+..+. ..+.+++..+.+.|||++|++.+..++..++..+|++|+||
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~   79 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF   79 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence            38999999999999999999999998888788766654 44667888899999999999999999999999999999999


Q ss_pred             ECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEecCCCCCCC------------CCCHHHHHHHHHHcC-CcEEEEeCCC
Q 028251           87 DITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRR------------AVSKEEGEQFAKENG-LLFLEASART  152 (211)
Q Consensus        87 d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~-~~~~~~s~~~  152 (211)
                      |++++.+|+.+. .|+..+.... .+.|+++|+||+|+.+..            .+..+++..++...+ ++++++||++
T Consensus        80 dv~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~  158 (189)
T cd04134          80 SVDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL  158 (189)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence            999999999886 5888877654 489999999999996543            245566777777766 6899999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 028251          153 AQNVEEAFIKTAAKIL  168 (211)
Q Consensus       153 ~~~i~~~~~~i~~~~~  168 (211)
                      |.|++++|++|.+.++
T Consensus       159 ~~~v~e~f~~l~~~~~  174 (189)
T cd04134         159 NRGVNEAFTEAARVAL  174 (189)
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            9999999999998886

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04123 Rab21 Rab21 subfamily

Probab=100.00  E-value=1.4e-30  Score=187.94  Aligned_cols=161  Identities=40%  Similarity=0.762  Sum_probs=144.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+++|++|+|||||+++|++..+.+...++.+.......+.+.+..+.+.+||+||++.+..++..+++.+|++++||
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            58999999999999999999999887777777677777777777888889999999999999999999999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHH
Q 028251           87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK  166 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~  166 (211)
                      |+++++++..+..|+..+......+.|+++++||+|+.....+..++..+++...+.+++++|++++.|+++++++|.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~  160 (162)
T cd04123          81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR  160 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999887776689999999999998766777778888888889999999999999999999999876


Q ss_pred             H
Q 028251          167 I  167 (211)
Q Consensus       167 ~  167 (211)
                      +
T Consensus       161 ~  161 (162)
T cd04123         161 M  161 (162)
T ss_pred             h
Confidence            5

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04114 Rab30 Rab30 subfamily

Probab=100.00  E-value=2.1e-30  Score=188.57  Aligned_cols=167  Identities=50%  Similarity=0.873  Sum_probs=147.8

Q ss_pred             CC-CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccc
Q 028251            1 MS-YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGA   79 (211)
Q Consensus         1 m~-~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~   79 (211)
                      |+ +.+.++|+++|++|||||||++++..+.+.+.+.++.+.++....+.+++..+.+.+||+||++.+...+..++..+
T Consensus         1 ~~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~   80 (169)
T cd04114           1 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSA   80 (169)
T ss_pred             CCCCCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCC
Confidence            66 45679999999999999999999998888777777878888887888899889999999999999999889999999


Q ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Q 028251           80 AGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEA  159 (211)
Q Consensus        80 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~  159 (211)
                      |++++|||+.++.++..+..|+..+......+.|+++++||+|+.+.+++..+....+......+++++|+++|.|++++
T Consensus        81 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l  160 (169)
T cd04114          81 NALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKL  160 (169)
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHH
Confidence            99999999999999999999998887766667999999999999776666666677777777788999999999999999


Q ss_pred             HHHHHHHH
Q 028251          160 FIKTAAKI  167 (211)
Q Consensus       160 ~~~i~~~~  167 (211)
                      |+.|.+.+
T Consensus       161 ~~~i~~~~  168 (169)
T cd04114         161 FLDLACRL  168 (169)
T ss_pred             HHHHHHHh
Confidence            99998764

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04142 RRP22 RRP22 subfamily

Probab=100.00  E-value=7e-31  Score=195.65  Aligned_cols=167  Identities=21%  Similarity=0.261  Sum_probs=138.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh--------chHHHhcc
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS--------ITRSYYRG   78 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~--------~~~~~~~~   78 (211)
                      +||+|+|.+|||||||+++|..+.+...+.++.+.++....+.+++..+.+.+|||||...+..        .....++.
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            5899999999999999999999999888888877777666677889889999999999654321        13345789


Q ss_pred             ccEEEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-HcCCcEEEEeCCCCC
Q 028251           79 AAGALLVYDITRRETFNHLSSWLEDARQHA---NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-ENGLLFLEASARTAQ  154 (211)
Q Consensus        79 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~  154 (211)
                      +|++|+|||++++++++.+..|+..+....   ..+.|+++++||+|+...+....++...++. ..+++|+++||++|.
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~  160 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW  160 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence            999999999999999999999998887654   3679999999999997766666666666654 468899999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhh
Q 028251          155 NVEEAFIKTAAKILQNIQE  173 (211)
Q Consensus       155 ~i~~~~~~i~~~~~~~~~~  173 (211)
                      |++++|+.+.+.++.+-+.
T Consensus       161 ~v~~lf~~i~~~~~~~~~~  179 (198)
T cd04142         161 HILLLFKELLISATTRGRS  179 (198)
T ss_pred             CHHHHHHHHHHHhhccCCC
Confidence            9999999999888755443

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd01862 Rab7 Rab7 subfamily

Probab=100.00  E-value=2.4e-30  Score=188.70  Aligned_cols=165  Identities=42%  Similarity=0.740  Sum_probs=145.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|+||
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999988888888888888777888988899999999999999999999999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhcC----CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC-CcEEEEeCCCCCCHHHHHH
Q 028251           87 DITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFI  161 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~i~~~~~  161 (211)
                      |++++.++..+..|...+.....    .+.|+++++||+|+..+.....++...+++..+ .+++++|+++|.|++++|+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  160 (172)
T cd01862          81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE  160 (172)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence            99999999998888877655432    379999999999997656667778888888877 7899999999999999999


Q ss_pred             HHHHHHHHHH
Q 028251          162 KTAAKILQNI  171 (211)
Q Consensus       162 ~i~~~~~~~~  171 (211)
                      .|.+.+.+..
T Consensus       161 ~i~~~~~~~~  170 (172)
T cd01862         161 TIARKALEQE  170 (172)
T ss_pred             HHHHHHHhcc
Confidence            9999887763

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.98  E-value=1.4e-30  Score=193.87  Aligned_cols=156  Identities=30%  Similarity=0.587  Sum_probs=139.7

Q ss_pred             EcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCH
Q 028251           12 IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR   91 (211)
Q Consensus        12 vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~   91 (211)
                      +|..|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.||||+|++.+..++..+++.+|++|+|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999999999999888888888989999888888899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 028251           92 ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN  170 (211)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~  170 (211)
                      .++..+..|+..+.... .+.|+++|+||+|+... .+..+. ..++...++.|+++||++|.||+++|++|.+.+...
T Consensus        81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~~-~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~  156 (200)
T smart00176       81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKDR-KVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD  156 (200)
T ss_pred             HHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccc-cCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence            99999999999998765 48999999999998643 344333 467777889999999999999999999999988765

Ran is involved in the active transport of proteins through nuclear pores.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.98  E-value=2e-30  Score=187.87  Aligned_cols=160  Identities=31%  Similarity=0.565  Sum_probs=140.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhC--CCCCCCCCCeeeEEEEEEEEEC-CEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDK--RFQPVHDLTIGVEFGARMVTID-GRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      +||+++|++|||||||+++|...  .+...+.++.+.++....+.++ +..+.+.+||+||++.+..++..++..+|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999865  6777888888888877777665 56789999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Q 028251           84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT  163 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i  163 (211)
                      +|||+++++++..+..|+..+.... .+.|+++|+||+|+.+..+...++...+....+.+++++|++++.|++++|+.|
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  159 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL  159 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence            9999999999999999998887664 479999999999997766667666677777778899999999999999999999


Q ss_pred             HHHH
Q 028251          164 AAKI  167 (211)
Q Consensus       164 ~~~~  167 (211)
                      .+.+
T Consensus       160 ~~~~  163 (164)
T cd04101         160 ARAF  163 (164)
T ss_pred             HHHh
Confidence            8765

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd01892 Miro2 Miro2 subfamily

Probab=99.98  E-value=1.4e-30  Score=189.75  Aligned_cols=163  Identities=21%  Similarity=0.298  Sum_probs=140.5

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      ...+||+++|.+|||||||+++|+++.+. ..+.++.+..+....+.+++..+.+.+||++|++.+..++..++..+|++
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~   81 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA   81 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence            36799999999999999999999999998 78888888888877788888888999999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEeCCCCCCHHHHHH
Q 028251           83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFI  161 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~~  161 (211)
                      |+|||++++.++..+..|+..+...  .+.|+++|+||+|+.+......++...++...+. .++++||+++.|++++|+
T Consensus        82 llv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~  159 (169)
T cd01892          82 CLVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFT  159 (169)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHH
Confidence            9999999999999988888765332  3799999999999965444333455667777776 479999999999999999


Q ss_pred             HHHHHHH
Q 028251          162 KTAAKIL  168 (211)
Q Consensus       162 ~i~~~~~  168 (211)
                      .|.+.+.
T Consensus       160 ~l~~~~~  166 (169)
T cd01892         160 KLATAAQ  166 (169)
T ss_pred             HHHHHhh
Confidence            9998875

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd01863 Rab18 Rab18 subfamily

Probab=99.98  E-value=4.4e-30  Score=185.47  Aligned_cols=159  Identities=52%  Similarity=0.919  Sum_probs=142.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+++|++|+|||||+++|.+..+.....++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999887777888888888777788888899999999999999999999999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHH
Q 028251           87 DITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA  165 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~  165 (211)
                      |++++.++..+..|+..+.... ..+.|+++++||+|+.. .....++...++...+++++++|+++|.|++++++.+.+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~  159 (161)
T cd01863          81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE  159 (161)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence            9999999999999998887765 36899999999999973 345667888888889999999999999999999998876


Q ss_pred             H
Q 028251          166 K  166 (211)
Q Consensus       166 ~  166 (211)
                      .
T Consensus       160 ~  160 (161)
T cd01863         160 K  160 (161)
T ss_pred             h
Confidence            5

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.98  E-value=2.3e-30  Score=189.26  Aligned_cols=158  Identities=33%  Similarity=0.620  Sum_probs=137.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEEC
Q 028251            9 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDI   88 (211)
Q Consensus         9 i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~   88 (211)
                      |+|+|++|||||||+++|..+.+...+.++....+. ..+.+++..+.+.+|||||++.+..++..+++.+|++|+|||+
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   79 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYS-ADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV   79 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeee-EEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence            689999999999999999999998877777655544 4567888889999999999999999999999999999999999


Q ss_pred             CCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-cEEEEeCCCCC
Q 028251           89 TRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENGL-LFLEASARTAQ  154 (211)
Q Consensus        89 ~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~~~~  154 (211)
                      +++++++.+. .|+..+.... ++.|+++++||+|+...            ..+..+++..++...+. .++++||+++.
T Consensus        80 ~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  158 (174)
T smart00174       80 DSPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE  158 (174)
T ss_pred             CCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            9999999986 5888776654 48999999999999642            23667778889998886 89999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 028251          155 NVEEAFIKTAAKIL  168 (211)
Q Consensus       155 ~i~~~~~~i~~~~~  168 (211)
                      |++++|+.+.+.++
T Consensus       159 ~v~~lf~~l~~~~~  172 (174)
T smart00174      159 GVREVFEEAIRAAL  172 (174)
T ss_pred             CHHHHHHHHHHHhc
Confidence            99999999998774

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.97  E-value=2.4e-30  Score=192.14  Aligned_cols=158  Identities=27%  Similarity=0.452  Sum_probs=129.0

Q ss_pred             eeeEEEEcCCCCCHHHHHH-HHHhCC-----CCCCCCCCeee-EEEEEE--------EEECCEEEEEEEEeCCCccchhh
Q 028251            6 LFKYIIIGDTGVGKSCLLL-QFTDKR-----FQPVHDLTIGV-EFGARM--------VTIDGRPIKLQIWDTAGQESFRS   70 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~l~l~D~~G~~~~~~   70 (211)
                      .+||+++|+.|||||||+. ++.+..     +.+.+.|+.+. +.....        ..+++..+.+.||||+|++.  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            4799999999999999995 665443     34556677652 322221        25788899999999999875  3


Q ss_pred             chHHHhccccEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEecCCCCC-------------------CCCCC
Q 028251           71 ITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAH-------------------RRAVS  130 (211)
Q Consensus        71 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~-------------------~~~~~  130 (211)
                      ....+++.+|++|+|||++++.+|.++. .|+..+.... .+.|+++|+||+|+.+                   .+.++
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~  158 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP  158 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence            4556889999999999999999999997 5888886654 4789999999999864                   35678


Q ss_pred             HHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHH
Q 028251          131 KEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK  166 (211)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~  166 (211)
                      .++++.++++.+++|+++||++|.||+++|+.+++.
T Consensus       159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence            899999999999999999999999999999988763

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd00154 Rab Rab family

Probab=99.97  E-value=6.6e-30  Score=183.35  Aligned_cols=158  Identities=59%  Similarity=0.983  Sum_probs=145.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+++|++++|||||+++|.+..+...+.++.+.++....+..++....+.+||+||++.+...+..+++++|++|+|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999998888888899998888888888899999999999999999999999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Q 028251           87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA  164 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~  164 (211)
                      |+++++++..+..|+..+........|+++++||+|+........++...++...+.+++++|++++.|+++++++|.
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154          81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence            999999999999999988887656899999999999975566677888889888899999999999999999999875

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.97  E-value=1.2e-29  Score=194.71  Aligned_cols=160  Identities=26%  Similarity=0.464  Sum_probs=138.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+++|++|||||||+++|+.+.+...+.++.+ ++....+.+++..+.+.||||+|++.+..++..++..+|++|+||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf   79 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF   79 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence            4899999999999999999999998877777765 555566788898999999999999999888888899999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHh---------cCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-cCCcEEEEeCCCCCCH
Q 028251           87 DITRRETFNHLSSWLEDARQH---------ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNV  156 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~---------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~i  156 (211)
                      |++++++|+.+..|+..+...         ...+.|+++++||+|+.....+..+++.+++.. .++.++++||+++.|+
T Consensus        80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI  159 (247)
T cd04143          80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL  159 (247)
T ss_pred             eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence            999999999999998888654         224799999999999976566777777777654 4678999999999999


Q ss_pred             HHHHHHHHHHH
Q 028251          157 EEAFIKTAAKI  167 (211)
Q Consensus       157 ~~~~~~i~~~~  167 (211)
                      +++|++|.+..
T Consensus       160 ~elf~~L~~~~  170 (247)
T cd04143         160 DEMFRALFSLA  170 (247)
T ss_pred             HHHHHHHHHHh
Confidence            99999998765

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04177 RSR1 RSR1 subgroup

Probab=99.97  E-value=8.2e-30  Score=185.48  Aligned_cols=161  Identities=39%  Similarity=0.636  Sum_probs=141.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      ++|+++|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.++++++||
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~   80 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY   80 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence            6899999999999999999999998777777766444 456778888899999999999999999999999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC-CcEEEEeCCCCCCHHHHHHHHH
Q 028251           87 DITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTA  164 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~i~~~~~~i~  164 (211)
                      |++++++++.+..|...+.... ..+.|+++++||.|+.+.+....++...+++..+ ++++++||+++.|++++|+++.
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~  160 (168)
T cd04177          81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLV  160 (168)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHH
Confidence            9999999999999988887643 3579999999999997767777777778887777 7899999999999999999998


Q ss_pred             HHHH
Q 028251          165 AKIL  168 (211)
Q Consensus       165 ~~~~  168 (211)
                      ..++
T Consensus       161 ~~~~  164 (168)
T cd04177         161 RQII  164 (168)
T ss_pred             HHHh
Confidence            7654

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.97  E-value=5.7e-30  Score=184.39  Aligned_cols=153  Identities=21%  Similarity=0.381  Sum_probs=129.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+++|+.|||||||+++++.+.+.+.+.++ +..+ ...+.+++..+.+.+||++|++.     ..+++.+|++++||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~   73 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF   73 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence            48999999999999999999988887765444 4444 35678899889999999999974     34667899999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCC--CCCCCCHHHHHHHHHHc-CCcEEEEeCCCCCCHHHHHHH
Q 028251           87 DITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLA--HRRAVSKEEGEQFAKEN-GLLFLEASARTAQNVEEAFIK  162 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~i~~~~~~  162 (211)
                      |++++.+|+++..|+..+..... .+.|+++++||.|+.  ..+.+..++++++++.. ++.|+++||+++.||+++|..
T Consensus        74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~  153 (158)
T cd04103          74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE  153 (158)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence            99999999999999999877653 578999999999985  34667778888888776 589999999999999999999


Q ss_pred             HHHH
Q 028251          163 TAAK  166 (211)
Q Consensus       163 i~~~  166 (211)
                      +.+.
T Consensus       154 ~~~~  157 (158)
T cd04103         154 AAQK  157 (158)
T ss_pred             HHhh
Confidence            8754

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.97  E-value=3.9e-30  Score=186.62  Aligned_cols=160  Identities=39%  Similarity=0.586  Sum_probs=136.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc-hhhchHHHhccccEEEEEE
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES-FRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~-~~~~~~~~~~~~d~~i~v~   86 (211)
                      ||+++|++|+|||||+++++...+...+.++.+..+ ...+.+++..+.+.+||+||++. .......+++.+|++|+||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~   79 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY   79 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence            689999999999999999998888766666654343 45567888899999999999885 3445677889999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCC-CCHHHHHHHH
Q 028251           87 DITRRETFNHLSSWLEDARQHA--NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTA-QNVEEAFIKT  163 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~~i~~~~~~i  163 (211)
                      |++++.+++.+..|+..+....  ..+.|+++|+||+|+.+.+.+..+++..++...+.+++++|++++ .|++++|+.+
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l  159 (165)
T cd04146          80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL  159 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence            9999999999999988887754  357999999999999776677778888899888999999999999 5999999999


Q ss_pred             HHHHH
Q 028251          164 AAKIL  168 (211)
Q Consensus       164 ~~~~~  168 (211)
                      .+.+.
T Consensus       160 ~~~~~  164 (165)
T cd04146         160 CREVR  164 (165)
T ss_pred             HHHHh
Confidence            88664

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04148 RGK RGK subfamily

Probab=99.97  E-value=1.1e-29  Score=192.42  Aligned_cols=164  Identities=30%  Similarity=0.402  Sum_probs=139.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhc-cccEEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYR-GAAGALL   84 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~-~~d~~i~   84 (211)
                      +||+++|++|+|||||+++|..+.+. ..+.++.+.++....+.+++....+.+||+||++  ......++. .+|++|+
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence            58999999999999999999988876 5666665557777778888889999999999998  233445566 8999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Q 028251           85 VYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT  163 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i  163 (211)
                      |||++++.++..+..|+..+..... .+.|+++|+||+|+.....+..++..+++...+++++++||+++.|++++|++|
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l  158 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI  158 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            9999999999999999988876542 579999999999997777777777888888888999999999999999999999


Q ss_pred             HHHHHHHHh
Q 028251          164 AAKILQNIQ  172 (211)
Q Consensus       164 ~~~~~~~~~  172 (211)
                      .+.+.....
T Consensus       159 ~~~~~~~~~  167 (221)
T cd04148         159 VRQIRLRRD  167 (221)
T ss_pred             HHHHHhhhc
Confidence            988864443

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04135 Tc10 TC10 subfamily

Probab=99.97  E-value=1.8e-29  Score=184.56  Aligned_cols=159  Identities=29%  Similarity=0.552  Sum_probs=135.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+++|++|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..++..+|++|+||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   79 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF   79 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence            5899999999999999999999998777777755443 345678888889999999999999999999999999999999


Q ss_pred             ECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-cEEEEeCCC
Q 028251           87 DITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENGL-LFLEASART  152 (211)
Q Consensus        87 d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~~  152 (211)
                      |+.++.+++.+. .|+..+... ..+.|+++++||+|+.+.            ..+..+++..+++..+. +++++||++
T Consensus        80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  158 (174)
T cd04135          80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT  158 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence            999999999886 577777655 568999999999998543            24666778888888886 699999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 028251          153 AQNVEEAFIKTAAKI  167 (211)
Q Consensus       153 ~~~i~~~~~~i~~~~  167 (211)
                      |.|++++|+.+++.+
T Consensus       159 ~~gi~~~f~~~~~~~  173 (174)
T cd04135         159 QKGLKTVFDEAILAI  173 (174)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998765

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.97  E-value=3.1e-29  Score=183.26  Aligned_cols=157  Identities=30%  Similarity=0.572  Sum_probs=134.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +|++++|++|+|||||++++..+.+...+.++. .+.....+.+++..+.+.+||+||++.+..++..+++.+|++|+||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~   79 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF   79 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence            589999999999999999999998888777774 4444556778888899999999999999999999999999999999


Q ss_pred             ECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEecCCCCC------------CCCCCHHHHHHHHHHcCC-cEEEEeCCC
Q 028251           87 DITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAH------------RRAVSKEEGEQFAKENGL-LFLEASART  152 (211)
Q Consensus        87 d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~s~~~  152 (211)
                      |++++.+++.+. .|+..+.... .+.|+++++||.|+..            .+.+..+++..++...+. .++++||++
T Consensus        80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~  158 (173)
T cd04130          80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT  158 (173)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence            999999999885 6877776533 4799999999999853            345667788889988887 899999999


Q ss_pred             CCCHHHHHHHHHH
Q 028251          153 AQNVEEAFIKTAA  165 (211)
Q Consensus       153 ~~~i~~~~~~i~~  165 (211)
                      |.|++++|+.++-
T Consensus       159 ~~~v~~lf~~~~~  171 (173)
T cd04130         159 QKNLKEVFDTAIL  171 (173)
T ss_pred             CCCHHHHHHHHHh
Confidence            9999999988753

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.97  E-value=9.2e-32  Score=179.88  Aligned_cols=161  Identities=43%  Similarity=0.838  Sum_probs=150.3

Q ss_pred             EEEcCCCCCHHHHHHHHHhCCCC-CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEEC
Q 028251           10 IIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDI   88 (211)
Q Consensus        10 ~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~   88 (211)
                      +++|++++|||.|+-++.++.|. .+..+++|+++.-+.+.+++..+++++|||+|++++++....|++.+|+++++||+
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi   80 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI   80 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence            37899999999999999888775 45678899999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHH
Q 028251           89 TRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL  168 (211)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~~  168 (211)
                      .+..+|++.+.|+.++.++....+.+.+++||+|+..++.+..++++++++..++||+++|+++|.+++-.|-.|.+.+.
T Consensus        81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~  160 (192)
T KOG0083|consen   81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELK  160 (192)
T ss_pred             ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHH
Confidence            99999999999999999998888889999999999888888889999999999999999999999999999999988876


Q ss_pred             HH
Q 028251          169 QN  170 (211)
Q Consensus       169 ~~  170 (211)
                      +.
T Consensus       161 k~  162 (192)
T KOG0083|consen  161 KL  162 (192)
T ss_pred             Hh
Confidence            54

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.97  E-value=6.5e-29  Score=179.62  Aligned_cols=161  Identities=40%  Similarity=0.641  Sum_probs=140.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+++|++|+|||||+++|+...+...+.++.+..+ .....+++..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence            5899999999999999999999888777776655444 345678888899999999999999999999999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHH
Q 028251           87 DITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA  165 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~  165 (211)
                      |++++.++..+..|+..+..... .+.|+++++||+|+.+......++...++...+++++++|++++.|++++|+.+.+
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  159 (164)
T cd04139          80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence            99999999999999888877643 58999999999999764555667777888888899999999999999999999987


Q ss_pred             HHH
Q 028251          166 KIL  168 (211)
Q Consensus       166 ~~~  168 (211)
                      .+.
T Consensus       160 ~~~  162 (164)
T cd04139         160 EIR  162 (164)
T ss_pred             HHH
Confidence            764

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd00876 Ras Ras family

Probab=99.97  E-value=7.9e-29  Score=178.37  Aligned_cols=158  Identities=40%  Similarity=0.647  Sum_probs=139.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEE
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD   87 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   87 (211)
                      ||+++|++|||||||+++|++..+...+.++.. +.....+..++..+.+.+||+||++.+...+..+++.+|++++|||
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   79 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS   79 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence            689999999999999999998887777777655 5556667778778899999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHH
Q 028251           88 ITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK  166 (211)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~  166 (211)
                      +++++++..+..|+..+..... ...|+++++||+|+........+++..++...+.+++++|++++.|++++|++|.+.
T Consensus        80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~  159 (160)
T cd00876          80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE  159 (160)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence            9999999999999988877654 689999999999998766677788888888888999999999999999999998865

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04129 Rho2 Rho2 subfamily

Probab=99.97  E-value=1.5e-28  Score=181.93  Aligned_cols=161  Identities=32%  Similarity=0.566  Sum_probs=134.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      .||+|+|++|+|||||+++|..+.+.+.+.++....+ ...+.+++..+.+.+||++|++.+......++..+|++++||
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~   80 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF   80 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence            5899999999999999999998887766666654444 345677888889999999999988877777889999999999


Q ss_pred             ECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEecCCCCC----------CCCCCHHHHHHHHHHcCC-cEEEEeCCCCC
Q 028251           87 DITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAH----------RRAVSKEEGEQFAKENGL-LFLEASARTAQ  154 (211)
Q Consensus        87 d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~----------~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~  154 (211)
                      |+++++++..+. .|+..+.... ++.|+++|+||+|+.+          .+.+..++...+++..+. +++++||++|.
T Consensus        81 ~i~~~~s~~~~~~~~~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~  159 (187)
T cd04129          81 AVDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE  159 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence            999999999986 5888876654 4799999999999854          234455677888888885 79999999999


Q ss_pred             CHHHHHHHHHHHHHH
Q 028251          155 NVEEAFIKTAAKILQ  169 (211)
Q Consensus       155 ~i~~~~~~i~~~~~~  169 (211)
                      |++++|+.+.+.++.
T Consensus       160 ~v~~~f~~l~~~~~~  174 (187)
T cd04129         160 GVDDVFEAATRAALL  174 (187)
T ss_pred             CHHHHHHHHHHHHhc
Confidence            999999999987743

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.97  E-value=1.2e-28  Score=181.68  Aligned_cols=169  Identities=22%  Similarity=0.324  Sum_probs=133.6

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEE-CCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTI-DGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ..+||+++|++|||||||++++....+... .++.+.+.....+.. ++..+.+.+|||||++.+..++..+++.+|++|
T Consensus         2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii   80 (183)
T cd04152           2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV   80 (183)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence            358999999999999999999998887654 455565555544444 446688999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH------cCCcEEEEeCCCCCCH
Q 028251           84 LVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE------NGLLFLEASARTAQNV  156 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~s~~~~~~i  156 (211)
                      +|||++++.++.....|+..+.... ..+.|+++++||+|+.+  ....++...+...      .+++++++||+++.|+
T Consensus        81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi  158 (183)
T cd04152          81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN--ALSVSEVEKLLALHELSASTPWHVQPACAIIGEGL  158 (183)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc--cCCHHHHHHHhCccccCCCCceEEEEeecccCCCH
Confidence            9999999998888888887776543 25799999999999864  2334444444321      1246889999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccc
Q 028251          157 EEAFIKTAAKILQNIQEGAL  176 (211)
Q Consensus       157 ~~~~~~i~~~~~~~~~~~~~  176 (211)
                      ++++++|.+.+.+..+...+
T Consensus       159 ~~l~~~l~~~l~~~~~~~~~  178 (183)
T cd04152         159 QEGLEKLYEMILKRRKMLRQ  178 (183)
T ss_pred             HHHHHHHHHHHHHHHhhhhh
Confidence            99999999999877665443

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.97  E-value=3.9e-28  Score=177.65  Aligned_cols=159  Identities=31%  Similarity=0.602  Sum_probs=133.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      .||+++|++|||||||+++|....+...+.++.+..+. ..+.+++..+.+.+|||+|++.+...+..++..+|++++||
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   80 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence            68999999999999999999999988777777665553 35678888899999999999999988888899999999999


Q ss_pred             ECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-cEEEEeCCC
Q 028251           87 DITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENGL-LFLEASART  152 (211)
Q Consensus        87 d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~~  152 (211)
                      |+++++++.++. .|...+.... .+.|+++++||+|+...            ..+...+.+.++...+. .++++||++
T Consensus        81 ~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  159 (175)
T cd01870          81 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT  159 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence            999999998885 5777766543 47999999999998542            22345667777777664 799999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 028251          153 AQNVEEAFIKTAAKI  167 (211)
Q Consensus       153 ~~~i~~~~~~i~~~~  167 (211)
                      |.|++++|++|.+.+
T Consensus       160 ~~~v~~lf~~l~~~~  174 (175)
T cd01870         160 KEGVREVFEMATRAA  174 (175)
T ss_pred             CcCHHHHHHHHHHHh
Confidence            999999999998764

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.97  E-value=5.8e-28  Score=177.58  Aligned_cols=163  Identities=36%  Similarity=0.550  Sum_probs=139.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      .||+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++++...+..++..+|++++||
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY   80 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence            6899999999999999999999888766666654444 344667878888999999999999999999999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHH
Q 028251           87 DITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA  165 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~  165 (211)
                      |+++..+++.+..|+..+.... ..+.|+++++||+|+........++...++...+.+++++|++++.|+.++|+++.+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  160 (180)
T cd04137          81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE  160 (180)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            9999999999999888876654 357899999999999766666666777788878889999999999999999999998


Q ss_pred             HHHHH
Q 028251          166 KILQN  170 (211)
Q Consensus       166 ~~~~~  170 (211)
                      .+...
T Consensus       161 ~~~~~  165 (180)
T cd04137         161 EIEKV  165 (180)
T ss_pred             HHHHh
Confidence            87544

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.97  E-value=6.8e-31  Score=184.11  Aligned_cols=172  Identities=31%  Similarity=0.529  Sum_probs=164.0

Q ss_pred             CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028251            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      ++|..+|++|+|..++||||++++++.+-|...+..++++++....+.+++..+++.+||++|++++..+..+|++.+.+
T Consensus        16 d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa   95 (246)
T KOG4252|consen   16 DYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQA   95 (246)
T ss_pred             hhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccc
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028251           82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  161 (211)
                      .++||+.+|..+|+.+..|++.+....+ .+|.++|-||+|+.++..+...+.+.+++..+..++.+|++...|+..+|.
T Consensus        96 ~vLVFSTTDr~SFea~~~w~~kv~~e~~-~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~  174 (246)
T KOG4252|consen   96 SVLVFSTTDRYSFEATLEWYNKVQKETE-RIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFA  174 (246)
T ss_pred             eEEEEecccHHHHHHHHHHHHHHHHHhc-cCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHH
Confidence            9999999999999999999999987775 899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhc
Q 028251          162 KTAAKILQNIQEG  174 (211)
Q Consensus       162 ~i~~~~~~~~~~~  174 (211)
                      .|.+++.++..+.
T Consensus       175 YLaeK~~q~~kq~  187 (246)
T KOG4252|consen  175 YLAEKLTQQKKQS  187 (246)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988873

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.96  E-value=7.2e-28  Score=179.74  Aligned_cols=160  Identities=26%  Similarity=0.412  Sum_probs=133.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEE
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD   87 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   87 (211)
                      ||+++|++|+|||||+++|+...+...+.++.. ......+.+.+..+.+.+||+||+..+..++..++..+|++|+|||
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d   79 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA   79 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence            689999999999999999999988776666643 4445567788888899999999999998888899999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCC-CCCCCHHHHHHHHH-HcCCcEEEEeCCCCCCHHHHHHHHH
Q 028251           88 ITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAH-RRAVSKEEGEQFAK-ENGLLFLEASARTAQNVEEAFIKTA  164 (211)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~i~~~~~~i~  164 (211)
                      ++++.+++.+..|+..+..... .+.|+++++||+|+.. ...+..++..+... ..+.+++++||++|.|++++|++|.
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  159 (198)
T cd04147          80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL  159 (198)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999888877654 5799999999999965 34444444444443 3467899999999999999999999


Q ss_pred             HHHH
Q 028251          165 AKIL  168 (211)
Q Consensus       165 ~~~~  168 (211)
                      +.+.
T Consensus       160 ~~~~  163 (198)
T cd04147         160 RQAN  163 (198)
T ss_pred             HHhh
Confidence            8775

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.96  E-value=4.1e-29  Score=181.11  Aligned_cols=153  Identities=22%  Similarity=0.359  Sum_probs=125.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEE
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD   87 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   87 (211)
                      .|+++|++|||||||+++|.+..+...+.++.+...    ..++...+.+.+||+||++.+...+..+++.+|++|+|||
T Consensus         1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   76 (164)
T cd04162           1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD   76 (164)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence            489999999999999999998888777777766543    3345567889999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCH----HHHHHHHHHcCCcEEEEeCCC------CCCHH
Q 028251           88 ITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK----EEGEQFAKENGLLFLEASART------AQNVE  157 (211)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~s~~~------~~~i~  157 (211)
                      ++++.++.....|+..+.... .+.|+++|+||.|+........    .++..++.+.++.++++||++      ++|++
T Consensus        77 ~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~  155 (164)
T cd04162          77 SADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVK  155 (164)
T ss_pred             CCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHH
Confidence            999999998888888775443 5899999999999966443221    123445556678899999998      99999


Q ss_pred             HHHHHHHH
Q 028251          158 EAFIKTAA  165 (211)
Q Consensus       158 ~~~~~i~~  165 (211)
                      ++|+.++.
T Consensus       156 ~~~~~~~~  163 (164)
T cd04162         156 DLLSQLIN  163 (164)
T ss_pred             HHHHHHhc
Confidence            99988763

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.96  E-value=2.2e-27  Score=179.31  Aligned_cols=167  Identities=31%  Similarity=0.547  Sum_probs=145.6

Q ss_pred             CCCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhcccc
Q 028251            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA   80 (211)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d   80 (211)
                      |.....+||+++|++|||||||+++++.+.+...+.++.+.++....+..++..+.+.+||++|++.+..++..++..++
T Consensus         4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~   83 (215)
T PTZ00132          4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ   83 (215)
T ss_pred             ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence            45668899999999999999999999988888888899999888888888889999999999999999999999999999


Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHH
Q 028251           81 GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF  160 (211)
Q Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~  160 (211)
                      ++|+|||+++..++..+..|+..+.... .+.|+++++||+|+.+. ....+ ...++...++.++++|++++.|+++.|
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~~-~~~~~-~~~~~~~~~~~~~e~Sa~~~~~v~~~f  160 (215)
T PTZ00132         84 CAIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKDR-QVKAR-QITFHRKKNLQYYDISAKSNYNFEKPF  160 (215)
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCccc-cCCHH-HHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            9999999999999999999998887654 47999999999998643 23333 345666778899999999999999999


Q ss_pred             HHHHHHHHHH
Q 028251          161 IKTAAKILQN  170 (211)
Q Consensus       161 ~~i~~~~~~~  170 (211)
                      .+|.+.+...
T Consensus       161 ~~ia~~l~~~  170 (215)
T PTZ00132        161 LWLARRLTND  170 (215)
T ss_pred             HHHHHHHhhc
Confidence            9999888654

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.96  E-value=3.1e-28  Score=179.18  Aligned_cols=159  Identities=18%  Similarity=0.302  Sum_probs=123.2

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      +..+||+++|..+||||||+++|..+.+. .+.++.+.+..  .+..  ..+.+.+||+||++.+..++..+++.+|++|
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI   89 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            35689999999999999999999877665 35566665543  2333  4577999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC-----CcEEEEeCCCCCCHH
Q 028251           84 LVYDITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG-----LLFLEASARTAQNVE  157 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~~s~~~~~~i~  157 (211)
                      +|||+++++++.....++..+... ...+.|++|++||.|++..  ...++.........     ..++++||++|.|++
T Consensus        90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~  167 (181)
T PLN00223         90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence            999999999988887776665432 2247999999999999653  33444444332222     235689999999999


Q ss_pred             HHHHHHHHHHHH
Q 028251          158 EAFIKTAAKILQ  169 (211)
Q Consensus       158 ~~~~~i~~~~~~  169 (211)
                      ++|++|.+.+.+
T Consensus       168 e~~~~l~~~~~~  179 (181)
T PLN00223        168 EGLDWLSNNIAN  179 (181)
T ss_pred             HHHHHHHHHHhh
Confidence            999999887754

>cd00157 Rho Rho (Ras homology) family

Probab=99.96  E-value=1.4e-27  Score=173.91  Aligned_cols=157  Identities=34%  Similarity=0.626  Sum_probs=130.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+++|++|+|||||+++|+++.+...+.++.... .......++..+.+.+||+||++.+......+++.+|++++||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDN-YSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF   79 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee-eEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence            589999999999999999999999876666664433 3445677888899999999999988888888889999999999


Q ss_pred             ECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEecCCCCCCC-----------CCCHHHHHHHHHHcCC-cEEEEeCCCC
Q 028251           87 DITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRR-----------AVSKEEGEQFAKENGL-LFLEASARTA  153 (211)
Q Consensus        87 d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~-~~~~~s~~~~  153 (211)
                      |++++.++.... .|+..+.... .+.|+++++||+|+....           .+..++...++...+. +++++|++++
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~  158 (171)
T cd00157          80 SVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ  158 (171)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence            999999987765 4666665544 489999999999986543           2346677778777777 8999999999


Q ss_pred             CCHHHHHHHHHH
Q 028251          154 QNVEEAFIKTAA  165 (211)
Q Consensus       154 ~~i~~~~~~i~~  165 (211)
                      .|++++|+.|.+
T Consensus       159 ~gi~~l~~~i~~  170 (171)
T cd00157         159 EGVKEVFEEAIR  170 (171)
T ss_pred             CCHHHHHHHHhh
Confidence            999999998875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04149 Arf6 Arf6 subfamily

Probab=99.96  E-value=3.1e-28  Score=177.14  Aligned_cols=155  Identities=20%  Similarity=0.346  Sum_probs=122.9

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ...++|+++|++|||||||+++|....+.. +.++.+.++.  .+..  ..+.+.+||+||++.+..++..+++.+|++|
T Consensus         7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii   81 (168)
T cd04149           7 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI   81 (168)
T ss_pred             CCccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            346899999999999999999998777643 4566666553  2333  4578999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-----cCCcEEEEeCCCCCCHH
Q 028251           84 LVYDITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-----NGLLFLEASARTAQNVE  157 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~i~  157 (211)
                      +|||++++.++.....|+..+... ...+.|+++++||+|+.+  ....+++......     ....++++||++|.|++
T Consensus        82 ~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~  159 (168)
T cd04149          82 FVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY  159 (168)
T ss_pred             EEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc--CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChH
Confidence            999999999998888877666443 225789999999999864  2455666665432     23468999999999999


Q ss_pred             HHHHHHHH
Q 028251          158 EAFIKTAA  165 (211)
Q Consensus       158 ~~~~~i~~  165 (211)
                      ++|++|.+
T Consensus       160 ~~~~~l~~  167 (168)
T cd04149         160 EGLTWLSS  167 (168)
T ss_pred             HHHHHHhc
Confidence            99998864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04158 ARD1 ARD1 subfamily

Probab=99.96  E-value=4.1e-28  Score=176.75  Aligned_cols=156  Identities=22%  Similarity=0.371  Sum_probs=124.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEE
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD   87 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   87 (211)
                      ||+++|+++||||||+++|.+..+.. +.++.+..+.  .+..  ..+.+.+||+||++.+...+..++..+|++|+|||
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   75 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD   75 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence            68999999999999999999886643 5556555553  2333  45778999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC------CcEEEEeCCCCCCHHHHH
Q 028251           88 ITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG------LLFLEASARTAQNVEEAF  160 (211)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~------~~~~~~s~~~~~~i~~~~  160 (211)
                      ++++.++..+..|+..+.... ..+.|++|++||+|+.+  ....+++..++...+      +.++++||++|.|++++|
T Consensus        76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f  153 (169)
T cd04158          76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL  153 (169)
T ss_pred             CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence            999999999988888876543 24689999999999964  355566666554222      358899999999999999


Q ss_pred             HHHHHHHHHH
Q 028251          161 IKTAAKILQN  170 (211)
Q Consensus       161 ~~i~~~~~~~  170 (211)
                      ++|.+.+...
T Consensus       154 ~~l~~~~~~~  163 (169)
T cd04158         154 DWLSRQLVAA  163 (169)
T ss_pred             HHHHHHHhhc
Confidence            9998776543

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.96  E-value=2e-28  Score=179.30  Aligned_cols=157  Identities=20%  Similarity=0.315  Sum_probs=122.0

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      +..+||+++|++|||||||+++|..+.+. .+.++.+..+..  +..  ..+.+.+||+||++.+...+..+++.+|++|
T Consensus        11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~--~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii   85 (175)
T smart00177       11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVET--VTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLI   85 (175)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence            34689999999999999999999877664 355666655532  333  3577999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-----cCCcEEEEeCCCCCCHH
Q 028251           84 LVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-----NGLLFLEASARTAQNVE  157 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~i~  157 (211)
                      +|||++++.++.....|+..+.... ..+.|++|++||.|+.+..  ..++.......     ..+.++++||++|.|++
T Consensus        86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  163 (175)
T smart00177       86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLY  163 (175)
T ss_pred             EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHH
Confidence            9999999999998888887765432 2478999999999996432  33333332211     23347789999999999


Q ss_pred             HHHHHHHHHH
Q 028251          158 EAFIKTAAKI  167 (211)
Q Consensus       158 ~~~~~i~~~~  167 (211)
                      ++|++|.+.+
T Consensus       164 e~~~~l~~~~  173 (175)
T smart00177      164 EGLTWLSNNL  173 (175)
T ss_pred             HHHHHHHHHh
Confidence            9999987764

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.96  E-value=1.7e-28  Score=177.08  Aligned_cols=152  Identities=20%  Similarity=0.337  Sum_probs=117.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+++|.++||||||++++..+.+. .+.++.+....  .+..  ..+.+.+||+||++++...+..+++.+|++|+||
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~   75 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999877775 35666665543  2333  3577899999999999999999999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEeCCCCCCHHHHH
Q 028251           87 DITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQNVEEAF  160 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~~~~  160 (211)
                      |++++.++.....|+..+... ...+.|+++++||.|+.+.  ...++......     ..++.++++||++|.|++++|
T Consensus        76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~  153 (159)
T cd04150          76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA--MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL  153 (159)
T ss_pred             eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence            999999999888877766432 2246899999999999643  22333222221     123357899999999999999


Q ss_pred             HHHHH
Q 028251          161 IKTAA  165 (211)
Q Consensus       161 ~~i~~  165 (211)
                      ++|.+
T Consensus       154 ~~l~~  158 (159)
T cd04150         154 DWLSN  158 (159)
T ss_pred             HHHhc
Confidence            98864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.96  E-value=1.4e-27  Score=176.58  Aligned_cols=167  Identities=39%  Similarity=0.585  Sum_probs=152.5

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ...+|+++|.+|+|||+|+.+|....|...+.++.+ +.+.+.+.+++..+.+.|+||+|++.+......++...|++++
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l   80 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL   80 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence            357999999999999999999999999999999977 5566678899999999999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Q 028251           85 VYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT  163 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i  163 (211)
                      ||+++++.+|+.+..+++.+.+... ...|+++|+||+|+...+.+..+++..++...+++|+++||+.+.+++++|..|
T Consensus        81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L  160 (196)
T KOG0395|consen   81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL  160 (196)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence            9999999999999999999955443 568999999999999889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q 028251          164 AAKILQNIQ  172 (211)
Q Consensus       164 ~~~~~~~~~  172 (211)
                      ++.+.....
T Consensus       161 ~r~~~~~~~  169 (196)
T KOG0395|consen  161 VREIRLPRE  169 (196)
T ss_pred             HHHHHhhhc
Confidence            998866333

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.96  E-value=1.6e-27  Score=177.41  Aligned_cols=148  Identities=22%  Similarity=0.417  Sum_probs=126.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEEC-----CEEEEEEEEeCCCccchhhchHHHhccccE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID-----GRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      +||+++|+.|+|||||+++|..+.+...+.++++.++..+.+.++     +..+.+.|||++|++.+..++..+++.+|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            589999999999999999999999988888898888877777664     567899999999999999999999999999


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhc-------------------CCCCeEEEEEecCCCCCCCCCCHHH----HHHHH
Q 028251           82 ALLVYDITRRETFNHLSSWLEDARQHA-------------------NPNMSIMLVGNKCDLAHRRAVSKEE----GEQFA  138 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~-------------------~~~~p~ivv~nK~Dl~~~~~~~~~~----~~~~~  138 (211)
                      +|+|||++++.+++++..|+..+....                   ..+.|++||+||.|+.+++....+.    ...++
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia  160 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA  160 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence            999999999999999999999986632                   2468999999999997655444432    34567


Q ss_pred             HHcCCcEEEEeCCCCC
Q 028251          139 KENGLLFLEASARTAQ  154 (211)
Q Consensus       139 ~~~~~~~~~~s~~~~~  154 (211)
                      .+.+++.++.++++..
T Consensus       161 ~~~~~~~i~~~c~~~~  176 (202)
T cd04102         161 EQGNAEEINLNCTNGR  176 (202)
T ss_pred             HhcCCceEEEecCCcc
Confidence            7789999888888643

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.96  E-value=2.5e-27  Score=174.51  Aligned_cols=160  Identities=23%  Similarity=0.338  Sum_probs=122.9

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ...+||+++|++|||||||++++..+.+.. +.++.+.++.  .+..  ..+.+.+||+||++.+..++..+++.+|++|
T Consensus        15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI   89 (182)
T PTZ00133         15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLI   89 (182)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            346899999999999999999998777654 4566665543  2333  4577999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-----cCCcEEEEeCCCCCCHH
Q 028251           84 LVYDITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-----NGLLFLEASARTAQNVE  157 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~i~  157 (211)
                      +|||+++++++.....++..+... ...+.|++|++||.|+.+.  ...++.......     ..+.++++||++|.|++
T Consensus        90 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~  167 (182)
T PTZ00133         90 FVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA--MSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLY  167 (182)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC--CCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHH
Confidence            999999999998888777666432 2246899999999998542  233333222211     22346789999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028251          158 EAFIKTAAKILQN  170 (211)
Q Consensus       158 ~~~~~i~~~~~~~  170 (211)
                      ++|++|.+.+.+.
T Consensus       168 e~~~~l~~~i~~~  180 (182)
T PTZ00133        168 EGLDWLSANIKKS  180 (182)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999877654

>cd01893 Miro1 Miro1 subfamily

Probab=99.96  E-value=4.3e-27  Score=170.85  Aligned_cols=160  Identities=28%  Similarity=0.376  Sum_probs=123.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+++|++|||||||+++|.++.+...+..+ .... .....+++..+.+.+|||||.+.+...+..++..+|++++||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~   78 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRV-LPEI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY   78 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCc-ccce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence            48999999999999999999999886553332 2222 233456677889999999999888777778889999999999


Q ss_pred             ECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEecCCCCCCCCCC--HHHHHHHHHHc-C-CcEEEEeCCCCCCHHHHHH
Q 028251           87 DITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRRAVS--KEEGEQFAKEN-G-LLFLEASARTAQNVEEAFI  161 (211)
Q Consensus        87 d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~-~-~~~~~~s~~~~~~i~~~~~  161 (211)
                      |++++.++..+. .|+..+.... .+.|+++++||+|+.+.....  .++...+.... + .+++++||+++.|++++|+
T Consensus        79 d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~  157 (166)
T cd01893          79 SVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY  157 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence            999999999975 5767666554 489999999999996644321  22233333332 2 3799999999999999999


Q ss_pred             HHHHHHHH
Q 028251          162 KTAAKILQ  169 (211)
Q Consensus       162 ~i~~~~~~  169 (211)
                      .+.+.++.
T Consensus       158 ~~~~~~~~  165 (166)
T cd01893         158 YAQKAVLH  165 (166)
T ss_pred             HHHHHhcC
Confidence            99887753

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04154 Arl2 Arl2 subfamily

Probab=99.96  E-value=2.7e-27  Score=173.00  Aligned_cols=155  Identities=21%  Similarity=0.319  Sum_probs=122.1

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      +..++|+++|++|+|||||+++|.+..+. .+.++.+.  ....+.++  .+.+.+||+||++.+...+..++..+|+++
T Consensus        12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g~--~~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   86 (173)
T cd04154          12 EREMRILILGLDNAGKTTILKKLLGEDID-TISPTLGF--QIKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALI   86 (173)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCcccc--ceEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            45689999999999999999999987543 34455453  33344455  467899999999999888999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEeCCCCCCHH
Q 028251           84 LVYDITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQNVE  157 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~  157 (211)
                      +|||++++.++.....|+..+... ...+.|+++++||+|+.+..  ..+++.....     ..+++++++||++|.|++
T Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  164 (173)
T cd04154          87 WVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGEGLL  164 (173)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCcCHH
Confidence            999999999998888887776442 23589999999999996532  4455555443     235679999999999999


Q ss_pred             HHHHHHHH
Q 028251          158 EAFIKTAA  165 (211)
Q Consensus       158 ~~~~~i~~  165 (211)
                      ++|+++.+
T Consensus       165 ~l~~~l~~  172 (173)
T cd04154         165 QGIDWLVD  172 (173)
T ss_pred             HHHHHHhc
Confidence            99998864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.95  E-value=6.9e-28  Score=174.81  Aligned_cols=167  Identities=35%  Similarity=0.610  Sum_probs=147.7

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEEC-CEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID-GRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      ...+|++|||+.++|||+|+-.+..+.|+..+.|++. +.+...+.++ +..+.+.+|||+|++.|..+++..++++|++
T Consensus         2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf   80 (198)
T KOG0393|consen    2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF   80 (198)
T ss_pred             ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence            4579999999999999999999999999999999987 4455557884 9999999999999999999998999999999


Q ss_pred             EEEEECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-cEEEE
Q 028251           83 LLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENGL-LFLEA  148 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~  148 (211)
                      ++||++.++.++.++. .|+.++..+. ++.|+++|++|.||.++            ..+..+++...+++.|+ .|+++
T Consensus        81 l~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec  159 (198)
T KOG0393|consen   81 LLCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC  159 (198)
T ss_pred             EEEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence            9999999999999975 7989888877 69999999999999742            35777889999999994 69999


Q ss_pred             eCCCCCCHHHHHHHHHHHHHHHHh
Q 028251          149 SARTAQNVEEAFIKTAAKILQNIQ  172 (211)
Q Consensus       149 s~~~~~~i~~~~~~i~~~~~~~~~  172 (211)
                      ||+++.|++++|+......+....
T Consensus       160 Sa~tq~~v~~vF~~a~~~~l~~~~  183 (198)
T KOG0393|consen  160 SALTQKGVKEVFDEAIRAALRPPQ  183 (198)
T ss_pred             hhhhhCCcHHHHHHHHHHHhcccc
Confidence            999999999999998888765443

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.95  E-value=2e-26  Score=168.60  Aligned_cols=155  Identities=26%  Similarity=0.341  Sum_probs=120.2

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ...++|+++|++|+|||||+++|..+.+.. ..++.+.++.  .+.++  .+.+.+||+||++.+...+..+++.+|++|
T Consensus        13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi   87 (174)
T cd04153          13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVI   87 (174)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEE
Confidence            346899999999999999999999877764 4556565543  23333  577899999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHH-----HHcCCcEEEEeCCCCCCHH
Q 028251           84 LVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFA-----KENGLLFLEASARTAQNVE  157 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i~  157 (211)
                      +|+|+++++++.....++..+.... ..+.|+++++||+|+.+.  ...++..+..     ...+++++++||++|.|++
T Consensus        88 ~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~  165 (174)
T cd04153          88 LVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLP  165 (174)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCCCCHH
Confidence            9999999988888777766664432 247999999999998652  2334332222     2234579999999999999


Q ss_pred             HHHHHHHH
Q 028251          158 EAFIKTAA  165 (211)
Q Consensus       158 ~~~~~i~~  165 (211)
                      ++|++|.+
T Consensus       166 e~~~~l~~  173 (174)
T cd04153         166 EGLDWIAS  173 (174)
T ss_pred             HHHHHHhc
Confidence            99999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04157 Arl6 Arl6 subfamily

Probab=99.95  E-value=1.2e-26  Score=167.59  Aligned_cols=152  Identities=19%  Similarity=0.319  Sum_probs=116.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCC-CCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +|+++|++|||||||+++|.+... ...+.++.+.+...  +  ....+.+.+||+||++.+..++..+++.+|++|+|+
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~--~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   76 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES--F--EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI   76 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE--E--EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence            589999999999999999998753 44555666644322  2  234577899999999999999999999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhc---CCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEeCCCCCCHHH
Q 028251           87 DITRRETFNHLSSWLEDARQHA---NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQNVEE  158 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~~  158 (211)
                      |++++.++.....|+..+....   ..+.|+++++||+|+.+..  ..++......     .....++++||++|.|+++
T Consensus        77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~  154 (162)
T cd04157          77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL--TAVKITQLLGLENIKDKPWHIFASNALTGEGLDE  154 (162)
T ss_pred             eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC--CHHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence            9999999888888877765432   2579999999999996532  2233222211     1234589999999999999


Q ss_pred             HHHHHHH
Q 028251          159 AFIKTAA  165 (211)
Q Consensus       159 ~~~~i~~  165 (211)
                      +|++|.+
T Consensus       155 ~~~~l~~  161 (162)
T cd04157         155 GVQWLQA  161 (162)
T ss_pred             HHHHHhc
Confidence            9998854

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.95  E-value=6.8e-27  Score=169.97  Aligned_cols=151  Identities=21%  Similarity=0.298  Sum_probs=118.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEE
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD   87 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   87 (211)
                      +|+++|++|||||||+++|.+. +...+.++.+...  ..+..  ..+.+.+||+||++.+..++..+++.+|++|+|||
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D   75 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD   75 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence            4899999999999999999976 5556667766543  23344  35678999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHH------HHHHHHcC--CcEEEEeCCCC-----
Q 028251           88 ITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEG------EQFAKENG--LLFLEASARTA-----  153 (211)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~------~~~~~~~~--~~~~~~s~~~~-----  153 (211)
                      ++++.++..+..|+..+..... .+.|+++++||.|+.+...  ..+.      ..++.+.+  +.++++||++|     
T Consensus        76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~--~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~  153 (167)
T cd04161          76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALL--GADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKI  153 (167)
T ss_pred             CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCC--HHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcc
Confidence            9999999999989888765432 5799999999999965432  2222      22232222  45788999998     


Q ss_pred             -CCHHHHHHHHHH
Q 028251          154 -QNVEEAFIKTAA  165 (211)
Q Consensus       154 -~~i~~~~~~i~~  165 (211)
                       .|+++.|+||.+
T Consensus       154 ~~g~~~~~~wl~~  166 (167)
T cd04161         154 DPSIVEGLRWLLA  166 (167)
T ss_pred             ccCHHHHHHHHhc
Confidence             899999999975

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>PTZ00099 rab6; Provisional

Probab=99.95  E-value=1.2e-25  Score=164.37  Aligned_cols=141  Identities=42%  Similarity=0.692  Sum_probs=127.3

Q ss_pred             CCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhc
Q 028251           29 KRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA  108 (211)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~  108 (211)
                      +.|.+.+.++.+.++....+.+++..+.+.||||||++.+..++..+++.+|++|+|||++++.+|+.+..|+..+....
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~   82 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER   82 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            35677888999999988888999999999999999999999999999999999999999999999999999999887665


Q ss_pred             CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHH
Q 028251          109 NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ  169 (211)
Q Consensus       109 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~  169 (211)
                      ..+.|+++|+||+|+.+.+.+..+++..++...+..++++||++|.|++++|++|.+.+.+
T Consensus        83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~  143 (176)
T PTZ00099         83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN  143 (176)
T ss_pred             CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            5678999999999997766678888888888888899999999999999999999988754

>PLN00023 GTP-binding protein; Provisional

Probab=99.95  E-value=1.1e-25  Score=175.54  Aligned_cols=140  Identities=24%  Similarity=0.497  Sum_probs=122.1

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECC-------------EEEEEEEEeCCCccchhh
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDG-------------RPIKLQIWDTAGQESFRS   70 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~l~l~D~~G~~~~~~   70 (211)
                      ...+||+|+|+.|||||||+++|.+..+...+.++++.++....+.+++             ..+.+.||||+|++.+..
T Consensus        19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrs   98 (334)
T PLN00023         19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKD   98 (334)
T ss_pred             ccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhh
Confidence            3578999999999999999999999999888889999988877777653             468899999999999999


Q ss_pred             chHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcC------------CCCeEEEEEecCCCCCCC---C---CCHH
Q 028251           71 ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN------------PNMSIMLVGNKCDLAHRR---A---VSKE  132 (211)
Q Consensus        71 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~------------~~~p~ivv~nK~Dl~~~~---~---~~~~  132 (211)
                      ++..+++.+|++|+|||++++.++.++..|+..+.....            .+.|++||+||+|+.+.+   .   ...+
T Consensus        99 L~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e  178 (334)
T PLN00023         99 CRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVD  178 (334)
T ss_pred             hhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccHH
Confidence            999999999999999999999999999999999977531            258999999999996542   2   3578


Q ss_pred             HHHHHHHHcCC
Q 028251          133 EGEQFAKENGL  143 (211)
Q Consensus       133 ~~~~~~~~~~~  143 (211)
                      ++++++.++++
T Consensus       179 ~a~~~A~~~g~  189 (334)
T PLN00023        179 AARQWVEKQGL  189 (334)
T ss_pred             HHHHHHHHcCC
Confidence            89999998875

>cd00879 Sar1 Sar1 subfamily

Probab=99.95  E-value=4.1e-26  Score=169.19  Aligned_cols=157  Identities=27%  Similarity=0.347  Sum_probs=124.0

Q ss_pred             CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028251            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      +....+|+++|++|||||||+++|.+..+. .+.++.+.+.  ..+.+++  ..+.+||+||++.+...+..+++.+|++
T Consensus        16 ~~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~--~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~i   90 (190)
T cd00879          16 YNKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS--EELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGI   90 (190)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEE
Confidence            346789999999999999999999987764 3444544433  3345554  5688999999999888899999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH----------------cCCcE
Q 028251           83 LLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE----------------NGLLF  145 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----------------~~~~~  145 (211)
                      ++|+|+++..++.....|+..+.... ..+.|+++++||+|+..  ....++.+.....                ....+
T Consensus        91 ilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (190)
T cd00879          91 VFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEV  168 (190)
T ss_pred             EEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEE
Confidence            99999999988888888877776543 25799999999999854  3455666655532                22458


Q ss_pred             EEEeCCCCCCHHHHHHHHHHH
Q 028251          146 LEASARTAQNVEEAFIKTAAK  166 (211)
Q Consensus       146 ~~~s~~~~~~i~~~~~~i~~~  166 (211)
                      +++||+++.|++++|++|.+.
T Consensus       169 ~~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         169 FMCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             EEeEecCCCChHHHHHHHHhh
Confidence            999999999999999999865

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.95  E-value=2.3e-26  Score=165.87  Aligned_cols=152  Identities=24%  Similarity=0.408  Sum_probs=117.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEE
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD   87 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   87 (211)
                      +|+++|++|||||||+++|.+..+... .++.+.+.  ..+... ..+.+.+||+||++.+...+..++..+|++|+|+|
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~--~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D   76 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNV--EMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD   76 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcce--EEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence            589999999999999999998887543 45545443  233333 35789999999999999889999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHH------HHcCCcEEEEeCCCCCCHHHHH
Q 028251           88 ITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFA------KENGLLFLEASARTAQNVEEAF  160 (211)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~s~~~~~~i~~~~  160 (211)
                      +.++.++.....|+..+.... ..+.|+++++||+|+...  ...++.....      ...+++++++||++|.|++++|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~  154 (160)
T cd04156          77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF  154 (160)
T ss_pred             CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC--cCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence            999998888888877765432 258999999999998642  2233333221      1234568999999999999999


Q ss_pred             HHHHH
Q 028251          161 IKTAA  165 (211)
Q Consensus       161 ~~i~~  165 (211)
                      ++|.+
T Consensus       155 ~~i~~  159 (160)
T cd04156         155 RKLAS  159 (160)
T ss_pred             HHHhc
Confidence            98864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.94  E-value=3.6e-26  Score=164.56  Aligned_cols=151  Identities=22%  Similarity=0.326  Sum_probs=118.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEE
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD   87 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   87 (211)
                      ||+++|++|||||||++++++... ....++.+.+..  .+.++  ...+.+||+||++.+...+..+++.+|++++|||
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D   75 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVE--TVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD   75 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence            689999999999999999998873 334445454443  23343  4678999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEeCCCCCCHHHHHH
Q 028251           88 ITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQNVEEAFI  161 (211)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~~~~~  161 (211)
                      ++++.++.....|+..+.... ..+.|+++++||+|+....  ..++......     ....+++++|+++|.|++++|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~  153 (158)
T cd00878          76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD  153 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence            999999998888887775533 3589999999999986533  2333333322     2345799999999999999999


Q ss_pred             HHHH
Q 028251          162 KTAA  165 (211)
Q Consensus       162 ~i~~  165 (211)
                      +|..
T Consensus       154 ~l~~  157 (158)
T cd00878         154 WLLQ  157 (158)
T ss_pred             HHhh
Confidence            8864

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.94  E-value=7.5e-26  Score=164.27  Aligned_cols=152  Identities=27%  Similarity=0.390  Sum_probs=116.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCCC------CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRFQ------PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      +|+++|++|+|||||+++|.+....      ..+.++.+...  ..+.++  ...+.+||+||++.+...+..++..+|+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   76 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA   76 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            5899999999999999999864321      12233433333  234444  4678999999999999999999999999


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-------cCCcEEEEeCCCC
Q 028251           82 ALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-------NGLLFLEASARTA  153 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~s~~~~  153 (211)
                      +++|+|+.++.++.....|+..+.+.. ..+.|+++++||+|+...  ...++...+...       .+++++++||++|
T Consensus        77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  154 (167)
T cd04160          77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG  154 (167)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence            999999999988888888877765532 358999999999998653  333444444332       2457999999999


Q ss_pred             CCHHHHHHHHHH
Q 028251          154 QNVEEAFIKTAA  165 (211)
Q Consensus       154 ~~i~~~~~~i~~  165 (211)
                      .|+++++++|.+
T Consensus       155 ~gv~e~~~~l~~  166 (167)
T cd04160         155 TGVREGIEWLVE  166 (167)
T ss_pred             cCHHHHHHHHhc
Confidence            999999998864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04151 Arl1 Arl1 subfamily

Probab=99.94  E-value=9.5e-26  Score=162.45  Aligned_cols=151  Identities=23%  Similarity=0.326  Sum_probs=113.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEE
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD   87 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   87 (211)
                      ||+++|++++|||||+++|..+.+.. ..++.+.+..  .+..  ....+.+||+||++.+...+..+++.+|++|+|+|
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d   75 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD   75 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence            68999999999999999998776653 3445444432  2333  45678999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHH-hcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEeCCCCCCHHHHHH
Q 028251           88 ITRRETFNHLSSWLEDARQ-HANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQNVEEAFI  161 (211)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~~~~~  161 (211)
                      ++++.++.....++..+.. ....+.|+++++||+|+.+..  ...+......     ..+.+++++||+++.|++++|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  153 (158)
T cd04151          76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD  153 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence            9998887766665554432 223579999999999986432  2233222211     1234699999999999999999


Q ss_pred             HHHH
Q 028251          162 KTAA  165 (211)
Q Consensus       162 ~i~~  165 (211)
                      +|.+
T Consensus       154 ~l~~  157 (158)
T cd04151         154 WLVN  157 (158)
T ss_pred             HHhc
Confidence            9865

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.94  E-value=9.2e-26  Score=165.09  Aligned_cols=159  Identities=29%  Similarity=0.448  Sum_probs=124.3

Q ss_pred             CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028251            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      .+...++|+++|+.|||||||+++|....... ..||.|.+.  ..+.+++  ..+.+||.+|+..+...|..++..+|+
T Consensus        10 ~~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~~--~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~   84 (175)
T PF00025_consen   10 SKKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFNI--EEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADG   84 (175)
T ss_dssp             TTTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEEE--EEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESE
T ss_pred             ccCcEEEEEEECCCccchHHHHHHhhhccccc-cCccccccc--ceeeeCc--EEEEEEeccccccccccceeeccccce
Confidence            35788999999999999999999998765433 344444443  3345554  567899999999999999999999999


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH------cCCcEEEEeCCCCC
Q 028251           82 ALLVYDITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE------NGLLFLEASARTAQ  154 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~s~~~~~  154 (211)
                      +|||+|.++++.+......+..+... ...+.|++|++||.|+++  .+..+++......      ..+.++.+|+.+|+
T Consensus        85 iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~--~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~  162 (175)
T PF00025_consen   85 IIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD--AMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGE  162 (175)
T ss_dssp             EEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT--SSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTB
T ss_pred             eEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccC--cchhhHHHhhhhhhhcccCCceEEEeeeccCCc
Confidence            99999999988887777666665443 235899999999999865  3455665554432      23458999999999


Q ss_pred             CHHHHHHHHHHHH
Q 028251          155 NVEEAFIKTAAKI  167 (211)
Q Consensus       155 ~i~~~~~~i~~~~  167 (211)
                      |+.+.++||.+.+
T Consensus       163 Gv~e~l~WL~~~~  175 (175)
T PF00025_consen  163 GVDEGLEWLIEQI  175 (175)
T ss_dssp             THHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhcC
Confidence            9999999998764

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.94  E-value=3.8e-25  Score=163.20  Aligned_cols=157  Identities=20%  Similarity=0.269  Sum_probs=121.0

Q ss_pred             CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028251            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      +...++|+++|.+|||||||+++|.+..+.. +.++.+.+.  ..+.++  ++.+.+||+||+..+...+..++..+|++
T Consensus        14 ~~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~i   88 (184)
T smart00178       14 WNKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTS--EELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNGI   88 (184)
T ss_pred             ccccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence            3567999999999999999999999876643 233433332  223343  46788999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH------------cCCcEEEEe
Q 028251           83 LLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE------------NGLLFLEAS  149 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~s  149 (211)
                      |+|+|++++.++.....++..+.... ..+.|+++++||.|++.  .++.+++......            ....++++|
T Consensus        89 i~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~S  166 (184)
T smart00178       89 VYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCS  166 (184)
T ss_pred             EEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEee
Confidence            99999999998888877777665432 25789999999999854  3455555543321            123489999


Q ss_pred             CCCCCCHHHHHHHHHHH
Q 028251          150 ARTAQNVEEAFIKTAAK  166 (211)
Q Consensus       150 ~~~~~~i~~~~~~i~~~  166 (211)
                      |+++.|+++++++|.+.
T Consensus       167 a~~~~g~~~~~~wl~~~  183 (184)
T smart00178      167 VVRRMGYGEGFKWLSQY  183 (184)
T ss_pred             cccCCChHHHHHHHHhh
Confidence            99999999999999764

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.93  E-value=9.2e-25  Score=151.15  Aligned_cols=160  Identities=21%  Similarity=0.349  Sum_probs=125.9

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      +..++|+++|..|+||||++++|.+.. .....|+.+.  .+++..++  .+++++||.+|+...+..|.+||..+|++|
T Consensus        14 erE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf--~Iktl~~~--~~~L~iwDvGGq~~lr~~W~nYfestdglI   88 (185)
T KOG0073|consen   14 EREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGF--QIKTLEYK--GYTLNIWDVGGQKTLRSYWKNYFESTDGLI   88 (185)
T ss_pred             hheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccce--eeEEEEec--ceEEEEEEcCCcchhHHHHHHhhhccCeEE
Confidence            568999999999999999999999776 2333344444  44444444  567899999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHH-HhcCCCCeEEEEEecCCCCCCCCCCHHH------HHHHHHHcCCcEEEEeCCCCCCH
Q 028251           84 LVYDITRRETFNHLSSWLEDAR-QHANPNMSIMLVGNKCDLAHRRAVSKEE------GEQFAKENGLLFLEASARTAQNV  156 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~p~ivv~nK~Dl~~~~~~~~~~------~~~~~~~~~~~~~~~s~~~~~~i  156 (211)
                      +|+|.+|+..++.....+..+. .....+.|++|++||.|++..  .+.++      .+.++..+.++++.||+.+|+++
T Consensus        89 wvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~--l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l  166 (185)
T KOG0073|consen   89 WVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGA--LSLEEISKALDLEELAKSHHWRLVKCSAVTGEDL  166 (185)
T ss_pred             EEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccc--cCHHHHHHhhCHHHhccccCceEEEEeccccccH
Confidence            9999999988877666555443 333368999999999999632  22333      33455567889999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 028251          157 EEAFIKTAAKILQN  170 (211)
Q Consensus       157 ~~~~~~i~~~~~~~  170 (211)
                      .+.++|+...+.++
T Consensus       167 ~~gidWL~~~l~~r  180 (185)
T KOG0073|consen  167 LEGIDWLCDDLMSR  180 (185)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988774

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.93  E-value=5.9e-25  Score=157.63  Aligned_cols=152  Identities=22%  Similarity=0.335  Sum_probs=119.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEE
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD   87 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   87 (211)
                      .|+++|++|||||||+++|.+..+...+.++.+.....  +...  .+.+.+||+||++.+...+..++..+|++++|+|
T Consensus         1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d   76 (159)
T cd04159           1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKG--NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD   76 (159)
T ss_pred             CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEEC--CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence            37999999999999999999999888887777766543  3333  3778999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHH-----HHcCCcEEEEeCCCCCCHHHHHH
Q 028251           88 ITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFA-----KENGLLFLEASARTAQNVEEAFI  161 (211)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i~~~~~  161 (211)
                      ++++.++.....|+..+.... ..+.|+++++||.|+.+...  .+......     ....++++++|++++.|++++++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  154 (159)
T cd04159          77 AADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLD  154 (159)
T ss_pred             CCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HHHHHHHhCcccccCCceEEEEEEeccCCChHHHHH
Confidence            999988888777776664422 25789999999999865322  22222211     11335789999999999999999


Q ss_pred             HHHH
Q 028251          162 KTAA  165 (211)
Q Consensus       162 ~i~~  165 (211)
                      +|.+
T Consensus       155 ~l~~  158 (159)
T cd04159         155 WLIK  158 (159)
T ss_pred             HHhh
Confidence            9865

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd01890 LepA LepA subfamily

Probab=99.93  E-value=1.1e-24  Score=159.85  Aligned_cols=154  Identities=25%  Similarity=0.301  Sum_probs=113.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC-------CCCCCCC------CeeeEEEEEEEEE-----CCEEEEEEEEeCCCccchh
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR-------FQPVHDL------TIGVEFGARMVTI-----DGRPIKLQIWDTAGQESFR   69 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~-------~~~~~~~------~~~~~~~~~~~~~-----~~~~~~l~l~D~~G~~~~~   69 (211)
                      +|+++|++++|||||+++|++..       +...+.+      +.+.++....+.+     ++..+.+.+|||||++.+.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            68999999999999999998742       1111111      1234444333333     6677889999999999999


Q ss_pred             hchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC---cEE
Q 028251           70 SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL---LFL  146 (211)
Q Consensus        70 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~  146 (211)
                      ..+..++..+|++|+|||++++.+......|....    ..+.|+++++||+|+.+..  ..+...+++...++   .++
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~  155 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI  155 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence            99999999999999999999876665555554322    1378999999999985422  12233445555555   389


Q ss_pred             EEeCCCCCCHHHHHHHHHHHH
Q 028251          147 EASARTAQNVEEAFIKTAAKI  167 (211)
Q Consensus       147 ~~s~~~~~~i~~~~~~i~~~~  167 (211)
                      ++||++|.|++++|++|.+.+
T Consensus       156 ~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         156 LVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             EeeccCCCCHHHHHHHHHhhC
Confidence            999999999999999998764

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.93  E-value=1.3e-24  Score=157.89  Aligned_cols=156  Identities=22%  Similarity=0.192  Sum_probs=108.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchh---------hchHHHhc
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR---------SITRSYYR   77 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~---------~~~~~~~~   77 (211)
                      .+|+++|.+|+|||||+++|.+..+.....+..+.......  +....+.+.+|||||.....         ........
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~   78 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGH--FDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH   78 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEE--EccCceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence            47999999999999999999988764332222222232222  23335678999999974211         11111223


Q ss_pred             cccEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCC
Q 028251           78 GAAGALLVYDITRRETF--NHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQN  155 (211)
Q Consensus        78 ~~d~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  155 (211)
                      ..|++|+|+|++++.++  .....|+..+.... .+.|+++++||+|+.......  +...+....+.+++++||+++.|
T Consensus        79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~g  155 (168)
T cd01897          79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDLS--EIEEEEELEGEEVLKISTLTEEG  155 (168)
T ss_pred             ccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhHH--HHHHhhhhccCceEEEEecccCC
Confidence            46899999999987543  55556777765543 379999999999996543322  24455555677899999999999


Q ss_pred             HHHHHHHHHHHH
Q 028251          156 VEEAFIKTAAKI  167 (211)
Q Consensus       156 i~~~~~~i~~~~  167 (211)
                      ++++++++.+.+
T Consensus       156 i~~l~~~l~~~~  167 (168)
T cd01897         156 VDEVKNKACELL  167 (168)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998876

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd01898 Obg Obg subfamily

Probab=99.93  E-value=2e-24  Score=157.17  Aligned_cols=157  Identities=18%  Similarity=0.150  Sum_probs=110.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc----hhhchHHH---hcccc
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES----FRSITRSY---YRGAA   80 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~----~~~~~~~~---~~~~d   80 (211)
                      +|+++|.+|||||||+|+|.+........+..+.......+.+++. ..+.+|||||...    .......+   +..+|
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d   80 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR   80 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence            6899999999999999999976543222222122222222333332 4688999999632    11233333   34699


Q ss_pred             EEEEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-cCCcEEEEeCCCCCCH
Q 028251           81 GALLVYDITRR-ETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNV  156 (211)
Q Consensus        81 ~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~i  156 (211)
                      ++++|+|++++ .++..+..|.+.+.....  .+.|+++|+||+|+...... .+....+... .+.+++++|++++.|+
T Consensus        81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi  159 (170)
T cd01898          81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEGL  159 (170)
T ss_pred             EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence            99999999998 788888888888866542  47899999999998654433 3344445544 3678999999999999


Q ss_pred             HHHHHHHHHH
Q 028251          157 EEAFIKTAAK  166 (211)
Q Consensus       157 ~~~~~~i~~~  166 (211)
                      +++|++|.+.
T Consensus       160 ~~l~~~i~~~  169 (170)
T cd01898         160 DELLRKLAEL  169 (170)
T ss_pred             HHHHHHHHhh
Confidence            9999998765

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.93  E-value=1e-23  Score=150.78  Aligned_cols=158  Identities=33%  Similarity=0.493  Sum_probs=126.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+++|++|+|||||+++|....+...+.++.+.+.....+..++..+.+.+||+||+..+...+..++..+++++.+
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            37999999999999999999999887777777778887777677887778899999999999999899999999999999


Q ss_pred             EECCCH-HHHHHHH-HHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Q 028251           86 YDITRR-ETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT  163 (211)
Q Consensus        86 ~d~~~~-~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i  163 (211)
                      +|+... .++.... .|...+......+.|+++++||.|+.... ........+......+++++||+++.|+.+++++|
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l  159 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV  159 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence            999876 5565554 56665555544488999999999996543 23333333444455679999999999999999876


Q ss_pred             H
Q 028251          164 A  164 (211)
Q Consensus       164 ~  164 (211)
                      .
T Consensus       160 ~  160 (161)
T TIGR00231       160 E  160 (161)
T ss_pred             h
Confidence            3

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd01878 HflX HflX subfamily

Probab=99.93  E-value=2.1e-24  Score=161.80  Aligned_cols=156  Identities=19%  Similarity=0.169  Sum_probs=113.6

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc---------hhhchHH
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES---------FRSITRS   74 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~---------~~~~~~~   74 (211)
                      ++.++|+|+|++|||||||++++++..+.....+..+.+.....+.+++. ..+.+|||||...         +... ..
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~-~~  116 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRST-LE  116 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHH-HH
Confidence            45689999999999999999999988754433333334444444444443 2688999999732         1111 12


Q ss_pred             HhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCC
Q 028251           75 YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQ  154 (211)
Q Consensus        75 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  154 (211)
                      .+..+|++++|+|++++.++.....|...+......+.|+++|+||+|+.+....     .......+.+++++||+++.
T Consensus       117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~-----~~~~~~~~~~~~~~Sa~~~~  191 (204)
T cd01878         117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEEL-----EERLEAGRPDAVFISAKTGE  191 (204)
T ss_pred             HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHH-----HHHhhcCCCceEEEEcCCCC
Confidence            3568999999999999888877777777766655457899999999998653321     13344456789999999999


Q ss_pred             CHHHHHHHHHHH
Q 028251          155 NVEEAFIKTAAK  166 (211)
Q Consensus       155 ~i~~~~~~i~~~  166 (211)
                      |+++++++|.+.
T Consensus       192 gi~~l~~~L~~~  203 (204)
T cd01878         192 GLDELLEAIEEL  203 (204)
T ss_pred             CHHHHHHHHHhh
Confidence            999999998765

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.92  E-value=9.1e-24  Score=168.13  Aligned_cols=163  Identities=15%  Similarity=0.082  Sum_probs=120.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc-------hhhchHHHhcc
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES-------FRSITRSYYRG   78 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~-------~~~~~~~~~~~   78 (211)
                      ...|+|+|.++||||||+++|+.........+.++.......+.+.+ ...+.+||+||...       ........+..
T Consensus       158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie~  236 (335)
T PRK12299        158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIER  236 (335)
T ss_pred             cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence            45799999999999999999997664433334434454444455532 23578999999642       11122334567


Q ss_pred             ccEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCH
Q 028251           79 AAGALLVYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNV  156 (211)
Q Consensus        79 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  156 (211)
                      ++++|+|+|+++.++++.+..|..++..+..  .++|+++|+||+|+.+......++...++...+.+++++||+++.|+
T Consensus       237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI  316 (335)
T PRK12299        237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGL  316 (335)
T ss_pred             cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCH
Confidence            8999999999987788888899888877643  47899999999999754433333445555556788999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028251          157 EEAFIKTAAKILQ  169 (211)
Q Consensus       157 ~~~~~~i~~~~~~  169 (211)
                      ++++++|.+.+.+
T Consensus       317 ~eL~~~L~~~l~~  329 (335)
T PRK12299        317 DELLRALWELLEE  329 (335)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999888754

>cd04171 SelB SelB subfamily

Probab=99.92  E-value=8.7e-24  Score=152.70  Aligned_cols=152  Identities=20%  Similarity=0.170  Sum_probs=104.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCC---CCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKR---FQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      +.|+++|++|||||||+++|.+..   +.....+..+.+.....+.+.. ...+.+|||||++.+......++..+|+++
T Consensus         1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii   79 (164)
T cd04171           1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL   79 (164)
T ss_pred             CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence            368999999999999999999643   2222223334444444444442 357899999999988777777888999999


Q ss_pred             EEEECCC---HHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCC--CCHHHHHHHHHH---cCCcEEEEeCCCCCC
Q 028251           84 LVYDITR---RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA--VSKEEGEQFAKE---NGLLFLEASARTAQN  155 (211)
Q Consensus        84 ~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~---~~~~~~~~s~~~~~~  155 (211)
                      +|+|+++   +.+...+    ..+....  ..|+++++||+|+.+...  ...++..+....   .+.+++++|++++.|
T Consensus        80 ~V~d~~~~~~~~~~~~~----~~~~~~~--~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  153 (164)
T cd04171          80 LVVAADEGIMPQTREHL----EILELLG--IKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG  153 (164)
T ss_pred             EEEECCCCccHhHHHHH----HHHHHhC--CCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence            9999987   3333222    2222221  349999999999965321  112333344443   467899999999999


Q ss_pred             HHHHHHHHHH
Q 028251          156 VEEAFIKTAA  165 (211)
Q Consensus       156 i~~~~~~i~~  165 (211)
                      ++++++.+.+
T Consensus       154 v~~l~~~l~~  163 (164)
T cd04171         154 IEELKEYLDE  163 (164)
T ss_pred             HHHHHHHHhh
Confidence            9999988754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd04155 Arl3 Arl3 subfamily

Probab=99.92  E-value=3.6e-23  Score=151.05  Aligned_cols=154  Identities=22%  Similarity=0.342  Sum_probs=114.7

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ..++|+++|++|||||||++++.+..+.. ..++.+.+.  ..+.+++  ..+.+||+||+..+...+..+++.+|++++
T Consensus        13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~~--~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~   87 (173)
T cd04155          13 EEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFNI--KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIY   87 (173)
T ss_pred             CccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence            46899999999999999999999876543 344445433  2344454  568899999999888888899999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC-----CcEEEEeCCCCCCHHH
Q 028251           85 VYDITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG-----LLFLEASARTAQNVEE  158 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~~s~~~~~~i~~  158 (211)
                      |+|+.+..++.....++..+... ...+.|+++++||+|+.+..  ..++.........     .+++++||++|.|+++
T Consensus        88 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~  165 (173)
T cd04155          88 VIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA--PAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQE  165 (173)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC--CHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHH
Confidence            99999988888777776655432 22479999999999985432  2222222211111     2478999999999999


Q ss_pred             HHHHHHH
Q 028251          159 AFIKTAA  165 (211)
Q Consensus       159 ~~~~i~~  165 (211)
                      +|++|.+
T Consensus       166 ~~~~l~~  172 (173)
T cd04155         166 GMNWVCK  172 (173)
T ss_pred             HHHHHhc
Confidence            9999864

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.92  E-value=6.5e-23  Score=155.23  Aligned_cols=170  Identities=39%  Similarity=0.548  Sum_probs=138.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+++|++|||||||+++|..+.+...+.++.+..+...........+.+.+|||+|++++..++..++..++++++|
T Consensus         5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~   84 (219)
T COG1100           5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV   84 (219)
T ss_pred             eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence            48999999999999999999999999999999888888777776666688899999999999999999999999999999


Q ss_pred             EECCC-HHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCC------------CCCHHHHHHHHHHc---CCcEEEEe
Q 028251           86 YDITR-RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR------------AVSKEEGEQFAKEN---GLLFLEAS  149 (211)
Q Consensus        86 ~d~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~---~~~~~~~s  149 (211)
                      +|..+ ...++....|+..+........|+++++||+|+....            ..............   ...++++|
T Consensus        85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  164 (219)
T COG1100          85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS  164 (219)
T ss_pred             EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence            99999 5556667788888877765579999999999997653            22222222222222   23389999


Q ss_pred             CC--CCCCHHHHHHHHHHHHHHHHhhcc
Q 028251          150 AR--TAQNVEEAFIKTAAKILQNIQEGA  175 (211)
Q Consensus       150 ~~--~~~~i~~~~~~i~~~~~~~~~~~~  175 (211)
                      ++  .+.++.++|..+.+.+.+......
T Consensus       165 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~  192 (219)
T COG1100         165 AKSLTGPNVNELFKELLRKLLEEIEKLV  192 (219)
T ss_pred             cccCCCcCHHHHHHHHHHHHHHhhhhhh
Confidence            99  999999999999999876655433

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.91  E-value=1.1e-23  Score=149.00  Aligned_cols=134  Identities=21%  Similarity=0.208  Sum_probs=98.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcc-----chhhchHHHhccccEE
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE-----SFRSITRSYYRGAAGA   82 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~-----~~~~~~~~~~~~~d~~   82 (211)
                      ||+++|++|+|||||+++|.+..+.  +.++.+.+       +..     .+|||||..     .+..+. ..++.+|++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~-------~~~-----~~iDt~G~~~~~~~~~~~~~-~~~~~ad~v   66 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVE-------YND-----GAIDTPGEYVENRRLYSALI-VTAADADVI   66 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc--cccceeEE-------EcC-----eeecCchhhhhhHHHHHHHH-HHhhcCCEE
Confidence            7999999999999999999977652  22232222       221     589999972     233333 357899999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEeCCCCCCHHHHHH
Q 028251           83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFI  161 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~~  161 (211)
                      |+|||++++.++.. ..|...+      ..|+++++||+|+.+. ....++..+++...+. +++++||+++.|++++|+
T Consensus        67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  138 (142)
T TIGR02528        67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAEA-DVDIERAKELLETAGAEPIFEISSVDEQGLEALVD  138 (142)
T ss_pred             EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCCc-ccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence            99999999887654 2343221      3499999999998653 3455666777777776 799999999999999998


Q ss_pred             HHH
Q 028251          162 KTA  164 (211)
Q Consensus       162 ~i~  164 (211)
                      +|.
T Consensus       139 ~l~  141 (142)
T TIGR02528       139 YLN  141 (142)
T ss_pred             HHh
Confidence            874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=2.5e-23  Score=147.58  Aligned_cols=159  Identities=19%  Similarity=0.298  Sum_probs=129.3

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ....+|+++|-.++||||++.+|..+..... .|+.|.......+  .  ++++.+||.+|++.++.+|..|+++.+++|
T Consensus        15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~y--k--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI   89 (181)
T KOG0070|consen   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEY--K--NISFTVWDVGGQEKLRPLWKHYFQNTQGLI   89 (181)
T ss_pred             cceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEE--c--ceEEEEEecCCCcccccchhhhccCCcEEE
Confidence            3578999999999999999999988777666 6777776665444  3  778999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHc-----CCcEEEEeCCCCCCHH
Q 028251           84 LVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN-----GLLFLEASARTAQNVE  157 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~s~~~~~~i~  157 (211)
                      ||+|.+|++.+...+..+..+..... .+.|+++++||.|++..  ++..++.+.....     ...+..++|.+|+|+.
T Consensus        90 fVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~a--ls~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~  167 (181)
T KOG0070|consen   90 FVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGA--LSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLY  167 (181)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcccc--CCHHHHHhHhhhhccCCCCcEEeeccccccccHH
Confidence            99999999988887776666655443 68999999999999763  4445554443332     3448899999999999


Q ss_pred             HHHHHHHHHHHH
Q 028251          158 EAFIKTAAKILQ  169 (211)
Q Consensus       158 ~~~~~i~~~~~~  169 (211)
                      +.++++.+.+..
T Consensus       168 egl~wl~~~~~~  179 (181)
T KOG0070|consen  168 EGLDWLSNNLKK  179 (181)
T ss_pred             HHHHHHHHHHhc
Confidence            999999988754

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.91  E-value=1.1e-22  Score=144.05  Aligned_cols=153  Identities=49%  Similarity=0.828  Sum_probs=121.4

Q ss_pred             EEcCCCCCHHHHHHHHHhCCC-CCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEECC
Q 028251           11 IIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT   89 (211)
Q Consensus        11 vvG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~   89 (211)
                      |+|++|+|||||++++.+... .....++. .+..............+.+||+||...+...+..+++.+|++++|+|++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   79 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT   79 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence            589999999999999998877 44444443 6666666777777889999999999988888888999999999999999


Q ss_pred             CHHHHHHHHHHH-HHHHHhcCCCCeEEEEEecCCCCCCCCCCHHH-HHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Q 028251           90 RRETFNHLSSWL-EDARQHANPNMSIMLVGNKCDLAHRRAVSKEE-GEQFAKENGLLFLEASARTAQNVEEAFIKTA  164 (211)
Q Consensus        90 ~~~~~~~~~~~~-~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~  164 (211)
                      ++.++.....|+ .........+.|+++++||+|+.......... ..........+++++|+.++.++++++++|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882          80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            999888888773 33333444689999999999986544333222 3344555678899999999999999999875

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.91  E-value=5.8e-23  Score=147.58  Aligned_cols=147  Identities=20%  Similarity=0.220  Sum_probs=109.7

Q ss_pred             EEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh------chHHHhc--cccEE
Q 028251           11 IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS------ITRSYYR--GAAGA   82 (211)
Q Consensus        11 vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~------~~~~~~~--~~d~~   82 (211)
                      |+|.+|+|||||++++.+..+.....+..+.+.....+.+++  ..+.+|||||+..+..      +...++.  .+|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            589999999999999998865554445555665555566665  4688999999876554      3455564  89999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Q 028251           83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK  162 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  162 (211)
                      |+|+|+.+++...   .|+..+..   .+.|+++++||+|+.+..... .....+....+.+++++|+.++.|++++++.
T Consensus        79 i~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~  151 (158)
T cd01879          79 VNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAEKRGIK-IDLDKLSELLGVPVVPTSARKGEGIDELKDA  151 (158)
T ss_pred             EEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhcccccch-hhHHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence            9999998864422   33333332   378999999999997654333 2345666667889999999999999999998


Q ss_pred             HHHH
Q 028251          163 TAAK  166 (211)
Q Consensus       163 i~~~  166 (211)
                      +.+.
T Consensus       152 l~~~  155 (158)
T cd01879         152 IAEL  155 (158)
T ss_pred             HHHH
Confidence            8775

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.91  E-value=6.4e-23  Score=148.84  Aligned_cols=156  Identities=17%  Similarity=0.164  Sum_probs=109.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEEC-CEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID-GRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      .|+++|++|+|||||+++|....+.....+..+.+.....+..+ +....+.+|||||++.+...+...+..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            58999999999999999999888766544444444443334333 13567899999999998888888899999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCH-HHHHHHHH------HcCCcEEEEeCCCCCCHHHH
Q 028251           87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK-EEGEQFAK------ENGLLFLEASARTAQNVEEA  159 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~-~~~~~~~~------~~~~~~~~~s~~~~~~i~~~  159 (211)
                      |+++....... ..+..+..   .+.|+++++||+|+........ +....+..      ....+++++|++++.|++++
T Consensus        82 d~~~~~~~~~~-~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  157 (168)
T cd01887          82 AADDGVMPQTI-EAIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL  157 (168)
T ss_pred             ECCCCccHHHH-HHHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence            99884321111 11222222   3789999999999864321111 11111111      12357999999999999999


Q ss_pred             HHHHHHHH
Q 028251          160 FIKTAAKI  167 (211)
Q Consensus       160 ~~~i~~~~  167 (211)
                      +++|.+..
T Consensus       158 ~~~l~~~~  165 (168)
T cd01887         158 LEAILLLA  165 (168)
T ss_pred             HHHHHHhh
Confidence            99998765

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.91  E-value=3.5e-23  Score=153.97  Aligned_cols=149  Identities=20%  Similarity=0.195  Sum_probs=106.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHh--CCCCCCC------------CCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhch
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTD--KRFQPVH------------DLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSIT   72 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~   72 (211)
                      -+|+++|.+++|||||+++|+.  +.+....            ..+.+.++......++.....+.+|||||++.+...+
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            3799999999999999999997  4443332            1234555555555666667789999999999999999


Q ss_pred             HHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCC-CCHHHHHHHHH-------HcCCc
Q 028251           73 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA-VSKEEGEQFAK-------ENGLL  144 (211)
Q Consensus        73 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~-------~~~~~  144 (211)
                      ..+++.+|++++|||+.+.. +.....++..+..   .+.|+++++||+|+..... ...++...+..       ..+++
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP  158 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence            99999999999999998742 2222333333322   3789999999999964321 11233444432       23678


Q ss_pred             EEEEeCCCCCCHHHH
Q 028251          145 FLEASARTAQNVEEA  159 (211)
Q Consensus       145 ~~~~s~~~~~~i~~~  159 (211)
                      ++++||++|.|+.+.
T Consensus       159 iv~~Sa~~g~~~~~~  173 (194)
T cd01891         159 VLYASAKNGWASLNL  173 (194)
T ss_pred             EEEeehhcccccccc
Confidence            999999999887443

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.90  E-value=2.2e-22  Score=160.14  Aligned_cols=160  Identities=17%  Similarity=0.143  Sum_probs=116.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchh----hchHHH---hcc
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR----SITRSY---YRG   78 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~----~~~~~~---~~~   78 (211)
                      ...|+|+|.++||||||+++|..........+.++.......+.+++ ...+.+||+||.....    .+...+   +..
T Consensus       157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhier  235 (329)
T TIGR02729       157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIER  235 (329)
T ss_pred             cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence            46799999999999999999998764333333334444444455543 3567899999974321    233333   456


Q ss_pred             ccEEEEEEECCCH---HHHHHHHHHHHHHHHhcC--CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCC
Q 028251           79 AAGALLVYDITRR---ETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTA  153 (211)
Q Consensus        79 ~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  153 (211)
                      +|++++|+|+++.   .+++.+..|.+++..+..  .+.|++||+||+|+.+... ..+..+.+....+.+++++||+++
T Consensus       236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg  314 (329)
T TIGR02729       236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTG  314 (329)
T ss_pred             hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCC
Confidence            9999999999976   677788888877766532  4789999999999965432 223444555566788999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 028251          154 QNVEEAFIKTAAKI  167 (211)
Q Consensus       154 ~~i~~~~~~i~~~~  167 (211)
                      .|+++++++|.+.+
T Consensus       315 ~GI~eL~~~I~~~l  328 (329)
T TIGR02729       315 EGLDELLYALAELL  328 (329)
T ss_pred             cCHHHHHHHHHHHh
Confidence            99999999988754

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.90  E-value=3.6e-23  Score=146.60  Aligned_cols=148  Identities=21%  Similarity=0.254  Sum_probs=103.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc------hhhchHHHh--cc
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES------FRSITRSYY--RG   78 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~------~~~~~~~~~--~~   78 (211)
                      ++|+++|.|++|||||+|+|++........|.++.+.....+.+.+  ..+.++|+||.-.      .......++  ..
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            6899999999999999999999986555555556666666667766  4578999999322      122334444  68


Q ss_pred             ccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Q 028251           79 AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEE  158 (211)
Q Consensus        79 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  158 (211)
                      .|++|+|+|+++.+.-.+   +...+..   .+.|+++++||+|......+. ...+.+.+..+++++++||+++.|+++
T Consensus        79 ~D~ii~VvDa~~l~r~l~---l~~ql~e---~g~P~vvvlN~~D~a~~~g~~-id~~~Ls~~Lg~pvi~~sa~~~~g~~~  151 (156)
T PF02421_consen   79 PDLIIVVVDATNLERNLY---LTLQLLE---LGIPVVVVLNKMDEAERKGIE-IDAEKLSERLGVPVIPVSARTGEGIDE  151 (156)
T ss_dssp             SSEEEEEEEGGGHHHHHH---HHHHHHH---TTSSEEEEEETHHHHHHTTEE-E-HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred             CCEEEEECCCCCHHHHHH---HHHHHHH---cCCCEEEEEeCHHHHHHcCCE-ECHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence            999999999987543222   2223333   389999999999986543332 235666677899999999999999999


Q ss_pred             HHHHH
Q 028251          159 AFIKT  163 (211)
Q Consensus       159 ~~~~i  163 (211)
                      +++.|
T Consensus       152 L~~~I  156 (156)
T PF02421_consen  152 LKDAI  156 (156)
T ss_dssp             HHHHH
T ss_pred             HHhhC
Confidence            98765

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.90  E-value=1.9e-22  Score=161.76  Aligned_cols=154  Identities=21%  Similarity=0.185  Sum_probs=111.7

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcc---------chhhchHHH
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE---------SFRSITRSY   75 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~---------~~~~~~~~~   75 (211)
                      ..++|+++|.+|+|||||+|+|++........+..+.+.....+.+++ ...+.+|||||..         .+.. ....
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~-tle~  265 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRA-TLEE  265 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHH-HHHH
Confidence            458999999999999999999998875443333334555555566643 2368899999972         2222 2234


Q ss_pred             hccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCC
Q 028251           76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQN  155 (211)
Q Consensus        76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  155 (211)
                      +..+|++++|+|++++.+...+..|...+......+.|+++|+||+|+.+..     ..... .....+++++||+++.|
T Consensus       266 ~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~-----~v~~~-~~~~~~~i~iSAktg~G  339 (351)
T TIGR03156       266 VREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEP-----RIERL-EEGYPEAVFVSAKTGEG  339 (351)
T ss_pred             HHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChH-----hHHHH-HhCCCCEEEEEccCCCC
Confidence            7899999999999998887777766666665544578999999999986422     11111 11234689999999999


Q ss_pred             HHHHHHHHHHH
Q 028251          156 VEEAFIKTAAK  166 (211)
Q Consensus       156 i~~~~~~i~~~  166 (211)
                      ++++++.|.+.
T Consensus       340 I~eL~~~I~~~  350 (351)
T TIGR03156       340 LDLLLEAIAER  350 (351)
T ss_pred             HHHHHHHHHhh
Confidence            99999988754

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.90  E-value=3e-22  Score=137.21  Aligned_cols=173  Identities=24%  Similarity=0.327  Sum_probs=142.5

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCC--CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccch-hhchHHHhccccE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ--PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF-RSITRSYYRGAAG   81 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~-~~~~~~~~~~~d~   81 (211)
                      ...||+|+|..++|||+++..|+.+...  .+..++....+.....+-++..-.+.|+||+|.... ..+...|+..+|+
T Consensus         8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa   87 (198)
T KOG3883|consen    8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA   87 (198)
T ss_pred             cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence            4579999999999999999999865543  344556554454444444666678999999997666 6788999999999


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHH
Q 028251           82 ALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF  160 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~  160 (211)
                      +++|||..|+++|+.+..+...|.+..+ ..+|++|++||+|+.++.+...+-+..|+....+.++++++.+...+.+.|
T Consensus        88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf  167 (198)
T KOG3883|consen   88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPF  167 (198)
T ss_pred             EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhHH
Confidence            9999999999999998887777766554 679999999999999888899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcccc
Q 028251          161 IKTAAKILQNIQEGALD  177 (211)
Q Consensus       161 ~~i~~~~~~~~~~~~~~  177 (211)
                      ..+...+...+.+....
T Consensus       168 ~~l~~rl~~pqskS~Fp  184 (198)
T KOG3883|consen  168 TYLASRLHQPQSKSTFP  184 (198)
T ss_pred             HHHHHhccCCcccccCc
Confidence            99988886655544433

>PRK04213 GTP-binding protein; Provisional

Probab=99.90  E-value=3.2e-23  Score=155.03  Aligned_cols=151  Identities=21%  Similarity=0.225  Sum_probs=102.1

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCC-----------ccchhhchH
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG-----------QESFRSITR   73 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G-----------~~~~~~~~~   73 (211)
                      ..++|+++|.+|+|||||+|+|.+..+.....+  +.+.....+.+.    .+.+|||||           ++.+...+.
T Consensus         8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~--~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   81 (201)
T PRK04213          8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRP--GVTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIV   81 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCC--ceeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHH
Confidence            468999999999999999999998876544444  444444444333    478999999           455555555


Q ss_pred             HHhc----cccEEEEEEECCCHHHH----H------HHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHH
Q 028251           74 SYYR----GAAGALLVYDITRRETF----N------HLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK  139 (211)
Q Consensus        74 ~~~~----~~d~~i~v~d~~~~~~~----~------~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~  139 (211)
                      .++.    .++++++|+|..+....    .      ....++..+.   ..+.|+++|+||+|+.+..   .+...++..
T Consensus        82 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~---~~~~~~~~~  155 (201)
T PRK04213         82 RYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNR---DEVLDEIAE  155 (201)
T ss_pred             HHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcH---HHHHHHHHH
Confidence            5543    45788888888653211    0      0011122222   2379999999999986433   234445555


Q ss_pred             HcCC---------cEEEEeCCCCCCHHHHHHHHHHHHH
Q 028251          140 ENGL---------LFLEASARTAQNVEEAFIKTAAKIL  168 (211)
Q Consensus       140 ~~~~---------~~~~~s~~~~~~i~~~~~~i~~~~~  168 (211)
                      ..+.         +++++||++| |+++++++|.+.+.
T Consensus       156 ~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~  192 (201)
T PRK04213        156 RLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLH  192 (201)
T ss_pred             HhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhc
Confidence            5554         5899999999 99999999988764

>TIGR00436 era GTP-binding protein Era

Probab=99.89  E-value=3.2e-22  Score=155.98  Aligned_cols=153  Identities=19%  Similarity=0.138  Sum_probs=103.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchh--------hchHHHhccc
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR--------SITRSYYRGA   79 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~--------~~~~~~~~~~   79 (211)
                      +|+++|.+|||||||+|+|++.........+.++......+...+ ..++.+|||||.....        .....++..+
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a   80 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV   80 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence            689999999999999999999876543332212222222232222 2468899999964321        1234567899


Q ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEeCCCCCCHHH
Q 028251           80 AGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVEE  158 (211)
Q Consensus        80 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~  158 (211)
                      |++++|+|+++..+..  ..++..+..   .+.|+++|+||+|+.+... ..+....+....+. +++++||++|.|+++
T Consensus        81 Dvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~  154 (270)
T TIGR00436        81 DLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNTSF  154 (270)
T ss_pred             CEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCHHH
Confidence            9999999999865543  333333333   3789999999999864222 12333444444444 799999999999999


Q ss_pred             HHHHHHHHH
Q 028251          159 AFIKTAAKI  167 (211)
Q Consensus       159 ~~~~i~~~~  167 (211)
                      +++.|.+.+
T Consensus       155 L~~~l~~~l  163 (270)
T TIGR00436       155 LAAFIEVHL  163 (270)
T ss_pred             HHHHHHHhC
Confidence            999888766

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.89  E-value=2.4e-22  Score=137.88  Aligned_cols=114  Identities=36%  Similarity=0.669  Sum_probs=89.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCCC--CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRFQ--PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      ||+|+|+.|||||||+++|++....  .......+.++.............+.+||++|++.+...+..++..+|++|+|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999998876  22233335555555667777777799999999999988888889999999999


Q ss_pred             EECCCHHHHHHHHHH---HHHHHHhcCCCCeEEEEEecCC
Q 028251           86 YDITRRETFNHLSSW---LEDARQHANPNMSIMLVGNKCD  122 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~---~~~~~~~~~~~~p~ivv~nK~D  122 (211)
                      ||++++.++.++..+   +..+.... .+.|+++|+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~~-~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKRD-KNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHHS-SCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHccC-CCCCEEEEEeccC
Confidence            999999999887555   44444433 4699999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.89  E-value=3.5e-22  Score=145.96  Aligned_cols=155  Identities=21%  Similarity=0.212  Sum_probs=105.6

Q ss_pred             EEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccch----hhc---hHHHhccccEEE
Q 028251           11 IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF----RSI---TRSYYRGAAGAL   83 (211)
Q Consensus        11 vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~----~~~---~~~~~~~~d~~i   83 (211)
                      ++|++|||||||+|+|.+........+..+.+.....+.+++ ...+.+|||||....    ..+   ....+..+|+++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii   79 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL   79 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence            589999999999999998865222222223333333333441 355789999996321    122   234567899999


Q ss_pred             EEEECCCH------HHHHHHHHHHHHHHHhcC-------CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeC
Q 028251           84 LVYDITRR------ETFNHLSSWLEDARQHAN-------PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASA  150 (211)
Q Consensus        84 ~v~d~~~~------~~~~~~~~~~~~~~~~~~-------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~  150 (211)
                      +|+|+.++      .++.....|...+.....       .+.|+++++||+|+..................+..++++|+
T Consensus        80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  159 (176)
T cd01881          80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA  159 (176)
T ss_pred             EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEeh
Confidence            99999987      467777777776654432       37999999999999654433222222333345667999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 028251          151 RTAQNVEEAFIKTAAK  166 (211)
Q Consensus       151 ~~~~~i~~~~~~i~~~  166 (211)
                      +++.|++++++++.+.
T Consensus       160 ~~~~gl~~l~~~l~~~  175 (176)
T cd01881         160 KTEEGLDELIRAIYEL  175 (176)
T ss_pred             hhhcCHHHHHHHHHhh
Confidence            9999999999988754

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.89  E-value=7e-22  Score=141.55  Aligned_cols=146  Identities=23%  Similarity=0.215  Sum_probs=105.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh--------chHHHhc
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS--------ITRSYYR   77 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~--------~~~~~~~   77 (211)
                      ++|+++|++|+|||||++++++..... ...+..+..........+  ...+.+|||||...+..        .....+.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC--CEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            589999999999999999999876432 222232333333334444  34678999999755432        2334667


Q ss_pred             cccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHH
Q 028251           78 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVE  157 (211)
Q Consensus        78 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  157 (211)
                      .+|++++|+|+.++.+......+..      ..+.|+++++||+|+.+....       .......+++++|++++.|++
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~  146 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD  146 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence            8999999999998776655544332      347999999999999754432       233456789999999999999


Q ss_pred             HHHHHHHHHH
Q 028251          158 EAFIKTAAKI  167 (211)
Q Consensus       158 ~~~~~i~~~~  167 (211)
                      +++++|.+.+
T Consensus       147 ~l~~~l~~~~  156 (157)
T cd04164         147 ELKEALLELA  156 (157)
T ss_pred             HHHHHHHHhh
Confidence            9999987654

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PRK15494 era GTPase Era; Provisional

Probab=99.89  E-value=6.9e-22  Score=158.29  Aligned_cols=156  Identities=22%  Similarity=0.287  Sum_probs=106.0

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCC-CCeeeEEEEEEEEECCEEEEEEEEeCCCccc-hhhch-------HH
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVEFGARMVTIDGRPIKLQIWDTAGQES-FRSIT-------RS   74 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~-~~~~~-------~~   74 (211)
                      .+.++|+++|.+|||||||+|+|++..+..... +.++.......+..++  .++.||||||... +..+.       ..
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~  127 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS  127 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence            456799999999999999999999887753222 1112233333345554  4578999999743 22221       23


Q ss_pred             HhccccEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC--CcEEEEeCC
Q 028251           75 YYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG--LLFLEASAR  151 (211)
Q Consensus        75 ~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~s~~  151 (211)
                      .+..+|++++|+|..+.  +.... .|+..+...   +.|.++|+||+|+.+.   ...+..+.+...+  ..++++||+
T Consensus       128 ~l~~aDvil~VvD~~~s--~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAk  199 (339)
T PRK15494        128 SLHSADLVLLIIDSLKS--FDDITHNILDKLRSL---NIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISAL  199 (339)
T ss_pred             HhhhCCEEEEEEECCCC--CCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEecc
Confidence            46799999999998663  33333 344444332   5677889999998642   2345555555443  579999999


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q 028251          152 TAQNVEEAFIKTAAKILQ  169 (211)
Q Consensus       152 ~~~~i~~~~~~i~~~~~~  169 (211)
                      +|.|+++++++|.+.+..
T Consensus       200 tg~gv~eL~~~L~~~l~~  217 (339)
T PRK15494        200 SGKNIDGLLEYITSKAKI  217 (339)
T ss_pred             CccCHHHHHHHHHHhCCC
Confidence            999999999998876543

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.88  E-value=8.3e-22  Score=164.54  Aligned_cols=154  Identities=21%  Similarity=0.196  Sum_probs=106.4

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc--------hhhchHHH
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES--------FRSITRSY   75 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~--------~~~~~~~~   75 (211)
                      ..++|+|+|.+|||||||+|+|++..... ...+.++.+.....+..++.  .+.+|||||.+.        +......+
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~  114 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGLQASVAEQAEVA  114 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence            34789999999999999999999876532 22333333333334445544  478999999762        33345667


Q ss_pred             hccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEeCCCCC
Q 028251           76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQ  154 (211)
Q Consensus        76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~  154 (211)
                      +..+|++|+|+|+++..++.. ..+...+..   .+.|+++|+||+|+....   .+....+  ..++ .++++||++|.
T Consensus       115 ~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~~~~~~~--~~g~~~~~~iSA~~g~  185 (472)
T PRK03003        115 MRTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---ADAAALW--SLGLGEPHPVSALHGR  185 (472)
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---hhhHHHH--hcCCCCeEEEEcCCCC
Confidence            889999999999998755432 233333332   379999999999985421   1222222  2333 35799999999


Q ss_pred             CHHHHHHHHHHHHHH
Q 028251          155 NVEEAFIKTAAKILQ  169 (211)
Q Consensus       155 ~i~~~~~~i~~~~~~  169 (211)
                      |++++|++|.+.+.+
T Consensus       186 gi~eL~~~i~~~l~~  200 (472)
T PRK03003        186 GVGDLLDAVLAALPE  200 (472)
T ss_pred             CcHHHHHHHHhhccc
Confidence            999999999988754

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.88  E-value=1.6e-21  Score=143.94  Aligned_cols=156  Identities=22%  Similarity=0.187  Sum_probs=109.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCe--------------eeEEEEEEEEECCEEEEEEEEeCCCccchhhchH
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI--------------GVEFGARMVTIDGRPIKLQIWDTAGQESFRSITR   73 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~   73 (211)
                      +|+|+|.+|+|||||+++|++...........              +.+.......++.....+.+||+||...+...+.
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~   80 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI   80 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence            58999999999999999999887655432211              1222222222333356789999999998888888


Q ss_pred             HHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC--CHHHHHHHHHH-----------
Q 028251           74 SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--SKEEGEQFAKE-----------  140 (211)
Q Consensus        74 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~-----------  140 (211)
                      .++..+|++++|+|+.++..... ..++..+..   .+.|+++++||+|+..+...  ..+...+....           
T Consensus        81 ~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (189)
T cd00881          81 RGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGT  156 (189)
T ss_pred             HHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhc
Confidence            99999999999999987654332 233333332   48999999999999652221  12223333322           


Q ss_pred             ---cCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 028251          141 ---NGLLFLEASARTAQNVEEAFIKTAAKI  167 (211)
Q Consensus       141 ---~~~~~~~~s~~~~~~i~~~~~~i~~~~  167 (211)
                         ...+++++|++++.|+++++++|.+.+
T Consensus       157 ~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         157 RNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             ccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence               246799999999999999999988775

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.88  E-value=3.4e-21  Score=158.76  Aligned_cols=154  Identities=21%  Similarity=0.176  Sum_probs=114.9

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhc--------hHHH
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI--------TRSY   75 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~--------~~~~   75 (211)
                      ..++|+++|++|+|||||+|+|++.... ....+.++.+.....+.+++..  +.+|||||...+...        ...+
T Consensus       202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~--v~l~DTaG~~~~~~~ie~~gi~~~~~~  279 (442)
T TIGR00450       202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGIL--IKLLDTAGIREHADFVERLGIEKSFKA  279 (442)
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEE--EEEeeCCCcccchhHHHHHHHHHHHHH
Confidence            4689999999999999999999987532 2233444566666666777654  689999998654432        2457


Q ss_pred             hccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCC
Q 028251           76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQN  155 (211)
Q Consensus        76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  155 (211)
                      ++.+|++|+|||++++.++...  |+..+..   .+.|+++|+||+|+...      ....++...+.+++.+|+++ .|
T Consensus       280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-~g  347 (442)
T TIGR00450       280 IKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-LK  347 (442)
T ss_pred             HhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-CC
Confidence            7899999999999988776654  5555432   37899999999999543      12334555677899999998 59


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 028251          156 VEEAFIKTAAKILQNIQ  172 (211)
Q Consensus       156 i~~~~~~i~~~~~~~~~  172 (211)
                      ++++|+.+.+.+.+...
T Consensus       348 I~~~~~~L~~~i~~~~~  364 (442)
T TIGR00450       348 IKALVDLLTQKINAFYS  364 (442)
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            99999999998877653

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.88  E-value=1.5e-21  Score=140.50  Aligned_cols=143  Identities=17%  Similarity=0.166  Sum_probs=100.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcc----chhhchHHHhccccEEE
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE----SFRSITRSYYRGAAGAL   83 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~----~~~~~~~~~~~~~d~~i   83 (211)
                      +|+++|.+++|||||+|+|.+...  ....+.+       +.+...    .+|||||..    ++.......+..+|+++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~--~~~~~~~-------v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il   69 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYT--LARKTQA-------VEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI   69 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCc--cCccceE-------EEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence            799999999999999999886532  1112212       222222    269999962    22222234478999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC--cEEEEeCCCCCCHHHHHH
Q 028251           84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL--LFLEASARTAQNVEEAFI  161 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~~~i~~~~~  161 (211)
                      +|+|+++..++.  ..|+..+    ..+.|+++++||+|+.+   ...+...+++.+.+.  +++++|++++.|++++|+
T Consensus        70 ~v~d~~~~~s~~--~~~~~~~----~~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~  140 (158)
T PRK15467         70 YVHGANDPESRL--PAGLLDI----GVSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVD  140 (158)
T ss_pred             EEEeCCCccccc--CHHHHhc----cCCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence            999999876542  2343332    13679999999999854   234556677777664  899999999999999999


Q ss_pred             HHHHHHHHHHh
Q 028251          162 KTAAKILQNIQ  172 (211)
Q Consensus       162 ~i~~~~~~~~~  172 (211)
                      .+.+.+.+.+.
T Consensus       141 ~l~~~~~~~~~  151 (158)
T PRK15467        141 YLASLTKQEEA  151 (158)
T ss_pred             HHHHhchhhhc
Confidence            99888766554

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.88  E-value=3e-21  Score=164.22  Aligned_cols=156  Identities=23%  Similarity=0.274  Sum_probs=115.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCC-------CCCCCCC------CeeeEEEEEEEEE-----CCEEEEEEEEeCCCccc
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKR-------FQPVHDL------TIGVEFGARMVTI-----DGRPIKLQIWDTAGQES   67 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~-------~~~~~~~------~~~~~~~~~~~~~-----~~~~~~l~l~D~~G~~~   67 (211)
                      .-+|+++|+.++|||||+++|+...       +...+..      ..|.++....+.+     ++..+.+.||||||+..
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            3589999999999999999998652       1122211      2255555444333     45668899999999999


Q ss_pred             hhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC---c
Q 028251           68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL---L  144 (211)
Q Consensus        68 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~  144 (211)
                      +...+..++..+|++|+|+|+++..+.+....|+..+.    .+.|+++++||+|+.+..  ..+...++....+.   .
T Consensus        83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~  156 (595)
T TIGR01393        83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASE  156 (595)
T ss_pred             HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcce
Confidence            99999999999999999999998766666655544332    378999999999986422  12223344444555   3


Q ss_pred             EEEEeCCCCCCHHHHHHHHHHHH
Q 028251          145 FLEASARTAQNVEEAFIKTAAKI  167 (211)
Q Consensus       145 ~~~~s~~~~~~i~~~~~~i~~~~  167 (211)
                      ++++||++|.|++++|+.|.+.+
T Consensus       157 vi~vSAktG~GI~~Lle~I~~~l  179 (595)
T TIGR01393       157 AILASAKTGIGIEEILEAIVKRV  179 (595)
T ss_pred             EEEeeccCCCCHHHHHHHHHHhC
Confidence            89999999999999999888765

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd01894 EngA1 EngA1 subfamily

Probab=99.88  E-value=1.2e-21  Score=140.36  Aligned_cols=146  Identities=19%  Similarity=0.107  Sum_probs=99.3

Q ss_pred             EEEcCCCCCHHHHHHHHHhCCCCC-CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh--------chHHHhcccc
Q 028251           10 IIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS--------ITRSYYRGAA   80 (211)
Q Consensus        10 ~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~--------~~~~~~~~~d   80 (211)
                      +++|.+|+|||||+++|++..... ...+..+.+........++  ..+.+|||||...+..        .....+..+|
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d   78 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD   78 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence            479999999999999999775321 1222223333333334444  5688999999876443        3445678899


Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEeCCCCCCHHHH
Q 028251           81 GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVEEA  159 (211)
Q Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~  159 (211)
                      ++++|+|..++.+.... .+...+..   .+.|+++++||+|+.+....     .......+. .++++|++++.|++++
T Consensus        79 ~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l  149 (157)
T cd01894          79 VILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDL  149 (157)
T ss_pred             EEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence            99999999875443332 22222222   36999999999999653221     222334555 6899999999999999


Q ss_pred             HHHHHHH
Q 028251          160 FIKTAAK  166 (211)
Q Consensus       160 ~~~i~~~  166 (211)
                      +++|.+.
T Consensus       150 ~~~l~~~  156 (157)
T cd01894         150 LDAILEL  156 (157)
T ss_pred             HHHHHhh
Confidence            9998865

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd01889 SelB_euk SelB subfamily

Probab=99.88  E-value=1.7e-21  Score=144.76  Aligned_cols=157  Identities=17%  Similarity=0.147  Sum_probs=100.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhC----CCCCC---CCCCeeeEEEEEEEEEC------------CEEEEEEEEeCCCccc
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDK----RFQPV---HDLTIGVEFGARMVTID------------GRPIKLQIWDTAGQES   67 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~----~~~~~---~~~~~~~~~~~~~~~~~------------~~~~~l~l~D~~G~~~   67 (211)
                      ++|+++|++++|||||+++|+..    .+...   ..+..+.........+.            +....+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            58999999999999999999963    11111   11111222222222222            3367889999999876


Q ss_pred             hhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC--CHHHHHHHHH------
Q 028251           68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--SKEEGEQFAK------  139 (211)
Q Consensus        68 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~------  139 (211)
                      +..........+|++++|+|+.+.........+.  +...  .+.|+++++||+|+......  ..++..+...      
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~  156 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT  156 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            5554445567789999999998754333222221  1122  26799999999998632211  1222222111      


Q ss_pred             -HcCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 028251          140 -ENGLLFLEASARTAQNVEEAFIKTAAKI  167 (211)
Q Consensus       140 -~~~~~~~~~s~~~~~~i~~~~~~i~~~~  167 (211)
                       ..+++++++|++++.|++++++.|.+.+
T Consensus       157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~  185 (192)
T cd01889         157 RFKNSPIIPVSAKPGGGEAELGKDLNNLI  185 (192)
T ss_pred             CcCCCCEEEEeccCCCCHHHHHHHHHhcc
Confidence             1357899999999999999999888766

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PRK11058 GTPase HflX; Provisional

Probab=99.88  E-value=3.9e-21  Score=157.55  Aligned_cols=158  Identities=18%  Similarity=0.134  Sum_probs=112.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccch--hhch------HHHhcc
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF--RSIT------RSYYRG   78 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~--~~~~------~~~~~~   78 (211)
                      ++|+++|.+|||||||+|+|++........+..+.+.....+.+.+. ..+.+|||||..+.  ..++      ...+..
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~  276 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ  276 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence            68999999999999999999987654433333345554445555542 24679999997331  2222      234688


Q ss_pred             ccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCc-EEEEeCCCCCCHH
Q 028251           79 AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVE  157 (211)
Q Consensus        79 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~i~  157 (211)
                      +|++|+|+|++++.++..+..|...+......+.|+++|+||+|+.....   ....  ....+.+ ++.+||++|.|++
T Consensus       277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~~--~~~~~~~~~v~ISAktG~GId  351 (426)
T PRK11058        277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRID--RDEENKPIRVWLSAQTGAGIP  351 (426)
T ss_pred             CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHHH--HHhcCCCceEEEeCCCCCCHH
Confidence            99999999999988877776665555555445799999999999854211   1111  1123445 5889999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028251          158 EAFIKTAAKILQN  170 (211)
Q Consensus       158 ~~~~~i~~~~~~~  170 (211)
                      +++++|.+.+...
T Consensus       352 eL~e~I~~~l~~~  364 (426)
T PRK11058        352 LLFQALTERLSGE  364 (426)
T ss_pred             HHHHHHHHHhhhc
Confidence            9999999888543

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.88  E-value=1.3e-20  Score=153.81  Aligned_cols=159  Identities=18%  Similarity=0.169  Sum_probs=114.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc----hhhchHHH---hccc
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES----FRSITRSY---YRGA   79 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~----~~~~~~~~---~~~~   79 (211)
                      ..|+++|.++||||||+++|++.+......+.++.......+.++. ...+.+||+||...    ...+...+   +..+
T Consensus       159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~  237 (424)
T PRK12297        159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERT  237 (424)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence            4799999999999999999998764333333334443333344431 34688999999642    11233344   4558


Q ss_pred             cEEEEEEECCCH---HHHHHHHHHHHHHHHhcC--CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCC
Q 028251           80 AGALLVYDITRR---ETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQ  154 (211)
Q Consensus        80 d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  154 (211)
                      +++|+|+|+++.   +.+.....|...+..+..  .++|++||+||+|+.+.    .+....+....+.+++++||+++.
T Consensus       238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~~i~~iSA~tge  313 (424)
T PRK12297        238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA----EENLEEFKEKLGPKVFPISALTGQ  313 (424)
T ss_pred             CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCCcEEEEeCCCCC
Confidence            999999999864   567777778777776543  47999999999998431    244555666666789999999999


Q ss_pred             CHHHHHHHHHHHHHHH
Q 028251          155 NVEEAFIKTAAKILQN  170 (211)
Q Consensus       155 ~i~~~~~~i~~~~~~~  170 (211)
                      |+++++++|.+.+.+.
T Consensus       314 GI~eL~~~L~~~l~~~  329 (424)
T PRK12297        314 GLDELLYAVAELLEET  329 (424)
T ss_pred             CHHHHHHHHHHHHHhC
Confidence            9999999998877654

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.87  E-value=9.3e-22  Score=133.91  Aligned_cols=154  Identities=19%  Similarity=0.317  Sum_probs=123.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+.+.++|-.++|||||+|.+..+.+.+...|++|....    .+....+.+.+||.||+.++++.|..|++.+++++||
T Consensus        20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr----k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~   95 (186)
T KOG0075|consen   20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV   95 (186)
T ss_pred             eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE----EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence            578899999999999999999998888888888887764    4555678899999999999999999999999999999


Q ss_pred             EECCCHHHHHHHHHHHHHHH-HhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHc--------CCcEEEEeCCCCCCH
Q 028251           86 YDITRRETFNHLSSWLEDAR-QHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN--------GLLFLEASARTAQNV  156 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~-~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~~s~~~~~~i  156 (211)
                      +|+.+++.+..-+..+..+. +..-.+.|++|++||.|++..  +...   .+..+.        .+.+|.+|+++..++
T Consensus        96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A--L~~~---~li~rmgL~sitdREvcC~siScke~~Ni  170 (186)
T KOG0075|consen   96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA--LSKI---ALIERMGLSSITDREVCCFSISCKEKVNI  170 (186)
T ss_pred             eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc--ccHH---HHHHHhCccccccceEEEEEEEEcCCccH
Confidence            99999887766655444443 333368999999999998653  2222   222222        334899999999999


Q ss_pred             HHHHHHHHHHHH
Q 028251          157 EEAFIKTAAKIL  168 (211)
Q Consensus       157 ~~~~~~i~~~~~  168 (211)
                      +-+.++|++.-.
T Consensus       171 d~~~~Wli~hsk  182 (186)
T KOG0075|consen  171 DITLDWLIEHSK  182 (186)
T ss_pred             HHHHHHHHHHhh
Confidence            999999987653

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.87  E-value=8.3e-21  Score=141.28  Aligned_cols=158  Identities=19%  Similarity=0.173  Sum_probs=105.7

Q ss_pred             CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCc----------cchhhch
Q 028251            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ----------ESFRSIT   72 (211)
Q Consensus         3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~----------~~~~~~~   72 (211)
                      .+..++|+++|++|+|||||+++|++..+.....++.+.+........   ...+.||||||.          +.+....
T Consensus        21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~   97 (196)
T PRK00454         21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLI   97 (196)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHH
Confidence            456789999999999999999999987655554555555544443332   257899999994          2333444


Q ss_pred             HHHhccc---cEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC--CHHHHHHHHHHcCCcEEE
Q 028251           73 RSYYRGA---AGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--SKEEGEQFAKENGLLFLE  147 (211)
Q Consensus        73 ~~~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~  147 (211)
                      ..++...   +++++|+|..++.+.... .+...+..   .+.|+++++||+|+....+.  ..+.+.........++++
T Consensus        98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~  173 (196)
T PRK00454         98 EEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVIL  173 (196)
T ss_pred             HHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEE
Confidence            5555544   578888998775433221 11122221   37899999999998643221  112233344334678999


Q ss_pred             EeCCCCCCHHHHHHHHHHHH
Q 028251          148 ASARTAQNVEEAFIKTAAKI  167 (211)
Q Consensus       148 ~s~~~~~~i~~~~~~i~~~~  167 (211)
                      +|++++.|++++++.|.+.+
T Consensus       174 ~Sa~~~~gi~~l~~~i~~~~  193 (196)
T PRK00454        174 FSSLKKQGIDELRAAIAKWL  193 (196)
T ss_pred             EEcCCCCCHHHHHHHHHHHh
Confidence            99999999999999887765

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.87  E-value=4.6e-21  Score=158.74  Aligned_cols=149  Identities=24%  Similarity=0.225  Sum_probs=110.1

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhc--------hHHH
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI--------TRSY   75 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~--------~~~~   75 (211)
                      ..++|+++|.+|+|||||+|+|++.... ....+..+.++....+.+++.  .+.+|||||...+...        ...+
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~--~i~l~DT~G~~~~~~~ie~~gi~~~~~~  291 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGI--PLRLIDTAGIRETDDEVEKIGIERSREA  291 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCe--EEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence            3479999999999999999999987642 223333355555555666654  5789999998654332        2346


Q ss_pred             hccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCC
Q 028251           76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQN  155 (211)
Q Consensus        76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  155 (211)
                      +..+|++++|+|++++.++.....|..      ..+.|+++|+||+|+.......        ...+.+++++|+++|.|
T Consensus       292 ~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~G  357 (449)
T PRK05291        292 IEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEG  357 (449)
T ss_pred             HHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCC
Confidence            789999999999999877665444432      3478999999999996532211        23456799999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 028251          156 VEEAFIKTAAKILQ  169 (211)
Q Consensus       156 i~~~~~~i~~~~~~  169 (211)
                      +++++++|.+.+..
T Consensus       358 I~~L~~~L~~~l~~  371 (449)
T PRK05291        358 IDELREAIKELAFG  371 (449)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999988754

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.87  E-value=5.4e-21  Score=159.67  Aligned_cols=158  Identities=18%  Similarity=0.181  Sum_probs=109.8

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcc----------chhhch-
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE----------SFRSIT-   72 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~----------~~~~~~-   72 (211)
                      ..++|+++|.+++|||||+|+|++.... ....+.++.+.....+.+++..  +.+|||||..          .+..+. 
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~  287 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLRT  287 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHHH
Confidence            4689999999999999999999988653 2333343444444556666655  5699999952          222222 


Q ss_pred             HHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC--CHHHHHH-HHHHcCCcEEEEe
Q 028251           73 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--SKEEGEQ-FAKENGLLFLEAS  149 (211)
Q Consensus        73 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~-~~~~~~~~~~~~s  149 (211)
                      ..++..+|++|+|+|++++.++..+. ++..+..   .+.|+++|+||+|+.+....  ..++... +.....++++++|
T Consensus       288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~S  363 (472)
T PRK03003        288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNIS  363 (472)
T ss_pred             HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEE
Confidence            34578999999999999987776653 3333332   47899999999999642211  0111211 1212346899999


Q ss_pred             CCCCCCHHHHHHHHHHHHH
Q 028251          150 ARTAQNVEEAFIKTAAKIL  168 (211)
Q Consensus       150 ~~~~~~i~~~~~~i~~~~~  168 (211)
                      |++|.|++++|+.+.+.+.
T Consensus       364 Ak~g~gv~~lf~~i~~~~~  382 (472)
T PRK03003        364 AKTGRAVDKLVPALETALE  382 (472)
T ss_pred             CCCCCCHHHHHHHHHHHHH
Confidence            9999999999999987764

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.87  E-value=2e-20  Score=158.52  Aligned_cols=153  Identities=20%  Similarity=0.195  Sum_probs=110.7

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ..++|+++|+.++|||||+++|.+..+.....+..+.+.....+.+++. ..+.||||||++.|..++...+..+|++|+
T Consensus        86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaIL  164 (587)
T TIGR00487        86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVL  164 (587)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence            5689999999999999999999988776655544445544444555432 268899999999999999889999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC---------CcEEEEeCCCCCC
Q 028251           85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG---------LLFLEASARTAQN  155 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~~~~~s~~~~~~  155 (211)
                      |+|+++....+....    +......+.|+++++||+|+...   ..+.........+         .+++++||++|.|
T Consensus       165 VVda~dgv~~qT~e~----i~~~~~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeG  237 (587)
T TIGR00487       165 VVAADDGVMPQTIEA----ISHAKAANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDG  237 (587)
T ss_pred             EEECCCCCCHhHHHH----HHHHHHcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCC
Confidence            999987432111111    12222247999999999998642   2233333332222         4699999999999


Q ss_pred             HHHHHHHHHH
Q 028251          156 VEEAFIKTAA  165 (211)
Q Consensus       156 i~~~~~~i~~  165 (211)
                      +++++++|..
T Consensus       238 I~eLl~~I~~  247 (587)
T TIGR00487       238 IDELLDMILL  247 (587)
T ss_pred             hHHHHHhhhh
Confidence            9999998863

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=1.3e-20  Score=127.39  Aligned_cols=156  Identities=19%  Similarity=0.330  Sum_probs=122.0

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      +.++|+.+|-.++||||++..|+-... ....+++|..+...    ..+++.+++||.+|++..+.+|..|+....++||
T Consensus        16 KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnvetV----tykN~kfNvwdvGGqd~iRplWrhYy~gtqglIF   90 (180)
T KOG0071|consen   16 KEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVETV----TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   90 (180)
T ss_pred             ccceEEEEecccCCceehhhHHhcCCC-cccccccceeEEEE----EeeeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence            467999999999999999999986653 44556666665443    3357789999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHc-----CCcEEEEeCCCCCCHHH
Q 028251           85 VYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN-----GLLFLEASARTAQNVEE  158 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~s~~~~~~i~~  158 (211)
                      |+|..+.+..+..+..+..+.... ....|++|.+||.|+++.  +..+++..+....     ...+.++++.+++++.+
T Consensus        91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A--~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~e  168 (180)
T KOG0071|consen   91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDA--MKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKE  168 (180)
T ss_pred             EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccc--cCHHHHHHHhccccccCCccEeeccccccchhHHH
Confidence            999999877666655444432222 258999999999999763  4566766655543     33488999999999999


Q ss_pred             HHHHHHHHH
Q 028251          159 AFIKTAAKI  167 (211)
Q Consensus       159 ~~~~i~~~~  167 (211)
                      -|.+|.+.+
T Consensus       169 glswlsnn~  177 (180)
T KOG0071|consen  169 GLSWLSNNL  177 (180)
T ss_pred             HHHHHHhhc
Confidence            999988764

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.87  E-value=6.6e-21  Score=140.01  Aligned_cols=150  Identities=17%  Similarity=0.217  Sum_probs=99.3

Q ss_pred             CCCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcc----------chhh
Q 028251            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE----------SFRS   70 (211)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~----------~~~~   70 (211)
                      |+....++|+|+|++|+|||||+|+|++..+.....++.+.+.....+..++   .+.+|||||..          .+..
T Consensus        13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~   89 (179)
T TIGR03598        13 LPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQK   89 (179)
T ss_pred             CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHH
Confidence            3456789999999999999999999998764333334445554444344442   57899999953          2333


Q ss_pred             chHHHhc---cccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC--CHHHHHHHHHHcC--C
Q 028251           71 ITRSYYR---GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--SKEEGEQFAKENG--L  143 (211)
Q Consensus        71 ~~~~~~~---~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~  143 (211)
                      ....+++   .+|++++|+|++++.+.... .++..+..   .+.|+++++||+|+......  ..++++......+  .
T Consensus        90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~  165 (179)
T TIGR03598        90 LIEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDP  165 (179)
T ss_pred             HHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCC
Confidence            3444554   35799999999875444433 22233322   37899999999998643211  2334444554443  4


Q ss_pred             cEEEEeCCCCCCHH
Q 028251          144 LFLEASARTAQNVE  157 (211)
Q Consensus       144 ~~~~~s~~~~~~i~  157 (211)
                      +++++||++|+|++
T Consensus       166 ~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       166 SVQLFSSLKKTGID  179 (179)
T ss_pred             ceEEEECCCCCCCC
Confidence            79999999999873

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.87  E-value=4.8e-21  Score=143.40  Aligned_cols=159  Identities=20%  Similarity=0.180  Sum_probs=100.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCeeeEEEEEEEEEC-----------------------------C----
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTID-----------------------------G----   52 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~-----------------------------~----   52 (211)
                      ++|+++|+.|+|||||+..+.+..... ......+.++......+.                             +    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            479999999999999999997542111 000111111111111110                             1    


Q ss_pred             EEEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC--C
Q 028251           53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--S  130 (211)
Q Consensus        53 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~  130 (211)
                      ....+.||||||++.+.......+..+|++++|+|+.++.........+..+....  ..|+++++||+|+......  .
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~--~~~iiivvNK~Dl~~~~~~~~~  158 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMG--LKHIIIVQNKIDLVKEEQALEN  158 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcC--CCcEEEEEEchhccCHHHHHHH
Confidence            11578999999999888888888889999999999987421111112222222221  3579999999999642211  1


Q ss_pred             HHHHHHHHHH---cCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 028251          131 KEEGEQFAKE---NGLLFLEASARTAQNVEEAFIKTAAKI  167 (211)
Q Consensus       131 ~~~~~~~~~~---~~~~~~~~s~~~~~~i~~~~~~i~~~~  167 (211)
                      .+....++..   .+++++++||++|.|++++++.|.+.+
T Consensus       159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l  198 (203)
T cd01888         159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI  198 (203)
T ss_pred             HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence            1223333332   256799999999999999999887654

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.87  E-value=1.3e-20  Score=155.58  Aligned_cols=163  Identities=15%  Similarity=0.107  Sum_probs=112.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccch----hhc---hHHHhcc
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF----RSI---TRSYYRG   78 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~----~~~---~~~~~~~   78 (211)
                      ...|+|+|.++||||||+|+|++.+......+.++.......+.+.+  ..+.+||+||....    ..+   ....+..
T Consensus       159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhier  236 (500)
T PRK12296        159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIER  236 (500)
T ss_pred             cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence            46799999999999999999998765443334334444444444544  46889999995321    111   2234577


Q ss_pred             ccEEEEEEECCCH----HHHHHHHHHHHHHHHhc-----------CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC
Q 028251           79 AAGALLVYDITRR----ETFNHLSSWLEDARQHA-----------NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL  143 (211)
Q Consensus        79 ~d~~i~v~d~~~~----~~~~~~~~~~~~~~~~~-----------~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~  143 (211)
                      +|++|+|+|+++.    +.+..+..+..++..+.           ..+.|++||+||+|+.+.... .+.........++
T Consensus       237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el-~e~l~~~l~~~g~  315 (500)
T PRK12296        237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL-AEFVRPELEARGW  315 (500)
T ss_pred             cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH-HHHHHHHHHHcCC
Confidence            8999999999752    34455555555554432           147899999999999653322 2233334445578


Q ss_pred             cEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 028251          144 LFLEASARTAQNVEEAFIKTAAKILQNI  171 (211)
Q Consensus       144 ~~~~~s~~~~~~i~~~~~~i~~~~~~~~  171 (211)
                      +++++||+++.|+++++++|.+.+....
T Consensus       316 ~Vf~ISA~tgeGLdEL~~~L~ell~~~r  343 (500)
T PRK12296        316 PVFEVSAASREGLRELSFALAELVEEAR  343 (500)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence            9999999999999999999988876543

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.86  E-value=1.5e-20  Score=155.74  Aligned_cols=158  Identities=23%  Similarity=0.131  Sum_probs=107.0

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhc-----------h
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI-----------T   72 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~-----------~   72 (211)
                      ..++|+++|.+++|||||+|+|++..... ...+.++.+.....+..++.  .+.+|||||.......           .
T Consensus       171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~~  248 (429)
T TIGR03594       171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLRT  248 (429)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHHH
Confidence            45899999999999999999999876432 22222233333333444543  6789999996543321           2


Q ss_pred             HHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-H----cCCcEEE
Q 028251           73 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-E----NGLLFLE  147 (211)
Q Consensus        73 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~----~~~~~~~  147 (211)
                      ..+++.+|++|+|+|+.++.+..... ++..+..   .+.|+++++||+|+.+. ....++...... .    ..+++++
T Consensus       249 ~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~vi~  323 (429)
T TIGR03594       249 LKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVKD-EKTREEFKKELRRKLPFLDFAPIVF  323 (429)
T ss_pred             HHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCCC-HHHHHHHHHHHHHhcccCCCCceEE
Confidence            34678999999999999876655543 2233322   37899999999999621 111222222222 1    2468999


Q ss_pred             EeCCCCCCHHHHHHHHHHHHHH
Q 028251          148 ASARTAQNVEEAFIKTAAKILQ  169 (211)
Q Consensus       148 ~s~~~~~~i~~~~~~i~~~~~~  169 (211)
                      +||++|.|++++|+++.+.+..
T Consensus       324 ~SA~~g~~v~~l~~~i~~~~~~  345 (429)
T TIGR03594       324 ISALTGQGVDKLLDAIDEVYEN  345 (429)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999887654

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd01895 EngA2 EngA2 subfamily

Probab=99.86  E-value=2e-20  Score=136.03  Aligned_cols=155  Identities=24%  Similarity=0.152  Sum_probs=102.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCC-CCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh-----------chH
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS-----------ITR   73 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~-----------~~~   73 (211)
                      .++|+++|.+|+|||||+++|++...... ..+..+.......+..++.  .+.+||+||......           ...
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHHH
Confidence            57899999999999999999998764322 2222222332333444544  467999999643311           112


Q ss_pred             HHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHH-HHc----CCcEEEE
Q 028251           74 SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFA-KEN----GLLFLEA  148 (211)
Q Consensus        74 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-~~~----~~~~~~~  148 (211)
                      ..+..+|++++|+|+.++.+..... ++..+..   .+.|+++++||+|+.+......+...+.. ...    ..+++++
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDLR-IAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI  155 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence            3567899999999999876654432 2222222   37899999999999654322222222222 222    3679999


Q ss_pred             eCCCCCCHHHHHHHHHHH
Q 028251          149 SARTAQNVEEAFIKTAAK  166 (211)
Q Consensus       149 s~~~~~~i~~~~~~i~~~  166 (211)
                      |++++.|++++++.+.+.
T Consensus       156 Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         156 SALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             eccCCCCHHHHHHHHHHh
Confidence            999999999999988764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd04163 Era Era subfamily

Probab=99.86  E-value=1.9e-20  Score=135.13  Aligned_cols=156  Identities=20%  Similarity=0.126  Sum_probs=103.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh--------chHHHhc
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS--------ITRSYYR   77 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~--------~~~~~~~   77 (211)
                      ..+|+++|++|+|||||+++|.+.................. .........+.+|||||......        .....+.
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   81 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIR-GIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK   81 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEE-EEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence            57899999999999999999998765433222212211111 12233346788999999654322        2344578


Q ss_pred             cccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHc-CCcEEEEeCCCCCCH
Q 028251           78 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN-GLLFLEASARTAQNV  156 (211)
Q Consensus        78 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~i  156 (211)
                      .+|++++|+|+.++.+ .....+...+...   +.|+++++||+|+........+....+.... ..+++++|++++.++
T Consensus        82 ~~d~i~~v~d~~~~~~-~~~~~~~~~~~~~---~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~  157 (168)
T cd04163          82 DVDLVLFVVDASEPIG-EGDEFILELLKKS---KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV  157 (168)
T ss_pred             hCCEEEEEEECCCccC-chHHHHHHHHHHh---CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence            8999999999998722 1112222333322   6899999999999643222223333444444 367999999999999


Q ss_pred             HHHHHHHHHH
Q 028251          157 EEAFIKTAAK  166 (211)
Q Consensus       157 ~~~~~~i~~~  166 (211)
                      +++++.|.+.
T Consensus       158 ~~l~~~l~~~  167 (168)
T cd04163         158 DELLEEIVKY  167 (168)
T ss_pred             HHHHHHHHhh
Confidence            9999998764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.86  E-value=4.7e-21  Score=131.71  Aligned_cols=163  Identities=27%  Similarity=0.494  Sum_probs=140.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||.++|++..|||||+-.+.++.+.+.+..+.|..+-.+++.+.+..+.+.+||.+|++++....+.....+-+++|+
T Consensus        20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFm   99 (205)
T KOG1673|consen   20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFM   99 (205)
T ss_pred             EEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEE
Confidence            58999999999999999999999999999999999999999999999999999999999999999998888888899999


Q ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCC----CCC-CHHHHHHHHHHcCCcEEEEeCCCCCCHHHHH
Q 028251           86 YDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR----RAV-SKEEGEQFAKENGLLFLEASARTAQNVEEAF  160 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~  160 (211)
                      ||++.+.++..+..|+...+......+| |++++|.|+--.    .+. -...++.+++-.+++++++|+....|+.++|
T Consensus       100 FDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KIF  178 (205)
T KOG1673|consen  100 FDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKIF  178 (205)
T ss_pred             EecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHHH
Confidence            9999999999999999998877765555 567999997211    111 1234566777789999999999999999999


Q ss_pred             HHHHHHHHH
Q 028251          161 IKTAAKILQ  169 (211)
Q Consensus       161 ~~i~~~~~~  169 (211)
                      .-+..++..
T Consensus       179 K~vlAklFn  187 (205)
T KOG1673|consen  179 KIVLAKLFN  187 (205)
T ss_pred             HHHHHHHhC
Confidence            887777643

>PRK00089 era GTPase Era; Reviewed

Probab=99.85  E-value=2.9e-20  Score=146.67  Aligned_cols=159  Identities=20%  Similarity=0.151  Sum_probs=105.4

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchh--------hchHHHh
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR--------SITRSYY   76 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~--------~~~~~~~   76 (211)
                      +.-.|+|+|++|||||||+|+|++.........+.+.......+... ...++.+|||||.....        ......+
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~   82 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSL   82 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence            34569999999999999999999887754433332222222222222 23678999999964322        2334467


Q ss_pred             ccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC-CcEEEEeCCCCCC
Q 028251           77 RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG-LLFLEASARTAQN  155 (211)
Q Consensus        77 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~  155 (211)
                      ..+|++++|+|+++..+ ......+..+.   ..+.|+++++||+|+.............+....+ .+++++||+++.|
T Consensus        83 ~~~D~il~vvd~~~~~~-~~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~g  158 (292)
T PRK00089         83 KDVDLVLFVVDADEKIG-PGDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDN  158 (292)
T ss_pred             hcCCEEEEEEeCCCCCC-hhHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCC
Confidence            89999999999988322 11122222222   2378999999999996432222334444444444 5699999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028251          156 VEEAFIKTAAKIL  168 (211)
Q Consensus       156 i~~~~~~i~~~~~  168 (211)
                      ++++++.|.+.+.
T Consensus       159 v~~L~~~L~~~l~  171 (292)
T PRK00089        159 VDELLDVIAKYLP  171 (292)
T ss_pred             HHHHHHHHHHhCC
Confidence            9999999888764

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.85  E-value=6.3e-20  Score=152.32  Aligned_cols=146  Identities=23%  Similarity=0.184  Sum_probs=102.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc--------hhhchHHHhc
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES--------FRSITRSYYR   77 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~--------~~~~~~~~~~   77 (211)
                      ++|+++|.+|||||||+|+|.+.... ....+..+.+.....+.+++  ..+.+|||||.+.        .......++.
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            58999999999999999999987643 22223334444444455555  6689999999876        2333556788


Q ss_pred             cccEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEeCCCCC
Q 028251           78 GAAGALLVYDITRRETFN--HLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQ  154 (211)
Q Consensus        78 ~~d~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~  154 (211)
                      .+|++|+|+|+.++.+..  .+..|+.   .   .+.|+++++||+|+....    +....+ ...++ .++++||++|.
T Consensus        80 ~ad~il~vvd~~~~~~~~~~~~~~~l~---~---~~~piilv~NK~D~~~~~----~~~~~~-~~lg~~~~~~iSa~~g~  148 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADEEIAKILR---K---SNKPVILVVNKVDGPDEE----ADAYEF-YSLGLGEPYPISAEHGR  148 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHHHH---H---cCCcEEEEEECccCccch----hhHHHH-HhcCCCCCEEEEeeCCC
Confidence            999999999998754332  2223322   2   278999999999975411    222222 24455 48999999999


Q ss_pred             CHHHHHHHHHH
Q 028251          155 NVEEAFIKTAA  165 (211)
Q Consensus       155 ~i~~~~~~i~~  165 (211)
                      |++++++.+.+
T Consensus       149 gv~~l~~~I~~  159 (435)
T PRK00093        149 GIGDLLDAILE  159 (435)
T ss_pred             CHHHHHHHHHh
Confidence            99999998887

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.85  E-value=8.6e-20  Score=148.10  Aligned_cols=163  Identities=16%  Similarity=0.092  Sum_probs=113.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchh-------hchHHHhcc
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR-------SITRSYYRG   78 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~-------~~~~~~~~~   78 (211)
                      ...|+|+|.++||||||+|+|++.+......+.++.......+.+++ ...+.++|+||.....       ......+..
T Consensus       159 iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~r  237 (390)
T PRK12298        159 LADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLER  237 (390)
T ss_pred             cccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHh
Confidence            34799999999999999999998765433334334444444444432 2347899999964311       112234788


Q ss_pred             ccEEEEEEECC---CHHHHHHHHHHHHHHHHhcC--CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC--CcEEEEeCC
Q 028251           79 AAGALLVYDIT---RRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG--LLFLEASAR  151 (211)
Q Consensus        79 ~d~~i~v~d~~---~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~s~~  151 (211)
                      +|++++|+|++   +...+.....|+..+..+..  .+.|+++|+||+|+...... .+....+....+  .+++.+||+
T Consensus       238 advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~  316 (390)
T PRK12298        238 CRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAA  316 (390)
T ss_pred             CCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECC
Confidence            99999999988   44566777777777766532  46899999999998653322 233444444433  468999999


Q ss_pred             CCCCHHHHHHHHHHHHHHH
Q 028251          152 TAQNVEEAFIKTAAKILQN  170 (211)
Q Consensus       152 ~~~~i~~~~~~i~~~~~~~  170 (211)
                      ++.+++++++.|.+.+.+.
T Consensus       317 tg~GIdeLl~~I~~~L~~~  335 (390)
T PRK12298        317 SGLGVKELCWDLMTFIEEN  335 (390)
T ss_pred             CCcCHHHHHHHHHHHhhhC
Confidence            9999999999999888654

>COG1159 Era GTPase [General function prediction only]

Probab=99.85  E-value=3.7e-20  Score=141.17  Aligned_cols=161  Identities=20%  Similarity=0.110  Sum_probs=116.0

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc--------hhhchHHH
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES--------FRSITRSY   75 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~--------~~~~~~~~   75 (211)
                      -+.--|+++|.|++|||||+|+|++.+....+..+.++...+..+...+ +.++.|+||||...        ........
T Consensus         4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~-~~QiIfvDTPGih~pk~~l~~~m~~~a~~s   82 (298)
T COG1159           4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD-NAQIIFVDTPGIHKPKHALGELMNKAARSA   82 (298)
T ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC-CceEEEEeCCCCCCcchHHHHHHHHHHHHH
Confidence            3456799999999999999999999999888777767777776665544 66889999999432        22244556


Q ss_pred             hccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC-CcEEEEeCCCCC
Q 028251           76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG-LLFLEASARTAQ  154 (211)
Q Consensus        76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~  154 (211)
                      +..+|+++||+|+.++..- .....++.+..   .+.|+++++||.|...+................ ..++++||++|.
T Consensus        83 l~dvDlilfvvd~~~~~~~-~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~  158 (298)
T COG1159          83 LKDVDLILFVVDADEGWGP-GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGD  158 (298)
T ss_pred             hccCcEEEEEEeccccCCc-cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccC
Confidence            7899999999999884321 11222333333   378999999999987655422333333333333 369999999999


Q ss_pred             CHHHHHHHHHHHHHH
Q 028251          155 NVEEAFIKTAAKILQ  169 (211)
Q Consensus       155 ~i~~~~~~i~~~~~~  169 (211)
                      |++.+.+.+...+.+
T Consensus       159 n~~~L~~~i~~~Lpe  173 (298)
T COG1159         159 NVDTLLEIIKEYLPE  173 (298)
T ss_pred             CHHHHHHHHHHhCCC
Confidence            999998888776643

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.85  E-value=6e-20  Score=156.19  Aligned_cols=155  Identities=20%  Similarity=0.209  Sum_probs=113.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCC---CCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKR---FQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      +.|+++|+.++|||||+++|++..   +.++.....+.+.....+..++  ..+.+||+||++.+.......+..+|++|
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            479999999999999999999643   3333444445555544455555  67899999999999988888899999999


Q ss_pred             EEEECCC---HHHHHHHHHHHHHHHHhcCCCCe-EEEEEecCCCCCCCCC--CHHHHHHHHHHc----CCcEEEEeCCCC
Q 028251           84 LVYDITR---RETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAV--SKEEGEQFAKEN----GLLFLEASARTA  153 (211)
Q Consensus        84 ~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~----~~~~~~~s~~~~  153 (211)
                      +|+|+++   +.+.+.+.    .+..   .+.| ++|++||+|+.+....  ..++...+....    +++++++|+++|
T Consensus        79 LVVDa~~G~~~qT~ehl~----il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG  151 (581)
T TIGR00475        79 LVVDADEGVMTQTGEHLA----VLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG  151 (581)
T ss_pred             EEEECCCCCcHHHHHHHH----HHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence            9999988   44443332    2222   2667 9999999999653321  123444554443    578999999999


Q ss_pred             CCHHHHHHHHHHHHHHH
Q 028251          154 QNVEEAFIKTAAKILQN  170 (211)
Q Consensus       154 ~~i~~~~~~i~~~~~~~  170 (211)
                      .|++++++.|.+.+...
T Consensus       152 ~GI~eL~~~L~~l~~~~  168 (581)
T TIGR00475       152 QGIGELKKELKNLLESL  168 (581)
T ss_pred             CCchhHHHHHHHHHHhC
Confidence            99999999887766443

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.85  E-value=3e-20  Score=154.00  Aligned_cols=151  Identities=22%  Similarity=0.184  Sum_probs=104.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCCCCC-CCCCeeeEEEEEEEEECCEEEEEEEEeCCCc--------cchhhchHHHhcc
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ--------ESFRSITRSYYRG   78 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~--------~~~~~~~~~~~~~   78 (211)
                      +|+++|.+|||||||+|+|++...... ..+..+.+.....+..++.  .+.+|||||.        +.+......+++.
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~   78 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGR--EFILIDTGGIEEDDDGLDKQIREQAEIAIEE   78 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCe--EEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence            589999999999999999998764322 2222233333334445544  5889999996        3344556677899


Q ss_pred             ccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEeCCCCCCHH
Q 028251           79 AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVE  157 (211)
Q Consensus        79 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~  157 (211)
                      +|++++|+|..++.+.... .+...+.+   .+.|+++|+||+|+......    ... ....++ +++++||.+|.|+.
T Consensus        79 ad~vl~vvD~~~~~~~~d~-~i~~~l~~---~~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa~~g~gv~  149 (429)
T TIGR03594        79 ADVILFVVDGREGLTPEDE-EIAKWLRK---SGKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISAEHGRGIG  149 (429)
T ss_pred             CCEEEEEEeCCCCCCHHHH-HHHHHHHH---hCCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeCCcCCChH
Confidence            9999999999875433221 22222222   27899999999998653321    112 234565 69999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028251          158 EAFIKTAAKILQ  169 (211)
Q Consensus       158 ~~~~~i~~~~~~  169 (211)
                      ++++.+.+.+..
T Consensus       150 ~ll~~i~~~l~~  161 (429)
T TIGR03594       150 DLLDAILELLPE  161 (429)
T ss_pred             HHHHHHHHhcCc
Confidence            999998877643

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.85  E-value=6.4e-20  Score=156.30  Aligned_cols=162  Identities=23%  Similarity=0.267  Sum_probs=115.8

Q ss_pred             CCCCceeeEEEEcCCCCCHHHHHHHHHhCCCC--C-----CC------CCCeeeEEEEEEEEE-----CCEEEEEEEEeC
Q 028251            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQ--P-----VH------DLTIGVEFGARMVTI-----DGRPIKLQIWDT   62 (211)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~--~-----~~------~~~~~~~~~~~~~~~-----~~~~~~l~l~D~   62 (211)
                      |+.++.-+|+++|+.++|||||+.+|+.....  .     ..      ....|.++....+.+     ++..+.+.||||
T Consensus         2 ~~~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDT   81 (600)
T PRK05433          2 MDMKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDT   81 (600)
T ss_pred             CccccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEEC
Confidence            45566779999999999999999999863211  0     00      112244444333333     555788999999


Q ss_pred             CCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC
Q 028251           63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG  142 (211)
Q Consensus        63 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~  142 (211)
                      ||+..+...+..++..+|++|+|+|+++.........|....    ..+.|+++|+||+|+.+..  ..+....+....+
T Consensus        82 PGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~----~~~lpiIvViNKiDl~~a~--~~~v~~ei~~~lg  155 (600)
T PRK05433         82 PGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENDLEIIPVLNKIDLPAAD--PERVKQEIEDVIG  155 (600)
T ss_pred             CCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----HCCCCEEEEEECCCCCccc--HHHHHHHHHHHhC
Confidence            999999999999999999999999999865555444443322    1378999999999985422  1122233434445


Q ss_pred             Cc---EEEEeCCCCCCHHHHHHHHHHHHH
Q 028251          143 LL---FLEASARTAQNVEEAFIKTAAKIL  168 (211)
Q Consensus       143 ~~---~~~~s~~~~~~i~~~~~~i~~~~~  168 (211)
                      +.   ++++||++|.|++++++.|.+.+.
T Consensus       156 ~~~~~vi~iSAktG~GI~~Ll~~I~~~lp  184 (600)
T PRK05433        156 IDASDAVLVSAKTGIGIEEVLEAIVERIP  184 (600)
T ss_pred             CCcceEEEEecCCCCCHHHHHHHHHHhCc
Confidence            43   899999999999999999887764

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.84  E-value=7.8e-20  Score=157.30  Aligned_cols=156  Identities=19%  Similarity=0.174  Sum_probs=110.3

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEE--EEEEECCEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGA--RMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      ....|+|+|+.++|||||+++|....+.....+..+.+...  ..+..++....+.||||||++.|..++...+..+|++
T Consensus       243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDia  322 (742)
T CHL00189        243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIA  322 (742)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEE
Confidence            56799999999999999999999877655433333322222  2233344567899999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHH-------HHHcC--CcEEEEeCCCC
Q 028251           83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF-------AKENG--LLFLEASARTA  153 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-------~~~~~--~~~~~~s~~~~  153 (211)
                      |+|+|+++....+....| ..+   ...+.|++|++||+|+....   .+.....       ....+  ++++++||++|
T Consensus       323 ILVVDA~dGv~~QT~E~I-~~~---k~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG  395 (742)
T CHL00189        323 ILIIAADDGVKPQTIEAI-NYI---QAANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPISASQG  395 (742)
T ss_pred             EEEEECcCCCChhhHHHH-HHH---HhcCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEEECCCC
Confidence            999999874322222111 122   22479999999999996522   2222221       12223  67999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 028251          154 QNVEEAFIKTAAKI  167 (211)
Q Consensus       154 ~~i~~~~~~i~~~~  167 (211)
                      .|++++++.|....
T Consensus       396 ~GIdeLle~I~~l~  409 (742)
T CHL00189        396 TNIDKLLETILLLA  409 (742)
T ss_pred             CCHHHHHHhhhhhh
Confidence            99999999887653

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.84  E-value=8.3e-20  Score=159.15  Aligned_cols=155  Identities=21%  Similarity=0.162  Sum_probs=102.7

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc--------hhhchHHHh
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES--------FRSITRSYY   76 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~--------~~~~~~~~~   76 (211)
                      ...+|+++|.++||||||+|+|++........ ..|.+..............+.+|||||.+.        +......++
T Consensus       274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~-~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~  352 (712)
T PRK09518        274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVED-TPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAV  352 (712)
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCceeecC-CCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence            34789999999999999999999876432221 223333333222222234578999999653        233445678


Q ss_pred             ccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEeCCCCCC
Q 028251           77 RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQN  155 (211)
Q Consensus        77 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~  155 (211)
                      ..+|++|+|+|+.+...... ..|...+..   .+.|+++|+||+|+....    .....+. ..+. ..+++||++|.|
T Consensus       353 ~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~~~~----~~~~~~~-~lg~~~~~~iSA~~g~G  423 (712)
T PRK09518        353 SLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQASE----YDAAEFW-KLGLGEPYPISAMHGRG  423 (712)
T ss_pred             HhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccccch----hhHHHHH-HcCCCCeEEEECCCCCC
Confidence            89999999999987422111 133344433   489999999999985421    1122221 2232 467999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 028251          156 VEEAFIKTAAKILQ  169 (211)
Q Consensus       156 i~~~~~~i~~~~~~  169 (211)
                      +++++++|.+.+..
T Consensus       424 I~eLl~~i~~~l~~  437 (712)
T PRK09518        424 VGDLLDEALDSLKV  437 (712)
T ss_pred             chHHHHHHHHhccc
Confidence            99999999988754

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.84  E-value=1.7e-19  Score=156.40  Aligned_cols=152  Identities=20%  Similarity=0.227  Sum_probs=109.0

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ..+.|+|+|+.++|||||+++|....+.....+..+.+.....+.+++  ..+.||||||++.|..++...+..+|++|+
T Consensus       289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaIL  366 (787)
T PRK05306        289 RPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVVL  366 (787)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence            568899999999999999999998776654444333344333444444  568899999999999999889999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHH-------HHHHcC--CcEEEEeCCCCCC
Q 028251           85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQ-------FAKENG--LLFLEASARTAQN  155 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------~~~~~~--~~~~~~s~~~~~~  155 (211)
                      |||+++...-+....    +......+.|++|++||+|+.+..   .+....       ++..++  ++++++||++|.|
T Consensus       367 VVdAddGv~~qT~e~----i~~a~~~~vPiIVviNKiDl~~a~---~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~G  439 (787)
T PRK05306        367 VVAADDGVMPQTIEA----INHAKAAGVPIIVAINKIDKPGAN---PDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEG  439 (787)
T ss_pred             EEECCCCCCHhHHHH----HHHHHhcCCcEEEEEECccccccC---HHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCC
Confidence            999988422111111    222222479999999999996421   122211       122222  6799999999999


Q ss_pred             HHHHHHHHHH
Q 028251          156 VEEAFIKTAA  165 (211)
Q Consensus       156 i~~~~~~i~~  165 (211)
                      +++++++|..
T Consensus       440 I~eLle~I~~  449 (787)
T PRK05306        440 IDELLEAILL  449 (787)
T ss_pred             chHHHHhhhh
Confidence            9999999875

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.84  E-value=8.5e-23  Score=144.31  Aligned_cols=172  Identities=36%  Similarity=0.643  Sum_probs=146.5

Q ss_pred             CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEE-EEEEEEeCCCccchhhchHHHhcccc
Q 028251            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRP-IKLQIWDTAGQESFRSITRSYYRGAA   80 (211)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~l~D~~G~~~~~~~~~~~~~~~d   80 (211)
                      ..+..++++|+|..|+|||+++.+++...++..+..++++++..+....+... ++++|||++|++++..+...+++.++
T Consensus        21 kr~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~  100 (229)
T KOG4423|consen   21 KREHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAH  100 (229)
T ss_pred             hhhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCc
Confidence            34677899999999999999999999999999999999999888877776544 58899999999999999999999999


Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcC----CCCeEEEEEecCCCCCCCCC-CHHHHHHHHHHcCCc-EEEEeCCCCC
Q 028251           81 GALLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKCDLAHRRAV-SKEEGEQFAKENGLL-FLEASARTAQ  154 (211)
Q Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~-~~~~s~~~~~  154 (211)
                      +.++|||++..-+|+....|.+.+.....    .-.|+++..||||+...... ......++++++++. .+++|++.+.
T Consensus       101 ~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenk  180 (229)
T KOG4423|consen  101 GAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENK  180 (229)
T ss_pred             ceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeecccccc
Confidence            99999999999999999999988755432    34677888999998653322 246778888889875 9999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhh
Q 028251          155 NVEEAFIKTAAKILQNIQE  173 (211)
Q Consensus       155 ~i~~~~~~i~~~~~~~~~~  173 (211)
                      ++.|+-+.++++++..-.+
T Consensus       181 ni~Ea~r~lVe~~lvnd~q  199 (229)
T KOG4423|consen  181 NIPEAQRELVEKILVNDEQ  199 (229)
T ss_pred             ChhHHHHHHHHHHHhhccC
Confidence            9999999999988766543

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.84  E-value=1.5e-19  Score=153.92  Aligned_cols=146  Identities=20%  Similarity=0.209  Sum_probs=107.5

Q ss_pred             cCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhc------hHHHh--ccccEEEE
Q 028251           13 GDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI------TRSYY--RGAAGALL   84 (211)
Q Consensus        13 G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~------~~~~~--~~~d~~i~   84 (211)
                      |.+|+|||||+|+|.+........+..+.+.....+.+++.  .+.+|||||...+...      ...++  ..+|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            89999999999999988765444555556555555666654  4789999998776543      33333  47899999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Q 028251           85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA  164 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~  164 (211)
                      |+|+++.+..   ..+...+.   +.+.|+++++||+|+.+..... .+.+.+.+..+++++++||++|.|++++++.+.
T Consensus        79 VvDat~ler~---l~l~~ql~---~~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~  151 (591)
T TIGR00437        79 VVDASNLERN---LYLTLQLL---ELGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR  151 (591)
T ss_pred             EecCCcchhh---HHHHHHHH---hcCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence            9999874321   12222222   2479999999999986544443 346677778899999999999999999999998


Q ss_pred             HHH
Q 028251          165 AKI  167 (211)
Q Consensus       165 ~~~  167 (211)
                      +..
T Consensus       152 ~~~  154 (591)
T TIGR00437       152 KAI  154 (591)
T ss_pred             HHh
Confidence            753

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=1.6e-20  Score=131.41  Aligned_cols=161  Identities=25%  Similarity=0.340  Sum_probs=121.4

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCC-----C--CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHh
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRF-----Q--PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYY   76 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~   76 (211)
                      -..+.|+|+|..++|||||+.++.....     .  ....+++|...  .++.+.  +..+.+||.+|++..+++|..||
T Consensus        15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLni--g~i~v~--~~~l~fwdlgGQe~lrSlw~~yY   90 (197)
T KOG0076|consen   15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNI--GTIEVC--NAPLSFWDLGGQESLRSLWKKYY   90 (197)
T ss_pred             hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceee--cceeec--cceeEEEEcCChHHHHHHHHHHH
Confidence            3457899999999999999998753211     1  12223334333  334444  55688999999999999999999


Q ss_pred             ccccEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHH------HcCCcEEEEe
Q 028251           77 RGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK------ENGLLFLEAS  149 (211)
Q Consensus        77 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~s  149 (211)
                      ..+|++|++||+.+++.++.....++.+.... ..+.|+++.+||.|+.+.  +...+++....      +...++.++|
T Consensus        91 ~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~--~~~~El~~~~~~~e~~~~rd~~~~pvS  168 (197)
T KOG0076|consen   91 WLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNA--MEAAELDGVFGLAELIPRRDNPFQPVS  168 (197)
T ss_pred             HHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhh--hhHHHHHHHhhhhhhcCCccCccccch
Confidence            99999999999999998888776666554433 369999999999999663  33344443333      2345699999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHH
Q 028251          150 ARTAQNVEEAFIKTAAKILQN  170 (211)
Q Consensus       150 ~~~~~~i~~~~~~i~~~~~~~  170 (211)
                      |.+|.||++..+|+...+.++
T Consensus       169 al~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  169 ALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             hhhcccHHHHHHHHHHHHhhc
Confidence            999999999999999888665

>cd00880 Era_like Era (E

Probab=99.84  E-value=1.3e-19  Score=129.50  Aligned_cols=151  Identities=21%  Similarity=0.135  Sum_probs=102.2

Q ss_pred             EEcCCCCCHHHHHHHHHhCCCC-CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh-------chHHHhccccEE
Q 028251           11 IIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS-------ITRSYYRGAAGA   82 (211)
Q Consensus        11 vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~-------~~~~~~~~~d~~   82 (211)
                      ++|++|+|||||+++|.+.... .......+............ ...+.+||+||......       ....++..+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            5899999999999999977554 23333323333333333321 45689999999765443       344578899999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHH---HHHHHHHHcCCcEEEEeCCCCCCHHHH
Q 028251           83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE---EGEQFAKENGLLFLEASARTAQNVEEA  159 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~---~~~~~~~~~~~~~~~~s~~~~~~i~~~  159 (211)
                      ++|+|+.+........ +.....   ..+.|+++++||+|+.........   .........+.+++++|++++.|+.++
T Consensus        80 l~v~~~~~~~~~~~~~-~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l  155 (163)
T cd00880          80 LFVVDADLRADEEEEK-LLELLR---ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL  155 (163)
T ss_pred             EEEEeCCCCCCHHHHH-HHHHHH---hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence            9999999876654443 222222   248999999999998654322211   112222335678999999999999999


Q ss_pred             HHHHHHH
Q 028251          160 FIKTAAK  166 (211)
Q Consensus       160 ~~~i~~~  166 (211)
                      ++++.+.
T Consensus       156 ~~~l~~~  162 (163)
T cd00880         156 REALIEA  162 (163)
T ss_pred             HHHHHhh
Confidence            9988764

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=2.3e-20  Score=132.46  Aligned_cols=163  Identities=29%  Similarity=0.550  Sum_probs=141.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .++++++|..|.|||+++++++.+.|...+.+++|.........-+-..+++..|||+|++.+..+...++-+....|++
T Consensus        10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiim   89 (216)
T KOG0096|consen   10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIM   89 (216)
T ss_pred             eEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEE
Confidence            68999999999999999999999999999999999999888665555568999999999999999999999899999999


Q ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHH
Q 028251           86 YDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA  165 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~  165 (211)
                      ||+..+.++.++..|...+.+.+. ++|+++++||.|..+..  .......+.+..++.+++.|++.+.|+..-|.++.+
T Consensus        90 FdVtsr~t~~n~~rwhrd~~rv~~-NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~Lar  166 (216)
T KOG0096|consen   90 FDVTSRFTYKNVPRWHRDLVRVRE-NIPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLAR  166 (216)
T ss_pred             eeeeehhhhhcchHHHHHHHHHhc-CCCeeeeccceeccccc--cccccceeeecccceeEEeecccccccccchHHHhh
Confidence            999999999999999999887775 79999999999986533  123334455567888999999999999999999998


Q ss_pred             HHHHHH
Q 028251          166 KILQNI  171 (211)
Q Consensus       166 ~~~~~~  171 (211)
                      .+.-..
T Consensus       167 Kl~G~p  172 (216)
T KOG0096|consen  167 KLTGDP  172 (216)
T ss_pred             hhcCCC
Confidence            875443

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.83  E-value=2.4e-20  Score=138.07  Aligned_cols=159  Identities=23%  Similarity=0.231  Sum_probs=106.4

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCC----------------CCCeeeEEEEEEEEEC--CEEEEEEEEeCCCcc
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH----------------DLTIGVEFGARMVTID--GRPIKLQIWDTAGQE   66 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~--~~~~~l~l~D~~G~~   66 (211)
                      ...+|+++|+.++|||||+++|+........                ....+.+.......+.  .....+.++|+||+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            4579999999999999999999854422110                0001222222223333  455678999999999


Q ss_pred             chhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCC-CCHHHHH-HHHHHc---
Q 028251           67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA-VSKEEGE-QFAKEN---  141 (211)
Q Consensus        67 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~-~~~~~~---  141 (211)
                      .+.......+..+|++|+|+|+.+..... ....+..+...   +.|++|++||+|+...+. ...++.. .+.+..   
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~~---~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~  157 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILREL---GIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGEN  157 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHHT---T-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTST
T ss_pred             ceeecccceecccccceeeeecccccccc-ccccccccccc---ccceEEeeeeccchhhhHHHHHHHHHHHhccccccC
Confidence            99988888899999999999998764322 22333333333   789999999999962110 0011122 232222   


Q ss_pred             ---CCcEEEEeCCCCCCHHHHHHHHHHHH
Q 028251          142 ---GLLFLEASARTAQNVEEAFIKTAAKI  167 (211)
Q Consensus       142 ---~~~~~~~s~~~~~~i~~~~~~i~~~~  167 (211)
                         .++++++|+.+|.|++++++.|.+.+
T Consensus       158 ~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~  186 (188)
T PF00009_consen  158 GEEIVPVIPISALTGDGIDELLEALVELL  186 (188)
T ss_dssp             TTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred             ccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence               25799999999999999999888765

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.83  E-value=2.5e-19  Score=148.78  Aligned_cols=157  Identities=24%  Similarity=0.154  Sum_probs=104.4

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh-----------ch
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS-----------IT   72 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~-----------~~   72 (211)
                      ..++|+++|.+|+|||||+|+|++..... ...+..+.+.....+..++  ..+.+|||||......           ..
T Consensus       172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~~  249 (435)
T PRK00093        172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIRT  249 (435)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence            46899999999999999999999765322 2222223333223333444  4577999999643211           12


Q ss_pred             HHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHH-HHHH----cCCcEEE
Q 028251           73 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQ-FAKE----NGLLFLE  147 (211)
Q Consensus        73 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-~~~~----~~~~~~~  147 (211)
                      ..++..+|++|+|+|+.++.+..... ++..+..   .+.|+++++||+|+.+...  .++... ....    ..+++++
T Consensus       250 ~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~---~~~~~ivv~NK~Dl~~~~~--~~~~~~~~~~~l~~~~~~~i~~  323 (435)
T PRK00093        250 LKAIERADVVLLVIDATEGITEQDLR-IAGLALE---AGRALVIVVNKWDLVDEKT--MEEFKKELRRRLPFLDYAPIVF  323 (435)
T ss_pred             HHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCcEEEEEECccCCCHHH--HHHHHHHHHHhcccccCCCEEE
Confidence            34678899999999999876655442 2233322   3789999999999863221  122221 1111    3568999


Q ss_pred             EeCCCCCCHHHHHHHHHHHHHH
Q 028251          148 ASARTAQNVEEAFIKTAAKILQ  169 (211)
Q Consensus       148 ~s~~~~~~i~~~~~~i~~~~~~  169 (211)
                      +||+++.|++++++.+.+.+..
T Consensus       324 ~SA~~~~gv~~l~~~i~~~~~~  345 (435)
T PRK00093        324 ISALTGQGVDKLLEAIDEAYEN  345 (435)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999998876543

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.83  E-value=6.7e-19  Score=153.33  Aligned_cols=153  Identities=16%  Similarity=0.152  Sum_probs=113.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhc----------hHHH
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI----------TRSY   75 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~----------~~~~   75 (211)
                      .++|+++|++|||||||+|+|.+......  ...|.+...+...++.....+.+||+||...+...          ...+
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vg--n~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~   80 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQRVG--NWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCccC--CCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence            57899999999999999999998765332  22456666655556666677899999997665421          2223


Q ss_pred             h--ccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCC
Q 028251           76 Y--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTA  153 (211)
Q Consensus        76 ~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  153 (211)
                      +  ..+|++|+|+|+++.+...   .+...+.+   .+.|+++++||+|+.+.+.. ....+++.+..+++++++|++++
T Consensus        81 l~~~~aD~vI~VvDat~ler~l---~l~~ql~e---~giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~g  153 (772)
T PRK09554         81 ILSGDADLLINVVDASNLERNL---YLTLQLLE---LGIPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTRG  153 (772)
T ss_pred             HhccCCCEEEEEecCCcchhhH---HHHHHHHH---cCCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEEeecC
Confidence            2  4789999999998864322   23334433   37999999999998654443 34567777888999999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 028251          154 QNVEEAFIKTAAKI  167 (211)
Q Consensus       154 ~~i~~~~~~i~~~~  167 (211)
                      .|++++.+.+.+..
T Consensus       154 ~GIdeL~~~I~~~~  167 (772)
T PRK09554        154 RGIEALKLAIDRHQ  167 (772)
T ss_pred             CCHHHHHHHHHHhh
Confidence            99999998887654

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.82  E-value=1.6e-18  Score=146.94  Aligned_cols=159  Identities=20%  Similarity=0.187  Sum_probs=104.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEEC----------------CEEEEEEEEeCCCccchh
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID----------------GRPIKLQIWDTAGQESFR   69 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~l~l~D~~G~~~~~   69 (211)
                      ..-|+++|++++|||||+++|.+..+........+.+.....+..+                .....+.||||||++.+.
T Consensus         4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~   83 (590)
T TIGR00491         4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT   83 (590)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence            4579999999999999999999887654332221111111111111                011237899999999999


Q ss_pred             hchHHHhccccEEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCC----CC--------HHHH
Q 028251           70 SITRSYYRGAAGALLVYDITR---RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA----VS--------KEEG  134 (211)
Q Consensus        70 ~~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----~~--------~~~~  134 (211)
                      .++..+++.+|++++|+|+++   +.++..+..    +..   .+.|+++++||+|+.+...    ..        .+..
T Consensus        84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~----l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v  156 (590)
T TIGR00491        84 NLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQV  156 (590)
T ss_pred             HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHH----HHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHH
Confidence            999999999999999999987   444443321    221   3789999999999953110    00        0000


Q ss_pred             ------------HHHHH------------H--cCCcEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 028251          135 ------------EQFAK------------E--NGLLFLEASARTAQNVEEAFIKTAAKILQNI  171 (211)
Q Consensus       135 ------------~~~~~------------~--~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~  171 (211)
                                  .++..            .  ..++++++||++|+|+++++++|.......+
T Consensus       157 ~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~~l  219 (590)
T TIGR00491       157 QQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQYL  219 (590)
T ss_pred             HHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHHHh
Confidence                        01110            0  1357999999999999999998876554433

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.81  E-value=9.4e-19  Score=130.91  Aligned_cols=117  Identities=16%  Similarity=0.341  Sum_probs=88.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccc-cEEEEEE
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGA-AGALLVY   86 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~-d~~i~v~   86 (211)
                      +|+++|++|||||+|+++|....+...+.++ ............+....+.+||+||+..+...+..+++.+ +++|+|+
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv   80 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV   80 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence            6899999999999999999988776654433 2222222222223456789999999999998888899998 9999999


Q ss_pred             ECCCH-HHHHHHHHHHHHHHHh---cCCCCeEEEEEecCCCCC
Q 028251           87 DITRR-ETFNHLSSWLEDARQH---ANPNMSIMLVGNKCDLAH  125 (211)
Q Consensus        87 d~~~~-~~~~~~~~~~~~~~~~---~~~~~p~ivv~nK~Dl~~  125 (211)
                      |+.+. .++.....|+..+...   ...+.|++|++||.|+..
T Consensus        81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~  123 (203)
T cd04105          81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT  123 (203)
T ss_pred             ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence            99997 6677766666554322   225899999999999854

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.81  E-value=4.1e-18  Score=120.96  Aligned_cols=157  Identities=22%  Similarity=0.302  Sum_probs=117.5

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCC--------CCC--CeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchH
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV--------HDL--TIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITR   73 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~--------~~~--~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~   73 (211)
                      .+..||+|.|+.++||||+++++........        ...  +.++......+.+++ ...+.+++||||+++...|.
T Consensus         8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~-~~~v~LfgtPGq~RF~fm~~   86 (187)
T COG2229           8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDE-DTGVHLFGTPGQERFKFMWE   86 (187)
T ss_pred             ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcC-cceEEEecCCCcHHHHHHHH
Confidence            4678999999999999999999987664111        111  122222222333333 24578999999999999999


Q ss_pred             HHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHc--CCcEEEEeCC
Q 028251           74 SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN--GLLFLEASAR  151 (211)
Q Consensus        74 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~s~~  151 (211)
                      .+.+.+.++|+++|.+.+..+ .....++.+....  ..|++|++||.|+.+  ..+.+.+++.....  .+++++.++.
T Consensus        87 ~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~--~ip~vVa~NK~DL~~--a~ppe~i~e~l~~~~~~~~vi~~~a~  161 (187)
T COG2229          87 ILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN--PIPVVVAINKQDLFD--ALPPEKIREALKLELLSVPVIEIDAT  161 (187)
T ss_pred             HHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc--CCCEEEEeeccccCC--CCCHHHHHHHHHhccCCCceeeeecc
Confidence            999999999999999998887 4444444444432  299999999999976  34567776666655  7899999999


Q ss_pred             CCCCHHHHHHHHHHH
Q 028251          152 TAQNVEEAFIKTAAK  166 (211)
Q Consensus       152 ~~~~i~~~~~~i~~~  166 (211)
                      ++++..+.++.+...
T Consensus       162 e~~~~~~~L~~ll~~  176 (187)
T COG2229         162 EGEGARDQLDVLLLK  176 (187)
T ss_pred             cchhHHHHHHHHHhh
Confidence            999999988877655

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.81  E-value=4.6e-19  Score=142.28  Aligned_cols=149  Identities=21%  Similarity=0.139  Sum_probs=103.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCC-eeeEEEEEEEEECCEEEEEEEEeCCCccchh---------hchHHHh
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT-IGVEFGARMVTIDGRPIKLQIWDTAGQESFR---------SITRSYY   76 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~---------~~~~~~~   76 (211)
                      ..|+++|.|+||||||+|||++.+.......+ ++.+.......+.+.  .+.+.||+|.+...         ......+
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~--~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai   81 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGR--EFILIDTGGLDDGDEDELQELIREQALIAI   81 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCc--eEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence            67999999999999999999998876543332 233332333444443  47899999965322         2466778


Q ss_pred             ccccEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEeCCCC
Q 028251           77 RGAAGALLVYDITRRETF--NHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTA  153 (211)
Q Consensus        77 ~~~d~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~  153 (211)
                      ..+|++|||+|.....+-  ..+..|    .+.  .++|+++|+||+|...     .++.....-..|+ .++.+||..|
T Consensus        82 ~eADvilfvVD~~~Git~~D~~ia~~----Lr~--~~kpviLvvNK~D~~~-----~e~~~~efyslG~g~~~~ISA~Hg  150 (444)
T COG1160          82 EEADVILFVVDGREGITPADEEIAKI----LRR--SKKPVILVVNKIDNLK-----AEELAYEFYSLGFGEPVPISAEHG  150 (444)
T ss_pred             HhCCEEEEEEeCCCCCCHHHHHHHHH----HHh--cCCCEEEEEEcccCch-----hhhhHHHHHhcCCCCceEeehhhc
Confidence            999999999999774332  222232    222  2799999999999742     2222222333444 6999999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 028251          154 QNVEEAFIKTAAKIL  168 (211)
Q Consensus       154 ~~i~~~~~~i~~~~~  168 (211)
                      .|+.++++.+++.+.
T Consensus       151 ~Gi~dLld~v~~~l~  165 (444)
T COG1160         151 RGIGDLLDAVLELLP  165 (444)
T ss_pred             cCHHHHHHHHHhhcC
Confidence            999999988888874

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.81  E-value=3.7e-19  Score=147.08  Aligned_cols=159  Identities=19%  Similarity=0.124  Sum_probs=107.1

Q ss_pred             CCCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCC-----------------------------CCCCeeeEEEEEEEEEC
Q 028251            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-----------------------------HDLTIGVEFGARMVTID   51 (211)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~   51 (211)
                      |+....++|+++|++++|||||+++|+.......                             .....|.+.......++
T Consensus         1 ~~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~   80 (425)
T PRK12317          1 AKEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFE   80 (425)
T ss_pred             CCCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEe
Confidence            6777889999999999999999999984322110                             01123555555555666


Q ss_pred             CEEEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHH-HHHHHHHHHHhcCCCCeEEEEEecCCCCCCCC--
Q 028251           52 GRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNH-LSSWLEDARQHANPNMSIMLVGNKCDLAHRRA--  128 (211)
Q Consensus        52 ~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--  128 (211)
                      .....+.||||||++.+.......+..+|++|+|+|++++..... ...++.......  ..|+++++||+|+.+...  
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~  158 (425)
T PRK12317         81 TDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLG--INQLIVAINKMDAVNYDEKR  158 (425)
T ss_pred             cCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcC--CCeEEEEEEccccccccHHH
Confidence            667789999999998887766666789999999999987311111 112222222221  347999999999964221  


Q ss_pred             --CCHHHHHHHHHHcC-----CcEEEEeCCCCCCHHHHHH
Q 028251          129 --VSKEEGEQFAKENG-----LLFLEASARTAQNVEEAFI  161 (211)
Q Consensus       129 --~~~~~~~~~~~~~~-----~~~~~~s~~~~~~i~~~~~  161 (211)
                        ...++...++...+     .+++++||++|.|+++..+
T Consensus       159 ~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~  198 (425)
T PRK12317        159 YEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE  198 (425)
T ss_pred             HHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence              11234445555444     4699999999999998553

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.81  E-value=1e-18  Score=126.40  Aligned_cols=150  Identities=19%  Similarity=0.250  Sum_probs=99.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc----------hhhchHHHhc
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES----------FRSITRSYYR   77 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~----------~~~~~~~~~~   77 (211)
                      .|+++|++|+|||||++.|.+....+...++.+.+.....+..+.   .+.+||+||...          +......++.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            489999999999999999997666555555555555555444444   788999999432          3333444443


Q ss_pred             ---cccEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCC--HHHHHHHHH--HcCCcEEEE
Q 028251           78 ---GAAGALLVYDITRRETF--NHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS--KEEGEQFAK--ENGLLFLEA  148 (211)
Q Consensus        78 ---~~d~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~--~~~~~~~~~  148 (211)
                         ..+++++++|..+..+.  ..+..|+..      .+.|+++++||+|+.......  .........  ....+++++
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  151 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEE------LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF  151 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHHHHHHHHHH------cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence               45688999998765321  222233322      268999999999985432111  112222222  234579999


Q ss_pred             eCCCCCCHHHHHHHHHHH
Q 028251          149 SARTAQNVEEAFIKTAAK  166 (211)
Q Consensus       149 s~~~~~~i~~~~~~i~~~  166 (211)
                      |++++.++.++++.|.+.
T Consensus       152 Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         152 SSLKGQGIDELRALIEKW  169 (170)
T ss_pred             ecCCCCCHHHHHHHHHHh
Confidence            999999999999988765

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.81  E-value=2.5e-18  Score=149.93  Aligned_cols=157  Identities=24%  Similarity=0.219  Sum_probs=108.2

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc----------hhhc-h
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES----------FRSI-T   72 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~----------~~~~-~   72 (211)
                      ..++|+++|.+|||||||+|+|++.... ....+.++.+.....+.+++..  +.+|||||...          +..+ .
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~  526 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRT  526 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHH
Confidence            4589999999999999999999988743 2223333444444455666655  56999999532          1111 2


Q ss_pred             HHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-H----cCCcEEE
Q 028251           73 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-E----NGLLFLE  147 (211)
Q Consensus        73 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~----~~~~~~~  147 (211)
                      ...++.+|++|+|+|+++..+...+. ++..+..   .++|+++|+||+|+.+...  .+....... .    ...++++
T Consensus       527 ~~~i~~advvilViDat~~~s~~~~~-i~~~~~~---~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~  600 (712)
T PRK09518        527 QAAIERSELALFLFDASQPISEQDLK-VMSMAVD---AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVN  600 (712)
T ss_pred             HHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEE
Confidence            34468899999999999987766654 3333332   3799999999999965321  122222221 1    2346799


Q ss_pred             EeCCCCCCHHHHHHHHHHHHHH
Q 028251          148 ASARTAQNVEEAFIKTAAKILQ  169 (211)
Q Consensus       148 ~s~~~~~~i~~~~~~i~~~~~~  169 (211)
                      +||++|.|++++++.+.+.+.+
T Consensus       601 iSAktg~gv~~L~~~i~~~~~~  622 (712)
T PRK09518        601 LSAKTGWHTNRLAPAMQEALES  622 (712)
T ss_pred             EECCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999887765

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.80  E-value=7.1e-18  Score=128.60  Aligned_cols=151  Identities=25%  Similarity=0.206  Sum_probs=101.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchh-------hchHHHhcccc
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR-------SITRSYYRGAA   80 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~-------~~~~~~~~~~d   80 (211)
                      +|+++|++|+|||||+++|.+........+..+.+.....+.+++  ..+++||+||.....       ......++.+|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            789999999999999999998764333333334444444445554  567899999974322       23345789999


Q ss_pred             EEEEEEECCCHH-HHHHHHHHHHH-----------------------------------------HHHh-----------
Q 028251           81 GALLVYDITRRE-TFNHLSSWLED-----------------------------------------ARQH-----------  107 (211)
Q Consensus        81 ~~i~v~d~~~~~-~~~~~~~~~~~-----------------------------------------~~~~-----------  107 (211)
                      ++++|+|++++. ....+...+..                                         +.++           
T Consensus        80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~  159 (233)
T cd01896          80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE  159 (233)
T ss_pred             EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence            999999998765 22222222210                                         0000           


Q ss_pred             -----------c--CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 028251          108 -----------A--NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI  167 (211)
Q Consensus       108 -----------~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~  167 (211)
                                 .  ..-.|+++|+||+|+..     .++...++.  ...++++||+++.|++++++.|.+.+
T Consensus       160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----~~~~~~~~~--~~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----IEELDLLAR--QPNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             CCCHHHHHHHHhCCceEeeEEEEEECccCCC-----HHHHHHHhc--CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence                       0  12368999999999843     344444443  34589999999999999999888754

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.80  E-value=5.1e-18  Score=129.62  Aligned_cols=113  Identities=18%  Similarity=0.155  Sum_probs=82.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCCCCCC----------------CCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhc
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVH----------------DLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI   71 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~   71 (211)
                      +|+++|+.|+|||||+++|+........                ....+.++......+.....++.+|||||+..+...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            5899999999999999999864221100                112233444444555555678999999999999888


Q ss_pred             hHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCC
Q 028251           72 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA  124 (211)
Q Consensus        72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  124 (211)
                      +..+++.+|++|+|+|+.+.... ....++..+..   .+.|+++++||+|+.
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~---~~~P~iivvNK~D~~  129 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK---LNIPTIIFVNKIDRA  129 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH---cCCCEEEEEECcccc
Confidence            89999999999999999886432 33445554443   378999999999985

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>PRK10218 GTP-binding protein; Provisional

Probab=99.79  E-value=5.2e-18  Score=144.18  Aligned_cols=159  Identities=18%  Similarity=0.147  Sum_probs=111.9

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhC--CCCCC------------CCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDK--RFQPV------------HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS   70 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~   70 (211)
                      ..-+|+++|+.++|||||+++|+..  .+...            .....+.++......++.....+.+|||||+..|..
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~   83 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG   83 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence            3468999999999999999999963  22221            123456777777777777778899999999999999


Q ss_pred             chHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCC-CCHHHHHHHHHH-------cC
Q 028251           71 ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA-VSKEEGEQFAKE-------NG  142 (211)
Q Consensus        71 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~-------~~  142 (211)
                      .+..+++.+|++|+|+|+.+..... ...++.....   .+.|.++++||+|+..... ...++...+...       ..
T Consensus        84 ~v~~~l~~aDg~ILVVDa~~G~~~q-t~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~  159 (607)
T PRK10218         84 EVERVMSMVDSVLLVVDAFDGPMPQ-TRFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLD  159 (607)
T ss_pred             HHHHHHHhCCEEEEEEecccCccHH-HHHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccC
Confidence            9999999999999999998753322 2333333332   3789999999999864321 112333333211       34


Q ss_pred             CcEEEEeCCCCC----------CHHHHHHHHHHHH
Q 028251          143 LLFLEASARTAQ----------NVEEAFIKTAAKI  167 (211)
Q Consensus       143 ~~~~~~s~~~~~----------~i~~~~~~i~~~~  167 (211)
                      ++++.+|+++|.          ++..+++.|.+.+
T Consensus       160 ~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i  194 (607)
T PRK10218        160 FPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV  194 (607)
T ss_pred             CCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence            679999999998          4555555444443

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.79  E-value=1.8e-18  Score=147.12  Aligned_cols=156  Identities=21%  Similarity=0.220  Sum_probs=111.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC--CCCCCC------------CCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchH
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK--RFQPVH------------DLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITR   73 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~   73 (211)
                      +|+++|+.++|||||+++|+..  .+....            ....|.++......++.....+.||||||+..|.....
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~   82 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE   82 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence            7999999999999999999863  221111            11235566655555655667899999999999999999


Q ss_pred             HHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC-CHHHHHHHHH-------HcCCcE
Q 028251           74 SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV-SKEEGEQFAK-------ENGLLF  145 (211)
Q Consensus        74 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~-------~~~~~~  145 (211)
                      .++..+|++++|+|+.+.. ......|+..+..   .+.|++|++||+|+.+.... ..++...+..       ...+++
T Consensus        83 ~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~---~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pv  158 (594)
T TIGR01394        83 RVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPI  158 (594)
T ss_pred             HHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH---CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcE
Confidence            9999999999999998742 3344455555544   37899999999998643211 1233333332       235679


Q ss_pred             EEEeCCCCC----------CHHHHHHHHHHHH
Q 028251          146 LEASARTAQ----------NVEEAFIKTAAKI  167 (211)
Q Consensus       146 ~~~s~~~~~----------~i~~~~~~i~~~~  167 (211)
                      +.+|+++|.          ++..+|+.|.+.+
T Consensus       159 l~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l  190 (594)
T TIGR01394       159 VYASGRAGWASLDLDDPSDNMAPLFDAIVRHV  190 (594)
T ss_pred             EechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence            999999996          6888877776655

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.79  E-value=1.7e-18  Score=143.14  Aligned_cols=154  Identities=19%  Similarity=0.139  Sum_probs=104.3

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCC--CCCC---------------------------CCCCeeeEEEEEEEEECCEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKR--FQPV---------------------------HDLTIGVEFGARMVTIDGRPI   55 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~   55 (211)
                      ..++|+++|+.++|||||+.+|+...  ....                           .....|.+.......+.....
T Consensus         6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~   85 (426)
T TIGR00483         6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKY   85 (426)
T ss_pred             ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCe
Confidence            56899999999999999999998521  1100                           001124445555555666667


Q ss_pred             EEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHH--HHHHhcCCCCeEEEEEecCCCCCCCCC----
Q 028251           56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLE--DARQHANPNMSIMLVGNKCDLAHRRAV----  129 (211)
Q Consensus        56 ~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~--~~~~~~~~~~p~ivv~nK~Dl~~~~~~----  129 (211)
                      .+.|||+||++.+.......+..+|++|+|+|+++.++... ..+..  .+.... ...|++|++||+|+.+....    
T Consensus        86 ~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~-~~t~~~~~~~~~~-~~~~iIVviNK~Dl~~~~~~~~~~  163 (426)
T TIGR00483        86 EVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQ-PQTREHAFLARTL-GINQLIVAINKMDSVNYDEEEFEA  163 (426)
T ss_pred             EEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccC-CchHHHHHHHHHc-CCCeEEEEEEChhccCccHHHHHH
Confidence            89999999999887777777889999999999998743211 11111  122222 13579999999999642211    


Q ss_pred             CHHHHHHHHHHcC-----CcEEEEeCCCCCCHHHHH
Q 028251          130 SKEEGEQFAKENG-----LLFLEASARTAQNVEEAF  160 (211)
Q Consensus       130 ~~~~~~~~~~~~~-----~~~~~~s~~~~~~i~~~~  160 (211)
                      ..+++..++...+     ++++++||++|.|+.+.+
T Consensus       164 ~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~  199 (426)
T TIGR00483       164 IKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS  199 (426)
T ss_pred             HHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence            1234555665554     569999999999998754

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.79  E-value=1.8e-18  Score=129.92  Aligned_cols=149  Identities=19%  Similarity=0.149  Sum_probs=95.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCCCCCC-----------------------------CCCeeeEEEEEEEEECCEEEEEE
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVH-----------------------------DLTIGVEFGARMVTIDGRPIKLQ   58 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~l~   58 (211)
                      +|+++|++++|||||+++|+...-....                             ....+.+.......+......+.
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~   80 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI   80 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence            6899999999999999999754322110                             00023333333333444455788


Q ss_pred             EEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC----CHHHH
Q 028251           59 IWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV----SKEEG  134 (211)
Q Consensus        59 l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~~~  134 (211)
                      ||||||++.+.......+..+|++|+|+|++++..-.. ...+..+....  ..++++++||+|+.+....    ...+.
T Consensus        81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~~~~~~~--~~~iIvviNK~D~~~~~~~~~~~i~~~~  157 (208)
T cd04166          81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSYILSLLG--IRHVVVAVNKMDLVDYSEEVFEEIVADY  157 (208)
T ss_pred             EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHHHHHHcC--CCcEEEEEEchhcccCCHHHHHHHHHHH
Confidence            99999998887667777899999999999987532111 12222222221  2457888999998642211    11233


Q ss_pred             HHHHHHcC---CcEEEEeCCCCCCHHHH
Q 028251          135 EQFAKENG---LLFLEASARTAQNVEEA  159 (211)
Q Consensus       135 ~~~~~~~~---~~~~~~s~~~~~~i~~~  159 (211)
                      ..+....+   .+++++||+++.|+.+.
T Consensus       158 ~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         158 LAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            44445555   34899999999998864

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.79  E-value=1.4e-18  Score=117.79  Aligned_cols=156  Identities=22%  Similarity=0.319  Sum_probs=115.4

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ...++|+++|-.++|||||++.|.+... ....++.|..  .+.+..++ .+.+.+||.+|+...+..|..|+.+.|++|
T Consensus        15 ~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~GFn--~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~lI   90 (185)
T KOG0074|consen   15 RREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNGFN--TKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGLI   90 (185)
T ss_pred             cceEEEEEEecCCCcchhHHHHHccCCh-hhccccCCcc--eEEEeecC-cEEEEEEecCCccccchhhhhhhhccceEE
Confidence            4679999999999999999999986543 2333444443  33344443 678999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC-----CcEEEEeCCCCCCHH
Q 028251           84 LVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG-----LLFLEASARTAQNVE  157 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~~s~~~~~~i~  157 (211)
                      ||+|.+|.-.|+.+..-+-++.... ....|+.|+.||.|+.-.  +..++....+...+     .-+-++|+..++|+.
T Consensus        91 yVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllta--a~~eeia~klnl~~lrdRswhIq~csals~eg~~  168 (185)
T KOG0074|consen   91 YVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTA--AKVEEIALKLNLAGLRDRSWHIQECSALSLEGST  168 (185)
T ss_pred             EEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhh--cchHHHHHhcchhhhhhceEEeeeCccccccCcc
Confidence            9999999888887776555554433 368999999999998532  22333332222222     237899999999998


Q ss_pred             HHHHHHHH
Q 028251          158 EAFIKTAA  165 (211)
Q Consensus       158 ~~~~~i~~  165 (211)
                      +-.+++..
T Consensus       169 dg~~wv~s  176 (185)
T KOG0074|consen  169 DGSDWVQS  176 (185)
T ss_pred             Ccchhhhc
Confidence            88777654

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.78  E-value=4.7e-18  Score=136.83  Aligned_cols=154  Identities=22%  Similarity=0.235  Sum_probs=109.4

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCC-CCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhc--------hHHH
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI--------TRSY   75 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~--------~~~~   75 (211)
                      .-++++++|.|++|||||+|.|++...... ..+-++.+.-...+.++|.+  +.+.||+|..+....        ....
T Consensus       216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~p--v~l~DTAGiRet~d~VE~iGIeRs~~~  293 (454)
T COG0486         216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIP--VRLVDTAGIRETDDVVERIGIERAKKA  293 (454)
T ss_pred             cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEE--EEEEecCCcccCccHHHHHHHHHHHHH
Confidence            358999999999999999999998876543 33333455555556666655  679999996654442        3455


Q ss_pred             hccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCC
Q 028251           76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQN  155 (211)
Q Consensus        76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  155 (211)
                      +.++|.+++|+|.+.+.+-..... +.    ....++|+++|.||.|+.......  .   .....+.+++.+|++++.|
T Consensus       294 i~~ADlvL~v~D~~~~~~~~d~~~-~~----~~~~~~~~i~v~NK~DL~~~~~~~--~---~~~~~~~~~i~iSa~t~~G  363 (454)
T COG0486         294 IEEADLVLFVLDASQPLDKEDLAL-IE----LLPKKKPIIVVLNKADLVSKIELE--S---EKLANGDAIISISAKTGEG  363 (454)
T ss_pred             HHhCCEEEEEEeCCCCCchhhHHH-HH----hcccCCCEEEEEechhcccccccc--h---hhccCCCceEEEEecCccC
Confidence            789999999999998632222111 11    233489999999999997643311  1   1112445799999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 028251          156 VEEAFIKTAAKILQN  170 (211)
Q Consensus       156 i~~~~~~i~~~~~~~  170 (211)
                      ++++.+.|.+.+...
T Consensus       364 l~~L~~~i~~~~~~~  378 (454)
T COG0486         364 LDALREAIKQLFGKG  378 (454)
T ss_pred             HHHHHHHHHHHHhhc
Confidence            999999988888766

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.78  E-value=9e-18  Score=134.89  Aligned_cols=160  Identities=24%  Similarity=0.183  Sum_probs=111.5

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc----------hhh-chH
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES----------FRS-ITR   73 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~----------~~~-~~~   73 (211)
                      ..++|+++|.|++|||||+|+|++..-...+..+ |++.......++.....+.++||+|..+          +.. -..
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~a-GTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~  255 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIA-GTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTL  255 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEecCCC-CccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhH
Confidence            4699999999999999999999988765444433 4455444444443344577999999432          211 244


Q ss_pred             HHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-----cCCcEEEE
Q 028251           74 SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-----NGLLFLEA  148 (211)
Q Consensus        74 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~  148 (211)
                      ..+..+|.+++|+|+..+.+-+..+ ....+.   +.+.+++|++||+|+.+......++.+.....     ..++++++
T Consensus       256 ~aI~~a~vvllviDa~~~~~~qD~~-ia~~i~---~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~i  331 (444)
T COG1160         256 KAIERADVVLLVIDATEGISEQDLR-IAGLIE---EAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFI  331 (444)
T ss_pred             hHHhhcCEEEEEEECCCCchHHHHH-HHHHHH---HcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEE
Confidence            5678899999999999876543332 122222   23899999999999977544445554433332     24579999


Q ss_pred             eCCCCCCHHHHHHHHHHHHHH
Q 028251          149 SARTAQNVEEAFIKTAAKILQ  169 (211)
Q Consensus       149 s~~~~~~i~~~~~~i~~~~~~  169 (211)
                      ||+++.++.++|+.+.+....
T Consensus       332 SA~~~~~i~~l~~~i~~~~~~  352 (444)
T COG1160         332 SALTGQGLDKLFEAIKEIYEC  352 (444)
T ss_pred             EecCCCChHHHHHHHHHHHHH
Confidence            999999999999988776544

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.78  E-value=1.4e-17  Score=120.73  Aligned_cols=160  Identities=18%  Similarity=0.201  Sum_probs=114.0

Q ss_pred             CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCC----------ccchhhc
Q 028251            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG----------QESFRSI   71 (211)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G----------~~~~~~~   71 (211)
                      +.+..+.|+++|.++||||||||+|++++-......++|.|.....+.+++.   +.++|.||          .+.+..+
T Consensus        20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~   96 (200)
T COG0218          20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKL   96 (200)
T ss_pred             CCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHH
Confidence            3456789999999999999999999998765555566699999888888775   66999999          3455556


Q ss_pred             hHHHhcc---ccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH----cCCc
Q 028251           72 TRSYYRG---AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE----NGLL  144 (211)
Q Consensus        72 ~~~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~  144 (211)
                      ...|+..   ..++++++|+..+..-.+. .+++.+..   .+.|++|++||+|.....+.. ......+..    ....
T Consensus        97 i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~---~~i~~~vv~tK~DKi~~~~~~-k~l~~v~~~l~~~~~~~  171 (200)
T COG0218          97 IEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLE---LGIPVIVVLTKADKLKKSERN-KQLNKVAEELKKPPPDD  171 (200)
T ss_pred             HHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHH---cCCCeEEEEEccccCChhHHH-HHHHHHHHHhcCCCCcc
Confidence            6666644   4589999999886432221 33333333   389999999999986643332 222233322    2222


Q ss_pred             --EEEEeCCCCCCHHHHHHHHHHHHHH
Q 028251          145 --FLEASARTAQNVEEAFIKTAAKILQ  169 (211)
Q Consensus       145 --~~~~s~~~~~~i~~~~~~i~~~~~~  169 (211)
                        ++.+|+..+.|++++...|.+.+..
T Consensus       172 ~~~~~~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         172 QWVVLFSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             ceEEEEecccccCHHHHHHHHHHHhhc
Confidence              7889999999999998888887643

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.78  E-value=7.1e-18  Score=117.08  Aligned_cols=135  Identities=23%  Similarity=0.256  Sum_probs=97.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCC----ccchhhchHHHhccccEEE
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG----QESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G----~~~~~~~~~~~~~~~d~~i   83 (211)
                      ||+++|+.|||||||+++|.+...  .+..+..+.+       .+     .++||||    ...+.........++|.++
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~-------~~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~   68 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEY-------YD-----NTIDTPGEYIENPRFYHALIVTAQDADVVL   68 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEe-------cc-----cEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence            799999999999999999997654  3333322222       11     2589999    3344444555667999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCc-EEEEeCCCCCCHHHHHHH
Q 028251           84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIK  162 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~i~~~~~~  162 (211)
                      +|.|++++.+..     -..+....  +.|+|=|+||+|+... ....+.++++.+..|+. +|++|+.+|+|++++.++
T Consensus        69 ll~dat~~~~~~-----pP~fa~~f--~~pvIGVITK~Dl~~~-~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~  140 (143)
T PF10662_consen   69 LLQDATEPRSVF-----PPGFASMF--NKPVIGVITKIDLPSD-DANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY  140 (143)
T ss_pred             EEecCCCCCccC-----Cchhhccc--CCCEEEEEECccCccc-hhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence            999999864311     11222222  6899999999999732 33557777888888874 899999999999999887


Q ss_pred             HH
Q 028251          163 TA  164 (211)
Q Consensus       163 i~  164 (211)
                      |.
T Consensus       141 L~  142 (143)
T PF10662_consen  141 LE  142 (143)
T ss_pred             Hh
Confidence            74

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.78  E-value=4.8e-18  Score=139.44  Aligned_cols=161  Identities=19%  Similarity=0.163  Sum_probs=103.5

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCC-CCeeeEEEEEE--------------------EEECC------EEEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVEFGARM--------------------VTIDG------RPIKL   57 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~--------------------~~~~~------~~~~l   57 (211)
                      ..++|+++|+.++|||||+++|.+........ ...+.+.....                    ...++      ....+
T Consensus         3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   82 (406)
T TIGR03680         3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV   82 (406)
T ss_pred             ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence            46899999999999999999997542211000 00111111110                    00011      14578


Q ss_pred             EEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC--CHHHHH
Q 028251           58 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--SKEEGE  135 (211)
Q Consensus        58 ~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~  135 (211)
                      .+||+||++.+...+...+..+|++|+|+|++++.........+..+....  ..|+++++||+|+.+....  ..+++.
T Consensus        83 ~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~g--i~~iIVvvNK~Dl~~~~~~~~~~~~i~  160 (406)
T TIGR03680        83 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIG--IKNIVIVQNKIDLVSKEKALENYEEIK  160 (406)
T ss_pred             EEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcC--CCeEEEEEEccccCCHHHHHHHHHHHH
Confidence            999999999998888888889999999999986431111222222222221  3578999999999653211  123333


Q ss_pred             HHHHHc---CCcEEEEeCCCCCCHHHHHHHHHHHH
Q 028251          136 QFAKEN---GLLFLEASARTAQNVEEAFIKTAAKI  167 (211)
Q Consensus       136 ~~~~~~---~~~~~~~s~~~~~~i~~~~~~i~~~~  167 (211)
                      .+....   +++++++|+++|.|++++++.|...+
T Consensus       161 ~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l  195 (406)
T TIGR03680       161 EFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI  195 (406)
T ss_pred             hhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence            333332   56899999999999999998888755

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.77  E-value=2.2e-17  Score=122.50  Aligned_cols=148  Identities=18%  Similarity=0.154  Sum_probs=100.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCC---------C-----CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhc
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQ---------P-----VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI   71 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~---------~-----~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~   71 (211)
                      .++|+++|+.++|||||+++|+.....         .     ......+.+.......+.....++.+.||||+..+...
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~   81 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN   81 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence            478999999999999999999854100         0     01112355555555566666677899999999888887


Q ss_pred             hHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEecCCCCCCCCC---CHHHHHHHHHHc-----C
Q 028251           72 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAV---SKEEGEQFAKEN-----G  142 (211)
Q Consensus        72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~-----~  142 (211)
                      ....+..+|++++|+|+..... ......+..+...   +.| +++++||+|+......   ..+++..+....     +
T Consensus        82 ~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~~---~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~  157 (195)
T cd01884          82 MITGAAQMDGAILVVSATDGPM-PQTREHLLLARQV---GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDN  157 (195)
T ss_pred             HHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccC
Confidence            8888899999999999987432 1222333333332   566 7789999998532221   112344444443     3


Q ss_pred             CcEEEEeCCCCCCHH
Q 028251          143 LLFLEASARTAQNVE  157 (211)
Q Consensus       143 ~~~~~~s~~~~~~i~  157 (211)
                      ++++++||++|.++.
T Consensus       158 v~iipiSa~~g~n~~  172 (195)
T cd01884         158 TPIVRGSALKALEGD  172 (195)
T ss_pred             CeEEEeeCccccCCC
Confidence            679999999998853

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=5.4e-19  Score=120.10  Aligned_cols=162  Identities=22%  Similarity=0.305  Sum_probs=117.8

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      +...+|+++|-.|+|||++..++.-.....+ .|+++...    .++..++..+++||..|+-..+..|..|+.+.|++|
T Consensus        16 e~e~rililgldGaGkttIlyrlqvgevvtt-kPtigfnv----e~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avI   90 (182)
T KOG0072|consen   16 EREMRILILGLDGAGKTTILYRLQVGEVVTT-KPTIGFNV----ETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVI   90 (182)
T ss_pred             ccceEEEEeeccCCCeeEEEEEcccCccccc-CCCCCcCc----cccccccccceeeEccCcccccHHHHHHhcccceEE
Confidence            4678999999999999999888875554333 33434443    234447788999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHH-HHHHHHhcCCCCeEEEEEecCCCCCCC---CCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Q 028251           84 LVYDITRRETFNHLSSW-LEDARQHANPNMSIMLVGNKCDLAHRR---AVSKEEGEQFAKENGLLFLEASARTAQNVEEA  159 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~p~ivv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~  159 (211)
                      +|+|.+|.......... +..+.+...++..+++++||.|.....   ++...+.....+..-+.++++||.+|+|++..
T Consensus        91 yVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~  170 (182)
T KOG0072|consen   91 YVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPA  170 (182)
T ss_pred             EEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHH
Confidence            99999998765444433 333444444678889999999985321   11111222222333467999999999999999


Q ss_pred             HHHHHHHHHHH
Q 028251          160 FIKTAAKILQN  170 (211)
Q Consensus       160 ~~~i~~~~~~~  170 (211)
                      ++|+.+.+.++
T Consensus       171 ~DWL~~~l~~~  181 (182)
T KOG0072|consen  171 MDWLQRPLKSR  181 (182)
T ss_pred             HHHHHHHHhcc
Confidence            99999887553

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.77  E-value=4.6e-17  Score=138.48  Aligned_cols=160  Identities=21%  Similarity=0.217  Sum_probs=103.2

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCC----eeeEEEEEEEE--ECCEE-----E-----EEEEEeCCCccch
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT----IGVEFGARMVT--IDGRP-----I-----KLQIWDTAGQESF   68 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~----~~~~~~~~~~~--~~~~~-----~-----~l~l~D~~G~~~~   68 (211)
                      ..+.|+++|+.++|||||+++|.+..........    .|.++......  ..+..     .     .+.||||||++.|
T Consensus         5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f   84 (586)
T PRK04004          5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF   84 (586)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence            4567999999999999999999876543333221    12221111000  00111     1     2689999999999


Q ss_pred             hhchHHHhccccEEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCC----CC-----------
Q 028251           69 RSITRSYYRGAAGALLVYDITR---RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA----VS-----------  130 (211)
Q Consensus        69 ~~~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----~~-----------  130 (211)
                      ..++...+..+|++|+|+|+++   +.++..+..    +..   .+.|+++++||+|+.....    ..           
T Consensus        85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~  157 (586)
T PRK04004         85 TNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQR  157 (586)
T ss_pred             HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHH
Confidence            9988888899999999999987   555444432    222   3789999999999852100    00           


Q ss_pred             -HHH-------HHHHHHH---------------cCCcEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 028251          131 -KEE-------GEQFAKE---------------NGLLFLEASARTAQNVEEAFIKTAAKILQNI  171 (211)
Q Consensus       131 -~~~-------~~~~~~~---------------~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~  171 (211)
                       .+.       .......               ..++++++||.+|.|++++++.+.....+.+
T Consensus       158 v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~~l  221 (586)
T PRK04004        158 VQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQRYL  221 (586)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHHHHH
Confidence             000       0011111               1356899999999999999988875554433

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.77  E-value=4.9e-18  Score=128.13  Aligned_cols=162  Identities=20%  Similarity=0.327  Sum_probs=102.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEE-CCEEEEEEEEeCCCccchhh-----chHHHhccccE
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTI-DGRPIKLQIWDTAGQESFRS-----ITRSYYRGAAG   81 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~l~D~~G~~~~~~-----~~~~~~~~~d~   81 (211)
                      ||+++|+.++||||+.+. ..++..+......+.+......++ ....+.+++||+||+..+..     .....++.+++
T Consensus         1 KiLLmG~~~SGKTSi~~v-IF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~   79 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSV-IFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV   79 (232)
T ss_dssp             EEEEEESTTSSHHHHHHH-HHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred             CEEEEcCCCCChhhHHHH-HHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence            799999999999996554 445555544454455555554545 23456799999999875544     46788999999


Q ss_pred             EEEEEECCCHHHHHH---HHHHHHHHHHhcCCCCeEEEEEecCCCCCCCC--CCH----HHHHHHHHHcC---CcEEEEe
Q 028251           82 ALLVYDITRRETFNH---LSSWLEDARQHANPNMSIMLVGNKCDLAHRRA--VSK----EEGEQFAKENG---LLFLEAS  149 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~---~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~----~~~~~~~~~~~---~~~~~~s  149 (211)
                      +|||+|+.+.+..+.   +...+..+.+.. ++..+.|+++|+|+..+..  ...    +...+.+...+   +.++.+|
T Consensus        80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~s-p~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS  158 (232)
T PF04670_consen   80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYS-PNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS  158 (232)
T ss_dssp             EEEEEETT-STCHHHHHHHHHHHHHHHHHS-TT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred             EEEEEEcccccHHHHHHHHHHHHHHHHHhC-CCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence            999999985433333   444444444444 5899999999999854211  111    12223333444   6799999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHh
Q 028251          150 ARTAQNVEEAFIKTAAKILQNIQ  172 (211)
Q Consensus       150 ~~~~~~i~~~~~~i~~~~~~~~~  172 (211)
                      ..+ +.+.+++..|++.+.-+.+
T Consensus       159 I~D-~Sly~A~S~Ivq~LiP~~~  180 (232)
T PF04670_consen  159 IWD-ESLYEAWSKIVQKLIPNLS  180 (232)
T ss_dssp             TTS-THHHHHHHHHHHTTSTTHC
T ss_pred             CcC-cHHHHHHHHHHHHHcccHH
Confidence            999 5999999999998875544

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.76  E-value=1.1e-17  Score=137.25  Aligned_cols=161  Identities=20%  Similarity=0.196  Sum_probs=101.6

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCC-CCCeeeEEEEEE--EEE------------------C--C----EEEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-DLTIGVEFGARM--VTI------------------D--G----RPIK   56 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~--~~~------------------~--~----~~~~   56 (211)
                      ...++|+++|+.++|||||+.+|.+....... ....+.+.....  ..+                  +  +    ....
T Consensus         7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (411)
T PRK04000          7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR   86 (411)
T ss_pred             CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence            46789999999999999999999653211110 001122222110  000                  0  0    1257


Q ss_pred             EEEEeCCCccchhhchHHHhccccEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC--CHHH
Q 028251           57 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--SKEE  133 (211)
Q Consensus        57 l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~  133 (211)
                      +.||||||++.+..........+|++++|+|+.++. ..... ..+..+....  ..|+++++||+|+.+....  ..++
T Consensus        87 i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~-~~l~~l~~~~--i~~iiVVlNK~Dl~~~~~~~~~~~~  163 (411)
T PRK04000         87 VSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTK-EHLMALDIIG--IKNIVIVQNKIDLVSKERALENYEQ  163 (411)
T ss_pred             EEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHH-HHHHHHHHcC--CCcEEEEEEeeccccchhHHHHHHH
Confidence            899999999888776666667789999999999642 11111 1122222221  3478999999999653321  1233


Q ss_pred             HHHHHHH---cCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 028251          134 GEQFAKE---NGLLFLEASARTAQNVEEAFIKTAAKI  167 (211)
Q Consensus       134 ~~~~~~~---~~~~~~~~s~~~~~~i~~~~~~i~~~~  167 (211)
                      ...++..   .+.+++++||+++.|++++++.|.+.+
T Consensus       164 i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l  200 (411)
T PRK04000        164 IKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI  200 (411)
T ss_pred             HHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence            3344332   246899999999999999999887765

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.76  E-value=3.4e-17  Score=139.97  Aligned_cols=156  Identities=15%  Similarity=0.132  Sum_probs=102.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCC---CCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKR---FQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      +-|+++|+.++|||||+++|.+..   +.++.....+.+.....+...+ ...+.+||+||++.+.......+..+|+++
T Consensus         1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~l   79 (614)
T PRK10512          1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHAL   79 (614)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence            358999999999999999999643   2222222223333222222222 234789999999999888888889999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEecCCCCCCCCC--CHHHHHHHHHHcC---CcEEEEeCCCCCCHH
Q 028251           84 LVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAV--SKEEGEQFAKENG---LLFLEASARTAQNVE  157 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~---~~~~~~s~~~~~~i~  157 (211)
                      +|+|+++... ......+..+...   +.| ++||+||+|+.+....  ..++...+....+   .+++++|+++|.|++
T Consensus        80 LVVda~eg~~-~qT~ehl~il~~l---gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~  155 (614)
T PRK10512         80 LVVACDDGVM-AQTREHLAILQLT---GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGID  155 (614)
T ss_pred             EEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCH
Confidence            9999987321 1111222222222   455 5799999999653221  1233444444433   679999999999999


Q ss_pred             HHHHHHHHHH
Q 028251          158 EAFIKTAAKI  167 (211)
Q Consensus       158 ~~~~~i~~~~  167 (211)
                      ++++.|.+..
T Consensus       156 ~L~~~L~~~~  165 (614)
T PRK10512        156 ALREHLLQLP  165 (614)
T ss_pred             HHHHHHHHhh
Confidence            9999887654

>cd04167 Snu114p Snu114p subfamily

Probab=99.76  E-value=1.3e-17  Score=125.74  Aligned_cols=113  Identities=24%  Similarity=0.321  Sum_probs=80.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCCCCCC-----------------CCCeeeEEEEEEEEE-----CCEEEEEEEEeCCCc
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVH-----------------DLTIGVEFGARMVTI-----DGRPIKLQIWDTAGQ   65 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~~-----~~~~~~l~l~D~~G~   65 (211)
                      +|+++|+.++|||||+++|+........                 ....+.++....+.+     ++..+.+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            6899999999999999999875443220                 011223333222222     355688999999999


Q ss_pred             cchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCC
Q 028251           66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA  124 (211)
Q Consensus        66 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  124 (211)
                      ..+......++..+|++|+|+|+.+..+... ..++.....   .+.|+++++||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence            9998888889999999999999987654432 233333322   368999999999975

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>COG2262 HflX GTPases [General function prediction only]

Probab=99.75  E-value=7.7e-17  Score=127.80  Aligned_cols=162  Identities=22%  Similarity=0.158  Sum_probs=121.3

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc---------hhhchHHH
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES---------FRSITRSY   75 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~---------~~~~~~~~   75 (211)
                      ..+.|.++|..++|||||+|+|++.........+.+.+.....+.+.+ ...+.+.||.|.-+         |.+ +...
T Consensus       191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFks-TLEE  268 (411)
T COG2262         191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKS-TLEE  268 (411)
T ss_pred             CCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHH-HHHH
Confidence            457899999999999999999998776655555556666666677765 34577999999432         222 3334


Q ss_pred             hccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCC
Q 028251           76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQN  155 (211)
Q Consensus        76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  155 (211)
                      ...+|+++.|+|+++|....++......+........|+++|.||.|+..... .......   ..+ ..+.+||+++.|
T Consensus       269 ~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~-~~~~~~~---~~~-~~v~iSA~~~~g  343 (411)
T COG2262         269 VKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE-ILAELER---GSP-NPVFISAKTGEG  343 (411)
T ss_pred             hhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh-hhhhhhh---cCC-CeEEEEeccCcC
Confidence            56899999999999998888888777777777666799999999999865433 1111111   122 589999999999


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 028251          156 VEEAFIKTAAKILQNIQE  173 (211)
Q Consensus       156 i~~~~~~i~~~~~~~~~~  173 (211)
                      ++.+.+.|.+.+......
T Consensus       344 l~~L~~~i~~~l~~~~~~  361 (411)
T COG2262         344 LDLLRERIIELLSGLRTE  361 (411)
T ss_pred             HHHHHHHHHHHhhhcccc
Confidence            999999999888765543

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.75  E-value=6.2e-18  Score=128.01  Aligned_cols=148  Identities=20%  Similarity=0.166  Sum_probs=94.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCCCC-----------------------------CCCCCeeeEEEEEEEEECCEEEEEE
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRFQP-----------------------------VHDLTIGVEFGARMVTIDGRPIKLQ   58 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~l~   58 (211)
                      +|+++|+.++|||||+.+|+......                             ......+.+.......+......+.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            58999999999999999996431100                             0001124444444455555567789


Q ss_pred             EEeCCCccchhhchHHHhccccEEEEEEECCCHHH------HHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCC--CCCC
Q 028251           59 IWDTAGQESFRSITRSYYRGAAGALLVYDITRRET------FNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR--RAVS  130 (211)
Q Consensus        59 l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~  130 (211)
                      +|||||+..+.......+..+|++|+|+|+.+...      .......+......  ...|+++++||+|+...  ....
T Consensus        81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~  158 (219)
T cd01883          81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL--GVKQLIVAVNKMDDVTVNWSEER  158 (219)
T ss_pred             EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc--CCCeEEEEEEccccccccccHHH
Confidence            99999998877777777889999999999988421      11112222222222  13689999999999632  1111


Q ss_pred             ----HHHHHHHHHHc-----CCcEEEEeCCCCCCHH
Q 028251          131 ----KEEGEQFAKEN-----GLLFLEASARTAQNVE  157 (211)
Q Consensus       131 ----~~~~~~~~~~~-----~~~~~~~s~~~~~~i~  157 (211)
                          .+++..+....     +++++++||++|.|++
T Consensus       159 ~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         159 YDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             HHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence                12222233343     3569999999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.74  E-value=7.5e-17  Score=123.59  Aligned_cols=156  Identities=19%  Similarity=0.212  Sum_probs=116.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh----chHHH---hccc
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS----ITRSY---YRGA   79 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~----~~~~~---~~~~   79 (211)
                      ..|.+||.|++|||||+++|...+--...+++++......++.+++.. ++.+-|.||.-.-..    +-..|   +..+
T Consensus       197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER~  275 (366)
T KOG1489|consen  197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIERC  275 (366)
T ss_pred             cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHhh
Confidence            457899999999999999999887666666665666666666666544 388999999432221    22223   4568


Q ss_pred             cEEEEEEECCCH---HHHHHHHHHHHHHHHhcC--CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCc-EEEEeCCCC
Q 028251           80 AGALLVYDITRR---ETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL-FLEASARTA  153 (211)
Q Consensus        80 d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~  153 (211)
                      +.++||+|++.+   ..|+.+..++.++..+.+  .+.|.+||+||+|+++.+   .....+++....-+ ++++||+.+
T Consensus       276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae---~~~l~~L~~~lq~~~V~pvsA~~~  352 (366)
T KOG1489|consen  276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE---KNLLSSLAKRLQNPHVVPVSAKSG  352 (366)
T ss_pred             ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH---HHHHHHHHHHcCCCcEEEeeeccc
Confidence            899999999998   888888888887766554  789999999999996322   22245566655544 999999999


Q ss_pred             CCHHHHHHHHHHH
Q 028251          154 QNVEEAFIKTAAK  166 (211)
Q Consensus       154 ~~i~~~~~~i~~~  166 (211)
                      +++.++++.|.+.
T Consensus       353 egl~~ll~~lr~~  365 (366)
T KOG1489|consen  353 EGLEELLNGLREL  365 (366)
T ss_pred             cchHHHHHHHhhc
Confidence            9999998877653

>PRK12736 elongation factor Tu; Reviewed

Probab=99.73  E-value=1.2e-16  Score=130.69  Aligned_cols=146  Identities=18%  Similarity=0.150  Sum_probs=98.5

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCC--------------CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP--------------VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS   70 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~   70 (211)
                      ..++|+++|+.++|||||+++|++.....              ......|.+.......+......+.+|||||++.|..
T Consensus        11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~~   90 (394)
T PRK12736         11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYVK   90 (394)
T ss_pred             CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHHH
Confidence            56899999999999999999998631100              0111335555555566655566789999999998887


Q ss_pred             chHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEecCCCCCCCCCC---HHHHHHHHHHcC----
Q 028251           71 ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAVS---KEEGEQFAKENG----  142 (211)
Q Consensus        71 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~----  142 (211)
                      .....+..+|++++|+|+.+...-. ....+..+...   +.| +++++||+|+.+..+..   .++...+....+    
T Consensus        91 ~~~~~~~~~d~~llVvd~~~g~~~~-t~~~~~~~~~~---g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~  166 (394)
T PRK12736         91 NMITGAAQMDGAILVVAATDGPMPQ-TREHILLARQV---GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPGD  166 (394)
T ss_pred             HHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHHc---CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCcC
Confidence            7777788999999999998742211 12222333332   677 67889999986432211   123444444443    


Q ss_pred             -CcEEEEeCCCCC
Q 028251          143 -LLFLEASARTAQ  154 (211)
Q Consensus       143 -~~~~~~s~~~~~  154 (211)
                       ++++++|+++|.
T Consensus       167 ~~~ii~vSa~~g~  179 (394)
T PRK12736        167 DIPVIRGSALKAL  179 (394)
T ss_pred             CccEEEeeccccc
Confidence             579999999983

>cd04169 RF3 RF3 subfamily

Probab=99.73  E-value=2.4e-16  Score=122.36  Aligned_cols=115  Identities=19%  Similarity=0.204  Sum_probs=82.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCC--------------------CCeeeEEEEEEEEECCEEEEEEEEeCCCcc
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHD--------------------LTIGVEFGARMVTIDGRPIKLQIWDTAGQE   66 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~   66 (211)
                      -+|+|+|++|+|||||+++|+.........                    ...+.++......++.....+.+|||||+.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            369999999999999999998532111100                    011344445555666667889999999999


Q ss_pred             chhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCC
Q 028251           67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH  125 (211)
Q Consensus        67 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  125 (211)
                      .+.......++.+|++|+|+|+.+... .....++.....   .+.|+++++||+|+..
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g~~-~~~~~i~~~~~~---~~~P~iivvNK~D~~~  137 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKGVE-PQTRKLFEVCRL---RGIPIITFINKLDREG  137 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCcc-HHHHHHHHHHHh---cCCCEEEEEECCccCC
Confidence            888777788899999999999987532 222333333322   3789999999999854

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.73  E-value=3.2e-16  Score=116.79  Aligned_cols=159  Identities=13%  Similarity=0.121  Sum_probs=94.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeee---EEEEEEEEECCEEEEEEEEeCCCccchhhchHHH-----hc
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV---EFGARMVTIDGRPIKLQIWDTAGQESFRSITRSY-----YR   77 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~-----~~   77 (211)
                      +++|+++|.+|+|||||+|+|++.........+.+.   +.....+.... ...+.+||+||..........+     +.
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~~l~~~~~~   79 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPK-FPNVTLWDLPGIGSTAFPPDDYLEEMKFS   79 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCC-CCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence            478999999999999999999986553322222221   11111111111 2358899999975432222222     56


Q ss_pred             cccEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEecCCCCCCCC-----------CCHHHHHHHHH----Hc
Q 028251           78 GAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAHRRA-----------VSKEEGEQFAK----EN  141 (211)
Q Consensus        78 ~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-----------~~~~~~~~~~~----~~  141 (211)
                      .+|++++|.+.  +  +... ..|+..+...   +.|+++|+||+|+.....           ...++....+.    ..
T Consensus        80 ~~d~~l~v~~~--~--~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~  152 (197)
T cd04104          80 EYDFFIIISST--R--FSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEA  152 (197)
T ss_pred             CcCEEEEEeCC--C--CCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHc
Confidence            78888887542  1  2222 2444555443   689999999999842111           01112222222    22


Q ss_pred             C---CcEEEEeCC--CCCCHHHHHHHHHHHHHHHHh
Q 028251          142 G---LLFLEASAR--TAQNVEEAFIKTAAKILQNIQ  172 (211)
Q Consensus       142 ~---~~~~~~s~~--~~~~i~~~~~~i~~~~~~~~~  172 (211)
                      +   .+++.+|+.  .+.++.++.+.|...+.+...
T Consensus       153 ~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~  188 (197)
T cd04104         153 GVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKR  188 (197)
T ss_pred             CCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHH
Confidence            2   258999998  568888888888877765443

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.72  E-value=2.2e-16  Score=132.27  Aligned_cols=156  Identities=19%  Similarity=0.187  Sum_probs=110.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc------hhhchHHHh--c
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES------FRSITRSYY--R   77 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~------~~~~~~~~~--~   77 (211)
                      ..+|+++|.||+|||||+|+|++......-.+-++++.........+  .++++.|.||-=.      -.....+++  .
T Consensus         3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~--~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~   80 (653)
T COG0370           3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKG--HEIEIVDLPGTYSLTAYSEDEKVARDFLLEG   80 (653)
T ss_pred             cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecC--ceEEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence            45699999999999999999998877665555545555544444444  4478999999321      122334443  4


Q ss_pred             cccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHH
Q 028251           78 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVE  157 (211)
Q Consensus        78 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  157 (211)
                      ..|++|-|+|+++.+...++.-   ++.+   -+.|++++.|+.|..+..-+. -+.+++.+..|+|+++++|++|.|++
T Consensus        81 ~~D~ivnVvDAtnLeRnLyltl---QLlE---~g~p~ilaLNm~D~A~~~Gi~-ID~~~L~~~LGvPVv~tvA~~g~G~~  153 (653)
T COG0370          81 KPDLIVNVVDATNLERNLYLTL---QLLE---LGIPMILALNMIDEAKKRGIR-IDIEKLSKLLGVPVVPTVAKRGEGLE  153 (653)
T ss_pred             CCCEEEEEcccchHHHHHHHHH---HHHH---cCCCeEEEeccHhhHHhcCCc-ccHHHHHHHhCCCEEEEEeecCCCHH
Confidence            6799999999988654222221   2222   389999999999986544332 44566777799999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028251          158 EAFIKTAAKILQN  170 (211)
Q Consensus       158 ~~~~~i~~~~~~~  170 (211)
                      ++...+.+.....
T Consensus       154 ~l~~~i~~~~~~~  166 (653)
T COG0370         154 ELKRAIIELAESK  166 (653)
T ss_pred             HHHHHHHHhcccc
Confidence            9998887654333

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.71  E-value=4.6e-16  Score=120.08  Aligned_cols=159  Identities=21%  Similarity=0.184  Sum_probs=112.2

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcc-----c----hhhchHHH
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE-----S----FRSITRSY   75 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~-----~----~~~~~~~~   75 (211)
                      ....|+|.|.|+||||||++.+...+.....+|+++-...+.++  +....+++++||||.-     +    -.....++
T Consensus       167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhf--e~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL  244 (346)
T COG1084         167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHF--ERGYLRIQVIDTPGLLDRPLEERNEIERQAILAL  244 (346)
T ss_pred             CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeee--ecCCceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence            46789999999999999999999988877777776666665544  4444568899999921     1    11122233


Q ss_pred             hccccEEEEEEECCCH--HHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCc-EEEEeCCC
Q 028251           76 YRGAAGALLVYDITRR--ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL-FLEASART  152 (211)
Q Consensus        76 ~~~~d~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~  152 (211)
                      -+-.++++|+||++..  .+.+.-..++..+....  +.|+++|.||.|..+...  .++........+.. ...+++..
T Consensus       245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f--~~p~v~V~nK~D~~~~e~--~~~~~~~~~~~~~~~~~~~~~~~  320 (346)
T COG1084         245 RHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF--KAPIVVVINKIDIADEEK--LEEIEASVLEEGGEEPLKISATK  320 (346)
T ss_pred             HHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc--CCCeEEEEecccccchhH--HHHHHHHHHhhccccccceeeee
Confidence            3456789999999874  34455556777777776  589999999999865332  34444444444443 77888888


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 028251          153 AQNVEEAFIKTAAKILQ  169 (211)
Q Consensus       153 ~~~i~~~~~~i~~~~~~  169 (211)
                      +.+++.+-..+.....+
T Consensus       321 ~~~~d~~~~~v~~~a~~  337 (346)
T COG1084         321 GCGLDKLREEVRKTALE  337 (346)
T ss_pred             hhhHHHHHHHHHHHhhc
Confidence            88888887777666443

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.71  E-value=2.8e-16  Score=119.02  Aligned_cols=153  Identities=18%  Similarity=0.158  Sum_probs=95.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCC------------eeeEEEEEE--E----------------------EEC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT------------IGVEFGARM--V----------------------TID   51 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~------------~~~~~~~~~--~----------------------~~~   51 (211)
                      ||+++|+.++|||||+++|..+.+.......            .|.+.....  +                      .+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            6899999999999999999976654321111            011110000  0                      011


Q ss_pred             CEEEEEEEEeCCCccchhhchHHHhc--cccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC
Q 028251           52 GRPIKLQIWDTAGQESFRSITRSYYR--GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV  129 (211)
Q Consensus        52 ~~~~~l~l~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~  129 (211)
                      .....+.+.|+||++.+.......+.  .+|++++|+|+..... .....++..+..   .+.|+++++||+|+.+....
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~---~~ip~ivvvNK~D~~~~~~~  156 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALA---LNIPVFVVVTKIDLAPANIL  156 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEECccccCHHHH
Confidence            12346889999999988765555553  6899999999877543 222233333333   27899999999998543221


Q ss_pred             C--HHHHHHHHH--------------------------HcCCcEEEEeCCCCCCHHHHHHHHH
Q 028251          130 S--KEEGEQFAK--------------------------ENGLLFLEASARTAQNVEEAFIKTA  164 (211)
Q Consensus       130 ~--~~~~~~~~~--------------------------~~~~~~~~~s~~~~~~i~~~~~~i~  164 (211)
                      .  .++......                          ...++++.+|+.+|.|++++...|.
T Consensus       157 ~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~  219 (224)
T cd04165         157 QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN  219 (224)
T ss_pred             HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence            1  112222221                          0124799999999999999876654

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.71  E-value=3.3e-16  Score=119.53  Aligned_cols=159  Identities=21%  Similarity=0.194  Sum_probs=107.4

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc------------hhhch
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES------------FRSIT   72 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~------------~~~~~   72 (211)
                      +.++|+|+|.|++|||||.|.+.+.+..+......+++....-+ +.....++.|+||||.-.            +....
T Consensus        71 k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi-~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~  149 (379)
T KOG1423|consen   71 KSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGI-ITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNP  149 (379)
T ss_pred             eEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEE-EecCceEEEEecCCcccccchhhhHHHHHHhhhCH
Confidence            67899999999999999999999999988777665555555444 333456789999999321            11134


Q ss_pred             HHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCC-------------CC---HHHHHH
Q 028251           73 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA-------------VS---KEEGEQ  136 (211)
Q Consensus        73 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-------------~~---~~~~~~  136 (211)
                      ...+..+|.+++|+|+++....... ..+..+..+.  +.|-+++.||.|....+.             +.   .+-.++
T Consensus       150 ~~a~q~AD~vvVv~Das~tr~~l~p-~vl~~l~~ys--~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~  226 (379)
T KOG1423|consen  150 RDAAQNADCVVVVVDASATRTPLHP-RVLHMLEEYS--KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEK  226 (379)
T ss_pred             HHHHhhCCEEEEEEeccCCcCccCh-HHHHHHHHHh--cCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHH
Confidence            4567789999999999973322211 2333444444  789999999999743321             11   111111


Q ss_pred             HHHH---------cCC----cEEEEeCCCCCCHHHHHHHHHHHH
Q 028251          137 FAKE---------NGL----LFLEASARTAQNVEEAFIKTAAKI  167 (211)
Q Consensus       137 ~~~~---------~~~----~~~~~s~~~~~~i~~~~~~i~~~~  167 (211)
                      +...         .+.    .+|.+||+.|+|++++-++|+...
T Consensus       227 f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa  270 (379)
T KOG1423|consen  227 FTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQA  270 (379)
T ss_pred             hccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcC
Confidence            1111         112    289999999999999988776544

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.71  E-value=2.9e-16  Score=128.64  Aligned_cols=147  Identities=18%  Similarity=0.158  Sum_probs=98.3

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCC------C------C--CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchh
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRF------Q------P--VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR   69 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~------~------~--~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~   69 (211)
                      ...++|+++|+.++|||||+++|++...      .      .  ......|.+.....+.++..+..+.||||||++.|.
T Consensus        10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~   89 (394)
T TIGR00485        10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV   89 (394)
T ss_pred             CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHH
Confidence            4678999999999999999999974310      0      0  011123555555556666666778999999999888


Q ss_pred             hchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEE-EEEecCCCCCCCCCC---HHHHHHHHHHcC---
Q 028251           70 SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIM-LVGNKCDLAHRRAVS---KEEGEQFAKENG---  142 (211)
Q Consensus        70 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~~---~~~~~~~~~~~~---  142 (211)
                      .........+|++++|+|+.+..... ....+..+...   +.|.+ +++||+|+.+.....   .++...++...+   
T Consensus        90 ~~~~~~~~~~D~~ilVvda~~g~~~q-t~e~l~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~  165 (394)
T TIGR00485        90 KNMITGAAQMDGAILVVSATDGPMPQ-TREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPG  165 (394)
T ss_pred             HHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence            76766778899999999998742212 12222333322   66755 689999986532211   124555555544   


Q ss_pred             --CcEEEEeCCCCC
Q 028251          143 --LLFLEASARTAQ  154 (211)
Q Consensus       143 --~~~~~~s~~~~~  154 (211)
                        ++++++|+.++.
T Consensus       166 ~~~~ii~vSa~~g~  179 (394)
T TIGR00485       166 DDTPIIRGSALKAL  179 (394)
T ss_pred             cCccEEECcccccc
Confidence              689999999874

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK12735 elongation factor Tu; Reviewed

Probab=99.71  E-value=4.3e-16  Score=127.55  Aligned_cols=147  Identities=17%  Similarity=0.159  Sum_probs=97.7

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhC-------CCC-----C--CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDK-------RFQ-----P--VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS   70 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~-------~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~   70 (211)
                      ..++|+++|+.++|||||+++|++.       .+.     .  ......|.+.......+.....++.|+||||++.|..
T Consensus        11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~~   90 (396)
T PRK12735         11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYVK   90 (396)
T ss_pred             CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHHH
Confidence            5789999999999999999999862       100     0  0111235555555555655566789999999988877


Q ss_pred             chHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEE-EEEecCCCCCCCCCC---HHHHHHHHHHc-----
Q 028251           71 ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIM-LVGNKCDLAHRRAVS---KEEGEQFAKEN-----  141 (211)
Q Consensus        71 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~~---~~~~~~~~~~~-----  141 (211)
                      .....+..+|++++|+|+.+.... .....+..+..   .+.|.+ +++||+|+.+..+..   .+++..+....     
T Consensus        91 ~~~~~~~~aD~~llVvda~~g~~~-qt~e~l~~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~~  166 (396)
T PRK12735         91 NMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGD  166 (396)
T ss_pred             HHHhhhccCCEEEEEEECCCCCch-hHHHHHHHHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCcC
Confidence            777778899999999999874321 12223333332   267765 579999996422211   12344455443     


Q ss_pred             CCcEEEEeCCCCCC
Q 028251          142 GLLFLEASARTAQN  155 (211)
Q Consensus       142 ~~~~~~~s~~~~~~  155 (211)
                      +++++++|+.++.+
T Consensus       167 ~~~ii~~Sa~~g~n  180 (396)
T PRK12735        167 DTPIIRGSALKALE  180 (396)
T ss_pred             ceeEEecchhcccc
Confidence            36799999999853

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.69  E-value=1.7e-16  Score=130.10  Aligned_cols=162  Identities=25%  Similarity=0.330  Sum_probs=120.1

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ..++|+++|+.|+||||||-.|+...+.+..++-.. .+.+- ..+.-..+...++|++..+.-.......++.+|++.+
T Consensus         8 kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~-~i~IP-advtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l   85 (625)
T KOG1707|consen    8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLP-RILIP-ADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL   85 (625)
T ss_pred             cceEEEEECCCCccHHHHHHHHHhhhccccccccCC-ccccC-CccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence            578999999999999999999999988776544211 11100 2222233447899998776656666778899999999


Q ss_pred             EEECCCHHHHHHHH-HHHHHHHHhcC--CCCeEEEEEecCCCCCCCCCCHHH-HHHHHHHcC-C-cEEEEeCCCCCCHHH
Q 028251           85 VYDITRRETFNHLS-SWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEE-GEQFAKENG-L-LFLEASARTAQNVEE  158 (211)
Q Consensus        85 v~d~~~~~~~~~~~-~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~~~~-~-~~~~~s~~~~~~i~~  158 (211)
                      ||+.+++++++.+. .|+..+++...  .++|+|+|+||.|..+....+.+. ...+..... + ..++|||++-.++.+
T Consensus        86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~~e  165 (625)
T KOG1707|consen   86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANVSE  165 (625)
T ss_pred             EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhhHh
Confidence            99999999999997 47777776653  789999999999998766554343 333333322 2 389999999999999


Q ss_pred             HHHHHHHHHH
Q 028251          159 AFIKTAAKIL  168 (211)
Q Consensus       159 ~~~~i~~~~~  168 (211)
                      +|....++++
T Consensus       166 ~fYyaqKaVi  175 (625)
T KOG1707|consen  166 LFYYAQKAVI  175 (625)
T ss_pred             hhhhhhheee
Confidence            9988776654

>CHL00071 tufA elongation factor Tu

Probab=99.69  E-value=1.2e-15  Score=125.54  Aligned_cols=149  Identities=16%  Similarity=0.118  Sum_probs=100.3

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCC--------------CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchh
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQP--------------VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR   69 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~   69 (211)
                      ...++|+++|++++|||||+++|++.....              ......|.+.......+.....++.|.||||+..+.
T Consensus        10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~   89 (409)
T CHL00071         10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV   89 (409)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHHH
Confidence            357899999999999999999999642210              011123555555555565556678899999998888


Q ss_pred             hchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEecCCCCCCCCCC---HHHHHHHHHHcC---
Q 028251           70 SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAVS---KEEGEQFAKENG---  142 (211)
Q Consensus        70 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~---  142 (211)
                      ......+..+|++++|+|+..... ......+..+...   +.| +++++||+|+.+..+..   .+++..+....+   
T Consensus        90 ~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~~---g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~  165 (409)
T CHL00071         90 KNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQV---GVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPG  165 (409)
T ss_pred             HHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence            877788889999999999986432 2222233333322   677 77889999996532211   123444444433   


Q ss_pred             --CcEEEEeCCCCCCH
Q 028251          143 --LLFLEASARTAQNV  156 (211)
Q Consensus       143 --~~~~~~s~~~~~~i  156 (211)
                        ++++++|+.+|.++
T Consensus       166 ~~~~ii~~Sa~~g~n~  181 (409)
T CHL00071        166 DDIPIVSGSALLALEA  181 (409)
T ss_pred             CcceEEEcchhhcccc
Confidence              67999999998743

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.69  E-value=5.8e-16  Score=116.85  Aligned_cols=113  Identities=20%  Similarity=0.201  Sum_probs=78.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCCCCCCC--------------CCeeeEEEE--EEEEEC--------CEEEEEEEEeCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHD--------------LTIGVEFGA--RMVTID--------GRPIKLQIWDTA   63 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~--------------~~~~~~~~~--~~~~~~--------~~~~~l~l~D~~   63 (211)
                      +|+++|+.++|||||+.+|+.........              ...+.+...  ....++        +....+.+||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            68999999999999999998543211100              011222221  122233        347789999999


Q ss_pred             CccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCC
Q 028251           64 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA  124 (211)
Q Consensus        64 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  124 (211)
                      |+..+......++..+|++|+|+|+.+.........+ .....   .+.|+++++||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l-~~~~~---~~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVL-RQALK---ERVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHH-HHHHH---cCCCEEEEEECCCcc
Confidence            9999999999999999999999999986544332222 22222   368999999999975

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.69  E-value=1.5e-16  Score=124.12  Aligned_cols=115  Identities=21%  Similarity=0.236  Sum_probs=78.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCCCCCCCC-----C-----------eeeEEEEEEEEECCEEEEEEEEeCCCccchhhc
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-----T-----------IGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI   71 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~   71 (211)
                      +|+++|++|+|||||+++|+..........     +           .+.+.......+......+.+|||||...+...
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~   80 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE   80 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence            589999999999999999985432211100     0           012222222233333467889999999888888


Q ss_pred             hHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCC
Q 028251           72 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR  126 (211)
Q Consensus        72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  126 (211)
                      +..++..+|++++|+|+++.........| ..+..   .+.|.++++||+|+...
T Consensus        81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~---~~~p~iivvNK~D~~~~  131 (268)
T cd04170          81 TRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE---AGIPRIIFINKMDRERA  131 (268)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEECCccCCC
Confidence            88899999999999999886544332222 23322   37899999999998653

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.69  E-value=3.3e-16  Score=121.68  Aligned_cols=114  Identities=18%  Similarity=0.133  Sum_probs=80.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCCCCC----------------CCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhc
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRFQPV----------------HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI   71 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~   71 (211)
                      +|+++|++++|||||+++|+.......                .....+.+.......+.....++.+|||||+..+...
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~   80 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE   80 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence            589999999999999999974221110                0112244444444444445677899999999888888


Q ss_pred             hHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCC
Q 028251           72 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH  125 (211)
Q Consensus        72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  125 (211)
                      +...++.+|++|+|+|+.+...-. ....+..+..   .+.|+++++||+|+.+
T Consensus        81 ~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~~---~~~p~ivviNK~D~~~  130 (270)
T cd01886          81 VERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQADR---YNVPRIAFVNKMDRTG  130 (270)
T ss_pred             HHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHHH---cCCCEEEEEECCCCCC
Confidence            899999999999999998753222 2233333332   3789999999999864

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>cd01850 CDC_Septin CDC/Septin

Probab=99.68  E-value=6.4e-16  Score=120.54  Aligned_cols=143  Identities=17%  Similarity=0.260  Sum_probs=92.2

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCC----------CCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh----
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV----------HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS----   70 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~----   70 (211)
                      ..++|+|+|.+|+|||||+|+|++..+...          ..++.+.+.....+..++..+.+.+|||||......    
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~   82 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC   82 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence            468999999999999999999998876543          233444555555566678888999999999432211    


Q ss_pred             ----------------------chHHHhc--cccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCC
Q 028251           71 ----------------------ITRSYYR--GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR  126 (211)
Q Consensus        71 ----------------------~~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  126 (211)
                                            .....+.  .+|+++++++..... +....  +..+..... +.|+++|+||+|+...
T Consensus        83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D--~~~lk~l~~-~v~vi~VinK~D~l~~  158 (276)
T cd01850          83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLD--IEFMKRLSK-RVNIIPVIAKADTLTP  158 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHH--HHHHHHHhc-cCCEEEEEECCCcCCH
Confidence                                  0101222  366778888766421 11110  222333332 6899999999998542


Q ss_pred             CC--CCHHHHHHHHHHcCCcEEEEeCC
Q 028251          127 RA--VSKEEGEQFAKENGLLFLEASAR  151 (211)
Q Consensus       127 ~~--~~~~~~~~~~~~~~~~~~~~s~~  151 (211)
                      .+  ...+.+.+.+..++++++.....
T Consensus       159 ~e~~~~k~~i~~~l~~~~i~~~~~~~~  185 (276)
T cd01850         159 EELKEFKQRIMEDIEEHNIKIYKFPED  185 (276)
T ss_pred             HHHHHHHHHHHHHHHHcCCceECCCCC
Confidence            22  23445666777789998877653

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.68  E-value=2.2e-15  Score=126.80  Aligned_cols=116  Identities=20%  Similarity=0.182  Sum_probs=82.1

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCC--------------------CCCCeeeEEEEEEEEECCEEEEEEEEeCCC
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV--------------------HDLTIGVEFGARMVTIDGRPIKLQIWDTAG   64 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G   64 (211)
                      ..-+|+|+|+.++|||||+++|+.......                    .....+.++......++.....+.+|||||
T Consensus         9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG   88 (526)
T PRK00741          9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG   88 (526)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence            456999999999999999999974211100                    001124444444455555567899999999


Q ss_pred             ccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCC
Q 028251           65 QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA  124 (211)
Q Consensus        65 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  124 (211)
                      +..+......++..+|++|+|+|+.+.... ....++.....   .+.|+++++||+|+.
T Consensus        89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---~~iPiiv~iNK~D~~  144 (526)
T PRK00741         89 HEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL---RDTPIFTFINKLDRD  144 (526)
T ss_pred             chhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh---cCCCEEEEEECCccc
Confidence            998888778889999999999999875322 23333333322   489999999999974

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.67  E-value=1.1e-15  Score=125.41  Aligned_cols=150  Identities=20%  Similarity=0.173  Sum_probs=96.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCC-------------------------------CCCeeeEEEEEEEEECCEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVH-------------------------------DLTIGVEFGARMVTIDGRPI   55 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~   55 (211)
                      ++|+++|+.++|||||+.+|+...-....                               ....+.+.......+.....
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            58999999999999999999743211100                               00113334444444444556


Q ss_pred             EEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCH----
Q 028251           56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK----  131 (211)
Q Consensus        56 ~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~----  131 (211)
                      ++.||||||++.|.......+..+|++|+|+|+.....-+.. ..+..+....  ..++++++||+|+.+......    
T Consensus        81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~-~~~~~~~~~~--~~~iivviNK~D~~~~~~~~~~~i~  157 (406)
T TIGR02034        81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTR-RHSYIASLLG--IRHVVLAVNKMDLVDYDEEVFENIK  157 (406)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccH-HHHHHHHHcC--CCcEEEEEEecccccchHHHHHHHH
Confidence            789999999998887777788999999999999765322111 1122222221  346889999999864322111    


Q ss_pred             HHHHHHHHHcC---CcEEEEeCCCCCCHHHH
Q 028251          132 EEGEQFAKENG---LLFLEASARTAQNVEEA  159 (211)
Q Consensus       132 ~~~~~~~~~~~---~~~~~~s~~~~~~i~~~  159 (211)
                      ++...+....+   ++++++||++|.|+++.
T Consensus       158 ~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~  188 (406)
T TIGR02034       158 KDYLAFAEQLGFRDVTFIPLSALKGDNVVSR  188 (406)
T ss_pred             HHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence            22223333333   46999999999998863

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.67  E-value=1.6e-15  Score=123.63  Aligned_cols=162  Identities=22%  Similarity=0.242  Sum_probs=118.6

Q ss_pred             CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCC-------------CCCCeeeEEEEEEEEE---CCEEEEEEEEeCCCc
Q 028251            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-------------HDLTIGVEFGARMVTI---DGRPIKLQIWDTAGQ   65 (211)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~-------------~~~~~~~~~~~~~~~~---~~~~~~l~l~D~~G~   65 (211)
                      +.++.-++.|+-+-.-|||||..+|+.......             ...-.|+++...+..+   ++..+.++++||||+
T Consensus        56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH  135 (650)
T KOG0462|consen   56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH  135 (650)
T ss_pred             chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc
Confidence            345667899999999999999999985432111             1112255555555443   456689999999999


Q ss_pred             cchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCC-HHHHHHHHHHcCCc
Q 028251           66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS-KEEGEQFAKENGLL  144 (211)
Q Consensus        66 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~  144 (211)
                      -.|.......+..+|++|+|+|+++....+.+..++..+.    .+..+|.|+||+|++..+.-. ..+........+.+
T Consensus       136 vDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe----~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~  211 (650)
T KOG0462|consen  136 VDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE----AGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAE  211 (650)
T ss_pred             ccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH----cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccc
Confidence            9999999999999999999999999766555555554444    378899999999997644211 22344444445667


Q ss_pred             EEEEeCCCCCCHHHHHHHHHHHH
Q 028251          145 FLEASARTAQNVEEAFIKTAAKI  167 (211)
Q Consensus       145 ~~~~s~~~~~~i~~~~~~i~~~~  167 (211)
                      ++.+||++|.++.++++.|++.+
T Consensus       212 ~i~vSAK~G~~v~~lL~AII~rV  234 (650)
T KOG0462|consen  212 VIYVSAKTGLNVEELLEAIIRRV  234 (650)
T ss_pred             eEEEEeccCccHHHHHHHHHhhC
Confidence            99999999999999877776655

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.67  E-value=9.3e-15  Score=119.53  Aligned_cols=178  Identities=19%  Similarity=0.171  Sum_probs=122.2

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECC-EEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDG-RPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ..+-|.++|+..-|||||+..+-..........-.+..+....+..+. ..-.+.|.||||++.|..++..=..-+|.+|
T Consensus         4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI   83 (509)
T COG0532           4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI   83 (509)
T ss_pred             CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence            456799999999999999999998777665555445555555555441 2335789999999999999888888999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC---------CcEEEEeCCCCC
Q 028251           84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG---------LLFLEASARTAQ  154 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~~~~~s~~~~~  154 (211)
                      +|++++|.--    .+..+.+......+.|++|++||+|.++..   ......-..+++         ..++++||++|.
T Consensus        84 LVVa~dDGv~----pQTiEAI~hak~a~vP~iVAiNKiDk~~~n---p~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~  156 (509)
T COG0532          84 LVVAADDGVM----PQTIEAINHAKAAGVPIVVAINKIDKPEAN---PDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGE  156 (509)
T ss_pred             EEEEccCCcc----hhHHHHHHHHHHCCCCEEEEEecccCCCCC---HHHHHHHHHHcCCCHhhcCCceEEEEeeccCCC
Confidence            9999998432    223334444455699999999999997432   222222222222         348999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhhccccccCCCCCeEEeecc
Q 028251          155 NVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGR  191 (211)
Q Consensus       155 ~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (211)
                      |++++++.+.-.....  +-.......-.+..+..+-
T Consensus       157 Gi~eLL~~ill~aev~--elka~~~~~a~gtviE~~~  191 (509)
T COG0532         157 GIDELLELILLLAEVL--ELKANPEGPARGTVIEVKL  191 (509)
T ss_pred             CHHHHHHHHHHHHHHH--hhhcCCCCcceEEEEEEEe
Confidence            9999998765433332  3333344444454444333

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.66  E-value=1.6e-15  Score=126.51  Aligned_cols=154  Identities=19%  Similarity=0.140  Sum_probs=98.5

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCC------------C-------------------CCeeeEEEEEEEEECC
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH------------D-------------------LTIGVEFGARMVTIDG   52 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~------------~-------------------~~~~~~~~~~~~~~~~   52 (211)
                      ...++|+++|+.++|||||+.+|+...-....            .                   ...|.+.......+..
T Consensus        25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~  104 (474)
T PRK05124         25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST  104 (474)
T ss_pred             cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence            45689999999999999999999854321110            0                   0113333444344555


Q ss_pred             EEEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHH
Q 028251           53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE  132 (211)
Q Consensus        53 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~  132 (211)
                      ...++.||||||++.+.......+..+|++++|+|+.....-.....+ ..+....  ..|+++++||+|+.+......+
T Consensus       105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~-~l~~~lg--~~~iIvvvNKiD~~~~~~~~~~  181 (474)
T PRK05124        105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS-FIATLLG--IKHLVVAVNKMDLVDYSEEVFE  181 (474)
T ss_pred             CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH-HHHHHhC--CCceEEEEEeeccccchhHHHH
Confidence            556789999999988876666667999999999999764321111111 1122221  3578999999998643221122


Q ss_pred             HH----HHHHHHc----CCcEEEEeCCCCCCHHHHH
Q 028251          133 EG----EQFAKEN----GLLFLEASARTAQNVEEAF  160 (211)
Q Consensus       133 ~~----~~~~~~~----~~~~~~~s~~~~~~i~~~~  160 (211)
                      +.    ..+....    ..+++++|+++|.|+++.-
T Consensus       182 ~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~  217 (474)
T PRK05124        182 RIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS  217 (474)
T ss_pred             HHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence            22    2222222    3679999999999998753

>PRK13351 elongation factor G; Reviewed

Probab=99.66  E-value=3.1e-15  Score=130.55  Aligned_cols=119  Identities=17%  Similarity=0.166  Sum_probs=84.4

Q ss_pred             CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCC-------------CC---CCeeeEEEEEEEEECCEEEEEEEEeCCCcc
Q 028251            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-------------HD---LTIGVEFGARMVTIDGRPIKLQIWDTAGQE   66 (211)
Q Consensus         3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~-------------~~---~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~   66 (211)
                      .+...+|+|+|+.++|||||+++|+.......             ..   ...+.+.......+......+.+|||||+.
T Consensus         5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~   84 (687)
T PRK13351          5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHI   84 (687)
T ss_pred             cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcH
Confidence            34567999999999999999999985321100             00   011233333333444456788999999999


Q ss_pred             chhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCC
Q 028251           67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH  125 (211)
Q Consensus        67 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  125 (211)
                      .+...+..+++.+|++|+|+|+++.........| ..+..   .+.|+++++||+|+..
T Consensus        85 df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~  139 (687)
T PRK13351         85 DFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVG  139 (687)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCC
Confidence            9988899999999999999999887655544333 33332   3789999999999853

>PLN03126 Elongation factor Tu; Provisional

Probab=99.65  E-value=5.3e-15  Score=123.05  Aligned_cols=147  Identities=16%  Similarity=0.102  Sum_probs=99.1

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCC------CC--------CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRF------QP--------VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS   70 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~------~~--------~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~   70 (211)
                      ..++|+++|+.++|||||+++|+....      ..        ......+.+.......++.....+.|+|+||++.|..
T Consensus        80 ~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~~  159 (478)
T PLN03126         80 PHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVK  159 (478)
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHHH
Confidence            468999999999999999999985211      11        1112235555554455554556789999999999988


Q ss_pred             chHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEecCCCCCCCCCC---HHHHHHHHHHc-----
Q 028251           71 ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAVS---KEEGEQFAKEN-----  141 (211)
Q Consensus        71 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~-----  141 (211)
                      .....+..+|++++|+|+.+....+ ...++..+...   ++| +++++||+|+.+..+..   .+++..+....     
T Consensus       160 ~~~~g~~~aD~ailVVda~~G~~~q-t~e~~~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~~  235 (478)
T PLN03126        160 NMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQV---GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGD  235 (478)
T ss_pred             HHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCcC
Confidence            8888888999999999998753322 23333333332   677 77899999986532211   12334444443     


Q ss_pred             CCcEEEEeCCCCCC
Q 028251          142 GLLFLEASARTAQN  155 (211)
Q Consensus       142 ~~~~~~~s~~~~~~  155 (211)
                      +++++++|+.++.+
T Consensus       236 ~~~~vp~Sa~~g~n  249 (478)
T PLN03126        236 DIPIISGSALLALE  249 (478)
T ss_pred             cceEEEEEcccccc
Confidence            46799999998854

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.65  E-value=5e-15  Score=122.61  Aligned_cols=150  Identities=18%  Similarity=0.161  Sum_probs=104.3

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCC-----------------------------CCCCCeeeEEEEEEEEECCEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-----------------------------VHDLTIGVEFGARMVTIDGRPI   55 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~   55 (211)
                      ..++|+++|+.++|||||+-+|+......                             ......+.+.......+.....
T Consensus         6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~   85 (447)
T PLN00043          6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKY   85 (447)
T ss_pred             ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCE
Confidence            46889999999999999999987421100                             0111235566666666777777


Q ss_pred             EEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHH-------HHHHHHHHHHHhcCCCC-eEEEEEecCCCCCCC
Q 028251           56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFN-------HLSSWLEDARQHANPNM-SIMLVGNKCDLAHRR  127 (211)
Q Consensus        56 ~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~-------~~~~~~~~~~~~~~~~~-p~ivv~nK~Dl~~~~  127 (211)
                      .+.++|+||++.|.......+..+|++|+|+|+.+. .++       .....+.....   .+. +++|++||+|+.+..
T Consensus        86 ~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~---~gi~~iIV~vNKmD~~~~~  161 (447)
T PLN00043         86 YCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT---LGVKQMICCCNKMDATTPK  161 (447)
T ss_pred             EEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH---cCCCcEEEEEEcccCCchh
Confidence            899999999999999999999999999999999873 121       22222222222   256 478889999985211


Q ss_pred             --C----CCHHHHHHHHHHcC-----CcEEEEeCCCCCCHHH
Q 028251          128 --A----VSKEEGEQFAKENG-----LLFLEASARTAQNVEE  158 (211)
Q Consensus       128 --~----~~~~~~~~~~~~~~-----~~~~~~s~~~~~~i~~  158 (211)
                        .    ...+++..++...+     ++++++|+++|+|+.+
T Consensus       162 ~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        162 YSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             hhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence              0    11345566666655     5699999999999864

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.65  E-value=1.4e-14  Score=111.71  Aligned_cols=154  Identities=23%  Similarity=0.166  Sum_probs=110.3

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccch-------hhchHHHhc
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF-------RSITRSYYR   77 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~-------~~~~~~~~~   77 (211)
                      -..+++++|+|++|||||++.|++........++++.+.....+.+++  .++++.|+||.-.-       ........+
T Consensus        62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R  139 (365)
T COG1163          62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVAR  139 (365)
T ss_pred             CCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeec
Confidence            346899999999999999999999888777777767777776666665  45789999983221       234566789


Q ss_pred             cccEEEEEEECCCHHH-HHHHHHHHH-----------------------------------------HHHHh--------
Q 028251           78 GAAGALLVYDITRRET-FNHLSSWLE-----------------------------------------DARQH--------  107 (211)
Q Consensus        78 ~~d~~i~v~d~~~~~~-~~~~~~~~~-----------------------------------------~~~~~--------  107 (211)
                      ++|++|+|+|+..... .+.+...+.                                         .+.++        
T Consensus       140 ~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~  219 (365)
T COG1163         140 NADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVL  219 (365)
T ss_pred             cCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEE
Confidence            9999999999986543 333333222                                         00000        


Q ss_pred             ----------------cCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 028251          108 ----------------ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI  167 (211)
Q Consensus       108 ----------------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~  167 (211)
                                      ...-+|.+++.||.|+..     .++...+.+..  ..+++||..+.|++++.+.|.+.+
T Consensus       220 Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L  288 (365)
T COG1163         220 IREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVL  288 (365)
T ss_pred             EecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhh
Confidence                            011479999999999854     34455554434  789999999999999988777665

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.65  E-value=6.2e-15  Score=109.80  Aligned_cols=159  Identities=17%  Similarity=0.161  Sum_probs=96.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCC--CCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh--------c---hH
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHD--LTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS--------I---TR   73 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~--------~---~~   73 (211)
                      ++|+++|.+|+|||||+|+|++........  +..+.........+++  ..+.++||||......        +   ..
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~   78 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS   78 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence            479999999999999999999886544332  2223333333334444  4688999999543321        1   11


Q ss_pred             HHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEecCCCCCCCCC------CHHHHHHHHHHcCCcE
Q 028251           74 SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAV------SKEEGEQFAKENGLLF  145 (211)
Q Consensus        74 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~------~~~~~~~~~~~~~~~~  145 (211)
                      ......|++|+|+++.+ .+.. ....+..+.....  .-.++++++|+.|......+      ...........++..+
T Consensus        79 ~~~~g~~~illVi~~~~-~t~~-d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~  156 (196)
T cd01852          79 LSAPGPHAFLLVVPLGR-FTEE-EEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY  156 (196)
T ss_pred             hcCCCCEEEEEEEECCC-cCHH-HHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence            22367899999999877 2221 2233444444332  12578888999986543211      1133455555666666


Q ss_pred             EEEeCC-----CCCCHHHHHHHHHHHHHH
Q 028251          146 LEASAR-----TAQNVEEAFIKTAAKILQ  169 (211)
Q Consensus       146 ~~~s~~-----~~~~i~~~~~~i~~~~~~  169 (211)
                      +..+.+     .+.++.++++.|.+.+.+
T Consensus       157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~  185 (196)
T cd01852         157 VAFNNKAKGEEQEQQVKELLAKVESMVKE  185 (196)
T ss_pred             EEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence            655543     456777777777666654

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.65  E-value=2.3e-15  Score=113.71  Aligned_cols=159  Identities=20%  Similarity=0.279  Sum_probs=107.4

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEE-EECCEEEEEEEEeCCCccc-------hhhchHHHh
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMV-TIDGRPIKLQIWDTAGQES-------FRSITRSYY   76 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~l~D~~G~~~-------~~~~~~~~~   76 (211)
                      .+++|+++|..|+|||||+|+|+.+...+...-..+.+.....+ .+++  -.+.|||+||.+.       +.++...++
T Consensus        38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d~l  115 (296)
T COG3596          38 EPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRDYL  115 (296)
T ss_pred             CceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHHHh
Confidence            56899999999999999999999766555443333333333222 2333  3478999999554       777888999


Q ss_pred             ccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCC-------CCCCHHHHHH-----------HH
Q 028251           77 RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR-------RAVSKEEGEQ-----------FA  138 (211)
Q Consensus        77 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-------~~~~~~~~~~-----------~~  138 (211)
                      ...|.++++++..|+.---... ++..+.... .+.++++++|.+|...+       ...+...+++           ++
T Consensus       116 ~~~DLvL~l~~~~draL~~d~~-f~~dVi~~~-~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~  193 (296)
T COG3596         116 PKLDLVLWLIKADDRALGTDED-FLRDVIILG-LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLF  193 (296)
T ss_pred             hhccEEEEeccCCCccccCCHH-HHHHHHHhc-cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999875333333 333333332 25899999999997433       1111111122           22


Q ss_pred             HHcCCcEEEEeCCCCCCHHHHHHHHHHHHH
Q 028251          139 KENGLLFLEASARTAQNVEEAFIKTAAKIL  168 (211)
Q Consensus       139 ~~~~~~~~~~s~~~~~~i~~~~~~i~~~~~  168 (211)
                      ++ -.|++.++.+.+.|++++...+++.+.
T Consensus       194 q~-V~pV~~~~~r~~wgl~~l~~ali~~lp  222 (296)
T COG3596         194 QE-VKPVVAVSGRLPWGLKELVRALITALP  222 (296)
T ss_pred             hh-cCCeEEeccccCccHHHHHHHHHHhCc
Confidence            11 236888889999999999998888775

>PRK00049 elongation factor Tu; Reviewed

Probab=99.65  E-value=8.5e-15  Score=119.91  Aligned_cols=146  Identities=17%  Similarity=0.163  Sum_probs=97.7

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCC---C-----------CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ---P-----------VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS   70 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~---~-----------~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~   70 (211)
                      ..++|+++|+.++|||||+++|++....   .           ......|.+.......+.....++.+.||||+..+..
T Consensus        11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~~   90 (396)
T PRK00049         11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYVK   90 (396)
T ss_pred             CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHHH
Confidence            6789999999999999999999863110   0           0111335555555566655566788999999988877


Q ss_pred             chHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEE-EEEecCCCCCCCCCC---HHHHHHHHHHc-----
Q 028251           71 ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIM-LVGNKCDLAHRRAVS---KEEGEQFAKEN-----  141 (211)
Q Consensus        71 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~~---~~~~~~~~~~~-----  141 (211)
                      .....+..+|++++|+|+.+... ......+..+...   +.|.+ +++||+|+.+.....   ..+...+....     
T Consensus        91 ~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~~---g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~  166 (396)
T PRK00049         91 NMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGD  166 (396)
T ss_pred             HHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHHc---CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCcc
Confidence            77777899999999999987532 2222333333332   67876 589999996422211   12333344332     


Q ss_pred             CCcEEEEeCCCCC
Q 028251          142 GLLFLEASARTAQ  154 (211)
Q Consensus       142 ~~~~~~~s~~~~~  154 (211)
                      +++++++|++++.
T Consensus       167 ~~~iv~iSa~~g~  179 (396)
T PRK00049        167 DTPIIRGSALKAL  179 (396)
T ss_pred             CCcEEEeeccccc
Confidence            3679999999875

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.64  E-value=6.6e-15  Score=114.23  Aligned_cols=164  Identities=17%  Similarity=0.128  Sum_probs=112.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh----chHHHh---ccc
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS----ITRSYY---RGA   79 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~----~~~~~~---~~~   79 (211)
                      .-|.+||.|++|||||++.+...+--...+++++.....-.+.++ ....+.+-|.||.-+-.+    +-..|+   ..+
T Consensus       160 ADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~-~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt  238 (369)
T COG0536         160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVD-GGESFVVADIPGLIEGASEGVGLGLRFLRHIERT  238 (369)
T ss_pred             cccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEec-CCCcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence            347899999999999999999887665555555655555555552 233577899999443222    333343   456


Q ss_pred             cEEEEEEECCCHH---HHHHHHHHHHHHHHhcC--CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCc-EEEEeCCCC
Q 028251           80 AGALLVYDITRRE---TFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL-FLEASARTA  153 (211)
Q Consensus        80 d~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~  153 (211)
                      .++++|+|++..+   ..++......++..+..  .++|.+||+||+|+....+...+....+.+..+.. ++.+|+.++
T Consensus       239 ~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~  318 (369)
T COG0536         239 RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTR  318 (369)
T ss_pred             heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcc
Confidence            7999999998644   35666666667666543  68999999999997544333223333444444443 222999999


Q ss_pred             CCHHHHHHHHHHHHHHHH
Q 028251          154 QNVEEAFIKTAAKILQNI  171 (211)
Q Consensus       154 ~~i~~~~~~i~~~~~~~~  171 (211)
                      .|++++...+.+.+.+..
T Consensus       319 ~g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         319 EGLDELLRALAELLEETK  336 (369)
T ss_pred             cCHHHHHHHHHHHHHHhh
Confidence            999999999888887775

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.64  E-value=9.7e-15  Score=115.62  Aligned_cols=81  Identities=20%  Similarity=0.225  Sum_probs=54.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEE---------------------ECC-EEEEEEEEeCCCc-
Q 028251            9 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVT---------------------IDG-RPIKLQIWDTAGQ-   65 (211)
Q Consensus         9 i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~-~~~~l~l~D~~G~-   65 (211)
                      |+++|.+++|||||+|+|++........+..+.+.......                     .++ ..+.+++||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            57999999999999999998875432223222222221111                     122 3367999999997 


Q ss_pred             ---cchhhchHH---HhccccEEEEEEECC
Q 028251           66 ---ESFRSITRS---YYRGAAGALLVYDIT   89 (211)
Q Consensus        66 ---~~~~~~~~~---~~~~~d~~i~v~d~~   89 (211)
                         +....+...   .++.+|++++|+|+.
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~  110 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS  110 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence               334444334   489999999999996

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.63  E-value=1.7e-14  Score=98.42  Aligned_cols=106  Identities=21%  Similarity=0.164  Sum_probs=69.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccch---------hhchHHHhc
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF---------RSITRSYYR   77 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~---------~~~~~~~~~   77 (211)
                      +|+|+|.+|+|||||+|+|++..... ...+..+.......+.+++..+  .++||||....         .......+.
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~--~~vDtpG~~~~~~~~~~~~~~~~~~~~~~   78 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKF--ILVDTPGINDGESQDNDGKEIRKFLEQIS   78 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEE--EEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeE--EEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence            68999999999999999999864322 2222223333334455666664  69999995321         112333448


Q ss_pred             cccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEec
Q 028251           78 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK  120 (211)
Q Consensus        78 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  120 (211)
                      .+|++++|+|..++.. .....++..+.    .+.|+++|+||
T Consensus        79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK  116 (116)
T PF01926_consen   79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK  116 (116)
T ss_dssp             TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred             HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence            9999999999877422 22333334442    48999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.62  E-value=1e-14  Score=120.79  Aligned_cols=151  Identities=19%  Similarity=0.141  Sum_probs=101.1

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCC--CC---------------------------CCCCCeeeEEEEEEEEECCEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRF--QP---------------------------VHDLTIGVEFGARMVTIDGRPI   55 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~~~   55 (211)
                      ..++|+++|+.++|||||+.+|+...-  ..                           ......+.+.......++....
T Consensus         6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~   85 (446)
T PTZ00141          6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY   85 (446)
T ss_pred             ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCe
Confidence            568999999999999999999975211  00                           0011225555555566666777


Q ss_pred             EEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCe-EEEEEecCCCCC--C
Q 028251           56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---F---NHLSSWLEDARQHANPNMS-IMLVGNKCDLAH--R  126 (211)
Q Consensus        56 ~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~--~  126 (211)
                      .+.|+|+||+.+|.......+..+|++|+|+|+.+..-   +   ......+..+...   ++| ++|++||+|...  .
T Consensus        86 ~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~---gi~~iiv~vNKmD~~~~~~  162 (446)
T PTZ00141         86 YFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL---GVKQMIVCINKMDDKTVNY  162 (446)
T ss_pred             EEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc---CCCeEEEEEEccccccchh
Confidence            89999999999998888888999999999999987420   0   1222222233322   655 678999999532  1


Q ss_pred             CCCC----HHHHHHHHHHc-----CCcEEEEeCCCCCCHHH
Q 028251          127 RAVS----KEEGEQFAKEN-----GLLFLEASARTAQNVEE  158 (211)
Q Consensus       127 ~~~~----~~~~~~~~~~~-----~~~~~~~s~~~~~~i~~  158 (211)
                      .+..    .+++..+....     +++++++|+.+|+|+.+
T Consensus       163 ~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        163 SQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             hHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence            1111    12333333332     35799999999999864

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.62  E-value=1.1e-14  Score=125.94  Aligned_cols=152  Identities=20%  Similarity=0.156  Sum_probs=96.6

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCC------------CC-------------------CeeeEEEEEEEEECC
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH------------DL-------------------TIGVEFGARMVTIDG   52 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~------------~~-------------------~~~~~~~~~~~~~~~   52 (211)
                      ...++|+++|++++|||||+++|+...-....            ..                   ..|.+.......+..
T Consensus        22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~  101 (632)
T PRK05506         22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT  101 (632)
T ss_pred             CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence            35689999999999999999999864321110            00                   012333333334444


Q ss_pred             EEEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHH
Q 028251           53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE  132 (211)
Q Consensus        53 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~  132 (211)
                      ...++.|+||||++.+.......+..+|++++|+|+.+...-+. ...+..+....  ..|++|++||+|+.+......+
T Consensus       102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t-~e~~~~~~~~~--~~~iivvvNK~D~~~~~~~~~~  178 (632)
T PRK05506        102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT-RRHSFIASLLG--IRHVVLAVNKMDLVDYDQEVFD  178 (632)
T ss_pred             CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccC-HHHHHHHHHhC--CCeEEEEEEecccccchhHHHH
Confidence            45567899999998887666667889999999999976532111 11122222221  3678899999998642211112


Q ss_pred             ----HHHHHHHHcC---CcEEEEeCCCCCCHHH
Q 028251          133 ----EGEQFAKENG---LLFLEASARTAQNVEE  158 (211)
Q Consensus       133 ----~~~~~~~~~~---~~~~~~s~~~~~~i~~  158 (211)
                          +...+....+   .+++++||++|.|+.+
T Consensus       179 ~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        179 EIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence                2223333444   4599999999999885

>PLN03127 Elongation factor Tu; Provisional

Probab=99.62  E-value=2.3e-14  Score=118.56  Aligned_cols=143  Identities=15%  Similarity=0.115  Sum_probs=92.4

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhC------CCC----C----CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDK------RFQ----P----VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS   70 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~------~~~----~----~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~   70 (211)
                      ..++|+++|+.++|||||+++|.+.      ...    .    ......|.+.......++....++.|.||||+..+..
T Consensus        60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f~~  139 (447)
T PLN03127         60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADYVK  139 (447)
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccchHH
Confidence            5689999999999999999999732      100    0    0111235556666666666667889999999998877


Q ss_pred             chHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEecCCCCCCCCCCH---HHHHHHHHHc-----
Q 028251           71 ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAVSK---EEGEQFAKEN-----  141 (211)
Q Consensus        71 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~---~~~~~~~~~~-----  141 (211)
                      .....+..+|++++|+|+.+...-+ ....+..+..   .+.| +++++||+|+.+......   ++...+....     
T Consensus       140 ~~~~g~~~aD~allVVda~~g~~~q-t~e~l~~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~~  215 (447)
T PLN03127        140 NMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFPGD  215 (447)
T ss_pred             HHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            7777777899999999997753211 2222223322   2678 578899999964322111   1222333322     


Q ss_pred             CCcEEEEeCC
Q 028251          142 GLLFLEASAR  151 (211)
Q Consensus       142 ~~~~~~~s~~  151 (211)
                      .++++++|+.
T Consensus       216 ~vpiip~Sa~  225 (447)
T PLN03127        216 EIPIIRGSAL  225 (447)
T ss_pred             cceEEEeccc
Confidence            3578888876

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.61  E-value=1.6e-15  Score=109.89  Aligned_cols=116  Identities=21%  Similarity=0.333  Sum_probs=72.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEE-CCEEEEEEEEeCCCccchhhchHHH---hccccE
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTI-DGRPIKLQIWDTAGQESFRSITRSY---YRGAAG   81 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~l~D~~G~~~~~~~~~~~---~~~~d~   81 (211)
                      .-.|+++|+.|+|||+|+.+|..+...++.... .....   ..+ +.....+.++|+||+++.+......   ...+.+
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~~---~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~   78 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNIA---YNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG   78 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEEE---CCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCce---EEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence            457999999999999999999998655544333 22221   112 2233457899999999888754444   788999


Q ss_pred             EEEEEECCC-HHHHHHHHHHHHHHHHh---cCCCCeEEEEEecCCCCC
Q 028251           82 ALLVYDITR-RETFNHLSSWLEDARQH---ANPNMSIMLVGNKCDLAH  125 (211)
Q Consensus        82 ~i~v~d~~~-~~~~~~~~~~~~~~~~~---~~~~~p~ivv~nK~Dl~~  125 (211)
                      +|||+|.+. +.....+..++..+...   .....|++|+.||.|+..
T Consensus        79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~  126 (181)
T PF09439_consen   79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT  126 (181)
T ss_dssp             EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred             EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence            999999975 44455555544443222   236899999999999854

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.60  E-value=6.8e-14  Score=114.33  Aligned_cols=153  Identities=20%  Similarity=0.148  Sum_probs=112.7

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      .++-|-|+|+..-|||||+..|-..........-++..+..-.+.++. .-.+.|.||||+..|..++..-..-+|.+++
T Consensus       152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~-G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVL  230 (683)
T KOG1145|consen  152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPS-GKSITFLDTPGHAAFSAMRARGANVTDIVVL  230 (683)
T ss_pred             CCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCC-CCEEEEecCCcHHHHHHHHhccCccccEEEE
Confidence            567789999999999999999997776554444334444444455553 3568899999999999999888899999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-------cC--CcEEEEeCCCCCC
Q 028251           85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-------NG--LLFLEASARTAQN  155 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-------~~--~~~~~~s~~~~~~  155 (211)
                      |+.++|.--    .+..+.|......+.|++|++||+|.++..   .+...+-...       +|  +.++++||++|.|
T Consensus       231 VVAadDGVm----pQT~EaIkhAk~A~VpiVvAinKiDkp~a~---pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~n  303 (683)
T KOG1145|consen  231 VVAADDGVM----PQTLEAIKHAKSANVPIVVAINKIDKPGAN---PEKVKRELLSQGIVVEDLGGDVQVIPISALTGEN  303 (683)
T ss_pred             EEEccCCcc----HhHHHHHHHHHhcCCCEEEEEeccCCCCCC---HHHHHHHHHHcCccHHHcCCceeEEEeecccCCC
Confidence            999988532    233444555555699999999999987532   3333333333       23  3489999999999


Q ss_pred             HHHHHHHHHH
Q 028251          156 VEEAFIKTAA  165 (211)
Q Consensus       156 i~~~~~~i~~  165 (211)
                      ++.+-+.+.-
T Consensus       304 l~~L~eaill  313 (683)
T KOG1145|consen  304 LDLLEEAILL  313 (683)
T ss_pred             hHHHHHHHHH
Confidence            9998877553

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.59  E-value=2e-14  Score=118.91  Aligned_cols=162  Identities=15%  Similarity=0.142  Sum_probs=101.3

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCC-CCCeeeEEEEEEE-----------------EECC-------------
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-DLTIGVEFGARMV-----------------TIDG-------------   52 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~-----------------~~~~-------------   52 (211)
                      .-.++|.++|+...|||||+.+|.+....... ....|.+......                 .+..             
T Consensus        32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (460)
T PTZ00327         32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH  111 (460)
T ss_pred             CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence            45689999999999999999999964321100 0000111100000                 0000             


Q ss_pred             ---EEEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC
Q 028251           53 ---RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV  129 (211)
Q Consensus        53 ---~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~  129 (211)
                         ....+.|+|+||++.|.......+..+|++++|+|+.++.........+..+....  -.|++|++||+|+.+....
T Consensus       112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lg--i~~iIVvlNKiDlv~~~~~  189 (460)
T PTZ00327        112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMK--LKHIIILQNKIDLVKEAQA  189 (460)
T ss_pred             cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcC--CCcEEEEEecccccCHHHH
Confidence               02367899999999998887888889999999999987421111122222222221  3468999999998642211


Q ss_pred             --CHHHHHHHHHH---cCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 028251          130 --SKEEGEQFAKE---NGLLFLEASARTAQNVEEAFIKTAAKI  167 (211)
Q Consensus       130 --~~~~~~~~~~~---~~~~~~~~s~~~~~~i~~~~~~i~~~~  167 (211)
                        ..+++..+...   .+.+++++||++|.|++.+++.|.+.+
T Consensus       190 ~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l  232 (460)
T PTZ00327        190 QDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI  232 (460)
T ss_pred             HHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence              11223333322   356899999999999999888877644

>PRK12739 elongation factor G; Reviewed

Probab=99.59  E-value=4.6e-14  Score=123.07  Aligned_cols=118  Identities=18%  Similarity=0.131  Sum_probs=81.2

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCC-----CC-----------CCeeeEEEEEEEEECCEEEEEEEEeCCCccc
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-----HD-----------LTIGVEFGARMVTIDGRPIKLQIWDTAGQES   67 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~-----~~-----------~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~   67 (211)
                      +...+|+|+|+.++|||||+++|+.......     ..           ...+.+.......+.....++.++||||+..
T Consensus         6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~   85 (691)
T PRK12739          6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD   85 (691)
T ss_pred             cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence            4567999999999999999999975321100     00           1123333333333333456788999999988


Q ss_pred             hhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCC
Q 028251           68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH  125 (211)
Q Consensus        68 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  125 (211)
                      +...+...+..+|++|+|+|+.+....... ..+..+..   .+.|.++++||+|+..
T Consensus        86 f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~---~~~p~iv~iNK~D~~~  139 (691)
T PRK12739         86 FTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADK---YGVPRIVFVNKMDRIG  139 (691)
T ss_pred             HHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECCCCCC
Confidence            888888899999999999999876432222 23333332   3789999999999863

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.58  E-value=4.7e-14  Score=123.03  Aligned_cols=117  Identities=19%  Similarity=0.120  Sum_probs=82.0

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCC-----CCC-----------CCeeeEEEEEEEEECCEEEEEEEEeCCCccch
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-----VHD-----------LTIGVEFGARMVTIDGRPIKLQIWDTAGQESF   68 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~-----~~~-----------~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~   68 (211)
                      ..-+|+|+|+.++|||||+++|+......     ...           ...+.+.......+...+.++.+|||||+..+
T Consensus         9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~   88 (689)
T TIGR00484         9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF   88 (689)
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch
Confidence            34599999999999999999997432211     000           01233444333444444567899999999988


Q ss_pred             hhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCC
Q 028251           69 RSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH  125 (211)
Q Consensus        69 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  125 (211)
                      .......++.+|++|+|+|+.+....... .++..+..   .+.|+++++||+|+..
T Consensus        89 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~ivviNK~D~~~  141 (689)
T TIGR00484        89 TVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANR---YEVPRIAFVNKMDKTG  141 (689)
T ss_pred             hHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHH---cCCCEEEEEECCCCCC
Confidence            88888999999999999999885443332 23333332   3789999999999865

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>TIGR00503 prfC peptide chain release factor 3

Probab=99.58  E-value=4.7e-14  Score=118.82  Aligned_cols=118  Identities=19%  Similarity=0.187  Sum_probs=84.1

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCC--------------------CCCCeeeEEEEEEEEECCEEEEEEEEeCC
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV--------------------HDLTIGVEFGARMVTIDGRPIKLQIWDTA   63 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~l~l~D~~   63 (211)
                      ....+|+|+|+.++|||||+++|+.......                    .....+.++......++.....+.+||||
T Consensus         9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP   88 (527)
T TIGR00503         9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP   88 (527)
T ss_pred             ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence            3567999999999999999999863211110                    00122455555556666667889999999


Q ss_pred             CccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCC
Q 028251           64 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH  125 (211)
Q Consensus        64 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  125 (211)
                      |+..+.......+..+|++|+|+|+.+... .....++.....   .+.|+++++||+|+..
T Consensus        89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~~PiivviNKiD~~~  146 (527)
T TIGR00503        89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL---RDTPIFTFMNKLDRDI  146 (527)
T ss_pred             ChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh---cCCCEEEEEECccccC
Confidence            998888777778899999999999987421 223334433322   3789999999999853

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PRK09866 hypothetical protein; Provisional

Probab=99.57  E-value=3.2e-13  Score=113.42  Aligned_cols=108  Identities=16%  Similarity=0.156  Sum_probs=72.0

Q ss_pred             EEEEEeCCCccch-----hhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCC
Q 028251           56 KLQIWDTAGQESF-----RSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS  130 (211)
Q Consensus        56 ~l~l~D~~G~~~~-----~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~  130 (211)
                      ++.|+||||....     .......+..+|+++||+|.....+... ......+.... .+.|+++|+||+|+.+.....
T Consensus       231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~-K~~PVILVVNKIDl~dreedd  308 (741)
T PRK09866        231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVG-QSVPLYVLVNKFDQQDRNSDD  308 (741)
T ss_pred             CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcC-CCCCEEEEEEcccCCCcccch
Confidence            5779999996432     2234457899999999999987433222 22333343322 135999999999986433333


Q ss_pred             HHHHHHHHH----HcC---CcEEEEeCCCCCCHHHHHHHHHH
Q 028251          131 KEEGEQFAK----ENG---LLFLEASARTAQNVEEAFIKTAA  165 (211)
Q Consensus       131 ~~~~~~~~~----~~~---~~~~~~s~~~~~~i~~~~~~i~~  165 (211)
                      .+....+..    ..+   ..++++||+.|.|++++++.|.+
T Consensus       309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            444444432    112   35999999999999999988876

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.57  E-value=1.9e-14  Score=116.27  Aligned_cols=166  Identities=22%  Similarity=0.209  Sum_probs=107.1

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc-hhh--------chHHH
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES-FRS--------ITRSY   75 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~-~~~--------~~~~~   75 (211)
                      ..++|+|+|+|++|||||+|.|.........+.+ |++.......++-..+.+.|.||+|..+ ...        .....
T Consensus       267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~-GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~  345 (531)
T KOG1191|consen  267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVP-GTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR  345 (531)
T ss_pred             cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCC-CcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence            4589999999999999999999988776554444 5555555555544556678999999554 111        23345


Q ss_pred             hccccEEEEEEECC--CHHHHHHHHHHHHHHHHhcC------CCCeEEEEEecCCCCCC-CCCCHHHHHHHHHHc---CC
Q 028251           76 YRGAAGALLVYDIT--RRETFNHLSSWLEDARQHAN------PNMSIMLVGNKCDLAHR-RAVSKEEGEQFAKEN---GL  143 (211)
Q Consensus        76 ~~~~d~~i~v~d~~--~~~~~~~~~~~~~~~~~~~~------~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~---~~  143 (211)
                      +..+|++++|+|+.  +-++...+...+........      .+.|++++.||.|+... .++...- ..+....   ..
T Consensus       346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~-~~~~~~~~~~~~  424 (531)
T KOG1191|consen  346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIP-VVYPSAEGRSVF  424 (531)
T ss_pred             HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCc-eeccccccCccc
Confidence            67899999999993  33332333333333322211      24889999999999654 2222111 1111111   22


Q ss_pred             c-EEEEeCCCCCCHHHHHHHHHHHHHHHHh
Q 028251          144 L-FLEASARTAQNVEEAFIKTAAKILQNIQ  172 (211)
Q Consensus       144 ~-~~~~s~~~~~~i~~~~~~i~~~~~~~~~  172 (211)
                      + ..++|+++++|++.+.+.+...+.....
T Consensus       425 ~i~~~vs~~tkeg~~~L~~all~~~~~~~~  454 (531)
T KOG1191|consen  425 PIVVEVSCTTKEGCERLSTALLNIVERLVV  454 (531)
T ss_pred             ceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence            3 4559999999999999888877765554

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.56  E-value=2.2e-14  Score=95.58  Aligned_cols=136  Identities=21%  Similarity=0.198  Sum_probs=95.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCc----cchhhchHHHhccccEEE
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ----ESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~----~~~~~~~~~~~~~~d~~i   83 (211)
                      |++++|+.|+|||||.+.|.+....  +..+..       ++++...    ..||||.    ..+..........+|+++
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~l--ykKTQA-------ve~~d~~----~IDTPGEy~~~~~~Y~aL~tt~~dadvi~   69 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDTL--YKKTQA-------VEFNDKG----DIDTPGEYFEHPRWYHALITTLQDADVII   69 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchhh--hcccce-------eeccCcc----ccCCchhhhhhhHHHHHHHHHhhccceee
Confidence            7899999999999999999876532  223322       2232222    4699993    233333445567899999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEeCCCCCCHHHHHHH
Q 028251           84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIK  162 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~~~  162 (211)
                      +|-+++++++.     +-..+....  ..|+|=+++|.|+++..  ..+..+++..+-|. ++|.+|+.++.|+++++..
T Consensus        70 ~v~~and~~s~-----f~p~f~~~~--~k~vIgvVTK~DLaed~--dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~  140 (148)
T COG4917          70 YVHAANDPESR-----FPPGFLDIG--VKKVIGVVTKADLAEDA--DISLVKRWLREAGAEPIFETSAVDNQGVEELVDY  140 (148)
T ss_pred             eeecccCcccc-----CCccccccc--ccceEEEEecccccchH--hHHHHHHHHHHcCCcceEEEeccCcccHHHHHHH
Confidence            99999998651     112222222  56699999999997633  34667788888886 5999999999999999887


Q ss_pred             HHH
Q 028251          163 TAA  165 (211)
Q Consensus       163 i~~  165 (211)
                      |..
T Consensus       141 L~~  143 (148)
T COG4917         141 LAS  143 (148)
T ss_pred             HHh
Confidence            754

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.55  E-value=2.2e-13  Score=109.79  Aligned_cols=159  Identities=23%  Similarity=0.255  Sum_probs=115.3

Q ss_pred             CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCC-------------CCCCeeeEEEEEEEEE-----CCEEEEEEEEeCCC
Q 028251            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-------------HDLTIGVEFGARMVTI-----DGRPIKLQIWDTAG   64 (211)
Q Consensus         3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~-------------~~~~~~~~~~~~~~~~-----~~~~~~l~l~D~~G   64 (211)
                      .++.-+..++-+-.-|||||..||+.....-.             ...-.|+++....+.+     ++..+.++++||||
T Consensus         6 ~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPG   85 (603)
T COG0481           6 QKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPG   85 (603)
T ss_pred             hhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCC
Confidence            34555788899999999999999974322110             1111244444433332     55778999999999


Q ss_pred             ccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCc
Q 028251           65 QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL  144 (211)
Q Consensus        65 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  144 (211)
                      +-.|.......+..+.+.++|+|+++.-..+.+...+..+..    +.-++-|+||.||+.....  .-..++..-.|++
T Consensus        86 HVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----~LeIiPViNKIDLP~Adpe--rvk~eIe~~iGid  159 (603)
T COG0481          86 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPAADPE--RVKQEIEDIIGID  159 (603)
T ss_pred             ccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----CcEEEEeeecccCCCCCHH--HHHHHHHHHhCCC
Confidence            999999888889999999999999998766667666665543    7889999999999764321  1222233335654


Q ss_pred             ---EEEEeCCCCCCHHHHHHHHHHHH
Q 028251          145 ---FLEASARTAQNVEEAFIKTAAKI  167 (211)
Q Consensus       145 ---~~~~s~~~~~~i~~~~~~i~~~~  167 (211)
                         .+.+||++|.||+++++.|++.+
T Consensus       160 ~~dav~~SAKtG~gI~~iLe~Iv~~i  185 (603)
T COG0481         160 ASDAVLVSAKTGIGIEDVLEAIVEKI  185 (603)
T ss_pred             cchheeEecccCCCHHHHHHHHHhhC
Confidence               89999999999999988887776

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.54  E-value=4.4e-13  Score=109.28  Aligned_cols=83  Identities=22%  Similarity=0.247  Sum_probs=56.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEE---------------------EC-CEEEEEEEEeCCC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVT---------------------ID-GRPIKLQIWDTAG   64 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~l~l~D~~G   64 (211)
                      ++|+++|.+++|||||+|+|++........+..+.+.......                     .+ .....+++||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            6899999999999999999998876543333333222222211                     11 1236789999999


Q ss_pred             cc----chhhchHHH---hccccEEEEEEECC
Q 028251           65 QE----SFRSITRSY---YRGAAGALLVYDIT   89 (211)
Q Consensus        65 ~~----~~~~~~~~~---~~~~d~~i~v~d~~   89 (211)
                      ..    ....+...+   ++.+|++++|+|+.
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            42    233333344   88999999999996

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.53  E-value=1e-13  Score=110.20  Aligned_cols=155  Identities=19%  Similarity=0.167  Sum_probs=107.4

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCC-----------------------------CCCCeeeEEEEEEEEECCEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-----------------------------HDLTIGVEFGARMVTIDGRP   54 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~   54 (211)
                      ...++++++|+..+|||||+=+|+...-...                             ...-.|.++......++...
T Consensus         5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k   84 (428)
T COG5256           5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK   84 (428)
T ss_pred             CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence            4678999999999999999999864321100                             01123777777778888778


Q ss_pred             EEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCC
Q 028251           55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---F---NHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA  128 (211)
Q Consensus        55 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  128 (211)
                      ..+.|.|+||+..|-.....-+.++|+.|+|+|+.+.+.   |   .+.+. ...+.+... -..+||++||+|+.+-++
T Consensus        85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrE-H~~La~tlG-i~~lIVavNKMD~v~wde  162 (428)
T COG5256          85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTRE-HAFLARTLG-IKQLIVAVNKMDLVSWDE  162 (428)
T ss_pred             ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhH-HHHHHHhcC-CceEEEEEEcccccccCH
Confidence            889999999999998888888999999999999988631   1   11111 112222222 456888899999976433


Q ss_pred             CCHHHHH----HHHHHcC-----CcEEEEeCCCCCCHHHHH
Q 028251          129 VSKEEGE----QFAKENG-----LLFLEASARTAQNVEEAF  160 (211)
Q Consensus       129 ~~~~~~~----~~~~~~~-----~~~~~~s~~~~~~i~~~~  160 (211)
                      ...+++.    .+.+..+     ++|+++|+..|+|+.+.-
T Consensus       163 ~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s  203 (428)
T COG5256         163 ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKS  203 (428)
T ss_pred             HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccC
Confidence            3333332    2333333     569999999999987754

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.52  E-value=4e-14  Score=98.82  Aligned_cols=156  Identities=17%  Similarity=0.231  Sum_probs=107.4

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      .+.-|++++|-.++|||||++.|.+.+.....+. .-++  ...+.+.  +.++.-.|.+|+...+..|..++..+|+++
T Consensus        18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPT-lHPT--SE~l~Ig--~m~ftt~DLGGH~qArr~wkdyf~~v~~iv   92 (193)
T KOG0077|consen   18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPT-LHPT--SEELSIG--GMTFTTFDLGGHLQARRVWKDYFPQVDAIV   92 (193)
T ss_pred             ccCceEEEEeecCCchhhHHHHHccccccccCCC-cCCC--hHHheec--CceEEEEccccHHHHHHHHHHHHhhhceeE
Confidence            4556899999999999999999998876543221 1111  1112233  455778999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHH---HH---c--------C---CcE
Q 028251           84 LVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFA---KE---N--------G---LLF  145 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~---~~---~--------~---~~~  145 (211)
                      +.+|+.|.+.+...+..++.+.... ..+.|++|.+||+|.+...  +.++.+...   +.   .        +   +.+
T Consensus        93 ~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~ev  170 (193)
T KOG0077|consen   93 YLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEV  170 (193)
T ss_pred             eeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCCCCeEEE
Confidence            9999999998877766555554333 2589999999999986543  223322111   11   1        1   125


Q ss_pred             EEEeCCCCCCHHHHHHHHHHH
Q 028251          146 LEASARTAQNVEEAFIKTAAK  166 (211)
Q Consensus       146 ~~~s~~~~~~i~~~~~~i~~~  166 (211)
                      +-+|...+.+--+.|.++.+.
T Consensus       171 fmcsi~~~~gy~e~fkwl~qy  191 (193)
T KOG0077|consen  171 FMCSIVRKMGYGEGFKWLSQY  191 (193)
T ss_pred             EEEEEEccCccceeeeehhhh
Confidence            667777766666666665543

>cd00066 G-alpha G protein alpha subunit

Probab=99.51  E-value=5.9e-13  Score=105.98  Aligned_cols=121  Identities=21%  Similarity=0.246  Sum_probs=84.6

Q ss_pred             CCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCH----------HHHHHHHHHHHHHHHhc-CCCCeEEEEEe
Q 028251           51 DGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR----------ETFNHLSSWLEDARQHA-NPNMSIMLVGN  119 (211)
Q Consensus        51 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~-~~~~p~ivv~n  119 (211)
                      ....+.+.+||++|+...+..|..++.+++++|||+|+++.          ..+......+..+.... -.+.|+++++|
T Consensus       157 ~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~N  236 (317)
T cd00066         157 TIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLN  236 (317)
T ss_pred             EecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEcc
Confidence            33456788999999999999999999999999999999874          22322223333332222 15899999999


Q ss_pred             cCCCCCC--------------C--CCCHHHHHHHHHH----------cCCcEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 028251          120 KCDLAHR--------------R--AVSKEEGEQFAKE----------NGLLFLEASARTAQNVEEAFIKTAAKILQNI  171 (211)
Q Consensus       120 K~Dl~~~--------------~--~~~~~~~~~~~~~----------~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~  171 (211)
                      |.|+..+              .  ....+.+..+...          ..+....++|.+..++..+|+.+.+.++...
T Consensus       237 K~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~  314 (317)
T cd00066         237 KKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN  314 (317)
T ss_pred             ChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence            9996221              1  2234444443332          1234678899999999999999998887754

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.51  E-value=1.2e-13  Score=111.83  Aligned_cols=165  Identities=14%  Similarity=0.099  Sum_probs=117.8

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc-----hh----hchHHH
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES-----FR----SITRSY   75 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~-----~~----~~~~~~   75 (211)
                      ..-.++|+|.+++|||||+|.+..........++++.....  -+++....+|++.||||.-.     ..    ....+.
T Consensus       167 ~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~v--GH~dykYlrwQViDTPGILD~plEdrN~IEmqsITAL  244 (620)
T KOG1490|consen  167 NTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLV--GHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITAL  244 (620)
T ss_pred             CcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhh--hhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHH
Confidence            55689999999999999999999777665555554444443  34566667899999999321     11    112333


Q ss_pred             hccccEEEEEEECCCH--HHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHH---HHHHHHHcCCcEEEEeC
Q 028251           76 YRGAAGALLVYDITRR--ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE---GEQFAKENGLLFLEASA  150 (211)
Q Consensus        76 ~~~~d~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~s~  150 (211)
                      .+--.+|+|++|++..  .+...-..++..|..... ++|+|+|+||+|+.....++.+.   .......-+++++.+|+
T Consensus       245 AHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFa-NK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~  323 (620)
T KOG1490|consen  245 AHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA-NKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSC  323 (620)
T ss_pred             HHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhc-CCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecc
Confidence            3445589999999884  344444556667766664 89999999999997766665433   33444445689999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHh
Q 028251          151 RTAQNVEEAFIKTAAKILQNIQ  172 (211)
Q Consensus       151 ~~~~~i~~~~~~i~~~~~~~~~  172 (211)
                      .+.+|+-++-...++.+++..-
T Consensus       324 ~~eegVm~Vrt~ACe~LLa~RV  345 (620)
T KOG1490|consen  324 VQEEGVMDVRTTACEALLAARV  345 (620)
T ss_pred             cchhceeeHHHHHHHHHHHHHH
Confidence            9999999999888877776554

>PRK00007 elongation factor G; Reviewed

Probab=99.50  E-value=5e-13  Score=116.60  Aligned_cols=118  Identities=18%  Similarity=0.120  Sum_probs=80.2

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCC-----CC-----------CCeeeEEEEEEEEECCEEEEEEEEeCCCccc
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-----HD-----------LTIGVEFGARMVTIDGRPIKLQIWDTAGQES   67 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~-----~~-----------~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~   67 (211)
                      +...+|+|+|+.++|||||+++|+.......     ..           ...+.+.......+......+.++||||+..
T Consensus         8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~   87 (693)
T PRK00007          8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD   87 (693)
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH
Confidence            3456999999999999999999974221100     00           1123333333333333456788999999988


Q ss_pred             hhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCC
Q 028251           68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH  125 (211)
Q Consensus        68 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  125 (211)
                      +.......+..+|++|+|+|+......+.... +..+..   .+.|.++++||+|+..
T Consensus        88 f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~-~~~~~~---~~~p~iv~vNK~D~~~  141 (693)
T PRK00007         88 FTIEVERSLRVLDGAVAVFDAVGGVEPQSETV-WRQADK---YKVPRIAFVNKMDRTG  141 (693)
T ss_pred             HHHHHHHHHHHcCEEEEEEECCCCcchhhHHH-HHHHHH---cCCCEEEEEECCCCCC
Confidence            87777888899999999999887543333222 233333   3789999999999875

>PRK12740 elongation factor G; Reviewed

Probab=99.49  E-value=7.1e-13  Score=115.57  Aligned_cols=109  Identities=21%  Similarity=0.234  Sum_probs=75.1

Q ss_pred             EcCCCCCHHHHHHHHHhCCCCCCC-----C-----------CCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHH
Q 028251           12 IGDTGVGKSCLLLQFTDKRFQPVH-----D-----------LTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSY   75 (211)
Q Consensus        12 vG~~~~GKSsli~~l~~~~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~   75 (211)
                      +|+.++|||||+++|+........     .           ...+.+.......+......+.+|||||+..+...+..+
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~   80 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA   80 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence            699999999999999643221100     0           011333333333343345678999999998887888888


Q ss_pred             hccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCC
Q 028251           76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA  124 (211)
Q Consensus        76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  124 (211)
                      +..+|++++|+|+++.........| ..+..   .+.|+++++||+|+.
T Consensus        81 l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~---~~~p~iiv~NK~D~~  125 (668)
T PRK12740         81 LRVLDGAVVVVCAVGGVEPQTETVW-RQAEK---YGVPRIIFVNKMDRA  125 (668)
T ss_pred             HHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH---cCCCEEEEEECCCCC
Confidence            9999999999999886554433333 33322   378999999999975

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.48  E-value=1.1e-12  Score=100.67  Aligned_cols=119  Identities=20%  Similarity=0.252  Sum_probs=72.5

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCC-CCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh---c-------h
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS---I-------T   72 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~---~-------~   72 (211)
                      +..++|+|+|.+|+|||||+|+|++........ ...+..........++  ..+.+|||||......   .       .
T Consensus        29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~I  106 (249)
T cd01853          29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSSI  106 (249)
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence            467899999999999999999999887543322 2223333333334444  4578999999654411   1       2


Q ss_pred             HHHhc--cccEEEEEEECCCHH-HHHHHHHHHHHHHHhcCC--CCeEEEEEecCCCCC
Q 028251           73 RSYYR--GAAGALLVYDITRRE-TFNHLSSWLEDARQHANP--NMSIMLVGNKCDLAH  125 (211)
Q Consensus        73 ~~~~~--~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~Dl~~  125 (211)
                      ..++.  ..|++++|..++... ... -...+..+......  -.++++|.||+|...
T Consensus       107 ~~~l~~~~idvIL~V~rlD~~r~~~~-d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~  163 (249)
T cd01853         107 KRYLKKKTPDVVLYVDRLDMYRRDYL-DLPLLRAITDSFGPSIWRNAIVVLTHAASSP  163 (249)
T ss_pred             HHHHhccCCCEEEEEEcCCCCCCCHH-HHHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence            22332  577888887665432 222 12333344333221  256999999999854

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.48  E-value=5.7e-13  Score=100.33  Aligned_cols=161  Identities=19%  Similarity=0.176  Sum_probs=93.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCC--CCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh-------chH----
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHD--LTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS-------ITR----   73 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~-------~~~----   73 (211)
                      ++|+|+|.+|+||||++|.+++........  .+.+.........+++..  +.++||||......       ...    
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~--v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQ--VTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEE--EEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceE--EEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            589999999999999999999888755432  233444444445667644  67999999432111       111    


Q ss_pred             HHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEecCCCCCCCCCC-------HHHHHHHHHHcCCc
Q 028251           74 SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVS-------KEEGEQFAKENGLL  144 (211)
Q Consensus        74 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~-------~~~~~~~~~~~~~~  144 (211)
                      ...+..|++++|+.+.. -+... ...+..+.....  .-..++|+++..|...+..+.       ......+....+..
T Consensus        79 ~~~~g~ha~llVi~~~r-~t~~~-~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R  156 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLGR-FTEED-REVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR  156 (212)
T ss_dssp             HTTT-ESEEEEEEETTB--SHHH-HHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             hccCCCeEEEEEEecCc-chHHH-HHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence            12456899999999883 22211 222233333222  124678888888865443311       01234566667878


Q ss_pred             EEEEeCC------CCCCHHHHHHHHHHHHHHHH
Q 028251          145 FLEASAR------TAQNVEEAFIKTAAKILQNI  171 (211)
Q Consensus       145 ~~~~s~~------~~~~i~~~~~~i~~~~~~~~  171 (211)
                      ++.++.+      ....+.++++.|-+.+.+.-
T Consensus       157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~  189 (212)
T PF04548_consen  157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENG  189 (212)
T ss_dssp             EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence            8888776      23467777777776665543

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.48  E-value=6.1e-13  Score=116.45  Aligned_cols=117  Identities=19%  Similarity=0.198  Sum_probs=80.2

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCC---------------CCCC---CCCCeeeEEEEEEEEECCEEEEEEEEeCCCc
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKR---------------FQPV---HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ   65 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~---------------~~~~---~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~   65 (211)
                      +...+|+++|+.++|||||+++|+...               +.+.   ...+.........+.+++...++.+|||||+
T Consensus        17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~   96 (720)
T TIGR00490        17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH   96 (720)
T ss_pred             ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence            456799999999999999999997531               1110   0011111111222345677788999999999


Q ss_pred             cchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCC
Q 028251           66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA  124 (211)
Q Consensus        66 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  124 (211)
                      ..+.......+..+|++|+|+|+.+....+....| ....   ..+.|.++++||+|..
T Consensus        97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~-~~~~---~~~~p~ivviNKiD~~  151 (720)
T TIGR00490        97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVL-RQAL---KENVKPVLFINKVDRL  151 (720)
T ss_pred             cccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHH-HHHH---HcCCCEEEEEEChhcc
Confidence            99888888999999999999999874322222222 2222   2367889999999985

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.47  E-value=2.1e-12  Score=100.87  Aligned_cols=125  Identities=15%  Similarity=0.088  Sum_probs=73.2

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCC-CCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhch---HHHh----
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSIT---RSYY----   76 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~---~~~~----   76 (211)
                      ..++|+++|.+|+||||++|+|++........ .+.+.+........+  ...+.+|||||........   ...+    
T Consensus        37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~--G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l  114 (313)
T TIGR00991        37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRA--GFTLNIIDTPGLIEGGYINDQAVNIIKRFL  114 (313)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--CeEEEEEECCCCCchHHHHHHHHHHHHHHh
Confidence            57899999999999999999999876532211 222222222223334  4568999999966432211   1112    


Q ss_pred             --ccccEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEecCCCCCCCCCCH
Q 028251           77 --RGAAGALLVYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSK  131 (211)
Q Consensus        77 --~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~  131 (211)
                        ...|+++||..++.......-...+..+.....  .-.+.+|++|+.|...+...+.
T Consensus       115 ~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~~  173 (313)
T TIGR00991       115 LGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEY  173 (313)
T ss_pred             hcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCCH
Confidence              268999999765432111111223333333322  2357899999999764433343

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.46  E-value=2.9e-13  Score=102.24  Aligned_cols=169  Identities=15%  Similarity=0.157  Sum_probs=97.5

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCC-------Ce-----eeEEEEEE-EE---------------------
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-------TI-----GVEFGARM-VT---------------------   49 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~-------~~-----~~~~~~~~-~~---------------------   49 (211)
                      +.++-|+++|..|+|||||++||..+-.....++       .+     +..+.++. +.                     
T Consensus        17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLN   96 (366)
T KOG1532|consen   17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLN   96 (366)
T ss_pred             cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHH
Confidence            3567899999999999999999975533222211       11     00000000 00                     


Q ss_pred             --------------ECCEEEEEEEEeCCCccchhh------c-hHHHhc-cccEEEEEEECCCHH-HHHHHHHHHHHHHH
Q 028251           50 --------------IDGRPIKLQIWDTAGQESFRS------I-TRSYYR-GAAGALLVYDITRRE-TFNHLSSWLEDARQ  106 (211)
Q Consensus        50 --------------~~~~~~~l~l~D~~G~~~~~~------~-~~~~~~-~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~  106 (211)
                                    -....+++.++||||+.+...      . ...+.. ..-++++|+|..... ....+..++.....
T Consensus        97 LF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSi  176 (366)
T KOG1532|consen   97 LFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSI  176 (366)
T ss_pred             HHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHH
Confidence                          012335688999999754322      2 222222 233788888864321 12223344444444


Q ss_pred             hcCCCCeEEEEEecCCCCCCCCCC-----HHHHHHHHH---------------------HcCCcEEEEeCCCCCCHHHHH
Q 028251          107 HANPNMSIMLVGNKCDLAHRRAVS-----KEEGEQFAK---------------------ENGLLFLEASARTAQNVEEAF  160 (211)
Q Consensus       107 ~~~~~~p~ivv~nK~Dl~~~~~~~-----~~~~~~~~~---------------------~~~~~~~~~s~~~~~~i~~~~  160 (211)
                      ..+.+.|+|++.||+|+.+..-..     .+..++-..                     ..++..+-+|+.+|.|++++|
T Consensus       177 lyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~  256 (366)
T KOG1532|consen  177 LYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFF  256 (366)
T ss_pred             HHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHH
Confidence            445699999999999986532110     000000000                     035668899999999999999


Q ss_pred             HHHHHHHHHHHh
Q 028251          161 IKTAAKILQNIQ  172 (211)
Q Consensus       161 ~~i~~~~~~~~~  172 (211)
                      ..+.+.+-+...
T Consensus       257 ~av~~~vdEy~~  268 (366)
T KOG1532|consen  257 TAVDESVDEYEE  268 (366)
T ss_pred             HHHHHHHHHHHH
Confidence            998877765443

>smart00275 G_alpha G protein alpha subunit

Probab=99.44  E-value=3.7e-12  Score=102.25  Aligned_cols=118  Identities=20%  Similarity=0.260  Sum_probs=82.3

Q ss_pred             EEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHH----------HHHHHHHHHHHHHHhc-CCCCeEEEEEecCC
Q 028251           54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE----------TFNHLSSWLEDARQHA-NPNMSIMLVGNKCD  122 (211)
Q Consensus        54 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D  122 (211)
                      ...+.+||.+|+...+..|..++.+++++|||+|+++..          .+......+..+.... -.+.|++|++||.|
T Consensus       183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D  262 (342)
T smart00275      183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKID  262 (342)
T ss_pred             CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHH
Confidence            455789999999999999999999999999999999732          2333333333333221 25799999999999


Q ss_pred             CCCC--------------C-CCCHHHHHHHHHH-----c------CCcEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 028251          123 LAHR--------------R-AVSKEEGEQFAKE-----N------GLLFLEASARTAQNVEEAFIKTAAKILQNI  171 (211)
Q Consensus       123 l~~~--------------~-~~~~~~~~~~~~~-----~------~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~  171 (211)
                      +..+              . ....+.+..+...     .      .+..+.++|.+..++..+|+.+...+++..
T Consensus       263 ~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~  337 (342)
T smart00275      263 LFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRN  337 (342)
T ss_pred             hHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHH
Confidence            7321              1 1233333333322     1      234678889999999999999888887765

Subunit of G proteins that contains the guanine nucleotide binding site

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.44  E-value=7.5e-13  Score=96.40  Aligned_cols=114  Identities=17%  Similarity=0.261  Sum_probs=78.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhc---cccEE
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYR---GAAGA   82 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~---~~d~~   82 (211)
                      .-.|+++|+.++|||+|+-+|..+.....+..   .+-....+.+...  .+.++|.||+.+.+.-...+++   .+-++
T Consensus        38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtS---iepn~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~akai  112 (238)
T KOG0090|consen   38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTVTS---IEPNEATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKAI  112 (238)
T ss_pred             CCcEEEEecCCCCceeeeeehhcCCccCeeee---eccceeeEeecCc--ceEEEeCCCcHHHHHHHHHHccccccceeE
Confidence            35799999999999999999887744333221   1112222223222  2689999999999887666766   68899


Q ss_pred             EEEEECCC-HHHHHHHHHHHHHHHHhc---CCCCeEEEEEecCCCC
Q 028251           83 LLVYDITR-RETFNHLSSWLEDARQHA---NPNMSIMLVGNKCDLA  124 (211)
Q Consensus        83 i~v~d~~~-~~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~  124 (211)
                      |||+|..- +.....+..++..+....   ..+.|++|+.||.|+.
T Consensus       113 VFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~  158 (238)
T KOG0090|consen  113 VFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLF  158 (238)
T ss_pred             EEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhh
Confidence            99999754 333455555555443333   4688999999999984

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.42  E-value=1.1e-11  Score=110.62  Aligned_cols=145  Identities=26%  Similarity=0.267  Sum_probs=93.1

Q ss_pred             CCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCE-----------EE-----EEEEEeCCCccchhhchHHHhcccc
Q 028251           17 VGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGR-----------PI-----KLQIWDTAGQESFRSITRSYYRGAA   80 (211)
Q Consensus        17 ~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~-----~l~l~D~~G~~~~~~~~~~~~~~~d   80 (211)
                      ++||||+.+|.+...........+..+....+..+..           ..     .+.||||||++.+..+....+..+|
T Consensus       472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD  551 (1049)
T PRK14845        472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD  551 (1049)
T ss_pred             cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence            3599999999987765443333333333333333210           01     2789999999999888888888999


Q ss_pred             EEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCC----------------HHHHH----HH
Q 028251           81 GALLVYDITR---RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS----------------KEEGE----QF  137 (211)
Q Consensus        81 ~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~----------------~~~~~----~~  137 (211)
                      ++++|+|+++   +.++..+.    .+..   .+.|+++++||+|+.......                ..+..    ..
T Consensus       552 ivlLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v  624 (1049)
T PRK14845        552 LAVLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYEL  624 (1049)
T ss_pred             EEEEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            9999999987   34433332    2222   278999999999985321100                01110    00


Q ss_pred             ---HHH---------------cCCcEEEEeCCCCCCHHHHHHHHHHHHH
Q 028251          138 ---AKE---------------NGLLFLEASARTAQNVEEAFIKTAAKIL  168 (211)
Q Consensus       138 ---~~~---------------~~~~~~~~s~~~~~~i~~~~~~i~~~~~  168 (211)
                         ..+               ..++++++||++|+|+++++..|.....
T Consensus       625 ~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~  673 (1049)
T PRK14845        625 IGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ  673 (1049)
T ss_pred             hhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence               011               1356899999999999999987765443

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.42  E-value=7.5e-13  Score=101.67  Aligned_cols=96  Identities=22%  Similarity=0.285  Sum_probs=76.9

Q ss_pred             cchhhchHHHhccccEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCc
Q 028251           66 ESFRSITRSYYRGAAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL  144 (211)
Q Consensus        66 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  144 (211)
                      +++..+.+.++.++|++++|||+.++. ++..+..|+..+..   .+.|+++|+||+||.+......+....+ ...+++
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~   99 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQ   99 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCe
Confidence            567777888999999999999999887 89999999876643   3799999999999965443333334433 457889


Q ss_pred             EEEEeCCCCCCHHHHHHHHHH
Q 028251          145 FLEASARTAQNVEEAFIKTAA  165 (211)
Q Consensus       145 ~~~~s~~~~~~i~~~~~~i~~  165 (211)
                      ++++||+++.|++++|+.+..
T Consensus       100 v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157       100 VLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             EEEEecCCchhHHHHHhhhcC
Confidence            999999999999999987753

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PTZ00258 GTP-binding protein; Provisional

Probab=99.41  E-value=9.8e-12  Score=100.58  Aligned_cols=85  Identities=21%  Similarity=0.185  Sum_probs=59.5

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCE---------------EEEEEEEeCCCccc--
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGR---------------PIKLQIWDTAGQES--   67 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~l~l~D~~G~~~--   67 (211)
                      ..++|+|+|.|++|||||+|+|.+........+.++.+.....+.+.+.               ..++.++|+||...  
T Consensus        20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga   99 (390)
T PTZ00258         20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGA   99 (390)
T ss_pred             CCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCC
Confidence            5679999999999999999999887765544455454544444444432               23588999999432  


Q ss_pred             -----hhhchHHHhccccEEEEEEECC
Q 028251           68 -----FRSITRSYYRGAAGALLVYDIT   89 (211)
Q Consensus        68 -----~~~~~~~~~~~~d~~i~v~d~~   89 (211)
                           ........++.+|++++|+|..
T Consensus       100 ~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258        100 SEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             cchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence                 1112334567899999999973

>TIGR00101 ureG urease accessory protein UreG

Probab=99.39  E-value=1.7e-11  Score=91.32  Aligned_cols=102  Identities=17%  Similarity=0.117  Sum_probs=64.8

Q ss_pred             EEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHH
Q 028251           55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEG  134 (211)
Q Consensus        55 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~  134 (211)
                      ....+.++.|..........   -+|.+|.|+|+.+......  .+...+      ...-++++||+|+.+......+..
T Consensus        92 ~D~iiIEt~G~~l~~~~~~~---l~~~~i~vvD~~~~~~~~~--~~~~qi------~~ad~~~~~k~d~~~~~~~~~~~~  160 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFSPE---LADLTIFVIDVAAGDKIPR--KGGPGI------TRSDLLVINKIDLAPMVGADLGVM  160 (199)
T ss_pred             CCEEEEECCCCCcccccchh---hhCcEEEEEEcchhhhhhh--hhHhHh------hhccEEEEEhhhccccccccHHHH
Confidence            45667788884322222222   2578999999987654221  111111      122389999999975322233444


Q ss_pred             HHHHHH--cCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 028251          135 EQFAKE--NGLLFLEASARTAQNVEEAFIKTAAKI  167 (211)
Q Consensus       135 ~~~~~~--~~~~~~~~s~~~~~~i~~~~~~i~~~~  167 (211)
                      .+..+.  .+.+++++|+++|.|++++|++|.+.+
T Consensus       161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~  195 (199)
T TIGR00101       161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA  195 (199)
T ss_pred             HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            444443  457899999999999999999998765

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=99.38  E-value=3.2e-11  Score=93.32  Aligned_cols=160  Identities=15%  Similarity=0.282  Sum_probs=112.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEEC--CEEEEEEEEeCCCccchhhchHHHhcccc---
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID--GRPIKLQIWDTAGQESFRSITRSYYRGAA---   80 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~l~D~~G~~~~~~~~~~~~~~~d---   80 (211)
                      .-+|+|+|..++||||||.+|-+..   ...+..+..+....++-+  +...++.+|-.-|+.-+..+....+....   
T Consensus        52 gk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ae  128 (473)
T KOG3905|consen   52 GKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAE  128 (473)
T ss_pred             CCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccc
Confidence            3479999999999999999998664   444444666655444332  23457889999998777777666665442   


Q ss_pred             -EEEEEEECCCHHH-HHHHHHHHHHHHH-------------------------hcC------------------------
Q 028251           81 -GALLVYDITRRET-FNHLSSWLEDARQ-------------------------HAN------------------------  109 (211)
Q Consensus        81 -~~i~v~d~~~~~~-~~~~~~~~~~~~~-------------------------~~~------------------------  109 (211)
                       .+|++.|+++|.+ ++.+..|..-+.+                         +.+                        
T Consensus       129 tlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~  208 (473)
T KOG3905|consen  129 TLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHV  208 (473)
T ss_pred             eEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccc
Confidence             7899999999844 3455555442111                         111                        


Q ss_pred             ------------CCCeEEEEEecCCCC----CCCCCC-------HHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHH
Q 028251          110 ------------PNMSIMLVGNKCDLA----HRRAVS-------KEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK  166 (211)
Q Consensus       110 ------------~~~p~ivv~nK~Dl~----~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~  166 (211)
                                  -++|++||.+|+|..    .+.+..       ...+++||..+|..++.+|.+...|++-+..+|.+.
T Consensus       209 llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr  288 (473)
T KOG3905|consen  209 LLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHR  288 (473)
T ss_pred             ccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHH
Confidence                        168999999999983    111111       133567888999999999999999999998888877


Q ss_pred             HH
Q 028251          167 IL  168 (211)
Q Consensus       167 ~~  168 (211)
                      .+
T Consensus       289 ~y  290 (473)
T KOG3905|consen  289 SY  290 (473)
T ss_pred             hc
Confidence            64

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.38  E-value=7.9e-12  Score=100.72  Aligned_cols=166  Identities=17%  Similarity=0.170  Sum_probs=111.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCC--CC------------CCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhc
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQ--PV------------HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI   71 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~--~~------------~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~   71 (211)
                      .-+|+|+-+..-|||||+..|+.+...  +.            ...-.|+++-.+...+.....+++|+||||+..|...
T Consensus         5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE   84 (603)
T COG1217           5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE   84 (603)
T ss_pred             cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence            357999999999999999999865321  11            1122367777776667777788999999999999999


Q ss_pred             hHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC-CHHHHHHHHHH-------cCC
Q 028251           72 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV-SKEEGEQFAKE-------NGL  143 (211)
Q Consensus        72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~-------~~~  143 (211)
                      .+..+.-+|++++++|+.+..- .+.+   .-+.+....+.+.|||+||.|.+..+.. -.++...+..+       ..+
T Consensus        85 VERvl~MVDgvlLlVDA~EGpM-PQTr---FVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdF  160 (603)
T COG1217          85 VERVLSMVDGVLLLVDASEGPM-PQTR---FVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDF  160 (603)
T ss_pred             hhhhhhhcceEEEEEEcccCCC-Cchh---hhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCC
Confidence            9999999999999999987431 1112   2223333358889999999998765421 12333333333       466


Q ss_pred             cEEEEeCCCCC------CHHHHHHHHHHHHHHHHhhcc
Q 028251          144 LFLEASARTAQ------NVEEAFIKTAAKILQNIQEGA  175 (211)
Q Consensus       144 ~~~~~s~~~~~------~i~~~~~~i~~~~~~~~~~~~  175 (211)
                      |++..|++.|.      +-.+-+.-|.+.+++..+.+.
T Consensus       161 PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~  198 (603)
T COG1217         161 PIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK  198 (603)
T ss_pred             cEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence            78888888653      111223344445555555554

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.37  E-value=1.9e-11  Score=107.34  Aligned_cols=117  Identities=19%  Similarity=0.171  Sum_probs=78.5

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCC--C------------CeeeEEEEE--E--EEECCEEEEEEEEeCCCc
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD--L------------TIGVEFGAR--M--VTIDGRPIKLQIWDTAGQ   65 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~--~------------~~~~~~~~~--~--~~~~~~~~~l~l~D~~G~   65 (211)
                      +..-+|+++|+.++|||||+.+|+.........  .            ..+.++...  .  +..++....+.|+||||+
T Consensus        18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~   97 (731)
T PRK07560         18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH   97 (731)
T ss_pred             hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence            344579999999999999999998543211100  0            001222111  1  223445678899999999


Q ss_pred             cchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCC
Q 028251           66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA  124 (211)
Q Consensus        66 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  124 (211)
                      ..+.......+..+|++|+|+|+...........| ......   +.|.++++||+|..
T Consensus        98 ~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~-~~~~~~---~~~~iv~iNK~D~~  152 (731)
T PRK07560         98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVL-RQALRE---RVKPVLFINKVDRL  152 (731)
T ss_pred             cChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHH-HHHHHc---CCCeEEEEECchhh
Confidence            99888888899999999999999875432222233 222222   56789999999975

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.35  E-value=2.7e-11  Score=100.00  Aligned_cols=160  Identities=21%  Similarity=0.294  Sum_probs=119.1

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ...++..++|+.++|||.|++.++++.+......+....+.+......+....+.+-|.+-. ....+...- ..+|++.
T Consensus       423 R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~  500 (625)
T KOG1707|consen  423 RKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVAC  500 (625)
T ss_pred             ceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEE
Confidence            36789999999999999999999999988877677777777777777676667777777643 222222222 6799999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCc-EEEEeCCCCCCHHHHHHH
Q 028251           84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIK  162 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~i~~~~~~  162 (211)
                      ++||.+++.+|..+....+.-...  .+.|+++|+.|+|+.+..+...-.-.+++..++++ .+.+|.+..-. .++|.+
T Consensus       501 ~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf~k  577 (625)
T KOG1707|consen  501 LVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELFIK  577 (625)
T ss_pred             EecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHHHH
Confidence            999999999998887765554433  58999999999999765432222237889999886 66677774323 788888


Q ss_pred             HHHHHH
Q 028251          163 TAAKIL  168 (211)
Q Consensus       163 i~~~~~  168 (211)
                      |..+..
T Consensus       578 L~~~A~  583 (625)
T KOG1707|consen  578 LATMAQ  583 (625)
T ss_pred             HHHhhh
Confidence            877664

>PRK13768 GTPase; Provisional

Probab=99.35  E-value=1.5e-11  Score=94.93  Aligned_cols=110  Identities=19%  Similarity=0.191  Sum_probs=68.7

Q ss_pred             EEEEEeCCCccchh---hchHHHhcc-----ccEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEecCCCCCC
Q 028251           56 KLQIWDTAGQESFR---SITRSYYRG-----AAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAHR  126 (211)
Q Consensus        56 ~l~l~D~~G~~~~~---~~~~~~~~~-----~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  126 (211)
                      .+.+||+||+.+..   ..+..+++.     .+++++|+|+......... ..++.........+.|+++|+||+|+...
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~  177 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE  177 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence            57899999976643   233333222     7899999999664332222 12222221111248999999999998654


Q ss_pred             CCCCHHHHHH----------------------------HHHHcC--CcEEEEeCCCCCCHHHHHHHHHHHH
Q 028251          127 RAVSKEEGEQ----------------------------FAKENG--LLFLEASARTAQNVEEAFIKTAAKI  167 (211)
Q Consensus       127 ~~~~~~~~~~----------------------------~~~~~~--~~~~~~s~~~~~~i~~~~~~i~~~~  167 (211)
                      .+.  +....                            ..+..+  .+++++|++++.|++++.++|.+.+
T Consensus       178 ~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l  246 (253)
T PRK13768        178 EEL--ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF  246 (253)
T ss_pred             hhH--HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence            221  11111                            111223  5789999999999999999987765

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.34  E-value=6.5e-12  Score=111.62  Aligned_cols=118  Identities=19%  Similarity=0.186  Sum_probs=81.0

Q ss_pred             CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCC-----------C---CeeeEEEE--EEEEE--------------CC
Q 028251            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-----------L---TIGVEFGA--RMVTI--------------DG   52 (211)
Q Consensus         3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~-----------~---~~~~~~~~--~~~~~--------------~~   52 (211)
                      .+..-+|+|+|+.++|||||+++|+.........           .   ..+.++..  ..+.+              ++
T Consensus        16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~   95 (843)
T PLN00116         16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG   95 (843)
T ss_pred             ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence            3456799999999999999999998543211000           0   01222221  11222              12


Q ss_pred             EEEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCC
Q 028251           53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA  124 (211)
Q Consensus        53 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  124 (211)
                      ....++++||||+..|.......++.+|++|+|+|+.+.........|. .+.   ..+.|+++++||+|..
T Consensus        96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~-~~~---~~~~p~i~~iNK~D~~  163 (843)
T PLN00116         96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QAL---GERIRPVLTVNKMDRC  163 (843)
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHH-HHH---HCCCCEEEEEECCccc
Confidence            3567899999999999998899999999999999998864433333332 222   2378999999999985

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.34  E-value=1.4e-11  Score=98.72  Aligned_cols=157  Identities=11%  Similarity=0.128  Sum_probs=76.9

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCC---eeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHH-----h
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT---IGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSY-----Y   76 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~-----~   76 (211)
                      .+++|+|+|.+|+|||||||+|.+-.-.......   +..+.....+.....+ .+.+||.||......-...|     +
T Consensus        34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~p-nv~lWDlPG~gt~~f~~~~Yl~~~~~  112 (376)
T PF05049_consen   34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFP-NVTLWDLPGIGTPNFPPEEYLKEVKF  112 (376)
T ss_dssp             --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-T-TEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCC-CCeEEeCCCCCCCCCCHHHHHHHccc
Confidence            5689999999999999999999864433222221   1222333333333222 37899999964333322323     5


Q ss_pred             ccccEEEEEEECCCHHHHHHHHHH-HHHHHHhcCCCCeEEEEEecCCCC-------CCCCCC----HHHHHHHHHH----
Q 028251           77 RGAAGALLVYDITRRETFNHLSSW-LEDARQHANPNMSIMLVGNKCDLA-------HRRAVS----KEEGEQFAKE----  140 (211)
Q Consensus        77 ~~~d~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~p~ivv~nK~Dl~-------~~~~~~----~~~~~~~~~~----  140 (211)
                      ...|.+|++.+-.=.    ...-+ ...+.+.   ++|+++|-+|.|..       .+....    .+++++.+.+    
T Consensus       113 ~~yD~fiii~s~rf~----~ndv~La~~i~~~---gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k  185 (376)
T PF05049_consen  113 YRYDFFIIISSERFT----ENDVQLAKEIQRM---GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQK  185 (376)
T ss_dssp             GG-SEEEEEESSS------HHHHHHHHHHHHT---T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHC
T ss_pred             cccCEEEEEeCCCCc----hhhHHHHHHHHHc---CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHH
Confidence            677888877764322    22222 2333333   89999999999961       111122    2344444443    


Q ss_pred             cCC---cEEEEeCCCCC--CHHHHHHHHHHHHHH
Q 028251          141 NGL---LFLEASARTAQ--NVEEAFIKTAAKILQ  169 (211)
Q Consensus       141 ~~~---~~~~~s~~~~~--~i~~~~~~i~~~~~~  169 (211)
                      .++   ++|.+|+.+-.  ++..+.+.|.+.+..
T Consensus       186 ~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~  219 (376)
T PF05049_consen  186 AGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPA  219 (376)
T ss_dssp             TT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-G
T ss_pred             cCCCcCceEEEeCCCcccCChHHHHHHHHHHhHH
Confidence            233   48899988753  455555555544433

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.33  E-value=3.4e-12  Score=98.45  Aligned_cols=162  Identities=18%  Similarity=0.133  Sum_probs=107.8

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCC---CCCCCeee-------------------EEEEEEEE--E---CCEEEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP---VHDLTIGV-------------------EFGARMVT--I---DGRPIKL   57 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~---~~~~~~~~-------------------~~~~~~~~--~---~~~~~~l   57 (211)
                      -.++|.++|+..-|||||.++|.+-....   +.....++                   .+......  .   ...-.++
T Consensus         9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V   88 (415)
T COG5257           9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV   88 (415)
T ss_pred             cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence            36899999999999999999997643211   11110000                   00000000  0   0123468


Q ss_pred             EEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCC--CCCHHHHH
Q 028251           58 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR--AVSKEEGE  135 (211)
Q Consensus        58 ~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~  135 (211)
                      .|+|.||++-..+....-..-.|+.++|++++.+....+...-+-.+....  -..++|+-||.|+...+  ..+.+++.
T Consensus        89 SfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig--ik~iiIvQNKIDlV~~E~AlE~y~qIk  166 (415)
T COG5257          89 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG--IKNIIIVQNKIDLVSRERALENYEQIK  166 (415)
T ss_pred             EEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc--cceEEEEecccceecHHHHHHHHHHHH
Confidence            999999999888866666667899999999998544333333333333332  45689999999996532  23445666


Q ss_pred             HHHHH---cCCcEEEEeCCCCCCHHHHHHHHHHHHH
Q 028251          136 QFAKE---NGLLFLEASARTAQNVEEAFIKTAAKIL  168 (211)
Q Consensus       136 ~~~~~---~~~~~~~~s~~~~~~i~~~~~~i~~~~~  168 (211)
                      +|.+.   .+.+++++||..+.|++.+++.|.+.+.
T Consensus       167 ~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ip  202 (415)
T COG5257         167 EFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIP  202 (415)
T ss_pred             HHhcccccCCCceeeehhhhccCHHHHHHHHHHhCC
Confidence            66664   5778999999999999999888877764

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.32  E-value=2.6e-11  Score=94.70  Aligned_cols=153  Identities=21%  Similarity=0.173  Sum_probs=106.7

Q ss_pred             CCceeeEEEEcCCCCCHHHHHHHHHhCCCCC-----------------C--------------CCCCeeeEEEEEEEEEC
Q 028251            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQP-----------------V--------------HDLTIGVEFGARMVTID   51 (211)
Q Consensus         3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~-----------------~--------------~~~~~~~~~~~~~~~~~   51 (211)
                      -...++++-+|+..=||||||=||+......                 .              ...-.|+++.....-+.
T Consensus         3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs   82 (431)
T COG2895           3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS   82 (431)
T ss_pred             cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence            3457899999999999999999997432100                 0              00012666666655666


Q ss_pred             CEEEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCH
Q 028251           52 GRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK  131 (211)
Q Consensus        52 ~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~  131 (211)
                      -.+.++.+-||||++.|..+.-.-...+|+.|+++|+...- +++. .....+..... -.++++.+||+||.+..+...
T Consensus        83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv-l~QT-rRHs~I~sLLG-IrhvvvAVNKmDLvdy~e~~F  159 (431)
T COG2895          83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV-LEQT-RRHSFIASLLG-IRHVVVAVNKMDLVDYSEEVF  159 (431)
T ss_pred             cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh-HHHh-HHHHHHHHHhC-CcEEEEEEeeecccccCHHHH
Confidence            67778999999999999998888888999999999996532 1222 11222333222 356888899999988765544


Q ss_pred             HHH----HHHHHHcCCc---EEEEeCCCCCCHHH
Q 028251          132 EEG----EQFAKENGLL---FLEASARTAQNVEE  158 (211)
Q Consensus       132 ~~~----~~~~~~~~~~---~~~~s~~~~~~i~~  158 (211)
                      +.+    ..|+...++.   ++++||+.|+|+-.
T Consensus       160 ~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~  193 (431)
T COG2895         160 EAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS  193 (431)
T ss_pred             HHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence            443    4566666654   99999999998754

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.32  E-value=3.2e-11  Score=82.81  Aligned_cols=114  Identities=29%  Similarity=0.410  Sum_probs=81.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCC-CCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      +||+++|..|+|||+|+.++....+...+. ++.+                           +......+++..+.+++|
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v   53 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC   53 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence            489999999999999999998776654433 3322                           233344566778999999


Q ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHH
Q 028251           86 YDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVE  157 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  157 (211)
                      ++..+..++..+  |...+....+.+.|.++++||.|+.+......++..        .++++|++++.++.
T Consensus        54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~~--------~~~~~s~~~~~~~~  115 (124)
T smart00010       54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEGL--------EFAETSAKTPEEGE  115 (124)
T ss_pred             EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHHH--------HHHHHhCCCcchhh
Confidence            999999888765  777666655567889999999998543333333322        34567788888763

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.32  E-value=1.9e-11  Score=97.11  Aligned_cols=114  Identities=14%  Similarity=0.076  Sum_probs=71.5

Q ss_pred             EEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC--CH
Q 028251           54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--SK  131 (211)
Q Consensus        54 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~  131 (211)
                      .+.+.|.||+|.....   ......+|.+++|.+....+....+.   ..+.     ...-++|+||+|+......  ..
T Consensus       148 g~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~gd~iq~~k---~gi~-----E~aDIiVVNKaDl~~~~~a~~~~  216 (332)
T PRK09435        148 GYDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAGDELQGIK---KGIM-----ELADLIVINKADGDNKTAARRAA  216 (332)
T ss_pred             CCCEEEEECCCCccch---hHHHHhCCEEEEEecCCchHHHHHHH---hhhh-----hhhheEEeehhcccchhHHHHHH
Confidence            4678899999976322   22566799999997754444433322   2122     2223899999998643211  11


Q ss_pred             HHHHHHHHH-------cCCcEEEEeCCCCCCHHHHHHHHHHHHHHHHhhccccc
Q 028251          132 EEGEQFAKE-------NGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDA  178 (211)
Q Consensus       132 ~~~~~~~~~-------~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~~~~~~~~  178 (211)
                      .+.......       ...+++.+|++++.|++++++.|.+.+....+.+....
T Consensus       217 ~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l~~sg~l~~  270 (332)
T PRK09435        217 AEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAALTASGEFAA  270 (332)
T ss_pred             HHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhccCChHHH
Confidence            222222221       12579999999999999999999988765555444443

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.32  E-value=1.3e-11  Score=91.80  Aligned_cols=163  Identities=20%  Similarity=0.273  Sum_probs=110.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh---chHHHhccccEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS---ITRSYYRGAAGAL   83 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~---~~~~~~~~~d~~i   83 (211)
                      .+|+++|..-+|||| +++...++..+...-....+..+..-++.+.-+.+.+||+||+-.+..   -....++.+.++|
T Consensus        28 p~ilLMG~rRsGKsS-I~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi  106 (347)
T KOG3887|consen   28 PRILLMGLRRSGKSS-IQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI  106 (347)
T ss_pred             ceEEEEeecccCcch-hhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence            679999999999999 566777777776555544444444444555667899999999876554   3566789999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEecCCCCCCC--CCCHHHHHH-----H----HHHcCCcEEEEeC
Q 028251           84 LVYDITRRETFNHLSSWLEDARQHA--NPNMSIMLVGNKCDLAHRR--AVSKEEGEQ-----F----AKENGLLFLEASA  150 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~-----~----~~~~~~~~~~~s~  150 (211)
                      +|+|+.+.. .+.+..+...+.+..  .++..+-|+++|.|-..+.  ......+.+     +    .....+.|+.+|.
T Consensus       107 fvIDaQddy-~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSI  185 (347)
T KOG3887|consen  107 FVIDAQDDY-MEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSI  185 (347)
T ss_pred             EEEechHHH-HHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeee
Confidence            999997642 344444433443333  2788899999999974321  111111111     1    1123445888888


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHh
Q 028251          151 RTAQNVEEAFIKTAAKILQNIQ  172 (211)
Q Consensus       151 ~~~~~i~~~~~~i~~~~~~~~~  172 (211)
                      .+ .++-+.|..+++++..+++
T Consensus       186 yD-HSIfEAFSkvVQkLipqLp  206 (347)
T KOG3887|consen  186 YD-HSIFEAFSKVVQKLIPQLP  206 (347)
T ss_pred             cc-hHHHHHHHHHHHHHhhhch
Confidence            87 5899999999999887776

>PTZ00416 elongation factor 2; Provisional

Probab=99.32  E-value=1.2e-11  Score=109.89  Aligned_cols=117  Identities=23%  Similarity=0.230  Sum_probs=79.5

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCC--CC------------CCeeeEEEE--EEEEEC--------CEEEEEEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV--HD------------LTIGVEFGA--RMVTID--------GRPIKLQI   59 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~--~~------------~~~~~~~~~--~~~~~~--------~~~~~l~l   59 (211)
                      +..-+|+++|+.++|||||+++|+.......  ..            ...+.++..  ..+.++        +....+.|
T Consensus        17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l   96 (836)
T PTZ00416         17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL   96 (836)
T ss_pred             cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence            4556999999999999999999986322110  00            001222221  122222        12567899


Q ss_pred             EeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCC
Q 028251           60 WDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA  124 (211)
Q Consensus        60 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  124 (211)
                      +||||+..+.......+..+|++|+|+|+.+....... ..+..+..   .+.|+++++||+|+.
T Consensus        97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~-~~~~~~~~---~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE-TVLRQALQ---ERIRPVLFINKVDRA  157 (836)
T ss_pred             EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH-HHHHHHHH---cCCCEEEEEEChhhh
Confidence            99999999888888899999999999999885433322 22333332   368999999999985

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.32  E-value=2.3e-11  Score=91.29  Aligned_cols=152  Identities=18%  Similarity=0.178  Sum_probs=83.9

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCC------------CCCCCeeeEEEEEEEEEC--------------------C
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP------------VHDLTIGVEFGARMVTID--------------------G   52 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~------------~~~~~~~~~~~~~~~~~~--------------------~   52 (211)
                      ....|+++|+.|+|||||+++++......            ......-.......+.+.                    .
T Consensus        21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~  100 (207)
T TIGR00073        21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPL  100 (207)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhcc
Confidence            46789999999999999999997541100            000000000000001110                    0


Q ss_pred             EEEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHH
Q 028251           53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE  132 (211)
Q Consensus        53 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~  132 (211)
                      ....+.+.++.|.-. ..  ..+....+..+.|+|+.+.....  ... ..  .   ...|.++++||+|+.+......+
T Consensus       101 ~~~d~IiIEt~G~l~-~~--~~~~~~~~~~i~Vvd~~~~d~~~--~~~-~~--~---~~~a~iiv~NK~Dl~~~~~~~~~  169 (207)
T TIGR00073       101 DDIDLLFIENVGNLV-CP--ADFDLGEHMRVVLLSVTEGDDKP--LKY-PG--M---FKEADLIVINKADLAEAVGFDVE  169 (207)
T ss_pred             CCCCEEEEecCCCcC-CC--cccccccCeEEEEEecCcccchh--hhh-Hh--H---HhhCCEEEEEHHHccccchhhHH
Confidence            123556777777210 01  11112344556677776543211  011 01  1   25678999999999653322233


Q ss_pred             HHHHHHHHc--CCcEEEEeCCCCCCHHHHHHHHHHHH
Q 028251          133 EGEQFAKEN--GLLFLEASARTAQNVEEAFIKTAAKI  167 (211)
Q Consensus       133 ~~~~~~~~~--~~~~~~~s~~~~~~i~~~~~~i~~~~  167 (211)
                      ......+..  ..+++++|++++.|++++++++.+..
T Consensus       170 ~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~  206 (207)
T TIGR00073       170 KMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQV  206 (207)
T ss_pred             HHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            444444443  47899999999999999999998753

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.31  E-value=1.7e-10  Score=92.50  Aligned_cols=83  Identities=19%  Similarity=0.133  Sum_probs=57.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEE---------------EEEEEEeCCCccchh--
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRP---------------IKLQIWDTAGQESFR--   69 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~l~l~D~~G~~~~~--   69 (211)
                      ++|+++|.|++|||||+|+|++........+.++.+.....+.+.+..               ..+.+.|+||.....  
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            789999999999999999999887544333444444444444444321               258899999943211  


Q ss_pred             --h---chHHHhccccEEEEEEECC
Q 028251           70 --S---ITRSYYRGAAGALLVYDIT   89 (211)
Q Consensus        70 --~---~~~~~~~~~d~~i~v~d~~   89 (211)
                        .   .....++.+|++++|+|+.
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence              1   2233467899999999973

>cd01882 BMS1 Bms1

Probab=99.30  E-value=1.6e-10  Score=87.75  Aligned_cols=139  Identities=17%  Similarity=0.171  Sum_probs=82.2

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ....|+++|++|+|||||++.+.+...........|. +   .+ ......++.++||||..   .......+.+|++++
T Consensus        38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i-~~~~~~~i~~vDtPg~~---~~~l~~ak~aDvVll  109 (225)
T cd01882          38 PPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TV-VTGKKRRLTFIECPNDI---NAMIDIAKVADLVLL  109 (225)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EE-EecCCceEEEEeCCchH---HHHHHHHHhcCEEEE
Confidence            3467999999999999999999865322111111121 1   11 11235567899999854   223345688999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCeE-EEEEecCCCCCCCC-C--CHHHHHH-HHHH--cCCcEEEEeCCCCCC
Q 028251           85 VYDITRRETFNHLSSWLEDARQHANPNMSI-MLVGNKCDLAHRRA-V--SKEEGEQ-FAKE--NGLLFLEASARTAQN  155 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~~~~-~--~~~~~~~-~~~~--~~~~~~~~s~~~~~~  155 (211)
                      |+|+........ ..++..+..   .+.|. ++++||+|+.+... .  ..+.+.. +..+  .+.+++.+||+++..
T Consensus       110 viDa~~~~~~~~-~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~  183 (225)
T cd01882         110 LIDASFGFEMET-FEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGR  183 (225)
T ss_pred             EEecCcCCCHHH-HHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence            999976433222 223333332   25675 45999999864221 1  0111222 2222  346799999998743

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.30  E-value=2.5e-12  Score=98.12  Aligned_cols=112  Identities=20%  Similarity=0.182  Sum_probs=59.4

Q ss_pred             EEEEEeCCCccchhhchHHHh--------ccccEEEEEEECCCHHH-HHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCC
Q 028251           56 KLQIWDTAGQESFRSITRSYY--------RGAAGALLVYDITRRET-FNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR  126 (211)
Q Consensus        56 ~l~l~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  126 (211)
                      .+.++|||||.++...+....        ...-++++++|+.-..+ ...+..++..+......+.|.+.++||+|+...
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~  171 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK  171 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence            578999999988777554443        33447888888754221 222333333333222238999999999999652


Q ss_pred             CC------------C-------CHHHHHHHHHH---cC-C-cEEEEeCCCCCCHHHHHHHHHHHH
Q 028251          127 RA------------V-------SKEEGEQFAKE---NG-L-LFLEASARTAQNVEEAFIKTAAKI  167 (211)
Q Consensus       127 ~~------------~-------~~~~~~~~~~~---~~-~-~~~~~s~~~~~~i~~~~~~i~~~~  167 (211)
                      ..            .       .....+..+.-   .+ . .++.+|+.+++++.+++..|-+.+
T Consensus       172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            10            0       00111122222   22 3 699999999999999998877654

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.30  E-value=1.4e-10  Score=91.96  Aligned_cols=127  Identities=22%  Similarity=0.286  Sum_probs=88.0

Q ss_pred             EEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHH-------HHHHHHHHHHHHhcC----CCCeEE
Q 028251           47 MVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF-------NHLSSWLEDARQHAN----PNMSIM  115 (211)
Q Consensus        47 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~-------~~~~~~~~~~~~~~~----~~~p~i  115 (211)
                      .+.+.-....+.+.|++||...+.-|...+.+++++|||+++++.+..       ..+..-+..+.....    .+.++|
T Consensus       187 e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsii  266 (354)
T KOG0082|consen  187 EVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSII  266 (354)
T ss_pred             EEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEE
Confidence            344444446788999999999999999999999999999999875432       223333333333332    579999


Q ss_pred             EEEecCCCCCC--------------C-CCCHHHHHHHHHH----------cCCcEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 028251          116 LVGNKCDLAHR--------------R-AVSKEEGEQFAKE----------NGLLFLEASARTAQNVEEAFIKTAAKILQN  170 (211)
Q Consensus       116 vv~nK~Dl~~~--------------~-~~~~~~~~~~~~~----------~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~  170 (211)
                      +++||.|+-++              . ....+++..+...          ..+.+..+.|.+..+|+.+|..+.+.+...
T Consensus       267 LFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~  346 (354)
T KOG0082|consen  267 LFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQN  346 (354)
T ss_pred             EEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHH
Confidence            99999998322              1 1233444333322          134467789999999999999999888776


Q ss_pred             Hhh
Q 028251          171 IQE  173 (211)
Q Consensus       171 ~~~  173 (211)
                      +-.
T Consensus       347 nlk  349 (354)
T KOG0082|consen  347 NLK  349 (354)
T ss_pred             HHH
Confidence            643

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.30  E-value=2.8e-10  Score=91.57  Aligned_cols=161  Identities=17%  Similarity=0.217  Sum_probs=96.8

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCC--------------CCee-------eEE---EEEEEEE-CCEEEEEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD--------------LTIG-------VEF---GARMVTI-DGRPIKLQI   59 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~--------------~~~~-------~~~---~~~~~~~-~~~~~~l~l   59 (211)
                      ..+.|.|+|+.++|||||+|+|.+.-..+...              ...|       +-+   ....+.. ++....+.+
T Consensus        16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl   95 (492)
T TIGR02836        16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL   95 (492)
T ss_pred             CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence            46889999999999999999999882211111              1112       112   2222322 556678899


Q ss_pred             EeCCCccchhh-----------------------------chHHHhc-cccEEEEEE-ECC--C--HH-HHHHHHHHHHH
Q 028251           60 WDTAGQESFRS-----------------------------ITRSYYR-GAAGALLVY-DIT--R--RE-TFNHLSSWLED  103 (211)
Q Consensus        60 ~D~~G~~~~~~-----------------------------~~~~~~~-~~d~~i~v~-d~~--~--~~-~~~~~~~~~~~  103 (211)
                      +||+|...-.+                             -+...+. .+|..|+|. |.+  +  ++ ....-..++..
T Consensus        96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e  175 (492)
T TIGR02836        96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE  175 (492)
T ss_pred             EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence            99999321111                             1344455 889888888 663  1  11 22334456666


Q ss_pred             HHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Q 028251          104 ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ  172 (211)
Q Consensus       104 ~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~~  172 (211)
                      +...   ++|+++++|+.|...+  ...+....+..+.+++++.+|+.+= .-+++ ..|++.++..++
T Consensus       176 Lk~~---~kPfiivlN~~dp~~~--et~~l~~~l~eky~vpvl~v~c~~l-~~~DI-~~il~~vL~EFP  237 (492)
T TIGR02836       176 LKEL---NKPFIILLNSTHPYHP--ETEALRQELEEKYDVPVLAMDVESM-RESDI-LSVLEEVLYEFP  237 (492)
T ss_pred             HHhc---CCCEEEEEECcCCCCc--hhHHHHHHHHHHhCCceEEEEHHHc-CHHHH-HHHHHHHHhcCC
Confidence            6654   8999999999994322  1344455666667888888887642 33332 344455554444

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.29  E-value=1.1e-10  Score=96.72  Aligned_cols=160  Identities=16%  Similarity=0.290  Sum_probs=109.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEEC--CEEEEEEEEeCCCccchhhchHHHhcccc----
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID--GRPIKLQIWDTAGQESFRSITRSYYRGAA----   80 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~l~D~~G~~~~~~~~~~~~~~~d----   80 (211)
                      -.|+|+|..++|||||+.+|.+..   ...++.+.+|....+.-+  ....++.+|...|...+..+....+....    
T Consensus        26 k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t  102 (472)
T PF05783_consen   26 KSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNT  102 (472)
T ss_pred             ceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccce
Confidence            479999999999999999987543   334455666655544322  22357899999887777777766664433    


Q ss_pred             EEEEEEECCCHHHH-HHHHHHHH-------------------------HHHHhcC-------------------------
Q 028251           81 GALLVYDITRRETF-NHLSSWLE-------------------------DARQHAN-------------------------  109 (211)
Q Consensus        81 ~~i~v~d~~~~~~~-~~~~~~~~-------------------------~~~~~~~-------------------------  109 (211)
                      .+|+|+|.+.|..+ +.+..|+.                         .++.+.+                         
T Consensus       103 ~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~  182 (472)
T PF05783_consen  103 LVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESV  182 (472)
T ss_pred             EEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccccc
Confidence            78899999998654 34444433                         1111100                         


Q ss_pred             ------------CCCeEEEEEecCCCCC----CCCCC-------HHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHH
Q 028251          110 ------------PNMSIMLVGNKCDLAH----RRAVS-------KEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK  166 (211)
Q Consensus       110 ------------~~~p~ivv~nK~Dl~~----~~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~  166 (211)
                                  -++|++||.+|+|...    +....       ..-++.+|..+|+.++.+|++...+++-++.+|.+.
T Consensus       183 ~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~  262 (472)
T PF05783_consen  183 LLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHR  262 (472)
T ss_pred             cCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHH
Confidence                        1479999999999732    11111       123567888899999999999999999888888777


Q ss_pred             HHH
Q 028251          167 ILQ  169 (211)
Q Consensus       167 ~~~  169 (211)
                      +..
T Consensus       263 l~~  265 (472)
T PF05783_consen  263 LYG  265 (472)
T ss_pred             hcc
Confidence            654

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.29  E-value=8.3e-12  Score=92.11  Aligned_cols=145  Identities=19%  Similarity=0.307  Sum_probs=87.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECC-EEEEEEEEeCCCccchhh-----chHHHhccc
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDG-RPIKLQIWDTAGQESFRS-----ITRSYYRGA   79 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~D~~G~~~~~~-----~~~~~~~~~   79 (211)
                      .-||+++|.+|+|||++= .+....+..-.....|.++...+-++.. .+..+.+||++|++.+..     .....+.++
T Consensus         4 ~kKvlLMGrsGsGKsSmr-siiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV   82 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMR-SIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNV   82 (295)
T ss_pred             cceEEEeccCCCCccccc-hhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence            458999999999999954 4443333222222234433333333321 246789999999985433     455678899


Q ss_pred             cEEEEEEECCCHHHHHHHHHHHH---HHHHhcCCCCeEEEEEecCCCCCCCC--CCHHHH----HHHHHHcCCcEEEEeC
Q 028251           80 AGALLVYDITRRETFNHLSSWLE---DARQHANPNMSIMLVGNKCDLAHRRA--VSKEEG----EQFAKENGLLFLEASA  150 (211)
Q Consensus        80 d~~i~v~d~~~~~~~~~~~~~~~---~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~----~~~~~~~~~~~~~~s~  150 (211)
                      +++|+|||+...+-..++..+..   .+.+. .+...++++.+|.|+.....  ...++-    ..+....++.++++|.
T Consensus        83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~-SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi  161 (295)
T KOG3886|consen   83 QVLIYVFDVESREMEKDFHYYQKCLEALLQN-SPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI  161 (295)
T ss_pred             eeeeeeeeccchhhhhhHHHHHHHHHHHHhc-CCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence            99999999988765454444333   33332 35777899999999964321  111111    1222223455777776


Q ss_pred             CC
Q 028251          151 RT  152 (211)
Q Consensus       151 ~~  152 (211)
                      .+
T Consensus       162 wD  163 (295)
T KOG3886|consen  162 WD  163 (295)
T ss_pred             hh
Confidence            65

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.29  E-value=5.4e-11  Score=86.27  Aligned_cols=62  Identities=24%  Similarity=0.247  Sum_probs=42.7

Q ss_pred             EEEEeCCCccc----hhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecC
Q 028251           57 LQIWDTAGQES----FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC  121 (211)
Q Consensus        57 l~l~D~~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  121 (211)
                      +.|+|+||...    ....+..+++.+|++|+|.++.+..+......+.......   ...+++|.||+
T Consensus       103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~  168 (168)
T PF00350_consen  103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA  168 (168)
T ss_dssp             EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred             eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence            78999999643    2356778889999999999999865544444444443333   44488888984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.23  E-value=8.7e-11  Score=101.34  Aligned_cols=119  Identities=18%  Similarity=0.187  Sum_probs=89.5

Q ss_pred             CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCC-----C-----------CCCeeeEEEEEEEEECCE-EEEEEEEeCCC
Q 028251            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-----H-----------DLTIGVEFGARMVTIDGR-PIKLQIWDTAG   64 (211)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~-~~~l~l~D~~G   64 (211)
                      ..+..-+|.|+|+-.+|||||..+|+.......     .           ....|.++....+++... ...++++||||
T Consensus         6 ~~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPG   85 (697)
T COG0480           6 PLERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPG   85 (697)
T ss_pred             ccccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCC
Confidence            345678999999999999999999974322111     1           012256666665666555 48899999999


Q ss_pred             ccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCC
Q 028251           65 QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA  124 (211)
Q Consensus        65 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  124 (211)
                      +-.|.......++-+|++|+|+|+...-..+...-|++...    .++|.++++||+|..
T Consensus        86 HVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~----~~vp~i~fiNKmDR~  141 (697)
T COG0480          86 HVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADK----YGVPRILFVNKMDRL  141 (697)
T ss_pred             ccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhh----cCCCeEEEEECcccc
Confidence            99999999999999999999999998655444445544333    389999999999963

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.22  E-value=4.5e-10  Score=87.75  Aligned_cols=159  Identities=16%  Similarity=0.204  Sum_probs=92.7

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCC-------CCCCCeeeEEEEEEEEE-------CCEEEEEEEEeCCCccchh
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQP-------VHDLTIGVEFGARMVTI-------DGRPIKLQIWDTAGQESFR   69 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~-------~~~~~~~~~~~~~~~~~-------~~~~~~l~l~D~~G~~~~~   69 (211)
                      ...+++.++|+..+|||||.++|..-.-..       ....-.+.+.....+.+       .+...++.++|+||+...-
T Consensus         5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI   84 (522)
T KOG0461|consen    5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI   84 (522)
T ss_pred             CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence            456999999999999999999997432211       11111222222222222       3556788999999997666


Q ss_pred             hchHHHhccccEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCeEEEEEecCCCCCCCC--CCHHHH-HHHHHH-----
Q 028251           70 SITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKCDLAHRRA--VSKEEG-EQFAKE-----  140 (211)
Q Consensus        70 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~-~~~~~~-----  140 (211)
                      +....-..-.|..++|+|+...-.-+.... .+-.+.     -...+||+||.|...+.+  ...+.. .+..+.     
T Consensus        85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~-----c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~  159 (522)
T KOG0461|consen   85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL-----CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTG  159 (522)
T ss_pred             HHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh-----ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcC
Confidence            555555566789999999976432222211 222222     234677788888744321  111222 122111     


Q ss_pred             --cCCcEEEEeCCCC----CCHHHHHHHHHHHH
Q 028251          141 --NGLLFLEASARTA----QNVEEAFIKTAAKI  167 (211)
Q Consensus       141 --~~~~~~~~s~~~~----~~i~~~~~~i~~~~  167 (211)
                        -+.|++++|+++|    ..+.++.+.|...+
T Consensus       160 f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~i  192 (522)
T KOG0461|consen  160 FDGNSPIVEVSAADGYFKEEMIQELKEALESRI  192 (522)
T ss_pred             cCCCCceeEEecCCCccchhHHHHHHHHHHHhh
Confidence              2368999999999    55555544444444

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.21  E-value=6.1e-10  Score=87.07  Aligned_cols=141  Identities=18%  Similarity=0.254  Sum_probs=75.3

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCC----------CCCeeeEEEEEEEEECCEEEEEEEEeCCCccc-------
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH----------DLTIGVEFGARMVTIDGRPIKLQIWDTAGQES-------   67 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~-------   67 (211)
                      ..++|+|+|..|+|||||+|.|++.......          ..+.........+.-++..+.+.++||||...       
T Consensus         3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~   82 (281)
T PF00735_consen    3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC   82 (281)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence            3689999999999999999999977554332          12223333333455578889999999999221       


Q ss_pred             -----------hhhc--------h-HHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCC
Q 028251           68 -----------FRSI--------T-RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR  127 (211)
Q Consensus        68 -----------~~~~--------~-~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  127 (211)
                                 +...        + ...=..+|+++|.++.+... +..+  -+..+++.. ..+++|-|+.|+|.....
T Consensus        83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~-L~~~--Di~~mk~Ls-~~vNvIPvIaKaD~lt~~  158 (281)
T PF00735_consen   83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHG-LKPL--DIEFMKRLS-KRVNVIPVIAKADTLTPE  158 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSS-S-HH--HHHHHHHHT-TTSEEEEEESTGGGS-HH
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCcc-chHH--HHHHHHHhc-ccccEEeEEecccccCHH
Confidence                       0000        0 00013467999999986532 1111  122334433 378999999999985422


Q ss_pred             CC--CHHHHHHHHHHcCCcEEEEe
Q 028251          128 AV--SKEEGEQFAKENGLLFLEAS  149 (211)
Q Consensus       128 ~~--~~~~~~~~~~~~~~~~~~~s  149 (211)
                      ++  ..+.+......+++.++...
T Consensus       159 el~~~k~~i~~~l~~~~I~~f~f~  182 (281)
T PF00735_consen  159 ELQAFKQRIREDLEENNIKIFDFP  182 (281)
T ss_dssp             HHHHHHHHHHHHHHHTT--S----
T ss_pred             HHHHHHHHHHHHHHHcCceeeccc
Confidence            21  11223344455777766543

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>smart00053 DYNc Dynamin, GTPase

Probab=99.19  E-value=3.8e-10  Score=85.98  Aligned_cols=118  Identities=16%  Similarity=0.187  Sum_probs=68.9

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCee-----e------EEEEEEE-------------------------
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIG-----V------EFGARMV-------------------------   48 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~-----~------~~~~~~~-------------------------   48 (211)
                      ..++++|+|+.|+||||+++.+.+..+.+.....++     .      ......+                         
T Consensus        25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~  104 (240)
T smart00053       25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT  104 (240)
T ss_pred             CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence            456899999999999999999998753222111100     0      0000001                         


Q ss_pred             -------------EECCE-EEEEEEEeCCCccc-------------hhhchHHHhc-cccEEEEEEECCCHHHHHHHHHH
Q 028251           49 -------------TIDGR-PIKLQIWDTAGQES-------------FRSITRSYYR-GAAGALLVYDITRRETFNHLSSW  100 (211)
Q Consensus        49 -------------~~~~~-~~~l~l~D~~G~~~-------------~~~~~~~~~~-~~d~~i~v~d~~~~~~~~~~~~~  100 (211)
                                   .+.+. ...+.++|+||...             ...+...|++ ..+.+++|+|+.....-.....+
T Consensus       105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~i  184 (240)
T smart00053      105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKL  184 (240)
T ss_pred             CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHH
Confidence                         11110 13578999999642             1124566777 44588999988653221111122


Q ss_pred             HHHHHHhcCCCCeEEEEEecCCCCC
Q 028251          101 LEDARQHANPNMSIMLVGNKCDLAH  125 (211)
Q Consensus       101 ~~~~~~~~~~~~p~ivv~nK~Dl~~  125 (211)
                      ...+.   ..+.|+++|+||.|..+
T Consensus       185 a~~ld---~~~~rti~ViTK~D~~~  206 (240)
T smart00053      185 AKEVD---PQGERTIGVITKLDLMD  206 (240)
T ss_pred             HHHHH---HcCCcEEEEEECCCCCC
Confidence            22222   24789999999999865

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.19  E-value=2.3e-10  Score=94.59  Aligned_cols=153  Identities=20%  Similarity=0.219  Sum_probs=105.9

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCC-----------------------------CCCCCCCeeeEEEEEEEEECCEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRF-----------------------------QPVHDLTIGVEFGARMVTIDGRPI   55 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~   55 (211)
                      ..+..+++|+..+|||||+-+|+..--                             ........|++..+....++-...
T Consensus       176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~  255 (603)
T KOG0458|consen  176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK  255 (603)
T ss_pred             cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence            457899999999999999999863211                             011122347777888888887788


Q ss_pred             EEEEEeCCCccchhhchHHHhccccEEEEEEECCCHH---HHH---HHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC
Q 028251           56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE---TFN---HLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV  129 (211)
Q Consensus        56 ~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~  129 (211)
                      .+.|.|+||+..|-.....-..++|+.|+|+|++-.+   .|+   +.+.....++...  -..++|++||+|+.+-.+-
T Consensus       256 ~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg--i~qlivaiNKmD~V~Wsq~  333 (603)
T KOG0458|consen  256 IVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG--ISQLIVAINKMDLVSWSQD  333 (603)
T ss_pred             eEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC--cceEEEEeecccccCccHH
Confidence            8999999999999888888889999999999997532   121   1222222223332  5668899999999764333


Q ss_pred             CHHHHH----HHH-HHcC-----CcEEEEeCCCCCCHHHH
Q 028251          130 SKEEGE----QFA-KENG-----LLFLEASARTAQNVEEA  159 (211)
Q Consensus       130 ~~~~~~----~~~-~~~~-----~~~~~~s~~~~~~i~~~  159 (211)
                      ..+++.    .|. +..|     +.|+++|...|.|+...
T Consensus       334 RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  334 RFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             HHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence            333333    233 2233     45999999999998765

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.18  E-value=1.1e-09  Score=92.83  Aligned_cols=120  Identities=15%  Similarity=0.166  Sum_probs=73.5

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCC-CCeeeEEEEEEEEECCEEEEEEEEeCCCccchh-------hc---h
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR-------SI---T   72 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~-------~~---~   72 (211)
                      ++.++|+|+|.+|+||||++|.|++........ ...+..........++  ..+.++||||.....       ..   .
T Consensus       116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~I  193 (763)
T TIGR00993       116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSV  193 (763)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHH
Confidence            456899999999999999999999886443322 2222222222233444  457899999965421       11   2


Q ss_pred             HHHhc--cccEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEecCCCCC
Q 028251           73 RSYYR--GAAGALLVYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAH  125 (211)
Q Consensus        73 ~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~  125 (211)
                      ..++.  ..|++|+|..+........-..++..+.....  .-..+||++++.|..+
T Consensus       194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp  250 (763)
T TIGR00993       194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP  250 (763)
T ss_pred             HHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence            22333  57999999987643222122244555554443  1255788889998754

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.18  E-value=1.5e-10  Score=98.02  Aligned_cols=168  Identities=19%  Similarity=0.191  Sum_probs=108.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEEC------------CE-EE---EEEEEeCCCccchh
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID------------GR-PI---KLQIWDTAGQESFR   69 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------~~-~~---~l~l~D~~G~~~~~   69 (211)
                      .+-++|+|+..+|||-|+..+.+...........+..+....+...            .. .+   .+.++||||++.|.
T Consensus       475 SPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFt  554 (1064)
T KOG1144|consen  475 SPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFT  554 (1064)
T ss_pred             CceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhh
Confidence            4568999999999999999998765443332222222211111111            00 11   36789999999999


Q ss_pred             hchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCC------CCC----------CHHH
Q 028251           70 SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR------RAV----------SKEE  133 (211)
Q Consensus        70 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------~~~----------~~~~  133 (211)
                      .+.......+|.+|+|+|+.+.-.-+.    +..+.-...++.|+||++||+|..-.      ..+          ...+
T Consensus       555 nlRsrgsslC~~aIlvvdImhGlepqt----iESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~E  630 (1064)
T KOG1144|consen  555 NLRSRGSSLCDLAILVVDIMHGLEPQT----IESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNE  630 (1064)
T ss_pred             hhhhccccccceEEEEeehhccCCcch----hHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHH
Confidence            999999999999999999987422111    22223333348999999999996321      000          0011


Q ss_pred             HH--------HHHHH-cC-------------CcEEEEeCCCCCCHHHHHHHHHHHHHHHHhhcccc
Q 028251          134 GE--------QFAKE-NG-------------LLFLEASARTAQNVEEAFIKTAAKILQNIQEGALD  177 (211)
Q Consensus       134 ~~--------~~~~~-~~-------------~~~~~~s~~~~~~i~~~~~~i~~~~~~~~~~~~~~  177 (211)
                      +.        +|+.. ++             +.++++||..|+||-+++.+|+++....+.....-
T Consensus       631 F~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~kl~y  696 (1064)
T KOG1144|consen  631 FKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEKLAY  696 (1064)
T ss_pred             HHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHHHhh
Confidence            11        11111 11             13689999999999999999999988888765543

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.17  E-value=4.7e-10  Score=90.06  Aligned_cols=134  Identities=18%  Similarity=0.136  Sum_probs=92.6

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCC--------------------CCCCeeeEEEEEEEEECCEEEEEEEEeCCC
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV--------------------HDLTIGVEFGARMVTIDGRPIKLQIWDTAG   64 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G   64 (211)
                      .+-..+|+-+|.+|||||...|+--.....                    .....|+.+....+.++.....++|.||||
T Consensus        11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG   90 (528)
T COG4108          11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG   90 (528)
T ss_pred             hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence            445678999999999999999862211110                    001226666666677777788899999999


Q ss_pred             ccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCc
Q 028251           65 QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL  144 (211)
Q Consensus        65 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  144 (211)
                      ++.|..-+-..+..+|..+.|+|+...-.-+ ..++   +.--...+.|++-++||.|-...  -+.++..++.+..++.
T Consensus        91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~q-T~KL---feVcrlR~iPI~TFiNKlDR~~r--dP~ELLdEiE~~L~i~  164 (528)
T COG4108          91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQ-TLKL---FEVCRLRDIPIFTFINKLDREGR--DPLELLDEIEEELGIQ  164 (528)
T ss_pred             ccccchhHHHHHHhhheeeEEEecccCccHH-HHHH---HHHHhhcCCceEEEeeccccccC--ChHHHHHHHHHHhCcc
Confidence            9999988888888999999999997753211 1222   22222358999999999997543  3456666665555443

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.15  E-value=3.7e-10  Score=89.46  Aligned_cols=104  Identities=15%  Similarity=0.035  Sum_probs=64.1

Q ss_pred             EEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCH--
Q 028251           54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK--  131 (211)
Q Consensus        54 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~--  131 (211)
                      .+.+.|.||+|...   ........+|.++++......   ..+......+     .++|.++++||+|+........  
T Consensus       126 g~D~viidT~G~~~---~e~~i~~~aD~i~vv~~~~~~---~el~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~~~~~  194 (300)
T TIGR00750       126 GYDVIIVETVGVGQ---SEVDIANMADTFVVVTIPGTG---DDLQGIKAGL-----MEIADIYVVNKADGEGATNVTIAR  194 (300)
T ss_pred             CCCEEEEeCCCCch---hhhHHHHhhceEEEEecCCcc---HHHHHHHHHH-----hhhccEEEEEcccccchhHHHHHH
Confidence            46788999999542   222456678888877554332   2232322222     2677899999999865322110  


Q ss_pred             HH----HHHHHHH---cCCcEEEEeCCCCCCHHHHHHHHHHHHH
Q 028251          132 EE----GEQFAKE---NGLLFLEASARTAQNVEEAFIKTAAKIL  168 (211)
Q Consensus       132 ~~----~~~~~~~---~~~~~~~~s~~~~~~i~~~~~~i~~~~~  168 (211)
                      ..    ...+...   ...+++++|++++.|+++++++|.+...
T Consensus       195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence            00    0111111   2246999999999999999999988754

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.14  E-value=2.8e-10  Score=82.35  Aligned_cols=149  Identities=17%  Similarity=0.091  Sum_probs=89.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEE-----------------EE----EEE--------------C
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGA-----------------RM----VTI--------------D   51 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~-----------------~~----~~~--------------~   51 (211)
                      +.|.|.|++|||||+|+.+++..-.......-++.+.+.                 ..    .+.              .
T Consensus        14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~~   93 (202)
T COG0378          14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVLD   93 (202)
T ss_pred             EEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhhc
Confidence            789999999999999999876432111100000111110                 00    000              1


Q ss_pred             CEEEEEEEEeCCCccchhhchHHHhcccc-EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCC
Q 028251           52 GRPIKLQIWDTAGQESFRSITRSYYRGAA-GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS  130 (211)
Q Consensus        52 ~~~~~l~l~D~~G~~~~~~~~~~~~~~~d-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~  130 (211)
                      .....+.|++.+| .-.....   +.-.| .-|+|+|....+...  ++-...+      -..-++|+||.|+......+
T Consensus        94 ~~~~Dll~iEs~G-NL~~~~s---p~L~d~~~v~VidvteGe~~P--~K~gP~i------~~aDllVInK~DLa~~v~~d  161 (202)
T COG0378          94 FPDLDLLFIESVG-NLVCPFS---PDLGDHLRVVVIDVTEGEDIP--RKGGPGI------FKADLLVINKTDLAPYVGAD  161 (202)
T ss_pred             CCcCCEEEEecCc-ceecccC---cchhhceEEEEEECCCCCCCc--ccCCCce------eEeeEEEEehHHhHHHhCcc
Confidence            1124566677777 2111111   11234 788899987753210  0000011      11348999999998877777


Q ss_pred             HHHHHHHHHH--cCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 028251          131 KEEGEQFAKE--NGLLFLEASARTAQNVEEAFIKTAAKI  167 (211)
Q Consensus       131 ~~~~~~~~~~--~~~~~~~~s~~~~~~i~~~~~~i~~~~  167 (211)
                      .+...+.+++  .+.+++++|.++|.|++++++++....
T Consensus       162 levm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         162 LEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             HHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence            7887777776  457899999999999999998887654

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=99.12  E-value=1.3e-10  Score=89.90  Aligned_cols=156  Identities=22%  Similarity=0.192  Sum_probs=105.8

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcc---------chhhchHHH
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE---------SFRSITRSY   75 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~---------~~~~~~~~~   75 (211)
                      ...-|.|||..++|||||+++|.+....+...-+-+.+......++...+. +.+.||.|.-         .|.+ +..-
T Consensus       177 s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~-vlltDTvGFisdLP~~LvaAF~A-TLee  254 (410)
T KOG0410|consen  177 SSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNF-VLLTDTVGFISDLPIQLVAAFQA-TLEE  254 (410)
T ss_pred             CCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcE-EEEeechhhhhhCcHHHHHHHHH-HHHH
Confidence            346799999999999999999997766665544445555555566665443 5689999942         2222 2333


Q ss_pred             hccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCe----EEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCC
Q 028251           76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS----IMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASAR  151 (211)
Q Consensus        76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p----~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~  151 (211)
                      ...+|.++.|.|+++|..-.+....+.-+....-+..|    ++=|-||.|........ +         ...-+.+|++
T Consensus       255 VaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~-E---------~n~~v~isal  324 (410)
T KOG0410|consen  255 VAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEE-E---------KNLDVGISAL  324 (410)
T ss_pred             HhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCcc-c---------cCCccccccc
Confidence            56899999999999997666666665656555433333    34456777764422111 1         1126779999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHh
Q 028251          152 TAQNVEEAFIKTAAKILQNIQ  172 (211)
Q Consensus       152 ~~~~i~~~~~~i~~~~~~~~~  172 (211)
                      +|+|++++...+-..+.....
T Consensus       325 tgdgl~el~~a~~~kv~~~t~  345 (410)
T KOG0410|consen  325 TGDGLEELLKAEETKVASETT  345 (410)
T ss_pred             cCccHHHHHHHHHHHhhhhhe
Confidence            999999999888887766554

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.09  E-value=6.4e-10  Score=85.12  Aligned_cols=169  Identities=18%  Similarity=0.155  Sum_probs=110.8

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCC----------CC----CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKR----------FQ----PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS   70 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~----------~~----~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~   70 (211)
                      ..++|..+|+..-|||||..++..-.          +.    .......|+++....+.++-.+..+..+|+||+..|-.
T Consensus        11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYvK   90 (394)
T COG0050          11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYVK   90 (394)
T ss_pred             CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHHH
Confidence            45899999999999999998875211          11    11223457888888888887788899999999999998


Q ss_pred             chHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeE-EEEEecCCCCCCCCCC---HHHHHHHHHHcCC---
Q 028251           71 ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSI-MLVGNKCDLAHRRAVS---KEEGEQFAKENGL---  143 (211)
Q Consensus        71 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~~---  143 (211)
                      +...-..+.|+.|+|+++.|..- .+.+.-+...++   -+.|. ++++||+|+.++.++.   ..+.+.+..++++   
T Consensus        91 NMItgAaqmDgAILVVsA~dGpm-PqTrEHiLlarq---vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~gd  166 (394)
T COG0050          91 NMITGAAQMDGAILVVAATDGPM-PQTREHILLARQ---VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPGD  166 (394)
T ss_pred             HHhhhHHhcCccEEEEEcCCCCC-Ccchhhhhhhhh---cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCCC
Confidence            88878889999999999998432 111121112122   26764 5568999997644322   2345566666655   


Q ss_pred             --cEEEEeCCCCC----CHHHHHHHHHHHHHHHHhhcccc
Q 028251          144 --LFLEASARTAQ----NVEEAFIKTAAKILQNIQEGALD  177 (211)
Q Consensus       144 --~~~~~s~~~~~----~i~~~~~~i~~~~~~~~~~~~~~  177 (211)
                        |++.-|++...    ...+....|++++.+..+.+...
T Consensus       167 ~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per~  206 (394)
T COG0050         167 DTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPERD  206 (394)
T ss_pred             CcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCCc
Confidence              47777766432    23334455556665555544443

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=99.09  E-value=1.1e-09  Score=91.94  Aligned_cols=117  Identities=21%  Similarity=0.273  Sum_probs=84.5

Q ss_pred             CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCC---------------eeeEEEEE--EE---EECCEEEEEEEEeC
Q 028251            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT---------------IGVEFGAR--MV---TIDGRPIKLQIWDT   62 (211)
Q Consensus         3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~---------------~~~~~~~~--~~---~~~~~~~~l~l~D~   62 (211)
                      .+...+|+++|+-+.|||+|+..|..+..+......               .|..+...  ++   ...++.+-+++.||
T Consensus       125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT  204 (971)
T KOG0468|consen  125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT  204 (971)
T ss_pred             cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence            346788999999999999999999866543321110               01222111  11   12556677899999


Q ss_pred             CCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCC
Q 028251           63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL  123 (211)
Q Consensus        63 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  123 (211)
                      ||+-.|.....+.++.+|++++|+|+.+.-.+...+.....++    .+.|+.+|+||.|.
T Consensus       205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq----~~~~i~vviNKiDR  261 (971)
T KOG0468|consen  205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ----NRLPIVVVINKVDR  261 (971)
T ss_pred             CCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHh----ccCcEEEEEehhHH
Confidence            9999999999999999999999999988766554433333332    38999999999995

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.08  E-value=9.2e-09  Score=81.69  Aligned_cols=84  Identities=23%  Similarity=0.205  Sum_probs=59.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECC----------------EEEEEEEEeCCCc----
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDG----------------RPIKLQIWDTAGQ----   65 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~l~l~D~~G~----   65 (211)
                      .+++.|||-|++|||||+|+++.......-.|+.+++.......+..                ....+.++|++|.    
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            37899999999999999999998886545555545555444433321                2346889999993    


Q ss_pred             ---cchhhchHHHhccccEEEEEEECC
Q 028251           66 ---ESFRSITRSYYRGAAGALLVYDIT   89 (211)
Q Consensus        66 ---~~~~~~~~~~~~~~d~~i~v~d~~   89 (211)
                         +-....-.+-++++|+++.|+++.
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence               223333445568999999999864

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.07  E-value=2.9e-09  Score=84.02  Aligned_cols=162  Identities=15%  Similarity=0.253  Sum_probs=93.1

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCC----------CCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh----
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV----------HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS----   70 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~----   70 (211)
                      ..++|+++|+.|.|||||+|.|++......          ..++.....+...+.-++..+.+.+.||||...+-.    
T Consensus        22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~  101 (373)
T COG5019          22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC  101 (373)
T ss_pred             CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence            468999999999999999999998743222          123334445555555578888999999999321111    


Q ss_pred             ----------chHHH------------h--ccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCC
Q 028251           71 ----------ITRSY------------Y--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR  126 (211)
Q Consensus        71 ----------~~~~~------------~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  126 (211)
                                ....|            +  ..+|+++|.+..+... +..+.  +..+.+.. ..+.+|-|+.|+|....
T Consensus       102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~-l~~~D--Ie~Mk~ls-~~vNlIPVI~KaD~lT~  177 (373)
T COG5019         102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHG-LKPLD--IEAMKRLS-KRVNLIPVIAKADTLTD  177 (373)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCC-CCHHH--HHHHHHHh-cccCeeeeeeccccCCH
Confidence                      01111            1  2256777777765432 11111  12223333 36789999999998442


Q ss_pred             CCC--CHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Q 028251          127 RAV--SKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ  172 (211)
Q Consensus       127 ~~~--~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~~  172 (211)
                      .+.  -.+.+.+....+++++|.  ..+.+.-.+-.....+.+....|
T Consensus       178 ~El~~~K~~I~~~i~~~nI~vf~--pyd~e~~~~e~~e~~~~l~~~~P  223 (373)
T COG5019         178 DELAEFKERIREDLEQYNIPVFD--PYDPEDDEDESLEENQDLRSLIP  223 (373)
T ss_pred             HHHHHHHHHHHHHHHHhCCceeC--CCCccccchhhHHHHHHHhhcCC
Confidence            221  223345566668888885  34444432222233444444343

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.07  E-value=1.1e-08  Score=76.89  Aligned_cols=86  Identities=23%  Similarity=0.200  Sum_probs=65.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccch-------hhchHHHhcc
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF-------RSITRSYYRG   78 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~-------~~~~~~~~~~   78 (211)
                      ..+|+++|.|.+|||||+..+..-........+++.+.-...+++++..  +++.|.||.-.-       .....+..+.
T Consensus        62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~--IQllDLPGIieGAsqgkGRGRQviavArt  139 (364)
T KOG1486|consen   62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGAN--IQLLDLPGIIEGASQGKGRGRQVIAVART  139 (364)
T ss_pred             CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCce--EEEecCcccccccccCCCCCceEEEEeec
Confidence            4689999999999999999998666555555565777777778888876  568999994322       2234456788


Q ss_pred             ccEEEEEEECCCHHH
Q 028251           79 AAGALLVYDITRRET   93 (211)
Q Consensus        79 ~d~~i~v~d~~~~~~   93 (211)
                      +|.+++|.|++..+.
T Consensus       140 aDlilMvLDatk~e~  154 (364)
T KOG1486|consen  140 ADLILMVLDATKSED  154 (364)
T ss_pred             ccEEEEEecCCcchh
Confidence            999999999987544

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.04  E-value=4e-09  Score=85.00  Aligned_cols=157  Identities=17%  Similarity=0.067  Sum_probs=106.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCCCCC-CCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      .|+..|+-.-|||||++.+.+...... ....-|++........+..+..+.|+|.||++++-......+...|..++|+
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV   81 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV   81 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence            578889999999999999987654321 1122345555554555555557899999999999888888888999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHH---HcCCcEEEEeCCCCCCHHHHHHHH
Q 028251           87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK---ENGLLFLEASARTAQNVEEAFIKT  163 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~~~~i~~~~~~i  163 (211)
                      +.++.-..+.. ..+.-+....  ....+||++|+|..++.++. +..++...   ..+.+++.+|+.+|.||+++-+.|
T Consensus        82 ~~deGl~~qtg-EhL~iLdllg--i~~giivltk~D~~d~~r~e-~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l  157 (447)
T COG3276          82 AADEGLMAQTG-EHLLILDLLG--IKNGIIVLTKADRVDEARIE-QKIKQILADLSLANAKIFKTSAKTGRGIEELKNEL  157 (447)
T ss_pred             eCccCcchhhH-HHHHHHHhcC--CCceEEEEeccccccHHHHH-HHHHHHHhhcccccccccccccccCCCHHHHHHHH
Confidence            99764322211 1112222221  34469999999997644221 22222222   245678999999999999999999


Q ss_pred             HHHHH
Q 028251          164 AAKIL  168 (211)
Q Consensus       164 ~~~~~  168 (211)
                      ....-
T Consensus       158 ~~L~~  162 (447)
T COG3276         158 IDLLE  162 (447)
T ss_pred             HHhhh
Confidence            88874

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=99.03  E-value=1.6e-09  Score=80.68  Aligned_cols=150  Identities=17%  Similarity=0.224  Sum_probs=84.1

Q ss_pred             CCCCceeeEEEEcCCCCCHHHHHHHHHhCCCCC---------CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc----
Q 028251            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQP---------VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES----   67 (211)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~----   67 (211)
                      |..-..++|+|||++|.|||||+|+|.......         ....++........+.-++...++.+.||||...    
T Consensus        41 mk~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN  120 (336)
T KOG1547|consen   41 MKTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINN  120 (336)
T ss_pred             HhccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCc
Confidence            444567999999999999999999997543322         1222333333333444577778899999999321    


Q ss_pred             ----------------------hhhchHHHhcc--ccEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEecCC
Q 028251           68 ----------------------FRSITRSYYRG--AAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCD  122 (211)
Q Consensus        68 ----------------------~~~~~~~~~~~--~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D  122 (211)
                                            ........++.  +++++|.+..+.. ++..+. .++..+.+    -..++-|+-|+|
T Consensus       121 ~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt~----vvNvvPVIakaD  195 (336)
T KOG1547|consen  121 DNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLTE----VVNVVPVIAKAD  195 (336)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHhh----hheeeeeEeecc
Confidence                                  11112222333  4456666655432 222221 22223322    456788888999


Q ss_pred             CCC--CCCCCHHHHHHHHHHcCCcEEEEeCCCCCC
Q 028251          123 LAH--RRAVSKEEGEQFAKENGLLFLEASARTAQN  155 (211)
Q Consensus       123 l~~--~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  155 (211)
                      ...  ++..-.+.+++-...+++.+++-.+.+.+.
T Consensus       196 tlTleEr~~FkqrI~~el~~~~i~vYPq~~fded~  230 (336)
T KOG1547|consen  196 TLTLEERSAFKQRIRKELEKHGIDVYPQDSFDEDL  230 (336)
T ss_pred             cccHHHHHHHHHHHHHHHHhcCcccccccccccch
Confidence            632  111112233444455788888876666543

>cd01900 YchF YchF subfamily

Probab=99.02  E-value=9.9e-10  Score=85.30  Aligned_cols=81  Identities=21%  Similarity=0.146  Sum_probs=55.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCE---------------EEEEEEEeCCCccchh----
Q 028251            9 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGR---------------PIKLQIWDTAGQESFR----   69 (211)
Q Consensus         9 i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~l~l~D~~G~~~~~----   69 (211)
                      |+++|.|++|||||+|+|++........+.++.+.....+.+.+.               ...+.++|+||.-.-.    
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            579999999999999999988775444454454555544555443               2358999999943211    


Q ss_pred             h---chHHHhccccEEEEEEECC
Q 028251           70 S---ITRSYYRGAAGALLVYDIT   89 (211)
Q Consensus        70 ~---~~~~~~~~~d~~i~v~d~~   89 (211)
                      .   .....++.+|++++|+|+.
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCc
Confidence            1   2223457899999999863

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>cd01855 YqeH YqeH

Probab=99.02  E-value=3.5e-09  Score=78.44  Aligned_cols=93  Identities=24%  Similarity=0.171  Sum_probs=65.2

Q ss_pred             hhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHH-----HHcC
Q 028251           68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFA-----KENG  142 (211)
Q Consensus        68 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~  142 (211)
                      +...+..+++.+|++++|+|+.++..     .|...+... ..+.|+++|+||+|+..... ..+....+.     ...+
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~-~~~~~~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~   96 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLF-GGNNPVILVGNKIDLLPKDK-NLVRIKNWLRAKAAAGLG   96 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHh-cCCCcEEEEEEchhcCCCCC-CHHHHHHHHHHHHHhhcC
Confidence            56778888999999999999987542     122222222 23689999999999964332 233333333     2233


Q ss_pred             C---cEEEEeCCCCCCHHHHHHHHHHHH
Q 028251          143 L---LFLEASARTAQNVEEAFIKTAAKI  167 (211)
Q Consensus       143 ~---~~~~~s~~~~~~i~~~~~~i~~~~  167 (211)
                      .   .++.+||+++.|++++++.|.+.+
T Consensus        97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l  124 (190)
T cd01855          97 LKPKDVILISAKKGWGVEELINAIKKLA  124 (190)
T ss_pred             CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence            3   589999999999999999988776

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=99.00  E-value=5.7e-09  Score=85.66  Aligned_cols=115  Identities=20%  Similarity=0.222  Sum_probs=76.9

Q ss_pred             EEEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHH-------HHHHHHHHHHHHHhc----CCCCeEEEEEecC
Q 028251           53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET-------FNHLSSWLEDARQHA----NPNMSIMLVGNKC  121 (211)
Q Consensus        53 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~-------~~~~~~~~~~~~~~~----~~~~p~ivv~nK~  121 (211)
                      ....+.++|++|+...+.-|..++..++++|||+++++.+.       ...+..-+..+....    -.+.|++|++||.
T Consensus       234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~  313 (389)
T PF00503_consen  234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI  313 (389)
T ss_dssp             TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred             cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence            44567899999999999999999999999999999865322       122333333332222    2589999999999


Q ss_pred             CCCC-----C-----------C--CCCHHHHHHHHHH------------cCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 028251          122 DLAH-----R-----------R--AVSKEEGEQFAKE------------NGLLFLEASARTAQNVEEAFIKTAAKI  167 (211)
Q Consensus       122 Dl~~-----~-----------~--~~~~~~~~~~~~~------------~~~~~~~~s~~~~~~i~~~~~~i~~~~  167 (211)
                      |+-.     .           .  ....+.+..+...            ..+.+..++|.+..++..+|+.+.+.+
T Consensus       314 D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i  389 (389)
T PF00503_consen  314 DLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII  389 (389)
T ss_dssp             HHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence            9621     0           1  1234555544443            112366899999999999998887653

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.99  E-value=6.7e-09  Score=82.51  Aligned_cols=161  Identities=17%  Similarity=0.249  Sum_probs=95.6

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCC---------CCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh-----
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV---------HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS-----   70 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~-----   70 (211)
                      ..++++++|+.|.|||||+|.|+...+...         ...+.........+.-++..++|.+.||||....-.     
T Consensus        20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w   99 (366)
T KOG2655|consen   20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW   99 (366)
T ss_pred             CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence            358999999999999999999987754432         122334445555555578888999999999321110     


Q ss_pred             --------------------chHHHhc--cccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCC
Q 028251           71 --------------------ITRSYYR--GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA  128 (211)
Q Consensus        71 --------------------~~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  128 (211)
                                          +.+..+.  .+|+++|.+...... +..+.  +..+.... ..+.+|-|+.|+|.....+
T Consensus       100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghg-L~p~D--i~~Mk~l~-~~vNiIPVI~KaD~lT~~E  175 (366)
T KOG2655|consen  100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHG-LKPLD--IEFMKKLS-KKVNLIPVIAKADTLTKDE  175 (366)
T ss_pred             hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCC-CcHhh--HHHHHHHh-ccccccceeeccccCCHHH
Confidence                                1111222  466888888765431 11111  12222222 3788999999999854322


Q ss_pred             C--CHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Q 028251          129 V--SKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ  172 (211)
Q Consensus       129 ~--~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~~  172 (211)
                      .  ....+.+....+++++|....-..   ++.+....+.+....|
T Consensus       176 l~~~K~~I~~~i~~~nI~vf~fp~~~~---d~~~~~~~~~l~~~~P  218 (366)
T KOG2655|consen  176 LNQFKKRIRQDIEEHNIKVFDFPTDES---DEELKEEEQDLKSSIP  218 (366)
T ss_pred             HHHHHHHHHHHHHHcCcceecCCCCcc---hhhhHHHHHHHhhcCC
Confidence            1  223345566667888776554433   4444455555555444

>PRK12289 GTPase RsgA; Reviewed

Probab=98.98  E-value=2.2e-09  Score=86.31  Aligned_cols=91  Identities=22%  Similarity=0.227  Sum_probs=66.2

Q ss_pred             hchHHHhccccEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEE
Q 028251           70 SITRSYYRGAAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEA  148 (211)
Q Consensus        70 ~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  148 (211)
                      .+....+.++|.+++|+|+.++. ....+..|+.....   .+.|+++|+||+|+.....  .+.........++.++++
T Consensus        81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~--~~~~~~~~~~~g~~v~~i  155 (352)
T PRK12289         81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTE--QQQWQDRLQQWGYQPLFI  155 (352)
T ss_pred             ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHH--HHHHHHHHHhcCCeEEEE
Confidence            34555688999999999998865 34455666655432   3799999999999964221  122233445678899999


Q ss_pred             eCCCCCCHHHHHHHHHH
Q 028251          149 SARTAQNVEEAFIKTAA  165 (211)
Q Consensus       149 s~~~~~~i~~~~~~i~~  165 (211)
                      |++++.|++++++.|..
T Consensus       156 SA~tg~GI~eL~~~L~~  172 (352)
T PRK12289        156 SVETGIGLEALLEQLRN  172 (352)
T ss_pred             EcCCCCCHHHHhhhhcc
Confidence            99999999999888754

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.98  E-value=3.1e-09  Score=87.50  Aligned_cols=161  Identities=21%  Similarity=0.387  Sum_probs=116.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+|+.|||..++|||+|+++++.+.+.+...+- +..+... +.+++....+.+.|.+|..     ...|...+|++|||
T Consensus        30 elk~givg~~~sgktalvhr~ltgty~~~e~~e-~~~~kkE-~vv~gqs~lLlirdeg~~~-----~aQft~wvdavIfv  102 (749)
T KOG0705|consen   30 ELKLGIVGTSQSGKTALVHRYLTGTYTQDESPE-GGRFKKE-VVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVVFV  102 (749)
T ss_pred             hhheeeeecccCCceeeeeeeccceeccccCCc-Cccceee-EEeeccceEeeeecccCCc-----hhhhhhhccceEEE
Confidence            479999999999999999999988886655444 4455443 5577777778888888832     33455679999999


Q ss_pred             EECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCC--CCCCHHHHHHH-HHHcCCcEEEEeCCCCCCHHHHHH
Q 028251           86 YDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHR--RAVSKEEGEQF-AKENGLLFLEASARTAQNVEEAFI  161 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~i~~~~~  161 (211)
                      |.+.+..+++.+..+...+..+.. ...|+++++++.-....  +.+......++ +......+|++++..|.+++.+|+
T Consensus       103 f~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~  182 (749)
T KOG0705|consen  103 FSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQ  182 (749)
T ss_pred             EEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHHH
Confidence            999999999888777666654432 46777777776544322  22223333333 333556799999999999999999


Q ss_pred             HHHHHHHHHHhh
Q 028251          162 KTAAKILQNIQE  173 (211)
Q Consensus       162 ~i~~~~~~~~~~  173 (211)
                      .+..++......
T Consensus       183 ~~~~k~i~~~~~  194 (749)
T KOG0705|consen  183 EVAQKIVQLRKY  194 (749)
T ss_pred             HHHHHHHHHHhh
Confidence            988887776543

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=98.95  E-value=2.4e-09  Score=83.24  Aligned_cols=56  Identities=16%  Similarity=0.139  Sum_probs=40.2

Q ss_pred             CCeEEEEEecCCCCCCCCCCHHHHHHHHHH--cCCcEEEEeCCCCCCHHHHHHHHHHH
Q 028251          111 NMSIMLVGNKCDLAHRRAVSKEEGEQFAKE--NGLLFLEASARTAQNVEEAFIKTAAK  166 (211)
Q Consensus       111 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~~~~i~~~~~~i~~~  166 (211)
                      ..+-++++||+|+........+...+..+.  .+.+++.+|+++|+|++++.++|.+.
T Consensus       230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            456699999999965322223334444433  35789999999999999999988763

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=98.93  E-value=6.6e-09  Score=80.02  Aligned_cols=111  Identities=15%  Similarity=0.080  Sum_probs=68.5

Q ss_pred             EEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHH
Q 028251           54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE  133 (211)
Q Consensus        54 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~  133 (211)
                      .+.+.|++|.|--.   .--....-+|.+++|.-..-.+..+.+..   .+.+..     -++|+||.|...... ...+
T Consensus       143 G~DvIIVETVGvGQ---sev~I~~~aDt~~~v~~pg~GD~~Q~iK~---GimEia-----Di~vINKaD~~~A~~-a~r~  210 (323)
T COG1703         143 GYDVIIVETVGVGQ---SEVDIANMADTFLVVMIPGAGDDLQGIKA---GIMEIA-----DIIVINKADRKGAEK-AARE  210 (323)
T ss_pred             CCCEEEEEecCCCc---chhHHhhhcceEEEEecCCCCcHHHHHHh---hhhhhh-----heeeEeccChhhHHH-HHHH
Confidence            45678888887532   22344556898888887655544443332   333322     389999999643211 1111


Q ss_pred             HHH---HH----HH--cCCcEEEEeCCCCCCHHHHHHHHHHHHHHHHhhccc
Q 028251          134 GEQ---FA----KE--NGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGAL  176 (211)
Q Consensus       134 ~~~---~~----~~--~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~~~~~~  176 (211)
                      ...   ..    ..  +.-+++.+||.+|.|++++++.|.+.....-..+..
T Consensus       211 l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~sg~~  262 (323)
T COG1703         211 LRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTESGLF  262 (323)
T ss_pred             HHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHhcccc
Confidence            111   11    11  234699999999999999999998887666665544

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.91  E-value=5.5e-09  Score=82.20  Aligned_cols=88  Identities=18%  Similarity=0.127  Sum_probs=66.8

Q ss_pred             hHHHhccccEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeC
Q 028251           72 TRSYYRGAAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASA  150 (211)
Q Consensus        72 ~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~  150 (211)
                      .+.++.++|.+++|+|+.++. ++..+..|+..+...   +.|+++|+||+|+.+..  ............+.+++.+|+
T Consensus        72 ~~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~---~ip~iIVlNK~DL~~~~--~~~~~~~~~~~~g~~v~~vSA  146 (287)
T cd01854          72 EQVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA---GIEPVIVLTKADLLDDE--EEELELVEALALGYPVLAVSA  146 (287)
T ss_pred             ceeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc---CCCEEEEEEHHHCCChH--HHHHHHHHHHhCCCeEEEEEC
Confidence            344588999999999999987 777788887766543   78999999999996531  112223334457889999999


Q ss_pred             CCCCCHHHHHHHHH
Q 028251          151 RTAQNVEEAFIKTA  164 (211)
Q Consensus       151 ~~~~~i~~~~~~i~  164 (211)
                      +++.|+++++..|.
T Consensus       147 ~~g~gi~~L~~~L~  160 (287)
T cd01854         147 KTGEGLDELREYLK  160 (287)
T ss_pred             CCCccHHHHHhhhc
Confidence            99999999887664

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=98.91  E-value=6.8e-10  Score=84.17  Aligned_cols=111  Identities=14%  Similarity=0.083  Sum_probs=65.0

Q ss_pred             EEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHH
Q 028251           55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEG  134 (211)
Q Consensus        55 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~  134 (211)
                      +.+.|++|.|--   +.-.....-+|.+++|....-.+..+.+..   .+.+.     .-++|+||+|.+.... ...+.
T Consensus       122 ~D~IiiETVGvG---QsE~~I~~~aD~~v~v~~Pg~GD~iQ~~Ka---GimEi-----aDi~vVNKaD~~gA~~-~~~~l  189 (266)
T PF03308_consen  122 FDVIIIETVGVG---QSEVDIADMADTVVLVLVPGLGDEIQAIKA---GIMEI-----ADIFVVNKADRPGADR-TVRDL  189 (266)
T ss_dssp             -SEEEEEEESSS---THHHHHHTTSSEEEEEEESSTCCCCCTB-T---THHHH------SEEEEE--SHHHHHH-HHHHH
T ss_pred             CCEEEEeCCCCC---ccHHHHHHhcCeEEEEecCCCccHHHHHhh---hhhhh-----ccEEEEeCCChHHHHH-HHHHH
Confidence            557788887742   223344567999999998766554333322   22222     2399999999643221 12222


Q ss_pred             HHHHHH-------cCCcEEEEeCCCCCCHHHHHHHHHHHHHHHHhhcccc
Q 028251          135 EQFAKE-------NGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALD  177 (211)
Q Consensus       135 ~~~~~~-------~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~~~~~~~  177 (211)
                      +.....       +..+++.+||.++.|++++++.|.+........+...
T Consensus       190 ~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l~~sg~~~  239 (266)
T PF03308_consen  190 RSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYLKESGELE  239 (266)
T ss_dssp             HHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             HHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHcchHH
Confidence            222222       1247999999999999999999887766555544433

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.91  E-value=7e-09  Score=83.42  Aligned_cols=88  Identities=17%  Similarity=0.166  Sum_probs=66.2

Q ss_pred             HhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC-CHHHHHHHHHHcCCcEEEEeCCCC
Q 028251           75 YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV-SKEEGEQFAKENGLLFLEASARTA  153 (211)
Q Consensus        75 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~  153 (211)
                      +..++|.+++|+++....++..+..|+.....   .+.|+++|+||+|+...... ............+++++.+|++++
T Consensus       117 iaANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg  193 (347)
T PRK12288        117 IAANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTG  193 (347)
T ss_pred             EEEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            35679999999999877788888888765542   37899999999999643211 112223344457889999999999


Q ss_pred             CCHHHHHHHHHH
Q 028251          154 QNVEEAFIKTAA  165 (211)
Q Consensus       154 ~~i~~~~~~i~~  165 (211)
                      .|++++++.|..
T Consensus       194 ~GideL~~~L~~  205 (347)
T PRK12288        194 EGLEELEAALTG  205 (347)
T ss_pred             cCHHHHHHHHhh
Confidence            999999988754

>cd01859 MJ1464 MJ1464

Probab=98.90  E-value=5.8e-09  Score=74.74  Aligned_cols=95  Identities=15%  Similarity=0.117  Sum_probs=64.3

Q ss_pred             hhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEE
Q 028251           68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLE  147 (211)
Q Consensus        68 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  147 (211)
                      +..+...+..++|++|+|+|+.++...... .+...+.   ..+.|+++++||+|+.....  ......+....+.+++.
T Consensus         2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~---~~~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~   75 (156)
T cd01859           2 WKRLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVL---ELGKKLLIVLNKADLVPKEV--LEKWKSIKESEGIPVVY   75 (156)
T ss_pred             HHHHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHH---hCCCcEEEEEEhHHhCCHHH--HHHHHHHHHhCCCcEEE
Confidence            345677888899999999999876432221 1211121   23689999999999853211  11122233345678999


Q ss_pred             EeCCCCCCHHHHHHHHHHHHH
Q 028251          148 ASARTAQNVEEAFIKTAAKIL  168 (211)
Q Consensus       148 ~s~~~~~~i~~~~~~i~~~~~  168 (211)
                      +|++++.|++++++.+.+.+.
T Consensus        76 iSa~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          76 VSAKERLGTKILRRTIKELAK   96 (156)
T ss_pred             EEccccccHHHHHHHHHHHHh
Confidence            999999999999988877764

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.87  E-value=7.3e-08  Score=81.44  Aligned_cols=143  Identities=20%  Similarity=0.186  Sum_probs=88.2

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEE--------------------------------------
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGAR--------------------------------------   46 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~--------------------------------------   46 (211)
                      ...||++.|..++||||++|+++..+.-+.....++.-+...                                      
T Consensus       108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~  187 (749)
T KOG0448|consen  108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG  187 (749)
T ss_pred             cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence            467999999999999999999987665444332221111111                                      


Q ss_pred             -----EEEECCE-----EEEEEEEeCCCc---cchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCe
Q 028251           47 -----MVTIDGR-----PIKLQIWDTAGQ---ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS  113 (211)
Q Consensus        47 -----~~~~~~~-----~~~l~l~D~~G~---~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p  113 (211)
                           .+-.+..     .-.+.+.|.||.   ....+-.......+|++|+|.++.+..+.... .++....+   .+..
T Consensus       188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek-~Ff~~vs~---~Kpn  263 (749)
T KOG0448|consen  188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK-QFFHKVSE---EKPN  263 (749)
T ss_pred             cceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH-HHHHHhhc---cCCc
Confidence                 0000111     014678899994   34555566778899999999999876543332 23222222   2455


Q ss_pred             EEEEEecCCCCCCCCCCHHHHHHHHHHcCC--------cEEEEeCC
Q 028251          114 IMLVGNKCDLAHRRAVSKEEGEQFAKENGL--------LFLEASAR  151 (211)
Q Consensus       114 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--------~~~~~s~~  151 (211)
                      ++|+.||+|....++.-.+++.....+..+        .+++||++
T Consensus       264 iFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~  309 (749)
T KOG0448|consen  264 IFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAK  309 (749)
T ss_pred             EEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEecc
Confidence            777789999977665555665554444322        37888865

>PRK00098 GTPase RsgA; Reviewed

Probab=98.87  E-value=9.2e-09  Score=81.40  Aligned_cols=87  Identities=21%  Similarity=0.180  Sum_probs=63.7

Q ss_pred             HHHhccccEEEEEEECCCHHHHHH-HHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCC
Q 028251           73 RSYYRGAAGALLVYDITRRETFNH-LSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASAR  151 (211)
Q Consensus        73 ~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~  151 (211)
                      +.++.++|.+++|+|+.++..... +..|+..+..   .+.|+++|+||+|+.+... ..+.........+++++++|++
T Consensus        75 q~iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~  150 (298)
T PRK00098         75 KLIAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAK  150 (298)
T ss_pred             cceeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCC
Confidence            334689999999999988765433 4566655543   3789999999999963221 1223444555678899999999


Q ss_pred             CCCCHHHHHHHH
Q 028251          152 TAQNVEEAFIKT  163 (211)
Q Consensus       152 ~~~~i~~~~~~i  163 (211)
                      ++.|++++++.+
T Consensus       151 ~g~gi~~L~~~l  162 (298)
T PRK00098        151 EGEGLDELKPLL  162 (298)
T ss_pred             CCccHHHHHhhc
Confidence            999999988765

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.84  E-value=9.1e-09  Score=72.51  Aligned_cols=54  Identities=22%  Similarity=0.283  Sum_probs=39.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCc
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ   65 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~   65 (211)
                      +++++|.+|+|||||+|+|++........ ..+.+.....+.++.   .+.+|||||.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVSA-TPGKTKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCC-CCCcccceEEEEeCC---CEEEEECCCc
Confidence            79999999999999999999887643222 224444455555554   4689999995

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.78  E-value=2.4e-08  Score=72.67  Aligned_cols=56  Identities=27%  Similarity=0.332  Sum_probs=41.3

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCC
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG   64 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G   64 (211)
                      ..++++++|.+++|||||+|+|.+......... .|.+.....+.++.   .+.++||||
T Consensus       116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~-pg~T~~~~~~~~~~---~~~l~DtPG  171 (172)
T cd04178         116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGAT-PGVTKSMQEVHLDK---KVKLLDSPG  171 (172)
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCcccceecCC-CCeEcceEEEEeCC---CEEEEECcC
Confidence            347999999999999999999998765443322 35555555555543   467999999

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd01858 NGP_1 NGP-1

Probab=98.77  E-value=3.1e-08  Score=71.08  Aligned_cols=56  Identities=21%  Similarity=0.271  Sum_probs=39.1

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCC
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG   64 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G   64 (211)
                      ..++|+++|.+|+|||||+|+|.+.........+ |.+.....+..+.   .+.+.||||
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~-g~T~~~~~~~~~~---~~~liDtPG  156 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIP-GETKVWQYITLMK---RIYLIDCPG  156 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCC-CeeEeEEEEEcCC---CEEEEECcC
Confidence            3578999999999999999999987654433322 4444444444432   256999999

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.76  E-value=4.9e-08  Score=69.89  Aligned_cols=114  Identities=17%  Similarity=0.069  Sum_probs=66.0

Q ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Q 028251           80 AGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEA  159 (211)
Q Consensus        80 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~  159 (211)
                      |++++|+|+.++.+...  .++.. ......++|+++|+||+|+.+.... .+....+....+..++.+|++++.|++++
T Consensus         1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L   76 (155)
T cd01849           1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKK   76 (155)
T ss_pred             CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence            78999999988754332  22221 1222247999999999999542211 11112232234556899999999999999


Q ss_pred             HHHHHHHHHHHHhhccc-cccCCCCCeEEeeccCCCCCC
Q 028251          160 FIKTAAKILQNIQEGAL-DAVNDQSGIKVGYGRGQGPSG  197 (211)
Q Consensus       160 ~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  197 (211)
                      .+.+.+......+.... ........+.+-.-++.|+++
T Consensus        77 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~GKst  115 (155)
T cd01849          77 ESAFTKQTNSNLKSYAKDGKLKKSITVGVIGYPNVGKSS  115 (155)
T ss_pred             HHHHHHHhHHHHHHHHhccccccCcEEEEEccCCCCHHH
Confidence            99887765433322111 112233445554445444443

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>cd01856 YlqF YlqF

Probab=98.72  E-value=7.1e-08  Score=70.22  Aligned_cols=92  Identities=14%  Similarity=0.063  Sum_probs=61.3

Q ss_pred             hhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEE
Q 028251           69 RSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEA  148 (211)
Q Consensus        69 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  148 (211)
                      .......+.++|.+++|+|+.++...... .+...   .  .+.|+++++||+|+.+...  .....++....+..++.+
T Consensus        10 ~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~---~--~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~vi~i   81 (171)
T cd01856          10 LRQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKI---L--GNKPRIIVLNKADLADPKK--TKKWLKYFESKGEKVLFV   81 (171)
T ss_pred             HHHHHHHHhhCCEEEEEeeccCccCcCCh-hhHhH---h--cCCCEEEEEehhhcCChHH--HHHHHHHHHhcCCeEEEE
Confidence            34556778899999999999876432111 11111   1  2579999999999953211  111222333344568999


Q ss_pred             eCCCCCCHHHHHHHHHHHHH
Q 028251          149 SARTAQNVEEAFIKTAAKIL  168 (211)
Q Consensus       149 s~~~~~~i~~~~~~i~~~~~  168 (211)
                      |++++.|++++.+.+.+.+.
T Consensus        82 Sa~~~~gi~~L~~~l~~~l~  101 (171)
T cd01856          82 NAKSGKGVKKLLKAAKKLLK  101 (171)
T ss_pred             ECCCcccHHHHHHHHHHHHH
Confidence            99999999999988887764

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.70  E-value=9.6e-08  Score=77.53  Aligned_cols=95  Identities=26%  Similarity=0.319  Sum_probs=69.6

Q ss_pred             ccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHH----HHHHH
Q 028251           65 QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGE----QFAKE  140 (211)
Q Consensus        65 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~----~~~~~  140 (211)
                      .+.+..+...++..++++++|+|+.+..     ..|...+..... +.|+++|+||+|+.... ...+...    +++..
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~-~~piilV~NK~DLl~k~-~~~~~~~~~l~~~~k~  122 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVG-GNPVLLVGNKIDLLPKS-VNLSKIKEWMKKRAKE  122 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhC-CCCEEEEEEchhhCCCC-CCHHHHHHHHHHHHHH
Confidence            5677788888888999999999997754     234455544432 67999999999996532 2333333    34555


Q ss_pred             cCC---cEEEEeCCCCCCHHHHHHHHHHH
Q 028251          141 NGL---LFLEASARTAQNVEEAFIKTAAK  166 (211)
Q Consensus       141 ~~~---~~~~~s~~~~~~i~~~~~~i~~~  166 (211)
                      .++   .++.+||+++.|++++++.|.+.
T Consensus       123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       123 LGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            666   48999999999999999988654

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.70  E-value=1.9e-07  Score=73.92  Aligned_cols=121  Identities=14%  Similarity=0.201  Sum_probs=78.1

Q ss_pred             CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCe-eeEEEEEEEEE------CCEE---------------------
Q 028251            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI-GVEFGARMVTI------DGRP---------------------   54 (211)
Q Consensus         3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~-~~~~~~~~~~~------~~~~---------------------   54 (211)
                      ++...-|+++|+-..||||||+.|+.+.++.....+- +++.....+.-      ++..                     
T Consensus        55 fd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afln  134 (532)
T KOG1954|consen   55 FDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLN  134 (532)
T ss_pred             cccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHH
Confidence            4566789999999999999999999998865433221 22222221111      1110                     


Q ss_pred             ------------EEEEEEeCCCcc-----------chhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC
Q 028251           55 ------------IKLQIWDTAGQE-----------SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPN  111 (211)
Q Consensus        55 ------------~~l~l~D~~G~~-----------~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~  111 (211)
                                  -.+.++||||.-           .|.....-+...+|.+|++||+...+.-......+.   ....+.
T Consensus       135 Rf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~---aLkG~E  211 (532)
T KOG1954|consen  135 RFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVID---ALKGHE  211 (532)
T ss_pred             HHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHH---HhhCCc
Confidence                        137899999932           233456667889999999999866443333333333   334446


Q ss_pred             CeEEEEEecCCCCCC
Q 028251          112 MSIMLVGNKCDLAHR  126 (211)
Q Consensus       112 ~p~ivv~nK~Dl~~~  126 (211)
                      -.+-||+||+|..+.
T Consensus       212 dkiRVVLNKADqVdt  226 (532)
T KOG1954|consen  212 DKIRVVLNKADQVDT  226 (532)
T ss_pred             ceeEEEeccccccCH
Confidence            678899999998653

>cd01858 NGP_1 NGP-1

Probab=98.69  E-value=1e-07  Score=68.40  Aligned_cols=91  Identities=15%  Similarity=0.086  Sum_probs=56.7

Q ss_pred             HHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCC
Q 028251           74 SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTA  153 (211)
Q Consensus        74 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  153 (211)
                      ..+..+|++++|+|+.++.... ...+...+.. ...+.|+++|+||+|+.+.... ......+........+.+|++.+
T Consensus         4 ~~l~~aD~il~VvD~~~p~~~~-~~~i~~~l~~-~~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~~   80 (157)
T cd01858           4 KVIDSSDVVIQVLDARDPMGTR-CKHVEEYLKK-EKPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINNP   80 (157)
T ss_pred             HhhhhCCEEEEEEECCCCcccc-CHHHHHHHHh-ccCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeecccc
Confidence            3567899999999999863211 1122222222 2335899999999999542211 11122222222223578999999


Q ss_pred             CCHHHHHHHHHHHH
Q 028251          154 QNVEEAFIKTAAKI  167 (211)
Q Consensus       154 ~~i~~~~~~i~~~~  167 (211)
                      .|++++++.+.+..
T Consensus        81 ~~~~~L~~~l~~~~   94 (157)
T cd01858          81 FGKGSLIQLLRQFS   94 (157)
T ss_pred             ccHHHHHHHHHHHH
Confidence            99999988887654

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.68  E-value=5.5e-08  Score=74.15  Aligned_cols=156  Identities=16%  Similarity=0.123  Sum_probs=93.7

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCeeeEEEEEEEEECCEEEEEEEEeCCC----------ccchhhch
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAG----------QESFRSIT   72 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G----------~~~~~~~~   72 (211)
                      +.++.++++|.+++|||+|+|-++..+... ...+..+.+..+...++..   .+.+.|.||          ...+....
T Consensus       134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d~~~~t  210 (320)
T KOG2486|consen  134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPADWDKFT  210 (320)
T ss_pred             CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcchHhHhH
Confidence            456899999999999999999998655433 2222556666665555543   567899999          23455566


Q ss_pred             HHHhccccE---EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCC------CCCC-----HHHHHHHH
Q 028251           73 RSYYRGAAG---ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR------RAVS-----KEEGEQFA  138 (211)
Q Consensus        73 ~~~~~~~d~---~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------~~~~-----~~~~~~~~  138 (211)
                      ..|+.+-+-   +++.+|++-+..  ..+.  ..+.-..+.++|+.+|+||+|..-.      ++..     ....-+.+
T Consensus       211 ~~Y~leR~nLv~~FLLvd~sv~i~--~~D~--~~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~  286 (320)
T KOG2486|consen  211 KSYLLERENLVRVFLLVDASVPIQ--PTDN--PEIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGV  286 (320)
T ss_pred             HHHHHhhhhhheeeeeeeccCCCC--CCCh--HHHHHHhhcCCCeEEeeehhhhhhhccccccCccccceeehhhccccc
Confidence            777766553   444455544311  1111  1112222248999999999997421      1110     01111111


Q ss_pred             HHcCCcEEEEeCCCCCCHHHHHHHHHHH
Q 028251          139 KENGLLFLEASARTAQNVEEAFIKTAAK  166 (211)
Q Consensus       139 ~~~~~~~~~~s~~~~~~i~~~~~~i~~~  166 (211)
                      .....+.+.+|+.++.|++.++-.+.+.
T Consensus       287 f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~  314 (320)
T KOG2486|consen  287 FLVDLPWIYVSSVTSLGRDLLLLHIAQL  314 (320)
T ss_pred             eeccCCceeeecccccCceeeeeehhhh
Confidence            1223456779999999999887666543

>cd01856 YlqF YlqF

Probab=98.66  E-value=8.3e-08  Score=69.86  Aligned_cols=57  Identities=26%  Similarity=0.372  Sum_probs=41.1

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCc
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ   65 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~   65 (211)
                      ..++++++|.+++|||||+|+|.+..+.... ...+.+.....+.++   ..+.+|||||.
T Consensus       114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~T~~~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVG-NKPGVTKGIQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCEEeeeEEEEec---CCEEEEECCCC
Confidence            4578999999999999999999987764322 222445555545554   34689999994

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.66  E-value=2.4e-07  Score=72.60  Aligned_cols=170  Identities=21%  Similarity=0.166  Sum_probs=111.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhC----------CCCC----CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhc
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDK----------RFQP----VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI   71 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~----------~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~   71 (211)
                      .++|.-+|+..-|||||.-++..-          ++.+    ......|+++...++.++-....+.-.|+||+..|-.+
T Consensus        54 HvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYIKN  133 (449)
T KOG0460|consen   54 HVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYIKN  133 (449)
T ss_pred             cccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHHHH
Confidence            468899999999999998877521          1111    12234588888888888877888889999999998888


Q ss_pred             hHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC---CHHHHHHHHHHcCC-----
Q 028251           72 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV---SKEEGEQFAKENGL-----  143 (211)
Q Consensus        72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~~-----  143 (211)
                      ...-..+.|+.|+|+.++|..- .+.+.-+...++..  -..++|++||.|+.++.++   -.-+++++..++++     
T Consensus       134 MItGaaqMDGaILVVaatDG~M-PQTrEHlLLArQVG--V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd~~  210 (449)
T KOG0460|consen  134 MITGAAQMDGAILVVAATDGPM-PQTREHLLLARQVG--VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGDNT  210 (449)
T ss_pred             hhcCccccCceEEEEEcCCCCC-cchHHHHHHHHHcC--CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence            7777889999999999998532 22222222223322  2457888999999754332   12345566666554     


Q ss_pred             cEEEEeCCC---C----CCHHHHHHHHHHHHHHHHhhcccccc
Q 028251          144 LFLEASART---A----QNVEEAFIKTAAKILQNIQEGALDAV  179 (211)
Q Consensus       144 ~~~~~s~~~---~----~~i~~~~~~i~~~~~~~~~~~~~~~~  179 (211)
                      |++.-||+-   +    .|. +....|++.+.+..+.++....
T Consensus       211 PvI~GSAL~ALeg~~peig~-~aI~kLldavDsyip~P~R~~~  252 (449)
T KOG0460|consen  211 PVIRGSALCALEGRQPEIGL-EAIEKLLDAVDSYIPTPERDLD  252 (449)
T ss_pred             CeeecchhhhhcCCCccccH-HHHHHHHHHHhccCCCcccccC
Confidence            588777653   3    233 2345666666665555444433

>TIGR00092 GTP-binding protein YchF

Probab=98.66  E-value=1.4e-07  Score=75.86  Aligned_cols=83  Identities=20%  Similarity=0.099  Sum_probs=60.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCC-CCCCCCCeeeEEEEEEEEECCE---------------EEEEEEEeCCCccc---
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMVTIDGR---------------PIKLQIWDTAGQES---   67 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~l~l~D~~G~~~---   67 (211)
                      +++.|+|.|++|||||+|.|++... .....+..+.......+.+.+.               ...+.+.|.||...   
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            7899999999999999999998876 5444455445555555555442               23678999999533   


Q ss_pred             ----hhhchHHHhccccEEEEEEECC
Q 028251           68 ----FRSITRSYYRGAAGALLVYDIT   89 (211)
Q Consensus        68 ----~~~~~~~~~~~~d~~i~v~d~~   89 (211)
                          ........++.+|++++|+++.
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCC
Confidence                2223445678999999999974

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.62  E-value=1.7e-06  Score=71.96  Aligned_cols=135  Identities=21%  Similarity=0.317  Sum_probs=84.7

Q ss_pred             CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCC------Ce-------------------------------------
Q 028251            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL------TI-------------------------------------   39 (211)
Q Consensus         3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~------~~-------------------------------------   39 (211)
                      .+..++|+|||+..+||||.+..+......+....      ++                                     
T Consensus       305 ~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E  384 (980)
T KOG0447|consen  305 QDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIE  384 (980)
T ss_pred             cccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHH
Confidence            35778999999999999999988864433221110      11                                     


Q ss_pred             ---------eeEEEEEE--EEECCEEE-EEEEEeCCCc-------------cchhhchHHHhccccEEEEEEECCCHHHH
Q 028251           40 ---------GVEFGARM--VTIDGRPI-KLQIWDTAGQ-------------ESFRSITRSYYRGAAGALLVYDITRRETF   94 (211)
Q Consensus        40 ---------~~~~~~~~--~~~~~~~~-~l~l~D~~G~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~~~   94 (211)
                               |.+.+...  .++.|.++ ++.++|.||.             +.......+++.+.+++|+|+--..   .
T Consensus       385 ~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGS---V  461 (980)
T KOG0447|consen  385 LRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGS---V  461 (980)
T ss_pred             HHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCC---c
Confidence                     22222222  33334333 5789999993             2344567889999999999995322   1


Q ss_pred             HHHHHHHHHHH-HhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH
Q 028251           95 NHLSSWLEDAR-QHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE  140 (211)
Q Consensus        95 ~~~~~~~~~~~-~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~  140 (211)
                      +..+.....+. .....+...|+|++|.|+.+....+..-++++...
T Consensus       462 DAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleG  508 (980)
T KOG0447|consen  462 DAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEG  508 (980)
T ss_pred             chhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhc
Confidence            22222222222 22235788999999999987766666767766554

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.61  E-value=1.6e-07  Score=73.65  Aligned_cols=57  Identities=28%  Similarity=0.450  Sum_probs=41.7

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCc
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ   65 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~   65 (211)
                      ..++++++|.+|+|||||+|+|.+......... .|.+.....+.++.   .+.++||||.
T Consensus       117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~-~g~T~~~~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNR-PGVTKGQQWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCccccCCC-CCeecceEEEEeCC---CEEEEECCCc
Confidence            458899999999999999999998765443322 24555555555543   3679999996

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd01855 YqeH YqeH

Probab=98.61  E-value=9.7e-08  Score=70.68  Aligned_cols=56  Identities=21%  Similarity=0.278  Sum_probs=39.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCC-------CCCCCeeeEEEEEEEEECCEEEEEEEEeCCC
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQP-------VHDLTIGVEFGARMVTIDGRPIKLQIWDTAG   64 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G   64 (211)
                      ..+++++|.+|+|||||+|+|.+.....       ......|++.....+.++.   .+.++||||
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG  189 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG  189 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence            3589999999999999999999754311       1122235566666565653   368999999

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.61  E-value=5e-07  Score=83.51  Aligned_cols=112  Identities=20%  Similarity=0.273  Sum_probs=69.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCCCCC------CCCeeeEEEEEEEEECCEEEEEEEEeCCCcc--------chhhchHH
Q 028251            9 YIIIGDTGVGKSCLLLQFTDKRFQPVH------DLTIGVEFGARMVTIDGRPIKLQIWDTAGQE--------SFRSITRS   74 (211)
Q Consensus         9 i~vvG~~~~GKSsli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~--------~~~~~~~~   74 (211)
                      .+|+|++|+||||+++.- +..++-..      ...++.+.... +.+.+.   -.++||+|.-        .....|..
T Consensus       114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~-wwf~~~---avliDtaG~y~~~~~~~~~~~~~W~~  188 (1169)
T TIGR03348       114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCD-WWFTDE---AVLIDTAGRYTTQDSDPEEDAAAWLG  188 (1169)
T ss_pred             EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccc-eEecCC---EEEEcCCCccccCCCcccccHHHHHH
Confidence            579999999999999876 33332211      11112222111 223332   3489999921        12233444


Q ss_pred             Hh---------ccccEEEEEEECCCH-----HH----HHHHHHHHHHHHHhcCCCCeEEEEEecCCCCC
Q 028251           75 YY---------RGAAGALLVYDITRR-----ET----FNHLSSWLEDARQHANPNMSIMLVGNKCDLAH  125 (211)
Q Consensus        75 ~~---------~~~d~~i~v~d~~~~-----~~----~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  125 (211)
                      ++         +..|++|+++|+.+-     +.    ...++..++++....+...|++|+++|+|+..
T Consensus       189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~  257 (1169)
T TIGR03348       189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA  257 (1169)
T ss_pred             HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence            43         568999999998652     11    13455666777777778999999999999854

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=98.60  E-value=2.7e-08  Score=73.95  Aligned_cols=125  Identities=17%  Similarity=0.197  Sum_probs=81.1

Q ss_pred             EEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHH-------HHH---HHHHHHHHhc-CCCCeEEE
Q 028251           48 VTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFN-------HLS---SWLEDARQHA-NPNMSIML  116 (211)
Q Consensus        48 ~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~-------~~~---~~~~~~~~~~-~~~~p~iv  116 (211)
                      +.++-.++.+.+.|.+|+..-+.-|...+.++-.++|++.++..+...       .+.   .++..+..+. -++.++|+
T Consensus       192 ypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIl  271 (359)
T KOG0085|consen  192 YPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVIL  271 (359)
T ss_pred             cCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEE
Confidence            344555667889999999988889999999998888888776543221       111   1112221111 15889999


Q ss_pred             EEecCCCCCCCCC----------------CHHHHHHHHHHc----C------CcEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 028251          117 VGNKCDLAHRRAV----------------SKEEGEQFAKEN----G------LLFLEASARTAQNVEEAFIKTAAKILQN  170 (211)
Q Consensus       117 v~nK~Dl~~~~~~----------------~~~~~~~~~~~~----~------~~~~~~s~~~~~~i~~~~~~i~~~~~~~  170 (211)
                      ++||.|+.++..+                ..+.++.+....    +      +.-.++.|.+.+||.-+|..+...+++.
T Consensus       272 FLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~  351 (359)
T KOG0085|consen  272 FLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL  351 (359)
T ss_pred             EechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHh
Confidence            9999998654222                223334444331    1      1134678889999999999998888776


Q ss_pred             Hh
Q 028251          171 IQ  172 (211)
Q Consensus       171 ~~  172 (211)
                      +-
T Consensus       352 ~L  353 (359)
T KOG0085|consen  352 NL  353 (359)
T ss_pred             hh
Confidence            54

>cd01859 MJ1464 MJ1464

Probab=98.60  E-value=1.8e-07  Score=66.97  Aligned_cols=56  Identities=25%  Similarity=0.341  Sum_probs=39.3

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCC
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG   64 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G   64 (211)
                      ...+++++|.+++|||||+|+|.+..... ..++.+.+.....+..++   .+.+|||||
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~-~~~~~~~t~~~~~~~~~~---~~~~~DtpG  155 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHSAS-TSPSPGYTKGEQLVKITS---KIYLLDTPG  155 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCccc-cCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence            45789999999999999999999765332 233445544443333333   478999999

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.60  E-value=2.3e-07  Score=73.13  Aligned_cols=58  Identities=26%  Similarity=0.391  Sum_probs=42.4

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcc
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE   66 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~   66 (211)
                      ..++++++|.+|+|||||+|+|.+........ ..|.|.....+.++.   .+.++||||..
T Consensus       120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~-~~g~T~~~~~~~~~~---~~~l~DtPGi~  177 (287)
T PRK09563        120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGN-RPGVTKAQQWIKLGK---GLELLDTPGIL  177 (287)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCccccCC-CCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence            45899999999999999999999876543332 225555555555543   36799999954

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.59  E-value=1.6e-08  Score=78.00  Aligned_cols=166  Identities=18%  Similarity=0.194  Sum_probs=101.7

Q ss_pred             CCCCceeeEEEEcCCCCCHHHHHHHHHhCC---CCCCCCCCeeeEE--E-EEEEEE------------------------
Q 028251            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKR---FQPVHDLTIGVEF--G-ARMVTI------------------------   50 (211)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~--~-~~~~~~------------------------   50 (211)
                      |+..-+++|.-+|+..-||||+++++.+-.   |-.+.....+...  . .+.+..                        
T Consensus        33 isRQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c  112 (466)
T KOG0466|consen   33 ISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPC  112 (466)
T ss_pred             hhheeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCc
Confidence            456678999999999999999999885421   1000000000000  0 000000                        


Q ss_pred             -----CC---EEEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCC
Q 028251           51 -----DG---RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD  122 (211)
Q Consensus        51 -----~~---~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  122 (211)
                           .+   --..+.|+|+||++...+....-..-.|++++++..+..-...+...-+..+....  =+.++++-||.|
T Consensus       113 ~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~--LkhiiilQNKiD  190 (466)
T KOG0466|consen  113 DRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMK--LKHIIILQNKID  190 (466)
T ss_pred             ccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhh--hceEEEEechhh
Confidence                 01   01357899999999888765555556788888888776322222222222222222  356899999999


Q ss_pred             CCCCCCC--CHHHHHHHHHH---cCCcEEEEeCCCCCCHHHHHHHHHHHHH
Q 028251          123 LAHRRAV--SKEEGEQFAKE---NGLLFLEASARTAQNVEEAFIKTAAKIL  168 (211)
Q Consensus       123 l~~~~~~--~~~~~~~~~~~---~~~~~~~~s~~~~~~i~~~~~~i~~~~~  168 (211)
                      +..+.+.  ..+.+..|...   .+.|++++||.-..|++.+.++|...+.
T Consensus       191 li~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIP  241 (466)
T KOG0466|consen  191 LIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP  241 (466)
T ss_pred             hhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence            9654332  22344555554   4678999999999999999888887763

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.59  E-value=7e-08  Score=77.48  Aligned_cols=116  Identities=19%  Similarity=0.193  Sum_probs=90.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCC----------------CCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchh
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPV----------------HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR   69 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~   69 (211)
                      .-+|.++.+-.+||||...|++.-.....                ...-.|++++..-++++.+..+++++||||+-.|.
T Consensus        37 irnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~  116 (753)
T KOG0464|consen   37 IRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFR  116 (753)
T ss_pred             hhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEE
Confidence            34789999999999999999863221110                01123788888888999999999999999999999


Q ss_pred             hchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCC
Q 028251           70 SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH  125 (211)
Q Consensus        70 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  125 (211)
                      -.....++-.|+++.|||.+.....+.+.-|++    ..+.+.|-+.++||+|...
T Consensus       117 leverclrvldgavav~dasagve~qtltvwrq----adk~~ip~~~finkmdk~~  168 (753)
T KOG0464|consen  117 LEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ----ADKFKIPAHCFINKMDKLA  168 (753)
T ss_pred             EEHHHHHHHhcCeEEEEeccCCcccceeeeehh----ccccCCchhhhhhhhhhhh
Confidence            889999999999999999987655555556643    3445899999999999754

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.55  E-value=4e-07  Score=71.36  Aligned_cols=85  Identities=20%  Similarity=0.164  Sum_probs=62.5

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECC---------------EEEEEEEEeCCCccc--
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDG---------------RPIKLQIWDTAGQES--   67 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~l~D~~G~~~--   67 (211)
                      ..+++.+||.|++|||||+|.|......+.-.|..+++.....+.+..               ....+.++|++|.-.  
T Consensus        19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA   98 (391)
T KOG1491|consen   19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA   98 (391)
T ss_pred             CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence            467999999999999999999999988877777767666665555532               234689999999322  


Q ss_pred             -----hhhchHHHhccccEEEEEEECC
Q 028251           68 -----FRSITRSYYRGAAGALLVYDIT   89 (211)
Q Consensus        68 -----~~~~~~~~~~~~d~~i~v~d~~   89 (211)
                           .......-++.+|+++.|+++.
T Consensus        99 s~G~GLGN~FLs~iR~vDaifhVVr~f  125 (391)
T KOG1491|consen   99 SAGEGLGNKFLSHIRHVDAIFHVVRAF  125 (391)
T ss_pred             ccCcCchHHHHHhhhhccceeEEEEec
Confidence                 2222334467899999999753

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.54  E-value=2e-07  Score=74.45  Aligned_cols=57  Identities=23%  Similarity=0.379  Sum_probs=46.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcc
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE   66 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~   66 (211)
                      .++++|+|-|++|||||||+|.+.........+ |.|.....+.++..   +.++||||.-
T Consensus       132 ~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~P-G~Tk~~q~i~~~~~---i~LlDtPGii  188 (322)
T COG1161         132 KIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRP-GTTKGIQWIKLDDG---IYLLDTPGII  188 (322)
T ss_pred             ceEEEEEcCCCCcHHHHHHHHhcccceeeCCCC-ceecceEEEEcCCC---eEEecCCCcC
Confidence            478999999999999999999998875444444 88888888877765   6799999954

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.53  E-value=2.3e-06  Score=65.01  Aligned_cols=86  Identities=16%  Similarity=0.081  Sum_probs=53.1

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhC--CCCCCCC---CCeeeEEEEEEEEECCEEEEEEEEeCCCccchh------hchH
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDK--RFQPVHD---LTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR------SITR   73 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~------~~~~   73 (211)
                      ...-|.|+|++++|||+|+|.|++.  .+.....   -|.|+......+. .+....+.++||+|.....      ....
T Consensus         6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~-~~~~~~v~~lDteG~~~~~~~~~~~~~~~   84 (224)
T cd01851           6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFK-LGKEHAVLLLDTEGTDGRERGEFEDDARL   84 (224)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEecccc-CCCcceEEEEecCCcCccccCchhhhhHH
Confidence            4567899999999999999999988  5543322   1222222221111 1234678999999954322      2223


Q ss_pred             HHhcc--ccEEEEEEECCCH
Q 028251           74 SYYRG--AAGALLVYDITRR   91 (211)
Q Consensus        74 ~~~~~--~d~~i~v~d~~~~   91 (211)
                      ..+..  +|.+|+..+....
T Consensus        85 ~~l~~llss~~i~n~~~~~~  104 (224)
T cd01851          85 FALATLLSSVLIYNSWETIL  104 (224)
T ss_pred             HHHHHHHhCEEEEeccCccc
Confidence            33334  7888888877653

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.52  E-value=4.8e-07  Score=77.42  Aligned_cols=118  Identities=17%  Similarity=0.191  Sum_probs=86.8

Q ss_pred             CCCCceeeEEEEcCCCCCHHHHHHHHHhCCCC--------------CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcc
Q 028251            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQ--------------PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE   66 (211)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~   66 (211)
                      |+.+..-+|+++-+..-|||||...|+.....              -+...+.|++.....+.+-...+.++++|+||+-
T Consensus         4 ~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghv   83 (887)
T KOG0467|consen    4 KGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHV   83 (887)
T ss_pred             CCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCcc
Confidence            45667789999999999999999999754321              1122344666666666666677889999999999


Q ss_pred             chhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCC
Q 028251           67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD  122 (211)
Q Consensus        67 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  122 (211)
                      .|.+.......-+|++++++|+...-.-+...-.++-...    +...++|+||+|
T Consensus        84 df~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~----~~~~~lvinkid  135 (887)
T KOG0467|consen   84 DFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE----GLKPILVINKID  135 (887)
T ss_pred             chhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc----cCceEEEEehhh
Confidence            9999999999999999999999875432322222222221    566899999999

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.52  E-value=7.9e-07  Score=69.70  Aligned_cols=100  Identities=17%  Similarity=0.208  Sum_probs=65.7

Q ss_pred             CCcc-chhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHc
Q 028251           63 AGQE-SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN  141 (211)
Q Consensus        63 ~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~  141 (211)
                      ||+. .........+..+|++++|+|+.++.+...  .++..+.    .+.|+++|+||+|+.+...  .....+.....
T Consensus         5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l----~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~   76 (276)
T TIGR03596         5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR----GNKPRLIVLNKADLADPAV--TKQWLKYFEEK   76 (276)
T ss_pred             hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH----CCCCEEEEEEccccCCHHH--HHHHHHHHHHc
Confidence            5543 223456677889999999999987644222  1111111    2689999999999854211  12222223334


Q ss_pred             CCcEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 028251          142 GLLFLEASARTAQNVEEAFIKTAAKILQN  170 (211)
Q Consensus       142 ~~~~~~~s~~~~~~i~~~~~~i~~~~~~~  170 (211)
                      +.+++.+|++++.|++++.+.+.+.+...
T Consensus        77 ~~~vi~iSa~~~~gi~~L~~~i~~~~~~~  105 (276)
T TIGR03596        77 GIKALAINAKKGKGVKKIIKAAKKLLKEK  105 (276)
T ss_pred             CCeEEEEECCCcccHHHHHHHHHHHHHHh
Confidence            56789999999999999988888776543

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.50  E-value=1.6e-06  Score=65.77  Aligned_cols=85  Identities=19%  Similarity=0.151  Sum_probs=57.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc-------hhhchHHHhccc
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES-------FRSITRSYYRGA   79 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~-------~~~~~~~~~~~~   79 (211)
                      .++.++|.|.+||||++..|.+...........+.+.-...+.+++.  ++++.|.||.-+       ......+..+.+
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~ga--Kiqlldlpgiiegakdgkgrg~qviavartc  137 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGA--KIQLLDLPGIIEGAKDGKGRGKQVIAVARTC  137 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEecccc--ceeeecCcchhcccccCCCCccEEEEEeecc
Confidence            48899999999999999999987655444444344443444445554  467899999432       122344556778


Q ss_pred             cEEEEEEECCCHHH
Q 028251           80 AGALLVYDITRRET   93 (211)
Q Consensus        80 d~~i~v~d~~~~~~   93 (211)
                      +.+++|.|+..|-+
T Consensus       138 nli~~vld~~kp~~  151 (358)
T KOG1487|consen  138 NLIFIVLDVLKPLS  151 (358)
T ss_pred             cEEEEEeeccCccc
Confidence            88999999765433

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=98.49  E-value=4.7e-07  Score=68.60  Aligned_cols=121  Identities=15%  Similarity=0.189  Sum_probs=76.1

Q ss_pred             ECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHH-------HHHHHH---HHHHHHHhc-CCCCeEEEEE
Q 028251           50 IDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET-------FNHLSS---WLEDARQHA-NPNMSIMLVG  118 (211)
Q Consensus        50 ~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~-------~~~~~~---~~~~~~~~~-~~~~p~ivv~  118 (211)
                      +.-..+.++.+|.+|+...+.-|...+..+.++|||+..+....       ...++.   ++..++... .....+|+++
T Consensus       197 FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFL  276 (379)
T KOG0099|consen  197 FQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFL  276 (379)
T ss_pred             EeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEe
Confidence            33344568899999999999999999999999999998865321       122322   222222211 1357799999


Q ss_pred             ecCCCCCCC----------------------------CCCHHH--HHHHHHH-------------cCCcEEEEeCCCCCC
Q 028251          119 NKCDLAHRR----------------------------AVSKEE--GEQFAKE-------------NGLLFLEASARTAQN  155 (211)
Q Consensus       119 nK~Dl~~~~----------------------------~~~~~~--~~~~~~~-------------~~~~~~~~s~~~~~~  155 (211)
                      ||.|+.+++                            .....-  ++.+.+.             +-+.+.++.|.+.++
T Consensus       277 NKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTen  356 (379)
T KOG0099|consen  277 NKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTEN  356 (379)
T ss_pred             cHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHH
Confidence            999973220                            011111  1111111             122356788999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 028251          156 VEEAFIKTAAKILQN  170 (211)
Q Consensus       156 i~~~~~~i~~~~~~~  170 (211)
                      |..+|+.....+.+.
T Consensus       357 IrrVFnDcrdiIqr~  371 (379)
T KOG0099|consen  357 IRRVFNDCRDIIQRM  371 (379)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999876666544

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.45  E-value=6.8e-07  Score=62.94  Aligned_cols=78  Identities=17%  Similarity=0.241  Sum_probs=52.3

Q ss_pred             hHHHhccccEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEe
Q 028251           72 TRSYYRGAAGALLVYDITRRETFN--HLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEAS  149 (211)
Q Consensus        72 ~~~~~~~~d~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s  149 (211)
                      ....+..+|++++|+|+.++.+..  .+..++..   . ..++|+++++||+|+.+...  .....+.....+..++++|
T Consensus         5 ~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~---~-~~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iS   78 (141)
T cd01857           5 LWRVVERSDIVVQIVDARNPLLFRPPDLERYVKE---V-DPRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFS   78 (141)
T ss_pred             HHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHh---c-cCCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEE
Confidence            345678899999999998876533  33333322   2 14789999999999854221  2233455555677899999


Q ss_pred             CCCCCC
Q 028251          150 ARTAQN  155 (211)
Q Consensus       150 ~~~~~~  155 (211)
                      +.++.+
T Consensus        79 a~~~~~   84 (141)
T cd01857          79 ALKENA   84 (141)
T ss_pred             ecCCCc
Confidence            997653

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.45  E-value=1.9e-06  Score=68.75  Aligned_cols=152  Identities=16%  Similarity=0.116  Sum_probs=92.2

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCC--------------CeeeEEEEEEEEECCE----------------
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL--------------TIGVEFGARMVTIDGR----------------   53 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~----------------   53 (211)
                      +..+.+.+.|+...|||||+-.|..+..+...-.              -.+.+.+...+.+++.                
T Consensus       115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~  194 (527)
T COG5258         115 PEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAA  194 (527)
T ss_pred             CceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhH
Confidence            4568899999999999999888764443221111              1122333333333321                


Q ss_pred             -----EEEEEEEeCCCccchhhc--hHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCC
Q 028251           54 -----PIKLQIWDTAGQESFRSI--TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR  126 (211)
Q Consensus        54 -----~~~l~l~D~~G~~~~~~~--~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  126 (211)
                           +..+.|+|+.|++.|-..  .-.+-.+.|..++++.+++..+-  +......+...  -+.|++++++|+|+.++
T Consensus       195 vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~--~tkEHLgi~~a--~~lPviVvvTK~D~~~d  270 (527)
T COG5258         195 VVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTK--MTKEHLGIALA--MELPVIVVVTKIDMVPD  270 (527)
T ss_pred             hhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcch--hhhHhhhhhhh--hcCCEEEEEEecccCcH
Confidence                 134789999999988763  33445789999999999886431  11111122111  28999999999999654


Q ss_pred             CCCC--HHHHHHH----------------------HHH--c-CCcEEEEeCCCCCCHHHH
Q 028251          127 RAVS--KEEGEQF----------------------AKE--N-GLLFLEASARTAQNVEEA  159 (211)
Q Consensus       127 ~~~~--~~~~~~~----------------------~~~--~-~~~~~~~s~~~~~~i~~~  159 (211)
                      ....  .+++...                      +-+  . =+|++.+|+.+|+|++-+
T Consensus       271 dr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL  330 (527)
T COG5258         271 DRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLL  330 (527)
T ss_pred             HHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHH
Confidence            2111  1122111                      111  1 247899999999997654

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.44  E-value=1.1e-05  Score=65.54  Aligned_cols=161  Identities=17%  Similarity=0.220  Sum_probs=90.8

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCC-----------------CCC----Ceee---EEEEEEEEE-CCEEEEEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-----------------HDL----TIGV---EFGARMVTI-DGRPIKLQI   59 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~-----------------~~~----~~~~---~~~~~~~~~-~~~~~~l~l   59 (211)
                      ..+-|.||||.-+|||||++||...-..+.                 ...    |+.+   ......+.+ ++..+++.+
T Consensus        16 GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRL   95 (492)
T PF09547_consen   16 GDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRL   95 (492)
T ss_pred             CceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEE
Confidence            346799999999999999999953321111                 000    1111   111223444 577889999


Q ss_pred             EeCCCcc-------------------chhh----------chHHHhcc-cc-EEEEEEECC--C--HHHH-HHHHHHHHH
Q 028251           60 WDTAGQE-------------------SFRS----------ITRSYYRG-AA-GALLVYDIT--R--RETF-NHLSSWLED  103 (211)
Q Consensus        60 ~D~~G~~-------------------~~~~----------~~~~~~~~-~d-~~i~v~d~~--~--~~~~-~~~~~~~~~  103 (211)
                      +|+.|..                   .|..          -++..++. +. ++++.-|-+  +  ++.+ ..-...+.+
T Consensus        96 iDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~E  175 (492)
T PF09547_consen   96 IDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEE  175 (492)
T ss_pred             EeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHH
Confidence            9999811                   0000          01111111 22 455544432  2  2333 223344555


Q ss_pred             HHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Q 028251          104 ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ  172 (211)
Q Consensus       104 ~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~~  172 (211)
                      +...   ++|++|++|-.+-..  ....++...+..+++++++.+++..= .-+++ ..|++.++..++
T Consensus       176 Lk~i---gKPFvillNs~~P~s--~et~~L~~eL~ekY~vpVlpvnc~~l-~~~DI-~~Il~~vLyEFP  237 (492)
T PF09547_consen  176 LKEI---GKPFVILLNSTKPYS--EETQELAEELEEKYDVPVLPVNCEQL-REEDI-TRILEEVLYEFP  237 (492)
T ss_pred             HHHh---CCCEEEEEeCCCCCC--HHHHHHHHHHHHHhCCcEEEeehHHc-CHHHH-HHHHHHHHhcCC
Confidence            5554   899999999887532  34456777788889999998887652 33343 345555555444

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.43  E-value=7.3e-07  Score=63.79  Aligned_cols=56  Identities=27%  Similarity=0.358  Sum_probs=37.2

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCC
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG   64 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G   64 (211)
                      ...+++++|.+|+|||||+|.|.+.......... +.+.....+.++   ..+.++||||
T Consensus        99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~-~~t~~~~~~~~~---~~~~liDtPG  154 (155)
T cd01849          99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVP-GTTTSQQEVKLD---NKIKLLDTPG  154 (155)
T ss_pred             cCcEEEEEccCCCCHHHHHHHHHccccccccCCC-CcccceEEEEec---CCEEEEECCC
Confidence            4578999999999999999999986543222111 222223333333   2477999999

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.43  E-value=1.8e-06  Score=62.05  Aligned_cols=64  Identities=13%  Similarity=0.110  Sum_probs=37.2

Q ss_pred             EEEEEEEeCCCccchhhchHH--------HhccccEEEEEEECCCHHH-HHHHHHHHHHHHHhcCCCCeEEEEEecCCC
Q 028251           54 PIKLQIWDTAGQESFRSITRS--------YYRGAAGALLVYDITRRET-FNHLSSWLEDARQHANPNMSIMLVGNKCDL  123 (211)
Q Consensus        54 ~~~l~l~D~~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  123 (211)
                      ..+..+.|++|..........        ..-..|.+++++|+..... +.+...+...+...      -+|++||+|+
T Consensus        86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a------d~ivlnk~dl  158 (158)
T cd03112          86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA------DRILLNKTDL  158 (158)
T ss_pred             CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC------CEEEEecccC
Confidence            346678999996544443322        2235778999999765322 11222233333322      2779999996

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.40  E-value=3.3e-07  Score=65.43  Aligned_cols=58  Identities=22%  Similarity=0.263  Sum_probs=33.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCC------CCeeeEEEEEEEEECCEEEEEEEEeCCCccc
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHD------LTIGVEFGARMVTIDGRPIKLQIWDTAGQES   67 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~   67 (211)
                      -.++++|++|||||||+|.|.+........      .-.-++.....+.++...   .+.||||...
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~---~iIDTPGf~~   99 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGG---YIIDTPGFRS   99 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSE---EEECSHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCc---EEEECCCCCc
Confidence            468999999999999999999763222110      100112223334554433   4889999643

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.35  E-value=9.6e-07  Score=71.17  Aligned_cols=58  Identities=28%  Similarity=0.399  Sum_probs=36.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCCCCCCCCe----e--eEEEEEEEEECCEEEEEEEEeCCCccchh
Q 028251            9 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI----G--VEFGARMVTIDGRPIKLQIWDTAGQESFR   69 (211)
Q Consensus         9 i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~l~l~D~~G~~~~~   69 (211)
                      ++++|++|||||||+|+|++.........+.    |  ++.....+.+++..   .++||||...+.
T Consensus       208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~  271 (347)
T PRK12288        208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG  271 (347)
T ss_pred             EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence            7899999999999999999765432211110    0  22233334554332   389999976544

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.34  E-value=3.8e-06  Score=66.21  Aligned_cols=101  Identities=17%  Similarity=0.186  Sum_probs=66.7

Q ss_pred             CCCccc-hhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH
Q 028251           62 TAGQES-FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE  140 (211)
Q Consensus        62 ~~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~  140 (211)
                      +||+.. ........+..+|++++|+|+.++.+...  .++....    .+.|+++|+||+|+.+...  .+....+...
T Consensus         7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~----~~kp~iiVlNK~DL~~~~~--~~~~~~~~~~   78 (287)
T PRK09563          7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII----GNKPRLLILNKSDLADPEV--TKKWIEYFEE   78 (287)
T ss_pred             cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh----CCCCEEEEEEchhcCCHHH--HHHHHHHHHH
Confidence            466542 23346677889999999999987644222  1122211    1689999999999853211  1222233334


Q ss_pred             cCCcEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 028251          141 NGLLFLEASARTAQNVEEAFIKTAAKILQN  170 (211)
Q Consensus       141 ~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~  170 (211)
                      .+.+++.+|++++.|++++.+.+.+.+...
T Consensus        79 ~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~  108 (287)
T PRK09563         79 QGIKALAINAKKGQGVKKILKAAKKLLKEK  108 (287)
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence            467789999999999999998887776544

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.33  E-value=8.4e-06  Score=65.03  Aligned_cols=144  Identities=22%  Similarity=0.188  Sum_probs=79.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCC-------CCC--------------CeeeEEEEEEEEE-------------C
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPV-------HDL--------------TIGVEFGARMVTI-------------D   51 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~-------~~~--------------~~~~~~~~~~~~~-------------~   51 (211)
                      .-.|+++|++|+||||++..|...-....       .+.              ..+..+.......             .
T Consensus       114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~  193 (318)
T PRK10416        114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAK  193 (318)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence            45789999999999999998853211000       000              0011111110000             1


Q ss_pred             CEEEEEEEEeCCCccchhhc----hHHH--------hccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEe
Q 028251           52 GRPIKLQIWDTAGQESFRSI----TRSY--------YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGN  119 (211)
Q Consensus        52 ~~~~~l~l~D~~G~~~~~~~----~~~~--------~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n  119 (211)
                      ...+.+.|+||||.......    ...+        ....+..++|+|++...  ..+... ..+...   -.+.-+++|
T Consensus       194 ~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~a-~~f~~~---~~~~giIlT  267 (318)
T PRK10416        194 ARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQA-KAFHEA---VGLTGIILT  267 (318)
T ss_pred             hCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHHH-HHHHhh---CCCCEEEEE
Confidence            13457889999996532221    1111        23467889999998642  222221 222211   234578899


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028251          120 KCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (211)
Q Consensus       120 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  161 (211)
                      |.|....    .-.+...+...+.|+..++  +|++++++-.
T Consensus       268 KlD~t~~----~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~~  303 (318)
T PRK10416        268 KLDGTAK----GGVVFAIADELGIPIKFIG--VGEGIDDLQP  303 (318)
T ss_pred             CCCCCCC----ccHHHHHHHHHCCCEEEEe--CCCChhhCcc
Confidence            9995432    1234445566799988887  7777776643

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.29  E-value=1.9e-05  Score=66.19  Aligned_cols=135  Identities=17%  Similarity=0.180  Sum_probs=78.8

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      .++-++|+||+|+||||||+.|...-.........|    .. .-+.+...++.+.++|.+  ..+ .....+-+|.+++
T Consensus        68 PPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~G----Pi-TvvsgK~RRiTflEcp~D--l~~-miDvaKIaDLVlL  139 (1077)
T COG5192          68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRG----PI-TVVSGKTRRITFLECPSD--LHQ-MIDVAKIADLVLL  139 (1077)
T ss_pred             CCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCC----ce-EEeecceeEEEEEeChHH--HHH-HHhHHHhhheeEE
Confidence            567788999999999999998874321111111101    01 124667788999999942  222 4456677999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEecCCCCCCCCCCHHHHHHHHH-------HcCCcEEEEeCCC
Q 028251           85 VYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAVSKEEGEQFAK-------ENGLLFLEASART  152 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~-------~~~~~~~~~s~~~  152 (211)
                      ++|.+=.-..+.+ .+++.+..+   +.| ++-|+++.|+.... -....+....+       ..|+.+|.+|-..
T Consensus       140 lIdgnfGfEMETm-EFLnil~~H---GmPrvlgV~ThlDlfk~~-stLr~~KKrlkhRfWtEiyqGaKlFylsgV~  210 (1077)
T COG5192         140 LIDGNFGFEMETM-EFLNILISH---GMPRVLGVVTHLDLFKNP-STLRSIKKRLKHRFWTEIYQGAKLFYLSGVE  210 (1077)
T ss_pred             EeccccCceehHH-HHHHHHhhc---CCCceEEEEeecccccCh-HHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence            9998654222222 233333333   566 56678999985432 12222222111       1467777777543

>PRK12289 GTPase RsgA; Reviewed

Probab=98.29  E-value=1.4e-06  Score=70.35  Aligned_cols=55  Identities=22%  Similarity=0.304  Sum_probs=35.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCee-------eEEEEEEEEECCEEEEEEEEeCCCcc
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIG-------VEFGARMVTIDGRPIKLQIWDTAGQE   66 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~l~D~~G~~   66 (211)
                      .++|+|++|||||||+|+|++.........+ +       +|.....+.+++..   .|+||||..
T Consensus       174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs-~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~  235 (352)
T PRK12289        174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVS-GKLGRGRHTTRHVELFELPNGG---LLADTPGFN  235 (352)
T ss_pred             eEEEEeCCCCCHHHHHHHHcCcccccccccc-CCCCCCCCcCceeEEEECCCCc---EEEeCCCcc
Confidence            3799999999999999999976433221111 1       22233334454322   589999974

>PRK01889 GTPase RsgA; Reviewed

Probab=98.27  E-value=3.8e-06  Score=68.17  Aligned_cols=84  Identities=14%  Similarity=0.163  Sum_probs=57.5

Q ss_pred             HhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-HcCCcEEEEeCCCC
Q 028251           75 YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-ENGLLFLEASARTA  153 (211)
Q Consensus        75 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~  153 (211)
                      +..++|.+++|+++..+.....+..++......   +.|.+||+||+||.+...   +....+.. ..+++++.+|++++
T Consensus       109 iaANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---~i~piIVLNK~DL~~~~~---~~~~~~~~~~~g~~Vi~vSa~~g  182 (356)
T PRK01889        109 IAANVDTVFIVCSLNHDFNLRRIERYLALAWES---GAEPVIVLTKADLCEDAE---EKIAEVEALAPGVPVLAVSALDG  182 (356)
T ss_pred             EEEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---CCCEEEEEEChhcCCCHH---HHHHHHHHhCCCCcEEEEECCCC
Confidence            367899999999996444444455554444443   678899999999965311   11222222 35678999999999


Q ss_pred             CCHHHHHHHHH
Q 028251          154 QNVEEAFIKTA  164 (211)
Q Consensus       154 ~~i~~~~~~i~  164 (211)
                      .|++++...|.
T Consensus       183 ~gl~~L~~~L~  193 (356)
T PRK01889        183 EGLDVLAAWLS  193 (356)
T ss_pred             ccHHHHHHHhh
Confidence            99999877763

>PRK13796 GTPase YqeH; Provisional

Probab=98.27  E-value=8e-06  Score=66.52  Aligned_cols=92  Identities=27%  Similarity=0.335  Sum_probs=61.1

Q ss_pred             chhhchHHHhcccc-EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHH----HHHHHc
Q 028251           67 SFRSITRSYYRGAA-GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGE----QFAKEN  141 (211)
Q Consensus        67 ~~~~~~~~~~~~~d-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~----~~~~~~  141 (211)
                      .+..... .+...| .+++|+|+.|..     ..|...+.+... +.|+++|+||+|+... ....+...    .+++..
T Consensus        58 ~~~~~l~-~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~-~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~  129 (365)
T PRK13796         58 DFLKLLN-GIGDSDALVVNVVDIFDFN-----GSWIPGLHRFVG-NNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKEL  129 (365)
T ss_pred             HHHHHHH-hhcccCcEEEEEEECccCC-----CchhHHHHHHhC-CCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhc
Confidence            3444333 334455 899999998743     234445544433 6799999999999642 22233333    334455


Q ss_pred             CC---cEEEEeCCCCCCHHHHHHHHHHH
Q 028251          142 GL---LFLEASARTAQNVEEAFIKTAAK  166 (211)
Q Consensus       142 ~~---~~~~~s~~~~~~i~~~~~~i~~~  166 (211)
                      ++   .++.+||+++.|++++++.|.+.
T Consensus       130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        130 GLRPVDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             CCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence            65   58999999999999999988654

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.26  E-value=0.00021  Score=50.68  Aligned_cols=147  Identities=20%  Similarity=0.232  Sum_probs=76.7

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCC-Ccc----------------
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTA-GQE----------------   66 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~-G~~----------------   66 (211)
                      ...++|.|.|+||+||||++.++.+.-....+.-. |  +....+.-++...-+.+.|.. |..                
T Consensus         3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvg-G--f~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY   79 (179)
T COG1618           3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVG-G--FITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKY   79 (179)
T ss_pred             CcceEEEEeCCCCccHHHHHHHHHHHHHhcCceee-e--EEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceE
Confidence            35689999999999999999988743222211111 1  112223345555666666665 311                


Q ss_pred             ---------chhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHH
Q 028251           67 ---------SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF  137 (211)
Q Consensus        67 ---------~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~  137 (211)
                               ........++..+|++|  +|=--+-.+ ....+...+........|++.++++.+- +   ...+   ++
T Consensus        80 ~V~v~~le~i~~~al~rA~~~aDvII--IDEIGpMEl-ks~~f~~~ve~vl~~~kpliatlHrrsr-~---P~v~---~i  149 (179)
T COG1618          80 GVNVEGLEEIAIPALRRALEEADVII--IDEIGPMEL-KSKKFREAVEEVLKSGKPLIATLHRRSR-H---PLVQ---RI  149 (179)
T ss_pred             EeeHHHHHHHhHHHHHHHhhcCCEEE--Eecccchhh-ccHHHHHHHHHHhcCCCcEEEEEecccC-C---hHHH---Hh
Confidence                     11112344455667554  453333211 1234555555555568898888887653 1   1112   22


Q ss_pred             HHHcCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 028251          138 AKENGLLFLEASARTAQNVEEAFIKTAAKI  167 (211)
Q Consensus       138 ~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~  167 (211)
                       ...+..++++   +..|=+.+++.|+..+
T Consensus       150 -k~~~~v~v~l---t~~NR~~i~~~Il~~L  175 (179)
T COG1618         150 -KKLGGVYVFL---TPENRNRILNEILSVL  175 (179)
T ss_pred             -hhcCCEEEEE---ccchhhHHHHHHHHHh
Confidence             2223333333   4444447777766654

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.25  E-value=4.6e-06  Score=75.87  Aligned_cols=156  Identities=24%  Similarity=0.305  Sum_probs=84.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCCCC------CCCCeeeEEEEEEEEECCEEEEEEEEeCCCc--------cchhhchHH
Q 028251            9 YIIIGDTGVGKSCLLLQFTDKRFQPV------HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ--------ESFRSITRS   74 (211)
Q Consensus         9 i~vvG~~~~GKSsli~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~--------~~~~~~~~~   74 (211)
                      -+|+|++|+||||++..- +..|.-.      .....+ +.... ..+.+   .-.++||+|.        +.....|..
T Consensus       128 y~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~g-T~~cd-wwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~  201 (1188)
T COG3523         128 YMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPG-TRNCD-WWFTD---EAVLIDTAGRYITQDSADEVDRAEWLG  201 (1188)
T ss_pred             eEEecCCCCCcchHHhcc-cccCcchhhhccccccCCC-CcccC-ccccc---ceEEEcCCcceecccCcchhhHHHHHH
Confidence            478999999999987532 2222111      001111 11111 22222   2358899992        123334554


Q ss_pred             H---------hccccEEEEEEECCCH-----H-H---HHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCC-----CCCH
Q 028251           75 Y---------YRGAAGALLVYDITRR-----E-T---FNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR-----AVSK  131 (211)
Q Consensus        75 ~---------~~~~d~~i~v~d~~~~-----~-~---~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----~~~~  131 (211)
                      +         .+..|++|+.+|+.+-     . .   ...++.-++++........|++|++||.|+...-     ..+.
T Consensus       202 fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~GF~efF~~l~~  281 (1188)
T COG3523         202 FLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPGFEEFFGSLNK  281 (1188)
T ss_pred             HHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccccHHHHHhccCH
Confidence            4         3678999999998652     1 1   2234455666666666899999999999985421     1111


Q ss_pred             HHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHHhhc
Q 028251          132 EEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG  174 (211)
Q Consensus       132 ~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~~~~  174 (211)
                      ++.++.   .|+ -+..++....+....+++-.+.+.++.+..
T Consensus       282 ~~r~qv---wG~-tf~~~~~~~~~~~~~~~~e~~~L~~rl~~~  320 (1188)
T COG3523         282 EEREQV---WGV-TFPLDARRNANLAAELEQEFRLLLDRLNAQ  320 (1188)
T ss_pred             HHHhhh---cee-ccccccccccchHHHHHHHHHHHHHHHHHH
Confidence            211111   222 345566665455555555555555544443

>PRK14974 cell division protein FtsY; Provisional

Probab=98.22  E-value=1.2e-05  Score=64.42  Aligned_cols=96  Identities=14%  Similarity=0.041  Sum_probs=55.4

Q ss_pred             EEEEEEeCCCccchhhc----hHHH--hccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCC
Q 028251           55 IKLQIWDTAGQESFRSI----TRSY--YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA  128 (211)
Q Consensus        55 ~~l~l~D~~G~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  128 (211)
                      ..+.|+||+|.......    ...+  ....|.+++|+|+.....  .+.. ...+...   -..--+++||.|..... 
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d--~~~~-a~~f~~~---~~~~giIlTKlD~~~~~-  295 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND--AVEQ-AREFNEA---VGIDGVILTKVDADAKG-  295 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh--HHHH-HHHHHhc---CCCCEEEEeeecCCCCc-
Confidence            45889999996542221    1111  125688899999866432  1111 1222221   22357889999974322 


Q ss_pred             CCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Q 028251          129 VSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK  162 (211)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  162 (211)
                         --+-..+...+.|+..++  +|.+++++...
T Consensus       296 ---G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~  324 (336)
T PRK14974        296 ---GAALSIAYVIGKPILFLG--VGQGYDDLIPF  324 (336)
T ss_pred             ---cHHHHHHHHHCcCEEEEe--CCCChhhcccC
Confidence               223334445688888876  78888776543

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.22  E-value=4e-06  Score=70.40  Aligned_cols=117  Identities=19%  Similarity=0.166  Sum_probs=82.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCC----------------CCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchh
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPV----------------HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR   69 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~   69 (211)
                      .-+|.+.-+-.+||||+-.+.+.-..-..                .....|++.+..-..+...+.+++++||||+-.|.
T Consensus        39 ~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT  118 (721)
T KOG0465|consen   39 IRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFT  118 (721)
T ss_pred             hcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEE
Confidence            44678888889999999998763211000                01122555555545555567889999999999999


Q ss_pred             hchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCC
Q 028251           70 SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR  126 (211)
Q Consensus        70 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  126 (211)
                      -.....++-.|+.|+|++....-.-+...-|++ +.++   ++|.+.++||+|....
T Consensus       119 ~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ-~~ry---~vP~i~FiNKmDRmGa  171 (721)
T KOG0465|consen  119 FEVERALRVLDGAVLVLDAVAGVESQTETVWRQ-MKRY---NVPRICFINKMDRMGA  171 (721)
T ss_pred             EEehhhhhhccCeEEEEEcccceehhhHHHHHH-HHhc---CCCeEEEEehhhhcCC
Confidence            888999999999999999887644344444533 3333   8999999999997543

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.19  E-value=3.1e-06  Score=65.15  Aligned_cols=56  Identities=27%  Similarity=0.346  Sum_probs=34.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCCCCCCCC------CeeeEEEEEEEEECCEEEEEEEEeCCCccc
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDL------TIGVEFGARMVTIDGRPIKLQIWDTAGQES   67 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~   67 (211)
                      .++++|++|+|||||+|+|.+.........      ..-+|.....+.+.+.    .++||||...
T Consensus       122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~~----~liDtPG~~~  183 (245)
T TIGR00157       122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHGG----LIADTPGFNE  183 (245)
T ss_pred             EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCCc----EEEeCCCccc
Confidence            678999999999999999997643221110      0012222233444332    5899999643

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK13796 GTPase YqeH; Provisional

Probab=98.17  E-value=3.2e-06  Score=68.87  Aligned_cols=57  Identities=21%  Similarity=0.253  Sum_probs=38.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCC----CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcc
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQP----VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE   66 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~   66 (211)
                      .++.++|.+|||||||+|+|+......    ......|+|.....+.+++.   ..++||||..
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~  221 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII  221 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence            478999999999999999998643111    11222355566665666543   3599999964

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.17  E-value=3.9e-05  Score=59.97  Aligned_cols=96  Identities=18%  Similarity=0.071  Sum_probs=56.2

Q ss_pred             EEEEEEEeCCCccchhhchH-------HHh-----ccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecC
Q 028251           54 PIKLQIWDTAGQESFRSITR-------SYY-----RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC  121 (211)
Q Consensus        54 ~~~l~l~D~~G~~~~~~~~~-------~~~-----~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  121 (211)
                      .+.+.|+||||.........       ...     ...|.+++|+|+....  ..+.. ...+.+..   .+.-+++||.
T Consensus       154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~~-~~~f~~~~---~~~g~IlTKl  227 (272)
T TIGR00064       154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALEQ-AKVFNEAV---GLTGIILTKL  227 (272)
T ss_pred             CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHHH-HHHHHhhC---CCCEEEEEcc
Confidence            35788999999764333211       111     2378999999997532  22222 22222221   2468889999


Q ss_pred             CCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028251          122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (211)
Q Consensus       122 Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  161 (211)
                      |.....    -.+.......+.|+.+++  +|.+++++-.
T Consensus       228 De~~~~----G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~  261 (272)
T TIGR00064       228 DGTAKG----GIILSIAYELKLPIKFIG--VGEKIDDLAP  261 (272)
T ss_pred             CCCCCc----cHHHHHHHHHCcCEEEEe--CCCChHhCcc
Confidence            974321    233344445688888887  6777766543

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.17  E-value=5.1e-06  Score=67.54  Aligned_cols=59  Identities=20%  Similarity=0.250  Sum_probs=39.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCC----CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccch
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQ----PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF   68 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~   68 (211)
                      .+++++|.+|+|||||+|+|+.....    .......+.+.....+.+++.   +.++||||....
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~---~~l~DtPG~~~~  217 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDG---HSLYDTPGIINS  217 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCC---CEEEECCCCCCh
Confidence            47999999999999999999975321    112222355555555555332   469999996543

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.09  E-value=6.3e-06  Score=64.31  Aligned_cols=58  Identities=22%  Similarity=0.262  Sum_probs=35.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCC------CCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccch
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRF------QPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF   68 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~   68 (211)
                      ..+++|++|+|||||+|+|....-      ......-.=++.....+.+++..   .+.||||...+
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~  229 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSL  229 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCcc
Confidence            578999999999999999986322      11111111122333345665333   37899997543

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.09  E-value=6.1e-05  Score=62.18  Aligned_cols=86  Identities=9%  Similarity=-0.028  Sum_probs=46.2

Q ss_pred             EEEEEEEeCCCccchhhc----hHHH--hccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCC
Q 028251           54 PIKLQIWDTAGQESFRSI----TRSY--YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR  127 (211)
Q Consensus        54 ~~~l~l~D~~G~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  127 (211)
                      .+.+.|+||||.......    ...+  ....|-+++|+|+.-.....   .....+...   -.+--+++||.|.....
T Consensus       182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~---~~a~~F~~~---~~~~g~IlTKlD~~arg  255 (429)
T TIGR01425       182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAE---AQAKAFKDS---VDVGSVIITKLDGHAKG  255 (429)
T ss_pred             CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHH---HHHHHHHhc---cCCcEEEEECccCCCCc
Confidence            467899999996533321    1111  23467899999986542221   111222221   24668889999974321


Q ss_pred             CCCHHHHHHHHHHcCCcEEEEe
Q 028251          128 AVSKEEGEQFAKENGLLFLEAS  149 (211)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~s  149 (211)
                          -.+-......+.|+.+++
T Consensus       256 ----G~aLs~~~~t~~PI~fig  273 (429)
T TIGR01425       256 ----GGALSAVAATKSPIIFIG  273 (429)
T ss_pred             ----cHHhhhHHHHCCCeEEEc
Confidence                112233334566655543

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.07  E-value=1.7e-05  Score=63.31  Aligned_cols=151  Identities=20%  Similarity=0.240  Sum_probs=88.1

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCC-----------------------CeeeEEEEEEEEECC---------
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-----------------------TIGVEFGARMVTIDG---------   52 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~---------   52 (211)
                      ..++++++|...+|||||+--|..+..+...-.                       ..|.+.....+++..         
T Consensus       166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e  245 (591)
T KOG1143|consen  166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE  245 (591)
T ss_pred             eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence            457999999999999999887765443221100                       111111111122111         


Q ss_pred             -EEEEEEEEeCCCccchhhchHHHhc--cccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCC-
Q 028251           53 -RPIKLQIWDTAGQESFRSITRSYYR--GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA-  128 (211)
Q Consensus        53 -~~~~l~l~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-  128 (211)
                       ..--+.++|.+|+..|......-+.  ..|...+|++++....+.. +.-+-.+...   +.|++|+++|+|+.+..- 
T Consensus       246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~AL---~iPfFvlvtK~Dl~~~~~~  321 (591)
T KOG1143|consen  246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAAL---NIPFFVLVTKMDLVDRQGL  321 (591)
T ss_pred             hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHHh---CCCeEEEEEeeccccchhH
Confidence             1123789999999988875443332  3567888998877544322 1222222222   899999999999965411 


Q ss_pred             -----------------------CCHHHHHHHHHH----cCCcEEEEeCCCCCCHHHH
Q 028251          129 -----------------------VSKEEGEQFAKE----NGLLFLEASARTAQNVEEA  159 (211)
Q Consensus       129 -----------------------~~~~~~~~~~~~----~~~~~~~~s~~~~~~i~~~  159 (211)
                                             -+..++..-+.+    +=.|++.+|+..|+|++-+
T Consensus       322 ~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll  379 (591)
T KOG1143|consen  322 KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLL  379 (591)
T ss_pred             HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHH
Confidence                                   011122222222    2346899999999987644

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=98.06  E-value=0.00014  Score=58.08  Aligned_cols=89  Identities=16%  Similarity=0.092  Sum_probs=52.1

Q ss_pred             EEEEEEeCCCccchhhchHHHhc--------cccEEEEEEECCCHHHHHH-HHH-HHHHHHHhcCCCCeEEEEEecCCCC
Q 028251           55 IKLQIWDTAGQESFRSITRSYYR--------GAAGALLVYDITRRETFNH-LSS-WLEDARQHANPNMSIMLVGNKCDLA  124 (211)
Q Consensus        55 ~~l~l~D~~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~~~~~-~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~  124 (211)
                      ....++++.|..........+..        ..|++|-|+|+.+-..... +.. ....+..      -=+|++||.|+.
T Consensus        85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~------AD~ivlNK~Dlv  158 (323)
T COG0523          85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF------ADVIVLNKTDLV  158 (323)
T ss_pred             CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh------CcEEEEecccCC
Confidence            44567888886655444444432        3567999999876432221 222 2222222      238999999997


Q ss_pred             CCCCCCHHHHHHHHHHc--CCcEEEEeCC
Q 028251          125 HRRAVSKEEGEQFAKEN--GLLFLEASAR  151 (211)
Q Consensus       125 ~~~~~~~~~~~~~~~~~--~~~~~~~s~~  151 (211)
                      +...  .+..+...+..  .++++.++..
T Consensus       159 ~~~~--l~~l~~~l~~lnp~A~i~~~~~~  185 (323)
T COG0523         159 DAEE--LEALEARLRKLNPRARIIETSYG  185 (323)
T ss_pred             CHHH--HHHHHHHHHHhCCCCeEEEcccc
Confidence            7553  44455555554  4568877763

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.06  E-value=9.3e-06  Score=64.03  Aligned_cols=60  Identities=20%  Similarity=0.293  Sum_probs=37.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCC------CeeeEEEEEEEEECCEEEEEEEEeCCCccchh
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL------TIGVEFGARMVTIDGRPIKLQIWDTAGQESFR   69 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~   69 (211)
                      -.++++|++|+|||||+|.|++.........      ...++.....+.+....   .++||||...+.
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~---~liDtPG~~~~~  227 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGG---LLIDTPGFREFG  227 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCC---EEEECCCCCccC
Confidence            4689999999999999999997654322111      11123333344444222   489999986543

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=97.99  E-value=8.5e-06  Score=67.27  Aligned_cols=57  Identities=18%  Similarity=0.198  Sum_probs=44.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcc
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE   66 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~   66 (211)
                      .+.|.+||.|+|||||+||.|.+.+.... ..|.|.|....++.+..   .+.|.|+||.-
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsV-S~TPGkTKHFQTi~ls~---~v~LCDCPGLV  370 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKKVSV-SSTPGKTKHFQTIFLSP---SVCLCDCPGLV  370 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCceeee-ecCCCCcceeEEEEcCC---CceecCCCCcc
Confidence            68999999999999999999999886433 34446666666666654   35689999943

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=97.98  E-value=0.00025  Score=56.71  Aligned_cols=85  Identities=11%  Similarity=0.093  Sum_probs=47.7

Q ss_pred             EEEEEEeCCCccchhhchHHHhc--------cccEEEEEEECCCHHHH-HHHHHHHHHHHHhcCCCCeEEEEEecCCCCC
Q 028251           55 IKLQIWDTAGQESFRSITRSYYR--------GAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGNKCDLAH  125 (211)
Q Consensus        55 ~~l~l~D~~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  125 (211)
                      ....++++.|......+...++.        ..+++|.|+|+.+-... .........+..      -=+|++||+|+..
T Consensus        91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~------AD~IvlnK~Dl~~  164 (318)
T PRK11537         91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY------ADRILLTKTDVAG  164 (318)
T ss_pred             CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh------CCEEEEeccccCC
Confidence            45578889997766665554432        24789999998653221 111111222222      2388999999865


Q ss_pred             CCCCCHHHHHHHHHHc--CCcEEEEe
Q 028251          126 RRAVSKEEGEQFAKEN--GLLFLEAS  149 (211)
Q Consensus       126 ~~~~~~~~~~~~~~~~--~~~~~~~s  149 (211)
                      ..    +...+..+..  .++++.++
T Consensus       165 ~~----~~~~~~l~~lnp~a~i~~~~  186 (318)
T PRK11537        165 EA----EKLRERLARINARAPVYTVV  186 (318)
T ss_pred             HH----HHHHHHHHHhCCCCEEEEec
Confidence            32    3444444443  34566554

>PRK00098 GTPase RsgA; Reviewed

Probab=97.98  E-value=1.8e-05  Score=62.81  Aligned_cols=56  Identities=23%  Similarity=0.321  Sum_probs=34.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCC----ee--eEEEEEEEEECCEEEEEEEEeCCCcc
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT----IG--VEFGARMVTIDGRPIKLQIWDTAGQE   66 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~l~l~D~~G~~   66 (211)
                      .++++|++|+|||||+|.|++..........    .|  ++.....+.+++.   ..++||||..
T Consensus       166 ~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~  227 (298)
T PRK00098        166 VTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFS  227 (298)
T ss_pred             eEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcC
Confidence            5889999999999999999976433221111    00  2222233344432   2589999965

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.96  E-value=0.00032  Score=59.27  Aligned_cols=138  Identities=17%  Similarity=0.180  Sum_probs=72.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCC---------CCCC--------------CeeeEEEEEEEE------E-CCEEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQP---------VHDL--------------TIGVEFGARMVT------I-DGRPIK   56 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~---------~~~~--------------~~~~~~~~~~~~------~-~~~~~~   56 (211)
                      -.|+|+|+.|+||||++..|...-...         ..+.              ..+..+....-.      + .....+
T Consensus       351 ~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~D  430 (559)
T PRK12727        351 GVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDYK  430 (559)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccCC
Confidence            478899999999999998886421000         0000              001111100000      0 012467


Q ss_pred             EEEEeCCCccchhhchHH---Hh--ccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCH
Q 028251           57 LQIWDTAGQESFRSITRS---YY--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK  131 (211)
Q Consensus        57 l~l~D~~G~~~~~~~~~~---~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~  131 (211)
                      +.|+||+|..........   .+  ......++|++....  ...+...+..+..    ..+.-+|+||.|...    ..
T Consensus       431 LVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss--~~Dl~eii~~f~~----~~~~gvILTKlDEt~----~l  500 (559)
T PRK12727        431 LVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAH--FSDLDEVVRRFAH----AKPQGVVLTKLDETG----RF  500 (559)
T ss_pred             EEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCC--hhHHHHHHHHHHh----hCCeEEEEecCcCcc----ch
Confidence            889999996433221110   01  012346677777642  2333333333322    246789999999732    23


Q ss_pred             HHHHHHHHHcCCcEEEEeCCCCCCH
Q 028251          132 EEGEQFAKENGLLFLEASARTAQNV  156 (211)
Q Consensus       132 ~~~~~~~~~~~~~~~~~s~~~~~~i  156 (211)
                      -.+.......+.++..++  +|..+
T Consensus       501 G~aLsv~~~~~LPI~yvt--~GQ~V  523 (559)
T PRK12727        501 GSALSVVVDHQMPITWVT--DGQRV  523 (559)
T ss_pred             hHHHHHHHHhCCCEEEEe--CCCCc
Confidence            445566667788877775  44555

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.95  E-value=0.00014  Score=59.08  Aligned_cols=137  Identities=19%  Similarity=0.138  Sum_probs=70.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCC---CCCCCe--------------------eeEEEEEEE--E-----ECCEEE
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQP---VHDLTI--------------------GVEFGARMV--T-----IDGRPI   55 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~---~~~~~~--------------------~~~~~~~~~--~-----~~~~~~   55 (211)
                      .-.++++|++|+||||++..|...-...   .....+                    +.......-  .     ......
T Consensus       137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~  216 (374)
T PRK14722        137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK  216 (374)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence            3468899999999999999987432110   000000                    111100000  0     001234


Q ss_pred             EEEEEeCCCccchhhch---HHHhc---cccEEEEEEECCCH-HHHHHHHHHHHHHHHhcC-C----CCeEEEEEecCCC
Q 028251           56 KLQIWDTAGQESFRSIT---RSYYR---GAAGALLVYDITRR-ETFNHLSSWLEDARQHAN-P----NMSIMLVGNKCDL  123 (211)
Q Consensus        56 ~l~l~D~~G~~~~~~~~---~~~~~---~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~-~----~~p~ivv~nK~Dl  123 (211)
                      .+.++||+|........   ...+.   ...-.++|++++.. .....+   +..+..... +    ..+--++++|.|-
T Consensus       217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~ev---i~~f~~~~~~p~~~~~~~~~~I~TKlDE  293 (374)
T PRK14722        217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEV---VQAYRSAAGQPKAALPDLAGCILTKLDE  293 (374)
T ss_pred             CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHH---HHHHHHhhcccccccCCCCEEEEecccc
Confidence            68899999965433221   11122   23345888888764 332322   222222210 0    0134677899996


Q ss_pred             CCCCCCCHHHHHHHHHHcCCcEEEEe
Q 028251          124 AHRRAVSKEEGEQFAKENGLLFLEAS  149 (211)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~s  149 (211)
                      ..    ..-.+..+....+.|+..++
T Consensus       294 t~----~~G~~l~~~~~~~lPi~yvt  315 (374)
T PRK14722        294 AS----NLGGVLDTVIRYKLPVHYVS  315 (374)
T ss_pred             CC----CccHHHHHHHHHCcCeEEEe
Confidence            43    23345566666788876665

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.94  E-value=6.5e-05  Score=58.73  Aligned_cols=91  Identities=22%  Similarity=0.191  Sum_probs=64.3

Q ss_pred             chHHHhccccEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEe
Q 028251           71 ITRSYYRGAAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEAS  149 (211)
Q Consensus        71 ~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s  149 (211)
                      +..-...+.|-.|+|+++.+|+ +...+..++-....   .+...+|++||+|+.+......++........+++++.+|
T Consensus        72 L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s  148 (301)
T COG1162          72 LIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVS  148 (301)
T ss_pred             eeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEec
Confidence            3444445678888899998876 33444444333333   3777888899999976554433456667777999999999


Q ss_pred             CCCCCCHHHHHHHHH
Q 028251          150 ARTAQNVEEAFIKTA  164 (211)
Q Consensus       150 ~~~~~~i~~~~~~i~  164 (211)
                      ++++++++++.+.+.
T Consensus       149 ~~~~~~~~~l~~~l~  163 (301)
T COG1162         149 AKNGDGLEELAELLA  163 (301)
T ss_pred             CcCcccHHHHHHHhc
Confidence            999999998876654

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.94  E-value=6.6e-05  Score=56.86  Aligned_cols=115  Identities=17%  Similarity=0.305  Sum_probs=71.3

Q ss_pred             eeeEEEEcCCCC--CHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCc-cchhhchHHHhccccEE
Q 028251            6 LFKYIIIGDTGV--GKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ-ESFRSITRSYYRGAAGA   82 (211)
Q Consensus         6 ~~~i~vvG~~~~--GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~-~~~~~~~~~~~~~~d~~   82 (211)
                      +.-++|+|..|+  ||.+|+.+|....+.........+.+...++.-......+.+.-.+-- +.+.. .........++
T Consensus         4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lp-n~~~a~pl~a~   82 (418)
T KOG4273|consen    4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLP-NAEIAEPLQAF   82 (418)
T ss_pred             CceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccC-CcccccceeeE
Confidence            456789999999  999999999988887766655555555443322222222222222211 11111 12233456689


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEecCCCC
Q 028251           83 LLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLA  124 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~  124 (211)
                      ++|||++...++..+..|+......   ... .+.++||.|..
T Consensus        83 vmvfdlse~s~l~alqdwl~htdin---sfdillcignkvdrv  122 (418)
T KOG4273|consen   83 VMVFDLSEKSGLDALQDWLPHTDIN---SFDILLCIGNKVDRV  122 (418)
T ss_pred             EEEEeccchhhhHHHHhhccccccc---cchhheecccccccc
Confidence            9999999999999999997643222   122 35558999964

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.93  E-value=4.6e-05  Score=58.56  Aligned_cols=60  Identities=28%  Similarity=0.496  Sum_probs=43.3

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCC--CeeeEEEEEEEEE--CCEEEEEEEEeCCC
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL--TIGVEFGARMVTI--DGRPIKLQIWDTAG   64 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~l~l~D~~G   64 (211)
                      ..++|+-+|..|.||||||+.|.+-.+.....+  ..++.....++.+  .+..+++.++||.|
T Consensus        41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG  104 (406)
T KOG3859|consen   41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG  104 (406)
T ss_pred             ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence            568999999999999999999998887543222  1233333333333  55667889999999

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.89  E-value=0.00044  Score=57.16  Aligned_cols=138  Identities=18%  Similarity=0.120  Sum_probs=72.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCe-----------------------eeEEEEEEEE-------ECCEEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI-----------------------GVEFGARMVT-------IDGRPIK   56 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~-----------------------~~~~~~~~~~-------~~~~~~~   56 (211)
                      -.|+++|++|+||||++..|.+...........                       +.......-.       ..-....
T Consensus       192 ~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~d  271 (420)
T PRK14721        192 GVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGKH  271 (420)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCCC
Confidence            479999999999999999886531100000000                       1110000000       0012235


Q ss_pred             EEEEeCCCccchhh----chHHHh--ccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCC
Q 028251           57 LQIWDTAGQESFRS----ITRSYY--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS  130 (211)
Q Consensus        57 l~l~D~~G~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~  130 (211)
                      +.++||+|......    ....+.  ....-.++|+|++...  ..+..+...+..    --+--++++|.|-..    .
T Consensus       272 ~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~--~~~~~~~~~f~~----~~~~~~I~TKlDEt~----~  341 (420)
T PRK14721        272 MVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSG--DTLDEVISAYQG----HGIHGCIITKVDEAA----S  341 (420)
T ss_pred             EEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCH--HHHHHHHHHhcC----CCCCEEEEEeeeCCC----C
Confidence            78999999554222    122221  1234577888987532  223333322221    233467899999643    2


Q ss_pred             HHHHHHHHHHcCCcEEEEeCCCCCCH
Q 028251          131 KEEGEQFAKENGLLFLEASARTAQNV  156 (211)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~s~~~~~~i  156 (211)
                      .-.+..++...+.++..++  +|.+|
T Consensus       342 ~G~~l~~~~~~~lPi~yvt--~Gq~V  365 (420)
T PRK14721        342 LGIALDAVIRRKLVLHYVT--NGQKV  365 (420)
T ss_pred             ccHHHHHHHHhCCCEEEEE--CCCCc
Confidence            2345566667788877775  55565

>PRK13695 putative NTPase; Provisional

Probab=97.88  E-value=0.00042  Score=50.48  Aligned_cols=22  Identities=41%  Similarity=0.688  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHh
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ++|+|.|++|+|||||++.+.+
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~   22 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAE   22 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999998754

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=97.85  E-value=5.2e-05  Score=55.99  Aligned_cols=111  Identities=16%  Similarity=0.181  Sum_probs=59.6

Q ss_pred             EEEEEeCCCccchhh---chHHHh---cccc---EEEEEEECCC-HHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCC
Q 028251           56 KLQIWDTAGQESFRS---ITRSYY---RGAA---GALLVYDITR-RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH  125 (211)
Q Consensus        56 ~l~l~D~~G~~~~~~---~~~~~~---~~~d---~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  125 (211)
                      .+.++|+||+-+...   ..+.+.   ..-+   .+++++|..= -++...+...+..+.....-..|.|=+++|.|+..
T Consensus        99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLlk  178 (273)
T KOG1534|consen   99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLLK  178 (273)
T ss_pred             CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHhh
Confidence            367899999876544   222222   1112   4566666421 12233333333333333334899999999999853


Q ss_pred             CCCCCHHHHHH------------------------HHH-------HcC-CcEEEEeCCCCCCHHHHHHHHHHHHH
Q 028251          126 RRAVSKEEGEQ------------------------FAK-------ENG-LLFLEASARTAQNVEEAFIKTAAKIL  168 (211)
Q Consensus       126 ~~~~~~~~~~~------------------------~~~-------~~~-~~~~~~s~~~~~~i~~~~~~i~~~~~  168 (211)
                      .  ...++.++                        +.+       ..+ +.|.+....+.++++.++..|-..+.
T Consensus       179 ~--~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~aiQ  251 (273)
T KOG1534|consen  179 D--KNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAIQ  251 (273)
T ss_pred             h--hhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHHH
Confidence            2  11111111                        111       122 24777877777888888777766654

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.83  E-value=0.00026  Score=51.48  Aligned_cols=84  Identities=15%  Similarity=0.046  Sum_probs=45.3

Q ss_pred             EEEEEEEeCCCccchhh----chHHHh--ccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCC
Q 028251           54 PIKLQIWDTAGQESFRS----ITRSYY--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR  127 (211)
Q Consensus        54 ~~~l~l~D~~G~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  127 (211)
                      ...+.+.|++|......    ....+.  ...+.+++|+|......   ...+...+....  + ...++.||.|.....
T Consensus        82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~--~-~~~viltk~D~~~~~  155 (173)
T cd03115          82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL--G-ITGVILTKLDGDARG  155 (173)
T ss_pred             CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC--C-CCEEEEECCcCCCCc
Confidence            34577899999743211    111111  24889999999865432   122333332222  2 356778999975422


Q ss_pred             CCCHHHHHHHHHHcCCcEEE
Q 028251          128 AVSKEEGEQFAKENGLLFLE  147 (211)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~  147 (211)
                          ......+...++|+..
T Consensus       156 ----g~~~~~~~~~~~p~~~  171 (173)
T cd03115         156 ----GAALSIRAVTGKPIKF  171 (173)
T ss_pred             ----chhhhhHHHHCcCeEe
Confidence                2222355556666543

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=97.82  E-value=4.9e-05  Score=55.66  Aligned_cols=79  Identities=18%  Similarity=0.145  Sum_probs=40.8

Q ss_pred             EEEEEEeCCCccchhhc-----hHHHhccccEEEEEEECCCHHHHHHHHHH-HHHHHHhcCCCCeEEEEEecCCCCCCCC
Q 028251           55 IKLQIWDTAGQESFRSI-----TRSYYRGAAGALLVYDITRRETFNHLSSW-LEDARQHANPNMSIMLVGNKCDLAHRRA  128 (211)
Q Consensus        55 ~~l~l~D~~G~~~~~~~-----~~~~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  128 (211)
                      ....+.++.|......+     .....-..+.+|.|+|+.+-.....+... ...+.      .-=+|++||+|+.+.. 
T Consensus        85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~------~ADvIvlnK~D~~~~~-  157 (178)
T PF02492_consen   85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIA------FADVIVLNKIDLVSDE-  157 (178)
T ss_dssp             -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHC------T-SEEEEE-GGGHHHH-
T ss_pred             cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcch------hcCEEEEeccccCChh-
Confidence            45667788885544443     01112346789999999764322333332 22332      2238999999986543 


Q ss_pred             CCHHHHHHHHHH
Q 028251          129 VSKEEGEQFAKE  140 (211)
Q Consensus       129 ~~~~~~~~~~~~  140 (211)
                      ...+..++..++
T Consensus       158 ~~i~~~~~~ir~  169 (178)
T PF02492_consen  158 QKIERVREMIRE  169 (178)
T ss_dssp             --HHHHHHHHHH
T ss_pred             hHHHHHHHHHHH
Confidence            122444444444

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>cd03114 ArgK-like The function of this protein family is unkown

Probab=97.80  E-value=0.00017  Score=51.13  Aligned_cols=58  Identities=16%  Similarity=0.134  Sum_probs=35.8

Q ss_pred             EEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCC
Q 028251           54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD  122 (211)
Q Consensus        54 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  122 (211)
                      .+.+.|.||+|..   .....++..+|-+|+|....-.+.+.-+   ...+.     ..--++++||.|
T Consensus        91 ~~D~iiIDtaG~~---~~~~~~~~~Ad~~ivv~tpe~~D~y~~~---k~~~~-----~~~~~~~~~k~~  148 (148)
T cd03114          91 GFDVIIVETVGVG---QSEVDIASMADTTVVVMAPGAGDDIQAI---KAGIM-----EIADIVVVNKAD  148 (148)
T ss_pred             CCCEEEEECCccC---hhhhhHHHhCCEEEEEECCCchhHHHHh---hhhHh-----hhcCEEEEeCCC
Confidence            4678899998864   2233588889999988887632221111   11222     222488899987

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.77  E-value=0.00041  Score=50.74  Aligned_cols=23  Identities=22%  Similarity=0.329  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .++++|++|+|||||++.+.+..
T Consensus        27 ~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          27 VIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            58899999999999999998654

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.71  E-value=0.00069  Score=59.73  Aligned_cols=142  Identities=19%  Similarity=0.118  Sum_probs=73.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCC-----------------------eeeEEEEEEEEE--------CCEEEE
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT-----------------------IGVEFGARMVTI--------DGRPIK   56 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~-----------------------~~~~~~~~~~~~--------~~~~~~   56 (211)
                      -|+++|++|+||||++..|...-........                       .+..+.... ..        ......
T Consensus       187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~-~~~~l~~al~~~~~~D  265 (767)
T PRK14723        187 VLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVK-DAADLRFALAALGDKH  265 (767)
T ss_pred             EEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccC-CHHHHHHHHHHhcCCC
Confidence            5799999999999999998743211100000                       011110000 00        012346


Q ss_pred             EEEEeCCCccchhh----chHHH--hccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCC
Q 028251           57 LQIWDTAGQESFRS----ITRSY--YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS  130 (211)
Q Consensus        57 l~l~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~  130 (211)
                      +.|+||+|......    ....+  ....+-.++|+|++...  ..+......+..... --+--+|++|.|-..    .
T Consensus       266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~--~~l~~i~~~f~~~~~-~~i~glIlTKLDEt~----~  338 (767)
T PRK14723        266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHG--DTLNEVVHAYRHGAG-EDVDGCIITKLDEAT----H  338 (767)
T ss_pred             EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcH--HHHHHHHHHHhhccc-CCCCEEEEeccCCCC----C
Confidence            88999999443222    11111  12344678899887531  222222233322110 124467899999643    2


Q ss_pred             HHHHHHHHHHcCCcEEEEeCCCCCCH-HHH
Q 028251          131 KEEGEQFAKENGLLFLEASARTAQNV-EEA  159 (211)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~s~~~~~~i-~~~  159 (211)
                      .-.+-.+....++|+..++  +|.+| +++
T Consensus       339 ~G~iL~i~~~~~lPI~yit--~GQ~VPdDL  366 (767)
T PRK14723        339 LGPALDTVIRHRLPVHYVS--TGQKVPEHL  366 (767)
T ss_pred             ccHHHHHHHHHCCCeEEEe--cCCCChhhc
Confidence            2334556666788877775  55666 444

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.69  E-value=0.00024  Score=41.20  Aligned_cols=47  Identities=19%  Similarity=0.219  Sum_probs=29.1

Q ss_pred             HhccccEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCeEEEEEecCC
Q 028251           75 YYRGAAGALLVYDITRRE--TFNHLSSWLEDARQHANPNMSIMLVGNKCD  122 (211)
Q Consensus        75 ~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  122 (211)
                      .-+-.++++|++|++...  +.+.-..++..++.... ++|+++|.||+|
T Consensus        10 L~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-~~P~i~V~nK~D   58 (58)
T PF06858_consen   10 LAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-NKPVIVVLNKID   58 (58)
T ss_dssp             GGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-TS-EEEEE--TT
T ss_pred             HHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-CCCEEEEEeccC
Confidence            334567999999998843  44444456677766654 899999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.69  E-value=0.00057  Score=55.83  Aligned_cols=143  Identities=17%  Similarity=0.112  Sum_probs=74.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCC---------C-CCC-C----------CeeeEEEEEEE--E----E---C-CEE
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQ---------P-VHD-L----------TIGVEFGARMV--T----I---D-GRP   54 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~---------~-~~~-~----------~~~~~~~~~~~--~----~---~-~~~   54 (211)
                      .-.|+++|++|+||||++..|...-..         . .+. .          ..+..+....-  .    +   . ...
T Consensus       241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~  320 (436)
T PRK11889        241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR  320 (436)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence            357899999999999999998532110         0 000 0          00111110000  0    0   0 013


Q ss_pred             EEEEEEeCCCccchhh----chHHHh--ccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCC
Q 028251           55 IKLQIWDTAGQESFRS----ITRSYY--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA  128 (211)
Q Consensus        55 ~~l~l~D~~G~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  128 (211)
                      ..+.|+||+|......    ....++  ...+.+++|+|++-..  ..+......+..    -..--++++|.|-...  
T Consensus       321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~----~~idglI~TKLDET~k--  392 (436)
T PRK11889        321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD----IHIDGIVFTKFDETAS--  392 (436)
T ss_pred             CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcC----CCCCEEEEEcccCCCC--
Confidence            5788999999654222    122222  2356788899875432  222233333322    2234778999996442  


Q ss_pred             CCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHH
Q 028251          129 VSKEEGEQFAKENGLLFLEASARTAQNVEEAF  160 (211)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~  160 (211)
                        .-.+-..+...+.|+..++  +|.++.+-+
T Consensus       393 --~G~iLni~~~~~lPIsyit--~GQ~VPeDI  420 (436)
T PRK11889        393 --SGELLKIPAVSSAPIVLMT--DGQDVKKNI  420 (436)
T ss_pred             --ccHHHHHHHHHCcCEEEEe--CCCCCCcch
Confidence              2334556666788876664  444444433

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.68  E-value=0.00024  Score=51.45  Aligned_cols=135  Identities=22%  Similarity=0.257  Sum_probs=63.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeC-CCc---------------------
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT-AGQ---------------------   65 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~-~G~---------------------   65 (211)
                      +|.+.|++|+|||||+++++..-.... .+..|.-.  ..+.-++...-+.+.|. .|.                     
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~~~-~~v~Gf~t--~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~   77 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKKKG-LPVGGFYT--EEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD   77 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHHTC-GGEEEEEE--EEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhccC-CccceEEe--ecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence            689999999999999999874421111 11112111  11122333334444444 220                     


Q ss_pred             -cchhh----chHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecC-CCCCCCCCCHHHHHHHHH
Q 028251           66 -ESFRS----ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC-DLAHRRAVSKEEGEQFAK  139 (211)
Q Consensus        66 -~~~~~----~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~-Dl~~~~~~~~~~~~~~~~  139 (211)
                       +.+..    .....+..+|  ++|+|=--+-. .....|.+.+......++|++.++.+. +.        ...+.+..
T Consensus        78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~mE-l~~~~F~~~v~~~l~s~~~vi~vv~~~~~~--------~~l~~i~~  146 (168)
T PF03266_consen   78 LESFEEIGLPALRNALSSSD--LIVIDEIGKME-LKSPGFREAVEKLLDSNKPVIGVVHKRSDN--------PFLEEIKR  146 (168)
T ss_dssp             HHHHHCCCCCCCHHHHHCCH--EEEE---STTC-CC-CHHHHHHHHHHCTTSEEEEE--SS--S--------CCHHHHHT
T ss_pred             HHHHHHHHHHHHHhhcCCCC--EEEEeccchhh-hcCHHHHHHHHHHHcCCCcEEEEEecCCCc--------HHHHHHHh
Confidence             11111    2222234555  66777222100 001234455555454578988888776 32        12344555


Q ss_pred             HcCCcEEEEeCCCCCCH
Q 028251          140 ENGLLFLEASARTAQNV  156 (211)
Q Consensus       140 ~~~~~~~~~s~~~~~~i  156 (211)
                      ..++.++.++..+.+.+
T Consensus       147 ~~~~~i~~vt~~NRd~l  163 (168)
T PF03266_consen  147 RPDVKIFEVTEENRDAL  163 (168)
T ss_dssp             TTTSEEEE--TTTCCCH
T ss_pred             CCCcEEEEeChhHHhhH
Confidence            56788888876665544

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.67  E-value=0.00012  Score=60.91  Aligned_cols=84  Identities=17%  Similarity=0.035  Sum_probs=46.3

Q ss_pred             EEEEEeCCCccchhhch----H--HHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC
Q 028251           56 KLQIWDTAGQESFRSIT----R--SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV  129 (211)
Q Consensus        56 ~l~l~D~~G~~~~~~~~----~--~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~  129 (211)
                      .+.|+||||........    .  .....+|.+++|+|+....  ..+ .....+...   -...-+++||.|....   
T Consensus       177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq--~av-~~a~~F~~~---l~i~gvIlTKlD~~a~---  247 (437)
T PRK00771        177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ--QAK-NQAKAFHEA---VGIGGIIITKLDGTAK---  247 (437)
T ss_pred             CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH--HHH-HHHHHHHhc---CCCCEEEEecccCCCc---
Confidence            68899999965433211    1  1233678899999987642  111 222222221   1134678899996432   


Q ss_pred             CHHHHHHHHHHcCCcEEEEe
Q 028251          130 SKEEGEQFAKENGLLFLEAS  149 (211)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~s  149 (211)
                       .-.+-......+.|+.+++
T Consensus       248 -~G~~ls~~~~~~~Pi~fig  266 (437)
T PRK00771        248 -GGGALSAVAETGAPIKFIG  266 (437)
T ss_pred             -ccHHHHHHHHHCcCEEEEe
Confidence             1223444555677766554

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=97.64  E-value=0.00028  Score=58.55  Aligned_cols=128  Identities=23%  Similarity=0.246  Sum_probs=81.8

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCC------------C--CCCCeeeEEEEEEEEE----------------CCEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP------------V--HDLTIGVEFGARMVTI----------------DGRP   54 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~------------~--~~~~~~~~~~~~~~~~----------------~~~~   54 (211)
                      +.-++-|+.+..-|||||...|.......            .  .....++++...-+.+                ++..
T Consensus        18 NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~   97 (842)
T KOG0469|consen   18 NIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNG   97 (842)
T ss_pred             ccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcc
Confidence            34467788899999999999986432111            1  0111233443333332                3456


Q ss_pred             EEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCC-CCCCCCHHH
Q 028251           55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA-HRRAVSKEE  133 (211)
Q Consensus        55 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~-~~~~~~~~~  133 (211)
                      +.++++|.||+-.|.+...+.++-.|+.++|+|..+..-.+...-+.+.+.+    ++.-+++.||.|.. -+-+++.++
T Consensus        98 FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E----RIkPvlv~NK~DRAlLELq~~~Ee  173 (842)
T KOG0469|consen   98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE----RIKPVLVMNKMDRALLELQLSQEE  173 (842)
T ss_pred             eeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh----hccceEEeehhhHHHHhhcCCHHH
Confidence            7789999999999999999999999999999999875332222233333333    34457789999952 123455555


Q ss_pred             HHH
Q 028251          134 GEQ  136 (211)
Q Consensus       134 ~~~  136 (211)
                      .-+
T Consensus       174 Lyq  176 (842)
T KOG0469|consen  174 LYQ  176 (842)
T ss_pred             HHH
Confidence            443

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.63  E-value=0.00032  Score=49.15  Aligned_cols=107  Identities=11%  Similarity=0.139  Sum_probs=61.1

Q ss_pred             EEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEECC
Q 028251           10 IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT   89 (211)
Q Consensus        10 ~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~   89 (211)
                      ..-|..|+|||++.-.+...-. .......-.+...   ......+.+.++|+|+..  .......+..+|.++++.+.+
T Consensus         4 ~~~~kgg~gkt~~~~~~a~~~~-~~~~~~~~vd~D~---~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~   77 (139)
T cd02038           4 VTSGKGGVGKTNISANLALALA-KLGKRVLLLDADL---GLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE   77 (139)
T ss_pred             EEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEECCC---CCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC
Confidence            3457889999998666542211 0111110001000   000111568899999753  333456788999999999986


Q ss_pred             CHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCC
Q 028251           90 RRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA  124 (211)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  124 (211)
                      . .++..+...++.+.... ...++.+++|+.+..
T Consensus        78 ~-~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~~  110 (139)
T cd02038          78 P-TSITDAYALIKKLAKQL-RVLNFRVVVNRAESP  110 (139)
T ss_pred             h-hHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCCH
Confidence            4 34444444455554332 356788999999753

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.62  E-value=0.00056  Score=50.87  Aligned_cols=92  Identities=21%  Similarity=0.105  Sum_probs=51.0

Q ss_pred             EEEEEEeCCCccchhh----chHHHh--ccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCC
Q 028251           55 IKLQIWDTAGQESFRS----ITRSYY--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA  128 (211)
Q Consensus        55 ~~l~l~D~~G~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  128 (211)
                      ..+.|+||+|......    ....++  ...+-+++|++++....  .+... ..+....  + +--++++|.|-..   
T Consensus        84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~--~~~~~-~~~~~~~--~-~~~lIlTKlDet~---  154 (196)
T PF00448_consen   84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE--DLEQA-LAFYEAF--G-IDGLILTKLDETA---  154 (196)
T ss_dssp             SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH--HHHHH-HHHHHHS--S-TCEEEEESTTSSS---
T ss_pred             CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH--HHHHH-HHHhhcc--c-CceEEEEeecCCC---
Confidence            4578999999654332    111111  24667889999876532  22222 2222221  1 2356799999643   


Q ss_pred             CCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Q 028251          129 VSKEEGEQFAKENGLLFLEASARTAQNVEE  158 (211)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  158 (211)
                       ..-..-..+...+.|+-.++  +|.++++
T Consensus       155 -~~G~~l~~~~~~~~Pi~~it--~Gq~V~D  181 (196)
T PF00448_consen  155 -RLGALLSLAYESGLPISYIT--TGQRVDD  181 (196)
T ss_dssp             -TTHHHHHHHHHHTSEEEEEE--SSSSTTG
T ss_pred             -CcccceeHHHHhCCCeEEEE--CCCChhc
Confidence             22445566667888877775  4445533

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=97.61  E-value=0.0047  Score=44.44  Aligned_cols=142  Identities=8%  Similarity=0.019  Sum_probs=89.8

Q ss_pred             CCCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhcccc
Q 028251            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA   80 (211)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d   80 (211)
                      |+......|++||..+.++..|..++......        ....   ++...     .+-+ |  .+...+    -...|
T Consensus        10 lp~ln~atiLLVg~e~~~~~~LA~a~l~~~~~--------~~l~---Vh~a~-----sLPL-p--~e~~~l----RprID   66 (176)
T PF11111_consen   10 LPELNTATILLVGTEEALLQQLAEAMLEEDKE--------FKLK---VHLAK-----SLPL-P--SENNNL----RPRID   66 (176)
T ss_pred             CCCcceeEEEEecccHHHHHHHHHHHHhhccc--------eeEE---EEEec-----cCCC-c--ccccCC----CceeE
Confidence            45667899999999999999999999853210        1111   11100     0111 1  111111    23579


Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHH
Q 028251           81 GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF  160 (211)
Q Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~  160 (211)
                      .++|++|.....++..+..-+..+....-.++-++++.| ....+.-.+...+..+++..++.+++.+.-...++...+=
T Consensus        67 lIVFvinl~sk~SL~~ve~SL~~vd~~fflGKVCfl~t~-a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~lA  145 (176)
T PF11111_consen   67 LIVFVINLHSKYSLQSVEASLSHVDPSFFLGKVCFLATN-AGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSLA  145 (176)
T ss_pred             EEEEEEecCCcccHHHHHHHHhhCChhhhccceEEEEcC-CCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHHHH
Confidence            999999999999988887766655332222455555544 3334445577899999999999999998877765544443


Q ss_pred             HHHHHH
Q 028251          161 IKTAAK  166 (211)
Q Consensus       161 ~~i~~~  166 (211)
                      +.|.+.
T Consensus       146 qRLL~~  151 (176)
T PF11111_consen  146 QRLLRM  151 (176)
T ss_pred             HHHHHH
Confidence            344433

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.60  E-value=0.0054  Score=50.08  Aligned_cols=134  Identities=16%  Similarity=0.097  Sum_probs=70.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCe---eeEEEEEE---------------EE--E----------CCEEE
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI---GVEFGARM---------------VT--I----------DGRPI   55 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~---~~~~~~~~---------------~~--~----------~~~~~   55 (211)
                      .=.|++|||.||||||-+-.|...-........+   +.+.+...               +.  .          .-...
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~  282 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC  282 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence            3468999999999999988876443311111111   11111000               00  0          11345


Q ss_pred             EEEEEeCCCccchhh----chHHHhccc--cEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC
Q 028251           56 KLQIWDTAGQESFRS----ITRSYYRGA--AGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV  129 (211)
Q Consensus        56 ~l~l~D~~G~~~~~~----~~~~~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~  129 (211)
                      ++.|+||.|...+..    ....++..+  .-+-+|++++...  ..+...+..+...    ..--++++|.|-.    -
T Consensus       283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--~dlkei~~~f~~~----~i~~~I~TKlDET----~  352 (407)
T COG1419         283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--EDLKEIIKQFSLF----PIDGLIFTKLDET----T  352 (407)
T ss_pred             CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--HHHHHHHHHhccC----CcceeEEEccccc----C
Confidence            688999999665444    233333333  2355577776542  3333443333322    1225678999953    2


Q ss_pred             CHHHHHHHHHHcCCcEEEEe
Q 028251          130 SKEEGEQFAKENGLLFLEAS  149 (211)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~s  149 (211)
                      ..-.......+.+.|+-.++
T Consensus       353 s~G~~~s~~~e~~~PV~YvT  372 (407)
T COG1419         353 SLGNLFSLMYETRLPVSYVT  372 (407)
T ss_pred             chhHHHHHHHHhCCCeEEEe
Confidence            33445566666777765554

>KOG2484 consensus GTPase [General function prediction only]

Probab=97.59  E-value=6.2e-05  Score=60.49  Aligned_cols=57  Identities=26%  Similarity=0.342  Sum_probs=45.0

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCc
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ   65 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~   65 (211)
                      ..+++.|+|-|++||||+||+|......... ...|.+.....+.++.   .+.|.|.||.
T Consensus       251 ~sIrvGViG~PNVGKSSvINsL~~~k~C~vg-~~pGvT~smqeV~Ldk---~i~llDsPgi  307 (435)
T KOG2484|consen  251 TSIRVGIIGYPNVGKSSVINSLKRRKACNVG-NVPGVTRSMQEVKLDK---KIRLLDSPGI  307 (435)
T ss_pred             cceEeeeecCCCCChhHHHHHHHHhccccCC-CCccchhhhhheeccC---CceeccCCce
Confidence            4689999999999999999999988764433 3347777777777665   3568999994

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.58  E-value=0.0012  Score=55.43  Aligned_cols=92  Identities=18%  Similarity=0.114  Sum_probs=49.2

Q ss_pred             EEEEEeCCCccchhh---chHHHhcc---ccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC
Q 028251           56 KLQIWDTAGQESFRS---ITRSYYRG---AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV  129 (211)
Q Consensus        56 ~l~l~D~~G~~~~~~---~~~~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~  129 (211)
                      .+.++||+|......   .....+..   ..-.++|+|.....  ..+....   ..+.. ....-+++||.|-..    
T Consensus       336 d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--~~l~~i~---~~f~~-~~~~g~IlTKlDet~----  405 (484)
T PRK06995        336 HIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--DTLNEVV---QAYRG-PGLAGCILTKLDEAA----  405 (484)
T ss_pred             CeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--HHHHHHH---HHhcc-CCCCEEEEeCCCCcc----
Confidence            567999999443221   11112211   12367888886532  2222222   22221 234467789999633    


Q ss_pred             CHHHHHHHHHHcCCcEEEEeCCCCCCH-HHH
Q 028251          130 SKEEGEQFAKENGLLFLEASARTAQNV-EEA  159 (211)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~s~~~~~~i-~~~  159 (211)
                      ..-.+..+....++++..++  +|.+| +++
T Consensus       406 ~~G~~l~i~~~~~lPI~yvt--~GQ~VPeDL  434 (484)
T PRK06995        406 SLGGALDVVIRYKLPLHYVS--NGQRVPEDL  434 (484)
T ss_pred             cchHHHHHHHHHCCCeEEEe--cCCCChhhh
Confidence            23445566777788877774  56666 443

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.58  E-value=0.00089  Score=44.25  Aligned_cols=82  Identities=18%  Similarity=0.195  Sum_probs=49.3

Q ss_pred             EEEEc-CCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEE
Q 028251            9 YIIIG-DTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD   87 (211)
Q Consensus         9 i~vvG-~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   87 (211)
                      |.+.| ..|+||||+...+...-.. ...+.       ..+..+.. +.+.++|+|+.....  ....+..+|.+|++++
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~v-------l~~d~d~~-~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~   70 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALAR-RGKRV-------LLIDLDPQ-YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQ   70 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHh-CCCcE-------EEEeCCCC-CCEEEEeCcCCCCHH--HHHHHHHCCEEEEecc
Confidence            56666 5689999987766522211 11111       11222222 668899999865333  3367788999999998


Q ss_pred             CCCHHHHHHHHHHHH
Q 028251           88 ITRRETFNHLSSWLE  102 (211)
Q Consensus        88 ~~~~~~~~~~~~~~~  102 (211)
                      .+ ..++..+..+++
T Consensus        71 ~~-~~s~~~~~~~~~   84 (104)
T cd02042          71 PS-PLDLDGLEKLLE   84 (104)
T ss_pred             CC-HHHHHHHHHHHH
Confidence            75 445555555544

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.56  E-value=0.0037  Score=52.10  Aligned_cols=91  Identities=19%  Similarity=0.108  Sum_probs=51.5

Q ss_pred             EEEEEEEeCCCccchh----hchHHHhc---cccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCC
Q 028251           54 PIKLQIWDTAGQESFR----SITRSYYR---GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR  126 (211)
Q Consensus        54 ~~~l~l~D~~G~~~~~----~~~~~~~~---~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  126 (211)
                      ...+.|+||+|.....    .....++.   ...-+++|++++-..  ..+...+..+...   + +.-++++|.|-.. 
T Consensus       299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--~~l~~~~~~f~~~---~-~~~vI~TKlDet~-  371 (424)
T PRK05703        299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--EDLKDIYKHFSRL---P-LDGLIFTKLDETS-  371 (424)
T ss_pred             CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--HHHHHHHHHhCCC---C-CCEEEEecccccc-
Confidence            3578899999965433    12333333   223567788875432  2233333333211   2 2368899999633 


Q ss_pred             CCCCHHHHHHHHHHcCCcEEEEeCCCCCCH
Q 028251          127 RAVSKEEGEQFAKENGLLFLEASARTAQNV  156 (211)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  156 (211)
                         ..-.+.......+.++..++  +|.+|
T Consensus       372 ---~~G~i~~~~~~~~lPv~yit--~Gq~V  396 (424)
T PRK05703        372 ---SLGSILSLLIESGLPISYLT--NGQRV  396 (424)
T ss_pred             ---cccHHHHHHHHHCCCEEEEe--CCCCC
Confidence               22346677777888877775  44554

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.55  E-value=0.001  Score=42.90  Aligned_cols=69  Identities=19%  Similarity=0.209  Sum_probs=44.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhc-hHHHhccccEEEEEEE
Q 028251            9 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI-TRSYYRGAAGALLVYD   87 (211)
Q Consensus         9 i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~-~~~~~~~~d~~i~v~d   87 (211)
                      +++.|..|+||||+...+...-...      +..    ...++    .+.++|+++....... .......+|.++++++
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~------g~~----v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~   67 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKR------GKR----VLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT   67 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHC------CCe----EEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence            6788999999999988876432111      111    12222    6779999986533321 2455667899999998


Q ss_pred             CCCH
Q 028251           88 ITRR   91 (211)
Q Consensus        88 ~~~~   91 (211)
                      ....
T Consensus        68 ~~~~   71 (99)
T cd01983          68 PEAL   71 (99)
T ss_pred             Cchh
Confidence            7654

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.53  E-value=0.0014  Score=53.99  Aligned_cols=134  Identities=22%  Similarity=0.185  Sum_probs=69.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCC-CCCC-------CCC--------------CeeeEEEEEE-E-----EECCEEEEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKR-FQPV-------HDL--------------TIGVEFGARM-V-----TIDGRPIKLQ   58 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~-~~~~-------~~~--------------~~~~~~~~~~-~-----~~~~~~~~l~   58 (211)
                      .-++++|++|+||||++..|.... ....       .+.              ..+....... .     .+.....++.
T Consensus       224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V  303 (432)
T PRK12724        224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI  303 (432)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence            458899999999999999986421 0000       000              0011111000 0     0011245678


Q ss_pred             EEeCCCccchhh----chHHHhc-----cccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC
Q 028251           59 IWDTAGQESFRS----ITRSYYR-----GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV  129 (211)
Q Consensus        59 l~D~~G~~~~~~----~~~~~~~-----~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~  129 (211)
                      ++||||......    .+..++.     ...-.++|+|++...  ..+......+..    --+--++++|.|-...   
T Consensus       304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f~~----~~~~glIlTKLDEt~~---  374 (432)
T PRK12724        304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAYES----LNYRRILLTKLDEADF---  374 (432)
T ss_pred             EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHhcC----CCCCEEEEEcccCCCC---
Confidence            999999653221    1222222     233578899987653  222232222211    2234778999996431   


Q ss_pred             CHHHHHHHHHHcCCcEEEEeC
Q 028251          130 SKEEGEQFAKENGLLFLEASA  150 (211)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~s~  150 (211)
                       .-.+-......+.|+..++.
T Consensus       375 -~G~il~i~~~~~lPI~ylt~  394 (432)
T PRK12724        375 -LGSFLELADTYSKSFTYLSV  394 (432)
T ss_pred             -ccHHHHHHHHHCCCEEEEec
Confidence             23345556667888766653

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=97.47  E-value=0.0022  Score=45.23  Aligned_cols=23  Identities=30%  Similarity=0.485  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|++|+|||||++.+.+..
T Consensus        28 ~~~i~G~nGsGKStLl~~l~G~~   50 (144)
T cd03221          28 RIGLVGRNGAGKSTLLKLIAGEL   50 (144)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            47899999999999999998664

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.46  E-value=0.00068  Score=51.07  Aligned_cols=61  Identities=28%  Similarity=0.284  Sum_probs=37.3

Q ss_pred             EEEEeC-CCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC-CeEEEEEecCCCC
Q 028251           57 LQIWDT-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPN-MSIMLVGNKCDLA  124 (211)
Q Consensus        57 l~l~D~-~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~p~ivv~nK~Dl~  124 (211)
                      +.+.|| +|.+.+.+   .....+|.+|+|+|.+-. ++.............   + .++.+|+||.|-.
T Consensus       136 ~VivDtEAGiEHfgR---g~~~~vD~vivVvDpS~~-sl~taeri~~L~~el---g~k~i~~V~NKv~e~  198 (255)
T COG3640         136 VVIVDTEAGIEHFGR---GTIEGVDLVIVVVDPSYK-SLRTAERIKELAEEL---GIKRIFVVLNKVDEE  198 (255)
T ss_pred             EEEEecccchhhhcc---ccccCCCEEEEEeCCcHH-HHHHHHHHHHHHHHh---CCceEEEEEeeccch
Confidence            455665 34444433   345679999999998654 333333322222222   4 8999999999953

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.44  E-value=0.0014  Score=45.47  Aligned_cols=26  Identities=23%  Similarity=0.433  Sum_probs=22.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCC
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRF   31 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~   31 (211)
                      ...+++.|++|+|||+|++.+...-.
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~~~   44 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANELF   44 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhh
Confidence            34689999999999999999986643

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK10867 signal recognition particle protein; Provisional

Probab=97.43  E-value=0.0016  Score=54.16  Aligned_cols=87  Identities=15%  Similarity=0.023  Sum_probs=46.9

Q ss_pred             EEEEEEEeCCCccchhh----chHHH--hccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCC
Q 028251           54 PIKLQIWDTAGQESFRS----ITRSY--YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR  127 (211)
Q Consensus        54 ~~~l~l~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  127 (211)
                      .+.+.|+||||......    ....+  .-..+.+++|+|+....   +.......+....   ...-+++||.|.....
T Consensus       183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~~---~i~giIlTKlD~~~rg  256 (433)
T PRK10867        183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEAL---GLTGVILTKLDGDARG  256 (433)
T ss_pred             CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhhC---CCCEEEEeCccCcccc
Confidence            35688999999543221    11111  12467789999986532   2222223333211   1246778999963321


Q ss_pred             CCCHHHHHHHHHHcCCcEEEEeC
Q 028251          128 AVSKEEGEQFAKENGLLFLEASA  150 (211)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~s~  150 (211)
                          -.+.......+.|+.++..
T Consensus       257 ----G~alsi~~~~~~PI~fig~  275 (433)
T PRK10867        257 ----GAALSIRAVTGKPIKFIGT  275 (433)
T ss_pred             ----cHHHHHHHHHCcCEEEEeC
Confidence                2244555567788666543

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.40  E-value=0.006  Score=50.13  Aligned_cols=139  Identities=15%  Similarity=0.087  Sum_probs=73.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCC----CCC-------CC--------------CeeeEEEEEEEE-------ECCE
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQ----PVH-------DL--------------TIGVEFGARMVT-------IDGR   53 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~----~~~-------~~--------------~~~~~~~~~~~~-------~~~~   53 (211)
                      .-.|+++|++|+||||.+..|...-..    ...       ..              ..+..+......       -...
T Consensus       174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~  253 (388)
T PRK12723        174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK  253 (388)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence            457899999999999999887532100    000       00              001111111000       0113


Q ss_pred             EEEEEEEeCCCccchhh----chHHHhccc--c-EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCC
Q 028251           54 PIKLQIWDTAGQESFRS----ITRSYYRGA--A-GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR  126 (211)
Q Consensus        54 ~~~l~l~D~~G~~~~~~----~~~~~~~~~--d-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  126 (211)
                      ...+.++||+|......    ....++...  + -.++|+|++...  ..+...+..+..    -.+--++++|.|-.. 
T Consensus       254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~~~~~~~~----~~~~~~I~TKlDet~-  326 (388)
T PRK12723        254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKEIFHQFSP----FSYKTVIFTKLDETT-  326 (388)
T ss_pred             CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHHHHHHhcC----CCCCEEEEEeccCCC-
Confidence            45688999999654221    122233222  2 578899987752  223333333221    124578899999643 


Q ss_pred             CCCCHHHHHHHHHHcCCcEEEEeCCCCCCH
Q 028251          127 RAVSKEEGEQFAKENGLLFLEASARTAQNV  156 (211)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  156 (211)
                         ..-.+-.++...+.|+..++  +|.++
T Consensus       327 ---~~G~~l~~~~~~~~Pi~yit--~Gq~v  351 (388)
T PRK12723        327 ---CVGNLISLIYEMRKEVSYVT--DGQIV  351 (388)
T ss_pred             ---cchHHHHHHHHHCCCEEEEe--CCCCC
Confidence               22334556666788876664  55666

>TIGR00959 ffh signal recognition particle protein

Probab=97.39  E-value=0.0043  Score=51.59  Aligned_cols=87  Identities=16%  Similarity=0.027  Sum_probs=48.6

Q ss_pred             EEEEEEEeCCCccchhhc----hHHH--hccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCC
Q 028251           54 PIKLQIWDTAGQESFRSI----TRSY--YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR  127 (211)
Q Consensus        54 ~~~l~l~D~~G~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  127 (211)
                      .+.+.|+||||.......    ...+  .-..|.+++|+|+....   ........+....   ...-++.||.|.....
T Consensus       182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v---~i~giIlTKlD~~~~~  255 (428)
T TIGR00959       182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL---GLTGVVLTKLDGDARG  255 (428)
T ss_pred             CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC---CCCEEEEeCccCcccc
Confidence            356889999995432221    1111  23467889999987542   2222333333221   2346779999963311


Q ss_pred             CCCHHHHHHHHHHcCCcEEEEeC
Q 028251          128 AVSKEEGEQFAKENGLLFLEASA  150 (211)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~s~  150 (211)
                          -.+.......+.|+.++..
T Consensus       256 ----G~~lsi~~~~~~PI~fi~~  274 (428)
T TIGR00959       256 ----GAALSVRSVTGKPIKFIGV  274 (428)
T ss_pred             ----cHHHHHHHHHCcCEEEEeC
Confidence                2255566667888766553

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=97.39  E-value=0.0032  Score=50.93  Aligned_cols=22  Identities=27%  Similarity=0.446  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      -.+|.|.-|+|||||+|+++..
T Consensus         6 v~iltGFLGaGKTTll~~ll~~   27 (341)
T TIGR02475         6 VTIVTGFLGAGKTTLIRHLLQN   27 (341)
T ss_pred             EEEEEECCCCCHHHHHHHHHhc
Confidence            4678899999999999999854

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=97.36  E-value=0.00017  Score=58.19  Aligned_cols=155  Identities=21%  Similarity=0.124  Sum_probs=93.7

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCC-------------------CCCCC----------CCeeeEEEEEEEEECCEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRF-------------------QPVHD----------LTIGVEFGARMVTIDGRPI   55 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~-------------------~~~~~----------~~~~~~~~~~~~~~~~~~~   55 (211)
                      ..++++++|...+||||+-..++....                   ...|.          ..-|.+.......++-...
T Consensus        78 ~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~~  157 (501)
T KOG0459|consen   78 EHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETENK  157 (501)
T ss_pred             CCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecce
Confidence            468999999999999998666532110                   00000          0113333333444455556


Q ss_pred             EEEEEeCCCccchhhchHHHhccccEEEEEEECCCHH---HHHHHHHHHH--HHHHhcCCCCeEEEEEecCCCCCCCCCC
Q 028251           56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE---TFNHLSSWLE--DARQHANPNMSIMLVGNKCDLAHRRAVS  130 (211)
Q Consensus        56 ~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~~~~~~~~~--~~~~~~~~~~p~ivv~nK~Dl~~~~~~~  130 (211)
                      ++.+.|+||+..|-.....-..++|..++|+++.-.+   .|+.=.+.+.  .+.... .....++++||+|-+.- .++
T Consensus       158 ~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~-gv~~lVv~vNKMddPtv-nWs  235 (501)
T KOG0459|consen  158 RFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA-GVKHLIVLINKMDDPTV-NWS  235 (501)
T ss_pred             eEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhh-ccceEEEEEEeccCCcc-Ccc
Confidence            7889999999998887777788999999999985422   1221111111  111111 25678999999997531 222


Q ss_pred             H---HH----HHHHHHHcC------CcEEEEeCCCCCCHHHHHH
Q 028251          131 K---EE----GEQFAKENG------LLFLEASARTAQNVEEAFI  161 (211)
Q Consensus       131 ~---~~----~~~~~~~~~------~~~~~~s~~~~~~i~~~~~  161 (211)
                      .   ++    ...+....+      ..++++|..+|.++.+-.+
T Consensus       236 ~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  236 NERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             hhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence            2   22    222333322      3489999999999988664

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.34  E-value=0.00024  Score=42.20  Aligned_cols=21  Identities=38%  Similarity=0.491  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHHh
Q 028251            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ..+|.|+.|+|||||+.++.-
T Consensus        25 ~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999998864

>TIGR00235 udk uridine kinase

Probab=97.31  E-value=0.0003  Score=52.75  Aligned_cols=29  Identities=21%  Similarity=0.192  Sum_probs=26.2

Q ss_pred             CCCCceeeEEEEcCCCCCHHHHHHHHHhC
Q 028251            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      |..+...-|+|+|++|+|||||++.|.+.
T Consensus         1 ~~~~~g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         1 MDKPKGIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             CCCCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence            77788889999999999999999999864

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.29  E-value=0.00025  Score=48.23  Aligned_cols=22  Identities=36%  Similarity=0.566  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .|+|.|++||||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999854

...

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.29  E-value=0.002  Score=52.50  Aligned_cols=92  Identities=15%  Similarity=0.103  Sum_probs=49.3

Q ss_pred             EEEEEEeCCCccchhh----chHHHhc--cccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCC
Q 028251           55 IKLQIWDTAGQESFRS----ITRSYYR--GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA  128 (211)
Q Consensus        55 ~~l~l~D~~G~~~~~~----~~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  128 (211)
                      ..+.|+||||......    ....+..  ..+.+++|.++...  ...+......+   . .-.+--++++|.|-..   
T Consensus       286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~--~~d~~~i~~~f---~-~l~i~glI~TKLDET~---  356 (407)
T PRK12726        286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK--SADVMTILPKL---A-EIPIDGFIITKMDETT---  356 (407)
T ss_pred             CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc--HHHHHHHHHhc---C-cCCCCEEEEEcccCCC---
Confidence            5788999999743332    1222222  34566777776332  22222222222   1 1224477799999643   


Q ss_pred             CCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Q 028251          129 VSKEEGEQFAKENGLLFLEASARTAQNVEE  158 (211)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  158 (211)
                       ..-.+-..+...+.|+..++  +|.++.+
T Consensus       357 -~~G~~Lsv~~~tglPIsylt--~GQ~Vpd  383 (407)
T PRK12726        357 -RIGDLYTVMQETNLPVLYMT--DGQNITE  383 (407)
T ss_pred             -CccHHHHHHHHHCCCEEEEe--cCCCCCc
Confidence             22345556667788877765  3444443

>PRK08118 topology modulation protein; Reviewed

Probab=97.27  E-value=0.00026  Score=51.24  Aligned_cols=23  Identities=48%  Similarity=0.626  Sum_probs=20.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .+|+|+|++|||||||.+.|...
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999999854

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.25  E-value=0.0024  Score=42.54  Aligned_cols=100  Identities=15%  Similarity=0.038  Sum_probs=57.2

Q ss_pred             EcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCH
Q 028251           12 IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR   91 (211)
Q Consensus        12 vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~   91 (211)
                      =+..|+||||+...|...-........     ........... .+.+.|+|+....  .....+..+|.+|++++.+. 
T Consensus         6 ~~kgg~gkt~~~~~la~~~~~~~~~~~-----~l~d~d~~~~~-D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~-   76 (106)
T cd03111           6 GAKGGVGATTLAANLAVALAKEAGRRV-----LLVDLDLQFGD-DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDL-   76 (106)
T ss_pred             CCCCCCcHHHHHHHHHHHHHhcCCCcE-----EEEECCCCCCC-CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCCh-
Confidence            356789999977666422111101111     01101111111 6789999986533  33456788999999988754 


Q ss_pred             HHHHHHHHHHHHHHHhcCC-CCeEEEEEec
Q 028251           92 ETFNHLSSWLEDARQHANP-NMSIMLVGNK  120 (211)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK  120 (211)
                      .+...+..+++.+.+.... ...+.+++|+
T Consensus        77 ~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          77 PSIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             HHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence            3556666666666655433 4567777774

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.22  E-value=0.00031  Score=51.39  Aligned_cols=23  Identities=35%  Similarity=0.665  Sum_probs=21.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .+|+|+|++||||||+.++|...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999866

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.21  E-value=0.0019  Score=44.77  Aligned_cols=23  Identities=26%  Similarity=0.432  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      -|++.|+.|+|||||++.+...-
T Consensus        24 ~i~l~G~lGaGKTtl~~~l~~~l   46 (133)
T TIGR00150        24 VVLLKGDLGAGKTTLVQGLLQGL   46 (133)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            58899999999999999998653

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.21  E-value=0.00029  Score=53.51  Aligned_cols=23  Identities=35%  Similarity=0.455  Sum_probs=20.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCC
Q 028251            9 YIIIGDTGVGKSCLLLQFTDKRF   31 (211)
Q Consensus         9 i~vvG~~~~GKSsli~~l~~~~~   31 (211)
                      |+++|++|||||||+|.+.+-..
T Consensus        32 vsilGpSGcGKSTLLriiAGL~~   54 (248)
T COG1116          32 VAILGPSGCGKSTLLRLIAGLEK   54 (248)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCC
Confidence            78999999999999999986543

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=97.19  E-value=0.0045  Score=45.15  Aligned_cols=85  Identities=28%  Similarity=0.300  Sum_probs=59.0

Q ss_pred             EEEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHH
Q 028251           53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE  132 (211)
Q Consensus        53 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~  132 (211)
                      ..+.+.++|+|+....  .....+..+|.+++++..... +...+..+++.+...   +.|+.+++|+.|....   ..+
T Consensus        91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~~-~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~~---~~~  161 (179)
T cd03110          91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTPS-GLHDLERAVELVRHF---GIPVGVVINKYDLNDE---IAE  161 (179)
T ss_pred             cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCcc-cHHHHHHHHHHHHHc---CCCEEEEEeCCCCCcc---hHH
Confidence            4567899999976432  344567889999999988743 445556666555543   5678999999997432   245


Q ss_pred             HHHHHHHHcCCcEE
Q 028251          133 EGEQFAKENGLLFL  146 (211)
Q Consensus       133 ~~~~~~~~~~~~~~  146 (211)
                      +..++.+..+++++
T Consensus       162 ~~~~~~~~~~~~vl  175 (179)
T cd03110         162 EIEDYCEEEGIPIL  175 (179)
T ss_pred             HHHHHHHHcCCCeE
Confidence            66777777787765

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>PRK07261 topology modulation protein; Provisional

Probab=97.19  E-value=0.00036  Score=50.76  Aligned_cols=23  Identities=39%  Similarity=0.592  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .+|+|+|++|+|||||.+.|...
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            37999999999999999998743

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.17  E-value=0.00036  Score=48.87  Aligned_cols=21  Identities=33%  Similarity=0.574  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 028251            9 YIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         9 i~vvG~~~~GKSsli~~l~~~   29 (211)
                      |+++|++|||||||++.|...
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~   22 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKR   22 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999844

...

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.16  E-value=0.0005  Score=49.91  Aligned_cols=29  Identities=24%  Similarity=0.279  Sum_probs=25.3

Q ss_pred             CCCCceeeEEEEcCCCCCHHHHHHHHHhC
Q 028251            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      |+.....-+.|+|++|+|||||++++...
T Consensus         1 ~~~~~~~ii~ivG~sgsGKTTLi~~li~~   29 (173)
T PRK10751          1 MNKTMIPLLAIAAWSGTGKTTLLKKLIPA   29 (173)
T ss_pred             CCCCCceEEEEECCCCChHHHHHHHHHHH
Confidence            66667778999999999999999999855

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.16  E-value=0.00038  Score=48.40  Aligned_cols=23  Identities=35%  Similarity=0.446  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|++|+|||||++.+.+..
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEEccCCCccccceeeecccc
Confidence            58999999999999999988664

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=97.14  E-value=0.00057  Score=51.42  Aligned_cols=68  Identities=16%  Similarity=0.108  Sum_probs=37.5

Q ss_pred             EEEEEEeCCCccchhh------chHHHhccccEEEEEEECC------CHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCC
Q 028251           55 IKLQIWDTAGQESFRS------ITRSYYRGAAGALLVYDIT------RRETFNHLSSWLEDARQHANPNMSIMLVGNKCD  122 (211)
Q Consensus        55 ~~l~l~D~~G~~~~~~------~~~~~~~~~d~~i~v~d~~------~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  122 (211)
                      -...++|+|||-++..      .....+...|.-+.++.+.      +|..|..  ..+..+.....-..|-+=|+.|+|
T Consensus        97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS--~lL~sl~tMl~melphVNvlSK~D  174 (290)
T KOG1533|consen   97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFIS--SLLVSLATMLHMELPHVNVLSKAD  174 (290)
T ss_pred             CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHH--HHHHHHHHHHhhcccchhhhhHhH
Confidence            3467999999754332      1223344566555555443      4544332  222222222223678888899999


Q ss_pred             CC
Q 028251          123 LA  124 (211)
Q Consensus       123 l~  124 (211)
                      +.
T Consensus       175 l~  176 (290)
T KOG1533|consen  175 LL  176 (290)
T ss_pred             HH
Confidence            73

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=97.14  E-value=0.00074  Score=52.86  Aligned_cols=61  Identities=23%  Similarity=0.372  Sum_probs=38.4

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCC----CCCCCCeeeEEEEEE-EEECCEEEEEEEEeCCCc
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQ----PVHDLTIGVEFGARM-VTIDGRPIKLQIWDTAGQ   65 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~l~l~D~~G~   65 (211)
                      +..+.+.|+|-||+|||||+|.+.....-    ....+-.|++..+.. +.+.... .+.+.||||.
T Consensus       141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGi  206 (335)
T KOG2485|consen  141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGI  206 (335)
T ss_pred             CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCc
Confidence            34678999999999999999998643221    111122244444443 3343333 3678999994

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.11  E-value=0.0076  Score=47.06  Aligned_cols=139  Identities=18%  Similarity=0.112  Sum_probs=73.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCC---------C--C----------CCCCeeeEEEEEEEE----------E-CCEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQ---------P--V----------HDLTIGVEFGARMVT----------I-DGRP   54 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~---------~--~----------~~~~~~~~~~~~~~~----------~-~~~~   54 (211)
                      -+++++|++|+||||++..+...-..         .  .          +....+..+... ..          + ....
T Consensus        76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~-~~~~~l~~~l~~l~~~~~  154 (270)
T PRK06731         76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV-RDEAAMTRALTYFKEEAR  154 (270)
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEec-CCHHHHHHHHHHHHhcCC
Confidence            58999999999999999887533110         0  0          000011111110 00          0 0124


Q ss_pred             EEEEEEeCCCccchhh----chHHHh--ccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCC
Q 028251           55 IKLQIWDTAGQESFRS----ITRSYY--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA  128 (211)
Q Consensus        55 ~~l~l~D~~G~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  128 (211)
                      +.+.|+||||......    ....++  ...+-+++|+|++...  ..+..+...+..    -.+--++++|.|-...  
T Consensus       155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~f~~----~~~~~~I~TKlDet~~--  226 (270)
T PRK06731        155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD----IHIDGIVFTKFDETAS--  226 (270)
T ss_pred             CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHHhCC----CCCCEEEEEeecCCCC--
Confidence            5788999999653222    122222  2345688999986431  222233333322    2345778999996442  


Q ss_pred             CCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Q 028251          129 VSKEEGEQFAKENGLLFLEASARTAQNVEE  158 (211)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  158 (211)
                        .-.+-..+...+.|+..++  +|.++.+
T Consensus       227 --~G~~l~~~~~~~~Pi~~it--~Gq~vp~  252 (270)
T PRK06731        227 --SGELLKIPAVSSAPIVLMT--DGQDVKK  252 (270)
T ss_pred             --ccHHHHHHHHHCcCEEEEe--CCCCCCc
Confidence              2234455666788877665  4444443

>PRK10646 ADP-binding protein; Provisional

Probab=97.09  E-value=0.0045  Score=43.94  Aligned_cols=23  Identities=26%  Similarity=0.395  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      -|++-|+-|+|||||++.+...-
T Consensus        30 vi~L~GdLGaGKTtf~rgl~~~L   52 (153)
T PRK10646         30 VIYLYGDLGAGKTTFSRGFLQAL   52 (153)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            48899999999999999997543

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.07  E-value=0.00047  Score=52.03  Aligned_cols=23  Identities=35%  Similarity=0.413  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      -++|+||+|||||||+|.+-+-.
T Consensus        33 ~vaI~GpSGSGKSTLLniig~ld   55 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGGLD   55 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            37899999999999999887554

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.07  E-value=0.00068  Score=50.54  Aligned_cols=23  Identities=39%  Similarity=0.538  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .++++||+|||||||++.+-+-.
T Consensus        30 vv~iiGpSGSGKSTlLRclN~LE   52 (240)
T COG1126          30 VVVIIGPSGSGKSTLLRCLNGLE   52 (240)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCc
Confidence            58999999999999999988554

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.06  E-value=0.0007  Score=41.36  Aligned_cols=21  Identities=29%  Similarity=0.540  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 028251            9 YIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         9 i~vvG~~~~GKSsli~~l~~~   29 (211)
                      |++.|++|+||||+.+.|...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998855

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>COG0802 Predicted ATPase or kinase [General function prediction only]

Probab=97.03  E-value=0.0037  Score=43.92  Aligned_cols=24  Identities=25%  Similarity=0.344  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRF   31 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~   31 (211)
                      -|++-|+-|+|||||.+.+...-.
T Consensus        27 Vv~L~GdLGAGKTtf~rgi~~~Lg   50 (149)
T COG0802          27 VVLLSGDLGAGKTTLVRGIAKGLG   50 (149)
T ss_pred             EEEEEcCCcCChHHHHHHHHHHcC
Confidence            478899999999999999975443

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=97.02  E-value=0.00057  Score=52.65  Aligned_cols=22  Identities=36%  Similarity=0.394  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      -++++||+|||||||++.+.+-
T Consensus        30 i~~iiGpNG~GKSTLLk~l~g~   51 (258)
T COG1120          30 ITGILGPNGSGKSTLLKCLAGL   51 (258)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            3689999999999999999853

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.01  E-value=0.00042  Score=49.86  Aligned_cols=22  Identities=23%  Similarity=0.536  Sum_probs=17.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      ||+|.|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999999865

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=97.00  E-value=0.0062  Score=49.14  Aligned_cols=117  Identities=15%  Similarity=0.138  Sum_probs=63.3

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCC------------------CCCCCCCeeeEEEEEE-----EE------------
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRF------------------QPVHDLTIGVEFGARM-----VT------------   49 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~------------------~~~~~~~~~~~~~~~~-----~~------------   49 (211)
                      ..++|+|+|...+|||||+-.|.....                  ......++|.++.--.     ++            
T Consensus       132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv  211 (641)
T KOG0463|consen  132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV  211 (641)
T ss_pred             eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence            357999999999999999866543222                  1222223333221110     00            


Q ss_pred             --ECCEEEEEEEEeCCCccchhhchHH--HhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCC
Q 028251           50 --IDGRPIKLQIWDTAGQESFRSITRS--YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH  125 (211)
Q Consensus        50 --~~~~~~~l~l~D~~G~~~~~~~~~~--~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  125 (211)
                        .++..-.+.|+|.+|++.|......  .-+-.|...+++-++...-  .+......+.-  .-.+|+++|++|+|+-.
T Consensus       212 kIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIi--GmTKEHLgLAL--aL~VPVfvVVTKIDMCP  287 (641)
T KOG0463|consen  212 KICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGII--GMTKEHLGLAL--ALHVPVFVVVTKIDMCP  287 (641)
T ss_pred             eeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccce--eccHHhhhhhh--hhcCcEEEEEEeeccCc
Confidence              0111224679999999987763321  1244677777776654311  00011111111  12789999999999743

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.98  E-value=0.00071  Score=50.39  Aligned_cols=24  Identities=33%  Similarity=0.344  Sum_probs=19.9

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHH
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFT   27 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~   27 (211)
                      ...--.+++||+|||||||++.|-
T Consensus        31 ~~~~VTAlIGPSGcGKST~LR~lN   54 (253)
T COG1117          31 PKNKVTALIGPSGCGKSTLLRCLN   54 (253)
T ss_pred             cCCceEEEECCCCcCHHHHHHHHH
Confidence            344457899999999999998876

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=96.96  E-value=0.00069  Score=51.98  Aligned_cols=22  Identities=36%  Similarity=0.456  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      -++|+||+|+|||||++.+++-
T Consensus        32 ~~~iiGPNGaGKSTLlK~iLGl   53 (254)
T COG1121          32 ITALIGPNGAGKSTLLKAILGL   53 (254)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999973

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=96.96  E-value=0.00081  Score=49.11  Aligned_cols=21  Identities=29%  Similarity=0.363  Sum_probs=19.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHH
Q 028251            7 FKYIIIGDTGVGKSCLLLQFT   27 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~   27 (211)
                      -.++|+|++|+|||||++.++
T Consensus        22 ~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          22 VLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            368999999999999999886

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=96.95  E-value=0.017  Score=41.20  Aligned_cols=23  Identities=30%  Similarity=0.413  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|++|+|||||++.+.+.-
T Consensus        27 ~~~i~G~nGsGKStll~~l~g~~   49 (157)
T cd00267          27 IVALVGPNGSGKSTLLRAIAGLL   49 (157)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998653

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.94  E-value=0.0012  Score=49.63  Aligned_cols=22  Identities=32%  Similarity=0.456  Sum_probs=20.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q 028251            9 YIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         9 i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      -+++||.|+|||||.+.+.++.
T Consensus        33 haiMGPNGsGKSTLa~~i~G~p   54 (251)
T COG0396          33 HAIMGPNGSGKSTLAYTIMGHP   54 (251)
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            4789999999999999999875

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=96.93  E-value=0.018  Score=45.39  Aligned_cols=21  Identities=33%  Similarity=0.401  Sum_probs=19.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHH
Q 028251            7 FKYIIIGDTGVGKSCLLLQFT   27 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~   27 (211)
                      -.|+|.|.+||||||+++.|-
T Consensus         7 ~~i~i~G~~GsGKtt~~~~l~   27 (288)
T PRK05416          7 RLVIVTGLSGAGKSVALRALE   27 (288)
T ss_pred             eEEEEECCCCCcHHHHHHHHH
Confidence            468999999999999999995

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=96.92  E-value=0.00088  Score=46.84  Aligned_cols=21  Identities=38%  Similarity=0.703  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 028251            9 YIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         9 i~vvG~~~~GKSsli~~l~~~   29 (211)
                      |+|+|++|+|||||++.|...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999854

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=96.92  E-value=0.00098  Score=45.81  Aligned_cols=27  Identities=26%  Similarity=0.370  Sum_probs=22.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQP   33 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~   33 (211)
                      -.++++|++|+|||++++.+...-...
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~   29 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGPP   29 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCCC
Confidence            468999999999999999998665433

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=96.91  E-value=0.00092  Score=49.26  Aligned_cols=22  Identities=27%  Similarity=0.548  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .++|+|++|+|||||++.|...
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5899999999999999999754

>PRK01889 GTPase RsgA; Reviewed

Probab=96.90  E-value=0.0011  Score=54.00  Aligned_cols=25  Identities=28%  Similarity=0.477  Sum_probs=21.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRF   31 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~   31 (211)
                      -+++++|.+|+|||||+|.|.+...
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~~~  220 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGEEV  220 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHhcc
Confidence            3689999999999999999997543

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=96.89  E-value=0.00082  Score=53.83  Aligned_cols=23  Identities=30%  Similarity=0.494  Sum_probs=20.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCC
Q 028251            9 YIIIGDTGVGKSCLLLQFTDKRF   31 (211)
Q Consensus         9 i~vvG~~~~GKSsli~~l~~~~~   31 (211)
                      ++++||+|||||||++.+.+-.-
T Consensus        32 ~vllGPSGcGKSTlLr~IAGLe~   54 (338)
T COG3839          32 VVLLGPSGCGKSTLLRMIAGLEE   54 (338)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCC
Confidence            78999999999999999986543

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=96.88  E-value=0.00097  Score=44.36  Aligned_cols=20  Identities=40%  Similarity=0.745  Sum_probs=18.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHH
Q 028251            8 KYIIIGDTGVGKSCLLLQFT   27 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~   27 (211)
                      .++++|++|+|||||++.+.
T Consensus        17 ~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          17 GVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEcCCCCCHHHHHHHhh
Confidence            58999999999999999876

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=96.87  E-value=0.001  Score=45.60  Aligned_cols=22  Identities=23%  Similarity=0.391  Sum_probs=19.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q 028251            9 YIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         9 i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      |++.|++|+|||++++.+...-
T Consensus         1 ill~G~~G~GKT~l~~~la~~l   22 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYL   22 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHT
T ss_pred             CEEECcCCCCeeHHHHHHHhhc
Confidence            6899999999999999998653

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PTZ00088 adenylate kinase 1; Provisional

Probab=96.86  E-value=0.0012  Score=50.28  Aligned_cols=28  Identities=25%  Similarity=0.432  Sum_probs=23.9

Q ss_pred             CCCCceeeEEEEcCCCCCHHHHHHHHHh
Q 028251            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      |.-...++|+|+|++||||||+.+.|..
T Consensus         1 ~~~~~~mrIvl~G~PGsGK~T~a~~La~   28 (229)
T PTZ00088          1 MKLKGPLKIVLFGAPGVGKGTFAEILSK   28 (229)
T ss_pred             CCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence            5555678999999999999999999854

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=96.86  E-value=0.001  Score=50.20  Aligned_cols=23  Identities=35%  Similarity=0.408  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|++|+|||||++.+.+..
T Consensus        32 ~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          32 FVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             EEEEEcCCCCCHHHHHHHHhCCc
Confidence            57999999999999999998653

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=96.85  E-value=0.0018  Score=44.22  Aligned_cols=24  Identities=21%  Similarity=0.344  Sum_probs=20.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      --|++-|+-|+|||||++.+...-
T Consensus        16 ~vi~L~GdLGaGKTtf~r~l~~~l   39 (123)
T PF02367_consen   16 DVILLSGDLGAGKTTFVRGLARAL   39 (123)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHc
Confidence            358999999999999999997543

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=96.84  E-value=0.0011  Score=48.51  Aligned_cols=22  Identities=27%  Similarity=0.437  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .++|+|++|||||||++.|...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998765

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.83  E-value=0.015  Score=42.48  Aligned_cols=23  Identities=35%  Similarity=0.381  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      -|.|+|.+|+|||||++.+-.-.
T Consensus        34 VisIIGsSGSGKSTfLRCiN~LE   56 (256)
T COG4598          34 VISIIGSSGSGKSTFLRCINFLE   56 (256)
T ss_pred             EEEEecCCCCchhHHHHHHHhhc
Confidence            37899999999999999886443

>PRK05480 uridine/cytidine kinase; Provisional

Probab=96.83  E-value=0.0016  Score=48.93  Aligned_cols=26  Identities=19%  Similarity=0.247  Sum_probs=23.3

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhC
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .....|+|.|++|||||||.+.|...
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            46789999999999999999999864

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.82  E-value=0.0011  Score=49.68  Aligned_cols=23  Identities=35%  Similarity=0.457  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|++|+|||||++.+.+..
T Consensus        29 ~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          29 FVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998653

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.82  E-value=0.0016  Score=52.58  Aligned_cols=42  Identities=17%  Similarity=0.180  Sum_probs=26.9

Q ss_pred             CEEEEEEEEeCCCccchhhc----hH--HHhccccEEEEEEECCCHHH
Q 028251           52 GRPIKLQIWDTAGQESFRSI----TR--SYYRGAAGALLVYDITRRET   93 (211)
Q Consensus        52 ~~~~~l~l~D~~G~~~~~~~----~~--~~~~~~d~~i~v~d~~~~~~   93 (211)
                      ..++.+.|+||.|.......    ..  .-.-..|-+|+|+|++-...
T Consensus       181 ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQa  228 (483)
T KOG0780|consen  181 KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQA  228 (483)
T ss_pred             hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHh
Confidence            35678999999995432221    11  11235789999999987544

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=96.82  E-value=0.0012  Score=48.60  Aligned_cols=23  Identities=35%  Similarity=0.426  Sum_probs=20.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      -.++++|++|+|||||++.|++.
T Consensus        26 ~~i~I~G~tGSGKTTll~aL~~~   48 (186)
T cd01130          26 KNILISGGTGSGKTTLLNALLAF   48 (186)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            46899999999999999999864

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=96.81  E-value=0.0012  Score=49.85  Aligned_cols=23  Identities=26%  Similarity=0.457  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|++|+|||||++.+.+..
T Consensus        31 ~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        31 MVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57999999999999999999753

>PRK06217 hypothetical protein; Validated

Probab=96.81  E-value=0.0012  Score=48.46  Aligned_cols=23  Identities=22%  Similarity=0.466  Sum_probs=20.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .+|+|+|.+|||||||.++|...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999854

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=96.81  E-value=0.009  Score=50.97  Aligned_cols=22  Identities=18%  Similarity=0.439  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      -+++.||+||||||.++.|...
T Consensus        47 iLlLtGP~G~GKtttv~~La~e   68 (519)
T PF03215_consen   47 ILLLTGPSGCGKTTTVKVLAKE   68 (519)
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3577999999999999998754

>PRK04195 replication factor C large subunit; Provisional

Probab=96.81  E-value=0.019  Score=48.81  Aligned_cols=25  Identities=24%  Similarity=0.410  Sum_probs=21.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCC
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .-.++|.|++|+|||++++.|...-
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~el   63 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALANDY   63 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHc
Confidence            3568999999999999999998653

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.81  E-value=0.0012  Score=49.38  Aligned_cols=23  Identities=22%  Similarity=0.302  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|++|+|||||++.+.+..
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          28 IIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998753

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=96.80  E-value=0.0024  Score=53.29  Aligned_cols=81  Identities=16%  Similarity=0.197  Sum_probs=52.7

Q ss_pred             chhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEE
Q 028251           67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFL  146 (211)
Q Consensus        67 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  146 (211)
                      .++.+|. .+..+|++|.++|+.+|--|.. ..+...+... .+.+..++++||+||....+  ......+...++++++
T Consensus       164 ~WRQLWR-VlErSDivvqIVDARnPllfr~-~dLe~Yvke~-d~~K~~~LLvNKaDLl~~~q--r~aWa~YF~~~ni~~v  238 (562)
T KOG1424|consen  164 IWRQLWR-VLERSDIVVQIVDARNPLLFRS-PDLEDYVKEV-DPSKANVLLVNKADLLPPEQ--RVAWAEYFRQNNIPVV  238 (562)
T ss_pred             HHHHHHH-HHhhcceEEEEeecCCccccCC-hhHHHHHhcc-ccccceEEEEehhhcCCHHH--HHHHHHHHHhcCceEE
Confidence            3444443 5678999999999999854322 1222222222 23567899999999965332  2345556677889999


Q ss_pred             EEeCCC
Q 028251          147 EASART  152 (211)
Q Consensus       147 ~~s~~~  152 (211)
                      +.||..
T Consensus       239 f~SA~~  244 (562)
T KOG1424|consen  239 FFSALA  244 (562)
T ss_pred             EEeccc
Confidence            999886

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=96.80  E-value=0.055  Score=39.14  Aligned_cols=84  Identities=12%  Similarity=-0.025  Sum_probs=50.9

Q ss_pred             EEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHH
Q 028251           56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGE  135 (211)
Q Consensus        56 ~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~  135 (211)
                      .+.++|+|+....  .....+..+|.+|++++.... +...+..+++.+....  .....+++|+.+.....  ..+..+
T Consensus        64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~~~~~~--~~~~~iv~N~~~~~~~~--~~~~~~  136 (179)
T cd02036          64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEIS-SLRDADRVKGLLEALG--IKVVGVIVNRVRPDMVE--GGDMVE  136 (179)
T ss_pred             CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcc-hHHHHHHHHHHHHHcC--CceEEEEEeCCcccccc--hhhHHH
Confidence            6889999986433  344567789999999987653 3444555555554422  34577889999864321  112233


Q ss_pred             HHHHHcCCcEE
Q 028251          136 QFAKENGLLFL  146 (211)
Q Consensus       136 ~~~~~~~~~~~  146 (211)
                      .+.+..+.+++
T Consensus       137 ~~~~~~~~~v~  147 (179)
T cd02036         137 DIEEILGVPLL  147 (179)
T ss_pred             HHHHHhCCCEE
Confidence            44444566654

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=96.80  E-value=0.0011  Score=48.87  Aligned_cols=23  Identities=35%  Similarity=0.574  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|++|+|||||++.+.+..
T Consensus        20 ~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        20 VLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57999999999999999998653

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=96.80  E-value=0.0013  Score=47.90  Aligned_cols=22  Identities=36%  Similarity=0.459  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .++|+|++|+|||||+|-+.+=
T Consensus        27 ~vAi~GpSGaGKSTLLnLIAGF   48 (231)
T COG3840          27 IVAILGPSGAGKSTLLNLIAGF   48 (231)
T ss_pred             EEEEECCCCccHHHHHHHHHhc
Confidence            6899999999999999998743

>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]

Probab=96.79  E-value=0.00065  Score=59.27  Aligned_cols=120  Identities=18%  Similarity=0.129  Sum_probs=72.7

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEE--------------------------------------
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGA--------------------------------------   45 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--------------------------------------   45 (211)
                      -..+.|+|+|..++||||.++.+.+..+.+....-++....+                                      
T Consensus        27 i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~e  106 (657)
T KOG0446|consen   27 IPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEIRSE  106 (657)
T ss_pred             ccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecccccCCcccchhccccccccccCCHHHHHHHHHhh
Confidence            466899999999999999999999876654322211100000                                      


Q ss_pred             ---------------EEEEECC-EEEEEEEEeCCCcc-------------chhhchHHHhccccEEEEEEECCCHHHHHH
Q 028251           46 ---------------RMVTIDG-RPIKLQIWDTAGQE-------------SFRSITRSYYRGAAGALLVYDITRRETFNH   96 (211)
Q Consensus        46 ---------------~~~~~~~-~~~~l~l~D~~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~   96 (211)
                                     ....+.. .-..+.+.|.||..             ....+...|+...+.+|+.+...+-+  -.
T Consensus       107 t~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~d--~a  184 (657)
T KOG0446|consen  107 TDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANSD--IA  184 (657)
T ss_pred             HHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchhhh--hh
Confidence                           0000000 11246688999821             23446777888888888888775521  11


Q ss_pred             HHHHHHHHHHhcCCCCeEEEEEecCCCCC
Q 028251           97 LSSWLEDARQHANPNMSIMLVGNKCDLAH  125 (211)
Q Consensus        97 ~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  125 (211)
                      ...++....+....+...+-|++|.|+.+
T Consensus       185 ts~alkiarevDp~g~RTigvitK~Dlmd  213 (657)
T KOG0446|consen  185 TSPALVVAREVDPGGSRTLEVITKFDFMD  213 (657)
T ss_pred             cCHHHHHHHhhCCCccchhHHhhhHHhhh
Confidence            23444555555545677788888888754

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=96.79  E-value=0.0012  Score=50.42  Aligned_cols=23  Identities=39%  Similarity=0.445  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|++|+|||||++.+.+..
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          28 ILAIIGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57999999999999999998653

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=96.79  E-value=0.0014  Score=46.01  Aligned_cols=22  Identities=18%  Similarity=0.434  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .|+|+|+.++|||||++.|+..
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~   23 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINE   23 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998754

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=96.79  E-value=0.0012  Score=45.13  Aligned_cols=21  Identities=24%  Similarity=0.406  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 028251            9 YIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         9 i~vvG~~~~GKSsli~~l~~~   29 (211)
                      |+|.|.+||||||+.+.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999755

...

>TIGR03263 guanyl_kin guanylate kinase

Probab=96.78  E-value=0.0012  Score=48.13  Aligned_cols=22  Identities=36%  Similarity=0.599  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .|+|+|++|+|||||++.|...
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~   24 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEE   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHcc
Confidence            4899999999999999999864

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=96.77  E-value=0.0096  Score=44.34  Aligned_cols=22  Identities=36%  Similarity=0.489  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q 028251            9 YIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         9 i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      |+|+|++|+||||+++.++..-
T Consensus         4 ilI~GptGSGKTTll~~ll~~~   25 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDYI   25 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999987553

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=96.77  E-value=0.0013  Score=48.91  Aligned_cols=21  Identities=24%  Similarity=0.425  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 028251            9 YIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         9 i~vvG~~~~GKSsli~~l~~~   29 (211)
                      |+|.|++|||||||++.|...
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999764

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=96.76  E-value=0.0014  Score=49.65  Aligned_cols=22  Identities=23%  Similarity=0.437  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .++|+|++|+|||||++.+.+.
T Consensus        28 ~~~i~G~nGsGKSTLl~~i~G~   49 (220)
T cd03265          28 IFGLLGPNGAGKTTTIKMLTTL   49 (220)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999875

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=96.76  E-value=0.0013  Score=49.40  Aligned_cols=23  Identities=26%  Similarity=0.388  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|++|+|||||++.+.+..
T Consensus        30 ~~~l~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        30 FLFLTGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58899999999999999998653

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=96.76  E-value=0.0014  Score=48.99  Aligned_cols=23  Identities=43%  Similarity=0.563  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|++|+|||||++.+.+..
T Consensus        26 ~~~i~G~nGsGKSTLl~~l~G~~   48 (206)
T TIGR03608        26 MYAIIGESGSGKSTLLNIIGLLE   48 (206)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998753

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=96.76  E-value=0.0014  Score=49.32  Aligned_cols=23  Identities=30%  Similarity=0.488  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|++|+|||||++.+.+..
T Consensus        29 ~~~i~G~nGsGKSTLl~~l~G~~   51 (214)
T cd03292          29 FVFLVGPSGAGKSTLLKLIYKEE   51 (214)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999998753

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=96.75  E-value=0.0014  Score=49.32  Aligned_cols=23  Identities=26%  Similarity=0.443  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|++|+|||||++.+.+..
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03259          28 FLALLGPSGCGKTTLLRLIAGLE   50 (213)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            48899999999999999998653

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=96.75  E-value=0.00094  Score=48.60  Aligned_cols=25  Identities=28%  Similarity=0.466  Sum_probs=21.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCC
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      -.-++|.||+|+|||||+++|+...
T Consensus         4 G~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           4 GLLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhc
Confidence            3458899999999999999999765

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=96.75  E-value=0.0013  Score=49.42  Aligned_cols=22  Identities=27%  Similarity=0.525  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .++++|++|+|||||++.+.+.
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~Gl   48 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILATL   48 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999865

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14530 adenylate kinase; Provisional

Probab=96.75  E-value=0.0014  Score=49.41  Aligned_cols=22  Identities=18%  Similarity=0.450  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHh
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      .+|+|+|++||||||+.+.|..
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999863

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	211
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		2e-81
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		5e-81
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		4e-66
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		7e-66
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		6e-59
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		2e-58
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		5e-56
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		3e-55
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		2e-51
4fmc_B	171	Espg-Rab1 Complex Length = 171		4e-50
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		5e-50
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		1e-49
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		1e-49
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		1e-49
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		2e-49
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		4e-49
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		5e-49
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		5e-49
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		6e-49
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		7e-49
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		2e-48
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		2e-48
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		3e-48
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		4e-48
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		4e-48
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		5e-48
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		5e-48
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		2e-47
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		2e-47
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		6e-47
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		9e-47
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		1e-46
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		2e-46
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		5e-46
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		6e-45
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		9e-45
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		1e-44
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		2e-44
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		7e-44
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		7e-44
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		5e-43
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		5e-42
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		5e-42
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		1e-41
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		6e-41
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		4e-40
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		4e-40
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		7e-40
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		7e-40
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		8e-40
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		1e-39
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		1e-39
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		1e-39
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		1e-39
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		1e-39
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		1e-39
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		2e-39
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		2e-39
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		7e-39
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		8e-39
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		1e-38
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		2e-38
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		6e-38
2efc_B	181	Ara7-GdpATVPS9A Length = 181		8e-38
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		1e-37
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		2e-37
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		7e-37
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		2e-36
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		5e-36
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		6e-36
4fmc_F	117	Espg-Rab1 Complex Length = 117		8e-36
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		1e-35
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		5e-35
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		6e-35
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		6e-35
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		7e-34
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		2e-33
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		2e-32
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		3e-32
1vg1_A	185	Gdp-bound Rab7 Length = 185		6e-32
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		6e-32
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		1e-31
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		1e-31
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		1e-31
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		2e-31
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		3e-31
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		3e-31
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		5e-31
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		6e-31
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		6e-31
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		8e-30
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		4e-29
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		6e-29
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		7e-29
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		7e-28
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		1e-27
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		2e-27
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		2e-27
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		9e-27
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		5e-26
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		8e-24
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		2e-23
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		1e-22
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		2e-22
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		3e-22
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		3e-22
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		3e-22
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		3e-22
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		4e-22
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		5e-22
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		8e-22
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		9e-22
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		9e-22
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-21
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		1e-21
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		1e-21
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		1e-21
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		3e-21
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		5e-21
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		6e-21
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		6e-21
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		6e-21
1byu_A	216	Canine Gdp-Ran Length = 216		7e-21
2bku_A	177	Kap95p:rangtp Complex Length = 177		7e-21
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		7e-21
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		7e-21
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		8e-21
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		9e-21
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		1e-20
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		1e-20
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		2e-20
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		2e-20
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		3e-20
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		4e-20
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		5e-20
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		5e-20
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		6e-20
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		8e-20
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		1e-19
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		4e-19
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		4e-19
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		4e-19
3icq_B	171	Karyopherin Nuclear State Length = 171		4e-19
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		2e-18
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		3e-18
1s1c_A	183	Crystal Structure Of The Complex Between The Human		4e-18
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		4e-18
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		4e-18
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		4e-18
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		4e-18
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		4e-18
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		4e-18
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		4e-18
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		5e-18
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		5e-18
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		5e-18
1mh1_A	186	Small G-Protein Length = 186		6e-18
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		6e-18
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		7e-18
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		8e-18
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		9e-18
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		9e-18
4q21_A	189	Molecular Switch For Signal Transduction: Structura		1e-17
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		1e-17
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-17
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		1e-17
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		1e-17
1wq1_R	166	Ras-Rasgap Complex Length = 166		1e-17
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		1e-17
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		1e-17
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		1e-17
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		1e-17
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		1e-17
6q21_A	171	Molecular Switch For Signal Transduction: Structura		1e-17
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		1e-17
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		1e-17
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		2e-17
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		2e-17
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		2e-17
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		2e-17
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		2e-17
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		2e-17
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		2e-17
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		2e-17
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		2e-17
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		2e-17
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		2e-17
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		2e-17
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		2e-17
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		2e-17
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		3e-17
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		3e-17
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		3e-17
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		3e-17
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		3e-17
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-17
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		4e-17
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		4e-17
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		4e-17
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		4e-17
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		5e-17
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		5e-17
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		5e-17
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		5e-17
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		5e-17
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		6e-17
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		6e-17
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		7e-17
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		7e-17
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		9e-17
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		9e-17
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-16
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		1e-16
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		1e-16
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		1e-16
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		1e-16
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		1e-16
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		1e-16
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		1e-16
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		1e-16
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		2e-16
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		2e-16
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		2e-16
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		2e-16
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		2e-16
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		2e-16
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		3e-16
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		3e-16
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		4e-16
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		4e-16
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		4e-16
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		8e-16
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		9e-16
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		1e-15
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		1e-15
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		1e-15
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		1e-15
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		1e-15
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		2e-15
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		2e-15
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		3e-15
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		3e-15
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		3e-15
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		3e-15
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		1e-14
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		1e-14
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		2e-14
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		5e-14
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		1e-13
3c5c_A	187	Crystal Structure Of Human Ras-Like, Family 12 Prot		3e-13
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		5e-13
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		7e-13
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		8e-13
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		8e-13
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		8e-13
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		8e-13
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		9e-13
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		9e-13
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		9e-13
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		1e-12
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		1e-12
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		1e-12
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		1e-12
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		1e-12
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		1e-12
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		1e-12
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		1e-12
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		1e-12
2kb0_A	178	Cdc42(T35a) Length = 178		2e-12
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		2e-12
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		2e-12
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		3e-12
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		3e-12
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		5e-12
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		6e-12
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		6e-12
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		6e-12
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		7e-12
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		8e-12
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		2e-11
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		3e-11
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		4e-11
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		5e-11
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		7e-11
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		7e-11
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		8e-11
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		4e-10
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		6e-10
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		2e-09
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		3e-09
1ksh_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati		2e-06
1ksg_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt		2e-06
3doe_A	192	Complex Of Arl2 And Bart, Crystal Form 1 Length = 1		2e-06
3d6t_B	171	Structure Of The Roc Domain From The Parkinson's Di		5e-06
2zej_A	184	Structure Of The Roc Domain From The Parkinson's Di		5e-06
1moz_A	183	Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo		9e-06
4gok_B	169	The Crystal Structure Of Arl2gppnhp In Complex With		1e-05
1ksj_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Seme		3e-05
2h17_A	181	Structure Of Human Adp-Ribosylation Factor-Like 5 (		3e-05
1z6y_A	179	Structure Of Human Adp-Ribosylation Factor-Like 5 L		3e-05
2h16_A	183	Structure Of Human Adp-Ribosylation Factor-Like 5 (		3e-05
1zj6_A	187	Crystal Structure Of Human Arl5 Length = 187		3e-05
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		4e-05
1yzg_A	179	Structure Of Human Adp-ribosylation Factor-like 8 L		4e-05
2b6h_A	192	Structure Of Human Adp-Ribosylation Factor 5 Length		9e-05
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		1e-04
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		1e-04
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		1e-04
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		1e-04
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		1e-04
1r4a_A	165	Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac		2e-04
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		2e-04
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		2e-04
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		2e-04
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		2e-04
3lrp_A	181	Crystal Structure Of Plasmodium Falciparum Adp-Ribo		2e-04
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		2e-04
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		4e-04
3o47_A	329	Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le		5e-04
1hur_A	180	Human Adp-Ribosylation Factor 1 Complexed With Gdp,		6e-04
1re0_A	164	Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe		6e-04
1rrg_A	181	Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com		7e-04
3rd1_A	178	Structure Of An Adp Ribosylation Factor From Entamo		7e-04
1z6x_A	180	Structure Of Human Adp-Ribosylation Factor 4 Length		8e-04

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score =  298 bits (762), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 138/168 (82%), Positives = 153/168 (91%)
Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           +Y YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TIDG+ IKLQIWD
Sbjct: 6   AYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWD 65
Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL++WLEDARQH+N NM IML+GNK 
Sbjct: 66  TAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKS 125
Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
           DL  RR V KEEGE FA+E+GL+F+E SA+TA NVEEAFI TA +I +
Sbjct: 126 DLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYE 173

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score =  296 bits (759), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 140/170 (82%), Positives = 154/170 (90%)
Query: 5   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG 64
           YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMV IDG+ IKLQIWDTAG
Sbjct: 20  YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 79
Query: 65  QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124
           QESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQH++ NM IML+GNK DL 
Sbjct: 80  QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 139
Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG 174
            RR V +EEGE FA+E+GL+F+E SA+TA NVEEAFI TA +I + IQ+G
Sbjct: 140 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQG 189

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score =  247 bits (630), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 116/171 (67%), Positives = 139/171 (81%)
Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           +Y Y+FKYIIIGD GVGKSCLL QFT+K+F      TIGVEFG R++ + G+ IKLQIWD
Sbjct: 26  NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWD 85
Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQ  FR++TRSYYRGAAGAL+VYDITRR T+NHLSSWL DAR   NPN  I+L+GNK 
Sbjct: 86  TAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKA 145
Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 172
           DL  +R V+ EE +QFA+ENGLLFLEASA+T +NVE+AF++ A KI QNIQ
Sbjct: 146 DLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQ 196

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score =  246 bits (628), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 115/169 (68%), Positives = 138/169 (81%)
Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           +Y Y+FKYIIIGD GVGKSCLL QFT+K+F      TIGVEFG R++ + G+ IKLQIWD
Sbjct: 11  NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWD 70
Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE FR++TRSYYRGAAGAL+VYDITRR T+NHLSSWL DAR   NPN  I+L+GNK 
Sbjct: 71  TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKA 130
Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           DL  +R V+ EE +QFA+ENGLLFLEASA+T +NVE+AF++ A KI QN
Sbjct: 131 DLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQN 179

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score =  223 bits (568), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 105/176 (59%), Positives = 137/176 (77%)
Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           +YD+LFK+++IG+ G GKSCLL QF +K+F+   + TIGVEFG++++ + G+ +KLQIWD
Sbjct: 6   TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWD 65
Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE FRS+TRSYYRGAAGALLVYDIT RET+N L++WL DAR  A+ N+ I+L GNK 
Sbjct: 66  TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKK 125
Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALD 177
           DL   R V+  E  +FA+EN L+FLE SA T +NVEEAF++ A KIL  I+ G LD
Sbjct: 126 DLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELD 181

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score =  221 bits (563), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 105/174 (60%), Positives = 132/174 (75%)
Query: 4   DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTA 63
           D+LFK+++IG  G GKSCLL QF + +F+   + TIGVEFG+R+V + G+ +KLQIWDTA
Sbjct: 23  DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTA 82
Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 123
           GQE FRS+TRSYYRGAAGALLVYDIT RET+N L++WL DAR  A+PN+ ++L GNK DL
Sbjct: 83  GQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDL 142
Query: 124 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALD 177
              R V+  E  +FA+EN L+FLE SA T +NVEEAF+K A  IL  I  G LD
Sbjct: 143 DPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGELD 196

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score =  213 bits (542), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 100/168 (59%), Positives = 132/168 (78%)
Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           +YD+LFK+++IG+ G GKSCLL QF +K+F+   + TIGVEFG++++ + G+ +KLQIWD
Sbjct: 7   TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWD 66
Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE FRS+TRSYYRGAAGALLVYDIT RET+N L++WL DAR  A+ N+ I+L GNK 
Sbjct: 67  TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKK 126
Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
           DL   R V+  E  +FA+EN L+FLE SA T ++VEEAF++ A KIL 
Sbjct: 127 DLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILN 174

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score =  211 bits (536), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 99/168 (58%), Positives = 131/168 (77%)
Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           +YD+LFK+++IG+ G GKSCLL QF +K+F+   + TIGVEFG++++ + G+ +KLQIWD
Sbjct: 4   TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWD 63
Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAG E FRS+TRSYYRGAAGALLVYDIT RET+N L++WL DAR  A+ N+ I+L GNK 
Sbjct: 64  TAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKK 123
Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
           DL   R V+  E  +FA+EN L+FLE SA T ++VEEAF++ A KIL 
Sbjct: 124 DLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILN 171

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score =  197 bits (502), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 91/184 (49%), Positives = 132/184 (71%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YDYLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R + +DG+ IKLQIWDT
Sbjct: 13  YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 72
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N++ +LVGNKCD
Sbjct: 73  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 132
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 182
           L  ++ V     ++FA   G+ FLE SA+ A NVE++F+  AA+I + +  GA     ++
Sbjct: 133 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEK 192
Query: 183 SGIK 186
           S +K
Sbjct: 193 SNVK 196

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score =  194 bits (492), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 87/165 (52%), Positives = 123/165 (74%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YDYLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R + +DG+ IKLQIWDT
Sbjct: 3   YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 62
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N++ +LVGNKCD
Sbjct: 63  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 122
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           L  ++ V     ++FA   G+ FLE SA+ A NVE++F+  AA+I
Sbjct: 123 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score =  193 bits (491), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 87/165 (52%), Positives = 123/165 (74%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YDYLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R + +DG+ IKLQIWDT
Sbjct: 22  YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 81
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N++ +LVGNKCD
Sbjct: 82  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 141
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           L  ++ V     ++FA   G+ FLE SA+ A NVE++F+  AA+I
Sbjct: 142 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 186

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score =  192 bits (488), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 86/165 (52%), Positives = 123/165 (74%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YDYLFK ++IGD+GVGK+CLLL+F D  +   +  TIGV+F  R + +DG+ IKLQIWDT
Sbjct: 13  YDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 72
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N++ +LVGNKCD
Sbjct: 73  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 132
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           L  ++ V     ++FA   G+ FLE SA+ A NVE++F+  AA+I
Sbjct: 133 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score =  192 bits (488), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 87/165 (52%), Positives = 122/165 (73%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YDYLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R + +DG+ IKLQIWDT
Sbjct: 30  YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 89
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N++ +LVGNKCD
Sbjct: 90  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 149
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           L  ++ V     ++FA   G+ FLE SA+ A NVE++F   AA+I
Sbjct: 150 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEI 194

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score =  192 bits (487), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 84/170 (49%), Positives = 126/170 (74%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YDYLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R ++++ + +KLQIWDT
Sbjct: 6   YDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDT 65
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE FR+IT SYYRGA G ++VYD+T R++F+++  W+++  ++A  N++ +LVGNKCD
Sbjct: 66  AGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCD 125
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 172
           L  +R V+ +EG + A  +G+ F+E SA+ A NVE+AF   A +I + +Q
Sbjct: 126 LVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEIKKRVQ 175

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score =  191 bits (486), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 91/159 (57%), Positives = 114/159 (71%)
Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           SYDYLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +DG+ IK QIWD
Sbjct: 16  SYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 75
Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE +R+IT +YYRGA GALLVYDI +  T+ ++  WL++ R HA+ N+ IMLVGNK 
Sbjct: 76  TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKS 135
Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
           DL H RAV  +E   FA++NGL F+E SA  + NVE AF
Sbjct: 136 DLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 174

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score =  190 bits (483), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 89/208 (42%), Positives = 136/208 (65%), Gaps = 7/208 (3%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YDYLFK ++IG++GVGKSCLLL+F+D  +   +  TIGV+F  + V +DG+ +KLQIWDT
Sbjct: 5   YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDT 64
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE FR+IT SYYRG+ G ++VYD+T +E+FN +  WL++  ++A   +  +LVGNKCD
Sbjct: 65  AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD 124
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 182
           L  +R V  +  ++FA  N + FLE SA  + NVE+AF+  A +I +++ +  L+    +
Sbjct: 125 LKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQK 184
Query: 183 SGIKVGYGRGQGPSGARDGTVSQRGGCC 210
                     +G    +  +++  GGCC
Sbjct: 185 K-------EDKGNVNLKGQSLTNTGGCC 205

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score =  190 bits (482), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 86/165 (52%), Positives = 122/165 (73%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YD LFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R + +DG+ IKLQIWDT
Sbjct: 3   YDALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 62
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N++ +LVGNKCD
Sbjct: 63  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 122
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           L  ++ V     ++FA   G+ FLE SA+ A NVE++F+  AA+I
Sbjct: 123 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score =  190 bits (482), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 94/183 (51%), Positives = 123/183 (67%), Gaps = 2/183 (1%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YDYLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +DG+ IK QIWDT
Sbjct: 2   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE +R IT +YYRGA GALLVYDI +  T+ ++  WL++ R HA+ N+ IMLVGNK D
Sbjct: 62  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 121
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGAL--DAVN 180
           L H RAV  +E   FA++N L F+E SA  + NVEEAF     +I + + +  +   A +
Sbjct: 122 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAH 181
Query: 181 DQS 183
           D+S
Sbjct: 182 DES 184

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score =  190 bits (482), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 86/165 (52%), Positives = 122/165 (73%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YDYLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R + +DG+ IKLQIWDT
Sbjct: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 64
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N++ +LVG KCD
Sbjct: 65  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCD 124
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           L  ++ V     ++FA   G+ FLE SA+ A NVE++F+  AA+I
Sbjct: 125 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 169

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score =  189 bits (481), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 90/158 (56%), Positives = 113/158 (71%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YDYLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +DG+ IK QIWDT
Sbjct: 26  YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 85
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE +R+IT +YYRGA GALLVYDI +  T+ ++  WL++ R HA+ N+ IMLVGNK D
Sbjct: 86  AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 145
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
           L H RAV  +E   FA++NGL F+E SA  + NVE AF
Sbjct: 146 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 183

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score =  188 bits (478), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 94/202 (46%), Positives = 130/202 (64%), Gaps = 5/202 (2%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YD LFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + I+G+ IK QIWDT
Sbjct: 10  YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDT 69
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE +R+IT +YYRGA GAL+VYDI++  ++ + + WL + R++A+ N+++ L+GNK D
Sbjct: 70  AGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSD 129
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 182
           LAH RAV  EE + FA+EN LLF E SA  ++NV++AF +    I Q + +  +D     
Sbjct: 130 LAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDL---- 185
Query: 183 SGIKVGYGRGQGPSGARDGTVS 204
            G     G   G S     T+S
Sbjct: 186 -GDSSANGNANGASAPNGPTIS 206

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score =  188 bits (478), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 93/208 (44%), Positives = 136/208 (65%), Gaps = 6/208 (2%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YDYLFK ++IG++GVGKSCLLL+F+D  +   +  TIGV+F  + V +DG+ +KLQIWDT
Sbjct: 5   YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDT 64
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE FR+IT SYYRG+ G ++VYD+T +E+FN +  WL++  ++A   +  +LVGNKCD
Sbjct: 65  AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD 124
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 182
           L  +R V  +  ++FA  N + FLE SA  + NVE+AF+  A +I +++ +  L+    +
Sbjct: 125 LKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQK 184
Query: 183 SGIKVGYGRGQGPSGARDGTVSQRGGCC 210
              K G    +G S    G     GGCC
Sbjct: 185 KEDK-GNVNLKGQSLTNTG-----GGCC 206

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score =  187 bits (475), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 89/158 (56%), Positives = 112/158 (70%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YDYLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +DG+ IK QIWDT
Sbjct: 5   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 64
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AG E +R+IT +YYRGA GALLVYDI +  T+ ++  WL++ R HA+ N+ IMLVGNK D
Sbjct: 65  AGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 124
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
           L H RAV  +E   FA++NGL F+E SA  + NVE AF
Sbjct: 125 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 162

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score =  187 bits (475), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 85/165 (51%), Positives = 121/165 (73%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YDYLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R + +DG+ IKLQIWDT
Sbjct: 6   YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 65
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE FR+IT SYYRGA G ++VYD+T +E++ ++  WL++  ++A+ N++ +LVGNK D
Sbjct: 66  AGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSD 125
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           L  ++ V     ++FA   G+ FLE SA+ A NVE+AF+  AA+I
Sbjct: 126 LTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score =  187 bits (475), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 85/165 (51%), Positives = 121/165 (73%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YDYLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R + +DG+ IKLQIWDT
Sbjct: 6   YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 65
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE FR+IT SYYRGA G ++VYD+T +E++ ++  WL++  ++A+ N++ +LVGNK D
Sbjct: 66  AGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSD 125
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           L  ++ V     ++FA   G+ FLE SA+ A NVE+AF+  AA+I
Sbjct: 126 LTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score =  187 bits (474), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 89/158 (56%), Positives = 112/158 (70%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YDYLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +DG+ IK QIWDT
Sbjct: 26  YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 85
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AG E +R+IT +YYRGA GALLVYDI +  T+ ++  WL++ R HA+ N+ IMLVGNK D
Sbjct: 86  AGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 145
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
           L H RAV  +E   FA++NGL F+E SA  + NVE AF
Sbjct: 146 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 183

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score =  187 bits (474), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 82/166 (49%), Positives = 120/166 (72%)
Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           +YDYLFK ++IGD+GVGK+C+L +F++  F      TIG++F  R + +DG+ IKLQIWD
Sbjct: 4   TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWD 63
Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE FR+IT +YYRGA G +LVYDIT  ++F+++ +W+ +  +HA+ ++  M++GNKC
Sbjct: 64  TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKC 123
Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           D+  +R VSKE GE+ A + G+ F+E SA+   NVE AF   A  I
Sbjct: 124 DVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score =  184 bits (468), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 88/158 (55%), Positives = 111/158 (70%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YDYLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +DG+ IK QIWDT
Sbjct: 8   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 67
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AG E +R+IT +YYRGA GALLVYDI +  T+ ++  WL++ R HA+ N+ I LVGNK D
Sbjct: 68  AGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSD 127
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
           L H RAV  +E   FA++NGL F+E SA  + NVE AF
Sbjct: 128 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 165

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score =  184 bits (468), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 88/158 (55%), Positives = 111/158 (70%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YDYLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +DG+ IK QIWDT
Sbjct: 2   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AG E +R+IT +YYRGA GALLVYDI +  T+ ++  WL++ R HA+ N+ I LVGNK D
Sbjct: 62  AGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSD 121
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
           L H RAV  +E   FA++NGL F+E SA  + NVE AF
Sbjct: 122 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 159

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score =  183 bits (464), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 81/164 (49%), Positives = 118/164 (71%)
Query: 4   DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTA 63
           DYLFK ++IGD+GVGK+C+L +F++  F      TIG++F  R + +DG+ IKLQIWDTA
Sbjct: 4   DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 63
Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 123
           GQE FR+IT +YYRGA G +LVYDIT  ++F+++ +W+ +  +HA+ ++  M++GNKCD+
Sbjct: 64  GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV 123
Query: 124 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
             +R VSKE GE+ A + G+ F+E SA+   NVE AF   A  I
Sbjct: 124 NDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 167

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score =  182 bits (463), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 83/165 (50%), Positives = 119/165 (72%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YDYLFK ++IG++GVGKSCLLL+F+D  +   +  TIGV+F  + V +DG+ +KLQIWDT
Sbjct: 18  YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDT 77
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE FR+IT SYYRG+ G ++VYD+T +E+FN +  WL++  ++A   +  +LVGNKCD
Sbjct: 78  AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD 137
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           L  +R V  +  ++FA  N + FLE SA  + NVE+AF+  A +I
Sbjct: 138 LKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 182

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score =  182 bits (462), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 82/160 (51%), Positives = 118/160 (73%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R + +DG+ IKLQIWDTAGQE 
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR 127
           FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N++ +LVGNKCDL  ++
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 128 AVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
            V     ++FA   G+ FLE SA+ A NVE++F+  AA+I
Sbjct: 121 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 160

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score =  181 bits (460), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 84/175 (48%), Positives = 120/175 (68%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YDYLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + ++ + IK QIWDT
Sbjct: 7   YDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDT 66
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AG E +R+IT +YYRGA GAL+VYDI++  ++ + + WL + R++A+ N+++ L+GNK D
Sbjct: 67  AGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSD 126
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALD 177
           LAH RAV  +E + FA EN +LF E SA  + NV++AF +    I Q + +  +D
Sbjct: 127 LAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVSKHQVD 181

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score =  180 bits (457), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 82/168 (48%), Positives = 117/168 (69%), Gaps = 2/168 (1%)
Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           SYD + K ++IGD+GVGKSCLL++F + +F P    TIG++F  + V I+G+ +KLQ+WD
Sbjct: 16  SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWD 75
Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE FR+IT +YYRGA G +LVYD+T   TF ++  W +   +HAN    ++LVGNK 
Sbjct: 76  TAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKS 135
Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
           D+   R V+ ++GE  AKE G+ F+E+SA+   NV E F  T AK++Q
Sbjct: 136 DM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFF-TLAKLIQ 181

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score =  176 bits (447), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 82/166 (49%), Positives = 115/166 (69%), Gaps = 2/166 (1%)
Query: 4   DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTA 63
           D + K ++IGD+GVGKSCLL++F + +F P    TIG++F  + V I+G+ +KLQIWDTA
Sbjct: 1   DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 123
           GQE FR+IT +YYRGA G +LVYDIT   TF ++  W +   +HAN    ++LVGNK D+
Sbjct: 61  GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120
Query: 124 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
              R V+ ++GE  AKE G+ F+E+SA+   NV E F  T AK++Q
Sbjct: 121 -ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFF-TLAKLIQ 164

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score =  176 bits (446), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 85/181 (46%), Positives = 121/181 (66%), Gaps = 2/181 (1%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YD+LFK ++IG+ GVGK+CL+ +FT   F P    TIGV+F  + V I+G  +KLQIWDT
Sbjct: 23  YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDT 82
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE FRSIT+SYYR A   +L YDIT  E+F  L  WL +  Q+A+  +  +LVGNK D
Sbjct: 83  AGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKID 142
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 182
           LA RR VS++  E+F++   + +LE SA+ + NVE+ F+  A +++   ++  L  VN+ 
Sbjct: 143 LAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTL--VNNV 200
Query: 183 S 183
           S
Sbjct: 201 S 201

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score =  176 bits (445), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 83/159 (52%), Positives = 112/159 (70%), Gaps = 1/159 (0%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTI-DGRPIKLQIWD 61
           YDYLFK ++IGD+GVGKS LL +FT   F      TIGVEF  + + + + + IK QIWD
Sbjct: 4   YDYLFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWD 63
Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE +R+IT +YYRGA GALLVYDIT++ +F ++  WL++ R +A+ N+ I+LVGNK 
Sbjct: 64  TAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKS 123
Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
           DL H R ++  +  Q+AK+  L F+E SA  A NVE AF
Sbjct: 124 DLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAF 162

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score =  174 bits (442), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 82/166 (49%), Positives = 114/166 (68%), Gaps = 2/166 (1%)
Query: 4   DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTA 63
           D + K ++IGD+GVGKSCLL++F + +F P    TIG++F  + V I+G+ +KLQIWDTA
Sbjct: 1   DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 123
           GQE FR+IT +YYRGA G +LVYDIT   TF ++  W +   +HAN    ++LVGNK D 
Sbjct: 61  GQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD- 119
Query: 124 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
              R V+ ++GE  AKE G+ F+E+SA+   NV E F  T AK++Q
Sbjct: 120 XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFF-TLAKLIQ 164

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score =  173 bits (438), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 79/164 (48%), Positives = 114/164 (69%), Gaps = 2/164 (1%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           + K ++IGD+GVGKSCLL++F + +F P    TIG++F  + V I+G+ +KLQ+WDTAGQ
Sbjct: 7   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 66
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125
           E FR+IT +YYRGA G +LVYD+T   TF ++  W +   +HAN    ++LVGNK D+  
Sbjct: 67  ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-E 125
Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
            R V+ ++GE  AKE G+ F+E+SA+   NV E F  T AK++Q
Sbjct: 126 TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFF-TLAKLIQ 168

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score =  173 bits (438), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 80/166 (48%), Positives = 114/166 (68%), Gaps = 2/166 (1%)
Query: 4   DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTA 63
           D + K ++IGD+GVGKSCLL++F + +F P    TIG++F  + V I+G+ +KLQ+WDTA
Sbjct: 1   DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 60
Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 123
           GQE FR+IT +YYRGA G +LVYD+T   TF ++  W +   +HAN    ++LVGNK D 
Sbjct: 61  GQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD- 119
Query: 124 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
              R V+ ++GE  AKE G+ F+E+SA+   NV E F  T AK++Q
Sbjct: 120 XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFF-TLAKLIQ 164

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  170 bits (431), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 76/166 (45%), Positives = 118/166 (71%), Gaps = 1/166 (0%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           YD  FK +++GD+GVGK+CLL++F D  F       T+G++F  +++ +DG  +KLQ+WD
Sbjct: 7   YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWD 66
Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE FRS+T +YYR A   LL+YD+T + +F+++ +WL +  ++A  ++++ML+GNK 
Sbjct: 67  TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKV 126
Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           D AH R V +E+GE+ AKE GL F+E SA+T  NV+ AF   A ++
Sbjct: 127 DSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score =  167 bits (422), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 80/171 (46%), Positives = 110/171 (64%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           Y+++FK ++IG++GVGK+ LL +FT   F      TIGVEF  R V +    +K QIWDT
Sbjct: 22  YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDT 81
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AG E +R+IT +YYRGA GALLV+D+T+ +T+  +  WL++   HA   + +MLVGNK D
Sbjct: 82  AGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSD 141
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 173
           L+  R V  EE   FA+ NGLLFLE SA  + NVE AF     +I   + +
Sbjct: 142 LSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSK 192

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score =  167 bits (422), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 80/171 (46%), Positives = 110/171 (64%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           Y+++FK ++IG++GVGK+ LL +FT   F      TIGVEF  R V +    +K QIWDT
Sbjct: 7   YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDT 66
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AG E +R+IT +YYRGA GALLV+D+T+ +T+  +  WL++   HA   + +MLVGNK D
Sbjct: 67  AGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSD 126
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 173
           L+  R V  EE   FA+ NGLLFLE SA  + NVE AF     +I   + +
Sbjct: 127 LSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSK 177

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score =  166 bits (419), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 77/167 (46%), Positives = 114/167 (68%), Gaps = 1/167 (0%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YD+LFK +++GD  VGK+C++ +F    F      TIGV+F  + + I G+ +KLQIWDT
Sbjct: 26  YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDT 85
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE FR+IT+SYYR A GA+L YDIT+R +F  +  W+ED R++A  N+  +L+GNK D
Sbjct: 86  AGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSD 145
Query: 123 LAHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKIL 168
           L+  R VS  E +  A+   +L  +E SA+ + NVEEAF++ A +++
Sbjct: 146 LSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELI 192

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score =  163 bits (413), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 87/183 (47%), Positives = 117/183 (63%), Gaps = 4/183 (2%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +IIG++GVGKS LLL+FTD  F P    TIGV+F  + +++DG   KL IWDTAGQE
Sbjct: 16  LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSI-MLVGNKCDLAH 125
            FR++T SYYRGA G +LVYD+TRR+TF  L +WL +   +   N  +  LVGNK D   
Sbjct: 76  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKID-KE 134
Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGI 185
            R V + EG +FA+++  LF+EASA+T   V+ AF +   KI+Q    G  ++ N  SG 
Sbjct: 135 NREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKIIQT--PGLWESENQNSGP 192
Query: 186 KVG 188
             G
Sbjct: 193 SSG 195

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score =  160 bits (406), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 72/164 (43%), Positives = 110/164 (67%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++G++ VGKS L+L+F   +F    + TIG  F  + V +D   +K +IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            + S+   YYRGA  A++VYDIT  E+F    +W+++ ++ A+PN+ I L GNK DLA++
Sbjct: 68  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           RAV  +E + +A +N LLF+E SA+T+ NV E F+  A K+ +N
Sbjct: 128 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 171

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score =  160 bits (405), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 72/164 (43%), Positives = 110/164 (67%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++G++ VGKS L+L+F   +F    + TIG  F  + V +D   +K +IWDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            + S+   YYRGA  A++VYDIT  E+F    +W+++ ++ A+PN+ I L GNK DLA++
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           RAV  +E + +A +N LLF+E SA+T+ NV E F+  A K+ +N
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score =  160 bits (404), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 72/164 (43%), Positives = 110/164 (67%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++G++ VGKS L+L+F   +F    + TIG  F  + V +D   +K +IWDTAGQE
Sbjct: 7   FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            + S+   YYRGA  A++VYDIT  E+F    +W+++ ++ A+PN+ I L GNK DLA++
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           RAV  +E + +A +N LLF+E SA+T+ NV E F+  A K+ +N
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  159 bits (403), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 72/164 (43%), Positives = 110/164 (67%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++G++ VGKS L+L+F   +F    + TIG  F  + V +D   +K +IWDTAGQE
Sbjct: 7   FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            + S+   YYRGA  A++VYDIT  E+F    +W+++ ++ A+PN+ I L GNK DLA++
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           RAV  +E + +A +N LLF+E SA+T+ NV E F+  A K+ +N
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  159 bits (403), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 72/164 (43%), Positives = 110/164 (67%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++G++ VGKS L+L+F   +F    + TIG  F  + V +D   +K +IWDTAGQE
Sbjct: 7   FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            + S+   YYRGA  A++VYDIT  E+F    +W+++ ++ A+PN+ I L GNK DLA++
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           RAV  +E + +A +N LLF+E SA+T+ NV E F+  A K+ +N
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score =  159 bits (402), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 78/158 (49%), Positives = 106/158 (67%), Gaps = 1/158 (0%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YD+LFK +IIGD+GVGKS LLL+F D  F   +  TIGV+F  R V I+G  +KLQIWDT
Sbjct: 6   YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDT 65
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE FR+IT +YYRG  G ++VYD+T  E+F ++  WL +  Q+ + ++  +LVGNK D
Sbjct: 66  AGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKND 124
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
              R+ V  E+  +FA + G+   E SA+   NVEE F
Sbjct: 125 DPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF 162

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score =  159 bits (402), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 71/159 (44%), Positives = 103/159 (64%)
Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           ++DY+FK +IIG++ VGK+  L ++ D  F P    T+G++F  + +  + + IKLQIWD
Sbjct: 1   NFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWD 60
Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE +R+IT +YYRGA G +L+YDIT  E+FN +  W    + ++  N  ++LVGNKC
Sbjct: 61  TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKC 120
Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
           D+   R VS E G Q A   G  F EASA+   NV++ F
Sbjct: 121 DMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTF 159

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  159 bits (402), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 72/164 (43%), Positives = 110/164 (67%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++G++ VGKS L+L+F   +F    + TIG  F  + V +D   +K +IWDTAGQE
Sbjct: 7   FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            + S+   YYRGA  A++VYDIT  E+F    +W+++ ++ A+PN+ I L GNK DLA++
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           RAV  +E + +A +N LLF+E SA+T+ NV E F+  A K+ +N
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score =  159 bits (402), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 72/161 (44%), Positives = 107/161 (66%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++G++ VGKS L+L+F   +F    + TIG  F  + V +D   +K +IWDTAGQE
Sbjct: 4   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            + S+   YYRGA  A++VYDIT  +TF    +W+++ ++ A+PN+ I L GNK DLA +
Sbjct: 64  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 123
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           RAV  +E + +A +N LLF+E SA+TA NV E F+  A K+
Sbjct: 124 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  159 bits (401), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 72/164 (43%), Positives = 110/164 (67%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++G++ VGKS L+L+F   +F    + TIG  F  + V +D   +K +IWDTAGQE
Sbjct: 7   FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            + S+   YYRGA  A++VYDIT  E+F    +W+++ ++ A+PN+ I L GNK DLA++
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           RAV  +E + +A +N LLF+E SA+T+ NV E F+  A K+ +N
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score =  159 bits (401), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 71/161 (44%), Positives = 108/161 (67%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++G++ VGKS L+L+F   +F    + TIG  F  + V +D   +K +IWDTAGQE
Sbjct: 9   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            + S+   YYRGA  A++VYDIT +ETF    +W+++ ++ A+P++ I L GNK DLA++
Sbjct: 69  RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANK 128
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           R V  EE + +A +N LLF+E SA+TA NV + F+  A K+
Sbjct: 129 RMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 169

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score =  158 bits (400), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 72/164 (43%), Positives = 108/164 (65%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++G++ VGKS L+L+F   +F    + TIG  F  + V +D   +K +IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            + S+   YYRGA  A++VYDIT  E+F    +W+++ ++ A+PN+ I L GNK DLA++
Sbjct: 68  RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           RAV  +E + +A +N LLF E SA+T+ NV E F   A K+ +N
Sbjct: 128 RAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKLPKN 171

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score =  158 bits (399), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 76/169 (44%), Positives = 114/169 (67%), Gaps = 1/169 (0%)
Query: 4   DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTA 63
           D+  + IIIG  GVGK+ L+ +FTD  F      T+GV+F  + V + G+ I+LQIWDTA
Sbjct: 24  DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 83
Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 123
           GQE F SIT +YYR A G +LVYDIT++ETF+ L  W++   ++A+ +  ++LVGNK D 
Sbjct: 84  GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 143
Query: 124 AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAKILQNI 171
              R +++++GE+FA++  G+ F EASA+   NV+E F+K    IL+ +
Sbjct: 144 ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 192

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score =  156 bits (395), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 71/161 (44%), Positives = 106/161 (65%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++G++ VGKS L+L+F   +F    + TI   F  + V +D   +K +IWDTAGQE
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            + S+   YYRGA  A++VYDIT  +TF    +W+++ ++ A+PN+ I L GNK DLA +
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           RAV  +E + +A +N LLF+E SA+TA NV E F+  A K+
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score =  156 bits (394), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 71/161 (44%), Positives = 106/161 (65%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++G++ VGKS L+L+F   +F    + TIG  F  + V +D   +K +IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            + S+   YYRGA  A++VYDIT  +TF    +W+++ ++ A+PN+ I L GNK DLA +
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           RAV  +E + +A +N LLF+E SA+TA NV E F+  A K+
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score =  155 bits (393), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 70/161 (43%), Positives = 107/161 (66%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++G++ VGKS L+L+F   +F    + TIG  F  + V +D   +K +IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            + S+   YYRGA  A++VYDIT  E+F    +W+++ ++ A+PN+ I L GNK DLA++
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 125
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           RAV  +E + +A +N LLF+E SA+T+ NV E F+  A K+
Sbjct: 126 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 166

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score =  154 bits (390), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 69/159 (43%), Positives = 104/159 (65%)
Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           ++DY+FK +IIG++ VGK+  L ++ D  F P    T+G++F  + V    + +KLQIWD
Sbjct: 19  NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWD 78
Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE +R+IT +YYRGA G +L+YDIT  E+FN +  W    + ++  N  ++LVGNKC
Sbjct: 79  TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKC 138
Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
           D+   R V  E+G+  A++ G  F EASA+   +V +AF
Sbjct: 139 DMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAF 177

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score =  153 bits (387), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 78/193 (40%), Positives = 110/193 (56%), Gaps = 6/193 (3%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           +DY FK +IIG++ VGK+  L ++ D  F P    T+G++F  + +  + + IKLQIWDT
Sbjct: 5   FDYXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 64
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AG E +R+IT +YYRGA G +L YDIT  E+FN +  W    + ++  N  ++LVGNKCD
Sbjct: 65  AGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 124
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 182
               R VS E G Q A   G  F EASA+   NV++ F +    I +   E +LD  +  
Sbjct: 125 XEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKXSE-SLDTAD-- 181
Query: 183 SGIKVGYGRGQGP 195
                  G  QGP
Sbjct: 182 ---PAVTGAKQGP 191

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score =  153 bits (386), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 66/160 (41%), Positives = 104/160 (65%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++GD G GKS L+L+F   +F    + TIG  F ++ + ++   +K +IWDTAGQE 
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR 127
           + S+   YYRGAA A++V+D+T + +F     W+++ +   NPNM + L GNK DL   R
Sbjct: 74  YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 133
Query: 128 AVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
            V+ E+ + +A+ENGL F+E SA+TA NV+E F + A ++
Sbjct: 134 KVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRL 173

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score =  152 bits (385), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 71/170 (41%), Positives = 105/170 (61%)
Query: 4   DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTA 63
           DY+FK ++IG++ VGK+  L ++ D  F P    T+G++F  + V    + IKLQIWDTA
Sbjct: 20  DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTA 79
Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 123
           GQE +R+IT +YYRGA G LL+YDI  +E+F  +  W    + ++  N  ++LVGNKCDL
Sbjct: 80  GQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDL 139
Query: 124 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 173
              R V  E+G + A + G  F EASA+   NV++ F +    I + + E
Sbjct: 140 EDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNE 189

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score =  152 bits (383), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 69/163 (42%), Positives = 108/163 (66%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK + +G+  VGK+ L+ +F    F   +  TIG++F ++ + ++ R ++LQ+WDTAGQE
Sbjct: 3   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            FRS+  SY R +  A++VYDIT   +F   S W++D R     ++ IMLVGNK DLA +
Sbjct: 63  RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADK 122
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
           R ++ EEGEQ AKE  ++F+E SA+T  NV++ F + A+ +L+
Sbjct: 123 RQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALLE 165

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score =  150 bits (378), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 70/161 (43%), Positives = 106/161 (65%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK + +G+  VGK+ L+ +F    F   +  TIG++F ++ + ++ R I+LQ+WDTAGQE
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            FRS+  SY R +A A++VYDIT   +F   + W++D R     ++ IMLVGNK DLA +
Sbjct: 67  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           R VS EEGE+ AKE  ++F+E SA+   NV++ F + AA +
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 167

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score =  148 bits (373), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 68/161 (42%), Positives = 106/161 (65%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK + +G+  VGK+ L+ +F    F   +  TIG++F ++ + ++ R ++LQ+WDTAGQE
Sbjct: 15  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            FRS+  SY R +  A++VYDIT   +F+  S W++D R     ++ IMLVGNK DL+ +
Sbjct: 75  RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 134
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           R VS EEGE+ AKE  ++F+E SA+   NV++ F + AA +
Sbjct: 135 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score =  147 bits (370), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 68/161 (42%), Positives = 105/161 (65%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK + +G+  VGK+ L+ +F    F   +  TIG++F ++ + ++ R ++LQ+WDTAGQE
Sbjct: 2   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            FRS+  SY R +  A++VYDIT   +F   + W++D R     ++ IMLVGNK DLA +
Sbjct: 62  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 121
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           R VS EEGE+ AKE  ++F+E SA+   NV++ F + AA +
Sbjct: 122 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 162

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score =  146 bits (369), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 69/161 (42%), Positives = 105/161 (65%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK + +G+  VGK+ L+ +F    F   +  TIG++F ++ + ++ R I+LQ+WDTAG E
Sbjct: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            FRS+  SY R +A A++VYDIT   +F   + W++D R     ++ IMLVGNK DLA +
Sbjct: 74  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           R VS EEGE+ AKE  ++F+E SA+   NV++ F + AA +
Sbjct: 134 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 174

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score =  146 bits (369), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 64/115 (55%), Positives = 90/115 (78%)
Query: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR 69
           ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R + +DG+ IKLQIWDTAGQE FR
Sbjct: 2   LLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR 61
Query: 70  SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124
           +IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N++ +LVGNKCDL 
Sbjct: 62  TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 116

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score =  145 bits (366), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 67/161 (41%), Positives = 100/161 (62%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K  ++GDTGVGKS ++ +F +  F P  + TIG  F  + V       K  IWDTAGQE
Sbjct: 6   LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            FR++   YYRG+A A++VYDIT+ ETF+ L +W+ + RQH  P++ + + GNKCDL   
Sbjct: 66  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 125
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           R V + + + +A     +F+E SA+ A N+ E FI+ + +I
Sbjct: 126 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score =  144 bits (362), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 67/161 (41%), Positives = 104/161 (64%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK + +G+  VGK+ L+ +F    F   +  TIG++F ++ + ++ R ++LQ+WDTAG E
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            FRS+  SY R +  A++VYDIT   +F   + W++D R     ++ IMLVGNK DLA +
Sbjct: 67  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           R VS EEGE+ AKE  ++F+E SA+   NV++ F + AA +
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 167

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score =  143 bits (361), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 66/161 (40%), Positives = 99/161 (61%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K  ++GDTGVGKS ++ +F +  F P  + TIG  F  + V       K  IWDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            FR++   YYRG+A A++VYDIT+ ETF+ L +W+ + RQH  P++ + + GNKCDL   
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           R V + + + +A     +F+E SA+ A N+ E FI+ + +I
Sbjct: 127 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score =  143 bits (361), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 67/161 (41%), Positives = 104/161 (64%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK + +G+  VGK+ L+ +F    F   +  TIG++F ++ + ++ R ++LQ+WDTAG E
Sbjct: 17  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            FRS+  SY R +  A++VYDIT   +F   + W++D R     ++ IMLVGNK DLA +
Sbjct: 77  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 136
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           R VS EEGE+ AKE  ++F+E SA+   NV++ F + AA +
Sbjct: 137 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 177

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score =  140 bits (352), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 68/163 (41%), Positives = 101/163 (61%), Gaps = 3/163 (1%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++G+  VGKS ++L+F    F    + TIG  F  + VTI+   +K +IWDTAGQE 
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-- 125
           F S+   YYR A  AL+VYD+T+ ++F     W+++  + A+ ++ I LVGNK D     
Sbjct: 65  FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEG 124
Query: 126 -RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
             R V++EEGE+ A+E GLLF E SA+T +NV + F+    KI
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score =  138 bits (348), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 65/161 (40%), Positives = 102/161 (63%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K + +G+  VGK+ ++ +F    F   +  TIG++F ++ + +D  P++LQ+WDTAGQE
Sbjct: 2   YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            FRS+  SY R +A A++VYDIT R++F + + W++D       ++ I LVGNK DL   
Sbjct: 62  RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDL 121
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           R V+ EEG Q A+E    F E SA+   N++  F KTA+K+
Sbjct: 122 RKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score =  135 bits (339), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 66/184 (35%), Positives = 114/184 (61%), Gaps = 15/184 (8%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGR--------- 53
           YDYL K + +GD+GVGK+  L ++TD +F P    T+G++F  + V  + +         
Sbjct: 22  YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKA 81
Query: 54  -PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA---N 109
             + LQ+WDTAGQE FRS+T +++R A G LL++D+T +++F ++ +W+   + +A   N
Sbjct: 82  FKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCEN 141
Query: 110 PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
           P+  I+L+GNK DL  +R V++ +  + A + G+ + E SA T QNVE+A       I++
Sbjct: 142 PD--IVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMK 199
Query: 170 NIQE 173
            +++
Sbjct: 200 RMEQ 203

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score =  134 bits (337), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 100/167 (59%), Gaps = 5/167 (2%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           +FK I+IGD+ VGK+CL  +F   RF    + TIGV+F  R V IDG  IK+Q+WDTAGQ
Sbjct: 20  IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79
Query: 66  ESFR-SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPN-MSIMLVGNKCDL 123
           E FR S+ + YYR     + VYD+T   +F+ L +W+E+ +QH   N +  +LVGNKCDL
Sbjct: 80  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 139
Query: 124 AHRRAVSKEEGEQFAKENGLLFLEASARTAQN---VEEAFIKTAAKI 167
                V  +  ++FA  + +   E SA+   +   VE  F+  A K+
Sbjct: 140 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score =  133 bits (335), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 70/180 (38%), Positives = 108/180 (60%), Gaps = 6/180 (3%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           L K II+GD+GVGK+ L+ Q+ +K+F   +  TIG +F  + V +D R + +QIWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP----NMSIMLVGNKC 121
           E F+S+  ++YRGA   +LV+D+T   TF  L SW ++    A+P    N   +++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVND 181
           DL +R+  +K        +N + + E SA+ A NVE+AF   A   L+  QE  ++  N+
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK--QETEVELYNE 185

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score =  133 bits (335), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 70/180 (38%), Positives = 108/180 (60%), Gaps = 6/180 (3%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           L K II+GD+GVGK+ L+ Q+ +K+F   +  TIG +F  + V +D R + +QIWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP----NMSIMLVGNKC 121
           E F+S+  ++YRGA   +LV+D+T   TF  L SW ++    A+P    N   +++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVND 181
           DL +R+  +K        +N + + E SA+ A NVE+AF   A   L+  QE  ++  N+
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK--QETEVELYNE 185

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score =  132 bits (333), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 66/170 (38%), Positives = 109/170 (64%), Gaps = 15/170 (8%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID--------GRP 54
           YDYL K + +GD+GVGK+  L ++TD +F P    T+G++F  + V  D        G+ 
Sbjct: 8   YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKA 67
Query: 55  IK--LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA---N 109
            K  LQ+WDTAG E FRS+T +++R A G LL++D+T +++F ++ +W+   + +A   N
Sbjct: 68  FKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCEN 127
Query: 110 PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEA 159
           P+  I+L+GNK DL  +R V++ +  + A++ G+ + E SA T QNVE++
Sbjct: 128 PD--IVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score =  132 bits (333), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 66/170 (38%), Positives = 109/170 (64%), Gaps = 15/170 (8%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID--------GRP 54
           YDYL K + +GD+GVGK+  L ++TD +F P    T+G++F  + V  D        G+ 
Sbjct: 8   YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKA 67
Query: 55  IK--LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA---N 109
            K  LQ+WDTAG E FRS+T +++R A G LL++D+T +++F ++ +W+   + +A   N
Sbjct: 68  FKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCEN 127
Query: 110 PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEA 159
           P+  I+L+GNK DL  +R V++ +  + A++ G+ + E SA T QNVE++
Sbjct: 128 PD--IVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score =  132 bits (332), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 69/180 (38%), Positives = 107/180 (59%), Gaps = 6/180 (3%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           L K II+GD+GVGK+ L+ Q+ +K+F   +  TIG +F  + V +D R + +QIWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP----NMSIMLVGNKC 121
           E F+S+  ++YRGA   +LV+D+T   TF  L SW ++    A+P    N   +++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVND 181
           D  +R+  +K        +N + + E SA+ A NVE+AF   A   L+  QE  ++  N+
Sbjct: 128 DFENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK--QETEVELYNE 185

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score =  131 bits (330), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 68/186 (36%), Positives = 111/186 (59%), Gaps = 12/186 (6%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID----------G 52
           YDYL K++ +GD+GVGK+ +L Q+TD +F      T+G++F  + V             G
Sbjct: 8   YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRG 67
Query: 53  RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPN 111
           + I LQ+WDTAG E FRS+T +++R A G LL++D+T  ++F ++ +W+   + HA + N
Sbjct: 68  QRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSEN 127
Query: 112 MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNI 171
             I+L GNK DL  +RAV +EE  + A++ G+ + E SA    N+  A I+    ++   
Sbjct: 128 PDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHA-IEMLLDLIMKR 186
Query: 172 QEGALD 177
            E ++D
Sbjct: 187 MERSVD 192

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score =  131 bits (329), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 97/167 (58%), Gaps = 5/167 (2%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           +FK I+IGD+ VGK+CL  +F   RF    + TIGV+F  R V IDG  IK+Q+WDTAGQ
Sbjct: 29  IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 88
Query: 66  ESFR-SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPN-MSIMLVGNKCDL 123
           E FR S+ + YYR     + VYD T   +F+ L +W+E+ +QH   N +  +LVGNKCDL
Sbjct: 89  ERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 148
Query: 124 AHRRAVSKEEGEQFAKENGLLFLEASARTAQN---VEEAFIKTAAKI 167
                V  +  ++FA  +     E SA+   +   VE  F   A K+
Sbjct: 149 RSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKL 195

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score =  131 bits (329), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 61/154 (39%), Positives = 94/154 (61%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K  ++GDTGVGKS ++ +F    F      TIG  F  + V       K  IWDTAGQE
Sbjct: 24  LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            F S+   YYRG+A A++VYDIT++++F  L  W+++ ++H   N+ + + GNKCDL+  
Sbjct: 84  RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDI 143
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
           R V  ++ +++A+  G + +E SA+ A N+EE F
Sbjct: 144 REVPLKDAKEYAESIGAIVVETSAKNAINIEELF 177

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score =  130 bits (327), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 69/180 (38%), Positives = 107/180 (59%), Gaps = 6/180 (3%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           L K II+GD+GVGK+ L+ Q+ +K+F   +  TIG +F  + V +D R + +QIWDTAG 
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP----NMSIMLVGNKC 121
           E F+S+  ++YRGA   +LV+D+T   TF  L SW ++    A+P    N   +++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVND 181
           DL +R+  +K        +N + + E SA+ A NVE+AF   A   L+  QE  ++  N+
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK--QETEVELYNE 185

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score =  130 bits (327), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 66/170 (38%), Positives = 107/170 (62%), Gaps = 15/170 (8%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID--------GRP 54
           YDYL K + +GD+GVGK+  L ++TD +F P    T+G++F  + V  D        G+ 
Sbjct: 8   YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKA 67
Query: 55  IK--LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA---N 109
            K  LQ+WDTAG E FRS+T +++R A G LL +D+T +++F ++ +W    + +A   N
Sbjct: 68  FKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCEN 127
Query: 110 PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEA 159
           P+  I+L+GNK DL  +R V++ +  + A++ G+ + E SA T QNVE++
Sbjct: 128 PD--IVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score =  130 bits (326), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 66/170 (38%), Positives = 107/170 (62%), Gaps = 15/170 (8%)
Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID--------GRP 54
           YDYL K + +GD+GVGK+  L ++TD +F P    T+G++F  + V  D        G+ 
Sbjct: 8   YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKA 67
Query: 55  IK--LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA---N 109
            K  LQ+WDTAG E FRS+T +++R A G LL +D+T +++F ++ +W    + +A   N
Sbjct: 68  FKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCEN 127
Query: 110 PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEA 159
           P+  I+L+GNK DL  +R V++ +  + A++ G+ + E SA T QNVE++
Sbjct: 128 PD--IVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score =  126 bits (317), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 99/165 (60%)
Query: 5   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG 64
           Y FK +++G+  VGK+ L+L++ + +F   H  T+G  F  + + I G+ + L IWDTAG
Sbjct: 5   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 65  QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124
           QE F ++   YYR + GA+LVYDIT  ++F  + +W+++ R+     + + +VGNK DL 
Sbjct: 65  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
             R VS +E E +A+  G      SA+  + +EE F+    ++++
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score =  124 bits (311), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 63/167 (37%), Positives = 96/167 (57%), Gaps = 6/167 (3%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K ++ GD  VGKS  L++     F+     T+GV+F  + + +DG    LQ+WDTAGQE
Sbjct: 29  YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH- 125
            FRSI +SY+R A G LL+YD+T  ++F ++  W++     A+  + IMLVGNK D+   
Sbjct: 89  RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDT 148
Query: 126 -----RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
                ++ V    GE+ A   G LF E SA+   N+ EA +  A ++
Sbjct: 149 AATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREV 195

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score =  123 bits (309), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 98/165 (59%)
Query: 5   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG 64
           Y FK +++G+  VGK+ L+L++ + +F   H  T+   F  + + I G+ + L IWDTAG
Sbjct: 19  YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 78
Query: 65  QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124
           QE F ++   YYR + GA+LVYDIT  ++F  + +W+++ R+     + + +VGNK DL 
Sbjct: 79  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 138
Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
             R VS +E E +A+  G      SA+  + +EE F+    ++++
Sbjct: 139 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 183

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score =  123 bits (309), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 98/165 (59%)
Query: 5   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG 64
           Y FK +++G+  VGK+ L+L++ + +F   H  T+   F  + + I G+ + L IWDTAG
Sbjct: 5   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 65  QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124
           QE F ++   YYR + GA+LVYDIT  ++F  + +W+++ R+     + + +VGNK DL 
Sbjct: 65  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
             R VS +E E +A+  G      SA+  + +EE F+    ++++
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score =  120 bits (300), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 67/175 (38%), Positives = 107/175 (61%), Gaps = 9/175 (5%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPI-KLQIWDTAG 64
           + K II+GD+GVGK+ L+ ++ + ++   +  TIG +F  + VT+DG  +  +Q+WDTAG
Sbjct: 8   ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 67
Query: 65  QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPN----MSIMLVGNK 120
           QE F+S+  ++YRGA   +LVYD+T   +F ++ SW ++   HAN N       +++GNK
Sbjct: 68  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127
Query: 121 CDLAH-RRAVSKEEGEQFAKENG--LLFLEASARTAQNVEEAFIKTAAKILQNIQ 172
            D    ++ VS++  ++ AK  G   LFL  SA+ A NV+ AF + A   LQ  Q
Sbjct: 128 IDAEESKKIVSEKSAQELAKSLGDIPLFL-TSAKNAINVDTAFEEIARSALQQNQ 181

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score =  119 bits (297), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 63/168 (37%), Positives = 103/168 (61%), Gaps = 6/168 (3%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           LFK I++GD GVGKS L+ ++   +F      TIGVEF  + + +DG  + +QIWDTAGQ
Sbjct: 9   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 68
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKC 121
           E FRS+   +YRG+   LL + +   ++F +LS+W ++   +A+     +   +++GNK 
Sbjct: 69  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 128
Query: 122 DLAHRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKIL 168
           D++ R+ VS EE + + ++NG   + E SA+ A NV  AF +   ++L
Sbjct: 129 DISERQ-VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 175

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score =  119 bits (297), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 64/168 (38%), Positives = 102/168 (60%), Gaps = 6/168 (3%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           LFK I++GD GVGKS L+ ++   +F      TIGVEF  + + +DG  + +QIWDTAGQ
Sbjct: 11  LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 70
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKC 121
           E FRS+   +YRG+   LL + +   ++F +LS+W ++   +A+     +   +++GNK 
Sbjct: 71  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKT 130
Query: 122 DLAHRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKIL 168
           D+  R+ VS EE + + K+NG   + E SA+ + NV  AF +   +IL
Sbjct: 131 DIKERQ-VSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRIL 177

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score =  119 bits (297), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 63/168 (37%), Positives = 103/168 (61%), Gaps = 6/168 (3%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           LFK I++GD GVGKS L+ ++   +F      TIGVEF  + + +DG  + +QIWDTAGQ
Sbjct: 7   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKC 121
           E FRS+   +YRG+   LL + +   ++F +LS+W ++   +A+     +   +++GNK 
Sbjct: 67  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 126
Query: 122 DLAHRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKIL 168
           D++ R+ VS EE + + ++NG   + E SA+ A NV  AF +   ++L
Sbjct: 127 DISERQ-VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 173

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  116 bits (290), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 65/168 (38%), Positives = 99/168 (58%), Gaps = 6/168 (3%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           L K I++GD GVGKS L+ ++   +F      TIGVEF  R + +DGR + LQIWDTAGQ
Sbjct: 7   LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKC 121
           E F+S+   +YRGA   LL + +  R++F +L +W ++   +A+     +   +++GNK 
Sbjct: 67  ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKV 126
Query: 122 DLAHRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKIL 168
           D    R V+ EE + +  ENG   +LE SA+   NV  AF +   ++L
Sbjct: 127 D-KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVL 173

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score =  114 bits (284), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 61/164 (37%), Positives = 88/164 (53%), Gaps = 1/164 (0%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++G+  VGKS ++ ++    F   +  TIGV+F  R + ++   ++L +WDTAGQE
Sbjct: 6   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            F +IT++YYRGA   +LV+  T RE+F  +SSW E        ++   LV NK DL   
Sbjct: 66  EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLDD 124
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
             +  EE E  AK   L F   S +   NV E F   A K LQ 
Sbjct: 125 SCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQK 168

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score =  106 bits (265), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 62/163 (38%), Positives = 89/163 (54%), Gaps = 3/163 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +QF    F   +D TI   +  + V +D +   L+I DTAG E
Sbjct: 6   YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDAQQCMLEILDTAGTE 64
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVGNKCDLAH 125
            F ++   Y +   G  LVY IT + TFN L    E   R     ++ ++LVGNKCDL  
Sbjct: 65  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 124
Query: 126 RRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAKI 167
            R V KE+G+  A++ N   FLE+SA++  NV E F     +I
Sbjct: 125 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score =  105 bits (262), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 62/163 (38%), Positives = 89/163 (54%), Gaps = 3/163 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +QF    F   +D TI   +  + V +D +   L+I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDAQQCMLEILDTAGTE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVGNKCDLAH 125
            F ++   Y +   G  LVY IT + TFN L    E   R     ++ ++LVGNKCDL  
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 122
Query: 126 RRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAKI 167
            R V KE+G+  A++ N   FLE+SA++  NV E F     +I
Sbjct: 123 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score =  102 bits (255), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 60/166 (36%), Positives = 87/166 (52%), Gaps = 4/166 (2%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGR-PIKLQIWDTAGQ 65
            K +++GD   GK+ L   F  + F   +  TIG++F  R +T+ G   + LQIWD  GQ
Sbjct: 7   LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSW---LEDARQHANPNMSIMLVGNKCD 122
                +   Y  GA G LLVYDIT  ++F +L  W   ++   + +     + LVGNK D
Sbjct: 67  TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKID 126
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 168
           L H R +  E+  +F +ENG      SA+T  +V   F K AA+IL
Sbjct: 127 LEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEIL 172

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score =  102 bits (254), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 96/179 (53%), Gaps = 12/179 (6%)
Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MS     K + +GD  VGK+C+L+ +T  +F   +  T+   F A  V +DG+ + L +W
Sbjct: 4   MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VAVDGQIVNLGLW 62
Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGN 119
           DTAGQE +  +    YRGA   +L + +  + ++ N L  W+ + R+ A PN+ I+LVG 
Sbjct: 63  DTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGT 121
Query: 120 KCDLA--------HRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKILQ 169
           K DL         H   ++  +GE+  K+ G   ++E S++T QNV+  F      +LQ
Sbjct: 122 KLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 180

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score =  101 bits (252), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 88/163 (53%), Gaps = 3/163 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +QF    F   +D TI   +  + V +D +   L+I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVGNKCDLAH 125
            F ++   Y +   G  LVY IT + TFN L    E   R     ++ ++LVGNKCDL  
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 126 RRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAKI 167
            R V KE+G+  A++     FLE+SA++  NV E F     +I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 92/163 (56%), Gaps = 2/163 (1%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           L K I++G  GVGKS L LQF    F   ++ T    +  ++V +DG  +++ I DTAGQ
Sbjct: 18  LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 76
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVGNKCDLA 124
           E + +I  +Y+R   G L V+ IT  E+F   + + E   R   + N+  +LVGNK DL 
Sbjct: 77  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 136
Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
            +R VS EE +  A++  + ++E SA+T  NV++ F     +I
Sbjct: 137 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 92/163 (56%), Gaps = 2/163 (1%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           L K I++G  GVGKS L LQF    F   ++ T    +  ++V +DG  +++ I DTAGQ
Sbjct: 6   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 64
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVGNKCDLA 124
           E + +I  +Y+R   G L V+ IT  E+F   + + E   R   + N+  +LVGNK DL 
Sbjct: 65  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 124
Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
            +R VS EE +  A++  + ++E SA+T  NV++ F     +I
Sbjct: 125 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 88/163 (53%), Gaps = 3/163 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +QF    F   +D TI   +  + V +D +   L+I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVGNKCDLAH 125
            F ++   Y +   G  LVY IT + TFN L    E   R     ++ ++LVGNKCDL  
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 126 RRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAKI 167
            R V KE+G+  A++     FLE+SA++  NV E F     +I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score =  100 bits (250), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 92/163 (56%), Gaps = 2/163 (1%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           L K I++G  GVGKS L LQF    F   ++ T    +  ++V +DG  +++ I DTAGQ
Sbjct: 14  LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 72
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVGNKCDLA 124
           E + +I  +Y+R   G L V+ IT  E+F   + + E   R   + N+  +LVGNK DL 
Sbjct: 73  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 132
Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
            +R VS EE +  A++  + ++E SA+T  NV++ F     +I
Sbjct: 133 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score =  100 bits (249), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 91/163 (55%), Gaps = 2/163 (1%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           L K I++G  GVGKS L LQF    F   ++ T    +  ++V +DG  +++ I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 62
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVGNKCDLA 124
           E + +I  +Y+R   G L V+ IT  E+F   + + E   R   + N+  +LVGNK DL 
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122
Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
            +R VS EE +  A +  + ++E SA+T  NV++ F     +I
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score =  100 bits (248), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 89/165 (53%), Gaps = 3/165 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +Q     F   +D TI   +  + V IDG    L I DTAGQE
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAH 125
            + ++   Y R   G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA 
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
            R V   + +  A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score =  100 bits (248), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 89/165 (53%), Gaps = 3/165 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +Q     F   +D TI   +  + V IDG    L I DTAGQE
Sbjct: 4   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAH 125
            + ++   Y R   G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA 
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
            R V   + +  A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 99.8 bits (247), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 98/202 (48%), Gaps = 40/202 (19%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRP------------ 54
           +K +++G++ VGKS ++L+ T   F    + TIG  F   +V ++               
Sbjct: 8   YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67
Query: 55  -------------------------IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT 89
                                    IK  IWDTAGQE + SI   YYRGA  A++V+DI+
Sbjct: 68  INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127
Query: 90  RRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEAS 149
              T +   +W+   +   + N  I+LV NK D  ++  V   E +++A++N LLF++ S
Sbjct: 128 NSNTLDRAKTWVNQLK--ISSNYIIILVANKID-KNKFQVDILEVQKYAQDNNLLFIQTS 184
Query: 150 ARTAQNVEEAFIKTAAKILQNI 171
           A+T  N++  F   A +I +NI
Sbjct: 185 AKTGTNIKNIFYMLAEEIYKNI 206

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 89/165 (53%), Gaps = 3/165 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +Q     F   +D TI   +  + V IDG    L I DTAGQE
Sbjct: 4   YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAH 125
            + ++   Y R   G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA 
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
            R V   + +  A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 89/165 (53%), Gaps = 3/165 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +Q     F   +D TI   +  + V IDG    L I DTAGQE
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAH 125
            + ++   Y R   G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA 
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAG 122
Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
            R V   + +  A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 99.4 bits (246), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 92/164 (56%), Gaps = 3/164 (1%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           L K I++G  GVGKS L LQF    F   ++ T    +  ++V +DG  +++ I DTAG 
Sbjct: 7   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 65
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPN-MSIMLVGNKCDL 123
           E + +I  +Y+R   G LLV+ IT  E+F   + + E   R  A  + + +++VGNK DL
Sbjct: 66  EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 125
Query: 124 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
             RR V  EE    A+E G+ ++E SA+T  NV++ F     +I
Sbjct: 126 EERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 169

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 99.4 bits (246), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 92/164 (56%), Gaps = 3/164 (1%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           L K I++G  GVGKS L LQF    F   ++ T    +  ++V +DG  +++ I DTAG 
Sbjct: 3   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 61
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPN-MSIMLVGNKCDL 123
           E + +I  +Y+R   G LLV+ IT  E+F   + + E   R  A  + + +++VGNK DL
Sbjct: 62  EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 121
Query: 124 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
             RR V  EE    A+E G+ ++E SA+T  NV++ F     +I
Sbjct: 122 EERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 165

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 91/163 (55%), Gaps = 2/163 (1%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           L K I++G  GVGKS L LQF    F   ++ T    +  ++V +DG  +++ I DTAG 
Sbjct: 6   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 64
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVGNKCDLA 124
           E + +I  +Y+R   G L V+ IT  E+F   + + E   R   + N+  +LVGNK DL 
Sbjct: 65  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 124
Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
            +R VS EE +  A++  + ++E SA+T  NV++ F     +I
Sbjct: 125 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 87/162 (53%), Gaps = 3/162 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +Q     F   +D TI   +  + V IDG    L I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 63
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAH 125
            + ++   Y R   G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDL  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP- 122
Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
            R V  ++ +  A+  G+ F+E SA+T Q V++AF     +I
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 97.1 bits (240), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 96/175 (54%), Gaps = 5/175 (2%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++GD G GK+  + +     F+  +  T+GVE    +   +  PIK  +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 122
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL--QNIQEGALDAV 179
           +   K +   F ++  L + + SA++  N E+ F+  A K++   N++  A+ A+
Sbjct: 123 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL 175

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 97.1 bits (240), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 96/175 (54%), Gaps = 5/175 (2%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++GD G GK+  + +     F+  +  T+GVE    +   +  PIK  +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 134
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL--QNIQEGALDAV 179
           +   K +   F ++  L + + SA++  N E+ F+  A K++   N++  A+ A+
Sbjct: 135 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL 187

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 97.1 bits (240), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 96/175 (54%), Gaps = 5/175 (2%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++GD G GK+  + +     F+  +  T+GVE    +   +  PIK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R
Sbjct: 71  KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 129
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL--QNIQEGALDAV 179
           +   K +   F ++  L + + SA++  N E+ F+  A K++   N++  A+ A+
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL 182

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 97.1 bits (240), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 96/175 (54%), Gaps = 5/175 (2%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++GD G GK+  + +     F+  +  T+GVE    +   +  PIK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 129
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL--QNIQEGALDAV 179
           +   K +   F ++  L + + SA++  N E+ F+  A K++   N++  A+ A+
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL 182

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 97.1 bits (240), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++GD G GK+  + +     F+  +  T+GVE    +   +  PIK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 129
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 168
           +   K +   F ++  L + + SA++  N E+ F+  A K++
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 169

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 97.1 bits (240), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++GD G GK+  + +     F+  +  T+GVE    +   +  PIK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 129
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 168
           +   K +   F ++  L + + SA++  N E+ F+  A K++
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 169

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 97.1 bits (240), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 96/175 (54%), Gaps = 5/175 (2%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++GD G GK+  + +     F+  +  T+GVE    +   +  PIK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 129
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL--QNIQEGALDAV 179
           +   K +   F ++  L + + SA++  N E+ F+  A K++   N++  A+ A+
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL 182

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 96.7 bits (239), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++GD G GK+  + +     F+  +  T+GVE    +   +  PIK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 129
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 168
           +   K +   F ++  L + + SA++  N E+ F+  A K++
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 169

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 96.7 bits (239), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 87/156 (55%), Gaps = 3/156 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +QF    F   +D TI   +  + V ID R  +L I DTAGQE F ++   Y R 
Sbjct: 18  KSALTIQFIQSYFVTDYDPTIEDSYTKQCV-IDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 79  AAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G LLV+ +T R +F  +  +     R        ++L+GNK DL H+R V++EEG+Q 
Sbjct: 77  GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQL 136
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 173
           A++  + ++EASA+   NV++AF     ++++  QE
Sbjct: 137 ARQLKVTYMEASAKIRMNVDQAF-HELVRVIRKFQE 171

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 86/159 (54%), Gaps = 1/159 (0%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIG-VEFGARMVTIDGRPIKLQIWDTAGQ 65
           +K  +IGD GVGK+  + +  D RF+  ++ T+G V      +   G  IK  +WDTAGQ
Sbjct: 12  YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125
           E    +   YY GA+GA+L +D+T R T  +L+ W+++ +        I++  NK D+ +
Sbjct: 72  EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN 131
Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA 164
           R+ +SK+   +  K     + E SA+TA N    F+  A
Sbjct: 132 RQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLA 170

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++GD G GK+  + +     F+  +  T+GVE    +   +  PIK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            F  +   YY  A  A++ +D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R
Sbjct: 71  KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 129
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 168
           +   K +   F ++  L + + SA++  N E+ F+  A K++
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 169

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 96/175 (54%), Gaps = 5/175 (2%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++GD G GK+  + +     F+  +  T+GVE    +   +  PIK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            +  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R
Sbjct: 71  KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 129
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL--QNIQEGALDAV 179
           +   K +   F ++  L + + SA++  N E+ F+  A K++   N++  A+ A+
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL 182

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 95/181 (52%), Gaps = 14/181 (7%)
Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MS     K + +GD  VGK+C+L+ +T   F   +  T+   F A +V +DG  + L +W
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLW 59
Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGN 119
           DTAGQE +  +    YRGA   +L + +  + ++ +++  W+ + R +A P + I+LVG 
Sbjct: 60  DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGT 118
Query: 120 KCDLAHRR----------AVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKIL 168
           K DL   +           ++  +GE+  K  G  +++E S++T QNV+  F      +L
Sbjct: 119 KLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIKVVL 178
Query: 169 Q 169
           Q
Sbjct: 179 Q 179

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 65/165 (39%), Positives = 93/165 (56%), Gaps = 10/165 (6%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K  I G  GVGKS L+++F  KRF   +D T+   +     TID   + ++I DTAGQE 
Sbjct: 30  KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED 88
Query: 68  FRSITRS-YYRGAAGALLVYDITRRETFNH---LSSWLEDARQHANPNMSIMLVGNKCDL 123
             +I R  + R   G +LVYDIT R +F     L + L++ ++    N++++LVGNK DL
Sbjct: 89  --TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK--PKNVTLILVGNKADL 144
Query: 124 AHRRAVSKEEGEQFAKENGLLFLEASARTAQ-NVEEAFIKTAAKI 167
            H R VS EEGE+ A E    F E SA T + N+ E F +   ++
Sbjct: 145 DHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++GD G GK+  + +     F+  +  T+GVE    +   +  PIK  +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R
Sbjct: 73  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 131
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 168
           +   K +   F ++  L + + SA++  N E+ F+  A K++
Sbjct: 132 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 171

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 94.4 bits (233), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 95/175 (54%), Gaps = 5/175 (2%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++GD G GK+  + +     F+  +  T+GVE    +   +  PIK  +WDTAG E
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 129
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL--QNIQEGALDAV 179
           +   K +   F ++  L + + SA++  N E+ F+  A K++   N++  A+ A+
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL 182

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++GD G GK+  + +     F+  +  T+GVE    +   +  PIK  +WDTAG E
Sbjct: 7   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R
Sbjct: 67  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 125
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 168
           +   K +   F ++  L + + SA++  N E+ F+  A K++
Sbjct: 126 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 165

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 94.0 bits (232), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 92/172 (53%), Gaps = 14/172 (8%)
Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MS     K + +GD  VGK+C+L+ +T   F   +  T+   F A +V +DG  + L +W
Sbjct: 1   MSTARFIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLW 59
Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGN 119
           DTAGQE +  +    YRGA   LL + +  + ++ ++   WL + + +A P + I+LVG 
Sbjct: 60  DTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYA-PGIPIVLVGT 118
Query: 120 KCDLAHRR----------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
           K DL   +          +++  +GE+  K  G + +LE S++T QNV+  F
Sbjct: 119 KLDLRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF 170

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 93.6 bits (231), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 95/175 (54%), Gaps = 5/175 (2%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++GD G GK+  + +      +  +  T+GVE    +   +  PIK  +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 134
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL--QNIQEGALDAV 179
           +   K +   F ++  L + + SA++  N E+ F+  A K++   N++  A+ A+
Sbjct: 135 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL 187

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +Q     F   +D TI   +  + V IDG    L I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 63
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAH 125
            + ++   Y R   G L V+ I   ++F  +  + E   R   + ++ ++LVGNK DL  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLP- 122
Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
            R V  ++ +  A+  G+ F+E SA+T Q V++AF     +I
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 91.3 bits (225), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 87/166 (52%), Gaps = 3/166 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++GD G GK+  + +     F+  +  TIGVE        +   IK  +WDTAG E
Sbjct: 6   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R
Sbjct: 66  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKER 124
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 172
           +   K +   F ++  L + + SA++  N E+ F+  A K+  N Q
Sbjct: 125 KV--KAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQ 168

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 91.3 bits (225), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 87/166 (52%), Gaps = 3/166 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++GD G GK+  + +     F+  +  TIGVE        +   IK  +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R
Sbjct: 73  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKER 131
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 172
           +   K +   F ++  L + + SA++  N E+ F+  A K+  N Q
Sbjct: 132 KV--KAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQ 175

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 91.3 bits (225), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 78/143 (54%), Gaps = 2/143 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +QF    F   +D TI   +  ++ ++DG P +L I DTAGQE F ++   Y R 
Sbjct: 22  KSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 79  AAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G LLV+ I  R++FN +   + +  R     +  ++LVGNK DL  +R V + E   F
Sbjct: 81  GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAF 140
Query: 138 AKENGLLFLEASARTAQNVEEAF 160
              + + + EASA+   NV+EAF
Sbjct: 141 GASHHVAYFEASAKLRLNVDEAF 163

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 91.3 bits (225), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 87/166 (52%), Gaps = 3/166 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++GD G GK+  + +     F+  +  TIGVE        +   IK  +WDTAG E
Sbjct: 5   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R
Sbjct: 65  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKER 123
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 172
           +   K +   F ++  L + + SA++  N E+ F+  A K+  N Q
Sbjct: 124 KV--KAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQ 167

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 82/166 (49%), Gaps = 14/166 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+ F+  +F  V+  T+   + A  + +DG+ ++L +WDTAGQE 
Sbjct: 8   KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 66
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL---A 124
           +  +    Y      L+ + I   ++  ++        +H  PN+ I+LVGNK DL    
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 126
Query: 125 HRR---------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
           H R          V  EEG   A   G   ++E SA+T   V E F
Sbjct: 127 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 94/181 (51%), Gaps = 14/181 (7%)
Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MS     K + +GD  VGK+CLL+ +T   F   +  T+   F A +V ++G  + L +W
Sbjct: 3   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGATVNLGLW 61
Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGN 119
           DTAGQE +  +    YRGA   +L + +  + ++ ++S  W+ + + +A P + I+LVG 
Sbjct: 62  DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGT 120
Query: 120 KCDLAHRR----------AVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKIL 168
           K DL   +           ++  +GE+  K  G   ++E S+++ +NV+  F      +L
Sbjct: 121 KLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVL 180
Query: 169 Q 169
           Q
Sbjct: 181 Q 181

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 85/166 (51%), Gaps = 14/166 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+ F+  +F  V+  T+   + A  + +DG+ ++L +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 67
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-- 125
           +  +    Y      L+ + I   ++  ++        +H  PN+ I+LVGNK DL +  
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 127
Query: 126 --RRAVSK--------EEGEQFAKENGLL-FLEASARTAQNVEEAF 160
             RR ++K        EEG   A   G   ++E SA+T   V E F
Sbjct: 128 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 84/175 (48%), Gaps = 14/175 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+ F+  +F  V+  T+   + A  + +DG+ ++L +WDTAGQE 
Sbjct: 11  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 69
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL---A 124
           +  +    Y      L+ + I   ++  ++        +H  PN+ I+LVGNK DL    
Sbjct: 70  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 129
Query: 125 HRR---------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKILQ 169
           H R          V  EEG   A   G   ++E SA+T   V E F       LQ
Sbjct: 130 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 184

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 85/166 (51%), Gaps = 14/166 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+ F+  +F  V+  T+   + A  + +DG+ ++L +WDTAGQE 
Sbjct: 8   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 66
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-- 125
           +  +    Y      L+ + I   ++  ++        +H  PN+ I+LVGNK DL +  
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 126
Query: 126 --RRAVSK--------EEGEQFAKENGLL-FLEASARTAQNVEEAF 160
             RR ++K        EEG   A   G   ++E SA+T   V E F
Sbjct: 127 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 85/166 (51%), Gaps = 14/166 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+ F+  +F  V+  T+   + A  + +DG+ ++L +WDTAGQE 
Sbjct: 10  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 68
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-- 125
           +  +    Y      L+ + I   ++  ++        +H  PN+ I+LVGNK DL +  
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 128
Query: 126 --RRAVSK--------EEGEQFAKENGLL-FLEASARTAQNVEEAF 160
             RR ++K        EEG   A   G   ++E SA+T   V E F
Sbjct: 129 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 85/166 (51%), Gaps = 14/166 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+ F+  +F  V+  T+   + A  + +DG+ ++L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 65
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-- 125
           +  +    Y      L+ + I   ++  ++        +H  PN+ I+LVGNK DL +  
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 126 --RRAVSK--------EEGEQFAKENGLL-FLEASARTAQNVEEAF 160
             RR ++K        EEG   A   G   ++E SA+T   V E F
Sbjct: 126 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 84/166 (50%), Gaps = 14/166 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+ F+  +F  V+  T+   + A  + +DG+ ++L +WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIAD-IEVDGKQVELALWDTAGQED 85
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-- 125
           +  +    Y      L+ + I   ++  ++        +H  PN+ I+LVGNK DL    
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXPNVPIILVGNKKDLRQDE 145
Query: 126 --RRAVSKEEGEQFAKENG---------LLFLEASARTAQNVEEAF 160
             RR ++K + E    E G           +LE SA+T + V E F
Sbjct: 146 HTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 85/166 (51%), Gaps = 14/166 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+ F+  +F  V+  T+   + A  + +DG+ ++L +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 67
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-- 125
           +  +    Y      L+ + I   ++  ++        +H  PN+ I+LVGNK DL +  
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 127
Query: 126 --RRAVSK--------EEGEQFAKENGLL-FLEASARTAQNVEEAF 160
             RR ++K        EEG   A   G   ++E SA+T   V E F
Sbjct: 128 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 85/166 (51%), Gaps = 14/166 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+ F+  +F  V+  T+   + A  + +DG+ ++L +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 67
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-- 125
           +  +    Y      L+ + I   ++  ++        +H  PN+ I+LVGNK DL +  
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 127
Query: 126 --RRAVSK--------EEGEQFAKENGLL-FLEASARTAQNVEEAF 160
             RR ++K        EEG   A   G   ++E SA+T   V E F
Sbjct: 128 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 85/161 (52%), Gaps = 2/161 (1%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +I+G   VGK+ L  QF +  F   +D T+   + +++VT+      L + DTAGQ+ 
Sbjct: 26  KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDE 84
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQ-HANPNMSIMLVGNKCDLAHR 126
           +  +  S+  G  G +LVY +T   +F  + S  +   + H    + ++LVGNK DL+  
Sbjct: 85  YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPE 144
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           R V   EG++ A+  G  F+E+SAR  Q  +  F K   +I
Sbjct: 145 REVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTAGQE + ++   Y R 
Sbjct: 23  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 81
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 82  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 140
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 141 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 173

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 84/166 (50%), Gaps = 14/166 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+ F+  +F  V+  T+   + A  + +DG+ ++L +WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIAD-IEVDGKQVELALWDTAGQED 85
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-- 125
           +  +    Y      L+ + I   ++  ++        +H  PN+ I+LVGNK DL    
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDE 145
Query: 126 --RRAVSKEEGEQFAKENG---------LLFLEASARTAQNVEEAF 160
             RR ++K + E    E G           +LE SA+T + V E F
Sbjct: 146 HTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 87.0 bits (214), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 85/168 (50%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +DG+P+ L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 64
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
            +  +    Y     +L+ + +    +F ++ + W  + R H  PN  I+LVG K DL  
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 123
Query: 126 RR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
            +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 87.0 bits (214), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 85/168 (50%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +DG+P+ L +WDTAGQE
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 66
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
            +  +    Y     +L+ + +    +F ++ + W  + R H  PN  I+LVG K DL  
Sbjct: 67  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 125
Query: 126 RR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
            +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 126 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 173

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 87.0 bits (214), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 85/168 (50%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +DG+P+ L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
            +  +    Y     +L+ + +    +F ++ + W  + R H  PN  I+LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 126 RR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
            +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 86.7 bits (213), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 85/168 (50%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +DG+P+ L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
            +  +    Y     +L+ + +    +F ++ + W  + R H  PN  I+LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 126 RR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
            +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTAGQE + ++   Y R 
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 80  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 138
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 171

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTAGQE + ++   Y R 
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 80  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 138
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 171

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTAGQE + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/152 (35%), Positives = 80/152 (52%), Gaps = 3/152 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTAGQE + ++   Y R 
Sbjct: 34  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 92
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  ++ + E   R   + ++ ++LVGNKCDL   R V  ++  + 
Sbjct: 93  GEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLP-TRTVDTKQAHEL 151
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
           AK  G+ F+E SA+T Q VE+AF     +I Q
Sbjct: 152 AKSYGIPFIETSAKTRQGVEDAFYTLVREIRQ 183

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/153 (35%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI  E   + V IDG    L I DTAGQE + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIE-ESYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTAGQE + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVEKYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTAGQE + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDKYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTAGQE + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTAGQE + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDEYMRT 74
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTAGQE + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 88/177 (49%), Gaps = 16/177 (9%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           L K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +DG+P+ L +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGL 213
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLA 124
           E +  +    Y      L+ + +    +F+H+ + W  + R H  PN  I+LVG K DL 
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLR 272
Query: 125 HRR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKIL 168
             +             ++  +G   AKE G + +LE SA T + ++  F +    +L
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 88/177 (49%), Gaps = 16/177 (9%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           L K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +DG+P+ L +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGL 213
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLA 124
           E +  +    Y      L+ + +    +F+H+ + W  + R H  PN  I+LVG K DL 
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLR 272
Query: 125 HRR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKIL 168
             +             ++  +G   AKE G + +LE SA T + ++  F +    +L
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           L K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +DG+P+ L +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGL 213
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLA 124
           E +  +    Y      L+ + +    +F+H+ + W  + R H  PN  I+LVG K DL 
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLR 272
Query: 125 HRR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
             +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTAGQE + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTAGQE + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 84/157 (53%), Gaps = 8/157 (5%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K  I+G   VGKS L +QF + +F   +D TI   F  +++T++G+   LQ+ DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLS----SWLEDARQHANPNMSIMLVGNKCDL 123
           +    ++Y     G +LVY +T  ++F  +       L+   +   P   IMLVGNK DL
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIP---IMLVGNKKDL 123
Query: 124 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
              R +S EEG+  A+     FLE+SA+  Q   + F
Sbjct: 124 HMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 160

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 83/156 (53%), Gaps = 6/156 (3%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K  I+G   VGKS L +QF + +F   +D TI   F  +++T++G+   LQ+ DTAGQ+ 
Sbjct: 3   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 61
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSW---LEDARQHANPNMSIMLVGNKCDLA 124
           +    ++Y     G +LVY +T  ++F  +      L D        + IMLVGNK DL 
Sbjct: 62  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV--GKVQIPIMLVGNKKDLH 119
Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
             R +S EEG+  A+     FLE+SA+  Q   + F
Sbjct: 120 MERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 155

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 88/177 (49%), Gaps = 16/177 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +DG+P+ L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
            +  +    Y      L+ + +    +F ++ + W  + R H  PN  I+LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 126 RR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKILQ 169
            +             ++  +G   AKE G + +LE SA T + ++  F +    +L+
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLK 178

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTAGQE + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGEICLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +DG+P+ L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
            +  +    Y      L+ + +    +F ++ + W  + R H  PN  I+LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 126 RR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
            +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +DG+P+ L +WDTAGQE
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 69
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
            +  +    Y      L+ + +    +F ++ + W  + R H  PN  I+LVG K DL  
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 128
Query: 126 RR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
            +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 129 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 176

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +DG+P+ L +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 89
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
            +  +    Y      L+ + +    +F ++ + W  + R H  PN  I+LVG K DL  
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 148
Query: 126 RR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
            +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 83/156 (53%), Gaps = 6/156 (3%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K  I+G   VGKS L +QF + +F   +D TI   F  +++T++G+   LQ+ DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSW---LEDARQHANPNMSIMLVGNKCDLA 124
           +    ++Y     G +LVY +T  ++F  +      L D        + IMLVGNK DL 
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV--GKVQIPIMLVGNKKDLH 124
Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
             R +S EEG+  A+     FLE+SA+  Q   + F
Sbjct: 125 MERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 160

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +DG+P+ L +WDTAGQE
Sbjct: 23  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 81
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
            +  +    Y      L+ + +    +F ++ + W  + R H  PN  I+LVG K DL  
Sbjct: 82  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 140
Query: 126 RR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
            +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 141 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 188

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D +I   +  + V IDG    L I DTAGQE + ++   Y R 
Sbjct: 22  KSALTIQLIQNHFVDEYDPSIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 80
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 81  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 139
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 140 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 172

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +DG+P+ L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
            +  +    Y      L+ + +    +F ++ + W  + R H  PN  I+LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 126 RR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
            +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +DG+P+ L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
            +  +    Y      L+ + +    +F ++ + W  + R H  PN  I+LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 126 RR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
            +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +DG+P+ L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
            +  +    Y      L+ + +    +F ++ + W  + R H  PN  I+LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 126 RR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
            +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +DG+P+ L +WDTAGQE
Sbjct: 14  IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 72
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
            +  +    Y      L+ + +    +F ++ + W  + R H  PN  I+LVG K DL  
Sbjct: 73  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 131
Query: 126 RR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
            +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 132 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 179

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +DG+P+ L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
            +  +    Y      L+ + +    +F ++ + W  + R H  PN  I+LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 126 RR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
            +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTAGQE + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGN+CDLA  R V   + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 81/166 (48%), Gaps = 14/166 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+ F+  +F  V+  T+   + A  + +DG+ ++L +WDTAGQE 
Sbjct: 7   KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 65
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR 127
           +       Y      L+ + I   ++  ++        +H  PN+ I+LVGNK DL +  
Sbjct: 66  YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 128 AVSKE------------EGEQFAKENGLL-FLEASARTAQNVEEAF 160
             ++E            EG   A   G   ++E SA+T   V E F
Sbjct: 126 HTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D +I   +  + V IDG    L I DTAGQE + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPSIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           K+ L +Q     F   +D TI   +  + V IDG    L I DTAGQE + ++   Y R 
Sbjct: 16  KNALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F    D TI   +  + V IDG    L I DTAGQE + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEFDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DT GQE + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTTGQEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 84.7 bits (208), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DT GQE + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTGGQEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 84.7 bits (208), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTAG+E + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGKEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 76/143 (53%), Gaps = 3/143 (2%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTAGQE + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAF 160
           A+  G+ ++E SA+T Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTAG E + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 84/166 (50%), Gaps = 14/166 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+  +  +F  V+  T+   + A  + +DG+ ++L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 65
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-- 125
           +  +    Y      L+ + I   ++  ++        +H  PN+ I+LVGNK DL +  
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 126 --RRAVSK--------EEGEQFAKENGLL-FLEASARTAQNVEEAF 160
             RR ++K        EEG   A   G   ++E SA+T   V E F
Sbjct: 126 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 84/166 (50%), Gaps = 14/166 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+  +  +F  V+  T+   + A  + +DG+ ++L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 65
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-- 125
           +  +    Y      L+ + I   ++  ++        +H  PN+ I+LVGNK DL +  
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 126 --RRAVSK--------EEGEQFAKENGLL-FLEASARTAQNVEEAF 160
             RR ++K        EEG   A   G   ++E SA+T   V E F
Sbjct: 126 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 84/166 (50%), Gaps = 14/166 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+  +  +F  V+  T+   + A  + +DG+ ++L +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 63
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-- 125
           +  +    Y      L+ + I   ++  ++        +H  PN+ I+LVGNK DL +  
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 123
Query: 126 --RRAVSK--------EEGEQFAKENGLL-FLEASARTAQNVEEAF 160
             RR ++K        EEG   A   G   ++E SA+T   V E F
Sbjct: 124 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 82/156 (52%), Gaps = 6/156 (3%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K  I+G   VGKS L +QF + +F    D TI   F  +++T++G+   LQ+ DTAGQ+ 
Sbjct: 6   KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 64
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSW---LEDARQHANPNMSIMLVGNKCDLA 124
           +    ++Y     G +LVY +T  ++F  +      L D        + IMLVGNK DL 
Sbjct: 65  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV--GKVQIPIMLVGNKKDLH 122
Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
             R +S EEG+  A+     FLE+SA+  Q   + F
Sbjct: 123 MERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 158

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 84/166 (50%), Gaps = 14/166 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+  +  +F  V+  T+   + A  + +DG+ ++L +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 63
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-- 125
           +  +    Y      L+ + I   ++  ++        +H  PN+ I+LVGNK DL +  
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 123
Query: 126 --RRAVSK--------EEGEQFAKENGLL-FLEASARTAQNVEEAF 160
             RR ++K        EEG   A   G   ++E SA+T   V E F
Sbjct: 124 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 84.0 bits (206), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 84/166 (50%), Gaps = 14/166 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+  +  +F  V+  T+   + A  + +DG+ ++L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 65
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-- 125
           +  +    Y      L+ + I   ++  ++        +H  PN+ I+LVGNK DL +  
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 126 --RRAVSK--------EEGEQFAKENGLL-FLEASARTAQNVEEAF 160
             RR ++K        EEG   A   G   ++E SA+T   V E F
Sbjct: 126 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 84.0 bits (206), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTAGQE   ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEASAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTAG E + ++   Y R 
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRT 79
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 80  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 138
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 171

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 83/166 (50%), Gaps = 14/166 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+  +  +F  V+  T+   + A  + +DG+ ++L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIAD-IEVDGKQVELALWDTAGQED 65
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-- 125
           +  +    Y      L+ + I   ++  ++        +H  PN+ I+LVGNK DL    
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDE 125
Query: 126 --RRAVSKEEGEQFAKENG---------LLFLEASARTAQNVEEAF 160
             RR ++K + E    E G           +LE SA+T + V E F
Sbjct: 126 HTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 171

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 83.2 bits (204), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTAG E + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGVEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 83.2 bits (204), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T       +  T+   + A  V +DG+P+ L +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 89
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
            +  +    Y      L+ + +    +F ++ + W  + R H  PN  I+LVG K DL  
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 148
Query: 126 RR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
            +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTAG E + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTAG E + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGGEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 88/178 (49%), Gaps = 18/178 (10%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVT--IDGRPIKLQIWDTAGQ 65
           K +++GD G GK+ LL+ F D  F   +  T+   F   MV   + G+P+ L IWDTAGQ
Sbjct: 36  KVVLVGDGGCGKTSLLMVFADGAFPESYTPTV---FERYMVNLQVKGKPVHLHIWDTAGQ 92
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125
           + +  +   +Y  A+  LL +D+T   +F+++ +       H    + I++VG K DL  
Sbjct: 93  DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRK 152
Query: 126 RRA------------VSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKILQN 170
            ++            V+   G++ A+  G + +LE SAR   NV   F + A   L +
Sbjct: 153 DKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSS 210

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTAG E + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETXLLDILDTAGGEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTAG E + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGIEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDLA  R V   + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +DG+P+ L +WDTAG E
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGLE 89
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
            +  +    Y      L+ + +    +F ++ + W  + R H  PN  I+LVG K DL  
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 148
Query: 126 RR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
            +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 79/144 (54%), Gaps = 3/144 (2%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +QF  K F P +D TI   +  +   ID +   L + DTAGQE F ++   Y R 
Sbjct: 31  KSALTIQFFQKIFVPEYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 79  AAGALLVYDITRRETFNHLSSWLE-DARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L+VY +T + +F H+  + +   R     +  ++LV NK DL H R V++++G++ 
Sbjct: 90  GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 138 AKENGLLFLEASARTAQ-NVEEAF 160
           A +  + ++E SA+    NV++ F
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTF 173

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +DG+P+ L +WDTAG E
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGLE 65
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
            +  +    Y      L+ + +    +F ++ + W  + R H  PN  I+LVG K DL  
Sbjct: 66  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 124
Query: 126 RR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
            +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 125 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 172

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +DG+P+ L +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGLE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
            +  +    Y      L+ + +    +F ++ + W  + R H  PN  I+LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 126 RR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
            +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +DG+P+ L +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGLE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
            +  +    Y      L+ + +    +F ++ + W  + R H  PN  I+LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 126 RR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
            +             ++  +G   AKE G + +LE SA T + ++  F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 85/167 (50%), Gaps = 16/167 (9%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++GD  VGK+ L++ +T   + P   +    +  + +V++DGRP++LQ+ DTAGQ+ 
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNGY-PTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDE 80
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKCDL--- 123
           F  +    Y      LL + +    +F ++S  W+ + R H  P   I+LVG + DL   
Sbjct: 81  FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLRED 139
Query: 124 ---------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
                       + V +E  +  A+E     ++E SA T +N++E F
Sbjct: 140 VKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 87/176 (49%), Gaps = 16/176 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +DG+P+ L +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 63
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
            +  +    Y      L+ + +    +F ++ + W  + R H  P+  I+LVG K DL  
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLRD 122
Query: 126 RR------------AVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKIL 168
            +             ++  +G   A+E G + +LE SA T + ++  F +    +L
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 178

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 79/144 (54%), Gaps = 3/144 (2%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +QF  K F P +D TI   +  +   ID +   L + DTAGQE F ++   Y R 
Sbjct: 26  KSALTIQFFQKIFVPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 84
Query: 79  AAGALLVYDITRRETFNHLSSWLE-DARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L+VY +T + +F H+  + +   R     +  ++LV NK DL H R V++++G++ 
Sbjct: 85  GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 144
Query: 138 AKENGLLFLEASARTAQ-NVEEAF 160
           A +  + ++E SA+    NV++ F
Sbjct: 145 ATKYNIPYIETSAKDPPLNVDKTF 168

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 87/176 (49%), Gaps = 16/176 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +DG+P+ L +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 63
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
            +  +    Y      L+ + +    +F ++ + W  + R H  P+  I+LVG K DL  
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLRD 122
Query: 126 RR------------AVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKIL 168
            +             ++  +G   A+E G + +LE SA T + ++  F +    +L
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 178

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +DG+P+ L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
            +  +    Y      L+ + +    +F ++ + W  + R H  P+  I+LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLRD 121
Query: 126 RR------------AVSKEEGEQFAKENG-LLFLEASARTAQNVEEAF 160
            +             ++  +G   A+E G + +LE SA T + ++  F
Sbjct: 122 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 169

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 77/150 (51%), Gaps = 3/150 (2%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTAG E + ++   Y R 
Sbjct: 34  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRT 92
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDL   R V  ++ +  
Sbjct: 93  GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP-SRTVDTKQAQDL 151
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           A+  G+ F+E SA+T Q V++AF     +I
Sbjct: 152 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 181

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 80/166 (48%), Gaps = 14/166 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+  +  +F  V+  T+   + A  + +DG+ ++L +WDTAG E 
Sbjct: 10  KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGLED 68
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL---A 124
           +  +    Y      L+ + I   ++  ++        +H  PN+ I+LVGNK DL    
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 128
Query: 125 HRR---------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
           H R          V  EEG   A   G   ++E SA+T   V E F
Sbjct: 129 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +D +P+ L +WDTAGQE
Sbjct: 10  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDSKPVNLGLWDTAGQE 68
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
            +  +    Y      L+ + +    ++ ++ + W  + R H  P+  I+LVG K DL  
Sbjct: 69  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHC-PSTPIILVGTKLDLRD 127
Query: 126 RR------------AVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
            +             ++  +G   AKE + + +LE SA T + ++  F
Sbjct: 128 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 175

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +D +P+ L +WDTAGQE
Sbjct: 11  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDSKPVNLGLWDTAGQE 69
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
            +  +    Y      L+ + +    ++ ++ + W  + R H  P+  I+LVG K DL  
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHC-PSTPIILVGTKLDLRD 128
Query: 126 RR------------AVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
            +             ++  +G   AKE + + +LE SA T + ++  F
Sbjct: 129 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 176

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 78/153 (50%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F    D TI   +  + V IDG    L I DTAGQE + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNK DLA  R V   + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 80.1 bits (196), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 84/187 (44%), Gaps = 35/187 (18%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +DG+P+ L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 64
Query: 67  SFRSITRSYYRGAAGALLVYDITRR-------ETF-------------NHLSSWLEDARQ 106
            +  +    Y    G     DIT R       + F             N  + W  + R 
Sbjct: 65  DYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRH 124
Query: 107 HANPNMSIMLVGNKCDLAHRR------------AVSKEEGEQFAKENGLL-FLEASARTA 153
           H  PN  I+LVG K DL   +             ++  +G   AKE G + +LE SA T 
Sbjct: 125 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 183
Query: 154 QNVEEAF 160
           + ++  F
Sbjct: 184 RGLKTVF 190

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 86/177 (48%), Gaps = 16/177 (9%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++GD   GK+CLL+ F+   F  V+  T+   + A  + +DG+ ++L +WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 85
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKCDL--- 123
           +  +    Y      L+ + +   ++  ++   W+ + + H  PN+ I+LV NK DL   
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK-HFCPNVPIILVANKKDLRSD 144
Query: 124 AHRR---------AVSKEEGEQFA-KENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
            H R          V  ++G   A +     +LE SA+T + V E F       LQ 
Sbjct: 145 EHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQK 201

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A  V +D +P+ L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDSKPVNLGLWDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
            +  +    Y      L+ + +    ++ ++ + W  + R H  P+  I+LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHC-PSTPIILVGTKLDLRD 121
Query: 126 RR------------AVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
            +             ++  +G   AKE + + +LE SA T + ++  F
Sbjct: 122 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 169

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 77/150 (51%), Gaps = 3/150 (2%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTAGQE + ++   Y R 
Sbjct: 17  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNK DL   R V  ++ +  
Sbjct: 76  GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLP-SRTVDTKQAQDL 134
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           A+  G+ F+E SA+T Q V++AF     +I
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 77/150 (51%), Gaps = 3/150 (2%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTAGQE + ++   Y R 
Sbjct: 17  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNK DL   R V  ++ +  
Sbjct: 76  GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLP-SRTVDTKQAQDL 134
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           A+  G+ F+E SA+T Q V++AF     +I
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 78/153 (50%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTA QE + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNK DLA  R V   + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 78/153 (50%), Gaps = 3/153 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + V IDG    L I DTA QE + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L V+ I   ++F  +  + E   R   + ++ ++LVGNK DLA  R V   + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 84/158 (53%), Gaps = 4/158 (2%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           L++ +++GD GVGK+ L   F  K+ + +H+  +G +   R +T+DG    L + DT   
Sbjct: 4   LYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDTWEA 62
Query: 66  ESF-RSITR-SYYRGAAGALLVYDITRRETFNHLSSW-LEDARQHANPNMSIMLVGNKCD 122
           E   +S ++ S  +G +  ++VY I  R +F   S   ++  R H   ++ I+LVGNK D
Sbjct: 63  EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKAD 122
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
           LA  R VS EEG   A      F+E SA    NV E F
Sbjct: 123 LARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 78/144 (54%), Gaps = 3/144 (2%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +QF  K F   +D TI   +  +   ID +   L + DTAGQE F ++   Y R 
Sbjct: 31  KSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 79  AAGALLVYDITRRETFNHLSSWLE-DARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L+VY +T + +F H+  + +   R     +  ++LV NK DL H R V++++G++ 
Sbjct: 90  GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 138 AKENGLLFLEASARTAQ-NVEEAF 160
           A +  + ++E SA+    NV++ F
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTF 173

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 78/144 (54%), Gaps = 3/144 (2%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +QF  K F   +D TI   +  +   ID +   L + DTAGQE F ++   Y R 
Sbjct: 31  KSALTIQFFQKIFVDEYDPTIEDSY-RKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 79  AAGALLVYDITRRETFNHLSSWLE-DARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G L+VY +T + +F H+  + +   R     +  ++LV NK DL H R V++++G++ 
Sbjct: 90  GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 138 AKENGLLFLEASARTAQ-NVEEAF 160
           A +  + ++E SA+    NV++ F
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTF 173

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 76/156 (48%), Gaps = 3/156 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           ++  + G  GVGKS L+L+F    F+  +  T+   +  ++++ D     LQI DT G  
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSH 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLA 124
            F ++ R         +LVY IT R++   L    E   +      ++ IMLVGNKCD +
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122
Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
             R V   E E  A+     F+E SA+   NV+E F
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELF 158

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 86/175 (49%), Gaps = 9/175 (5%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDK--RFQPVHDLTIGVEFGARMVTIDGRPIKLQIW--DTA 63
           K  ++G+  VGKS L+  FT K  +F   + +T GVE     VTI    + ++++  DTA
Sbjct: 22  KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLE---DARQHANPNMSIMLVGNK 120
           G + ++     Y+ G   A+LV+D++  E+F    +W E    AR      +  +LV NK
Sbjct: 82  GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANK 141
Query: 121 CDL-AHRRAVSKEEGEQFAKENGLLFLEASARTA-QNVEEAFIKTAAKILQNIQE 173
            DL   R  V  +  + +A  N L F + SA    ++ +  F+  A    +N ++
Sbjct: 142 TDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNYED 196

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 83/167 (49%), Gaps = 4/167 (2%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLLL F+       +  T+   F + ++        L +WDTAGQE
Sbjct: 24  LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQE 82
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            +  +    Y  +   LL + +  R +F+++S+  E   +H       +LVG K DL   
Sbjct: 83  EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKD 142
Query: 127 RA--VSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKILQN 170
            +  V+K+EG+   ++ G + ++EAS+     + E F K+   I  N
Sbjct: 143 GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN 189

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 83/167 (49%), Gaps = 4/167 (2%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLLL F+       +  T+   F + ++        L +WDTAGQE
Sbjct: 23  LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQE 81
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            +  +    Y  +   LL + +  R +F+++S+  E   +H       +LVG K DL   
Sbjct: 82  EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKD 141
Query: 127 RA--VSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKILQN 170
            +  V+K+EG+   ++ G + ++EAS+     + E F K+   I  N
Sbjct: 142 GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN 188

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 89/177 (50%), Gaps = 16/177 (9%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           + K +++GD  VGK+CLL+ + +  F   +  T+   + A  VT+ G+   L ++DTAGQ
Sbjct: 18  MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQ 76
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL- 123
           E +  +    Y      L+ + +    +F ++   W+ + +++A PN+  +L+G + DL 
Sbjct: 77  EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLR 135
Query: 124 -----------AHRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKIL 168
                         + +  E+G++ AKE G   ++E SA T + ++  F +    IL
Sbjct: 136 DDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 192

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/143 (34%), Positives = 74/143 (51%), Gaps = 2/143 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +QF    F   +D TI  +F  + + +D  P  L+I DTAG E F S+   Y + 
Sbjct: 16  KSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 79  AAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
             G +LVY +  +++F  +    +   R      + ++LVGNK DL   R VS  EG   
Sbjct: 75  GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRAL 134
Query: 138 AKENGLLFLEASARTAQNVEEAF 160
           A+E G  F+E SA++   V+E F
Sbjct: 135 AEEWGCPFMETSAKSKTMVDELF 157

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 16/167 (9%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+  +  +F  V+  T+   + A  V +DGR ++L +WDTAGQE 
Sbjct: 12  KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVAD-VEVDGRRVELALWDTAGQED 70
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH- 125
           +  +    Y  +   L+ + I   ++  ++   W+ +   H    + I+LVG K DL + 
Sbjct: 71  YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVL-HFCQGVPIILVGCKVDLRND 129
Query: 126 -----------RRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
                      ++ V+ +EG+  A + G   + E SA+T   V E F
Sbjct: 130 PQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVF 176

>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In Complex With Gdp Length = 187

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 79/143 (55%), Gaps = 5/143 (3%)
Query: 11  IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS 70
           I+G  G GKS L ++F  KRF   +D  +   + +   T+D +P+ L++ DTA  ++ R+
Sbjct: 26  ILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEE-TVDHQPVHLRVMDTADLDTPRN 84
Query: 71  ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP---NMSIMLVGNKCDLAHRR 127
             R Y   A   L+VY +  R++F+  SS+LE    HA     ++  +L+GNK D+A  R
Sbjct: 85  CER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYR 143
Query: 128 AVSKEEGEQFAKENGLLFLEASA 150
            V+K EG   A   G LF E SA
Sbjct: 144 QVTKAEGVALAGRFGCLFFEVSA 166

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F   +  T+   + A  V I G P  L ++DTAGQE
Sbjct: 4   IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ +   H  P    +LVG + DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F   +  T+   + A  V I G P  L ++DTAGQE
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 66
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ +   H  P    +LVG + DL  
Sbjct: 67  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 125
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 126 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 173

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F   +  T+   + A  V I G P  L ++DTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 64
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ +   H  P    +LVG + DL  
Sbjct: 65  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 123
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 124 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 171

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F   +  T+   + A  V I G P  L ++DTAGQE
Sbjct: 14  IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 72
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ +   H  P    +LVG + DL  
Sbjct: 73  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 131
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 132 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 179

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F   +  T+   + A  V I G P  L ++DTAGQE
Sbjct: 11  IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 69
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ +   H  P    +LVG + DL  
Sbjct: 70  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 128
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 176

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F   +  T+   + A  V I G P  L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ +   H  P    +LVG + DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 70.1 bits (170), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F   +  T+   + A  V I G P  L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVXIGGEPYTLGLFDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ +   H  P    +LVG + DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 70.1 bits (170), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F   +  T+   + A  V I G P  L ++DTAGQE
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 69
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ +   H  P    +LVG + DL  
Sbjct: 70  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 128
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 176

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 70.1 bits (170), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F   +  T+   + A  V I G P  L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ +   H  P    +LVG + DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F   +  T+   + A  V I G P  L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ +   H  P    +LVG + DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F   +  T+   + A  V I G P  L ++DTAGQE
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 65
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ +   H  P    +LVG + DL  
Sbjct: 66  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 124
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 125 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 172

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F   +  T+   + A  V I G P  L ++DTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 63
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ +   H  P    +LVG + DL  
Sbjct: 64  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 122
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 123 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 170

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F   +  T+   + A  V I G P  L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ +   H  P    +LVG + DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F   +  T+   + A  V I G P  L ++DTAGQE
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 65
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ +   H  P    +LVG + DL  
Sbjct: 66  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 124
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 125 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 172

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F   +  T+   + A  V I G P  L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ +   H  P    +LVG + DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F   +  T+   + A  V I G P  L ++DTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 64
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ +   H  P    +LVG + DL  
Sbjct: 65  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 123
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 124 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 171

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F   +  T+   + A  V I G P  L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ +   H  P    +LVG + DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVF 169

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F   +  T+   + A  V I G P  L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ +   H  P    +LVG + DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVF 169

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F P   +    +  A  V I G P  L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKF-PSEYVPAVFDNYAVTVMIGGEPYTLGLFDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ +   H  P    +LVG + DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 79/161 (49%), Gaps = 14/161 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++GD+  GK+ LL  F    F   +  T+   + A    ID + I+L +WDT+G   
Sbjct: 30  KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF-EIDTQRIELSLWDTSGSPY 88
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL---- 123
           + ++    Y  +   L+ +DI+R ET + +    +   Q   PN  ++LVG K DL    
Sbjct: 89  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 148
Query: 124 -------AHRR-AVSKEEGEQFAKENG-LLFLEASARTAQN 155
                   HR+  VS ++G   AK+ G   ++E SA  ++N
Sbjct: 149 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 189

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 79/161 (49%), Gaps = 14/161 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++GD+  GK+ LL  F    F   +  T+   + A    ID + I+L +WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF-EIDTQRIELSLWDTSGSPY 67
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL---- 123
           + ++    Y  +   L+ +DI+R ET + +    +   Q   PN  ++LVG K DL    
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 127
Query: 124 -------AHRR-AVSKEEGEQFAKENG-LLFLEASARTAQN 155
                   HR+  VS ++G   AK+ G   ++E SA  ++N
Sbjct: 128 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 168

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 79/161 (49%), Gaps = 14/161 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++GD+  GK+ LL  F    F   +  T+   + A    ID + I+L +WDT+G   
Sbjct: 25  KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF-EIDTQRIELSLWDTSGSPY 83
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL---- 123
           + ++    Y  +   L+ +DI+R ET + +    +   Q   PN  ++LVG K DL    
Sbjct: 84  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 143
Query: 124 -------AHRR-AVSKEEGEQFAKENG-LLFLEASARTAQN 155
                   HR+  VS ++G   AK+ G   ++E SA  ++N
Sbjct: 144 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 184

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F   +  T+   + A  V I G P  L + DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLRDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ +   H  P    +LVG + DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +    +  T+   + A  V I G P  L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ +   H  P    +LVG + DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F   +  T+   + A  V I G P  L ++DTAG E
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGLE 66
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ +   H  P    +LVG + DL  
Sbjct: 67  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 125
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 126 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 173

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 88/177 (49%), Gaps = 16/177 (9%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++GD   GK+ +L       +   +  T+   + A + T + R ++L +WDT+G   
Sbjct: 12  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQR-VELSLWDTSGSPY 70
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNH-LSSWLEDARQHANPNMSIMLVGNKCD---- 122
           + ++    Y  +   LL +DI+R ET +  L  W  +   +  P+  ++L+G K D    
Sbjct: 71  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTD 129
Query: 123 ------LAHRR--AVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKILQN 170
                 L+H++   +S E+G   AK+ G  ++LE SA T++    +  +TA+ +  N
Sbjct: 130 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLN 186

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 67.0 bits (162), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 88/177 (49%), Gaps = 16/177 (9%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++GD   GK+ +L       +   +  T+   + A + T + R ++L +WDT+G   
Sbjct: 29  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQR-VELSLWDTSGSPY 87
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNH-LSSWLEDARQHANPNMSIMLVGNKCD---- 122
           + ++    Y  +   LL +DI+R ET +  L  W  +   +  P+  ++L+G K D    
Sbjct: 88  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTD 146
Query: 123 ------LAHRR--AVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKILQN 170
                 L+H++   +S E+G   AK+ G  ++LE SA T++    +  +TA+ +  N
Sbjct: 147 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLN 203

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F   +  T+   + A  V I G P  L ++DTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGLE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ +   H  P    +LVG + DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 88/177 (49%), Gaps = 16/177 (9%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++GD   GK+ +L       +   +  T+   + A + T + R ++L +WDT+G   
Sbjct: 13  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQR-VELSLWDTSGSPY 71
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNH-LSSWLEDARQHANPNMSIMLVGNKCD---- 122
           + ++    Y  +   LL +DI+R ET +  L  W  +   +  P+  ++L+G K D    
Sbjct: 72  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTD 130
Query: 123 ------LAHRR--AVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKILQN 170
                 L+H++   +S E+G   AK+ G  ++LE SA T++    +  +TA+ +  N
Sbjct: 131 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLN 187

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 74/159 (46%), Gaps = 2/159 (1%)
Query: 4   DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTA 63
           D +FK +++G++GVGKS L   F   +    H+     +   R + +D   + L ++D  
Sbjct: 21  DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIW 80
Query: 64  GQESFRSITRSYYRGAAGA-LLVYDITRRETFNHLSSWLEDARQ-HANPNMSIMLVGNKC 121
            Q       R +      A L+V+ +T R +F+ +   L   R    + ++ ++LVGNK 
Sbjct: 81  EQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKS 140
Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
           DLA  R VS EEG   A       +E SA    N  E F
Sbjct: 141 DLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 179

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 2/159 (1%)
Query: 4   DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTA 63
           D +FK +++G++GVGKS L   F   +    H++    +   R + +D   + L ++D  
Sbjct: 10  DGVFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIW 69
Query: 64  GQESFRSITRSYYRGAAGA-LLVYDITRRETFNHLSSWLEDARQ-HANPNMSIMLVGNKC 121
            Q       + +      A L+V+ +T R +F+ +   L   R    + ++ ++LVGNK 
Sbjct: 70  EQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKS 129
Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
           DLA  R VS EEG   A       +E SA    N  E F
Sbjct: 130 DLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 168

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 79/172 (45%), Gaps = 24/172 (13%)
Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL------TIGVEFGARMVTIDGRP 54
           M+Y   ++ ++IG+ GVGKS L        F  VHD        +G +   R + +DG  
Sbjct: 4   MTY---YRVVLIGEQGVGKSTLA-----NIFAGVHDSMDSDXEVLGEDTYERTLMVDGES 55
Query: 55  ---IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSW---LEDARQHA 108
              I L +W+  G+  +  +     +     L+VY IT R +F   S     L  ARQ  
Sbjct: 56  ATIILLDMWENKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-- 111
Query: 109 NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
             ++ I+LVGNK DL   R VS  EG   A      F+E SA    NV+E F
Sbjct: 112 TEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELF 163

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 79/172 (45%), Gaps = 24/172 (13%)
Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL------TIGVEFGARMVTIDGRP 54
           M+Y   ++ ++IG+ GVGKS L        F  VHD        +G +   R + +DG  
Sbjct: 4   MTY---YRVVLIGEQGVGKSTLA-----NIFAGVHDSMDSDXEVLGEDTYERTLMVDGES 55
Query: 55  ---IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSW---LEDARQHA 108
              I L +W+  G+  +  +     +     L+VY IT R +F   S     L  ARQ  
Sbjct: 56  ATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-- 111
Query: 109 NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
             ++ I+LVGNK DL   R VS  EG   A      F+E SA    NV+E F
Sbjct: 112 TEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELF 163

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 76/166 (45%), Gaps = 21/166 (12%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL------TIGVEFGARMVTIDGRP---IKL 57
           ++ ++IG+ GVGKS L        F  VHD        +G +   R + +DG     I L
Sbjct: 38  YRVVLIGEQGVGKSTLA-----NIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILL 92
Query: 58  QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSW---LEDARQHANPNMSI 114
            +W+  G+  +  +     +     L+VY IT R +F   S     L  ARQ    ++ I
Sbjct: 93  DMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ--TEDIPI 148
Query: 115 MLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
           +LVGNK DL   R VS  EG   A      F+E SA    NV+E F
Sbjct: 149 ILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF 194

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 63.5 bits (153), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 74/157 (47%), Gaps = 2/157 (1%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           +FK +++G++GVGKS L   F   +    H++    +   R + +D   + L ++D   Q
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61
Query: 66  ESFRSITRSYYRGAAGA-LLVYDITRRETFNHLSSWLEDARQ-HANPNMSIMLVGNKCDL 123
                  + +      A L+V+ +T R +F+ +   L   R    + ++ ++LVGNK DL
Sbjct: 62  GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL 121
Query: 124 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
           A  R VS EEG   A       +E SA    N  E F
Sbjct: 122 ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 158

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 76/166 (45%), Gaps = 21/166 (12%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL------TIGVEFGARMVTIDGRP---IKL 57
           ++ ++IG+ GVGKS L        F  VHD        +G +   R + +DG     I L
Sbjct: 7   YRVVLIGEQGVGKSTLA-----NIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILL 61
Query: 58  QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSW---LEDARQHANPNMSI 114
            +W+  G+  +  +     +     L+VY IT R +F   S     L  ARQ    ++ I
Sbjct: 62  DMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ--TEDIPI 117
Query: 115 MLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
           +LVGNK DL   R VS  EG   A      F+E SA    NV+E F
Sbjct: 118 ILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF 163

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 71/144 (49%), Gaps = 4/144 (2%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L+L+F    F+  +  TI   +  ++++ D     LQI DT G   F ++ R     
Sbjct: 21  KSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 79  AAGALLVYDITRRETFNHLSSWLEDARQH--ANPNMSIMLVGNKCDLAHRRAVSKEEGEQ 136
               +LV+ +T +++   L    +   Q   +  ++ +MLVGNKCD   +R V   E + 
Sbjct: 80  GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCD-ETQREVDTREAQA 138
Query: 137 FAKENGLLFLEASARTAQNVEEAF 160
            A+E    F+E SA+   NV+E F
Sbjct: 139 VAQEWKCAFMETSAKMNYNVKELF 162

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 76/163 (46%), Gaps = 7/163 (4%)
Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MS + ++K +++G  GVGKS L   F      P  +   G  +  R + +DG    L ++
Sbjct: 2   MSDESVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTYD-RSIVVDGEEASLMVY 59
Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETF---NHLSSWLEDARQHANPNMSIMLV 117
           D   Q+  R +           ++VY +T + +F   + L   L  ARQ    ++ I+LV
Sbjct: 60  DIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ--TDDVPIILV 117
Query: 118 GNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
           GNK DL   R VS +EG   A      F+E SA    NV+  F
Sbjct: 118 GNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALF 160

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 7/163 (4%)
Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           +S + ++K +++G  GVGKS L   F      P  +   G  +  R + +DG    L ++
Sbjct: 2   VSDESVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTYD-RSIVVDGEEASLMVY 59
Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETF---NHLSSWLEDARQHANPNMSIMLV 117
           D   Q+  R +           ++VY +T + +F   + L   L  ARQ    ++ I+LV
Sbjct: 60  DIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ--TDDVPIILV 117
Query: 118 GNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
           GNK DL   R VS +EG   A      F+E SA    NV+  F
Sbjct: 118 GNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALF 160

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 73/158 (46%), Gaps = 7/158 (4%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           ++K +++G  GVGKS L   F      P  +   G  +  R + +DG    L ++D   Q
Sbjct: 2   VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTYD-RSIVVDGEEASLMVYDIWEQ 59
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETF---NHLSSWLEDARQHANPNMSIMLVGNKCD 122
           +  R +           ++VY +T + +F   + L   L  ARQ    ++ I+LVGNK D
Sbjct: 60  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ--TDDVPIILVGNKSD 117
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
           L   R VS +EG   A      F+E SA    NV+  F
Sbjct: 118 LVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALF 155

>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 12/121 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            + +++G    GK+ +L +F  +        TI    G  + T++ R  KL IWD  GQ+
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGEDVD-----TISPTLGFNIKTLEHRGFKLNIWDVGGQK 73
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFN----HLSSWLEDARQHANPNMSIMLVGNKCD 122
           S RS  R+Y+    G + V D   R+        L S L + R       ++++  NK D
Sbjct: 74  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERL---AGATLLIFANKQD 130
Query: 123 L 123
           L
Sbjct: 131 L 131

>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 12/121 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            + +++G    GK+ +L +F  +        TI    G  + T++ R  KL IWD  GQ+
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGEDVD-----TISPTLGFNIKTLEHRGFKLNIWDVGGQK 73
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFN----HLSSWLEDARQHANPNMSIMLVGNKCD 122
           S RS  R+Y+    G + V D   R+        L S L + R       ++++  NK D
Sbjct: 74  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERL---AGATLLIFANKQD 130
Query: 123 L 123
           L
Sbjct: 131 L 131

>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 12/121 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            + +++G    GK+ +L +F  +        TI    G  + T++ R  KL IWD  GQ+
Sbjct: 17  LRLLMLGLDNAGKTTILKKFNGEDID-----TISPTLGFNIKTLEHRGFKLNIWDVGGQK 71
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFN----HLSSWLEDARQHANPNMSIMLVGNKCD 122
           S RS  R+Y+    G + V D   R+        L S L + R       ++++  NK D
Sbjct: 72  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERL---AGATLLIFANKQD 128
Query: 123 L 123
           L
Sbjct: 129 L 129

>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 171

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Query: 8   KYIIIGDTGVGKSCLLLQF--TDKRFQPVHDLTIGVEFGARMVTIDG---RPIKLQIWDT 62
           K  I+G+TG GK+ LL Q   T K        T+G++     + I     R + L +WD 
Sbjct: 2   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITR-RETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           AG+E F S    +    A  L VYD+++ +   +    WL + +  A+ +  ++LVG   
Sbjct: 62  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSS-PVILVGTHL 120
Query: 122 DLAHRR 127
           D++  +
Sbjct: 121 DVSDEK 126

>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's Disease-associated Leucine-rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 184

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Query: 8   KYIIIGDTGVGKSCLLLQF--TDKRFQPVHDLTIGVEFGARMVTIDG---RPIKLQIWDT 62
           K  I+G+TG GK+ LL Q   T K        T+G++     + I     R + L +WD 
Sbjct: 4   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITR-RETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           AG+E F S    +    A  L VYD+++ +   +    WL + +  A+ +  ++LVG   
Sbjct: 64  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSS-PVILVGTHL 122
Query: 122 DLAHRR 127
           D++  +
Sbjct: 123 DVSDEK 128

>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 51/117 (43%), Gaps = 6/117 (5%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            + +I+G  G GK+ +L      R Q    +T     G  + T+  + +KL +WD  GQ 
Sbjct: 19  LRILILGLDGAGKTTILY-----RLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQT 73
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLV-GNKCD 122
           S R   R YY   A  + V D T ++  +  S  L    Q      + +LV  NK D
Sbjct: 74  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQD 130

>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With Unc119a Length = 169

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 12/122 (9%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           + + +++G    GK+ +L +F  +        TI    G  + T++ R  KL IWD  G 
Sbjct: 1   MLRLLMLGLDNAGKTTILKKFNGEDVD-----TISPTLGFNIKTLEHRGFKLNIWDVGGL 55
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFN----HLSSWLEDARQHANPNMSIMLVGNKC 121
           +S RS  R+Y+    G + V D   R+        L S L + R       ++++  NK 
Sbjct: 56  KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERL---AGATLLIFANKQ 112
Query: 122 DL 123
           DL
Sbjct: 113 DL 114

>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet) Length = 186

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 18 GKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYR 77
          GK+ +L +F  +        TI    G  + T++ R  KL IWD  GQ+S RS  R+Y+ 
Sbjct: 30 GKTTILKKFNGEDVD-----TISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFE 84
Query: 78 GAAGALLVYDITRRE 92
             G + V D   R+
Sbjct: 85 STDGLIWVVDSADRQ 99

>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 22/140 (15%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K II+G    GK+ +L QF+    + VH        G+ +  I     +  +WD  GQES
Sbjct: 23  KVIIVGLDNAGKTTILYQFSMN--EVVHT---SPTIGSNVEEIVINNTRFLMWDIGGQES 77
Query: 68  FRSITRSYYRGAAGALLVYD--------ITRRETFNHLSSWLEDARQHANPNMSIMLVGN 119
            RS   +YY      ++V D        +TR E +  L+   ED R+       +++  N
Sbjct: 78  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH--EDLRKAG-----LLIFAN 130
Query: 120 KCDLAHRRAVSKEEGEQFAK 139
           K D+  +  ++  E  QF K
Sbjct: 131 KQDV--KECMTVAEISQFLK 148

>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 22/140 (15%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K II+G    GK+ +L QF+    + VH        G+ +  I     +  +WD  GQES
Sbjct: 18  KVIIVGLDNAGKTTILYQFSMN--EVVHT---SPTIGSNVEEIVINNTRFLMWDIGGQES 72
Query: 68  FRSITRSYYRGAAGALLVYD--------ITRRETFNHLSSWLEDARQHANPNMSIMLVGN 119
            RS   +YY      ++V D        +TR E +  L+   ED R+       +++  N
Sbjct: 73  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH--EDLRKAG-----LLIFAN 125
Query: 120 KCDLAHRRAVSKEEGEQFAK 139
           K D+  +  ++  E  QF K
Sbjct: 126 KQDV--KECMTVAEISQFLK 143

>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 22/140 (15%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K II+G    GK+ +L QF+    + VH        G+ +  I     +  +WD  GQES
Sbjct: 24  KVIIVGLDNAGKTTILYQFSMN--EVVHT---SPTIGSNVEEIVINNTRFLMWDIGGQES 78
Query: 68  FRSITRSYYRGAAGALLVYD--------ITRRETFNHLSSWLEDARQHANPNMSIMLVGN 119
            RS   +YY      ++V D        +TR E +  L+   ED R+       +++  N
Sbjct: 79  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH--EDLRKAG-----LLIFAN 131
Query: 120 KCDLAHRRAVSKEEGEQFAK 139
           K D+  +  ++  E  QF K
Sbjct: 132 KQDV--KECMTVAEISQFLK 149

>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 22/140 (15%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K II+G    GK+ +L QF+    + VH        G+ +  I     +  +WD  GQES
Sbjct: 18  KVIIVGLDNAGKTTILYQFSMN--EVVHT---SPTIGSNVEEIVINNTRFLMWDIGGQES 72
Query: 68  FRSITRSYYRGAAGALLVYD--------ITRRETFNHLSSWLEDARQHANPNMSIMLVGN 119
            RS   +YY      ++V D        +TR E +  L+   ED R+       +++  N
Sbjct: 73  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH--EDLRKAG-----LLIFAN 125
Query: 120 KCDLAHRRAVSKEEGEQFAK 139
           K D+  +  ++  E  QF K
Sbjct: 126 KQDV--KECMTVAEISQFLK 143

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Query: 35  HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF 94
            D+   V F  R VT     IK  IWD  GQ  FRS+   Y RG    + + D   RE  
Sbjct: 49  EDMIPTVGFNMRKVTKGNVTIK--IWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKI 106
Query: 95  ----NHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125
               N L + L+  +    P   ++++GNK DL +
Sbjct: 107 EASRNELHNLLDKPQLQGIP---VLVLGNKRDLPN 138

>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 55/124 (44%), Gaps = 20/124 (16%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K II+G    GK+ +L QF     + VH        G+ +  I  +     +WD  GQES
Sbjct: 18  KVIIVGLDNAGKTTILYQFLMN--EVVHT---SPTIGSNVEEIVVKNTHFLMWDIGGQES 72
Query: 68  FRSITRSYYRGAAGALLVYD--------ITRRETFNHLSSWLEDARQHANPNMSIMLVGN 119
            RS   +YY      +LV D        IT+ E +  L+   ED R+ A     +++  N
Sbjct: 73  LRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAH--EDLRKAA-----VLIFAN 125
Query: 120 KCDL 123
           K D+
Sbjct: 126 KQDM 129

>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 55/126 (43%), Gaps = 6/126 (4%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            + +++G    GK+ +L +           +T     G  + T++ + I   +WD  GQ+
Sbjct: 30  MRILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVETVEYKNICFTVWDVGGQD 84
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLV-GNKCDLAH 125
             R + R Y++   G + V D   RE     +  L+   Q      +++LV  NK D+ +
Sbjct: 85  KIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPN 144
Query: 126 RRAVSK 131
              VS+
Sbjct: 145 AMPVSE 150

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 35  HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF 94
            D+   V F  R +T     IKL  WD  GQ  FRS+   Y RG +  + + D   +E  
Sbjct: 49  EDMIPTVGFNMRKITKGNVTIKL--WDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKI 106
Query: 95  ----NHLSSWLEDARQHANPNMSIMLVGNKCDLA 124
               N L + L+  +    P   ++++GNK DL 
Sbjct: 107 EASKNELHNLLDKPQLQGIP---VLVLGNKRDLP 137

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 7  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           + +++G  G GK+ +L      + +    +T     G  + T+  + I   +WD  GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLY-----KLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQD 72
Query: 67 SFRSITRSYYRGAAGALLVYDITRR 91
            RS+ R YYR   G + V D   R
Sbjct: 73 RIRSLWRHYYRNTEGVIFVIDSNDR 97

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 7  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           + +++G  G GK+ +L      + +    +T     G  + T+  + I   +WD  GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLY-----KLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQD 72
Query: 67 SFRSITRSYYRGAAGALLVYDITRR 91
            RS+ R YYR   G + V D   R
Sbjct: 73 RIRSLWRHYYRNTEGVIFVVDSNDR 97

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 20/126 (15%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            + +++G    GK+ +L +   K  Q V   T     G  + T+  + +K  +WD  GQ+
Sbjct: 323 MRILMLGLDAAGKTTILYKL--KLGQSV---TTIPTVGFNVETVTYKNVKFNVWDVGGQD 377
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS--------IMLVG 118
             R + R YY G  G + V D   R+        +++ARQ  +  ++        I++  
Sbjct: 378 KIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQELHRIINDREMRDAIILIFA 430
Query: 119 NKCDLA 124
           NK DL 
Sbjct: 431 NKQDLP 436

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 7  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           + +++G  G GK+ +L +    +   V  +T     G  + T+  + I   +WD  GQ+
Sbjct: 1  MRILMVGLDGAGKTTVLYKL---KLGEV--ITTIPTIGFNVETVQYKNISFTVWDVGGQD 55
Query: 67 SFRSITRSYYRGAAGALLVYDITRR 91
            RS+ R YYR   G + V D   R
Sbjct: 56 RIRSLWRHYYRNTEGVIFVVDSNDR 80

>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 6/120 (5%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            + +I+G  G GK+ +L      R Q    +T     G  + T+  + +K Q+WD  GQ 
Sbjct: 3   MRILILGLDGAGKTTILY-----RLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQT 57
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLV-GNKCDLAH 125
           S R   R YY      + V D   R+      S L    +      +I++V  NK D+  
Sbjct: 58  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 117

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 35  HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF 94
            D+   V F  R +T     IKL  WD  GQ  FRS+   Y RG +  + + D   +E  
Sbjct: 58  EDMIPTVGFNMRKITKGNVTIKL--WDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKI 115
Query: 95  ----NHLSSWLEDARQHANPNMSIMLVGNKCDLA 124
               N L + L+  +    P   ++++GNK DL 
Sbjct: 116 EASKNELHNLLDKPQLQGIP---VLVLGNKRDLP 146

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 20/126 (15%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            + +++G    GK+ +L +   K  Q V   T     G  + T+  + +K  +WD  GQ+
Sbjct: 13  MRILMLGLDAAGKTTILYKL--KLGQSV---TTIPTVGFNVETVTYKNVKFNVWDVGGQD 67
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS--------IMLVG 118
             R + R YY G  G + V D   R+        +++ARQ  +  ++        I++  
Sbjct: 68  KIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQELHRIINDREMRDAIILIFA 120
Query: 119 NKCDLA 124
           NK DL 
Sbjct: 121 NKQDLP 126

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 20/126 (15%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            + +++G    GK+ +L +   K  Q V   T     G  + T+  + +K  +WD  GQ+
Sbjct: 14  MRILMLGLDAAGKTTILYKL--KLGQSV---TTIPTVGFNVETVTYKNVKFNVWDVGGQD 68
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS--------IMLVG 118
             R + R YY G  G + V D   R+        +++ARQ  +  ++        I++  
Sbjct: 69  KIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQELHRIINDREMRDAIILIFA 121
Query: 119 NKCDLA 124
           NK DL 
Sbjct: 122 NKQDLP 127

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 20/126 (15%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            + +++G    GK+ +L +   K  Q V   T     G  + T+  + +K  +WD  GQ+
Sbjct: 1   MRILMLGLDAAGKTTILYKL--KLGQSV---TTIPTVGFNVETVTYKNVKFNVWDVGGQD 55
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS--------IMLVG 118
             R + R YY G  G + V D   R+        +++ARQ  +  ++        I++  
Sbjct: 56  KIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQELHRIINDREMRDAIILIFA 108
Query: 119 NKCDLA 124
           NK DL 
Sbjct: 109 NKQDLP 114

>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 15/90 (16%)
Query: 44  GARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED 103
           G  + T++ R I   +WD  GQ+  R + R YY    G + V D   RE        ++D
Sbjct: 50  GFNVETVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRER-------IDD 102
Query: 104 ARQHANPNMS--------IMLVGNKCDLAH 125
           AR+  +  ++        I++  NK DL +
Sbjct: 103 AREELHRMINEEELKDAIILVFANKQDLPN 132

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 20/126 (15%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            + +++G    GK+ +L +   K  Q V   T     G  + T+  + +K  +WD  GQ+
Sbjct: 1   MRILMLGLDAAGKTTILYKL--KLGQSV---TTIPTVGFNVETVTYKNVKFNVWDVGGQD 55
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS--------IMLVG 118
             R + R YY G  G + V D   R+        +++ARQ  +  ++        I++  
Sbjct: 56  KIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQELHRIINDREMRDAIILIFA 108
Query: 119 NKCDLA 124
           NK DL 
Sbjct: 109 NKQDLP 114

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 15/89 (16%)
Query: 44  GARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED 103
           G  + T+  + +K  +WD  GQ+  R + R YY G  G + V D   R+        +++
Sbjct: 33  GFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDR-------IDE 85
Query: 104 ARQHANPNMS--------IMLVGNKCDLA 124
           ARQ  +  ++        I++  NK DL 
Sbjct: 86  ARQELHRIINDREXRDAIILIFANKQDLP 114

>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 6/120 (5%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            + +++G    GK+ +L +           +T     G  + T++ + I   +WD  GQ+
Sbjct: 166 MRILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVETVEYKNISFTVWDVGGQD 220
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLV-GNKCDLAH 125
             R + R Y++   G + V D   RE  N     L           +++LV  NK DL +
Sbjct: 221 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 280

>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 6/120 (5%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            + +++G    GK+ +L      + +    +T     G  + T++ + I   +WD  GQ+
Sbjct: 17  MRILMVGLDAAGKTTILY-----KLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQD 71
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLV-GNKCDLAH 125
             R + R Y++   G + V D   RE  N     L           +++LV  NK DL +
Sbjct: 72  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 131

>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 6/120 (5%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            + +++G    GK+ +L +           +T     G  + T++ + I   +WD  GQ+
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVETVEYKNISFTVWDVGGQD 55
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLV-GNKCDLAH 125
             R + R Y++   G + V D   RE  N     L           +++LV  NK DL +
Sbjct: 56  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 115

>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 6/120 (5%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            + +++G    GK+ +L      + +    +T     G  + T++ + I   +WD  GQ+
Sbjct: 18  MRILMVGLDAAGKTTILY-----KLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQD 72
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLV-GNKCDLAH 125
             R + R Y++   G + V D   RE  N     L           +++LV  NK DL +
Sbjct: 73  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 132

>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 6/126 (4%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            + +++G    GK+ +L +           +T     G  + T++ + I   +WD  GQ+
Sbjct: 18  MRILMVGLDAAGKTSILYKLKLGEI-----VTTIPTIGFNVETVEYKNISFTVWDVGGQD 72
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLV-GNKCDLAH 125
             R + R YY+     + V D   R+        L           +I+LV  NK DL  
Sbjct: 73  KIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILLVFANKHDLPQ 132
Query: 126 RRAVSK 131
             ++S+
Sbjct: 133 AMSISE 138

>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/126 (21%), Positives = 57/126 (45%), Gaps = 6/126 (4%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            + +++G    GK+ +L      + +    +T     G  + T++ + I   +WD  GQ+
Sbjct: 18  MRILMVGLDAAGKTTILY-----KLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQD 72
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLV-GNKCDLAH 125
             R + + Y++   G + V D   RE    ++  L+          +++L+  NK DL +
Sbjct: 73  RIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPN 132
Query: 126 RRAVSK 131
             A+S+
Sbjct: 133 AMAISE 138

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	211
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	1e-123
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	1e-123
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	1e-122
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	1e-121
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	1e-120
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	1e-120
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	1e-119
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	1e-118
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	1e-117
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	1e-117
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	1e-116
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	1e-116
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	1e-115
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	1e-114
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	1e-113
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	1e-113
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	1e-113
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	1e-113
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	1e-113
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	1e-112
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	1e-112
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	1e-112
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	1e-111
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	1e-111
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	1e-111
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	1e-111
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	1e-111
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	1e-110
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	1e-109
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	1e-109
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	1e-108
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	1e-108
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	1e-108
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	1e-107
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	1e-107
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	1e-106
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	1e-106
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	1e-106
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	1e-106
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	1e-104
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	1e-101
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	1e-101
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	6e-97
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	2e-89
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	1e-88
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	2e-88
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	3e-86
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	8e-86
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	1e-84
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	4e-84
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	9e-84
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	2e-83
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	5e-82
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	2e-80
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	1e-79
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	8e-79
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	2e-78
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	1e-77
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	5e-77
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	2e-76
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	5e-76
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	2e-75
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	3e-75
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	7e-75
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	2e-73
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	1e-72
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	7e-72
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	3e-65
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	7e-63
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	2e-61
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	1e-52
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	4e-50
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	1e-47
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	8e-47
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	2e-45
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	6e-45
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	1e-43
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	2e-42
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	3e-42
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	3e-42
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	2e-41
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	2e-41
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	3e-40
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	2e-39
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	1e-27
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	1e-21
3llu_A	196	RAS-related GTP-binding protein C; structural geno	7e-16
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	8e-16
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	4e-12
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	7e-12
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	8e-12
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	1e-11
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	1e-11
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	2e-11
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	2e-11
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	2e-11
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	7e-11
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	8e-11
2ged_A	193	SR-beta, signal recognition particle receptor beta	4e-10
1nrj_B	218	SR-beta, signal recognition particle receptor beta	5e-10
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	7e-10
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	1e-09
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	1e-09
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	3e-09
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	3e-09
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	3e-08
2fh5_B	214	SR-beta, signal recognition particle receptor beta	2e-07
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	1e-04

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  344 bits (886), Expect = e-123
 Identities = 106/183 (57%), Positives = 140/183 (76%), Gaps = 2/183 (1%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           +YD+LFK+++IG+ G GKSCLL QF +K+F+   + TIGVEFG++++ + G+ +KLQIWD
Sbjct: 6   TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWD 65

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE FRS+TRSYYRGAAGALLVYDIT RET+N L++WL DAR  A+ N+ I+L GNK 
Sbjct: 66  TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKK 125

Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVND 181
           DL   R V+  E  +FA+EN L+FLE SA T +NVEEAF++ A KIL  I+ G LD   +
Sbjct: 126 DLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELD--PE 183

Query: 182 QSG 184
           + G
Sbjct: 184 RMG 186

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  344 bits (885), Expect = e-123
 Identities = 140/175 (80%), Positives = 154/175 (88%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
              YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMV IDG+ IKLQIWD
Sbjct: 17  RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWD 76

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQH++ NM IML+GNK 
Sbjct: 77  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKS 136

Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGAL 176
           DL  RR V +EEGE FA+E+GL+F+E SA+TA NVEEAFI TA +I + IQ+G  
Sbjct: 137 DLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGLF 191

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  343 bits (881), Expect = e-122
 Identities = 105/177 (59%), Positives = 133/177 (75%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           +  D+LFK+++IG  G GKSCLL QF + +F+   + TIGVEFG+R+V + G+ +KLQIW
Sbjct: 20  IWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIW 79

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
           DTAGQE FRS+TRSYYRGAAGALLVYDIT RET+N L++WL DAR  A+PN+ ++L GNK
Sbjct: 80  DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNK 139

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALD 177
            DL   R V+  E  +FA+EN L+FLE SA T +NVEEAF+K A  IL  I  G LD
Sbjct: 140 KDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGELD 196

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  342 bits (878), Expect = e-121
 Identities = 90/214 (42%), Positives = 129/214 (60%), Gaps = 6/214 (2%)

Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YD LFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + I+G+ IK QIWDT
Sbjct: 10  YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDT 69

Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE +R+IT +YYRGA GAL+VYDI++  ++ + + WL + R++A+ N+++ L+GNK D
Sbjct: 70  AGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSD 129

Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 182
           LAH RAV  EE + FA+EN LLF E SA  ++NV++AF +    I Q + +  +D  +  
Sbjct: 130 LAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGDSS 189

Query: 183 SGIKVGYGRGQGP------SGARDGTVSQRGGCC 210
           +                      +   +    CC
Sbjct: 190 ANGNANGASAPNGPTISLTPTPNENKKANGNNCC 223

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  338 bits (868), Expect = e-120
 Identities = 115/169 (68%), Positives = 138/169 (81%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           +Y Y+FKYIIIGD GVGKSCLL QFT+K+F      TIGVEFG R++ + G+ IKLQIWD
Sbjct: 11  NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWD 70

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE FR++TRSYYRGAAGAL+VYDITRR T+NHLSSWL DAR   NPN  I+L+GNK 
Sbjct: 71  TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKA 130

Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           DL  +R V+ EE +QFA+ENGLLFLEASA+T +NVE+AF++ A KI QN
Sbjct: 131 DLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQN 179

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  337 bits (866), Expect = e-120
 Identities = 90/209 (43%), Positives = 136/209 (65%), Gaps = 7/209 (3%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
            YDYLFK ++IG++GVGKSCLLL+F+D  +   +  TIGV+F  + V +DG+ +KLQIWD
Sbjct: 4   EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 63

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE FR+IT SYYRG+ G ++VYD+T +E+FN +  WL++  ++A   +  +LVGNKC
Sbjct: 64  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKC 123

Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVND 181
           DL  +R V  +  ++FA  N + FLE SA  + NVE+AF+  A +I +++ +  L+    
Sbjct: 124 DLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQ 183

Query: 182 QSGIKVGYGRGQGPSGARDGTVSQRGGCC 210
           +   K       G    +  +++  GGCC
Sbjct: 184 KKEDK-------GNVNLKGQSLTNTGGCC 205

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  336 bits (865), Expect = e-119
 Identities = 91/185 (49%), Positives = 132/185 (71%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
            YDYLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R + +DG+ IKLQIWD
Sbjct: 12  EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 71

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N++ +LVGNKC
Sbjct: 72  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 131

Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVND 181
           DL  ++ V     ++FA   G+ FLE SA+ A NVE++F+  AA+I + +  GA     +
Sbjct: 132 DLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAE 191

Query: 182 QSGIK 186
           +S +K
Sbjct: 192 KSNVK 196

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  333 bits (855), Expect = e-118
 Identities = 91/186 (48%), Positives = 118/186 (63%)

Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YDYLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +DG+ IK QIWDT
Sbjct: 2   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61

Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE +R IT +YYRGA GALLVYDI +  T+ ++  WL++ R HA+ N+ IMLVGNK D
Sbjct: 62  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 121

Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 182
           L H RAV  +E   FA++N L F+E SA  + NVEEAF     +I + + +  +      
Sbjct: 122 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAH 181

Query: 183 SGIKVG 188
                 
Sbjct: 182 DESPGN 187

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  330 bits (849), Expect = e-117
 Identities = 76/195 (38%), Positives = 112/195 (57%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
            +DY+FK +IIG++ VGK+  L ++ D  F P    T+G++F  + +  + + IKLQIWD
Sbjct: 4   MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWD 63

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAG E +R+IT +YYRGA G +L+YDIT  E+FN +  W    + ++  N  ++LVGNKC
Sbjct: 64  TAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKC 123

Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVND 181
           D+   R VS E G Q A   G  F EASA+   NV++ F +    I + + E    A   
Sbjct: 124 DMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTADPA 183

Query: 182 QSGIKVGYGRGQGPS 196
            +G K G       +
Sbjct: 184 VTGAKQGPQLTDQQA 198

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  329 bits (847), Expect = e-117
 Identities = 80/172 (46%), Positives = 110/172 (63%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
            Y+++FK ++IG++GVGK+ LL +FT   F      TIGVEF  R V +    +K QIWD
Sbjct: 21  DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWD 80

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAG E +R+IT +YYRGA GALLV+D+T+ +T+  +  WL++   HA   + +MLVGNK 
Sbjct: 81  TAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKS 140

Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 173
           DL+  R V  EE   FA+ NGLLFLE SA  + NVE AF     +I   + +
Sbjct: 141 DLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSK 192

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  328 bits (843), Expect = e-116
 Identities = 90/166 (54%), Positives = 114/166 (68%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
            YDYLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +DG+ IK QIWD
Sbjct: 25  EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 84

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAG E +R+IT +YYRGA GALLVYDI +  T+ ++  WL++ R HA+ N+ IMLVGNK 
Sbjct: 85  TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKS 144

Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           DL H RAV  +E   FA++NGL F+E SA  + NVE AF     +I
Sbjct: 145 DLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  328 bits (843), Expect = e-116
 Identities = 82/177 (46%), Positives = 117/177 (66%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
            YD+LFK ++IG+ GVGK+CL+ +FT   F P    TIGV+F  + V I+G  +KLQIWD
Sbjct: 22  DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWD 81

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE FRSIT+SYYR A   +L YDIT  E+F  L  WL +  Q+A+  +  +LVGNK 
Sbjct: 82  TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKI 141

Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDA 178
           DLA RR VS++  E+F++   + +LE SA+ + NVE+ F+  A +++   ++  L  
Sbjct: 142 DLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTLVN 198

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  326 bits (837), Expect = e-115
 Identities = 86/195 (44%), Positives = 122/195 (62%), Gaps = 1/195 (0%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           SYD + K ++IGD+GVGKSCLL++F + +F P    TIG++F  + V I+G+ +KLQ+WD
Sbjct: 16  SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWD 75

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE FR+IT +YYRGA G +LVYD+T   TF ++  W +   +HAN    ++LVGNK 
Sbjct: 76  TAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKS 135

Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVND 181
           D+   R V+ ++GE  AKE G+ F+E+SA+   NV E F   A  I + I    L  V +
Sbjct: 136 DM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNKLVGVGN 194

Query: 182 QSGIKVGYGRGQGPS 196
                +    G G S
Sbjct: 195 GKEGNISINSGSGNS 209

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  321 bits (825), Expect = e-114
 Identities = 82/177 (46%), Positives = 122/177 (68%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           +YDYLFK ++IGD+GVGK+C+L +F++  F      TIG++F  R + +DG+ IKLQIWD
Sbjct: 4   TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWD 63

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE FR+IT +YYRGA G +LVYDIT  ++F+++ +W+ +  +HA+ ++  M++GNKC
Sbjct: 64  TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKC 123

Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDA 178
           D+  +R VSKE GE+ A + G+ F+E SA+   NVE AF   A  I   + +     
Sbjct: 124 DVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKNWKAT 180

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  321 bits (825), Expect = e-113
 Identities = 70/172 (40%), Positives = 108/172 (62%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           ++DY+FK +IIG++ VGK+  L ++ D  F P    T+G++F  + V    + +KLQIWD
Sbjct: 19  NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWD 78

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE +R+IT +YYRGA G +L+YDIT  E+FN +  W    + ++  N  ++LVGNKC
Sbjct: 79  TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKC 138

Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 173
           D+   R V  E+G+  A++ G  F EASA+   +V +AF +    I   + +
Sbjct: 139 DMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSD 190

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  320 bits (822), Expect = e-113
 Identities = 87/170 (51%), Positives = 125/170 (73%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
            YDYLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R + +DG+ IKLQIWD
Sbjct: 29  EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 88

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N++ +LVGNKC
Sbjct: 89  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 148

Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNI 171
           DL  ++ V     ++FA   G+ FLE SA+ A NVE++F+  AA+I + +
Sbjct: 149 DLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 198

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  320 bits (822), Expect = e-113
 Identities = 77/174 (44%), Positives = 114/174 (65%), Gaps = 1/174 (0%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
            YD+LFK +++GD  VGK+C++ +F    F      TIGV+F  + + I G+ +KLQIWD
Sbjct: 25  QYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWD 84

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE FR+IT+SYYR A GA+L YDIT+R +F  +  W+ED R++A  N+  +L+GNK 
Sbjct: 85  TAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKS 144

Query: 122 DLAHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKILQNIQEG 174
           DL+  R VS  E +  A+   +L  +E SA+ + NVEEAF++ A +++      
Sbjct: 145 DLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGGP 198

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  319 bits (820), Expect = e-113
 Identities = 76/173 (43%), Positives = 121/173 (69%), Gaps = 1/173 (0%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIGVEFGARMVTIDGRPIKLQIW 60
            YD  FK +++GD+GVGK+CLL++F D  F     + T+G++F  +++ +DG  +KLQ+W
Sbjct: 6   FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMW 65

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
           DTAGQE FRS+T +YYR A   LL+YD+T + +F+++ +WL +  ++A  ++++ML+GNK
Sbjct: 66  DTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNK 125

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 173
            D AH R V +E+GE+ AKE GL F+E SA+T  NV+ AF   A ++ +   +
Sbjct: 126 VDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRSMK 178

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  319 bits (819), Expect = e-113
 Identities = 79/173 (45%), Positives = 110/173 (63%), Gaps = 1/173 (0%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
            YD+LFK +IIGD+GVGKS LLL+F D  F   +  TIGV+F  R V I+G  +KLQIWD
Sbjct: 5   DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWD 64

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE FR+IT +YYRG  G ++VYD+T  E+F ++  WL +  Q+   ++  +LVGNK 
Sbjct: 65  TAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKN 123

Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG 174
           D   R+ V  E+  +FA + G+   E SA+   NVEE F      +L+  ++ 
Sbjct: 124 DDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDN 176

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  318 bits (818), Expect = e-112
 Identities = 71/172 (41%), Positives = 105/172 (61%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
             DY+FK ++IG++ VGK+  L ++ D  F P    T+G++F  + V    + IKLQIWD
Sbjct: 18  GSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWD 77

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE +R+IT +YYRGA G LL+YDI  +E+F  +  W    + ++  N  ++LVGNKC
Sbjct: 78  TAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKC 137

Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 173
           DL   R V  E+G + A + G  F EASA+   NV++ F +    I + + E
Sbjct: 138 DLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNE 189

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  317 bits (814), Expect = e-112
 Identities = 76/171 (44%), Positives = 114/171 (66%), Gaps = 1/171 (0%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
             D+  + IIIG  GVGK+ L+ +FTD  F      T+GV+F  + V + G+ I+LQIWD
Sbjct: 22  PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWD 81

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE F SIT +YYR A G +LVYDIT++ETF+ L  W++   ++A+ +  ++LVGNK 
Sbjct: 82  TAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKL 141

Query: 122 DLAHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAKILQNI 171
           D    R +++++GE+FA++  G+ F EASA+   NV+E F+K    IL+ +
Sbjct: 142 DCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 192

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  316 bits (813), Expect = e-112
 Identities = 88/188 (46%), Positives = 119/188 (63%), Gaps = 4/188 (2%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
                 K +IIG++GVGKS LLL+FTD  F P    TIGV+F  + +++DG   KL IWD
Sbjct: 11  DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWD 70

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPN-MSIMLVGNK 120
           TAGQE FR++T SYYRGA G +LVYD+TRR+TF  L +WL +   +   N +  MLVGNK
Sbjct: 71  TAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNK 130

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
            D    R V + EG +FA+++ +LF+EASA+T   V+ AF +   KI+Q    G  ++ N
Sbjct: 131 IDK-ENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTP--GLWESEN 187

Query: 181 DQSGIKVG 188
             SG   G
Sbjct: 188 QNSGPSSG 195

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  315 bits (809), Expect = e-111
 Identities = 66/172 (38%), Positives = 106/172 (61%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           +     K +++GD G GKS L+L+F   +F    + TIG  F ++ + ++   +K +IWD
Sbjct: 8   NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWD 67

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE + S+   YYRGAA A++V+D+T + +F     W+++ +   NPNM + L GNK 
Sbjct: 68  TAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKS 127

Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 173
           DL   R V+ E+ + +A+ENGL F+E SA+TA NV+E F + A ++ +    
Sbjct: 128 DLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPT 179

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  315 bits (809), Expect = e-111
 Identities = 65/193 (33%), Positives = 113/193 (58%), Gaps = 11/193 (5%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRP------- 54
            YDYL K + +GD+GVGK+  L ++TD +F P    T+G++F  + V  + +        
Sbjct: 21  DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGK 80

Query: 55  ---IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP- 110
              + LQ+WDTAGQE FRS+T +++R A G LL++D+T +++F ++ +W+   + +A   
Sbjct: 81  AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 140

Query: 111 NMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           N  I+L+GNK DL  +R V++ +  + A + G+ + E SA T QNVE+A       I++ 
Sbjct: 141 NPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKR 200

Query: 171 IQEGALDAVNDQS 183
           +++         +
Sbjct: 201 MEQCVEKTQIPDT 213

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  313 bits (805), Expect = e-111
 Identities = 59/168 (35%), Positives = 100/168 (59%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           S  Y FK +++G+  VGK+ L+L++ + +F   H  T+G  F  + + I G+ + L IWD
Sbjct: 2   SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWD 61

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE F ++   YYR + GA+LVYDIT  ++F  + +W+++ R+     + + +VGNK 
Sbjct: 62  TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKI 121

Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
           DL   R VS +E E +A+  G      SA+  + +EE F+    ++++
Sbjct: 122 DLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  314 bits (807), Expect = e-111
 Identities = 66/188 (35%), Positives = 109/188 (57%), Gaps = 11/188 (5%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID---------- 51
            YDYL K++ +GD+GVGK+ +L Q+TD +F      T+G++F  + V             
Sbjct: 7   DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGR 66

Query: 52  GRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NP 110
           G+ I LQ+WDTAG E FRS+T +++R A G LL++D+T  ++F ++ +W+   + HA + 
Sbjct: 67  GQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSE 126

Query: 111 NMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           N  I+L GNK DL  +RAV +EE  + A++ G+ + E SA    N+  A       I++ 
Sbjct: 127 NPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKR 186

Query: 171 IQEGALDA 178
           ++     +
Sbjct: 187 MERSVDKS 194

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  313 bits (805), Expect = e-111
 Identities = 81/170 (47%), Positives = 113/170 (66%), Gaps = 1/170 (0%)

Query: 4   DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTA 63
           D + K ++IGD+GVGKSCLL++F + +F P    TIG++F  + V I+G+ +KLQIWDTA
Sbjct: 1   DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60

Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 123
           GQE FR+IT +YYRGA G +LVYDIT   TF ++  W +   +HAN    ++LVGNK D+
Sbjct: 61  GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120

Query: 124 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 173
              R V+ ++GE  AKE G+ F+E+SA+   NV E F   A  I + I  
Sbjct: 121 -ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 169

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  312 bits (801), Expect = e-110
 Identities = 71/174 (40%), Positives = 102/174 (58%), Gaps = 5/174 (2%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           S   +FK I+IGD+ VGK+CL  +F   RF    + TIGV+F  R V IDG  IK+Q+WD
Sbjct: 16  SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWD 75

Query: 62  TAGQESFR-SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPN-MSIMLVGN 119
           TAGQE FR S+ + YYR     + VYD+T   +F+ L +W+E+ +QH   N +  +LVGN
Sbjct: 76  TAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGN 135

Query: 120 KCDLAHRRAVSKEEGEQFAKENGLLFLEASARTA---QNVEEAFIKTAAKILQN 170
           KCDL     V  +  ++FA  + +   E SA+      +VE  F+  A K+  +
Sbjct: 136 KCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKSH 189

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  310 bits (796), Expect = e-109
 Identities = 49/192 (25%), Positives = 88/192 (45%), Gaps = 9/192 (4%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDK--RFQPVHDLTIGVEFGARMVTIDGRPIKLQ 58
           ++     K  ++G+  VGKS L+  FT K  +F   + +T GVE     VTI    + ++
Sbjct: 15  ITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVE 74

Query: 59  IW--DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQ---HANPNMS 113
           ++  DTAG + ++     Y+ G   A+LV+D++  E+F    +W E  +         + 
Sbjct: 75  LFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLR 134

Query: 114 IMLVGNKCDLAH-RRAVSKEEGEQFAKENGLLFLEASAR-TAQNVEEAFIKTAAKILQNI 171
            +LV NK DL   R  V  +  + +A  N L F + SA    ++ +  F+  A    +N 
Sbjct: 135 AVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNY 194

Query: 172 QEGALDAVNDQS 183
           ++      +   
Sbjct: 195 EDKVAAFQDACR 206

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  308 bits (792), Expect = e-109
 Identities = 72/169 (42%), Positives = 111/169 (65%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           +    FK +++G++ VGKS L+L+F   +F    + TIG  F  + V +D   +K +IWD
Sbjct: 2   NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE + S+   YYRGA  A++VYDIT  E+F    +W+++ ++ A+PN+ I L GNK 
Sbjct: 62  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 121

Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           DLA++RAV  +E + +A +N LLF+E SA+T+ NV E F+  A K+ +N
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  308 bits (792), Expect = e-108
 Identities = 64/175 (36%), Positives = 98/175 (56%), Gaps = 6/175 (3%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
            S    +K ++ GD  VGKS  L++     F+     T+GV+F  + + +DG    LQ+W
Sbjct: 23  FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLW 82

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
           DTAGQE FRSI +SY+R A G LL+YD+T  ++F ++  W++     A+  + IMLVGNK
Sbjct: 83  DTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNK 142

Query: 121 CDLAH------RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
            D+        ++ V    GE+ A   G LF E SA+   N+ EA +  A ++ +
Sbjct: 143 ADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKK 197

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  308 bits (790), Expect = e-108
 Identities = 75/209 (35%), Positives = 115/209 (55%), Gaps = 10/209 (4%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           +    FK + +G+  VGK+ L+ +F    F   +  TIG++F ++ + ++ R ++LQ+WD
Sbjct: 12  NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 71

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAG E FRS+  SY R +  A++VYDIT   +F   + W++D R     ++ IMLVGNK 
Sbjct: 72  TAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 131

Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVND 181
           DLA +R VS EEGE+ AKE  ++F+E SA+   NV++ F + AA +             D
Sbjct: 132 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSR-ED 190

Query: 182 QSGIKVGYGRGQGPSGARDGTVSQRGGCC 210
              IK+   + Q  S          GGC 
Sbjct: 191 MIDIKLEKPQEQPVSE---------GGCL 210

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  306 bits (786), Expect = e-108
 Identities = 61/176 (34%), Positives = 88/176 (50%), Gaps = 4/176 (2%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRP-IKLQIW 60
           S+    K +++GD   GK+ L   F  + F   +  TIG++F  R +T+ G   + LQIW
Sbjct: 2   SHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIW 61

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQ---HANPNMSIMLV 117
           D  GQ     +   Y  GA G LLVYDIT  ++F +L  W    ++    +     + LV
Sbjct: 62  DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALV 121

Query: 118 GNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 173
           GNK DL H R +  E+  +F +ENG      SA+T  +V   F K AA+IL     
Sbjct: 122 GNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIKLN 177

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  304 bits (782), Expect = e-107
 Identities = 61/167 (36%), Positives = 89/167 (53%), Gaps = 1/167 (0%)

Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
            +   K +++G+  VGKS ++ ++    F   +  TIGV+F  R + ++   ++L +WDT
Sbjct: 2   SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDT 61

Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE F +IT++YYRGA   +LV+  T RE+F  +SSW E        ++   LV NK D
Sbjct: 62  AGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKID 120

Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
           L     +  EE E  AK   L F   S +   NV E F   A K LQ
Sbjct: 121 LLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  303 bits (779), Expect = e-107
 Identities = 66/163 (40%), Positives = 99/163 (60%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K  ++GDTGVGKS ++ +F +  F P  + TIG  F  + V       K  IWDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            FR++   YYRG+A A++VYDIT+ ETF+ L +W+ + RQH  P++ + + GNKCDL   
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126

Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
           R V + + + +A     +F+E SA+ A N+ E FI+ + +I  
Sbjct: 127 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPS 169

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  304 bits (781), Expect = e-106
 Identities = 74/216 (34%), Positives = 111/216 (51%), Gaps = 16/216 (7%)

Query: 1   MS--YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQ 58
           M+     L K II+GD+GVGK+ L+ Q+ +K+F   +  TIG +F  + V +D R + +Q
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60

Query: 59  IWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP----NMSI 114
           IWDTAGQE F+S+  ++YRGA   +LV+D+T   TF  L SW ++    A+P    N   
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120

Query: 115 MLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG 174
           +++GNK DL +R+  +K        +N + + E SA+ A NVE+AF   A   L+   E 
Sbjct: 121 VVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 180

Query: 175 ALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGCC 210
            L        IK+        S            C 
Sbjct: 181 ELYN-EFPEPIKLDKNERAKASA---------ESCS 206

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  302 bits (777), Expect = e-106
 Identities = 63/175 (36%), Positives = 102/175 (58%), Gaps = 6/175 (3%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
               LFK I++GD GVGKS L+ ++   +F      TIGVEF  + + +DG  + +QIWD
Sbjct: 3   GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWD 62

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP----NMSIMLV 117
           TAGQE FRS+   +YRG+   LL + +   ++F +LS+W ++   +A+     +   +++
Sbjct: 63  TAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVIL 122

Query: 118 GNKCDLAHRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKILQNI 171
           GNK D++  R VS EE + + ++NG   + E SA+ A NV  AF +   ++L   
Sbjct: 123 GNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATE 176

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  302 bits (777), Expect = e-106
 Identities = 63/172 (36%), Positives = 98/172 (56%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           S     K  ++GDTGVGKS ++ +F    F      TIG  F  + V       K  IWD
Sbjct: 19  SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWD 78

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE F S+   YYRG+A A++VYDIT++++F  L  W+++ ++H   N+ + + GNKC
Sbjct: 79  TAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKC 138

Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 173
           DL+  R V  ++ +++A+  G + +E SA+ A N+EE F   + +I      
Sbjct: 139 DLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDPH 190

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  302 bits (775), Expect = e-106
 Identities = 68/166 (40%), Positives = 107/166 (64%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           +    FK + +G+  VGK+ L+ +F    F   +  TIG++F ++ + ++ R ++LQ+WD
Sbjct: 10  NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 69

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE FRS+  SY R +  A++VYDIT   +F+  S W++D R     ++ IMLVGNK 
Sbjct: 70  TAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKT 129

Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           DL+ +R VS EEGE+ AKE  ++F+E SA+   NV++ F + AA +
Sbjct: 130 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  299 bits (767), Expect = e-104
 Identities = 54/182 (29%), Positives = 90/182 (49%), Gaps = 1/182 (0%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVE-FGARMVTIDGRPIKLQIW 60
             +  +K  +IGD GVGK+  + +  D RF+  ++ T+G        +   G  IK  +W
Sbjct: 7   RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVW 66

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
           DTAGQE    +   YY GA+GA+L +D+T R T  +L+ W+++ +        I++  NK
Sbjct: 67  DTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANK 126

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
            D+ +R+ +SK+   +  K     + E SA+TA N    F+  A           +  VN
Sbjct: 127 IDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVN 186

Query: 181 DQ 182
            +
Sbjct: 187 LE 188

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  290 bits (744), Expect = e-101
 Identities = 61/209 (29%), Positives = 97/209 (46%), Gaps = 40/209 (19%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIK---- 56
           M     +K +++G++ VGKS ++L+ T   F    + TIG  F   +V ++   IK    
Sbjct: 2   MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSN 61

Query: 57  ---------------------------------LQIWDTAGQESFRSITRSYYRGAAGAL 83
                                              IWDTAGQE + SI   YYRGA  A+
Sbjct: 62  NEKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAI 121

Query: 84  LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL 143
           +V+DI+   T +   +W+   +   + N  I+LV NK D      V   E +++A++N L
Sbjct: 122 VVFDISNSNTLDRAKTWVNQLK--ISSNYIIILVANKIDKNK-FQVDILEVQKYAQDNNL 178

Query: 144 LFLEASARTAQNVEEAFIKTAAKILQNIQ 172
           LF++ SA+T  N++  F   A +I +NI 
Sbjct: 179 LFIQTSAKTGTNIKNIFYMLAEEIYKNII 207

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  289 bits (742), Expect = e-101
 Identities = 65/181 (35%), Positives = 106/181 (58%), Gaps = 9/181 (4%)

Query: 1   MS--YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDG-RPIKL 57
           MS     + K II+GD+GVGK+ L+ ++ + ++   +  TIG +F  + VT+DG +   +
Sbjct: 1   MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATM 60

Query: 58  QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP----NMS 113
           Q+WDTAGQE F+S+  ++YRGA   +LVYD+T   +F ++ SW ++   HAN        
Sbjct: 61  QVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFP 120

Query: 114 IMLVGNKCDLAH-RRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKILQNI 171
            +++GNK D    ++ VS++  ++ AK  G +     SA+ A NV+ AF + A   LQ  
Sbjct: 121 FVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQN 180

Query: 172 Q 172
           Q
Sbjct: 181 Q 181

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  280 bits (718), Expect = 6e-97
 Identities = 50/172 (29%), Positives = 89/172 (51%), Gaps = 3/172 (1%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
                FK +++GD G GK+  + +     F+  +  T+GVE    +   +  PIK  +WD
Sbjct: 11  EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWD 70

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK 
Sbjct: 71  TAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKV 129

Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 173
           D+  R+     +   F ++  L + + SA++  N E+ F+  A K++ +   
Sbjct: 130 DIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 179

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  260 bits (666), Expect = 2e-89
 Identities = 46/174 (26%), Positives = 74/174 (42%), Gaps = 2/174 (1%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
             D +FK +++G++GVGKS L   F   +    H+     +   R + +D   + L ++D
Sbjct: 19  QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYD 78

Query: 62  TAGQESFRSITRS-YYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGN 119
              Q       R    +     L+V+ +T R +F+ +   L        + ++ ++LVGN
Sbjct: 79  IWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGN 138

Query: 120 KCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 173
           K DLA  R VS EEG   A       +E SA    N  E F     +I      
Sbjct: 139 KSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRRGR 192

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  257 bits (658), Expect = 1e-88
 Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 2/166 (1%)

Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           +FK +++G++GVGKS L   F   +    H++    +   R + +D   + L ++D   Q
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61

Query: 66  ESFRSITRS-YYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVGNKCDL 123
                  +    +     L+V+ +T R +F+ +   L        + ++ ++LVGNK DL
Sbjct: 62  GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL 121

Query: 124 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
           A  R VS EEG   A       +E SA    N  E F     +I  
Sbjct: 122 ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRL 167

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  257 bits (658), Expect = 2e-88
 Identities = 57/170 (33%), Positives = 87/170 (51%), Gaps = 2/170 (1%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
                 K +++G  GVGKS L +QF    F   +D TI   +  ++ ++DG P +L I D
Sbjct: 5   PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARLDILD 63

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNK 120
           TAGQE F ++   Y R   G LLV+ I  R++FN +        R     +  ++LVGNK
Sbjct: 64  TAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNK 123

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
            DL  +R V + E   F   + + + EASA+   NV+EAF +    + + 
Sbjct: 124 ADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKY 173

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  251 bits (644), Expect = 3e-86
 Identities = 60/173 (34%), Positives = 93/173 (53%), Gaps = 2/173 (1%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           +   L K I++G  GVGKS L LQF    F   ++ T    +  + V +DG  +++ I D
Sbjct: 14  NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILD 72

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNK 120
           TAGQE + +I  +Y+R   G L V+ IT  E+F   + + E   R   + N+  +LVGNK
Sbjct: 73  TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 132

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 173
            DL  +R VS EE +  A++  + ++E SA+T  NV++ F     +I     E
Sbjct: 133 SDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKME 185

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  251 bits (643), Expect = 8e-86
 Identities = 64/210 (30%), Positives = 100/210 (47%), Gaps = 16/210 (7%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           +   L K I++G  GVGKS L LQF    F   ++ T    +  + V +DG  +++ I D
Sbjct: 10  NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILD 68

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNK 120
           TAGQE + +I  +Y+R   G L V+ IT  E+F   + + E   R   + N+  +LVGNK
Sbjct: 69  TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 128

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 180
            DL  +R VS EE +  A++  + ++E SA+T  NV++ F     +I     E + +   
Sbjct: 129 SDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDSKEK-- 186

Query: 181 DQSGIKVGYGRGQGPSGARDGTVSQRGGCC 210
                        G    +      R  CC
Sbjct: 187 ------------NGKKKRKSLAKRIRERCC 204

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  247 bits (632), Expect = 1e-84
 Identities = 59/163 (36%), Positives = 90/163 (55%), Gaps = 2/163 (1%)

Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           L K I++G  GVGKS L LQF    F   ++ T    +  + V +DG  +++ I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQ 62

Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLA 124
           E + +I  +Y+R   G L V+ IT  E+F   + + E   R   + N+  +LVGNK DL 
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122

Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
            +R VS EE +  A +  + ++E SA+T  NV++ F     +I
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  247 bits (632), Expect = 4e-84
 Identities = 53/168 (31%), Positives = 85/168 (50%), Gaps = 2/168 (1%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           M      K +I+G   VGK+ L  QF +  F   +D T+   + +++VT+      L + 
Sbjct: 19  MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLV 77

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGN 119
           DTAGQ+ +  +  S+  G  G +LVY +T   +F  + S  +     H    + ++LVGN
Sbjct: 78  DTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGN 137

Query: 120 KCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           K DL+  R V   EG++ A+  G  F+E+SAR  Q  +  F K   +I
Sbjct: 138 KADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  245 bits (627), Expect = 9e-84
 Identities = 54/168 (32%), Positives = 84/168 (50%), Gaps = 2/168 (1%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           M      K  I+G   VGKS L +QF + +F   +D TI   F  +++T++G+   LQ+ 
Sbjct: 1   MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLV 59

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGN 119
           DTAGQ+ +    ++Y     G +LVY +T  ++F  +               + IMLVGN
Sbjct: 60  DTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGN 119

Query: 120 KCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           K DL   R +S EEG+  A+     FLE+SA+  Q   + F +   + 
Sbjct: 120 KKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEA 167

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  244 bits (624), Expect = 2e-83
 Identities = 68/166 (40%), Positives = 101/166 (60%), Gaps = 3/166 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++G+  VGKS ++L+F    F    + TIG  F  + VTI+   +K +IWDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH- 125
            F S+   YYR A  AL+VYD+T+ ++F     W+++  + A+ ++ I LVGNK D    
Sbjct: 64  RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQE 123

Query: 126 --RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
              R V++EEGE+ A+E GLLF E SA+T +NV + F+    KI  
Sbjct: 124 GGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPL 169

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  240 bits (616), Expect = 5e-82
 Identities = 55/173 (31%), Positives = 83/173 (47%), Gaps = 4/173 (2%)

Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           L++ +++GD GVGK+ L   F  K+ + +H+  +G +   R +T+DG    L + DT   
Sbjct: 4   LYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDTWEA 62

Query: 66  ESFRSIT--RSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCD 122
           E         S  +G +  ++VY I  R +F   S       R H   ++ I+LVGNK D
Sbjct: 63  EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKAD 122

Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGA 175
           LA  R VS EEG   A      F+E SA    NV E F     ++    ++ A
Sbjct: 123 LARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLRRRDSA 175

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  237 bits (606), Expect = 2e-80
 Identities = 55/170 (32%), Positives = 90/170 (52%), Gaps = 3/170 (1%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
                +K +++GD GVGKS L +QF  K F   +D TI   +  +   ID +   L + D
Sbjct: 14  ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLD 72

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNK 120
           TAGQE F ++   Y R   G L+VY +T + +F H+  + +   R     +  ++LV NK
Sbjct: 73  TAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANK 132

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQ-NVEEAFIKTAAKILQ 169
            DL H R V++++G++ A +  + ++E SA+    NV++ F      I Q
Sbjct: 133 VDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 182

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  235 bits (601), Expect = 1e-79
 Identities = 62/171 (36%), Positives = 87/171 (50%), Gaps = 4/171 (2%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           M+     K  I G  GVGKS L+++F  KRF   +D T+   +     TID   + ++I 
Sbjct: 23  MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEVVSMEIL 81

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGN 119
           DTAGQE        + R   G +LVYDIT R +F  +              N++++LVGN
Sbjct: 82  DTAGQEDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGN 140

Query: 120 KCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQ-NVEEAFIKTAAKILQ 169
           K DL H R VS EEGE+ A E    F E SA T + N+ E F +   ++ +
Sbjct: 141 KADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRR 191

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  232 bits (594), Expect = 8e-79
 Identities = 56/165 (33%), Positives = 88/165 (53%), Gaps = 3/165 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +Q     F    D TI   +  + V IDG    L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP-NMSIMLVGNKCDLAH 125
            + ++   Y R   G L V+ I   ++F  +  + E  ++  +  ++ ++LVGNK DLA 
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA 122

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
            R V   + +  A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  231 bits (591), Expect = 2e-78
 Identities = 55/162 (33%), Positives = 86/162 (53%), Gaps = 2/162 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +QF    F   +D TI  +F  + + +D  P  L+I DTAG E
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAH 125
            F S+   Y +   G +LVY +  +++F  +    +   R      + ++LVGNK DL  
Sbjct: 63  QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
            R VS  EG   A+E G  F+E SA++   V+E F +   ++
Sbjct: 123 EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  229 bits (586), Expect = 1e-77
 Identities = 46/165 (27%), Positives = 70/165 (42%), Gaps = 3/165 (1%)

Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           ++K +++G  GVGKS L   F      P      G  +  R + +DG    L ++D   Q
Sbjct: 2   VYKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAGHTY-DRSIVVDGEEASLMVYDIWEQ 59

Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLA 124
           +  R +           ++VY +T + +F   S       R     ++ I+LVGNK DL 
Sbjct: 60  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 119

Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
             R VS +EG   A      F+E SA    NV+  F     +I  
Sbjct: 120 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRL 164

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  227 bits (582), Expect = 5e-77
 Identities = 61/165 (36%), Positives = 89/165 (53%), Gaps = 3/165 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +QF    F   +D TI   +  + V +D +   L+I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTE 62

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAH 125
            F ++   Y +   G  LVY IT + TFN L    E   R     ++ ++LVGNKCDL  
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122

Query: 126 RRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAKILQ 169
            R V KE+G+  A++     FLE+SA++  NV E F     +I +
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  227 bits (582), Expect = 2e-76
 Identities = 49/193 (25%), Positives = 86/193 (44%), Gaps = 4/193 (2%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
                ++ ++ G  GVGKS L+L+F    F+  +  TI   +  ++++ D     LQI D
Sbjct: 4   EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITD 62

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQ--HANPNMSIMLVGN 119
           T G   F ++ R         +LV+ +T +++   L    +   Q   +  ++ +MLVGN
Sbjct: 63  TTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGN 122

Query: 120 KCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAV 179
           KCD   +R V   E +  A+E    F+E SA+   NV+E F +      +      +D  
Sbjct: 123 KCDE-TQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNMSLNIDGK 181

Query: 180 NDQSGIKVGYGRG 192
                 +    +G
Sbjct: 182 RSGKQKRTDRVKG 194

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  225 bits (576), Expect = 5e-76
 Identities = 50/165 (30%), Positives = 78/165 (47%), Gaps = 3/165 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           ++  + G  GVGKS L+L+F    F+  +  T+   +  ++++ D     LQI DT G  
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSH 62

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLA 124
            F ++ R         +LVY IT R++   L    E   +      ++ IMLVGNKCD +
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122

Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
             R V   E E  A+     F+E SA+   NV+E F +      +
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKR 167

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  225 bits (576), Expect = 2e-75
 Identities = 50/171 (29%), Positives = 75/171 (43%), Gaps = 7/171 (4%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIGVEFGARMVTIDGRP---IKL 57
           S +  ++ ++IG+ GVGKS L   F         D   +G +   R + +DG     I L
Sbjct: 33  SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILL 92

Query: 58  QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIML 116
            +W+  G+  +  +     +     L+VY IT R +F   S       R     ++ I+L
Sbjct: 93  DMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 150

Query: 117 VGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           VGNK DL   R VS  EG   A      F+E SA    NV+E F     ++
Sbjct: 151 VGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 201

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  223 bits (572), Expect = 3e-75
 Identities = 54/170 (31%), Positives = 85/170 (50%), Gaps = 6/170 (3%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
                    I+G  G GKS L ++F  KRF   +D  +   +     T+D +P+ L++ D
Sbjct: 17  QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS-SEETVDHQPVHLRVMD 75

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA---NPNMSIMLVG 118
           TA  ++ R+  R Y   A   L+VY +  R++F+  SS+LE    HA     ++  +L+G
Sbjct: 76  TADLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLG 134

Query: 119 NKCDLAHRRAVSKEEGEQFAKENGLLFLEASART-AQNVEEAFIKTAAKI 167
           NK D+A  R V+K EG   A   G LF E SA    ++V+  F +   + 
Sbjct: 135 NKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREA 184

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  223 bits (570), Expect = 7e-75
 Identities = 58/181 (32%), Positives = 95/181 (52%), Gaps = 3/181 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +Q     F   +D TI   +  + V IDG    L I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 63

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAH 125
            + ++   Y R   G L V+ I   ++F  +  + E   R   + ++ ++LVGNKCDL  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL-P 122

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGI 185
            R V  ++ +  A+  G+ F+E SA+T Q V++AF     +I ++ ++ + D    +   
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMSKDGKKKKKKS 182

Query: 186 K 186
           K
Sbjct: 183 K 183

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  219 bits (561), Expect = 2e-73
 Identities = 58/164 (35%), Positives = 90/164 (54%), Gaps = 3/164 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +Q     F   +D TI   +  + V IDG    L I DTAGQE
Sbjct: 22  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 80

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP-NMSIMLVGNKCDLAH 125
            + ++   Y R   G L V+ I   ++F  ++ + E  ++  +  ++ ++LVGNKCDL  
Sbjct: 81  EYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL-P 139

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
            R V  ++  + AK  G+ F+E SA+T Q VE+AF     +I Q
Sbjct: 140 TRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQ 183

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  217 bits (555), Expect = 1e-72
 Identities = 37/177 (20%), Positives = 74/177 (41%), Gaps = 15/177 (8%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPV--HDLTIGVEFGARMVTIDG---RPIKLQIWD 61
            K +I+G+TG GK+ LL Q    +   +     T+G++     + I     R + L +WD
Sbjct: 3   MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRET-FNHLSSWLEDARQHANPNMSIMLVGNK 120
            AG+E F S    +    A  L VYD+++ +   + +  WL + +  A  +  ++LVG  
Sbjct: 63  FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTH 121

Query: 121 CDLAHRR---AVSKEEGEQFAKENGL-----LFLEASARTAQNVEEAFIKTAAKILQ 169
            D++  +   A   +  ++   + G           +   +  + +       + L 
Sbjct: 122 LDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLN 178

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  215 bits (550), Expect = 7e-72
 Identities = 49/171 (28%), Positives = 73/171 (42%), Gaps = 7/171 (4%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIGVEFGARMVTIDGRP---IKL 57
                ++ ++IG+ GVGKS L   F         D   +G +   R + +DG     I L
Sbjct: 2   FGMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILL 61

Query: 58  QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIML 116
            +W+  G+  +  +     +     L+VY IT R +F   S       R     ++ I+L
Sbjct: 62  DMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119

Query: 117 VGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           VGNK DL   R VS  EG   A      F+E SA    NV+E F     ++
Sbjct: 120 VGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV 170

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  198 bits (506), Expect = 3e-65
 Identities = 31/171 (18%), Positives = 65/171 (38%), Gaps = 11/171 (6%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K  I+G+   GKS L+ ++    +        G  F  + + +DG+   L I D  G  
Sbjct: 21  LKVGIVGNLSSGKSALVHRYLTGTYVQEES-PEGGRF-KKEIVVDGQSYLLLIRDEGGPP 78

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP-NMSIMLVGNKCDL-- 123
             +     +       + V+ +    +F  + ++        N   + ++LVG +  +  
Sbjct: 79  ELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISA 133

Query: 124 AHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKILQNIQE 173
           A+ R +      + + +     + E  A    NVE  F   A K++   ++
Sbjct: 134 ANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVALRKK 184

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  192 bits (490), Expect = 7e-63
 Identities = 34/179 (18%), Positives = 69/179 (38%), Gaps = 13/179 (7%)

Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
             +  ++GD   GKS L+ +F    +Q   + T   ++  + + +DG+   + I + AG 
Sbjct: 7   ELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGA 64

Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLE---DARQHANPNMSIMLVG--NK 120
              +     +   A   + V+ +    +F  +S         R      +++ LVG  ++
Sbjct: 65  PDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDR 119

Query: 121 CDLAHRRAVSKEEGEQF-AKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDA 178
              +  R V         A      + E  A    NV+  F + A K++   ++  L A
Sbjct: 120 ISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQQQLLA 178

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  199 bits (506), Expect = 2e-61
 Identities = 32/177 (18%), Positives = 63/177 (35%), Gaps = 12/177 (6%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTI--------DG 52
           + +    K  +IGD   GK+ LL Q   + F P    T G+    +            + 
Sbjct: 36  LVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDEL 95

Query: 53  RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNM 112
           +      WD  GQE   +  + +   ++  +L+ D     T ++   WL    ++     
Sbjct: 96  KECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIEKYG-GKS 151

Query: 113 SIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
            +++V NK D      + +++  +        F   S +    VE       + +L 
Sbjct: 152 PVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLH 208

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  166 bits (423), Expect = 1e-52
 Identities = 44/170 (25%), Positives = 81/170 (47%), Gaps = 7/170 (4%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           +     K +++GD  VGK+CLLL F+       +  T+   F   ++        L +WD
Sbjct: 19  NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHLWD 77

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNK 120
           TAGQE +  +    Y  +   LL + +  R +F+++S+ W  + + +       +LVG K
Sbjct: 78  TAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLK 136

Query: 121 CDLAH--RRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKI 167
            DL       V+K+EG+   ++ G + ++EAS+     + E F + +   
Sbjct: 137 VDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF-EKSVDC 185

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  159 bits (405), Expect = 4e-50
 Identities = 51/179 (28%), Positives = 92/179 (51%), Gaps = 15/179 (8%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MS     K + +GD  VGK+CLL+ +T   F   +  T+   F A +  ++G  + L +W
Sbjct: 3   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANV-VVNGATVNLGLW 61

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGN 119
           DTAGQE +  +    YRGA   +L + +  + ++ ++S  W+ + + +A P + I+LVG 
Sbjct: 62  DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGT 120

Query: 120 KCDL----------AHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKI 167
           K DL               ++  +GE+  K  G   ++E S+++ +NV+  F   A ++
Sbjct: 121 KLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVF-DAAIRV 178

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  154 bits (392), Expect = 1e-47
 Identities = 55/170 (32%), Positives = 93/170 (54%), Gaps = 12/170 (7%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MS     K + +GD  VGK+C+L+ +T  +F   +  T+   F A  V +DG+ + L +W
Sbjct: 4   MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGQIVNLGLW 62

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGN 119
           DTAGQE +  +    YRGA   +L + +  + ++ ++   W+ + R+ A PN+ I+LVG 
Sbjct: 63  DTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGT 121

Query: 120 KCDL--------AHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
           K DL         H   ++  +GE+  K+ G   ++E S++T QNV+  F
Sbjct: 122 KLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVF 171

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  152 bits (386), Expect = 8e-47
 Identities = 50/175 (28%), Positives = 89/175 (50%), Gaps = 17/175 (9%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD G GK+ LL+ F D  F   +  T+   +    + + G+P+ L IWDTAGQ+
Sbjct: 35  VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMV-NLQVKGKPVHLHIWDTAGQD 93

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKCDLAH 125
            +  +   +Y  A+  LL +D+T   +F+++ + W  +        + I++VG K DL  
Sbjct: 94  DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRK 152

Query: 126 RRA------------VSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKI 167
            ++            V+   G++ A+  G + +LE SAR   NV   F + AA++
Sbjct: 153 DKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVF-QEAAEV 206

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  149 bits (377), Expect = 2e-45
 Identities = 48/174 (27%), Positives = 85/174 (48%), Gaps = 17/174 (9%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++GD   GK+CLL+ F+   F  V+  T+   + A  + +DG+ ++L +WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 85

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKCDLAH- 125
           +  +    Y      L+ + +   ++  ++   W+ + +    PN+ I+LV NK DL   
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSD 144

Query: 126 -----------RRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKI 167
                      +  V  ++G   A       +LE SA+T + V E F +TA + 
Sbjct: 145 EHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVF-ETATRA 197

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  147 bits (372), Expect = 6e-45
 Identities = 51/181 (28%), Positives = 84/181 (46%), Gaps = 19/181 (10%)

Query: 4   DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTA 63
               K +I+GD   GK+CLL+ F+  +F  V+  T+  E     + +DG+ ++L +WDTA
Sbjct: 23  AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEVDGKQVELALWDTA 81

Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKCD 122
           GQE +  +    Y      L+ + I   ++  ++   W  + +    PN+ I+LVGNK D
Sbjct: 82  GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKD 140

Query: 123 L------------AHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF---IKTAAK 166
           L              +  V  EEG   A       +LE SA+T + V E F    +   +
Sbjct: 141 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200

Query: 167 I 167
           +
Sbjct: 201 V 201

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  144 bits (364), Expect = 1e-43
 Identities = 52/175 (29%), Positives = 84/175 (48%), Gaps = 19/175 (10%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+  +  +  V +DG+P+ L +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 89

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGNKCDL-- 123
            +  +    Y      L+ + +    +F N  + W  + R H  PN  I+LVG K DL  
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 148

Query: 124 ----------AHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF---IKTA 164
                          ++  +G   AKE G + +LE SA T + ++  F   I+  
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  140 bits (355), Expect = 2e-42
 Identities = 49/173 (28%), Positives = 83/173 (47%), Gaps = 15/173 (8%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++GD  VGK+CLL+ +T   F P   +    +  +  V +DG+P+ L +WDTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 65

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL---- 123
           +  +    Y     +L+ + +    +F ++ +      +H  PN  I+LVG K DL    
Sbjct: 66  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 125

Query: 124 --------AHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKI 167
                        ++  +G   AKE G + +LE SA T + ++  F   A + 
Sbjct: 126 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF-DEAIRA 177

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  140 bits (355), Expect = 3e-42
 Identities = 47/181 (25%), Positives = 84/181 (46%), Gaps = 20/181 (11%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           + +   K +++GD+  GK+ LL  F    F   +  T+   + A    ID + I+L +WD
Sbjct: 24  NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF-EIDTQRIELSLWD 82

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNK 120
           T+G   + ++    Y  +   L+ +DI+R ET + +   W  + ++   PN  ++LVG K
Sbjct: 83  TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCK 141

Query: 121 CDL------------AHRRAVSKEEGEQFAKENGLL-FLEASARTAQN-VEEAF---IKT 163
            DL              +  VS ++G   AK+ G   ++E SA  ++N V + F      
Sbjct: 142 SDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLA 201

Query: 164 A 164
            
Sbjct: 202 C 202

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  139 bits (353), Expect = 3e-42
 Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 17/168 (10%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++GD+  GK+ LL  F    F   +  T+   + A    ID + I+L +WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF-EIDTQRIELSLWDTSGSPY 67

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKCDL--- 123
           + ++    Y  +   L+ +DI+R ET + +   W  + ++   PN  ++LVG K DL   
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTD 126

Query: 124 ---------AHRRAVSKEEGEQFAKENGLL-FLEASARTAQN-VEEAF 160
                      +  VS ++G   AK+ G   ++E SA  ++N V + F
Sbjct: 127 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 174

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  138 bits (350), Expect = 2e-41
 Identities = 43/181 (23%), Positives = 84/181 (46%), Gaps = 18/181 (9%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
                 K +++GD   GK+ +L       +   +  T+   + A +   + + ++L +WD
Sbjct: 23  PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACL-ETEEQRVELSLWD 81

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGNK 120
           T+G   + ++    Y  +   LL +DI+R ET  + L  W  +   +  P+  ++L+G K
Sbjct: 82  TSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCK 140

Query: 121 CDLAHRRA------------VSKEEGEQFAKENGLL-FLEASARTAQ-NVEEAFIKTAAK 166
            DL    +            +S E+G   AK+ G   +LE SA T++ ++   F +TA+ 
Sbjct: 141 TDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIF-RTASM 199

Query: 167 I 167
           +
Sbjct: 200 L 200

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  137 bits (348), Expect = 2e-41
 Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 16/174 (9%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
            +     K +++GD  VGK+ L++ +T   +   +  T   +  + +V++DGRP++LQ+ 
Sbjct: 15  GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA-FDNFSAVVSVDGRPVRLQLC 73

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNH-LSSWLEDARQHANPNMSIMLVGN 119
           DTAGQ+ F  +    Y      LL + +    +F +    W+ + R H  P   I+LVG 
Sbjct: 74  DTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGT 132

Query: 120 KCDLAHRRA------------VSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
           + DL                 V +E  +  A+E     ++E SA T +N++E F
Sbjct: 133 QSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  135 bits (341), Expect = 3e-40
 Identities = 45/178 (25%), Positives = 85/178 (47%), Gaps = 17/178 (9%)

Query: 4   DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTA 63
             + K +++GD  VGK+CLL+ + +  F   +  T+  +  A  VT+ G+   L ++DTA
Sbjct: 16  ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTA 74

Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNH-LSSWLEDARQHANPNMSIMLVGNKCD 122
           GQE +  +    Y      L+ + +    +F +    W+ + +++A PN+  +L+G + D
Sbjct: 75  GQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQID 133

Query: 123 LAHRRA------------VSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKI 167
           L                 +  E+G++ AKE G   ++E SA T + ++  F   A   
Sbjct: 134 LRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF-DEAIIA 190

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score =  134 bits (339), Expect = 2e-39
 Identities = 46/220 (20%), Positives = 70/220 (31%), Gaps = 66/220 (30%)

Query: 13  GDTGVGKSCLLLQF---TDKRFQPVHDLTIG-VEFGARMV--------------TIDGRP 54
           G  G+GKSCL  +F   +   F   H   +   +FG R+V                D   
Sbjct: 35  GQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94

Query: 55  IKLQIW-------DTAGQESFRSITRSYYRGAA--------------------------- 80
            K+ I        D   Q    +  + Y + AA                           
Sbjct: 95  CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQK 154

Query: 81  ----------GALLVYDITR--RETFNHLSSWLEDARQHANP-NMSIMLVGNKCDLAHRR 127
                     G LL  D++R     F+    ++ +           I++V  KCD    R
Sbjct: 155 QMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVER 214

Query: 128 AVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
            +        +K+N L  +E SAR+  NV+ AF      I
Sbjct: 215 YIRDAHTFALSKKN-LQVVETSARSNVNVDLAFSTLVQLI 253

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score =  105 bits (264), Expect = 1e-27
 Identities = 52/178 (29%), Positives = 85/178 (47%), Gaps = 19/178 (10%)

Query: 4   DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTA 63
             L K +++GD  VGK+CLL+ +T   F P   +    +  +  V +DG+P+ L +WDTA
Sbjct: 153 KELIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 211

Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKCD 122
           G E +  +    Y      L+ + +    +F+H+ + W  + R H  PN  I+LVG K D
Sbjct: 212 GLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLD 270

Query: 123 L------------AHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF---IKTA 164
           L                 ++  +G   AKE G + +LE SA T + ++  F   I+  
Sbjct: 271 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 328

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 87.1 bits (216), Expect = 1e-21
 Identities = 34/186 (18%), Positives = 62/186 (33%), Gaps = 19/186 (10%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKR----------FQPVHDLTIGVEFGARMV-TIDGRPI 55
           FK +  G    GK+  L     K                + T+  +F    +  + G   
Sbjct: 15  FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKT 74

Query: 56  KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSI- 114
           +  ++   GQ  + +  +   RG  G + V D        +  S        A   +++ 
Sbjct: 75  RFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLD 134

Query: 115 ---MLVG-NKCDLAHRRAVSKEE-GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
              +++  NK DL    A+  E        E     LEA A   + V E   + +  +L 
Sbjct: 135 DVPIVIQVNKRDLPD--ALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLA 192

Query: 170 NIQEGA 175
            +  G+
Sbjct: 193 RVAGGS 198

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 71.9 bits (176), Expect = 7e-16
 Identities = 37/177 (20%), Positives = 62/177 (35%), Gaps = 18/177 (10%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRP-IKLQIWDTAGQE 66
           + +++G    GKS +      K   P   L +          I     +  QIWD  GQ 
Sbjct: 22  RILLMGLRRSGKSSIQKVVFHK-MSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQM 80

Query: 67  SFRSIT---RSYYRGAAGALLVYDITRR--ETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
            F   T      +RG    + V D      E    L   +  A +  NP+M+  +  +K 
Sbjct: 81  DFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-NPDMNFEVFIHKV 139

Query: 122 DLAH-------RRAVSKEEGEQFAK---ENGLLFLEASARTAQNVEEAFIKTAAKIL 168
           D          +R + +   +  A    E   L    ++    ++ EAF K   K++
Sbjct: 140 DGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDHSIFEAFSKVVQKLI 196

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 73.5 bits (180), Expect = 8e-16
 Identities = 29/197 (14%), Positives = 70/197 (35%), Gaps = 21/197 (10%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID-GRPIKLQIWDTAGQE 66
           K +++G +G GKS +        +       +G         +     + L +WD  GQ+
Sbjct: 5   KLLLMGRSGSGKSSMR-SIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQD 63

Query: 67  SF-----RSITRSYYRGAAGALLVYDITRRETFN---HLSSWLEDARQHANPNMSIMLVG 118
            F            ++     + V+D+   E        +  L+  R++ +P+  I ++ 
Sbjct: 64  VFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKY-SPDAKIFVLL 122

Query: 119 NKCDL--AHRRAVSKEEGEQFAKEN------GLLFLEASARTAQNVEEAFIKTAAKILQN 170
           +K DL    +R    +   +   E         L    ++   +++ +A+ +    ++ N
Sbjct: 123 HKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDESLYKAWSQIVCSLIPN 182

Query: 171 IQ--EGALDAVNDQSGI 185
           +   +  L    +    
Sbjct: 183 MSNHQSNLKKFKEIMNA 199

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 61.1 bits (149), Expect = 4e-12
 Identities = 30/162 (18%), Positives = 60/162 (37%), Gaps = 19/162 (11%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIG--VEFGARMVTIDGRPIKLQIWDTAGQE 66
           + +G    GK+ ++ +      Q  + L TIG  +E            +   ++D +GQ 
Sbjct: 25  LCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIE------KFKSSSLSFTVFDMSGQG 78

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQH---ANPNMSIMLVGNKCDL 123
            +R++   YY+     + V D + R         L+    H    +  + I+   NK DL
Sbjct: 79  RYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDL 138

Query: 124 AHRRAVSKEE-GEQFA----KENGLLFLEASARTAQNVEEAF 160
               AV+  +  +       K+       + A   + ++E  
Sbjct: 139 RD--AVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGV 178

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 60.3 bits (147), Expect = 7e-12
 Identities = 38/167 (22%), Positives = 64/167 (38%), Gaps = 33/167 (19%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIG--VEFGARMVTIDGRPIKLQIWDTAGQE 66
           +I+G  G GK+ +L +      + V  + TIG  VE      T+  + +K Q+WD  G  
Sbjct: 11  LILGLDGAGKTTILYRLQVG--EVVTTIPTIGFNVE------TVTYKNLKFQVWDLGGLT 62

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQH-----ANPNMS--IMLV-G 118
           S R   R YY      + V D   R+        +  ++           +   I++V  
Sbjct: 63  SIRPYWRCYYSNTDAVIYVVDSCDRD-------RIGISKSELVAMLEEEELRKAILVVFA 115

Query: 119 NKCDLAHRRAVSKEE-GEQFA----KENGLLFLEASARTAQNVEEAF 160
           NK D+    A++  E          K+      + SA     ++EA 
Sbjct: 116 NKQDMEQ--AMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAM 160

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 60.7 bits (148), Expect = 8e-12
 Identities = 33/167 (19%), Positives = 59/167 (35%), Gaps = 33/167 (19%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRF---QPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +++G    GK+ +L +          P    T+G       +      I  ++WD  GQ 
Sbjct: 26  LMLGLDNAGKTSILYRLHLGDVVTTVP----TVG--VNLETLQYKN--ISFEVWDLGGQT 77

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQH-----ANPNMS--IMLV-G 118
             R   R Y+      + V D T R+        +  A+           +   ++L+  
Sbjct: 78  GVRPYWRCYFSDTDAVIYVVDSTDRD-------RMGVAKHELYALLDEDELRKSLLLIFA 130

Query: 119 NKCDLAHRRAVSKEE-GEQFA----KENGLLFLEASARTAQNVEEAF 160
           NK DL    A S+ E  EQ             +++S++T   + E  
Sbjct: 131 NKQDLPD--AASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGM 175

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 61.6 bits (149), Expect = 1e-11
 Identities = 34/192 (17%), Positives = 71/192 (36%), Gaps = 20/192 (10%)

Query: 11  IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS 70
           ++G    GKS +         QP+  L +       +       I L + +  GQ ++  
Sbjct: 4   LMGVRRCGKSSICKVVFHN-MQPLDTLYLESTSNPSLEHFST-LIDLAVMELPGQLNYFE 61

Query: 71  ---ITRSYYRGAAGALLVYDITR--RETFNHLSSWLEDARQHANPNMSIMLVGNKCDL-- 123
               +   ++     + V D          +L+  +E A +  NP+++I ++ +K D   
Sbjct: 62  PSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIHKVDGLS 120

Query: 124 -----AHRRAVSKEEGEQFAKENGLLFLEASART---AQNVEEAFIKTAAKILQNIQ--E 173
                  +R + +  GE+  +        +   T     ++ EAF +   K++  +   E
Sbjct: 121 EDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFDHSIYEAFSRIVQKLIPELSFLE 180

Query: 174 GALDAVNDQSGI 185
             LD +   S I
Sbjct: 181 NMLDNLIQHSKI 192

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 60.0 bits (146), Expect = 1e-11
 Identities = 41/178 (23%), Positives = 68/178 (38%), Gaps = 25/178 (14%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIG--VEFGARMVTIDGRPIKLQIWDTA 63
            K II+G    GK+ +L QF     + VH   TIG  VE       I     +  +WD  
Sbjct: 17  HKVIIVGLDNAGKTTILYQF--SMNEVVHTSPTIGSNVE------EIVINNTRFLMWDIG 68

Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFN----HLSSWLEDARQHANPNMSIMLVGN 119
           GQES RS   +YY      ++V D T RE  +     L   L            +++  N
Sbjct: 69  GQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED---LRKAGLLIFAN 125

Query: 120 KCDLAHRRAVSKEE-GEQFA----KENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 172
           K D+     ++  E  +       K++        A T + + +      +++   ++
Sbjct: 126 KQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIRLE 181

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 59.6 bits (145), Expect = 2e-11
 Identities = 43/163 (26%), Positives = 69/163 (42%), Gaps = 19/163 (11%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIG--VEFGARMVTIDGRPIKLQIWDTA 63
            + +I+G  G GK+ +L +   +  + V    TIG  VE      T+  + +KL +WD  
Sbjct: 19  LRILILGLDGAGKTTILYRL--QIGEVVTTKPTIGFNVE------TLSYKNLKLNVWDLG 70

Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLV-GNKCD 122
           GQ S R   R YY   A  + V D T ++  +  S  L    Q      + +LV  NK D
Sbjct: 71  GQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQD 130

Query: 123 LAHRRAVSKEE-GEQFA----KENGLLFLEASARTAQNVEEAF 160
                A+S  E  ++      K+     + +SA   + + E  
Sbjct: 131 QPG--ALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGL 171

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 59.2 bits (144), Expect = 2e-11
 Identities = 36/172 (20%), Positives = 69/172 (40%), Gaps = 24/172 (13%)

Query: 3   YDYLF-----KYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIG--VEFGARMVTIDGRP 54
           +  +F     + +++G    GK+ +L +   K  + V  + TIG  VE      T++ + 
Sbjct: 21  FSRIFGKKQMRILMVGLDAAGKTTILYKL--KLGEIVTTIPTIGFNVE------TVEYKN 72

Query: 55  IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSI 114
           I   +WD  GQ+  R + R Y++   G + V D   RE     +  L+   Q      ++
Sbjct: 73  ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV 132

Query: 115 MLV-GNKCDLAHRRAVSKEE-GEQFA----KENGLLFLEASARTAQNVEEAF 160
           +LV  NK D+ +  A+   E  ++      +          A     + +  
Sbjct: 133 LLVFANKQDMPN--AMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGL 182

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 58.7 bits (143), Expect = 2e-11
 Identities = 36/163 (22%), Positives = 66/163 (40%), Gaps = 25/163 (15%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIG--VEFGARMVTIDGRPIKLQIWDTAGQE 66
           +++G    GK+ +L +   K  + V  + TIG  VE      T++ + I   +WD  GQ+
Sbjct: 4   LMVGLDAAGKTTILYKL--KLGEIVTTIPTIGFNVE------TVEYKNISFTVWDVGGQD 55

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFN----HLSSWLEDARQHANPNMSIMLVGNKCD 122
             R + R Y++   G + V D   RE  N     L   L +       +  +++  NK D
Sbjct: 56  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDE---LRDAVLLVFANKQD 112

Query: 123 LAHRRAVSKEE-GEQFA----KENGLLFLEASARTAQNVEEAF 160
           L +  A++  E  ++      +          A +   + E  
Sbjct: 113 LPN--AMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 58.0 bits (141), Expect = 7e-11
 Identities = 39/163 (23%), Positives = 66/163 (40%), Gaps = 25/163 (15%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIG--VEFGARMVTIDGRPIKLQIWDTAGQE 66
           +++G    GK+ +L +F            T+G  ++      T++ R  KL IWD  GQ+
Sbjct: 22  LMLGLDNAGKTTILKKF--NGEDVDTISPTLGFNIK------TLEHRGFKLNIWDVGGQK 73

Query: 67  SFRSITRSYYRGAAGALLVYDITRR----ETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           S RS  R+Y+    G + V D   R    +    L S L + R       ++++  NK D
Sbjct: 74  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEER---LAGATLLIFANKQD 130

Query: 123 LAHRRAVSKEE-GEQFA----KENGLLFLEASARTAQNVEEAF 160
           L    A+S     E       + +       SA T +++    
Sbjct: 131 LPG--ALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGI 171

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 57.6 bits (140), Expect = 8e-11
 Identities = 42/163 (25%), Positives = 65/163 (39%), Gaps = 19/163 (11%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIG--VEFGARMVTIDGRPIKLQIWDTA 63
            K II+G    GK+ +L QF     + VH   TIG  VE       I     +  +WD  
Sbjct: 22  HKVIIVGLDNAGKTTILYQF--SMNEVVHTSPTIGSNVE------EIVINNTRFLMWDIG 73

Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLV-GNKCD 122
           GQES RS   +YY      ++V D T RE  +     L     H +   + +L+  NK D
Sbjct: 74  GQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQD 133

Query: 123 LAHRRAVSKEE-GEQFA----KENGLLFLEASARTAQNVEEAF 160
           +     ++  E  +       K++        A T + + +  
Sbjct: 134 VKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGL 174

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 55.9 bits (135), Expect = 4e-10
 Identities = 25/133 (18%), Positives = 41/133 (30%), Gaps = 17/133 (12%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR 69
           II G    GK+ LL   T    +P    +        +   D     + + D  G    R
Sbjct: 52  IIAGPQNSGKTSLLTLLTTDSVRPTVV-SQE-----PLSAADYDGSGVTLVDFPGHVKLR 105

Query: 70  SITRSYYRGAAGAL--LVY------DITR-RETFNHLSSWLEDARQHANPNMSIMLVGNK 120
                Y +  A  +  L++      D  +   T   L   L          + I++  NK
Sbjct: 106 YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNK 165

Query: 121 CDLAHRRAVSKEE 133
            +L    A    +
Sbjct: 166 SELFT--ARPPSK 176

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 55.9 bits (135), Expect = 5e-10
 Identities = 24/133 (18%), Positives = 41/133 (30%), Gaps = 17/133 (12%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR 69
           II G    GK+ LL   T    +P    +        +   D     + + D  G    R
Sbjct: 16  IIAGPQNSGKTSLLTLLTTDSVRPTVV-SQE-----PLSAADYDGSGVTLVDFPGHVKLR 69

Query: 70  SITRSYYRGAAGAL--LVY-----DITRR--ETFNHLSSWLEDARQHANPNMSIMLVGNK 120
                Y +  A  +  L++        ++   T   L   L          + I++  NK
Sbjct: 70  YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNK 129

Query: 121 CDLAHRRAVSKEE 133
            +L    A    +
Sbjct: 130 SELFT--ARPPSK 140

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 55.3 bits (134), Expect = 7e-10
 Identities = 29/123 (23%), Positives = 48/123 (39%), Gaps = 20/123 (16%)

Query: 18  GKSCLLLQFTDKRF---QPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRS 74
           GK+ LL    + R    QP    T      +  + I    IK   +D  G    R + + 
Sbjct: 35  GKTTLLHMLKNDRLATLQP----TWH--PTSEELAIGN--IKFTTFDLGGHIQARRLWKD 86

Query: 75  YYRGAAGALLVYDITRRETFN----HLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS 130
           Y+    G + + D    E F+     L +    A      ++  +++GNK D  +  AVS
Sbjct: 87  YFPEVNGIVFLVDAADPERFDEARVELDALFNIAE---LKDVPFVILGNKIDAPN--AVS 141

Query: 131 KEE 133
           + E
Sbjct: 142 EAE 144

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 54.5 bits (132), Expect = 1e-09
 Identities = 36/167 (21%), Positives = 59/167 (35%), Gaps = 33/167 (19%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIG--VEFGARMVTIDGRPIKLQIWDTAGQE 66
           +++G    GK+ LL Q         H   T G  ++      ++  +  KL +WD  GQ 
Sbjct: 20  LLLGLDNAGKTTLLKQL--ASEDISHITPTQGFNIK------SVQSQGFKLNVWDIGGQR 71

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQH-----ANPNMS---IMLVG 118
             R   RSY+      + V D   R+         E+  Q          +S   +++  
Sbjct: 72  KIRPYWRSYFENTDILIYVIDSADRK-------RFEETGQELTELLEEEKLSCVPVLIFA 124

Query: 119 NKCDLAHRRAVSKEE-GEQFA----KENGLLFLEASARTAQNVEEAF 160
           NK DL    A    E  E       ++        SA T + V++  
Sbjct: 125 NKQDLLT--AAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGM 169

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 54.6 bits (132), Expect = 1e-09
 Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 20/123 (16%)

Query: 18  GKSCLLLQFTDKRF---QPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRS 74
           GK+ LL    D R     P    T+     +  +TI G  +    +D  G    R + ++
Sbjct: 37  GKTTLLHMLKDDRLGQHVP----TLH--PTSEELTIAG--MTFTTFDLGGHIQARRVWKN 88

Query: 75  YYRGAAGALLVYDITRRETFN----HLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS 130
           Y     G + + D    E        L S + D       N+ I+++GNK D     A+S
Sbjct: 89  YLPAINGIVFLVDCADHERLLESKEELDSLMTDET---IANVPILILGNKIDRPE--AIS 143

Query: 131 KEE 133
           +E 
Sbjct: 144 EER 146

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 54.9 bits (132), Expect = 3e-09
 Identities = 36/172 (20%), Positives = 68/172 (39%), Gaps = 25/172 (14%)

Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIG--VEFGARMVTIDGRPIKL 57
           +      + +++G    GK+ +L +   K  + V  + TIG  VE      T++ + I  
Sbjct: 160 LFGKKEMRILMVGLDAAGKTTILYKL--KLGEIVTTIPTIGFNVE------TVEYKNISF 211

Query: 58  QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFN----HLSSWLEDARQHANPNMS 113
            +WD  GQ+  R + R Y++   G + V D   RE  N     L   L +       +  
Sbjct: 212 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDE---LRDAV 268

Query: 114 IMLVGNKCDLAHRRAVSKEE-GEQFA----KENGLLFLEASARTAQNVEEAF 160
           +++  NK DL +  A++  E  ++      +          A +   + E  
Sbjct: 269 LLVFANKQDLPN--AMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 318

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 53.3 bits (129), Expect = 3e-09
 Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 7/97 (7%)

Query: 38  TIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL 97
           T+G  F  R +T     + +++WD  GQ  FRS+   Y RG +  + + D   +E     
Sbjct: 54  TVG--FNMRKITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEAS 109

Query: 98  SSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVSKEE 133
            + L +         + ++++GNK DL    A+ ++E
Sbjct: 110 KNELHNLLDKPQLQGIPVLVLGNKRDLPG--ALDEKE 144

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 49.0 bits (117), Expect = 2e-07
 Identities = 27/130 (20%), Positives = 50/130 (38%), Gaps = 11/130 (8%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR 69
           + +G    GK+ L ++    +++     +I     A     + R   L + D  G ES R
Sbjct: 11  LFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSS-AIYKVNNNRGNSLTLIDLPGHESLR 68

Query: 70  -SITRSYYRGAAGALLVYDIT-----RRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 123
             +   +   A   + V D        ++    L   L D+    N + S+++  NK D+
Sbjct: 69  FQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKN-SPSLLIACNKQDI 127

Query: 124 AHRRAVSKEE 133
           A   A S + 
Sbjct: 128 AM--AKSAKL 135

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Length = 172

 Score = 43.3 bits (103), Expect = 1e-05
 Identities = 28/124 (22%), Positives = 48/124 (38%), Gaps = 28/124 (22%)

Query: 48  VTIDGRPIKLQIWDTAG-------------QESFRSITRSYYRGAAGALLVYDITRRETF 94
           + IDG P+ + I DTAG             + +++ I +     A   L + D T  +  
Sbjct: 47  IHIDGMPLHI-I-DTAGLREASDEVERIGIERAWQEIEQ-----ADRVLFMVDGTTTDAV 99

Query: 95  NHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQ 154
           +    W  +        + I +V NK D+         E    ++ NG   +  SART +
Sbjct: 100 DPAEIW-PEFIARLPAKLPITVVRNKADIT-------GETLGMSEVNGHALIRLSARTGE 151

Query: 155 NVEE 158
            V+ 
Sbjct: 152 GVDV 155

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 5e-05
 Identities = 30/165 (18%), Positives = 47/165 (28%), Gaps = 39/165 (23%)

Query: 8   KYIII-GDTGVGKSCLLLQ-FTDKRFQ-----PVHDLTIGVEFGARMV---------TID 51
           K ++I G  G GK+ + L      + Q      +  L +        V          ID
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210

Query: 52  ---------GRPIKLQIWDTAGQESFRSI--TRSYYRGAAGALL----VYDITRRETFNH 96
                       IKL+I     Q   R +  ++ Y       LL    V +      FN 
Sbjct: 211 PNWTSRSDHSSNIKLRIHSI--QAELRRLLKSKPYEN----CLLVLLNVQNAKAWNAFNL 264

Query: 97  LSSWLEDARQHANPNMSIMLVGNKCDLAHRR-AVSKEEGEQ-FAK 139
               L   R     +           L H    ++ +E +    K
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 20/124 (16%), Positives = 32/124 (25%), Gaps = 25/124 (20%)

Query: 48  VTIDGRPIKLQIWDTAG-------------QESFRSITRSYYRGAAGALLVYDITRRETF 94
              D      ++ DTAG             + S   +       A   L + D+      
Sbjct: 276 FIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKMAE-----ADLILYLLDLGTERLD 328

Query: 95  NHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQ 154
           + L+   E    H  P    + V NK D A                     +  SA    
Sbjct: 329 DELTEIRELKAAH--PAAKFLTVANKLDRAANADALIRAIADGTGTE---VIGISALNGD 383

Query: 155 NVEE 158
            ++ 
Sbjct: 384 GIDT 387

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	211
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	100.0
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	100.0
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	100.0
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	100.0
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	100.0
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	100.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	100.0
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	100.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	100.0
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	100.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	100.0
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	100.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	100.0
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	100.0
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	100.0
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	100.0
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	100.0
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	100.0
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	100.0
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	100.0
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	100.0
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	100.0
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	100.0
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	100.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	100.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	100.0
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	100.0
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	100.0
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	100.0
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	100.0
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	100.0
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	100.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	100.0
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	100.0
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	100.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	100.0
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	100.0
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	100.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	100.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	100.0
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	100.0
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	100.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	100.0
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	100.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	100.0
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	100.0
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	100.0
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	100.0
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	100.0
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	100.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	100.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	100.0
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	100.0
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	100.0
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	100.0
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	100.0
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	100.0
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.98
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.98
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.98
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.98
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.98
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.98
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.98
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.98
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.97
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.97
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.97
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.97
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.97
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.97
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.97
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.97
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.97
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.96
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.96
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.96
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.96
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.96
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.96
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.96
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.96
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.96
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.96
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.96
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.96
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.96
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.96
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.96
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.92
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.96
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.95
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.95
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.95
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.95
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.94
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.94
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.94
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.94
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.94
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.93
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.93
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.93
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.93
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.93
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.93
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.93
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.93
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.92
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.92
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.92
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.92
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.91
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.91
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.9
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.9
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.89
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.89
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.89
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.89
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.89
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.88
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.87
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.87
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.87
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.87
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.87
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.87
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.87
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.86
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.86
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.86
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.86
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.86
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.86
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.85
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.85
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.85
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.85
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.85
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.85
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.85
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.85
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.85
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.84
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.84
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.84
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.84
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.83
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.83
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.83
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.83
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.83
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.83
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.82
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.82
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.82
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.81
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.8
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.8
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.8
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.79
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.79
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.78
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.78
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.77
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.77
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.76
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.76
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.76
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.76
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.75
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.74
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.74
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.73
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.72
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.72
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.72
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.71
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.71
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.7
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.66
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.65
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.64
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.62
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.6
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.58
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.58
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.58
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.58
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.55
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.52
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.5
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.48
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.47
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.45
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.43
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.39
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.36
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.36
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.33
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.27
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.15
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.05
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.96
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.95
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.92
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.89
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.86
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.81
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.79
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.75
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.59
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.53
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.4
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.37
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.2
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.19
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.17
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.13
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.05
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.03
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.93
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.85
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.79
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.58
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.47
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.34
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.33
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.33
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.3
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.29
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.27
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.26
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.24
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.21
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.2
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.19
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.18
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.16
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.16
2xxa_A	433	Signal recognition particle protein; protein trans	97.14
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.14
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.14
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.09
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.08
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.05
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.02
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.02
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.01
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.0
1sgw_A	214	Putative ABC transporter; structural genomics, P p	96.98
1b0u_A	262	Histidine permease; ABC transporter, transport pro	96.96
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	96.96
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	96.93
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	96.92
1g6h_A	257	High-affinity branched-chain amino acid transport	96.92
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.92
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	96.91
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.91
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.9
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	96.9
1ji0_A	240	ABC transporter; ATP binding protein, structural g	96.9
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	96.9
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.89
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	96.89
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.88
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.88
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	96.87
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.87
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.86
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.85
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.84
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.84
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.84
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.83
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.82
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.81
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.79
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.79
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.79
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.78
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.75
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.74
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.72
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.71
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.7
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.69
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.68
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.68
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.68
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.68
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.67
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.66
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.66
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.65
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.65
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.65
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.64
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.64
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.63
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.62
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.6
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.59
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.59
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.59
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.58
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.58
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.57
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.57
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.56
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.56
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.55
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.55
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.54
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.53
3co5_A	143	Putative two-component system transcriptional RES	96.53
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.51
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.51
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.51
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.5
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.5
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.5
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.49
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.47
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.47
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.44
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.44
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.44
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.43
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.42
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.4
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.39
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.39
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.38
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.38
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.38
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.38
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.37
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.37
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.37
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.37
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.36
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.36
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.35
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.35
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.34
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.33
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.33
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.32
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.31
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.31
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.3
1via_A	175	Shikimate kinase; structural genomics, transferase	96.3
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.29
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.27
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.27
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.24
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.23
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.22
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.21
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.18
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.18
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.18
2og2_A	359	Putative signal recognition particle receptor; nuc	96.17
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.16
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.15
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.14
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.14
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.14
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.14
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.13
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.11
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.1
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.1
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.08
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.08
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.06
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.06
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.05
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.04
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.04
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.02
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.01
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.01
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.01
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.0
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.0
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.0
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	95.97
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	95.96
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.96
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	95.95
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	95.92
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	95.92
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	95.91
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	95.9
2cvh_A	220	DNA repair and recombination protein RADB; filamen	95.87
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	95.86
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.86
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	95.85
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	95.83
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	95.82
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	95.81
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	95.8
3uc9_A	233	Increased recombination centers protein 6; rossman	95.79
3bos_A	242	Putative DNA replication factor; P-loop containing	95.78
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	95.78
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.75
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	95.74
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	95.73
2vli_A	183	Antibiotic resistance protein; transferase, tunica	95.72
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	95.71
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.7
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.66
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	95.65
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	95.65
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	95.64
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.64
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.59
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.59
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	95.54
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	95.52
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	95.52
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	95.47
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	95.43
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	95.42
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	95.41
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	95.41
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.39
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	95.38
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	95.37
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	95.36
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	95.35
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	95.34
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	95.32
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	95.31
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	95.31
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	95.29
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	95.23
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	95.22
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	95.2
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.15
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.15
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.14
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	95.11
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.11
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	95.1
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	95.09
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	95.09
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	95.09
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	95.08
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	95.07
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	95.05
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	95.04
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	95.04
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	95.0
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	94.98
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	94.98
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	94.95
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	94.94
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	94.93
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	94.93
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	94.89
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	94.88
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	94.85
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	94.85
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	94.83
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	94.83
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	94.81
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	94.8
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	94.8
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	94.76
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	94.75
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	94.75
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	94.69
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	94.67
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	94.64
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	94.6
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	94.58
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	94.57
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	94.54
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	94.51
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	94.51
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	94.5
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	94.5
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	94.48
2qgz_A	308	Helicase loader, putative primosome component; str	94.48
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	94.48
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	94.45
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	94.42

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=2.7e-42  Score=259.32  Aligned_cols=167  Identities=41%  Similarity=0.706  Sum_probs=146.6

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      +.+||+|+|++|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.||||+|++++..++..+++.+|++|+
T Consensus        12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~il   91 (216)
T 4dkx_A           12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVV   91 (216)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEE
T ss_pred             CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEE
Confidence            56899999999999999999999999999999999999999989999999999999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Q 028251           85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA  164 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~  164 (211)
                      |||++++.+|.++..|+..+......+.|++||+||+|+.+.+.++.+++.+++...++.|+++||++|.||+++|+.|.
T Consensus        92 v~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~  171 (216)
T 4dkx_A           92 VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA  171 (216)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred             EeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHH
Confidence            99999999999999999999888778899999999999988888999999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 028251          165 AKILQNI  171 (211)
Q Consensus       165 ~~~~~~~  171 (211)
                      +.+....
T Consensus       172 ~~i~~~~  178 (216)
T 4dkx_A          172 AALPGME  178 (216)
T ss_dssp             HHC----
T ss_pred             HHHHhhh
Confidence            8886543

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=100.00  E-value=1.1e-37  Score=232.64  Aligned_cols=177  Identities=48%  Similarity=0.875  Sum_probs=160.8

Q ss_pred             CC--CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhcc
Q 028251            1 MS--YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG   78 (211)
Q Consensus         1 m~--~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~   78 (211)
                      |+  +++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.
T Consensus         1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   80 (206)
T 2bcg_Y            1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRG   80 (206)
T ss_dssp             --CCCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTT
T ss_pred             CCcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccC
Confidence            54  6788999999999999999999999999988888888988888888899999999999999999999999999999


Q ss_pred             ccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Q 028251           79 AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEE  158 (211)
Q Consensus        79 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  158 (211)
                      +|++|+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|+++
T Consensus        81 ~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~  160 (206)
T 2bcg_Y           81 SHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVED  160 (206)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHH
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence            99999999999999999999999999887767899999999999987777888889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcccc
Q 028251          159 AFIKTAAKILQNIQEGALD  177 (211)
Q Consensus       159 ~~~~i~~~~~~~~~~~~~~  177 (211)
                      +|++|.+.+.+........
T Consensus       161 l~~~l~~~i~~~~~~~~~~  179 (206)
T 2bcg_Y          161 AFLTMARQIKESMSQQNLN  179 (206)
T ss_dssp             HHHHHHHHHHHHCCHHHHH
T ss_pred             HHHHHHHHHHHHHhhcccc
Confidence            9999999998876655433

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-37  Score=233.87  Aligned_cols=178  Identities=49%  Similarity=0.841  Sum_probs=148.5

Q ss_pred             CCCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhcccc
Q 028251            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA   80 (211)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d   80 (211)
                      |.+++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||||++.+..++..+++.+|
T Consensus         8 ~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   87 (223)
T 3cpj_B            8 YDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAV   87 (223)
T ss_dssp             --CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCC
T ss_pred             CCCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCC
Confidence            45678899999999999999999999999998888888888888888889998899999999999999999999999999


Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHH
Q 028251           81 GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF  160 (211)
Q Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~  160 (211)
                      ++|+|||++++.++..+..|+..+......+.|++||+||+|+.+.+.+..+++..++...+++++++||+++.|++++|
T Consensus        88 ~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  167 (223)
T 3cpj_B           88 GALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAF  167 (223)
T ss_dssp             EEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHH
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999999999887766689999999999998767778888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccccc
Q 028251          161 IKTAAKILQNIQEGALDA  178 (211)
Q Consensus       161 ~~i~~~~~~~~~~~~~~~  178 (211)
                      ++|.+.+.++........
T Consensus       168 ~~l~~~i~~~~~~~~~~~  185 (223)
T 3cpj_B          168 EELINTIYQKVSKHQMDL  185 (223)
T ss_dssp             HHHHHHHTTCC-------
T ss_pred             HHHHHHHHHHhhhcccCc
Confidence            999999988777665544

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=100.00  E-value=7e-35  Score=215.53  Aligned_cols=176  Identities=51%  Similarity=0.910  Sum_probs=159.1

Q ss_pred             CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028251            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      +++.++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus        13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   92 (196)
T 3tkl_A           13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   92 (196)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEE
T ss_pred             cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEE
Confidence            45789999999999999999999999999888888889999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Q 028251           83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK  162 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  162 (211)
                      |+|||++++.++..+..|+..+......+.|+++|+||+|+.+......++...++...+++++++||+++.|++++|++
T Consensus        93 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~  172 (196)
T 3tkl_A           93 IVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMT  172 (196)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999998887778999999999999888888888999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccccc
Q 028251          163 TAAKILQNIQEGALDA  178 (211)
Q Consensus       163 i~~~~~~~~~~~~~~~  178 (211)
                      |.+.+.++........
T Consensus       173 l~~~i~~~~~~~~~~~  188 (196)
T 3tkl_A          173 MAAEIKKRMGPGATAG  188 (196)
T ss_dssp             HHHHHHHHC-------
T ss_pred             HHHHHHHHhccccccC
Confidence            9999988776554433

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=100.00  E-value=1.3e-34  Score=215.67  Aligned_cols=170  Identities=35%  Similarity=0.530  Sum_probs=151.5

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ...++|+|+|++|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+||+||++.+..++..++..+|++|
T Consensus        12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i   90 (206)
T 2bov_A           12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   90 (206)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEE-EEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence            35789999999999999999999999988877777666654 45678888899999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Q 028251           84 LVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK  162 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  162 (211)
                      +|||++++.++..+..|+..+..... .+.|+++|+||+|+.+...+..+++..++...+++++++||++|.|++++|++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  170 (206)
T 2bov_A           91 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFD  170 (206)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999998877653 58999999999999877778888999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhc
Q 028251          163 TAAKILQNIQEG  174 (211)
Q Consensus       163 i~~~~~~~~~~~  174 (211)
                      |.+.+.++....
T Consensus       171 l~~~i~~~~~~~  182 (206)
T 2bov_A          171 LMREIRARKMED  182 (206)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHccccc
Confidence            999998765433

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=100.00  E-value=6.7e-35  Score=217.52  Aligned_cols=171  Identities=39%  Similarity=0.671  Sum_probs=151.1

Q ss_pred             CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028251            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      .++.++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (207)
T 1vg8_A            5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC   84 (207)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence            35789999999999999999999999998888888888888888888888889999999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcC----CCCeEEEEEecCCCCCCCCCCHHHHHHHHH-HcCCcEEEEeCCCCCCHH
Q 028251           83 LLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-ENGLLFLEASARTAQNVE  157 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~i~  157 (211)
                      |+|||++++.++..+..|+..+.....    .+.|+++|+||+|+. ......++...++. ..+++++++||++|.|++
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  163 (207)
T 1vg8_A           85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINVE  163 (207)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence            999999999999999999888866543    478999999999997 44566777888887 567899999999999999


Q ss_pred             HHHHHHHHHHHHHHhhc
Q 028251          158 EAFIKTAAKILQNIQEG  174 (211)
Q Consensus       158 ~~~~~i~~~~~~~~~~~  174 (211)
                      ++|++|.+.+.++....
T Consensus       164 ~l~~~l~~~~~~~~~~~  180 (207)
T 1vg8_A          164 QAFQTIARNALKQETEV  180 (207)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccc
Confidence            99999999998877644

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=100.00  E-value=3e-34  Score=210.44  Aligned_cols=176  Identities=60%  Similarity=0.999  Sum_probs=159.5

Q ss_pred             CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028251            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      +++.++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus         7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   86 (186)
T 2bme_A            7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA   86 (186)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEE
Confidence            45789999999999999999999999999888888888888888888999889999999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Q 028251           83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK  162 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  162 (211)
                      |+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|++
T Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  166 (186)
T 2bme_A           87 LLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQ  166 (186)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence            99999999999999999999888776678999999999999776778888899999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccccc
Q 028251          163 TAAKILQNIQEGALDA  178 (211)
Q Consensus       163 i~~~~~~~~~~~~~~~  178 (211)
                      |.+.+.++.+.....+
T Consensus       167 l~~~~~~~~~~~~~~~  182 (186)
T 2bme_A          167 CARKILNKIESGELDP  182 (186)
T ss_dssp             HHHHHHHHHHSCC---
T ss_pred             HHHHHHHHhhhcCCCc
Confidence            9999998877655443

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.3e-34  Score=215.36  Aligned_cols=177  Identities=59%  Similarity=0.987  Sum_probs=150.2

Q ss_pred             CCCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhcccc
Q 028251            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA   80 (211)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d   80 (211)
                      |++++.++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+|
T Consensus        20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d   99 (200)
T 2o52_A           20 IWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAA   99 (200)
T ss_dssp             --CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCS
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCC
Confidence            46788999999999999999999999999888888888888888888889998899999999999999999999999999


Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHH
Q 028251           81 GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF  160 (211)
Q Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~  160 (211)
                      ++|+|||++++.++..+..|+..+......+.|+++|+||+|+.+...+..+++..++...+++++++||++|.|++++|
T Consensus       100 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~  179 (200)
T 2o52_A          100 GALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAF  179 (200)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999999999887766789999999999997767778888899999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcccc
Q 028251          161 IKTAAKILQNIQEGALD  177 (211)
Q Consensus       161 ~~i~~~~~~~~~~~~~~  177 (211)
                      ++|.+.+.++.......
T Consensus       180 ~~l~~~i~~~~~~~~~~  196 (200)
T 2o52_A          180 LKCARTILNKIDSGELD  196 (200)
T ss_dssp             HHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHHhcCCCC
Confidence            99999999887765543

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=100.00  E-value=5.7e-35  Score=213.87  Aligned_cols=173  Identities=47%  Similarity=0.929  Sum_probs=129.4

Q ss_pred             CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028251            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      ++++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus         4 ~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (183)
T 2fu5_C            4 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   83 (183)
T ss_dssp             CCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSE
T ss_pred             ccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCE
Confidence            46788999999999999999999999888877777888888888888889999999999999999999999999999999


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028251           82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  161 (211)
                      +|+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|+
T Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  163 (183)
T 2fu5_C           84 IMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFF  163 (183)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999998887666899999999999987777888889999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhc
Q 028251          162 KTAAKILQNIQEG  174 (211)
Q Consensus       162 ~i~~~~~~~~~~~  174 (211)
                      +|.+.+.++..+.
T Consensus       164 ~l~~~i~~~~~~~  176 (183)
T 2fu5_C          164 TLARDIKAKMDKN  176 (183)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcc
Confidence            9999998876643

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=100.00  E-value=6.4e-34  Score=211.73  Aligned_cols=174  Identities=41%  Similarity=0.781  Sum_probs=160.4

Q ss_pred             CCCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhcccc
Q 028251            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA   80 (211)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d   80 (211)
                      |.+++.++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus         3 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   82 (203)
T 1zbd_A            3 HMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAM   82 (203)
T ss_dssp             CSCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCS
T ss_pred             cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCC
Confidence            46788999999999999999999999999988888888888888888888999999999999999999999999999999


Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHH
Q 028251           81 GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF  160 (211)
Q Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~  160 (211)
                      ++|+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|
T Consensus        83 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  162 (203)
T 1zbd_A           83 GFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTF  162 (203)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHH
Confidence            99999999999999999999999887766689999999999998777788888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhc
Q 028251          161 IKTAAKILQNIQEG  174 (211)
Q Consensus       161 ~~i~~~~~~~~~~~  174 (211)
                      ++|.+.+.++.+..
T Consensus       163 ~~l~~~i~~~~~~~  176 (203)
T 1zbd_A          163 ERLVDVICEKMSES  176 (203)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999998877654

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.2e-34  Score=213.50  Aligned_cols=171  Identities=47%  Similarity=0.849  Sum_probs=157.7

Q ss_pred             CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028251            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      .+++.++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus        22 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~  101 (201)
T 2ew1_A           22 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANA  101 (201)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSE
T ss_pred             ccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCE
Confidence            46788999999999999999999999999888888888999988888999999999999999999999999999999999


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028251           82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  161 (211)
                      +|+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+
T Consensus       102 ~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~  181 (201)
T 2ew1_A          102 LILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFL  181 (201)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999998887767899999999999987677788888899988999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 028251          162 KTAAKILQNIQ  172 (211)
Q Consensus       162 ~i~~~~~~~~~  172 (211)
                      +|.+.+.++..
T Consensus       182 ~l~~~i~~~~~  192 (201)
T 2ew1_A          182 DLACRLISEAR  192 (201)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHHh
Confidence            99999987654

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=2.3e-34  Score=214.19  Aligned_cols=171  Identities=44%  Similarity=0.818  Sum_probs=148.2

Q ss_pred             CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028251            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      ++++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|+
T Consensus        25 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  104 (201)
T 2hup_A           25 QYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANG  104 (201)
T ss_dssp             -CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSE
T ss_pred             ccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCE
Confidence            56788999999999999999999999999888777888888888888889988999999999999999999999999999


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEeCCCCCCHHHHH
Q 028251           82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAF  160 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~  160 (211)
                      +|+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...++ +++++||+++.|++++|
T Consensus       105 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~  184 (201)
T 2hup_A          105 AILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAF  184 (201)
T ss_dssp             EEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999999998887667899999999999987677888899999999999 89999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 028251          161 IKTAAKILQNIQ  172 (211)
Q Consensus       161 ~~i~~~~~~~~~  172 (211)
                      ++|.+.+.++..
T Consensus       185 ~~l~~~i~~~~~  196 (201)
T 2hup_A          185 LRVATELIMRHG  196 (201)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcc
Confidence            999999877654

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=100.00  E-value=4.8e-34  Score=210.64  Aligned_cols=171  Identities=81%  Similarity=1.255  Sum_probs=153.5

Q ss_pred             CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028251            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      +++.++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   97 (191)
T 2a5j_A           18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA   97 (191)
T ss_dssp             TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEE
Confidence            46789999999999999999999999998888888888888888888999999999999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Q 028251           83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK  162 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  162 (211)
                      |+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|++
T Consensus        98 i~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  177 (191)
T 2a5j_A           98 LLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFIN  177 (191)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999988876678999999999999876777888899999999999999999999999999999


Q ss_pred             HHHHHHHHHhh
Q 028251          163 TAAKILQNIQE  173 (211)
Q Consensus       163 i~~~~~~~~~~  173 (211)
                      |.+.+.++...
T Consensus       178 l~~~i~~~~~~  188 (191)
T 2a5j_A          178 TAKEIYRKIQQ  188 (191)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999887654

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=100.00  E-value=7.5e-34  Score=209.19  Aligned_cols=171  Identities=41%  Similarity=0.782  Sum_probs=156.8

Q ss_pred             CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028251            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      ..++.++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++..+|+
T Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   97 (189)
T 2gf9_A           18 GSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMG   97 (189)
T ss_dssp             TCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSE
T ss_pred             ccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCE
Confidence            45688999999999999999999999999888888888888888888889999999999999999999999999999999


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028251           82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  161 (211)
                      +|+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|+
T Consensus        98 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  177 (189)
T 2gf9_A           98 FLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFE  177 (189)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            99999999999999999999998887666899999999999987777788889999999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 028251          162 KTAAKILQNIQ  172 (211)
Q Consensus       162 ~i~~~~~~~~~  172 (211)
                      +|.+.+.++.+
T Consensus       178 ~l~~~i~~~~~  188 (189)
T 2gf9_A          178 RLVDVICEKMN  188 (189)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhc
Confidence            99999887653

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=100.00  E-value=8.9e-34  Score=209.38  Aligned_cols=172  Identities=47%  Similarity=0.811  Sum_probs=157.8

Q ss_pred             CCCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhcccc
Q 028251            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA   80 (211)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d   80 (211)
                      +++++.++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||.+.+..++..++..+|
T Consensus        20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   99 (193)
T 2oil_A           20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAV   99 (193)
T ss_dssp             CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCC
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence            35678899999999999999999999999988888888888888888889999999999999999999999999999999


Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHH
Q 028251           81 GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF  160 (211)
Q Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~  160 (211)
                      ++|+|||++++.++..+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|
T Consensus       100 ~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  179 (193)
T 2oil_A          100 GALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAF  179 (193)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999999998887666789999999999998766778888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 028251          161 IKTAAKILQNIQ  172 (211)
Q Consensus       161 ~~i~~~~~~~~~  172 (211)
                      ++|.+.+.++..
T Consensus       180 ~~l~~~i~~~~~  191 (193)
T 2oil_A          180 ETVLKEIFAKVS  191 (193)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh
Confidence            999999987654

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=6.3e-34  Score=207.17  Aligned_cols=168  Identities=68%  Similarity=1.111  Sum_probs=154.4

Q ss_pred             CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028251            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      .+++.++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus        11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   90 (179)
T 1z0f_A           11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG   90 (179)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence            45688999999999999999999999999888888888888888888899999999999999999999999999999999


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028251           82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  161 (211)
                      +|+|||++++.++..+..|+..+......+.|+++|+||+|+.+...+..+++.+++...+++++++||+++.|++++|+
T Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  170 (179)
T 1z0f_A           91 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFL  170 (179)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999998887767899999999999987777788889999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 028251          162 KTAAKILQ  169 (211)
Q Consensus       162 ~i~~~~~~  169 (211)
                      +|.+.+.+
T Consensus       171 ~l~~~i~~  178 (179)
T 1z0f_A          171 EAAKKIYQ  178 (179)
T ss_dssp             HHHHHHC-
T ss_pred             HHHHHHhh
Confidence            99988754

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.5e-33  Score=205.57  Aligned_cols=173  Identities=46%  Similarity=0.775  Sum_probs=155.7

Q ss_pred             CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028251            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      ++++.++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus         5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   84 (181)
T 3tw8_B            5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG   84 (181)
T ss_dssp             -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence            46788999999999999999999999999888888888999998889999999999999999999999999999999999


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028251           82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  161 (211)
                      +|+|||++++.++..+..|+..+.... .+.|+++|+||+|+.+......++...++...+++++++||++|.|++++|+
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  163 (181)
T 3tw8_B           85 VIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFN  163 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHC-TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            999999999999999999999887755 4799999999999988777888889999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcc
Q 028251          162 KTAAKILQNIQEGA  175 (211)
Q Consensus       162 ~i~~~~~~~~~~~~  175 (211)
                      +|.+.+.+...+..
T Consensus       164 ~l~~~~~~~~~~~~  177 (181)
T 3tw8_B          164 CITELVLRAKKDNL  177 (181)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhhhhh
Confidence            99999988776543

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=100.00  E-value=2.8e-33  Score=204.34  Aligned_cols=167  Identities=40%  Similarity=0.759  Sum_probs=152.8

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ...++|+|+|++|+|||||+++|++..+.....++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|
T Consensus        10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   89 (181)
T 2efe_B           10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   89 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEE
Confidence            46799999999999999999999999988888888888888888889999999999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Q 028251           84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT  163 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i  163 (211)
                      +|||++++.++..+..|+..+......+.|+++|+||+|+.+...+..+++..++...+++++++||+++.|++++|++|
T Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l  169 (181)
T 2efe_B           90 IVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEI  169 (181)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence            99999999999999999999988776789999999999998777788889999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 028251          164 AAKILQN  170 (211)
Q Consensus       164 ~~~~~~~  170 (211)
                      .+.+...
T Consensus       170 ~~~~~~~  176 (181)
T 2efe_B          170 ARRLPRV  176 (181)
T ss_dssp             HHTCC--
T ss_pred             HHHHHhc
Confidence            8877544

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=100.00  E-value=6.7e-34  Score=205.49  Aligned_cols=167  Identities=35%  Similarity=0.706  Sum_probs=145.4

Q ss_pred             CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028251            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      .+++.++|+|+|++|+|||||+++|++..+.....++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus         2 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~   81 (170)
T 1z08_A            2 SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNG   81 (170)
T ss_dssp             --CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSE
T ss_pred             CCCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCE
Confidence            46788999999999999999999999999888888888888888888888889999999999999999999999999999


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028251           82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  161 (211)
                      +|+|||++++.++..+..|+..+......+.|+++++||+|+.+.+.+..++...++...+++++++||+++.|++++|+
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  161 (170)
T 1z08_A           82 AILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFL  161 (170)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Confidence            99999999999999999999888776656899999999999987777888889999999999999999999999999999


Q ss_pred             HHHHHHH
Q 028251          162 KTAAKIL  168 (211)
Q Consensus       162 ~i~~~~~  168 (211)
                      +|.+.+.
T Consensus       162 ~l~~~~~  168 (170)
T 1z08_A          162 DLCKRMI  168 (170)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998875

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=100.00  E-value=1.6e-33  Score=205.84  Aligned_cols=170  Identities=32%  Similarity=0.455  Sum_probs=152.3

Q ss_pred             CCCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhcccc
Q 028251            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA   80 (211)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d   80 (211)
                      |+....++|+++|++|+|||||+++|+++.+...+.++.+.++ ...+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus         1 m~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~   79 (181)
T 3t5g_A            1 MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDIN   79 (181)
T ss_dssp             -CCEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCS
T ss_pred             CCCCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCC
Confidence            7888899999999999999999999999988888888878777 666788999999999999999999999999999999


Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Q 028251           81 GALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEA  159 (211)
Q Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~  159 (211)
                      ++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++
T Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l  159 (181)
T 3t5g_A           80 GYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDV  159 (181)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHH
Confidence            99999999999999999999988866543 58999999999999888888899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028251          160 FIKTAAKILQNI  171 (211)
Q Consensus       160 ~~~i~~~~~~~~  171 (211)
                      |+.|.+.+....
T Consensus       160 ~~~l~~~~~~~~  171 (181)
T 3t5g_A          160 FRRIILEAEKMD  171 (181)
T ss_dssp             HHHHHHHHHTC-
T ss_pred             HHHHHHHHHHhc
Confidence            999999886554

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=100.00  E-value=5e-33  Score=200.81  Aligned_cols=166  Identities=40%  Similarity=0.739  Sum_probs=153.5

Q ss_pred             CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028251            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      ++++.++|+++|++|+|||||+++|.+..+...+.++.+.++....+.+++....+.+||+||.+.+...+..+++.+|+
T Consensus         2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~   81 (170)
T 1z0j_A            2 SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAA   81 (170)
T ss_dssp             CSEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred             CCCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCE
Confidence            46788999999999999999999999999888888888999888888899999999999999999999999999999999


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028251           82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  161 (211)
                      +|+|||++++.++..+..|+..+.....+..|+++|+||+|+.+......++...++...+++++++||+++.|++++|+
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  161 (170)
T 1z0j_A           82 AIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFI  161 (170)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence            99999999999999999999999887667899999999999987777788889999999999999999999999999999


Q ss_pred             HHHHHH
Q 028251          162 KTAAKI  167 (211)
Q Consensus       162 ~i~~~~  167 (211)
                      +|.+.+
T Consensus       162 ~i~~~i  167 (170)
T 1z0j_A          162 EISRRI  167 (170)
T ss_dssp             HHHHHC
T ss_pred             HHHHHH
Confidence            998765

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=9.6e-35  Score=214.39  Aligned_cols=171  Identities=41%  Similarity=0.789  Sum_probs=157.6

Q ss_pred             CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028251            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      ++++.+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|+
T Consensus        19 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   98 (191)
T 3dz8_A           19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMG   98 (191)
T ss_dssp             EEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCE
T ss_pred             ccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCE
Confidence            46788999999999999999999999999888888888888888888888888999999999999999999999999999


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028251           82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  161 (211)
                      +|+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+....++...++...+++++++||++|.|++++|+
T Consensus        99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  178 (191)
T 3dz8_A           99 FILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFE  178 (191)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            99999999999999999999999887767899999999999987778888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 028251          162 KTAAKILQNIQ  172 (211)
Q Consensus       162 ~i~~~~~~~~~  172 (211)
                      +|.+.+.++..
T Consensus       179 ~l~~~i~~~~~  189 (191)
T 3dz8_A          179 RLVDAICDKMS  189 (191)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHHHhcc
Confidence            99999987654

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=100.00  E-value=1.4e-33  Score=203.65  Aligned_cols=167  Identities=49%  Similarity=0.898  Sum_probs=145.3

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ++.++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|
T Consensus         1 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   80 (170)
T 1g16_A            1 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGII   80 (170)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEE
T ss_pred             CCceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEE
Confidence            46799999999999999999999999988888888888888888888888899999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Q 028251           84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT  163 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i  163 (211)
                      +|||++++.++..+..|+..+......+.|+++++||+|+ ..+....++...++...+++++++||+++.|++++|++|
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l  159 (170)
T 1g16_A           81 LVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL  159 (170)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence            9999999999999999999988877678999999999999 445567788889999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 028251          164 AAKILQNI  171 (211)
Q Consensus       164 ~~~~~~~~  171 (211)
                      .+.+.++.
T Consensus       160 ~~~~~~~~  167 (170)
T 1g16_A          160 AKLIQEKI  167 (170)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHHh
Confidence            99887653

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=100.00  E-value=6.1e-33  Score=206.04  Aligned_cols=169  Identities=36%  Similarity=0.647  Sum_probs=151.9

Q ss_pred             CCCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEE--------------------------
Q 028251            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRP--------------------------   54 (211)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------   54 (211)
                      |+.++.++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..                          
T Consensus         2 m~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (208)
T 3clv_A            2 MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITN   81 (208)
T ss_dssp             CCCCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC----------------------------
T ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccc
Confidence            888999999999999999999999999999888888888888888777777655                          


Q ss_pred             -----------EEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCC
Q 028251           55 -----------IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL  123 (211)
Q Consensus        55 -----------~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  123 (211)
                                 ..+.+||+||++.+...+..+++.+|++|+|||++++.++..+..|+..+....  +.|+++|+||+| 
T Consensus        82 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~--~~piilv~NK~D-  158 (208)
T 3clv_A           82 QHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS--NYIIILVANKID-  158 (208)
T ss_dssp             ---CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CCEEEEEEECTT-
T ss_pred             ccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC--CCcEEEEEECCC-
Confidence                       889999999999999999999999999999999999999999999998887765  499999999999 


Q ss_pred             CCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Q 028251          124 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ  172 (211)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~~  172 (211)
                      ........+++..++...+++++++||+++.|++++|++|.+.+.++.+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  207 (208)
T 3clv_A          159 KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNII  207 (208)
T ss_dssp             CC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred             cccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhcC
Confidence            5556677889999999999999999999999999999999999887654

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=100.00  E-value=4.1e-33  Score=201.11  Aligned_cols=164  Identities=43%  Similarity=0.796  Sum_probs=151.2

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ...++|+++|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1r2q_A            4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI   83 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence            46799999999999999999999999988888888888888888889999999999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Q 028251           84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT  163 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i  163 (211)
                      +|||++++.++..+..|+..+.....++.|+++++||+|+.+......++...++...+++++++||++|.|++++|++|
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i  163 (170)
T 1r2q_A           84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI  163 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999888766789999999999997766777888899999999999999999999999999999


Q ss_pred             HHHH
Q 028251          164 AAKI  167 (211)
Q Consensus       164 ~~~~  167 (211)
                      .+.+
T Consensus       164 ~~~~  167 (170)
T 1r2q_A          164 AKKL  167 (170)
T ss_dssp             HHTS
T ss_pred             HHHH
Confidence            8765

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.5e-33  Score=208.13  Aligned_cols=169  Identities=37%  Similarity=0.656  Sum_probs=152.7

Q ss_pred             CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028251            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      .+++.++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++..+|+
T Consensus        19 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   98 (192)
T 2fg5_A           19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAA   98 (192)
T ss_dssp             --CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred             ccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCE
Confidence            35678999999999999999999999999888888888998888888888888999999999999999999999999999


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028251           82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  161 (211)
                      +|+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|+
T Consensus        99 iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  178 (192)
T 2fg5_A           99 AVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQ  178 (192)
T ss_dssp             EEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence            99999999999999999999999887767899999999999977667788899999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 028251          162 KTAAKILQN  170 (211)
Q Consensus       162 ~i~~~~~~~  170 (211)
                      +|.+.+.+.
T Consensus       179 ~l~~~i~~~  187 (192)
T 2fg5_A          179 GISRQIPPL  187 (192)
T ss_dssp             HHHHTCC--
T ss_pred             HHHHHHHhh
Confidence            998876443

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=100.00  E-value=8.3e-34  Score=213.28  Aligned_cols=175  Identities=37%  Similarity=0.727  Sum_probs=154.0

Q ss_pred             CCCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCE----------EEEEEEEeCCCccchhh
Q 028251            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGR----------PIKLQIWDTAGQESFRS   70 (211)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~l~l~D~~G~~~~~~   70 (211)
                      +++++.++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++.          .+.+.||||||++.+..
T Consensus        20 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~   99 (217)
T 2f7s_A           20 GDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRS   99 (217)
T ss_dssp             -CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHH
T ss_pred             CCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHh
Confidence            46788999999999999999999999998887777777777777777777766          78899999999999999


Q ss_pred             chHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEe
Q 028251           71 ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEAS  149 (211)
Q Consensus        71 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s  149 (211)
                      .+..++..+|++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..++...+++++++|
T Consensus       100 ~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S  179 (217)
T 2f7s_A          100 LTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETS  179 (217)
T ss_dssp             HHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEB
T ss_pred             HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEE
Confidence            999999999999999999999999999999887765443 5899999999999987777788889999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHhhcc
Q 028251          150 ARTAQNVEEAFIKTAAKILQNIQEGA  175 (211)
Q Consensus       150 ~~~~~~i~~~~~~i~~~~~~~~~~~~  175 (211)
                      |+++.|++++|++|.+.+.++.+...
T Consensus       180 a~~g~gi~~l~~~l~~~i~~~~~~~~  205 (217)
T 2f7s_A          180 AATGQNVEKAVETLLDLIMKRMEQCV  205 (217)
T ss_dssp             TTTTBTHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhhcCC
Confidence            99999999999999999988766533

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.9e-33  Score=207.73  Aligned_cols=169  Identities=45%  Similarity=0.798  Sum_probs=146.9

Q ss_pred             CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028251            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      +.++.++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus        22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~  101 (192)
T 2il1_A           22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKG  101 (192)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSE
T ss_pred             ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence            35678999999999999999999999998888888888888888888899999999999999999999999999999999


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHc-CCcEEEEeCCCCCCHHHHH
Q 028251           82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN-GLLFLEASARTAQNVEEAF  160 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~i~~~~  160 (211)
                      +|+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++..++... +.+++++||++|.|++++|
T Consensus       102 iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~  181 (192)
T 2il1_A          102 IILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIF  181 (192)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHH
Confidence            999999999999999999998888877678999999999999877777888888888874 7899999999999999999


Q ss_pred             HHHHHHHHHH
Q 028251          161 IKTAAKILQN  170 (211)
Q Consensus       161 ~~i~~~~~~~  170 (211)
                      ++|.+.+.++
T Consensus       182 ~~l~~~i~~~  191 (192)
T 2il1_A          182 LKLVDDILKK  191 (192)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999988654

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=5.6e-33  Score=202.56  Aligned_cols=169  Identities=45%  Similarity=0.844  Sum_probs=145.1

Q ss_pred             CCCceeeEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhcccc
Q 028251            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA   80 (211)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d   80 (211)
                      .++..++|+++|++|+|||||+++|++..+. ..+.++.+.++....+.+++..+.+.+||+||++.+...+..++..+|
T Consensus         6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d   85 (180)
T 2g6b_A            6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH   85 (180)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred             cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence            4678899999999999999999999998885 456677788888877888999999999999999999999999999999


Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHH
Q 028251           81 GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF  160 (211)
Q Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~  160 (211)
                      ++|+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|
T Consensus        86 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  165 (180)
T 2g6b_A           86 ALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAF  165 (180)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence            99999999999999999999999888766789999999999998777778888899999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 028251          161 IKTAAKILQN  170 (211)
Q Consensus       161 ~~i~~~~~~~  170 (211)
                      ++|.+.+.++
T Consensus       166 ~~l~~~~~~~  175 (180)
T 2g6b_A          166 TAIAKELKRR  175 (180)
T ss_dssp             HHHHHHHHC-
T ss_pred             HHHHHHHHHH
Confidence            9999888543

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=100.00  E-value=4.2e-34  Score=214.20  Aligned_cols=173  Identities=32%  Similarity=0.605  Sum_probs=145.2

Q ss_pred             CCCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhcccc
Q 028251            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA   80 (211)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d   80 (211)
                      |+....++|+|+|++|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+|||||++.+..++..+++.+|
T Consensus         4 m~~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   82 (212)
T 2j0v_A            4 MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGAD   82 (212)
T ss_dssp             CSCCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEE-EEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCS
T ss_pred             CCcCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCC
Confidence            77778899999999999999999999999888777777776553 44667888899999999999999999999999999


Q ss_pred             EEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEecCCCCCCCC--------CCHHHHHHHHHHcCC-cEEEEeC
Q 028251           81 GALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRRA--------VSKEEGEQFAKENGL-LFLEASA  150 (211)
Q Consensus        81 ~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--------~~~~~~~~~~~~~~~-~~~~~s~  150 (211)
                      ++|+|||++++.++..+. .|+..+.... .+.|+++|+||+|+.+...        +..+++..++...+. +++++||
T Consensus        83 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  161 (212)
T 2j0v_A           83 IFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSS  161 (212)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccC
Confidence            999999999999999986 7888887665 3899999999999965432        367788888888886 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhhcc
Q 028251          151 RTAQNVEEAFIKTAAKILQNIQEGA  175 (211)
Q Consensus       151 ~~~~~i~~~~~~i~~~~~~~~~~~~  175 (211)
                      ++|.|++++|++|.+.+.+......
T Consensus       162 ~~g~gi~~l~~~l~~~~~~~~~~~~  186 (212)
T 2j0v_A          162 KTQQNVKAVFDTAIKVVLQPPRRKE  186 (212)
T ss_dssp             TTCTTHHHHHHHHHHHHHCC-----
T ss_pred             CCCCCHHHHHHHHHHHHhhhhhhcc
Confidence            9999999999999999876554433

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=100.00  E-value=3.1e-33  Score=201.53  Aligned_cols=166  Identities=37%  Similarity=0.610  Sum_probs=150.9

Q ss_pred             CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028251            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      +++.++|+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus         2 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   81 (168)
T 1z2a_A            2 SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC   81 (168)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEE
T ss_pred             CceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEE
Confidence            46789999999999999999999999998888888888888888888899899999999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Q 028251           83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK  162 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  162 (211)
                      |+|||++++.++..+..|+..+.... .+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|++
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  160 (168)
T 1z2a_A           82 VLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKY  160 (168)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Confidence            99999999999999999998887665 58999999999999876677788889999999999999999999999999999


Q ss_pred             HHHHHHH
Q 028251          163 TAAKILQ  169 (211)
Q Consensus       163 i~~~~~~  169 (211)
                      |.+.+.+
T Consensus       161 l~~~~~~  167 (168)
T 1z2a_A          161 LAEKHLQ  167 (168)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhh
Confidence            9988753

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=100.00  E-value=8.2e-33  Score=203.78  Aligned_cols=171  Identities=39%  Similarity=0.726  Sum_probs=153.5

Q ss_pred             CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEE-EEEEEECCE---------EEEEEEEeCCCccchhhch
Q 028251            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFG-ARMVTIDGR---------PIKLQIWDTAGQESFRSIT   72 (211)
Q Consensus         3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~l~l~D~~G~~~~~~~~   72 (211)
                      +++.++|+|+|++|+|||||+++|++..+...+.++.+.++. ...+.+++.         .+.+.+||+||++.+...+
T Consensus         8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~   87 (195)
T 3bc1_A            8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT   87 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred             cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence            567899999999999999999999999988888888888877 556666665         7889999999999999999


Q ss_pred             HHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCC
Q 028251           73 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASAR  151 (211)
Q Consensus        73 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~  151 (211)
                      ..+++.+|++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..++...+++++++||+
T Consensus        88 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  167 (195)
T 3bc1_A           88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAA  167 (195)
T ss_dssp             HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTT
T ss_pred             HHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEECC
Confidence            9999999999999999999999999999998877664 689999999999998766778888999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhh
Q 028251          152 TAQNVEEAFIKTAAKILQNIQE  173 (211)
Q Consensus       152 ~~~~i~~~~~~i~~~~~~~~~~  173 (211)
                      ++.|++++|++|.+.+.++...
T Consensus       168 ~~~~v~~l~~~l~~~~~~~~~~  189 (195)
T 3bc1_A          168 NGTNISHAIEMLLDLIMKRMER  189 (195)
T ss_dssp             TCTTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999877654

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=1.4e-32  Score=201.16  Aligned_cols=165  Identities=33%  Similarity=0.540  Sum_probs=150.5

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ...++|+|+|++|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++|
T Consensus        16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   94 (183)
T 3kkq_A           16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL   94 (183)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            3679999999999999999999999988888888877777 666788999999999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCC-CCCCHHHHHH
Q 028251           84 LVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASAR-TAQNVEEAFI  161 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~i~~~~~  161 (211)
                      +|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..++...+++++++||+ ++.|++++|+
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~  174 (183)
T 3kkq_A           95 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH  174 (183)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHH
Confidence            9999999999999999998886643 4689999999999998878888899999999999999999999 9999999999


Q ss_pred             HHHHHHHH
Q 028251          162 KTAAKILQ  169 (211)
Q Consensus       162 ~i~~~~~~  169 (211)
                      .|.+.+.+
T Consensus       175 ~l~~~i~~  182 (183)
T 3kkq_A          175 DLVRVIRQ  182 (183)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhh
Confidence            99998865

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=100.00  E-value=2.2e-32  Score=200.75  Aligned_cols=169  Identities=33%  Similarity=0.576  Sum_probs=146.2

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ...++|+++|++|+|||||+++|.+..+...+.++.+ +.....+.+++..+.+.+||+||++.+...+..++..+|+++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   80 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   80 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence            3578999999999999999999999998777777754 444455778999999999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Q 028251           84 LVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK  162 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  162 (211)
                      +|||++++.++..+..|+..+..... .+.|+++|+||+|+.+ .....++...++...+++++++||++|.|++++|++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  159 (189)
T 4dsu_A           81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYT  159 (189)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999988877543 6899999999999974 456778889999999999999999999999999999


Q ss_pred             HHHHHHHHHhhc
Q 028251          163 TAAKILQNIQEG  174 (211)
Q Consensus       163 i~~~~~~~~~~~  174 (211)
                      |.+.+.+.....
T Consensus       160 l~~~~~~~~~~~  171 (189)
T 4dsu_A          160 LVREIRKHKEKM  171 (189)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhc
Confidence            999998776654

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=9.3e-33  Score=199.24  Aligned_cols=163  Identities=42%  Similarity=0.761  Sum_probs=149.1

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ..++|+++|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            46899999999999999999999999888888888888888888899999999999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCC---CCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028251           85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR---RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  161 (211)
                      |||++++.++..+..|+..+......+.|+++++||+|+...   ..+..++...++...+++++++||+++.|++++|+
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  161 (170)
T 1ek0_A           82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999999988877678999999999999654   56777888889988999999999999999999999


Q ss_pred             HHHHHH
Q 028251          162 KTAAKI  167 (211)
Q Consensus       162 ~i~~~~  167 (211)
                      +|.+.+
T Consensus       162 ~l~~~i  167 (170)
T 1ek0_A          162 GIGEKI  167 (170)
T ss_dssp             HHHTTS
T ss_pred             HHHHHH
Confidence            988654

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=1.4e-32  Score=205.75  Aligned_cols=172  Identities=47%  Similarity=0.885  Sum_probs=153.7

Q ss_pred             CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028251            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      ++..++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..++..+|++
T Consensus        17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   96 (213)
T 3cph_A           17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI   96 (213)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence            45679999999999999999999999998888888888888888888999889999999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Q 028251           83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK  162 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  162 (211)
                      |+|||++++.++..+..|+..+......+.|+++|+||+|+ .......++...++...+++++++||+++.|++++|++
T Consensus        97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  175 (213)
T 3cph_A           97 ILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFT  175 (213)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999888876668999999999999 44556778888898889999999999999999999999


Q ss_pred             HHHHHHHHHhhcc
Q 028251          163 TAAKILQNIQEGA  175 (211)
Q Consensus       163 i~~~~~~~~~~~~  175 (211)
                      |.+.+.++.....
T Consensus       176 l~~~~~~~~~~~~  188 (213)
T 3cph_A          176 LAKLIQEKIDSNK  188 (213)
T ss_dssp             HHHHHHHHHHTTS
T ss_pred             HHHHHHHHHhhhh
Confidence            9999988765433

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=100.00  E-value=2.7e-33  Score=207.95  Aligned_cols=167  Identities=38%  Similarity=0.683  Sum_probs=139.0

Q ss_pred             CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028251            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      ..+..++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+..++..+++.+|+
T Consensus        24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  103 (199)
T 2p5s_A           24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG  103 (199)
T ss_dssp             ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred             CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence            45678999999999999999999999999887778888888888888899999999999999999999999999999999


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCC------CCCCCCHHHHHHHHHHcCCcEEEEeCCCCCC
Q 028251           82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA------HRRAVSKEEGEQFAKENGLLFLEASARTAQN  155 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  155 (211)
                      +|+|||++++.++..+..|+..+......+.|+++|+||+|+.      ..+.+..+++..++...+++++++||+++.|
T Consensus       104 iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~g  183 (199)
T 2p5s_A          104 VLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSN  183 (199)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTT
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCC
Confidence            9999999999999999999998887766689999999999995      3456777888899999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028251          156 VEEAFIKTAAKIL  168 (211)
Q Consensus       156 i~~~~~~i~~~~~  168 (211)
                      ++++|++|.+.+.
T Consensus       184 v~el~~~l~~~i~  196 (199)
T 2p5s_A          184 IVEAVLHLAREVK  196 (199)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998774

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=100.00  E-value=2.2e-32  Score=199.29  Aligned_cols=168  Identities=33%  Similarity=0.570  Sum_probs=150.7

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ...++|+|+|++|+|||||+++|++..+...+.++.+..+. ..+.+++..+.+.+||+||++.+..++..++..+|++|
T Consensus         7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i   85 (181)
T 2fn4_A            7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL   85 (181)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE
Confidence            46799999999999999999999999888888888777766 55778888899999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Q 028251           84 LVYDITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK  162 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  162 (211)
                      +|||++++.++..+..|+..+... ...+.|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|++
T Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  165 (181)
T 2fn4_A           86 LVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQ  165 (181)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence            999999999999999999888443 3468999999999999877778888899999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 028251          163 TAAKILQNIQ  172 (211)
Q Consensus       163 i~~~~~~~~~  172 (211)
                      |.+.+.+..+
T Consensus       166 l~~~~~~~~~  175 (181)
T 2fn4_A          166 LVRAVRKYQE  175 (181)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHhhc
Confidence            9999876554

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.8e-33  Score=208.13  Aligned_cols=171  Identities=30%  Similarity=0.469  Sum_probs=145.3

Q ss_pred             CCCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhcccc
Q 028251            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA   80 (211)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d   80 (211)
                      |+....++|+|+|++|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..++..+|
T Consensus        19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   97 (201)
T 3oes_A           19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVH   97 (201)
T ss_dssp             ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCC
T ss_pred             CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCC
Confidence            6667889999999999999999999999999888888877776 555667778889999999999999999999999999


Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Q 028251           81 GALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEA  159 (211)
Q Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~  159 (211)
                      ++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+...+..++...++...+++++++||+++.|++++
T Consensus        98 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l  177 (201)
T 3oes_A           98 GYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGI  177 (201)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHH
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Confidence            99999999999999999999998876543 57899999999999877788889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 028251          160 FIKTAAKILQNIQ  172 (211)
Q Consensus       160 ~~~i~~~~~~~~~  172 (211)
                      |++|.+.+.+...
T Consensus       178 ~~~l~~~i~~~~~  190 (201)
T 3oes_A          178 FTKVIQEIARVEN  190 (201)
T ss_dssp             HHHHHHHHHHC--
T ss_pred             HHHHHHHHHhhhh
Confidence            9999999876544

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=100.00  E-value=1.1e-32  Score=200.56  Aligned_cols=164  Identities=41%  Similarity=0.734  Sum_probs=150.9

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ..++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..++..+|++|+
T Consensus        13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~   92 (179)
T 2y8e_A           13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVV   92 (179)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence            56899999999999999999999999888888888888888888899999999999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Q 028251           85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA  164 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~  164 (211)
                      |||++++.++..+..|+..+......+.|+++|+||+|+.+.+....++...++...+++++++||+++.|++++|++|.
T Consensus        93 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  172 (179)
T 2y8e_A           93 VYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA  172 (179)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999999999988777666899999999999987777788888899999999999999999999999999998


Q ss_pred             HHHH
Q 028251          165 AKIL  168 (211)
Q Consensus       165 ~~~~  168 (211)
                      +.+.
T Consensus       173 ~~~~  176 (179)
T 2y8e_A          173 AALP  176 (179)
T ss_dssp             HTCC
T ss_pred             HHHh
Confidence            7653

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4e-33  Score=206.55  Aligned_cols=164  Identities=29%  Similarity=0.441  Sum_probs=142.6

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ...++|+|+|++|+|||||+++|.+..+...+.++.+.++. ..+.+++..+.+.+|||||++.+..++..++..+|++|
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   84 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI   84 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence            46799999999999999999999999887777777665554 44667888899999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028251           84 LVYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  161 (211)
                      +|||++++.++..+..|+..+.....  .+.|+++|+||+|+.+ .....++...++...+++++++||+++.|++++|+
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  163 (199)
T 2gf0_A           85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQ  163 (199)
T ss_dssp             EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Confidence            99999999999999888887766543  4789999999999975 45667888888888999999999999999999999


Q ss_pred             HHHHHHHH
Q 028251          162 KTAAKILQ  169 (211)
Q Consensus       162 ~i~~~~~~  169 (211)
                      +|.+.+.+
T Consensus       164 ~l~~~~~~  171 (199)
T 2gf0_A          164 ELLTLETR  171 (199)
T ss_dssp             HHHHHCSS
T ss_pred             HHHHHHhh
Confidence            99887643

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=100.00  E-value=1.8e-32  Score=198.82  Aligned_cols=168  Identities=32%  Similarity=0.444  Sum_probs=137.2

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc--hhhchHHHhccccE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES--FRSITRSYYRGAAG   81 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~--~~~~~~~~~~~~d~   81 (211)
                      ++.++|+|+|++|+|||||+++|.+..+...+. +.+.++....+.+++..+.+.+||+||++.  +..+...+++.+|+
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~   80 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA   80 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC-----CC-CSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCccccC-ccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence            467999999999999999999999888765544 456677777788899999999999999987  56677788899999


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHH
Q 028251           82 ALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF  160 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~  160 (211)
                      +|+|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  160 (175)
T 2nzj_A           81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF  160 (175)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence            999999999999999999988887653 3579999999999998777788888888888899999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 028251          161 IKTAAKILQNIQ  172 (211)
Q Consensus       161 ~~i~~~~~~~~~  172 (211)
                      ++|.+.+..+..
T Consensus       161 ~~l~~~~~~~~~  172 (175)
T 2nzj_A          161 EGVVRQLRLRRR  172 (175)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHhhc
Confidence            999998876544

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=100.00  E-value=2.8e-32  Score=198.69  Aligned_cols=167  Identities=19%  Similarity=0.305  Sum_probs=142.4

Q ss_pred             CCCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhcccc
Q 028251            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA   80 (211)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d   80 (211)
                      |.....+||+++|++|||||||+++|.+..+.+ +.++.+..+ ...+.+++..+.+.+|||||++.     ..+++.+|
T Consensus         2 m~~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d   74 (178)
T 2iwr_A            2 MRSIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWAD   74 (178)
T ss_dssp             CCCCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCS
T ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCC
Confidence            777789999999999999999999999998876 566666554 55677899999999999999886     46788899


Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcC---CCCeEEEEEecCCCC--CCCCCCHHHHHHHHHHc-CCcEEEEeCCCCC
Q 028251           81 GALLVYDITRRETFNHLSSWLEDARQHAN---PNMSIMLVGNKCDLA--HRRAVSKEEGEQFAKEN-GLLFLEASARTAQ  154 (211)
Q Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~  154 (211)
                      ++|+|||++++.++..+..|+..+.....   .+.|+++|+||+|+.  ..+.+..+++..++... +++++++||++|.
T Consensus        75 ~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~  154 (178)
T 2iwr_A           75 AVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGL  154 (178)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTB
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccC
Confidence            99999999999999999998766655433   579999999999994  44567788888888876 6899999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhhc
Q 028251          155 NVEEAFIKTAAKILQNIQEG  174 (211)
Q Consensus       155 ~i~~~~~~i~~~~~~~~~~~  174 (211)
                      |++++|++|.+.+.+..+..
T Consensus       155 ~i~~lf~~l~~~~~~~~~~~  174 (178)
T 2iwr_A          155 NVDRVFQEVAQKVVTLRKQQ  174 (178)
T ss_dssp             THHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhhh
Confidence            99999999999998876643

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=100.00  E-value=2.9e-32  Score=198.22  Aligned_cols=166  Identities=37%  Similarity=0.678  Sum_probs=146.3

Q ss_pred             CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028251            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      .+..++|+++|++|+|||||+++|++..+.....++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus         4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   83 (177)
T 1wms_A            4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   83 (177)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence            45789999999999999999999999998888888888888888888999999999999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcC----CCCeEEEEEecCCCCCCCCCCHHHHHHHHH-HcCCcEEEEeCCCCCCHH
Q 028251           83 LLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-ENGLLFLEASARTAQNVE  157 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~i~  157 (211)
                      |+|||++++.++..+..|+..+.....    .+.|+++|+||+|+. ......+++..++. ..+++++++||+++.|++
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  162 (177)
T 1wms_A           84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVA  162 (177)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence            999999999999999999988876553    578999999999997 45567788888888 567899999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028251          158 EAFIKTAAKILQ  169 (211)
Q Consensus       158 ~~~~~i~~~~~~  169 (211)
                      ++|++|.+.+.+
T Consensus       163 ~l~~~l~~~~~~  174 (177)
T 1wms_A          163 AAFEEAVRRVLA  174 (177)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            999999998864

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4.1e-32  Score=200.38  Aligned_cols=166  Identities=49%  Similarity=0.848  Sum_probs=150.5

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ..++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.||||||++.+..++..+++.+|++|+
T Consensus        14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   93 (195)
T 1x3s_A           14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL   93 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEE
Confidence            56899999999999999999999999888888888899988888999999999999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Q 028251           85 VYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT  163 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i  163 (211)
                      |||++++.++..+..|+..+..... .+.|+++|+||+|+.+ ..+..+++..++...+++++++||+++.|++++|++|
T Consensus        94 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  172 (195)
T 1x3s_A           94 VYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEEL  172 (195)
T ss_dssp             EEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc-cccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence            9999999999999999888876543 5799999999999953 4567788889999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 028251          164 AAKILQNI  171 (211)
Q Consensus       164 ~~~~~~~~  171 (211)
                      .+.+.+..
T Consensus       173 ~~~~~~~~  180 (195)
T 1x3s_A          173 VEKIIQTP  180 (195)
T ss_dssp             HHHHHTSG
T ss_pred             HHHHHhhh
Confidence            99887543

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=100.00  E-value=8e-33  Score=204.95  Aligned_cols=168  Identities=27%  Similarity=0.386  Sum_probs=143.2

Q ss_pred             CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh-chHHHhccccE
Q 028251            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS-ITRSYYRGAAG   81 (211)
Q Consensus         3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~-~~~~~~~~~d~   81 (211)
                      .++.++|+|+|++|||||||+++|.+........++.+.+.....+.+++..+.+.+||++|++.+.. ++..++..+|+
T Consensus        20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~   99 (195)
T 3cbq_A           20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDA   99 (195)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSE
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCE
Confidence            45789999999999999999999976544333344455566666678899999999999999988765 77888999999


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHH
Q 028251           82 ALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF  160 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~  160 (211)
                      +|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|
T Consensus       100 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf  179 (195)
T 3cbq_A          100 FLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF  179 (195)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHH
Confidence            9999999999999999999998877553 589999999999998777788889999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 028251          161 IKTAAKILQN  170 (211)
Q Consensus       161 ~~i~~~~~~~  170 (211)
                      +.|.+.+.++
T Consensus       180 ~~l~~~i~~~  189 (195)
T 3cbq_A          180 EGAVRQIRLR  189 (195)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHHh
Confidence            9999888543

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=100.00  E-value=1.9e-32  Score=201.69  Aligned_cols=166  Identities=42%  Similarity=0.779  Sum_probs=147.7

Q ss_pred             CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchh-hchHHHhccccE
Q 028251            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR-SITRSYYRGAAG   81 (211)
Q Consensus         3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~-~~~~~~~~~~d~   81 (211)
                      ....++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+. ..+..+++.+|+
T Consensus        17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~   96 (189)
T 1z06_A           17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA   96 (189)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence            3467999999999999999999999999888888888888888888899989999999999999988 889999999999


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCC---CCHH
Q 028251           82 ALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTA---QNVE  157 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---~~i~  157 (211)
                      +|+|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++...+++++++||+++   .+++
T Consensus        97 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~  176 (189)
T 1z06_A           97 VVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVE  176 (189)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHH
Confidence            999999999999999999999887765 468999999999999877777888899999999999999999999   9999


Q ss_pred             HHHHHHHHHHH
Q 028251          158 EAFIKTAAKIL  168 (211)
Q Consensus       158 ~~~~~i~~~~~  168 (211)
                      ++|++|.+.+.
T Consensus       177 ~l~~~l~~~i~  187 (189)
T 1z06_A          177 AIFMTLAHKLK  187 (189)
T ss_dssp             HHHHHHC----
T ss_pred             HHHHHHHHHHh
Confidence            99999987764

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=100.00  E-value=1.3e-32  Score=202.37  Aligned_cols=164  Identities=32%  Similarity=0.482  Sum_probs=142.4

Q ss_pred             CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028251            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      ....+||+|+|++|||||||+++|++..+...+.++.+..+. ..+.+++..+.+.+|||||++.+..+ ..++..+|++
T Consensus        18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~   95 (187)
T 3c5c_A           18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS-SEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF   95 (187)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceee-EEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence            457799999999999999999999999988888888777763 45678999999999999999988775 6789999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcC---CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeC-CCCCCHHH
Q 028251           83 LLVYDITRRETFNHLSSWLEDARQHAN---PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASA-RTAQNVEE  158 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~~i~~  158 (211)
                      |+|||++++.++..+..|+..+.....   .+.|+++|+||+|+.+.+.+..+++.+++...+++++++|| +++.|+++
T Consensus        96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~  175 (187)
T 3c5c_A           96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQH  175 (187)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHH
Confidence            999999999999999999988876632   58999999999999877778889999999999999999999 89999999


Q ss_pred             HHHHHHHHHH
Q 028251          159 AFIKTAAKIL  168 (211)
Q Consensus       159 ~~~~i~~~~~  168 (211)
                      +|+.|.+.+.
T Consensus       176 lf~~l~~~i~  185 (187)
T 3c5c_A          176 VFHEAVREAR  185 (187)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998774

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=100.00  E-value=2.3e-32  Score=197.37  Aligned_cols=165  Identities=27%  Similarity=0.404  Sum_probs=134.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh-chHHHhccccEEEE
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS-ITRSYYRGAAGALL   84 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~-~~~~~~~~~d~~i~   84 (211)
                      .+||+++|++|+|||||+++|.+........++.+.+.....+.+++..+.+.+||+||++.+.. .+..+++.+|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            58999999999999999999998777766666667777778888999999999999999998876 77778899999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Q 028251           85 VYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT  163 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i  163 (211)
                      |||++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  161 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA  161 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence            9999999999999999998877654 489999999999998777888899999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 028251          164 AAKILQN  170 (211)
Q Consensus       164 ~~~~~~~  170 (211)
                      .+.+..+
T Consensus       162 ~~~i~~~  168 (169)
T 3q85_A          162 VRQIRLR  168 (169)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9887653

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=100.00  E-value=4e-32  Score=200.73  Aligned_cols=167  Identities=28%  Similarity=0.523  Sum_probs=147.2

Q ss_pred             CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028251            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      .....++|+++|++|+|||||+++|++..+...+.++.+..+.. .+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus        19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   97 (194)
T 3reg_A           19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDV   97 (194)
T ss_dssp             --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE-EEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcE
Confidence            44578999999999999999999999999888888887777764 47789999999999999999999999999999999


Q ss_pred             EEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEecCCCCCC--CCCCHHHHHHHHHHcCCc-EEEEeCCCCCCHH
Q 028251           82 ALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAHR--RAVSKEEGEQFAKENGLL-FLEASARTAQNVE  157 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~i~  157 (211)
                      +|+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+.  .....+++..++...++. ++++||++|.|++
T Consensus        98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  176 (194)
T 3reg_A           98 VLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLN  176 (194)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHH
Confidence            9999999999999997 66777776554 47999999999999753  567788999999999988 9999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028251          158 EAFIKTAAKILQN  170 (211)
Q Consensus       158 ~~~~~i~~~~~~~  170 (211)
                      ++|++|.+.+.++
T Consensus       177 ~l~~~l~~~i~~~  189 (194)
T 3reg_A          177 EVFEKSVDCIFSN  189 (194)
T ss_dssp             HHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988654

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=5.1e-32  Score=200.52  Aligned_cols=169  Identities=37%  Similarity=0.508  Sum_probs=147.5

Q ss_pred             CCCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhcccc
Q 028251            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA   80 (211)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d   80 (211)
                      |.....++|+|+|++|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.+||+||++. ...+..++..+|
T Consensus        23 ~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d  100 (196)
T 2atv_A           23 MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGE  100 (196)
T ss_dssp             ----CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCS
T ss_pred             cCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCC
Confidence            5556789999999999999999999999998888888877665 44467888899999999999988 778889999999


Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCC-CHHH
Q 028251           81 GALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQ-NVEE  158 (211)
Q Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~i~~  158 (211)
                      ++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++. |+++
T Consensus       101 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~  180 (196)
T 2atv_A          101 GFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITE  180 (196)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHH
Confidence            99999999999999999999888877543 589999999999998777788888999999999999999999999 9999


Q ss_pred             HHHHHHHHHHHHH
Q 028251          159 AFIKTAAKILQNI  171 (211)
Q Consensus       159 ~~~~i~~~~~~~~  171 (211)
                      +|++|.+.+.++.
T Consensus       181 l~~~l~~~i~~~~  193 (196)
T 2atv_A          181 IFYELCREVRRRR  193 (196)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999987654

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=100.00  E-value=6.8e-33  Score=201.75  Aligned_cols=167  Identities=36%  Similarity=0.548  Sum_probs=146.2

Q ss_pred             CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECC-EEEEEEEEeCCCccchhhchHHHhccccE
Q 028251            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDG-RPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      .+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++ ..+.+.+||+||++.+...+..+++.+|+
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   82 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG   82 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence            45789999999999999999999999888766667777777777788876 67899999999999999999999999999


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCe-EEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Q 028251           82 ALLVYDITRRETFNHLSSWLEDARQHAN--PNMS-IMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEE  158 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  158 (211)
                      +|+|||++++.++..+..|+..+.....  .+.| +++|+||+|+.+.+.+..++...++...+++++++||+++.|+++
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  162 (178)
T 2hxs_A           83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL  162 (178)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence            9999999999999999999888866432  2444 899999999987677788889999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 028251          159 AFIKTAAKILQ  169 (211)
Q Consensus       159 ~~~~i~~~~~~  169 (211)
                      +|++|.+.+.+
T Consensus       163 l~~~l~~~~~~  173 (178)
T 2hxs_A          163 CFQKVAAEILG  173 (178)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHh
Confidence            99999988743

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=100.00  E-value=1.4e-32  Score=200.50  Aligned_cols=170  Identities=35%  Similarity=0.645  Sum_probs=135.2

Q ss_pred             CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEEC-CEEEEEEEEeCCCccchhhchHHHhcccc
Q 028251            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID-GRPIKLQIWDTAGQESFRSITRSYYRGAA   80 (211)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~l~D~~G~~~~~~~~~~~~~~~d   80 (211)
                      ..+..++|+|+|++|+|||||+++|++..+...+.++.+.++....+.++ +..+.+.+||+||++.+...+..+++.+|
T Consensus         4 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   83 (182)
T 1ky3_A            4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD   83 (182)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCC
T ss_pred             ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCC
Confidence            45678999999999999999999999999888888887888877777776 56678999999999999999999999999


Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcC----CCCeEEEEEecCCCCC-CCCCCHHHHHHHHH-HcCCcEEEEeCCCCC
Q 028251           81 GALLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKCDLAH-RRAVSKEEGEQFAK-ENGLLFLEASARTAQ  154 (211)
Q Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~  154 (211)
                      ++|+|||++++.++..+..|+..+.....    .+.|+++|+||+|+.+ ......+++..++. ..+.+++++||+++.
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~  163 (182)
T 1ky3_A           84 CCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAI  163 (182)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTB
T ss_pred             EEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCC
Confidence            99999999999999999999988876543    5899999999999953 34567788888887 467889999999999


Q ss_pred             CHHHHHHHHHHHHHHHH
Q 028251          155 NVEEAFIKTAAKILQNI  171 (211)
Q Consensus       155 ~i~~~~~~i~~~~~~~~  171 (211)
                      |++++|++|.+.+.++.
T Consensus       164 gi~~l~~~l~~~~~~~~  180 (182)
T 1ky3_A          164 NVDTAFEEIARSALQQN  180 (182)
T ss_dssp             SHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhh
Confidence            99999999999987764

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=1.2e-31  Score=196.76  Aligned_cols=164  Identities=18%  Similarity=0.330  Sum_probs=142.4

Q ss_pred             CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028251            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      .....+||+|+|++|||||||+++|++..+...+.++ +..+ ...+.+++..+.+.+|||+|++.+.     +++.+|+
T Consensus        16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~   88 (184)
T 3ihw_A           16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDA   88 (184)
T ss_dssp             CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSE
T ss_pred             CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCCE
Confidence            3457899999999999999999999999988777766 4444 3668889999999999999998776     7788999


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCC--CCCCCCHHHHHHHHHHcC-CcEEEEeCCCCCCHH
Q 028251           82 ALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLA--HRRAVSKEEGEQFAKENG-LLFLEASARTAQNVE  157 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~i~  157 (211)
                      +|+|||++++.++..+..|+..+..... .+.|+++++||+|+.  ....+..+++..++...+ ++++++||+++.|++
T Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~  168 (184)
T 3ihw_A           89 VVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVE  168 (184)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHH
Confidence            9999999999999999999999877653 579999999999994  456678889999999987 899999999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 028251          158 EAFIKTAAKILQNIQ  172 (211)
Q Consensus       158 ~~~~~i~~~~~~~~~  172 (211)
                      ++|++|.+.+.+..+
T Consensus       169 ~lf~~l~~~i~~~~~  183 (184)
T 3ihw_A          169 RVFQDVAQKVVALRK  183 (184)
T ss_dssp             HHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999998877643

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=100.00  E-value=7.2e-32  Score=194.08  Aligned_cols=164  Identities=35%  Similarity=0.554  Sum_probs=143.7

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ..++|+++|++|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+||+||++.+...+..++..+|++|+
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEE-EEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence            4689999999999999999999999887777777666554 446788888999999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Q 028251           85 VYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT  163 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i  163 (211)
                      |||++++.++..+..|+..+..... .+.|+++++||+|+.+.+....+++..++...+++++++||+++.|++++|++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  161 (168)
T 1u8z_A           82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL  161 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence            9999999999999999988877654 589999999999998777788889999999999999999999999999999999


Q ss_pred             HHHHHH
Q 028251          164 AAKILQ  169 (211)
Q Consensus       164 ~~~~~~  169 (211)
                      .+.+.+
T Consensus       162 ~~~i~~  167 (168)
T 1u8z_A          162 MREIRA  167 (168)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            988753

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=100.00  E-value=1.1e-31  Score=193.02  Aligned_cols=164  Identities=32%  Similarity=0.536  Sum_probs=145.8

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ..++|+++|++|+|||||+++|.++.+...+.++.+... ...+.+++....+.+||+||++.+..++..++..+|++++
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~   80 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence            468999999999999999999999988877777766444 5567889999999999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Q 028251           85 VYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT  163 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i  163 (211)
                      |||++++.++..+..|+..+..... .+.|+++|+||+|+.+.+....++...++...+++++++||+++.|++++|++|
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  160 (167)
T 1kao_A           81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI  160 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHH
Confidence            9999999999999999888876543 589999999999998777778888899999999999999999999999999999


Q ss_pred             HHHHHH
Q 028251          164 AAKILQ  169 (211)
Q Consensus       164 ~~~~~~  169 (211)
                      .+.+.+
T Consensus       161 ~~~~~~  166 (167)
T 1kao_A          161 VRQMNY  166 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            887743

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=100.00  E-value=5.7e-33  Score=206.96  Aligned_cols=173  Identities=29%  Similarity=0.486  Sum_probs=116.3

Q ss_pred             CCCceeeEEEEcCCCCCHHHHHHHHHhC--CCCCCCCCCeeeEEEEEEEEECCE--EEEEEEEeCCCccchhhchHHHhc
Q 028251            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDK--RFQPVHDLTIGVEFGARMVTIDGR--PIKLQIWDTAGQESFRSITRSYYR   77 (211)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~   77 (211)
                      .....++|+|+|++|+|||||+++|++.  .+...+.++.+.++....+.+++.  .+.+.+||+||++.+...+..+++
T Consensus        16 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   95 (208)
T 2yc2_C           16 TATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWN   95 (208)
T ss_dssp             SEEEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCC
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHh
Confidence            3456799999999999999999999988  777777777777777777888876  889999999999999999999999


Q ss_pred             cccEEEEEEECCCHHHHHHHHHHHHHHHHhcC---CCCeEEEEEecCCCCC-CCCCCHHHHHHHHHHcCCcEEEEeCCC-
Q 028251           78 GAAGALLVYDITRRETFNHLSSWLEDARQHAN---PNMSIMLVGNKCDLAH-RRAVSKEEGEQFAKENGLLFLEASART-  152 (211)
Q Consensus        78 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~-  152 (211)
                      .+|++|+|||++++.++..+..|+..+.....   .+.|+++|+||+|+.+ .+.+..+++..++...+++++++||++ 
T Consensus        96 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~  175 (208)
T 2yc2_C           96 GVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPP  175 (208)
T ss_dssp             CCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC---
T ss_pred             hCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCC
Confidence            99999999999999999999999999988765   5899999999999987 677788899999999999999999999 


Q ss_pred             CCCHHHHHHHHHHHHHHHHhhc
Q 028251          153 AQNVEEAFIKTAAKILQNIQEG  174 (211)
Q Consensus       153 ~~~i~~~~~~i~~~~~~~~~~~  174 (211)
                      +.|++++|++|.+.+.+.....
T Consensus       176 ~~gi~~l~~~i~~~~~~~~~~~  197 (208)
T 2yc2_C          176 GKDADAPFLSIATTFYRNYEDK  197 (208)
T ss_dssp             ----CHHHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999988776654

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=100.00  E-value=1.1e-31  Score=193.29  Aligned_cols=162  Identities=37%  Similarity=0.591  Sum_probs=144.0

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ..++|+++|++|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+||+||++.+...+..++..+|++++
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   80 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            3689999999999999999999999888877777776654 456678888899999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHc-CCcEEEEeCCCCCCHHHHHHH
Q 028251           85 VYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN-GLLFLEASARTAQNVEEAFIK  162 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~i~~~~~~  162 (211)
                      |||++++.++..+..|+..+.... ..+.|+++++||+|+.+.+.+..++...++... +.+++++||++|.|++++|++
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (167)
T 1c1y_A           81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD  160 (167)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHH
Confidence            999999999999999988887654 358999999999999877777888888888887 789999999999999999999


Q ss_pred             HHHHH
Q 028251          163 TAAKI  167 (211)
Q Consensus       163 i~~~~  167 (211)
                      |.+.+
T Consensus       161 l~~~i  165 (167)
T 1c1y_A          161 LVRQI  165 (167)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98876

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=100.00  E-value=2.3e-31  Score=194.92  Aligned_cols=167  Identities=35%  Similarity=0.540  Sum_probs=149.0

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ..++|+|+|++|+|||||+++|++..+...+.++.+..+. ..+.+++..+.+.+||+||++.+..++..++..+|++|+
T Consensus        17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   95 (187)
T 2a9k_A           17 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   95 (187)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEE-EEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEE
Confidence            5689999999999999999999999988777777666653 446788888999999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Q 028251           85 VYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT  163 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i  163 (211)
                      |||++++.++..+..|+..+..... .+.|+++|+||+|+.+.+....+++..++...+++++++||+++.|++++|++|
T Consensus        96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  175 (187)
T 2a9k_A           96 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDL  175 (187)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence            9999999999999999988877654 589999999999998777778888999999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q 028251          164 AAKILQNIQ  172 (211)
Q Consensus       164 ~~~~~~~~~  172 (211)
                      .+.+.++..
T Consensus       176 ~~~i~~~~~  184 (187)
T 2a9k_A          176 MREIRARKM  184 (187)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhhc
Confidence            999876543

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=100.00  E-value=1.1e-31  Score=193.19  Aligned_cols=163  Identities=28%  Similarity=0.412  Sum_probs=123.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+++|++|+|||||+++|.+...... .++.+.++ ...+.+++..+.+.+||+||++.+..++..+++.+|++++|
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   79 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   79 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence            58999999999999999999997665433 33445555 34567899999999999999999999999999999999999


Q ss_pred             EECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Q 028251           86 YDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA  164 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~  164 (211)
                      ||++++.++..+..|+..+.... ..+.|+++|+||+|+.+...+..++...++...+++++++||++|.|++++|++|.
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  159 (166)
T 3q72_A           80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV  159 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence            99999999999999998887653 36899999999999988788888999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 028251          165 AKILQN  170 (211)
Q Consensus       165 ~~~~~~  170 (211)
                      +.+.++
T Consensus       160 ~~~~~~  165 (166)
T 3q72_A          160 RQIRLR  165 (166)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            988654

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=100.00  E-value=4.9e-32  Score=203.53  Aligned_cols=168  Identities=24%  Similarity=0.448  Sum_probs=145.2

Q ss_pred             CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028251            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      ....+||+|+|++|||||||+++|++..+...+.++.+.++. ..+.+++..+.+.+|||+|++.+..++..+++.+|++
T Consensus        24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  102 (214)
T 3q3j_B           24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAV  102 (214)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEE-EEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEE
Confidence            346799999999999999999999999998888888887774 4567788889999999999999999999999999999


Q ss_pred             EEEEECCCHHHHHH-HHHHHHHHHHhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-cEEEE
Q 028251           83 LLVYDITRRETFNH-LSSWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENGL-LFLEA  148 (211)
Q Consensus        83 i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~  148 (211)
                      |+|||++++.++.. +..|+..+.... .+.|+++|+||+|+.+.            +.+..+++..++...++ +++++
T Consensus       103 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  181 (214)
T 3q3j_B          103 LLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEG  181 (214)
T ss_dssp             EEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEe
Confidence            99999999999998 688988887765 48999999999999753            56888999999999999 89999


Q ss_pred             eCCCCCC-HHHHHHHHHHHHHHHHh
Q 028251          149 SARTAQN-VEEAFIKTAAKILQNIQ  172 (211)
Q Consensus       149 s~~~~~~-i~~~~~~i~~~~~~~~~  172 (211)
                      ||+++.| ++++|+.|.+.+.....
T Consensus       182 SA~~g~g~v~~lf~~l~~~~~~~~~  206 (214)
T 3q3j_B          182 SAFTSEKSIHSIFRTASMLCLNKPS  206 (214)
T ss_dssp             CTTTCHHHHHHHHHHHHHHHHC---
T ss_pred             ccCCCcccHHHHHHHHHHHHhccCc
Confidence            9999998 99999999998875544

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.8e-31  Score=197.10  Aligned_cols=165  Identities=28%  Similarity=0.544  Sum_probs=144.2

Q ss_pred             CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028251            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      .....++|+++|++|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|+
T Consensus        14 ~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   92 (194)
T 2atx_A           14 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV   92 (194)
T ss_dssp             CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCE
Confidence            345789999999999999999999999988877777766665 3446678888899999999999999999999999999


Q ss_pred             EEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-cEEE
Q 028251           82 ALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENGL-LFLE  147 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~  147 (211)
                      +|+|||++++.++..+. .|+..+.... .+.|+++|+||+|+.+.            +.+..+++..++...+. ++++
T Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  171 (194)
T 2atx_A           93 FLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVE  171 (194)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEE
Confidence            99999999999999987 7888887764 38999999999999753            35777888999998887 8999


Q ss_pred             EeCCCCCCHHHHHHHHHHHHH
Q 028251          148 ASARTAQNVEEAFIKTAAKIL  168 (211)
Q Consensus       148 ~s~~~~~~i~~~~~~i~~~~~  168 (211)
                      +||++|.|++++|++|.+.++
T Consensus       172 ~Sa~~g~gi~~l~~~l~~~i~  192 (194)
T 2atx_A          172 CSALTQKGLKTVFDEAIIAIL  192 (194)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHH
T ss_pred             eeCCCCCCHHHHHHHHHHHHh
Confidence            999999999999999998775

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=100.00  E-value=2.1e-31  Score=197.81  Aligned_cols=169  Identities=30%  Similarity=0.509  Sum_probs=138.4

Q ss_pred             CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028251            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      ..+..++|+++|++|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..++..+|+
T Consensus        16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   94 (201)
T 2q3h_A           16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI   94 (201)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence            356789999999999999999999999888777777766555 4457788888999999999999999999999999999


Q ss_pred             EEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEecCCCCC------------CCCCCHHHHHHHHHHcCC-cEEE
Q 028251           82 ALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAH------------RRAVSKEEGEQFAKENGL-LFLE  147 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~  147 (211)
                      +|+|||++++.++..+. .|+..+.... .+.|+++|+||+|+.+            ...+..+++..++...+. ++++
T Consensus        95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  173 (201)
T 2q3h_A           95 FLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIE  173 (201)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEE
Confidence            99999999999999987 6888887765 3899999999999965            245677888889888887 8999


Q ss_pred             EeCCCCCCHHHHHHHHHHHHHHHHh
Q 028251          148 ASARTAQNVEEAFIKTAAKILQNIQ  172 (211)
Q Consensus       148 ~s~~~~~~i~~~~~~i~~~~~~~~~  172 (211)
                      +||+++.|++++|++|.+.+.+...
T Consensus       174 ~Sa~~g~gi~~l~~~l~~~~~~~~~  198 (201)
T 2q3h_A          174 CSALTQKNLKEVFDAAIVAGIQYSD  198 (201)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred             EecCCCCCHHHHHHHHHHHHhcccc
Confidence            9999999999999999999876644

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.2e-31  Score=200.73  Aligned_cols=168  Identities=27%  Similarity=0.366  Sum_probs=139.0

Q ss_pred             CCCceeeEEEEcCCCCCHHHHHHHHHhCCC--CCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc-hhhchHHHhcc
Q 028251            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRF--QPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES-FRSITRSYYRG   78 (211)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~-~~~~~~~~~~~   78 (211)
                      .++..+||+|+|++|||||||+++|++...  ...+ ++++.++....+.+++..+.+.+|||+|.+. +..+...+++.
T Consensus        33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~  111 (211)
T 2g3y_A           33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQV  111 (211)
T ss_dssp             --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCC
T ss_pred             cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhh
Confidence            456779999999999999999999996443  3333 3456677677788899999999999999876 44566677888


Q ss_pred             ccEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHH
Q 028251           79 AAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVE  157 (211)
Q Consensus        79 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  157 (211)
                      +|++|+|||++++.+|..+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++
T Consensus       112 a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~  191 (211)
T 2g3y_A          112 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVK  191 (211)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence            999999999999999999999988776543 2479999999999997766778888888888889999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028251          158 EAFIKTAAKILQN  170 (211)
Q Consensus       158 ~~~~~i~~~~~~~  170 (211)
                      ++|+.|.+.+..+
T Consensus       192 elf~~l~~~i~~~  204 (211)
T 2g3y_A          192 ELFEGIVRQVRLR  204 (211)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988543

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=100.00  E-value=1.3e-31  Score=196.45  Aligned_cols=166  Identities=27%  Similarity=0.499  Sum_probs=142.7

Q ss_pred             CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028251            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      ..+..++|+++|++|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+||+||++.+..++..+++.+|+
T Consensus         3 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   81 (184)
T 1m7b_A            3 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDA   81 (184)
T ss_dssp             ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             CCceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcE
Confidence            3567899999999999999999999999988777787776664 446778888999999999999999999999999999


Q ss_pred             EEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcC-CcEEE
Q 028251           82 ALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENG-LLFLE  147 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~  147 (211)
                      +|+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+.            +.+..+++..++...+ .++++
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e  160 (184)
T 1m7b_A           82 VLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIE  160 (184)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEE
Confidence            9999999999999998 67888887654 48999999999999642            4577788899998877 68999


Q ss_pred             EeCC-CCCCHHHHHHHHHHHHHH
Q 028251          148 ASAR-TAQNVEEAFIKTAAKILQ  169 (211)
Q Consensus       148 ~s~~-~~~~i~~~~~~i~~~~~~  169 (211)
                      +||+ ++.|++++|+.|.+.+++
T Consensus       161 ~Sa~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          161 CSALQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             CBTTTBHHHHHHHHHHHHHHHHT
T ss_pred             eeecCCCcCHHHHHHHHHHHHhc
Confidence            9999 689999999999988763

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=100.00  E-value=2.3e-31  Score=198.59  Aligned_cols=165  Identities=27%  Similarity=0.500  Sum_probs=143.0

Q ss_pred             CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028251            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      .++.+||+|+|++|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+|||||++.+..++..++..+|++
T Consensus        25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  103 (205)
T 1gwn_A           25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV  103 (205)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEE-EEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEE
Confidence            357899999999999999999999999988877788776664 4467788889999999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcC-CcEEEE
Q 028251           83 LLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENG-LLFLEA  148 (211)
Q Consensus        83 i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~  148 (211)
                      |+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+.            +.+..+++..++...+ .+++++
T Consensus       104 ilv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  182 (205)
T 1gwn_A          104 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  182 (205)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEe
Confidence            999999999999998 68888887654 48999999999999642            4577788889998887 689999


Q ss_pred             eCC-CCCCHHHHHHHHHHHHHH
Q 028251          149 SAR-TAQNVEEAFIKTAAKILQ  169 (211)
Q Consensus       149 s~~-~~~~i~~~~~~i~~~~~~  169 (211)
                      ||+ ++.|++++|+.|.+.++.
T Consensus       183 SAk~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          183 SALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             CTTTCHHHHHHHHHHHHHHHHH
T ss_pred             eeccCCcCHHHHHHHHHHHHhh
Confidence            999 689999999999988864

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.98  E-value=3.2e-30  Score=191.40  Aligned_cols=174  Identities=52%  Similarity=0.884  Sum_probs=153.6

Q ss_pred             CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028251            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      +++.++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..++..+|++
T Consensus         2 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~   81 (199)
T 2f9l_A            2 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGA   81 (199)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred             CcceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEE
Confidence            47889999999999999999999999998888888888888888889999999999999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Q 028251           83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK  162 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  162 (211)
                      ++|+|+.+..++..+..|+..+......+.|+++++||+|+.+......+++..++...++.++++|++++.+++++|+.
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~  161 (199)
T 2f9l_A           82 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKN  161 (199)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999998888988776655568999999999999876677788889999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccc
Q 028251          163 TAAKILQNIQEGAL  176 (211)
Q Consensus       163 i~~~~~~~~~~~~~  176 (211)
                      |.+.+.+.......
T Consensus       162 l~~~~~~~~~~~~~  175 (199)
T 2f9l_A          162 ILTEIYRIVSQKQI  175 (199)
T ss_dssp             HHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHhhccC
Confidence            99999877654443

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.98  E-value=7.9e-31  Score=189.45  Aligned_cols=162  Identities=31%  Similarity=0.455  Sum_probs=141.5

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ..++|+++|++|+|||||+++|++..+...+.++.+.++. ..+..++..+.+.+|||||++.+...+..++..+|++|+
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   80 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence            4689999999999999999999998887777777665554 346678888899999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Q 028251           85 VYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK  162 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  162 (211)
                      |||++++.++..+..|+..+.....  .+.|+++++||+|+.+.+.+..++...++...+++++++||+++.|++++|++
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (172)
T 2erx_A           81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE  160 (172)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence            9999999999999889888776542  47999999999999877777778888888888999999999999999999999


Q ss_pred             HHHHH
Q 028251          163 TAAKI  167 (211)
Q Consensus       163 i~~~~  167 (211)
                      |.+.+
T Consensus       161 l~~~~  165 (172)
T 2erx_A          161 LLNLE  165 (172)
T ss_dssp             HHHTC
T ss_pred             HHHHH
Confidence            98755

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.98  E-value=4e-30  Score=184.45  Aligned_cols=161  Identities=34%  Similarity=0.596  Sum_probs=142.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .++|+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..++..+|++++|
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence            58999999999999999999999988777777755544 44567888889999999999999999999999999999999


Q ss_pred             EECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Q 028251           86 YDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA  164 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~  164 (211)
                      ||++++.++..+..|+..+..... .+.|+++++||+|+.+ .....++...++...+++++++|++++.|+++++++|.
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  160 (166)
T 2ce2_X           82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV  160 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence            999999999999999988876653 4799999999999976 45667888899999999999999999999999999999


Q ss_pred             HHHH
Q 028251          165 AKIL  168 (211)
Q Consensus       165 ~~~~  168 (211)
                      +.+.
T Consensus       161 ~~~~  164 (166)
T 2ce2_X          161 REIR  164 (166)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8874

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.98  E-value=1.6e-30  Score=193.24  Aligned_cols=163  Identities=32%  Similarity=0.574  Sum_probs=142.9

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      +..++|+++|++|+|||||+++|.+..+...+.++.+.++.. .+.+++..+.+.+||+||++.+..++..++..+|++|
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEE-EEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEE-EEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence            467899999999999999999999999887777777766653 3678888899999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-cEEEEe
Q 028251           84 LVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENGL-LFLEAS  149 (211)
Q Consensus        84 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~s  149 (211)
                      +|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+.            +.+..+++..++...+. +++++|
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  180 (201)
T 2gco_A          102 MCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS  180 (201)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee
Confidence            99999999999998 57777776654 48999999999999764            45677888889988888 899999


Q ss_pred             CCCCCCHHHHHHHHHHHHH
Q 028251          150 ARTAQNVEEAFIKTAAKIL  168 (211)
Q Consensus       150 ~~~~~~i~~~~~~i~~~~~  168 (211)
                      |+++.|++++|++|.+.++
T Consensus       181 A~~g~gi~~l~~~i~~~~l  199 (201)
T 2gco_A          181 AKTKEGVREVFEMATRAGL  199 (201)
T ss_dssp             TTTCTTHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHh
Confidence            9999999999999998875

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.98  E-value=4.6e-30  Score=188.88  Aligned_cols=165  Identities=35%  Similarity=0.595  Sum_probs=134.9

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ..++|+++|.+|||||||+++|++..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..++..+|++|+
T Consensus        20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   98 (190)
T 3con_A           20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   98 (190)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEEEE
T ss_pred             ceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEE
Confidence            568999999999999999999999988777777755554 3457788888999999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Q 028251           85 VYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT  163 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i  163 (211)
                      |||++++.++..+..|+..+..... .+.|+++|+||+|+.. .....+++.+++...+++++++||+++.|++++|++|
T Consensus        99 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  177 (190)
T 3con_A           99 VFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTL  177 (190)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999888876553 5799999999999976 4567788899999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 028251          164 AAKILQNI  171 (211)
Q Consensus       164 ~~~~~~~~  171 (211)
                      .+.+.+..
T Consensus       178 ~~~~~~~~  185 (190)
T 3con_A          178 VREIRQYR  185 (190)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHHH
Confidence            99887643

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.98  E-value=1.6e-31  Score=200.92  Aligned_cols=170  Identities=31%  Similarity=0.499  Sum_probs=146.7

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEEC-CEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID-GRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      +..++|+|+|++|||||||+++|++..+...+.++.+.+.....+... +..+.+.+|||||++.+..++..++..+|++
T Consensus         9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   88 (218)
T 4djt_A            9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGA   88 (218)
T ss_dssp             -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEE
T ss_pred             cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEE
Confidence            467999999999999999999999888877777777777766665554 3447899999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Q 028251           83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK  162 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  162 (211)
                      |+|||++++.++..+..|+..+......+.|+++|+||+|+.+...+..++...++...+++++++||++|.|++++|++
T Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~  168 (218)
T 4djt_A           89 ILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLH  168 (218)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHH
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Confidence            99999999999999999999998877767999999999999877678888888888889999999999999999999999


Q ss_pred             HHHHHHHHHhh
Q 028251          163 TAAKILQNIQE  173 (211)
Q Consensus       163 i~~~~~~~~~~  173 (211)
                      |.+.+.+....
T Consensus       169 l~~~~~~~~~~  179 (218)
T 4djt_A          169 LARIFTGRPDL  179 (218)
T ss_dssp             HHHHHHCCTTC
T ss_pred             HHHHHhccccc
Confidence            99988766544

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.98  E-value=6.3e-32  Score=197.28  Aligned_cols=166  Identities=31%  Similarity=0.611  Sum_probs=126.4

Q ss_pred             CCCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhcccc
Q 028251            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA   80 (211)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d   80 (211)
                      |+....++|+++|++|+|||||+++|....+...+.++.+..+.. .+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus         3 ~~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   81 (182)
T 3bwd_D            3 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGAD   81 (182)
T ss_dssp             ----CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBC-CCC-------CEEECCCC-CTTTTTGGGGGTTCS
T ss_pred             CCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEE-EEEECCEEEEEEEEECCCChhhhhhHHhhccCCC
Confidence            677788999999999999999999999998877777766544432 2456677788899999999999999999999999


Q ss_pred             EEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEecCCCCCCCC----------CCHHHHHHHHHHcCC-cEEEE
Q 028251           81 GALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRRA----------VSKEEGEQFAKENGL-LFLEA  148 (211)
Q Consensus        81 ~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~  148 (211)
                      ++|+|||++++.++..+. .|+..+.... .+.|+++|+||+|+.+...          +..+++..++...+. +++++
T Consensus        82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  160 (182)
T 3bwd_D           82 VFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIEC  160 (182)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEE
Confidence            999999999999999987 6888887764 3899999999999965433          367788888888886 89999


Q ss_pred             eCCCCCCHHHHHHHHHHHHH
Q 028251          149 SARTAQNVEEAFIKTAAKIL  168 (211)
Q Consensus       149 s~~~~~~i~~~~~~i~~~~~  168 (211)
                      ||+++.|++++|+.|.+.++
T Consensus       161 Sa~~~~gi~~l~~~l~~~i~  180 (182)
T 3bwd_D          161 SSKSQENVKGVFDAAIRVVL  180 (182)
T ss_dssp             CTTTCTTHHHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHHHHHh
Confidence            99999999999999988764

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.98  E-value=2.4e-30  Score=189.42  Aligned_cols=163  Identities=31%  Similarity=0.580  Sum_probs=142.3

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ...++|+++|++|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..++..+|++|
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   81 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence            3578999999999999999999999988777777766555 345678899999999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-cEEEEe
Q 028251           84 LVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENGL-LFLEAS  149 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~s  149 (211)
                      +|||++++.++..+. .|+..+..... +.|+++|+||+|+.+.            +.+..+++..++...+. +++++|
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  160 (186)
T 1mh1_A           82 ICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  160 (186)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHST-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCChhhHHHHHHHHHHHHHHhCC-CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence            999999999999987 68888776543 8999999999999653            45677788889888887 899999


Q ss_pred             CCCCCCHHHHHHHHHHHHH
Q 028251          150 ARTAQNVEEAFIKTAAKIL  168 (211)
Q Consensus       150 ~~~~~~i~~~~~~i~~~~~  168 (211)
                      |++|.|++++|+.|.+.+.
T Consensus       161 a~~g~gi~~l~~~l~~~~~  179 (186)
T 1mh1_A          161 ALTQRGLKTVFDEAIRAVL  179 (186)
T ss_dssp             TTTCTTHHHHHHHHHHHHS
T ss_pred             CCCccCHHHHHHHHHHHHh
Confidence            9999999999999998874

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.97  E-value=1.9e-31  Score=196.99  Aligned_cols=168  Identities=20%  Similarity=0.256  Sum_probs=137.1

Q ss_pred             CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCC-----------CCCeeeEEEEEEE-EECCEEEEEEEEeCCCccchh
Q 028251            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-----------DLTIGVEFGARMV-TIDGRPIKLQIWDTAGQESFR   69 (211)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~l~l~D~~G~~~~~   69 (211)
                      ..+..+||+|+|++|||||||++.+.+. +...+           .++.+.++....+ .+++..+.+.+|||||++.+.
T Consensus        10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~   88 (198)
T 3t1o_A           10 NREINFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN   88 (198)
T ss_dssp             TTEEEEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred             ccccccEEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence            4567899999999999999999766654 33332           2344455544444 567778899999999999999


Q ss_pred             hchHHHhccccEEEEEEECC------CHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC
Q 028251           70 SITRSYYRGAAGALLVYDIT------RRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL  143 (211)
Q Consensus        70 ~~~~~~~~~~d~~i~v~d~~------~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~  143 (211)
                      .++..+++.+|++|+|||++      +..++..+..|+..+. ....+.|+++|+||+|+.+.  ...+++..++...++
T Consensus        89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~-~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~  165 (198)
T 3t1o_A           89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG-LTLDDVPIVIQVNKRDLPDA--LPVEMVRAVVDPEGK  165 (198)
T ss_dssp             HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT-CCTTSSCEEEEEECTTSTTC--CCHHHHHHHHCTTCC
T ss_pred             HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc-cccCCCCEEEEEEchhcccc--cCHHHHHHHHHhcCC
Confidence            99999999999999999999      5567777777777763 23358999999999999653  677889999999998


Q ss_pred             -cEEEEeCCCCCCHHHHHHHHHHHHHHHHhh
Q 028251          144 -LFLEASARTAQNVEEAFIKTAAKILQNIQE  173 (211)
Q Consensus       144 -~~~~~s~~~~~~i~~~~~~i~~~~~~~~~~  173 (211)
                       +++++||++|.|++++|++|.+.+.++..+
T Consensus       166 ~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~~  196 (198)
T 3t1o_A          166 FPVLEAVATEGKGVFETLKEVSRLVLARVAG  196 (198)
T ss_dssp             SCEEECBGGGTBTHHHHHHHHHHHHHHHHC-
T ss_pred             ceEEEEecCCCcCHHHHHHHHHHHHHHHhhc
Confidence             999999999999999999999999887654

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.97  E-value=2.6e-30  Score=190.93  Aligned_cols=167  Identities=27%  Similarity=0.378  Sum_probs=137.2

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCC--CCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc-hhhchHHHhcccc
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKR--FQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES-FRSITRSYYRGAA   80 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~-~~~~~~~~~~~~d   80 (211)
                      ++.+||+++|++|||||||+++|++..  +...+ ++++.++....+.+++..+.+.+|||+|.+. ...+...+++.+|
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~   82 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD   82 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence            457999999999999999999999643  33333 3456666667788899999999999999876 4556777888999


Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Q 028251           81 GALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEA  159 (211)
Q Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~  159 (211)
                      ++|+|||++++.+|..+..|+..+.... ..+.|+++++||+|+.+.+.+..+++..++...+++++++||++|.|++++
T Consensus        83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l  162 (192)
T 2cjw_A           83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL  162 (192)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence            9999999999999999999988877653 357999999999999766677778888888888999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028251          160 FIKTAAKILQNI  171 (211)
Q Consensus       160 ~~~i~~~~~~~~  171 (211)
                      |+.|.+.+....
T Consensus       163 f~~l~~~~~~~~  174 (192)
T 2cjw_A          163 FEGIVRQVRLRR  174 (192)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhc
Confidence            999999886554

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.97  E-value=1.5e-30  Score=195.30  Aligned_cols=164  Identities=30%  Similarity=0.589  Sum_probs=123.3

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ..++|+++|++|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..++..+|++|+
T Consensus        33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~  111 (214)
T 2j1l_A           33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL  111 (214)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence            568999999999999999999999888777777765554 4456788999999999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-cEEEEeC
Q 028251           85 VYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENGL-LFLEASA  150 (211)
Q Consensus        85 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~  150 (211)
                      |||++++.++..+. .|+..+.... .+.|+++|+||+|+...            +.+..+++..++...++ +++++||
T Consensus       112 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA  190 (214)
T 2j1l_A          112 CFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSA  190 (214)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBT
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecC
Confidence            99999999999986 6888877654 47999999999999754            25677788889988887 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHH
Q 028251          151 RTAQNVEEAFIKTAAKILQN  170 (211)
Q Consensus       151 ~~~~~i~~~~~~i~~~~~~~  170 (211)
                      ++|.|++++|+.|.+.+.+.
T Consensus       191 ~~g~gi~el~~~l~~~~~~~  210 (214)
T 2j1l_A          191 RLHDNVHAVFQEAAEVALSS  210 (214)
T ss_dssp             TTTBSHHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999988754

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=2.9e-30  Score=192.73  Aligned_cols=164  Identities=29%  Similarity=0.561  Sum_probs=137.7

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ...++|+++|++|+|||||+++|++..+...+.++.+..+... +.+++..+.+.+|||||++.+...+..++..+|++|
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEE-EEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEE-EEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence            4678999999999999999999999998877777766666544 678888899999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-cEEEEe
Q 028251           84 LVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENGL-LFLEAS  149 (211)
Q Consensus        84 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~s  149 (211)
                      +|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+.            +.+..+++..++...+. +++++|
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  180 (207)
T 2fv8_A          102 MCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS  180 (207)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence            99999999999988 57777776654 48999999999999654            45677788888888887 899999


Q ss_pred             CCCCCCHHHHHHHHHHHHHH
Q 028251          150 ARTAQNVEEAFIKTAAKILQ  169 (211)
Q Consensus       150 ~~~~~~i~~~~~~i~~~~~~  169 (211)
                      |++|.|++++|++|.+.+++
T Consensus       181 A~~g~gi~el~~~l~~~i~~  200 (207)
T 2fv8_A          181 AKTKEGVREVFETATRAALQ  200 (207)
T ss_dssp             TTTCTTHHHHHHHHHHHHHS
T ss_pred             CCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999998864

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.97  E-value=6.7e-34  Score=211.22  Aligned_cols=167  Identities=52%  Similarity=0.940  Sum_probs=141.3

Q ss_pred             CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028251            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      +++.++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus        30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~  109 (199)
T 3l0i_B           30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI  109 (199)
T ss_dssp             CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEE
Confidence            46789999999999999999999999888877777878888888889999999999999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Q 028251           83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK  162 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  162 (211)
                      |+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+....++...++...+++++++||+++.|++++|++
T Consensus       110 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~  189 (199)
T 3l0i_B          110 IVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMT  189 (199)
T ss_dssp             EECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence            99999999999999999999997776678999999999999876666666778888889999999999999999999999


Q ss_pred             HHHHHHH
Q 028251          163 TAAKILQ  169 (211)
Q Consensus       163 i~~~~~~  169 (211)
                      |.+.+.+
T Consensus       190 l~~~l~~  196 (199)
T 3l0i_B          190 MAAEIKK  196 (199)
T ss_dssp             HTTTTTT
T ss_pred             HHHHHHH
Confidence            9876643

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.97  E-value=3.5e-30  Score=191.95  Aligned_cols=162  Identities=30%  Similarity=0.584  Sum_probs=137.8

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ...++|+++|++|+|||||+++|+...+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..++..+|++|
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  106 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  106 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEE-EEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeeccee-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence            3579999999999999999999999988877777765444 445677888899999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEecCCCCCCC------------CCCHHHHHHHHHHcCC-cEEEEe
Q 028251           84 LVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRR------------AVSKEEGEQFAKENGL-LFLEAS  149 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~s  149 (211)
                      +|||++++.++..+. .|+..+.... .+.|+++|+||+|+.+..            .+..+++..++...+. +++++|
T Consensus       107 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  185 (204)
T 4gzl_A          107 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  185 (204)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEee
Confidence            999999999999987 7887777665 589999999999996543            2677788889988886 599999


Q ss_pred             CCCCCCHHHHHHHHHHHH
Q 028251          150 ARTAQNVEEAFIKTAAKI  167 (211)
Q Consensus       150 ~~~~~~i~~~~~~i~~~~  167 (211)
                      |++|.|++++|++|.+.+
T Consensus       186 A~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          186 ALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             TTTCTTHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            999999999999998754

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.97  E-value=6.7e-31  Score=198.04  Aligned_cols=167  Identities=30%  Similarity=0.572  Sum_probs=147.1

Q ss_pred             CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028251            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      ....+||+|+|++|||||||+++|+.+.+...+.++.+.+.....+.+++..+.+.+|||||++.+..++..+++.+|++
T Consensus        12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   91 (221)
T 3gj0_A           12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCA   91 (221)
T ss_dssp             CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEE
Confidence            35779999999999999999999887777777778888889888889999999999999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Q 028251           83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK  162 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  162 (211)
                      |+|||++++.++..+..|+..+.... .+.|+++|+||+|+.+... . .+...++...+++++++||+++.|++++|++
T Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~-~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  168 (221)
T 3gj0_A           92 IIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV-K-AKSIVFHRKKNLQYYDISAKSNYNFEKPFLW  168 (221)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTSSSCSS-C-GGGCCHHHHHTCEEEECBGGGTBTTTHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCccccccc-c-HHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999988765 3899999999999975433 2 3555677778999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 028251          163 TAAKILQNIQ  172 (211)
Q Consensus       163 i~~~~~~~~~  172 (211)
                      |.+.+.....
T Consensus       169 l~~~l~~~~~  178 (221)
T 3gj0_A          169 LARKLIGDPN  178 (221)
T ss_dssp             HHHHHHTCTT
T ss_pred             HHHHHHhCcc
Confidence            9998876543

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.97  E-value=5.2e-29  Score=183.82  Aligned_cols=166  Identities=54%  Similarity=0.915  Sum_probs=150.3

Q ss_pred             CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028251            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      ++++.++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..++..+++
T Consensus        25 ~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~  104 (191)
T 1oix_A           25 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVG  104 (191)
T ss_dssp             CCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCE
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCE
Confidence            45678999999999999999999999999888888888999888889999999999999999999999999999999999


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028251           82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  161 (211)
                      +++|+|..+..++.++..|+..+......+.|+++++||+|+.+......+++..++...++.++++|++++.+++++|+
T Consensus       105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~  184 (191)
T 1oix_A          105 ALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQ  184 (191)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999998888888877665556789999999999987667778889999999999999999999999999999


Q ss_pred             HHHHHH
Q 028251          162 KTAAKI  167 (211)
Q Consensus       162 ~i~~~~  167 (211)
                      .|.+.+
T Consensus       185 ~l~~~i  190 (191)
T 1oix_A          185 TILTEI  190 (191)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998765

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.97  E-value=2.3e-30  Score=191.63  Aligned_cols=163  Identities=15%  Similarity=0.262  Sum_probs=129.1

Q ss_pred             CCceeeEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028251            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      .....+|+|+|++|||||||+++|++..+.. .+.++.+....  .+  +...+.+.+|||||++.+..++..+++.+|+
T Consensus        14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   89 (199)
T 4bas_A           14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--TF--EKGRVAFTVFDMGGAKKFRGLWETYYDNIDA   89 (199)
T ss_dssp             --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--EE--EETTEEEEEEEECCSGGGGGGGGGGCTTCSE
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--EE--EeCCEEEEEEECCCCHhHHHHHHHHHhcCCE
Confidence            4578999999999999999999999999887 67777774443  23  3445678999999999999999999999999


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcC--------CCCeEEEEEecCCCCCCCCCCHHHHHHH------HHHcCCcEEE
Q 028251           82 ALLVYDITRRETFNHLSSWLEDARQHAN--------PNMSIMLVGNKCDLAHRRAVSKEEGEQF------AKENGLLFLE  147 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~--------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~~  147 (211)
                      +|+|||++++.++..+..|+..+.....        .+.|+++|+||+|+.....  .++....      +...++++++
T Consensus        90 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  167 (199)
T 4bas_A           90 VIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT--AAELVEILDLTTLMGDHPFVIFA  167 (199)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC--HHHHHHHHTHHHHHTTSCEEEEE
T ss_pred             EEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC--HHHHHHHhcchhhccCCeeEEEE
Confidence            9999999999999999998888765421        2799999999999976422  2222211      1346778999


Q ss_pred             EeCCCCCCHHHHHHHHHHHHHHHH
Q 028251          148 ASARTAQNVEEAFIKTAAKILQNI  171 (211)
Q Consensus       148 ~s~~~~~~i~~~~~~i~~~~~~~~  171 (211)
                      +||+++.|++++|++|.+.+.++.
T Consensus       168 ~Sa~~g~gv~~l~~~l~~~~~~~~  191 (199)
T 4bas_A          168 SNGLKGTGVHEGFSWLQETASRQS  191 (199)
T ss_dssp             CBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred             eeCCCccCHHHHHHHHHHHHHHHh
Confidence            999999999999999999887654

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.96  E-value=1.5e-29  Score=182.79  Aligned_cols=159  Identities=22%  Similarity=0.314  Sum_probs=126.0

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ...++|+++|++|+|||||+++|.+..+.. ..++.+...  ..+.++  ...+.+|||||++.+...+..+++.+|++|
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   79 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFNV--ETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVI   79 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEE--EEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCccce--EEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence            356899999999999999999999888754 444545433  344555  467899999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHH-----HHHcCCcEEEEeCCCCCCHH
Q 028251           84 LVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQF-----AKENGLLFLEASARTAQNVE  157 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~i~  157 (211)
                      +|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+..  ..++....     +...+++++++||+++.|++
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  157 (171)
T 1upt_A           80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM--TSSEMANSLGLPALKDRKWQIFKTSATKGTGLD  157 (171)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC--CHHHHHHHhCchhccCCceEEEECcCCCCcCHH
Confidence            9999999999998888887775543 2589999999999996542  22333222     22245679999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028251          158 EAFIKTAAKILQ  169 (211)
Q Consensus       158 ~~~~~i~~~~~~  169 (211)
                      ++|++|.+.+.+
T Consensus       158 ~l~~~l~~~i~~  169 (171)
T 1upt_A          158 EAMEWLVETLKS  169 (171)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhh
Confidence            999999988754

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.96  E-value=5.4e-30  Score=183.97  Aligned_cols=156  Identities=19%  Similarity=0.318  Sum_probs=121.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+++|++|+|||||+++|++..+.. ..++.+.  ....+..  ..+.+.+||+||++.+...+..+++.+|++|+||
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   75 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF--NVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSC--CEEEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCce--eEEEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence            589999999999999999999887754 3445452  2233333  3467899999999999999999999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEeCCCCCCHHHHH
Q 028251           87 DITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQNVEEAF  160 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~~~~  160 (211)
                      |++++.++..+..|+..+... ...+.|+++|+||+|+.+..  ..++......     ..+++++++||+++.|++++|
T Consensus        76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  153 (164)
T 1r8s_A           76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  153 (164)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC--CHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence            999999999998888877553 23589999999999996532  2333322211     134569999999999999999


Q ss_pred             HHHHHHHHH
Q 028251          161 IKTAAKILQ  169 (211)
Q Consensus       161 ~~i~~~~~~  169 (211)
                      ++|.+.+.+
T Consensus       154 ~~l~~~i~~  162 (164)
T 1r8s_A          154 DWLSNQLRN  162 (164)
T ss_dssp             HHHHHHC--
T ss_pred             HHHHHHHhh
Confidence            999887643

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.96  E-value=1.5e-28  Score=180.97  Aligned_cols=159  Identities=18%  Similarity=0.268  Sum_probs=128.5

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCC-CCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKR-FQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      ...++|+|+|++|+|||||+++|++.. +...+.++.+  +....+.+++  ..+.+|||||++.+...+..++..+|++
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   94 (190)
T 2h57_A           19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAI   94 (190)
T ss_dssp             --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence            467999999999999999999999887 4555555555  3344455554  6789999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcC---CCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEeCCCCC
Q 028251           83 LLVYDITRRETFNHLSSWLEDARQHAN---PNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQ  154 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~  154 (211)
                      |+|||++++.++..+..|+..+.....   .+.|+++|+||+|+.+.  ...++......     ..+++++++||+++.
T Consensus        95 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  172 (190)
T 2h57_A           95 IFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVSQLLCLENIKDKPWHICASDAIKGE  172 (190)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTB
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHHHHhChhhccCCceEEEEccCCCCc
Confidence            999999999999999999888776543   48999999999999653  34555655553     135679999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 028251          155 NVEEAFIKTAAKIL  168 (211)
Q Consensus       155 ~i~~~~~~i~~~~~  168 (211)
                      |++++|++|.+.+.
T Consensus       173 gi~~l~~~l~~~i~  186 (190)
T 2h57_A          173 GLQEGVDWLQDQIQ  186 (190)
T ss_dssp             THHHHHHHHHHHC-
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999988764

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.96  E-value=4.6e-29  Score=185.07  Aligned_cols=155  Identities=23%  Similarity=0.297  Sum_probs=120.8

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ..++|+++|++|||||||+++|.+..+.. +.++.+.+  ...+.+++  +.+.+|||||++.+..++..+++.+|++|+
T Consensus        24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~   98 (198)
T 1f6b_A           24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF   98 (198)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCCc-cCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence            46799999999999999999999877643 44454443  34456666  678999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-----------------cCCcEE
Q 028251           85 VYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-----------------NGLLFL  146 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~  146 (211)
                      |||++++.++..+..|+..+.... ..+.|+++|+||+|+.+  ....+++.+++..                 .+.+++
T Consensus        99 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (198)
T 1f6b_A           99 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVF  176 (198)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEE
T ss_pred             EEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEEE
Confidence            999999999999999988876542 35899999999999965  4566777766552                 235699


Q ss_pred             EEeCCCCCCHHHHHHHHHHH
Q 028251          147 EASARTAQNVEEAFIKTAAK  166 (211)
Q Consensus       147 ~~s~~~~~~i~~~~~~i~~~  166 (211)
                      ++||++|.|++++|++|.+.
T Consensus       177 ~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          177 MCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             ECBTTTTBSHHHHHHHHHTT
T ss_pred             EEECCCCCCHHHHHHHHHHh
Confidence            99999999999999998754

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.96  E-value=8.7e-30  Score=187.36  Aligned_cols=160  Identities=18%  Similarity=0.292  Sum_probs=128.6

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ...++|+|+|++|+|||||+++|++..+...+.++.+.++..  +...  .+.+.+||+||++.+...+..++..+|++|
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   95 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAIV   95 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EEeC--CEEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence            357999999999999999999999998887777777776643  3333  567899999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEeCCCCCCHH
Q 028251           84 LVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQNVE  157 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~  157 (211)
                      +|||++++.++..+..|+..+.... ..+.|+++|+||+|+....  ..++......     ..+++++++||+++.|++
T Consensus        96 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~  173 (188)
T 1zd9_A           96 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDNID  173 (188)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECCCCCCHH
Confidence            9999999999999998888776542 2589999999999996532  2233222211     134579999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028251          158 EAFIKTAAKILQ  169 (211)
Q Consensus       158 ~~~~~i~~~~~~  169 (211)
                      ++|++|.+.+.+
T Consensus       174 ~l~~~l~~~~~~  185 (188)
T 1zd9_A          174 ITLQWLIQHSKS  185 (188)
T ss_dssp             HHHHHHHHTCC-
T ss_pred             HHHHHHHHHHHh
Confidence            999999887643

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.96  E-value=1.5e-28  Score=181.15  Aligned_cols=155  Identities=21%  Similarity=0.255  Sum_probs=126.1

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ..++|+++|++|||||||+++|.+..+.. +.++.+.+  ...+.+++  +.+.+|||||++.+...+..+++.+|++|+
T Consensus        22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   96 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF   96 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCc-cccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence            45799999999999999999999988753 44554553  34466666  678999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH------------cCCcEEEEeCC
Q 028251           85 VYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE------------NGLLFLEASAR  151 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~s~~  151 (211)
                      |||++++.++..+..|+..+.... ..+.|+++++||+|+.+  ....+++.+....            .+++++++||+
T Consensus        97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  174 (190)
T 1m2o_B           97 LVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVV  174 (190)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTT
T ss_pred             EEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeECC
Confidence            999999999999999988876542 25899999999999975  4556666655432            34579999999


Q ss_pred             CCCCHHHHHHHHHHH
Q 028251          152 TAQNVEEAFIKTAAK  166 (211)
Q Consensus       152 ~~~~i~~~~~~i~~~  166 (211)
                      +|.|++++|++|.+.
T Consensus       175 ~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          175 MRNGYLEAFQWLSQY  189 (190)
T ss_dssp             TTBSHHHHHHHHHTT
T ss_pred             cCCCHHHHHHHHHhh
Confidence            999999999998753

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.96  E-value=1.8e-28  Score=179.73  Aligned_cols=160  Identities=21%  Similarity=0.306  Sum_probs=128.4

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ...++|+++|++|+|||||+++|++.. ...+.++.+...  ..+.++  ...+.+|||||++.+...+..+++.+|++|
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   90 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNI--KTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLI   90 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEE--EEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccce--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            467999999999999999999999888 555666666443  344555  467889999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEeCCCCCCHH
Q 028251           84 LVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQNVE  157 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~  157 (211)
                      +|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+..  ..++......     ..+++++++||+++.|++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (186)
T 1ksh_A           91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL--SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL  168 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCC--CHHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence            9999999999999988888776542 2589999999999996542  3344333322     245679999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028251          158 EAFIKTAAKILQN  170 (211)
Q Consensus       158 ~~~~~i~~~~~~~  170 (211)
                      ++|++|.+.+.++
T Consensus       169 ~l~~~l~~~i~~~  181 (186)
T 1ksh_A          169 PGIDWLLDDISSR  181 (186)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999887544

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.96  E-value=1.5e-29  Score=185.48  Aligned_cols=163  Identities=23%  Similarity=0.414  Sum_probs=120.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhC--CCCCCCCCCeeeEEEEEEEEE---CCEEEEEEEEeCCCccchhhchHHHhcccc
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDK--RFQPVHDLTIGVEFGARMVTI---DGRPIKLQIWDTAGQESFRSITRSYYRGAA   80 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d   80 (211)
                      .+||+|+|++|||||||+++|.+.  .+...+.++.+.++....+.+   ++..+.+.+|||+|++.+..++..++..+|
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            579999999999999999999985  444556667777776655443   345678999999999999999999999999


Q ss_pred             EEEEEEECCCH-HHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCC---HHHHHHHHHHcCCc----EEEEeCCC
Q 028251           81 GALLVYDITRR-ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS---KEEGEQFAKENGLL----FLEASART  152 (211)
Q Consensus        81 ~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~----~~~~s~~~  152 (211)
                      ++++|||++++ .++..+..|+..+.... .+.|+++|+||+|+.+.....   .++...++...+++    ++++||++
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE  160 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence            99999999997 57888999998887654 479999999999996543221   22334555556776    99999999


Q ss_pred             CC-CHHHHHHHHHHHHHH
Q 028251          153 AQ-NVEEAFIKTAAKILQ  169 (211)
Q Consensus       153 ~~-~i~~~~~~i~~~~~~  169 (211)
                      +. +++++++.|.+.+.+
T Consensus       161 ~~~~~~~l~~~i~~~~~~  178 (184)
T 2zej_A          161 ESDALAKLRKTIINESLN  178 (184)
T ss_dssp             CCHHHHHHHHHHHHHHHC
T ss_pred             CchhHHHHHHHHHHHHhc
Confidence            96 899999888877654

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=3e-28  Score=178.85  Aligned_cols=160  Identities=24%  Similarity=0.336  Sum_probs=124.0

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ...++|+++|++|||||||+++|+++.+. .+.++.+..  ...+.+++  ..+.+|||||++.+...+..++..+|++|
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   88 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI   88 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            35789999999999999999999988775 444454433  33445554  67899999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEeCCCCCCHH
Q 028251           84 LVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQNVE  157 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~  157 (211)
                      +|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+.  ...++......     ..+++++++||++|.|++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (187)
T 1zj6_A           89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC  166 (187)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC--CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence            9999999999999999988886643 258999999999999653  33445444432     235679999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028251          158 EAFIKTAAKILQN  170 (211)
Q Consensus       158 ~~~~~i~~~~~~~  170 (211)
                      ++|++|.+.+...
T Consensus       167 ~l~~~l~~~~~~~  179 (187)
T 1zj6_A          167 QGLEWMMSRLKIR  179 (187)
T ss_dssp             HHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999877433

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.96  E-value=1.3e-27  Score=190.08  Aligned_cols=163  Identities=31%  Similarity=0.580  Sum_probs=142.9

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ..++|+++|.+|+|||||+++|+...+...+.++++..+ ...+.+++..+.+.+|||||++.+...+..++..+|++|+
T Consensus       154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~  232 (332)
T 2wkq_A          154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI  232 (332)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred             ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence            468999999999999999999999988877777766555 4456789999999999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-cEEEEeC
Q 028251           85 VYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENGL-LFLEASA  150 (211)
Q Consensus        85 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~  150 (211)
                      |||++++.++..+. .|+..+..... +.|+++|+||+|+.+.            ..+..+++..++...++ +++++||
T Consensus       233 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  311 (332)
T 2wkq_A          233 CFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  311 (332)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCT-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhhCC-CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecC
Confidence            99999999999887 67777776554 8999999999999653            45777888999999887 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHHH
Q 028251          151 RTAQNVEEAFIKTAAKILQ  169 (211)
Q Consensus       151 ~~~~~i~~~~~~i~~~~~~  169 (211)
                      ++|.|++++|+.|.+.++.
T Consensus       312 ~~~~gi~~l~~~l~~~~~~  330 (332)
T 2wkq_A          312 LTQRGLKTVFDEAIRAVLC  330 (332)
T ss_dssp             TTCTTHHHHHHHHHHHHHC
T ss_pred             CCCcCHHHHHHHHHHHHhc
Confidence            9999999999999988753

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.96  E-value=2.8e-29  Score=185.35  Aligned_cols=158  Identities=18%  Similarity=0.300  Sum_probs=118.4

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ...++|+|+|++|||||||+++|+...+.. ..++.+  +....+..+  .+.+.+||+||++.+...+..++..+|++|
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  101 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYK--NICFTVWDVGGQDKIRPLWRHYFQNTQGLI  101 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEET--TEEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            467999999999999999999999877653 233333  333334444  467899999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEeCCCCCCHH
Q 028251           84 LVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQNVE  157 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~  157 (211)
                      +|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+..  ..++......     ..+++++++||++|.|++
T Consensus       102 lv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~  179 (192)
T 2b6h_A          102 FVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM--PVSELTDKLGLQHLRSRTWYVQATCATQGTGLY  179 (192)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEECcCCCcCCHH
Confidence            9999999999999988888775532 2589999999999996532  2333322211     134569999999999999


Q ss_pred             HHHHHHHHHHH
Q 028251          158 EAFIKTAAKIL  168 (211)
Q Consensus       158 ~~~~~i~~~~~  168 (211)
                      ++|++|.+.+.
T Consensus       180 ~l~~~l~~~i~  190 (192)
T 2b6h_A          180 DGLDWLSHELS  190 (192)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHh
Confidence            99999988763

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.96  E-value=3.8e-28  Score=177.61  Aligned_cols=159  Identities=21%  Similarity=0.304  Sum_probs=123.4

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      +..++|+++|++|||||||+++|.+..+. .+.++.+..  ...+.++  .+.+.+||+||++.+...+..++..+|++|
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~~--~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   88 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFN--IKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILI   88 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEE--EEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCeE--EEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            56799999999999999999999987543 233444433  3344555  467889999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEeCCCCCCHH
Q 028251           84 LVYDITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQNVE  157 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~  157 (211)
                      +|||++++.++..+..|+..+... ...+.|+++++||+|+.+..  ..++......     ..+++++++||++|.|++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (181)
T 1fzq_A           89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA--PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ  166 (181)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC--CHHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence            999999999999998888776543 23589999999999997543  2333333221     134579999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028251          158 EAFIKTAAKILQ  169 (211)
Q Consensus       158 ~~~~~i~~~~~~  169 (211)
                      ++|++|.+.+.+
T Consensus       167 ~l~~~l~~~~~~  178 (181)
T 1fzq_A          167 DGMNWVCKNVNA  178 (181)
T ss_dssp             HHHHHHHHTC--
T ss_pred             HHHHHHHHHHHh
Confidence            999999887654

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.96  E-value=2.1e-28  Score=178.81  Aligned_cols=156  Identities=25%  Similarity=0.346  Sum_probs=123.5

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ...++|+|+|++|+|||||+++|++..+ ....++.+...  ..+.+++  ..+.+||+||++.+...+..++..+|++|
T Consensus        19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   93 (181)
T 2h17_A           19 SQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI   93 (181)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            4679999999999999999999998887 33444445333  3345554  67899999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEeCCCCCCHH
Q 028251           84 LVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQNVE  157 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~  157 (211)
                      +|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+.  ...++......     ..+++++++||+++.|++
T Consensus        94 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  171 (181)
T 2h17_A           94 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC  171 (181)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence            9999999999999988888776542 358999999999999653  33444444332     234579999999999999


Q ss_pred             HHHHHHHHH
Q 028251          158 EAFIKTAAK  166 (211)
Q Consensus       158 ~~~~~i~~~  166 (211)
                      ++|++|.+.
T Consensus       172 ~l~~~l~~~  180 (181)
T 2h17_A          172 QGLEWMMSR  180 (181)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHHhh
Confidence            999998754

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.96  E-value=3.1e-29  Score=184.34  Aligned_cols=160  Identities=19%  Similarity=0.290  Sum_probs=125.7

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ...++|+++|++|+|||||+++|....+.. ..++.+..  ...+.++  ...+.+|||||++.+...+..+++.+|++|
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   94 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN--LETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVI   94 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC--EEEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE--EEEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence            578999999999999999999998777643 34444433  3334455  467899999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHH-----HHcCCcEEEEeCCCCCCHH
Q 028251           84 LVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFA-----KENGLLFLEASARTAQNVE  157 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i~  157 (211)
                      +|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+..  ..++.....     ...+++++++||+++.|++
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  172 (189)
T 2x77_A           95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA--SEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV  172 (189)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC--CHHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence            9999999999998888887775543 2589999999999996542  223332221     1234579999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028251          158 EAFIKTAAKILQN  170 (211)
Q Consensus       158 ~~~~~i~~~~~~~  170 (211)
                      ++|++|.+.+.++
T Consensus       173 ~l~~~l~~~i~~~  185 (189)
T 2x77_A          173 EGMDWLVERLREQ  185 (189)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999888654

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.96  E-value=2e-28  Score=181.25  Aligned_cols=162  Identities=23%  Similarity=0.289  Sum_probs=120.7

Q ss_pred             CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEEC-CEEEEEEEEeCCCccchhhch---HHHhcc
Q 028251            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID-GRPIKLQIWDTAGQESFRSIT---RSYYRG   78 (211)
Q Consensus         3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~l~D~~G~~~~~~~~---~~~~~~   78 (211)
                      .++.+||+++|++|||||||++++.+.. ..........+.......+. +..+.+.+||+||++.+....   ..+++.
T Consensus        17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   95 (196)
T 3llu_A           17 QGSKPRILLMGLRRSGKSSIQKVVFHKM-SPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRG   95 (196)
T ss_dssp             ---CCEEEEEESTTSSHHHHHHHHHSCC-CGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHT
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHHhcC-CCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccccc
Confidence            3478999999999999999999887643 32222222222222223333 566789999999999988776   899999


Q ss_pred             ccEEEEEEECCCH--HHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCC-------CCCCHHHHHHHHH----HcCCcE
Q 028251           79 AAGALLVYDITRR--ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR-------RAVSKEEGEQFAK----ENGLLF  145 (211)
Q Consensus        79 ~d~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-------~~~~~~~~~~~~~----~~~~~~  145 (211)
                      +|++|+|||++++  +++..+..|+..+.... .+.|+++|+||+|+.+.       +.+..++...++.    ..++++
T Consensus        96 ~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  174 (196)
T 3llu_A           96 TGALIYVIDAQDDYMEALTRLHITVSKAYKVN-PDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSF  174 (196)
T ss_dssp             CSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC-TTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEE
T ss_pred             CCEEEEEEECCCchHHHHHHHHHHHHHHHhcC-CCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcce
Confidence            9999999999997  67777777777764433 48999999999998642       2334445566776    567889


Q ss_pred             EEEeCCCCCCHHHHHHHHHHHH
Q 028251          146 LEASARTAQNVEEAFIKTAAKI  167 (211)
Q Consensus       146 ~~~s~~~~~~i~~~~~~i~~~~  167 (211)
                      +++||++ .|++++|+.|.+.+
T Consensus       175 ~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          175 YLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             EEECTTS-THHHHHHHHHHHHT
T ss_pred             EEEEech-hhHHHHHHHHHHHh
Confidence            9999999 99999999998765

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.92  E-value=9.8e-31  Score=194.77  Aligned_cols=162  Identities=30%  Similarity=0.576  Sum_probs=135.4

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ...++|+++|++|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL  106 (204)
Confidence            4679999999999999999999998888777666655444 344566777888999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEecCCCCCCC------------CCCHHHHHHHHHHcCC-cEEEEe
Q 028251           84 LVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRR------------AVSKEEGEQFAKENGL-LFLEAS  149 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~s  149 (211)
                      +|||++++.++..+. .|+..+..... +.|+++|+||+|+.+..            .+..+++..++...+. +++++|
T Consensus       107 lv~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vS  185 (204)
T 3th5_A          107 ICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  185 (204)
Confidence            999999999998886 67777665443 79999999999996542            3445666777777787 899999


Q ss_pred             CCCCCCHHHHHHHHHHHH
Q 028251          150 ARTAQNVEEAFIKTAAKI  167 (211)
Q Consensus       150 ~~~~~~i~~~~~~i~~~~  167 (211)
                      |++|.|++++|+.|.+.+
T Consensus       186 A~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          186 ALTQRGLKTVFDEAIRAV  203 (204)
Confidence            999999999999988765

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.96  E-value=5.7e-28  Score=176.44  Aligned_cols=161  Identities=22%  Similarity=0.323  Sum_probs=124.6

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ...++|+++|++|||||||+++|.+..+ ..+.++.+..  ...+.+++  ..+.+||+||++.+...+..++..+|++|
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   90 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI   90 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            5689999999999999999999997776 3344454533  33345554  67899999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-----cCCcEEEEeCCCCCCHH
Q 028251           84 LVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-----NGLLFLEASARTAQNVE  157 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~i~  157 (211)
                      +|+|++++.++..+..|+..+.... ..+.|+++++||+|+.+.  ...++.......     .+++++++||+++.|++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (183)
T 1moz_A           91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT  168 (183)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence            9999999999999999888876543 358999999999999653  334444443322     23469999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 028251          158 EAFIKTAAKILQNI  171 (211)
Q Consensus       158 ~~~~~i~~~~~~~~  171 (211)
                      ++|++|.+.+.+++
T Consensus       169 ~l~~~l~~~~~~~q  182 (183)
T 1moz_A          169 EGLDWLIDVIKEEQ  182 (183)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999887654

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.95  E-value=1.4e-26  Score=175.32  Aligned_cols=167  Identities=19%  Similarity=0.104  Sum_probs=118.1

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCc------cch---hhchHH
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ------ESF---RSITRS   74 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~------~~~---~~~~~~   74 (211)
                      +..++|+|+|++|||||||+++|++..+.....+..+.+........++  ..+.+|||||.      +..   ......
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  104 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA  104 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence            4679999999999999999999998876533323323333333334443  56889999998      331   122344


Q ss_pred             HhccccEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHH---HHHHHHHHcC--CcEEE
Q 028251           75 YYRGAAGALLVYDITRRETFN--HLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE---EGEQFAKENG--LLFLE  147 (211)
Q Consensus        75 ~~~~~d~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~---~~~~~~~~~~--~~~~~  147 (211)
                      ++..+|++|+|||++++.++.  ....|+..+.... .+.|+++|+||+|+.+...+..+   ....++...+  +++++
T Consensus       105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (228)
T 2qu8_A          105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSS  183 (228)
T ss_dssp             HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEE
T ss_pred             hhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEE
Confidence            578889999999999987654  2234444444321 37999999999999776666544   4556666666  78999


Q ss_pred             EeCCCCCCHHHHHHHHHHHHHHHHhh
Q 028251          148 ASARTAQNVEEAFIKTAAKILQNIQE  173 (211)
Q Consensus       148 ~s~~~~~~i~~~~~~i~~~~~~~~~~  173 (211)
                      +||++|.|++++|++|.+.+.+....
T Consensus       184 ~SA~~g~gi~~l~~~l~~~i~~~~~~  209 (228)
T 2qu8_A          184 FSTLTGVGVEQAKITACELLKNDQAE  209 (228)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred             EecccCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998876654

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.95  E-value=4.7e-27  Score=169.29  Aligned_cols=153  Identities=21%  Similarity=0.204  Sum_probs=114.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchh------hchHHHhc--
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR------SITRSYYR--   77 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~------~~~~~~~~--   77 (211)
                      .++|+++|++|+|||||+++|.+..+.....++.+.+.....+.+++  ..+.+|||||++.+.      .+...++.  
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~   80 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE   80 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence            58999999999999999999998776554444444555555555665  468899999988764      33455654  


Q ss_pred             cccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHH
Q 028251           78 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVE  157 (211)
Q Consensus        78 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  157 (211)
                      .+|++++|+|+++.+.   ...|+..+..   .+.|+++|+||+|+........ +...++...+++++++||++|.|++
T Consensus        81 ~~~~~i~v~D~~~~~~---~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~  153 (165)
T 2wji_A           81 KPDLVVNIVDATALER---NLYLTLQLME---MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIE  153 (165)
T ss_dssp             CCSEEEEEEETTCHHH---HHHHHHHHHH---TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHH
T ss_pred             CCCEEEEEecCCchhH---hHHHHHHHHh---cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHH
Confidence            8999999999998643   3456666554   3799999999999864333332 3566777788999999999999999


Q ss_pred             HHHHHHHHHH
Q 028251          158 EAFIKTAAKI  167 (211)
Q Consensus       158 ~~~~~i~~~~  167 (211)
                      ++|++|.+.+
T Consensus       154 ~l~~~l~~~~  163 (165)
T 2wji_A          154 ELKKAISIAV  163 (165)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999988764

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.95  E-value=2.3e-27  Score=177.66  Aligned_cols=160  Identities=16%  Similarity=0.224  Sum_probs=114.2

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCE-EEEEEEEeCCCccchhh-chHHHhccccE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGR-PIKLQIWDTAGQESFRS-ITRSYYRGAAG   81 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~l~D~~G~~~~~~-~~~~~~~~~d~   81 (211)
                      ...++|+++|++|+|||||+++|++..+...+.++ +..+..  +.+++. .+.+.+|||||++.+.. ++..+++.+|+
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   81 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA   81 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence            46799999999999999999999999887766543 444433  555543 57899999999999988 78889999999


Q ss_pred             EEEEEECCCHH-HHHHHHHHHHHH-HH--hcCCCCeEEEEEecCCCCCCCCCC--HHHHHHHHH----------------
Q 028251           82 ALLVYDITRRE-TFNHLSSWLEDA-RQ--HANPNMSIMLVGNKCDLAHRRAVS--KEEGEQFAK----------------  139 (211)
Q Consensus        82 ~i~v~d~~~~~-~~~~~~~~~~~~-~~--~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~----------------  139 (211)
                      +|+|||+++.. ++.....|+..+ ..  ....+.|+++|+||+|+.......  .+.......                
T Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~  161 (214)
T 2fh5_B           82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS  161 (214)
T ss_dssp             EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---------
T ss_pred             EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCC
Confidence            99999999854 455555544443 32  123579999999999997543211  011111111                


Q ss_pred             -----------------Hc--CCcEEEEeCCCC------CCHHHHHHHHHHH
Q 028251          140 -----------------EN--GLLFLEASARTA------QNVEEAFIKTAAK  166 (211)
Q Consensus       140 -----------------~~--~~~~~~~s~~~~------~~i~~~~~~i~~~  166 (211)
                                       ..  +++|+++||++|      .|++++|++|.+.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          162 STAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             ---CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             ccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                             01  567999999999      9999999999875

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.95  E-value=3.3e-28  Score=187.24  Aligned_cols=164  Identities=27%  Similarity=0.423  Sum_probs=121.8

Q ss_pred             CCCceeeEEEEcCC---------CCCHHHHHHHHHh---CCCCCCCCCCe-eeEEEEEE--------------EEECCEE
Q 028251            2 SYDYLFKYIIIGDT---------GVGKSCLLLQFTD---KRFQPVHDLTI-GVEFGARM--------------VTIDGRP   54 (211)
Q Consensus         2 ~~~~~~~i~vvG~~---------~~GKSsli~~l~~---~~~~~~~~~~~-~~~~~~~~--------------~~~~~~~   54 (211)
                      ..++.+||+|+|.+         |||||||+++|++   ..+...+.+++ +.++....              ..+++..
T Consensus        15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   94 (255)
T 3c5h_A           15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE   94 (255)
T ss_dssp             SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred             CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence            35678999999999         9999999999998   55555555543 33322211              1246677


Q ss_pred             EEEEEEe-----------------------CCCccchhhchHHHhc---------------------cccEEEEEEECCC
Q 028251           55 IKLQIWD-----------------------TAGQESFRSITRSYYR---------------------GAAGALLVYDITR   90 (211)
Q Consensus        55 ~~l~l~D-----------------------~~G~~~~~~~~~~~~~---------------------~~d~~i~v~d~~~   90 (211)
                      +.+.|||                       ++|++++..++..++.                     ++|++|+|||+++
T Consensus        95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~  174 (255)
T 3c5h_A           95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR  174 (255)
T ss_dssp             -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred             EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence            8899999                       6666666666666666                     7999999999999


Q ss_pred             H--HHHHHHHHHHHHHHHh-cCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-cCCcEEEEeCCCCCCHHHHHHHHHHH
Q 028251           91 R--ETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAK  166 (211)
Q Consensus        91 ~--~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~i~~~~~~i~~~  166 (211)
                      +  .++..+..|+..+... ...+.|+++|+||+|+.+.+.+  ++...++.. .+++++++||+++.|++++|++|.+.
T Consensus       175 ~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~  252 (255)
T 3c5h_A          175 GMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQL  252 (255)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            8  8999999999888765 3358999999999999654332  566677766 47899999999999999999999887


Q ss_pred             H
Q 028251          167 I  167 (211)
Q Consensus       167 ~  167 (211)
                      +
T Consensus       253 l  253 (255)
T 3c5h_A          253 I  253 (255)
T ss_dssp             H
T ss_pred             h
Confidence            6

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.94  E-value=1.2e-26  Score=168.50  Aligned_cols=159  Identities=19%  Similarity=0.196  Sum_probs=119.8

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      +..++|+++|++|+|||||+++|++..+.....++.+.+.....+.+++..  +.+|||||++.+...+..++..+|++|
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~d~~i   83 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKK--ITFLDTPGHEAFTTMRARGAQVTDIVI   83 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEE--EEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCce--EEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence            467899999999999999999999988877766666666666666777654  679999999999999989999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHc-------C--CcEEEEeCCCCC
Q 028251           84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN-------G--LLFLEASARTAQ  154 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-------~--~~~~~~s~~~~~  154 (211)
                      +|+|++++......    ..+......+.|+++|+||+|+.+.   ..+.........       +  ++++++||+++.
T Consensus        84 ~v~d~~~~~~~~~~----~~l~~~~~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  156 (178)
T 2lkc_A           84 LVVAADDGVMPQTV----EAINHAKAANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKE  156 (178)
T ss_dssp             EEEETTCCCCHHHH----HHHHHHGGGSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSH
T ss_pred             EEEECCCCCcHHHH----HHHHHHHhCCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCC
Confidence            99999884221111    1122222347999999999999653   223333322221       1  479999999999


Q ss_pred             CHHHHHHHHHHHHHHHH
Q 028251          155 NVEEAFIKTAAKILQNI  171 (211)
Q Consensus       155 ~i~~~~~~i~~~~~~~~  171 (211)
                      |++++|++|.+.+....
T Consensus       157 gv~~l~~~l~~~~~~~~  173 (178)
T 2lkc_A          157 GLDHLLEMILLVSEMEE  173 (178)
T ss_dssp             HHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHhhhhhc
Confidence            99999999998775543

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.94  E-value=2.7e-26  Score=181.05  Aligned_cols=160  Identities=20%  Similarity=0.346  Sum_probs=125.4

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCC--C-CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccch-----hhchHHHh
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ--P-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF-----RSITRSYY   76 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~-----~~~~~~~~   76 (211)
                      ..+||+++|++|||||||+++|++....  . .+.+|.+..+.  .+.+++ .+.+.+||+||++.+     ...+..++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   78 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF   78 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence            4689999999999999999999977322  1 23344444444  344544 678999999999988     67888999


Q ss_pred             ccccEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEecCCCCC--CCC----CCHHHHHHHHHHcC---CcE
Q 028251           77 RGAAGALLVYDITRRETFNHLSSWLEDARQHA--NPNMSIMLVGNKCDLAH--RRA----VSKEEGEQFAKENG---LLF  145 (211)
Q Consensus        77 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~--~~~----~~~~~~~~~~~~~~---~~~  145 (211)
                      +.+|++|+|||++++.++..+..|...+....  .++.|+++++||+|+.+  .+.    ...+++.+++...+   +++
T Consensus        79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~  158 (307)
T 3r7w_A           79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG  158 (307)
T ss_dssp             TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence            99999999999999999999877765554432  35899999999999976  332    44467778888886   689


Q ss_pred             EEEeCCCCCCHHHHHHHHHHHHH
Q 028251          146 LEASARTAQNVEEAFIKTAAKIL  168 (211)
Q Consensus       146 ~~~s~~~~~~i~~~~~~i~~~~~  168 (211)
                      +++||++ .++.++|..+++.+.
T Consensus       159 ~~tSa~~-~~i~e~~~~iv~~li  180 (307)
T 3r7w_A          159 FPTSIWD-ESLYKAWSQIVCSLI  180 (307)
T ss_dssp             EECCTTS-SHHHHHHHHHHHTTC
T ss_pred             EEeeecC-ChHHHHHHHHHHHHc
Confidence            9999999 899999988876543

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.94  E-value=1.9e-26  Score=170.05  Aligned_cols=159  Identities=15%  Similarity=0.203  Sum_probs=109.8

Q ss_pred             CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCC----------ccchhhc
Q 028251            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG----------QESFRSI   71 (211)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G----------~~~~~~~   71 (211)
                      +.+..++|+|+|++|+|||||+++|++..+.....++.+.+.......+++   .+.+|||||          ++.+..+
T Consensus        19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~   95 (195)
T 1svi_A           19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRM   95 (195)
T ss_dssp             CCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHH
Confidence            445789999999999999999999998876555555556565555555544   478999999          6777777


Q ss_pred             hHHHhccc---cEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCH--HHHHH-HHHHcCCcE
Q 028251           72 TRSYYRGA---AGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK--EEGEQ-FAKENGLLF  145 (211)
Q Consensus        72 ~~~~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~~-~~~~~~~~~  145 (211)
                      +..++..+   |++++|+|++++.++.... ++..+..   .+.|+++|+||+|+.+......  +++.+ +....+.++
T Consensus        96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  171 (195)
T 1svi_A           96 IETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDEL  171 (195)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEE
T ss_pred             HHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCce
Confidence            88888777   9999999999876655432 2222222   3789999999999976543321  22222 222245789


Q ss_pred             EEEeCCCCCCHHHHHHHHHHHH
Q 028251          146 LEASARTAQNVEEAFIKTAAKI  167 (211)
Q Consensus       146 ~~~s~~~~~~i~~~~~~i~~~~  167 (211)
                      +++||+++.|++++|++|.+.+
T Consensus       172 ~~~Sa~~~~gv~~l~~~l~~~l  193 (195)
T 1svi_A          172 ILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEEccCCCCHHHHHHHHHHHh
Confidence            9999999999999999998765

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.94  E-value=2.4e-27  Score=188.66  Aligned_cols=158  Identities=19%  Similarity=0.302  Sum_probs=117.9

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ..++|+|+|++|+|||||+++|.+..+.... ++.+..+  ..+..  ..+.+.||||||++.+..++..+++.+|++|+
T Consensus       164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~~--~~~~~--~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil  238 (329)
T 3o47_A          164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF  238 (329)
T ss_dssp             CSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEEE--EEEEE--TTEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred             CcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceEE--EEEec--CcEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            4579999999999999999999988764432 3333333  22333  34678999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-----cCCcEEEEeCCCCCCHHH
Q 028251           85 VYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-----NGLLFLEASARTAQNVEE  158 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~i~~  158 (211)
                      |||++++.++..+..|+..+.... ..+.|++||+||+|+.+..  ..++.......     .+++++++||++|.|+++
T Consensus       239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~e  316 (329)
T 3o47_A          239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYE  316 (329)
T ss_dssp             EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHH
T ss_pred             EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc--CHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHH
Confidence            999999999999888877765433 3589999999999997543  23333332221     245699999999999999


Q ss_pred             HHHHHHHHHHH
Q 028251          159 AFIKTAAKILQ  169 (211)
Q Consensus       159 ~~~~i~~~~~~  169 (211)
                      +|+.|.+.+.+
T Consensus       317 l~~~l~~~l~~  327 (329)
T 3o47_A          317 GLDWLSNQLRN  327 (329)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHHh
Confidence            99999988743

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.94  E-value=7.6e-26  Score=165.91  Aligned_cols=159  Identities=19%  Similarity=0.184  Sum_probs=121.9

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchh------hchHHHhc
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR------SITRSYYR   77 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~------~~~~~~~~   77 (211)
                      ...++|+++|++|||||||+++|.+..+.....++.+.+.....+.+++  ..+.+|||||++.+.      .+...++.
T Consensus         5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   82 (188)
T 2wjg_A            5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYII   82 (188)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHh
Confidence            3578999999999999999999998765544455556666666666665  568899999988764      34555654


Q ss_pred             --cccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCC
Q 028251           78 --GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQN  155 (211)
Q Consensus        78 --~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  155 (211)
                        .+|++++|+|..+   +.....|+..+..   .+.|+++++||+|+....... ++...++...+++++++||+++.|
T Consensus        83 ~~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~  155 (188)
T 2wjg_A           83 NEKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMG  155 (188)
T ss_dssp             HHCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBS
T ss_pred             ccCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCC
Confidence              4899999999876   3445566666554   478999999999986543333 346677777889999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 028251          156 VEEAFIKTAAKILQNI  171 (211)
Q Consensus       156 i~~~~~~i~~~~~~~~  171 (211)
                      ++++|++|.+.+....
T Consensus       156 v~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          156 IEELKKAISIAVKDKK  171 (188)
T ss_dssp             HHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHHhcc
Confidence            9999999998875544

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.93  E-value=3.6e-26  Score=167.77  Aligned_cols=157  Identities=17%  Similarity=0.189  Sum_probs=115.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCC-----------ccchhhchHHH
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG-----------QESFRSITRSY   75 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G-----------~~~~~~~~~~~   75 (211)
                      ++|+++|++|+|||||+++|++..+.....++.+.  ....+.++    .+.+|||||           ++.+...+..+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~--~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   75 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTR--KIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   75 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTT--SCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccc--eeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence            68999999999999999999998877665554332  33334444    578999999           56677777777


Q ss_pred             hcc-ccEEEEEEECCCHHHHHHH-HHHHHH---------HHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCc
Q 028251           76 YRG-AAGALLVYDITRRETFNHL-SSWLED---------ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL  144 (211)
Q Consensus        76 ~~~-~d~~i~v~d~~~~~~~~~~-~~~~~~---------~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  144 (211)
                      +.. ++++++|+++.+..++..+ ..|...         +......+.|+++|+||+|+....   .++...++...+.+
T Consensus        76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~  152 (190)
T 2cxx_A           76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVP  152 (190)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCC
T ss_pred             HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhh
Confidence            776 7766666666666666665 445431         122223589999999999996543   46677788877764


Q ss_pred             -------EEEEeCCCCCCHHHHHHHHHHHHHHHHh
Q 028251          145 -------FLEASARTAQNVEEAFIKTAAKILQNIQ  172 (211)
Q Consensus       145 -------~~~~s~~~~~~i~~~~~~i~~~~~~~~~  172 (211)
                             ++++||++|.|++++|++|.+.+.+..+
T Consensus       153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~  187 (190)
T 2cxx_A          153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG  187 (190)
T ss_dssp             GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred             hhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence                   7999999999999999999998865443

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.93  E-value=2.8e-27  Score=185.78  Aligned_cols=158  Identities=18%  Similarity=0.252  Sum_probs=118.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCCCC---CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh---chHHHhccccE
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRFQP---VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS---ITRSYYRGAAG   81 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~---~~~~~~~~~d~   81 (211)
                      ||+++|+.|||||||++++.+.....   ...++.+.++..    ++ ..+.++||||||++++..   .+..+++.+++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~   75 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA   75 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence            68999999999999999887553322   244565655542    33 347899999999999974   46889999999


Q ss_pred             EEEEEECCCH--HHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCC-------CCCCHHHHHHHHHH----cCCcEEEE
Q 028251           82 ALLVYDITRR--ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR-------RAVSKEEGEQFAKE----NGLLFLEA  148 (211)
Q Consensus        82 ~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-------~~~~~~~~~~~~~~----~~~~~~~~  148 (211)
                      +|+|||++++  +....+..|+..+... .++.|+++++||+|+..+       +.+..++++++++.    .++.|+++
T Consensus        76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~-~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT  154 (331)
T 3r7w_B           76 LVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT  154 (331)
T ss_dssp             EEEECCCSSCTTHHHHHHHHHHHHHHHH-CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred             EEEEEECCchHHHHHHHHHHHHHHHhhc-CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence            9999999997  3333344444444433 358999999999999754       23455556666664    57889999


Q ss_pred             eCCCCCCHHHHHHHHHHHHHHHHh
Q 028251          149 SARTAQNVEEAFIKTAAKILQNIQ  172 (211)
Q Consensus       149 s~~~~~~i~~~~~~i~~~~~~~~~  172 (211)
                      ||++ .+|.++|..|.+.+..+.+
T Consensus       155 SAkd-~nV~eAFs~iv~~li~~~~  177 (331)
T 3r7w_B          155 SIFD-HSIYEAFSRIVQKLIPELS  177 (331)
T ss_dssp             CSSS-SHHHHHHHHHHTTSSTTHH
T ss_pred             ccCC-CcHHHHHHHHHHHHHhhHH
Confidence            9998 5999999999887765554

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.93  E-value=1.4e-25  Score=160.19  Aligned_cols=150  Identities=19%  Similarity=0.179  Sum_probs=105.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc-------hhhchHHHhcc
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES-------FRSITRSYYRG   78 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~-------~~~~~~~~~~~   78 (211)
                      .+|+++|++|+|||||+++|.+..+.. ...+..+.+.....+..++.  .+.+|||||...       +...+..++..
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            689999999999999999999887542 22333344444555566664  578999999886       34456678899


Q ss_pred             ccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEeCCCCCCHH
Q 028251           79 AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVE  157 (211)
Q Consensus        79 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~  157 (211)
                      +|++|+|+|++++.+...  .++..+...  .+.|+++|+||+|+.+..    ++..+++ ..++ +++++||+++.|++
T Consensus        80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~  150 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQAD--YEVAEYLRR--KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLE  150 (161)
T ss_dssp             CSEEEEEEESSSCCCHHH--HHHHHHHHH--HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred             CCEEEEEEECCCcccHhH--HHHHHHHHh--cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChH
Confidence            999999999988533221  222222222  378999999999996542    2233444 5666 79999999999999


Q ss_pred             HHHHHHHHHH
Q 028251          158 EAFIKTAAKI  167 (211)
Q Consensus       158 ~~~~~i~~~~  167 (211)
                      ++|++|.+.+
T Consensus       151 ~l~~~l~~~l  160 (161)
T 2dyk_A          151 ELLEAIWERL  160 (161)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999988753

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.93  E-value=6.4e-26  Score=164.51  Aligned_cols=153  Identities=22%  Similarity=0.244  Sum_probs=112.8

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhc--------hHHH
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI--------TRSY   75 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~--------~~~~   75 (211)
                      ...+|+++|++|+|||||+++|.+.... ....+..+.++....+.+++..  +.+|||||.+.+...        ...+
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMP--LHIIDTAGLREASDEVERIGIERAWQE   80 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEE--EEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeE--EEEEECCCcccchhHHHHHHHHHHHHH
Confidence            4579999999999999999999987643 2223333555555667777644  789999998653211        1245


Q ss_pred             hccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCC
Q 028251           76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQN  155 (211)
Q Consensus        76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  155 (211)
                      ++.+|++|+|||++++.++. ...|+..+......+.|+++|+||+|+.+...       .++...+.+++++||+++.|
T Consensus        81 ~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~g  152 (172)
T 2gj8_A           81 IEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEG  152 (172)
T ss_dssp             HHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTT
T ss_pred             HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCC
Confidence            78999999999999987765 34677777666555799999999999854221       01112456899999999999


Q ss_pred             HHHHHHHHHHHH
Q 028251          156 VEEAFIKTAAKI  167 (211)
Q Consensus       156 i~~~~~~i~~~~  167 (211)
                      ++++|+.|.+.+
T Consensus       153 v~~l~~~l~~~~  164 (172)
T 2gj8_A          153 VDVLRNHLKQSM  164 (172)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHh
Confidence            999999998765

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.93  E-value=3.9e-26  Score=192.66  Aligned_cols=166  Identities=19%  Similarity=0.260  Sum_probs=125.5

Q ss_pred             CCCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEE------EEE--CCEEEEEEEEeCCCccchhhch
Q 028251            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM------VTI--DGRPIKLQIWDTAGQESFRSIT   72 (211)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~l~l~D~~G~~~~~~~~   72 (211)
                      |.....+||+++|.+|||||||+++|++..+.....++.+.++....      +.+  ++..+.+.+||+||++.+....
T Consensus        36 ~~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~  115 (535)
T 3dpu_A           36 LVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASH  115 (535)
T ss_dssp             CBCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTC
T ss_pred             cccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHH
Confidence            34557899999999999999999999999888777777777766442      112  3345789999999999999999


Q ss_pred             HHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCC
Q 028251           73 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASART  152 (211)
Q Consensus        73 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  152 (211)
                      ..+++.+|++|+|+|+++.   ..+..|+..+..... +.|+++|+||+|+.+...+..++....+...+.+++++||++
T Consensus       116 ~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~-~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~  191 (535)
T 3dpu_A          116 QFFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG-KSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKN  191 (535)
T ss_dssp             HHHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS-SCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC--
T ss_pred             HHHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC-CCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCc
Confidence            9999999999999999765   445678888777653 799999999999987777788888888888899999999999


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q 028251          153 AQNVEEAFIKTAAKILQN  170 (211)
Q Consensus       153 ~~~i~~~~~~i~~~~~~~  170 (211)
                      |.|++++++.|.+.+.+.
T Consensus       192 g~gi~eL~~~l~~~~~~~  209 (535)
T 3dpu_A          192 GDGVESIAKSLKSAVLHP  209 (535)
T ss_dssp             ---CTTHHHHHHHHHTCT
T ss_pred             ccCHHHHHHHHHHHHhcc
Confidence            999999999998887543

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.93  E-value=1.1e-24  Score=171.95  Aligned_cols=163  Identities=17%  Similarity=0.082  Sum_probs=122.9

Q ss_pred             CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCC-eeeEEEEEEEEECCEEEEEEEEeCCCccchh----------h
Q 028251            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT-IGVEFGARMVTIDGRPIKLQIWDTAGQESFR----------S   70 (211)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~----------~   70 (211)
                      +....-.|+++|.+|||||||+|+|++..+......+ ++..........+ ...++.||||||.....          .
T Consensus         6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~~   84 (308)
T 3iev_A            6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMVE   84 (308)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHHH
Confidence            3456678999999999999999999999876433322 2222222223333 14568899999985443          5


Q ss_pred             chHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC--CcEEEE
Q 028251           71 ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG--LLFLEA  148 (211)
Q Consensus        71 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~  148 (211)
                      ....++..+|++++|+|++++.+......|+..+...   +.|+++|+||+|+........+....+....+  .+++++
T Consensus        85 ~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~---~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~v  161 (308)
T 3iev_A           85 IAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL---NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPI  161 (308)
T ss_dssp             HHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG---CCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEEC
T ss_pred             HHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc---CCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEE
Confidence            6677889999999999999987777776667766653   78999999999997444455566777777765  679999


Q ss_pred             eCCCCCCHHHHHHHHHHHHH
Q 028251          149 SARTAQNVEEAFIKTAAKIL  168 (211)
Q Consensus       149 s~~~~~~i~~~~~~i~~~~~  168 (211)
                      ||++|.|++++|+.|.+.+.
T Consensus       162 SA~~g~gv~~L~~~l~~~l~  181 (308)
T 3iev_A          162 SALKGANLDELVKTILKYLP  181 (308)
T ss_dssp             BTTTTBSHHHHHHHHHHHSC
T ss_pred             eCCCCCCHHHHHHHHHHhCc
Confidence            99999999999999887763

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.93  E-value=5.8e-25  Score=169.27  Aligned_cols=156  Identities=21%  Similarity=0.181  Sum_probs=117.6

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhc------hHHHh-
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI------TRSYY-   76 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~------~~~~~-   76 (211)
                      ...++|+++|++|||||||+|+|++..+.....+.++.......+...+  ..+.+||+||...+...      ...++ 
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~   80 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL   80 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence            4578999999999999999999998776544444444444444444444  57899999998876642      34555 


Q ss_pred             -ccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCC
Q 028251           77 -RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQN  155 (211)
Q Consensus        77 -~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  155 (211)
                       ..+|++|+|+|+++.+...   .|+..+..   .+.|+++++||+|+.....+. .+...++...+++++++||++|.|
T Consensus        81 ~~~~d~ii~V~D~t~~~~~~---~~~~~l~~---~~~pvilv~NK~Dl~~~~~i~-~~~~~l~~~lg~~vi~~SA~~g~g  153 (258)
T 3a1s_A           81 KGDADLVILVADSVNPEQSL---YLLLEILE---MEKKVILAMTAIDEAKKTGMK-IDRYELQKHLGIPVVFTSSVTGEG  153 (258)
T ss_dssp             HSCCSEEEEEEETTSCHHHH---HHHHHHHT---TTCCEEEEEECHHHHHHTTCC-BCHHHHHHHHCSCEEECCTTTCTT
T ss_pred             hcCCCEEEEEeCCCchhhHH---HHHHHHHh---cCCCEEEEEECcCCCCccchH-HHHHHHHHHcCCCEEEEEeeCCcC
Confidence             5899999999999865432   34444443   379999999999986544333 236677778899999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028251          156 VEEAFIKTAAKIL  168 (211)
Q Consensus       156 i~~~~~~i~~~~~  168 (211)
                      ++++|+.|.+.+.
T Consensus       154 i~el~~~i~~~~~  166 (258)
T 3a1s_A          154 LEELKEKIVEYAQ  166 (258)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999988653

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.92  E-value=8.3e-25  Score=160.97  Aligned_cols=157  Identities=16%  Similarity=0.209  Sum_probs=112.6

Q ss_pred             CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCC----------ccchhhc
Q 028251            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG----------QESFRSI   71 (211)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G----------~~~~~~~   71 (211)
                      +....++|+|+|++|+|||||+++|++..... ..++.+.+........+.   .+.+|||||          ++.+..+
T Consensus        19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~   94 (195)
T 3pqc_A           19 PPPLKGEVAFVGRSNVGKSSLLNALFNRKIAF-VSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRL   94 (195)
T ss_dssp             CCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSC-CCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHcCcccc-ccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHH
Confidence            34567899999999999999999999887433 333434444444333333   467999999          6667777


Q ss_pred             hHHHhccc---cEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCC--CCHHHHHHHHHH-cCC
Q 028251           72 TRSYYRGA---AGALLVYDITRRETF--NHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA--VSKEEGEQFAKE-NGL  143 (211)
Q Consensus        72 ~~~~~~~~---d~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~-~~~  143 (211)
                      +..++..+   |++++|+|+.+..+.  ..+..|+...      +.|+++|+||+|+.+...  ...++...++.. .++
T Consensus        95 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  168 (195)
T 3pqc_A           95 VEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEY  168 (195)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCS
T ss_pred             HHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCC
Confidence            77777766   899999999875332  2233333222      789999999999965332  223444555555 346


Q ss_pred             cEEEEeCCCCCCHHHHHHHHHHHHH
Q 028251          144 LFLEASARTAQNVEEAFIKTAAKIL  168 (211)
Q Consensus       144 ~~~~~s~~~~~~i~~~~~~i~~~~~  168 (211)
                      +++++||+++.|++++|++|.+.+.
T Consensus       169 ~~~~~Sa~~~~gv~~l~~~l~~~l~  193 (195)
T 3pqc_A          169 TIIPTSSVTGEGISELLDLISTLLK  193 (195)
T ss_dssp             CEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred             ceEEEecCCCCCHHHHHHHHHHHhh
Confidence            8999999999999999999998774

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.92  E-value=2.7e-25  Score=172.15  Aligned_cols=153  Identities=19%  Similarity=0.191  Sum_probs=115.2

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchh------hchHHHhc-
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR------SITRSYYR-   77 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~------~~~~~~~~-   77 (211)
                      +.++|+++|++|||||||+|+|++........+  |.+.......++. ...+.+|||||...+.      .+...++. 
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~p--g~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~   78 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWP--GVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS   78 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSS--CCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCC--CCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence            468999999999999999999998764443333  4444444455565 6678999999988765      34566665 


Q ss_pred             -cccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCH
Q 028251           78 -GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNV  156 (211)
Q Consensus        78 -~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  156 (211)
                       .+|++|+|+|+++.+..   ..|...+..   .+.|+++++||+|+....... .....++...+++++++||++|.|+
T Consensus        79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi  151 (272)
T 3b1v_A           79 QRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGV  151 (272)
T ss_dssp             TCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSH
T ss_pred             CCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCH
Confidence             69999999999886543   345444444   389999999999986433333 3456677778999999999999999


Q ss_pred             HHHHHHHHHHH
Q 028251          157 EEAFIKTAAKI  167 (211)
Q Consensus       157 ~~~~~~i~~~~  167 (211)
                      +++|+.|.+.+
T Consensus       152 ~el~~~i~~~~  162 (272)
T 3b1v_A          152 DQVVKKAAHTT  162 (272)
T ss_dssp             HHHHHHHHHSC
T ss_pred             HHHHHHHHHHH
Confidence            99999987754

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.92  E-value=2.3e-25  Score=171.25  Aligned_cols=151  Identities=17%  Similarity=0.121  Sum_probs=116.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh----------chHHHh
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS----------ITRSYY   76 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~----------~~~~~~   76 (211)
                      .+|+++|.+|||||||+|+|++........+.++.+.....+.+++.  .+.+|||||...+..          +...++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            48999999999999999999988765555566666777777777765  678999999876653          455666


Q ss_pred             --ccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCC
Q 028251           77 --RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQ  154 (211)
Q Consensus        77 --~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  154 (211)
                        ..+|++|+|+|+++.+....+..+   +.   ..+.|+++++||+|+....... .....+....+++++++||++|.
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~l~~~---l~---~~~~pvilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~  152 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLYLTSQ---LF---ELGKPVVVALNMMDIAEHRGIS-IDTEKLESLLGCSVIPIQAHKNI  152 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHHHHHH---HT---TSCSCEEEEEECHHHHHHTTCE-ECHHHHHHHHCSCEEECBGGGTB
T ss_pred             hhCCCCEEEEEeeCCCchhHHHHHHH---HH---HcCCCEEEEEEChhcCCcCCcH-HHHHHHHHHcCCCEEEEECCCCC
Confidence              899999999999987655443333   22   2389999999999985433222 22445666789999999999999


Q ss_pred             CHHHHHHHHHHH
Q 028251          155 NVEEAFIKTAAK  166 (211)
Q Consensus       155 ~i~~~~~~i~~~  166 (211)
                      |++++|+.|.+.
T Consensus       153 gi~el~~~i~~~  164 (256)
T 3iby_A          153 GIPALQQSLLHC  164 (256)
T ss_dssp             SHHHHHHHHHTC
T ss_pred             CHHHHHHHHHhh
Confidence            999999998765

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.92  E-value=7.5e-25  Score=164.89  Aligned_cols=165  Identities=15%  Similarity=0.110  Sum_probs=109.7

Q ss_pred             CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEEC-CEEEEEEEEeCCCc----------cchhhc
Q 028251            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID-GRPIKLQIWDTAGQ----------ESFRSI   71 (211)
Q Consensus         3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~l~D~~G~----------~~~~~~   71 (211)
                      ....++|+|+|.+|+|||||+|+|++...........+.+.......+. .....+.||||||.          +.+...
T Consensus        26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~  105 (223)
T 4dhe_A           26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL  105 (223)
T ss_dssp             CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence            3567899999999999999999999886322222222333333334443 33456889999994          344555


Q ss_pred             hHHHhcc---ccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCC--HHHHHHHHHH------
Q 028251           72 TRSYYRG---AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS--KEEGEQFAKE------  140 (211)
Q Consensus        72 ~~~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~------  140 (211)
                      ...++..   +|++|+|+|+.++.+.. ...|+..+..   .+.|+++|+||+|+.......  .+........      
T Consensus       106 ~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~  181 (223)
T 4dhe_A          106 LSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGY  181 (223)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhccc
Confidence            6666655   78899999998753322 2234444443   378999999999996533211  1122222222      


Q ss_pred             -cCCcEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 028251          141 -NGLLFLEASARTAQNVEEAFIKTAAKILQNI  171 (211)
Q Consensus       141 -~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~  171 (211)
                       .+.+++++||+++.|++++|++|.+.+....
T Consensus       182 ~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~  213 (223)
T 4dhe_A          182 AGKLTVQLFSALKRTGLDDAHALIESWLRPAA  213 (223)
T ss_dssp             CSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred             CCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence             4567999999999999999999998875543

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.91  E-value=1.2e-24  Score=168.99  Aligned_cols=154  Identities=17%  Similarity=0.152  Sum_probs=114.2

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh----------chHH
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS----------ITRS   74 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~----------~~~~   74 (211)
                      ..++|+++|.+|+|||||+|+|++..+.....+.++.+.....+...+.  .+.+|||||...+..          ....
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~e~i~~~   79 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDH--QVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSC--EEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCC--ceEEEECcCCCccccccccCCHHHHHHHH
Confidence            4689999999999999999999988765445555556665555655553  577899999877652          2333


Q ss_pred             Hh--ccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCC
Q 028251           75 YY--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASART  152 (211)
Q Consensus        75 ~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  152 (211)
                      ++  ..+|++|+|+|+++.+....+..+   +...   +.|+++|+||+|+.+..... .....+....+++++++||++
T Consensus        80 ~~~~~~~d~ii~VvD~~~~~~~~~~~~~---l~~~---~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~~  152 (274)
T 3i8s_A           80 YILSGDADLLINVVDASNLERNLYLTLQ---LLEL---GIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVSTR  152 (274)
T ss_dssp             HHHHTCCSEEEEEEEGGGHHHHHHHHHH---HHHH---TCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCGG
T ss_pred             HHhhcCCCEEEEEecCCChHHHHHHHHH---HHhc---CCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcCC
Confidence            33  799999999999986654444333   3332   79999999999985433221 224566677899999999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 028251          153 AQNVEEAFIKTAAKI  167 (211)
Q Consensus       153 ~~~i~~~~~~i~~~~  167 (211)
                      |.|++++++.|.+.+
T Consensus       153 g~gi~el~~~i~~~~  167 (274)
T 3i8s_A          153 GRGIEALKLAIDRYK  167 (274)
T ss_dssp             GHHHHHHHHHHHTCC
T ss_pred             CCCHHHHHHHHHHHH
Confidence            999999998887655

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.91  E-value=5.2e-24  Score=165.23  Aligned_cols=156  Identities=21%  Similarity=0.183  Sum_probs=118.6

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh------chHHHh--
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS------ITRSYY--   76 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~------~~~~~~--   76 (211)
                      +.++|+++|++|||||||+|+|++..+.....+..+.+.....+..++..  +.+||+||...+..      ....++  
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~DtpG~~~~~~~~~~~~~~~~~~~~   79 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKE--FLVVDLPGIYSLTAHSIDELIARNFILD   79 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEE--EEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCce--EEEEeCCCccccccCCHHHHHHHHhhhc
Confidence            35899999999999999999999887755555666677766666676654  78999999887665      455555  


Q ss_pred             ccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCH
Q 028251           77 RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNV  156 (211)
Q Consensus        77 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  156 (211)
                      ..+|++|+|+|+++.+.   ...|+..+....  ..|+++++||+|+.+...... ....+....+++++++|+++|.|+
T Consensus        80 ~~~d~vi~v~D~~~~~~---~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~~~~Sa~~g~gi  153 (271)
T 3k53_A           80 GNADVIVDIVDSTCLMR---NLFLTLELFEME--VKNIILVLNKFDLLKKKGAKI-DIKKMRKELGVPVIPTNAKKGEGV  153 (271)
T ss_dssp             TCCSEEEEEEEGGGHHH---HHHHHHHHHHTT--CCSEEEEEECHHHHHHHTCCC-CHHHHHHHHSSCEEECBGGGTBTH
T ss_pred             cCCcEEEEEecCCcchh---hHHHHHHHHhcC--CCCEEEEEEChhcCcccccHH-HHHHHHHHcCCcEEEEEeCCCCCH
Confidence            68999999999988632   233444444331  399999999999854322221 255667778999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028251          157 EEAFIKTAAKIL  168 (211)
Q Consensus       157 ~~~~~~i~~~~~  168 (211)
                      +++++.+.+.+.
T Consensus       154 ~~l~~~i~~~~~  165 (271)
T 3k53_A          154 EELKRMIALMAE  165 (271)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999988764

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.90  E-value=1.3e-24  Score=163.18  Aligned_cols=144  Identities=19%  Similarity=0.274  Sum_probs=105.4

Q ss_pred             CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCC---CCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhcc-
Q 028251            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV---HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG-   78 (211)
Q Consensus         3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~-   78 (211)
                      ....++|+++|++|+|||||+++|.+..+...   +.++.+.         +.....+.+||+||++.+...+..++.. 
T Consensus         9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   79 (218)
T 1nrj_B            9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA---------DYDGSGVTLVDFPGHVKLRYKLSDYLKTR   79 (218)
T ss_dssp             -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEET---------TGGGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEE---------EeeCceEEEEECCCcHHHHHHHHHHHHhc
Confidence            34679999999999999999999998876542   2233222         1134568899999999998888888877 


Q ss_pred             ---ccEEEEEEECC-CHHHHHHHHHHHHHHHHh----cCCCCeEEEEEecCCCCCCCCCC------HHHHHHHHHHcCCc
Q 028251           79 ---AAGALLVYDIT-RRETFNHLSSWLEDARQH----ANPNMSIMLVGNKCDLAHRRAVS------KEEGEQFAKENGLL  144 (211)
Q Consensus        79 ---~d~~i~v~d~~-~~~~~~~~~~~~~~~~~~----~~~~~p~ivv~nK~Dl~~~~~~~------~~~~~~~~~~~~~~  144 (211)
                         +|++|+|||++ ++.++.....|+..+...    ...+.|+++|+||+|+.......      .+++..++...+..
T Consensus        80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~  159 (218)
T 1nrj_B           80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKS  159 (218)
T ss_dssp             GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcc
Confidence               89999999999 888888888888777554    33589999999999997655433      34456666667788


Q ss_pred             EEEEeCCCCCC
Q 028251          145 FLEASARTAQN  155 (211)
Q Consensus       145 ~~~~s~~~~~~  155 (211)
                      ++++|++++.+
T Consensus       160 ~~~~Sa~~~~~  170 (218)
T 1nrj_B          160 LNEVERKINEE  170 (218)
T ss_dssp             HHC--------
T ss_pred             ccccccccccc
Confidence            99999998765

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.90  E-value=2.4e-23  Score=171.58  Aligned_cols=161  Identities=17%  Similarity=0.123  Sum_probs=115.0

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCc----------cchhhch
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ----------ESFRSIT   72 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~----------~~~~~~~   72 (211)
                      +..++|+++|.+|||||||+|+|++.... ....+.++.+.....+..++..  +.||||||+          +.+....
T Consensus       173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~e~~~~~~  250 (436)
T 2hjg_A          173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE--FVIVDTAGMRKKGKVYETTEKYSVLR  250 (436)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEE--EEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeE--EEEEECCCcCcCccccchHHHHHHHH
Confidence            35689999999999999999999988753 2333333455544556667654  789999997          4444433


Q ss_pred             H-HHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHH-HH----cCCcEE
Q 028251           73 R-SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFA-KE----NGLLFL  146 (211)
Q Consensus        73 ~-~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-~~----~~~~~~  146 (211)
                      . .+++.+|++|+|+|++++.+++.. .|...+..   .+.|+++++||+|+.+......++..+.. ..    .+++++
T Consensus       251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~  326 (436)
T 2hjg_A          251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL  326 (436)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEE
Confidence            3 478899999999999998776665 45555543   37999999999999765554434333222 22    367899


Q ss_pred             EEeCCCCCCHHHHHHHHHHHHHHH
Q 028251          147 EASARTAQNVEEAFIKTAAKILQN  170 (211)
Q Consensus       147 ~~s~~~~~~i~~~~~~i~~~~~~~  170 (211)
                      ++||++|.|++++|+.+.+.+...
T Consensus       327 ~~SA~tg~~v~~l~~~i~~~~~~~  350 (436)
T 2hjg_A          327 FMSALTKKRIHTLMPAIIKASENH  350 (436)
T ss_dssp             ECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             EEecccCCCHHHHHHHHHHHHHHh
Confidence            999999999999999998877653

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.89  E-value=2.2e-23  Score=163.78  Aligned_cols=156  Identities=19%  Similarity=0.149  Sum_probs=106.5

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCC-CCeeeEEEEEEEEECCEEEEEEEEeCCCccc--------hhhchHHH
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVEFGARMVTIDGRPIKLQIWDTAGQES--------FRSITRSY   75 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~--------~~~~~~~~   75 (211)
                      ...+|+|+|.+|+|||||+|+|++..+..... +.++..........+  ..++.||||||...        +......+
T Consensus         6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~--~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~   83 (301)
T 1wf3_A            6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMDQEVYEA   83 (301)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC--CcEEEEecCccccchhhHHHHHHHHHHHHH
Confidence            35679999999999999999999988764322 222222111122223  46788999999765        44556678


Q ss_pred             hccccEEEEEEECCCHHHHHHHHHHH-HHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCC
Q 028251           76 YRGAAGALLVYDITRRETFNHLSSWL-EDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQ  154 (211)
Q Consensus        76 ~~~~d~~i~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  154 (211)
                      ++.+|++++|+|++++.+..  ..|+ ..+.... .+.|+++|+||+|+........+....+  ....+++++||++|.
T Consensus        84 l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~--~~~~~~~~iSA~~g~  158 (301)
T 1wf3_A           84 LADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPEEAMKAYHEL--LPEAEPRMLSALDER  158 (301)
T ss_dssp             TSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHHHHHHHHHHT--STTSEEEECCTTCHH
T ss_pred             HhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchHHHHHHHHHh--cCcCcEEEEeCCCCC
Confidence            89999999999998864433  2343 3444332 4799999999999965322001222222  123468999999999


Q ss_pred             CHHHHHHHHHHHH
Q 028251          155 NVEEAFIKTAAKI  167 (211)
Q Consensus       155 ~i~~~~~~i~~~~  167 (211)
                      |++++++.|.+.+
T Consensus       159 gv~~l~~~l~~~l  171 (301)
T 1wf3_A          159 QVAELKADLLALM  171 (301)
T ss_dssp             HHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHhc
Confidence            9999999887654

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.89  E-value=2.1e-22  Score=161.88  Aligned_cols=163  Identities=18%  Similarity=0.158  Sum_probs=119.6

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchh---------hchHHH
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR---------SITRSY   75 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~---------~~~~~~   75 (211)
                      ..++|+++|++|+|||||+++|.+........+..+.......+..+  ...+.+|||||.....         .....+
T Consensus       166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~  243 (357)
T 2e87_A          166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILAL  243 (357)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHGG
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHHH
Confidence            56899999999999999999999876433222222333333333334  3568899999975421         112234


Q ss_pred             hccccEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCC
Q 028251           76 YRGAAGALLVYDITRRE--TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTA  153 (211)
Q Consensus        76 ~~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  153 (211)
                      ...+|++++|+|++++.  ++.....|+..+..... +.|+++|+||+|+.+...  .++...++...+.+++++||++|
T Consensus       244 ~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~iSA~~g  320 (357)
T 2e87_A          244 RYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEEN--IKRLEKFVKEKGLNPIKISALKG  320 (357)
T ss_dssp             GGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHH--HHHHHHHHHHTTCCCEECBTTTT
T ss_pred             HhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHH--HHHHHHHHHhcCCCeEEEeCCCC
Confidence            55799999999998876  56777788888776544 799999999999965332  24455666677889999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHh
Q 028251          154 QNVEEAFIKTAAKILQNIQ  172 (211)
Q Consensus       154 ~~i~~~~~~i~~~~~~~~~  172 (211)
                      .|+++++++|.+.+.....
T Consensus       321 ~gi~~l~~~i~~~l~~~~~  339 (357)
T 2e87_A          321 TGIDLVKEEIIKTLRPLAE  339 (357)
T ss_dssp             BTHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHh
Confidence            9999999999988865533

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.89  E-value=6.1e-23  Score=169.99  Aligned_cols=162  Identities=17%  Similarity=0.127  Sum_probs=118.3

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCC-CCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCC----------ccchhhch
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG----------QESFRSIT   72 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G----------~~~~~~~~   72 (211)
                      +..++|+++|.+|+|||||+|+|++... .....+.++.+.....+..++.  .+.||||||          ++.+....
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~  270 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR  270 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence            4578999999999999999999997653 2233333344444445566665  578999999          56666654


Q ss_pred             H-HHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHc-----CCcEE
Q 028251           73 R-SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN-----GLLFL  146 (211)
Q Consensus        73 ~-~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~  146 (211)
                      . .++..+|++|+|+|+++..+. ....|+..+..   .+.|+++|+||+|+.+......++..+.+...     +++++
T Consensus       271 ~~~~~~~ad~~llviD~~~~~~~-~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (456)
T 4dcu_A          271 ALKAIDRSEVVAVVLDGEEGIIE-QDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL  346 (456)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCH-HHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHHhhCCEEEEEEeCCCCcCH-HHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEE
Confidence            4 478899999999999885432 22344444443   37999999999999876666667776666654     57899


Q ss_pred             EEeCCCCCCHHHHHHHHHHHHHHHH
Q 028251          147 EASARTAQNVEEAFIKTAAKILQNI  171 (211)
Q Consensus       147 ~~s~~~~~~i~~~~~~i~~~~~~~~  171 (211)
                      ++||++|.|++++|+.+.+.+....
T Consensus       347 ~~SA~~g~gv~~l~~~i~~~~~~~~  371 (456)
T 4dcu_A          347 FMSALTKKRIHTLMPAIIKASENHS  371 (456)
T ss_dssp             ECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred             EEcCCCCcCHHHHHHHHHHHHHHhc
Confidence            9999999999999999998775543

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.89  E-value=5.8e-23  Score=170.14  Aligned_cols=157  Identities=18%  Similarity=0.126  Sum_probs=98.1

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhch--------HHH
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSIT--------RSY   75 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~--------~~~   75 (211)
                      ..++|+|+|++|+|||||+|+|++.... ....+.++.+.....+.+++.  .+.+|||||...+...+        ..+
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~--~l~liDT~G~~~~~~~ve~~gi~~~~~~  309 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKT--MFRLTDTAGLREAGEEIEHEGIRRSRMK  309 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTE--EEEEEC--------------------CC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCe--EEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence            3578999999999999999999987532 333344455555566677764  58899999987765443        336


Q ss_pred             hccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCC
Q 028251           76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQN  155 (211)
Q Consensus        76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  155 (211)
                      +..+|++|+|+|++++.++..+..+...+....  +.|+++|+||+|+......   ..+.+......+++++||++|.|
T Consensus       310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~---~~~~l~~~~~~~~i~vSAktg~G  384 (476)
T 3gee_A          310 MAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADA---LIRAIADGTGTEVIGISALNGDG  384 (476)
T ss_dssp             CSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHH---HHHHHHHHHTSCEEECBTTTTBS
T ss_pred             cccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccch---hHHHHHhcCCCceEEEEECCCCC
Confidence            789999999999999877654333333333332  7999999999999764432   12333333246899999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028251          156 VEEAFIKTAAKIL  168 (211)
Q Consensus       156 i~~~~~~i~~~~~  168 (211)
                      +++++++|.+.+.
T Consensus       385 I~eL~~~i~~~~~  397 (476)
T 3gee_A          385 IDTLKQHMGDLVK  397 (476)
T ss_dssp             HHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988775

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.89  E-value=1.8e-22  Score=166.40  Aligned_cols=151  Identities=22%  Similarity=0.268  Sum_probs=102.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc---------hhhchHHHh
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES---------FRSITRSYY   76 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~---------~~~~~~~~~   76 (211)
                      .+|+++|.+|||||||+|+|++.... ....+.++.+.....+.+++..  +.+|||||.+.         +...+..++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKT--FKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEE--EEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeE--EEEEECCCccccccchHHHHHHHHHHHHH
Confidence            58999999999999999999987753 2333344444445556667654  67999999764         234567789


Q ss_pred             ccccEEEEEEECCCHHHHHH--HHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHH-HHHHHHcCC-cEEEEeCCC
Q 028251           77 RGAAGALLVYDITRRETFNH--LSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEG-EQFAKENGL-LFLEASART  152 (211)
Q Consensus        77 ~~~d~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~-~~~~~~~~~-~~~~~s~~~  152 (211)
                      +.+|++|+|+|+.++.+...  +..|+.   .   .++|+++|+||+|+...  . ..+. ..+. ..++ +++++||++
T Consensus        80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~---~---~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~  149 (439)
T 1mky_A           80 READLVLFVVDGKRGITKEDESLADFLR---K---STVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEH  149 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHHHHHHHHHHH---H---HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTT
T ss_pred             HhCCEEEEEEECCCCCCHHHHHHHHHHH---H---cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccC
Confidence            99999999999987544322  223322   2   27899999999998431  0 1222 3333 4565 689999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 028251          153 AQNVEEAFIKTAAKILQ  169 (211)
Q Consensus       153 ~~~i~~~~~~i~~~~~~  169 (211)
                      |.|+.++++.|.+.+.+
T Consensus       150 g~gv~~L~~~i~~~l~~  166 (439)
T 1mky_A          150 NINLDTMLETIIKKLEE  166 (439)
T ss_dssp             TBSHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhccc
Confidence            99999999999888754

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.88  E-value=6.4e-23  Score=163.36  Aligned_cols=157  Identities=18%  Similarity=0.183  Sum_probs=116.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc----hhhchHHHhc---cc
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES----FRSITRSYYR---GA   79 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~----~~~~~~~~~~---~~   79 (211)
                      .+|+|+|.++||||||+++|+.........+..+.......+.+++ ...+.+||+||...    +..+...+++   .+
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~  237 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT  237 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence            4789999999999999999997764322223223333333445554 24688999999543    3334455554   49


Q ss_pred             cEEEEEEECCC---HHHHHHHHHHHHHHHHhcC--CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC--CcEEEEeCCC
Q 028251           80 AGALLVYDITR---RETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG--LLFLEASART  152 (211)
Q Consensus        80 d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~  152 (211)
                      |++|+|+|+++   +.++..+..|+..+..+..  .+.|+++|+||+|+....    +..+.+.....  .+++++||++
T Consensus       238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA~t  313 (342)
T 1lnz_A          238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVT  313 (342)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCC
T ss_pred             cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEECCC
Confidence            99999999998   7788888889888887652  489999999999986422    34555666655  6899999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 028251          153 AQNVEEAFIKTAAKIL  168 (211)
Q Consensus       153 ~~~i~~~~~~i~~~~~  168 (211)
                      +.|+++++++|.+.+.
T Consensus       314 g~gi~eL~~~l~~~l~  329 (342)
T 1lnz_A          314 REGLRELLFEVANQLE  329 (342)
T ss_dssp             SSTTHHHHHHHHHHHT
T ss_pred             CcCHHHHHHHHHHHHh
Confidence            9999999999988874

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.87  E-value=2.3e-23  Score=170.02  Aligned_cols=158  Identities=14%  Similarity=0.139  Sum_probs=114.4

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhc-------hHHH
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI-------TRSY   75 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~-------~~~~   75 (211)
                      ...++|+|+|+.++|||||+++|++..+.. ...+..+.+.....+.+.+.. .+.+|||||++.+..+       ...+
T Consensus        32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~~~~~  110 (423)
T 3qq5_A           32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEKARRV  110 (423)
T ss_dssp             CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHHHHHH
Confidence            467899999999999999999999887632 223333444445555555432 6889999998876554       4567


Q ss_pred             hccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCC
Q 028251           76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQN  155 (211)
Q Consensus        76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  155 (211)
                      +..+|++|+|+|+...   .....|+..+...   +.|+++|+||+|+......  +..+.+....+++++++||++|.|
T Consensus       111 l~~aD~vllVvD~~~~---~~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg~g  182 (423)
T 3qq5_A          111 FYRADCGILVTDSAPT---PYEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQKKG  182 (423)
T ss_dssp             HTSCSEEEEECSSSCC---HHHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCTTS
T ss_pred             HhcCCEEEEEEeCCCh---HHHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCCCC
Confidence            8899999999999433   2345566666554   7999999999999765543  556666666788999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 028251          156 VEEAFIKTAAKILQN  170 (211)
Q Consensus       156 i~~~~~~i~~~~~~~  170 (211)
                      ++++|+.|.+.+.+.
T Consensus       183 I~eL~~~L~~~l~~~  197 (423)
T 3qq5_A          183 FDDIGKTISEILPGD  197 (423)
T ss_dssp             TTTHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHhhhhh
Confidence            999999999887433

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.87  E-value=2.4e-21  Score=158.09  Aligned_cols=163  Identities=15%  Similarity=0.121  Sum_probs=114.6

Q ss_pred             CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEE-------EE---------EE---CCEEEEEEEEeC
Q 028251            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGAR-------MV---------TI---DGRPIKLQIWDT   62 (211)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~-------~~---------~~---~~~~~~l~l~D~   62 (211)
                      .....++|+++|++++|||||+++|++.......... ..+....       .+         ..   ......+.+|||
T Consensus         4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt   82 (403)
T 3sjy_A            4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYA-ETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA   82 (403)
T ss_dssp             CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEE-EEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCcc-ccceeeccccccccceecccccccccccccccccceEEEEEC
Confidence            4567799999999999999999999975433311100 1110000       00         00   122367899999


Q ss_pred             CCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC--CHHHHHHHHHH
Q 028251           63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--SKEEGEQFAKE  140 (211)
Q Consensus        63 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~  140 (211)
                      ||++.+.......+..+|++|+|+|++++.++.+...++..+....  ..|+++++||+|+.+....  ..++..++...
T Consensus        83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~  160 (403)
T 3sjy_A           83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG  160 (403)
T ss_dssp             CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred             CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999998765666677766665543  3589999999999653221  11222222222


Q ss_pred             ---cCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 028251          141 ---NGLLFLEASARTAQNVEEAFIKTAAKI  167 (211)
Q Consensus       141 ---~~~~~~~~s~~~~~~i~~~~~~i~~~~  167 (211)
                         .+++++++||++|.|++++++.|.+.+
T Consensus       161 ~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l  190 (403)
T 3sjy_A          161 TWAENVPIIPVSALHKINIDSLIEGIEEYI  190 (403)
T ss_dssp             STTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             hCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence               256899999999999999999888765

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.87  E-value=1.3e-21  Score=148.90  Aligned_cols=162  Identities=14%  Similarity=0.116  Sum_probs=105.0

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCC--CeeeEEEEEEEEECCEEEEEEEEeCCCcc-----------chhh
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL--TIGVEFGARMVTIDGRPIKLQIWDTAGQE-----------SFRS   70 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~l~D~~G~~-----------~~~~   70 (211)
                      +..++|+|+|++|+|||||+|+|++..+.....+  +.+.........+++.  .+.||||||..           .+..
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~~~  104 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKET--ELVVVDTPGIFDTEVPNAETSKEIIR  104 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTE--EEEEEECCSCC-----CHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCc--eEEEEECCCccCCCCCHHHHHHHHHH
Confidence            4679999999999999999999999887665544  3344444444555654  57899999943           3334


Q ss_pred             chHHHhccccEEEEEEECCCHHH--HHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCC------HHHHHHHHHHcC
Q 028251           71 ITRSYYRGAAGALLVYDITRRET--FNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS------KEEGEQFAKENG  142 (211)
Q Consensus        71 ~~~~~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~------~~~~~~~~~~~~  142 (211)
                      .....++.+|++|+|+|+++...  ...+..+...+...  ...|+++|+||+|+.....+.      .+....+....+
T Consensus       105 ~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~  182 (239)
T 3lxx_A          105 CILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFG  182 (239)
T ss_dssp             HHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHHHHS
T ss_pred             HHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcC
Confidence            44555677899999999875322  22222222222221  246999999999986543322      135677777888


Q ss_pred             CcEEEEeCCCC-----CCHHHHHHHHHHHHHH
Q 028251          143 LLFLEASARTA-----QNVEEAFIKTAAKILQ  169 (211)
Q Consensus       143 ~~~~~~s~~~~-----~~i~~~~~~i~~~~~~  169 (211)
                      ..++.++...+     .++.++++.+.+.+.+
T Consensus       183 ~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~  214 (239)
T 3lxx_A          183 DRYCALNNKATGAEQEAQRAQLLGLIQRVVRE  214 (239)
T ss_dssp             SSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence            88888877643     5788888877776644

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.87  E-value=8e-22  Score=163.49  Aligned_cols=154  Identities=21%  Similarity=0.174  Sum_probs=115.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcc-chhh--------chHHH
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE-SFRS--------ITRSY   75 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~-~~~~--------~~~~~   75 (211)
                      .++|+|+|.+|+|||||+|+|++.... ....+.++.+.....+.+++.  .+.+|||||.. .+..        ....+
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~--~~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGI--LFRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTE--EEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCe--EEEEEECCCccccchhhHHHHHHHHHHHH
Confidence            389999999999999999999987642 333444455565666777764  47899999987 5432        24567


Q ss_pred             hccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCC
Q 028251           76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQN  155 (211)
Q Consensus        76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  155 (211)
                      +..+|++|+|+|++++.++.... ++..+     .+.|+++|+||+|+.+.  ...++...++. .+.+++++||+++.|
T Consensus       321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~G  391 (482)
T 1xzp_A          321 IEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKLG-TDRHMVKISALKGEG  391 (482)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTCC
T ss_pred             hhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHhc-CCCcEEEEECCCCCC
Confidence            88999999999999877665532 22322     27899999999999653  34455544432 346899999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 028251          156 VEEAFIKTAAKILQN  170 (211)
Q Consensus       156 i~~~~~~i~~~~~~~  170 (211)
                      +++++++|.+.+...
T Consensus       392 i~eL~~~l~~~~~~~  406 (482)
T 1xzp_A          392 LEKLEESIYRETQEI  406 (482)
T ss_dssp             HHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHhhh
Confidence            999999999987643

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.87  E-value=2.6e-21  Score=163.64  Aligned_cols=162  Identities=22%  Similarity=0.275  Sum_probs=115.1

Q ss_pred             CCCCceeeEEEEcCCCCCHHHHHHHHHhCC--CCCC-----C------CCCeeeEEEEE--EEEE---CCEEEEEEEEeC
Q 028251            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKR--FQPV-----H------DLTIGVEFGAR--MVTI---DGRPIKLQIWDT   62 (211)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~~--~~~~-----~------~~~~~~~~~~~--~~~~---~~~~~~l~l~D~   62 (211)
                      |+.++..+|+++|+.++|||||+++|+...  +...     .      ....|.++...  .+.+   ++..+.++||||
T Consensus         1 ~~~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDT   80 (600)
T 2ywe_A            1 MEQKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDT   80 (600)
T ss_dssp             CCGGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECC
T ss_pred             CCccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEEC
Confidence            666788999999999999999999998531  1110     0      00112222211  1112   455688999999


Q ss_pred             CCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC
Q 028251           63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG  142 (211)
Q Consensus        63 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~  142 (211)
                      ||+..|.......+..+|++|+|+|+++..+.+....|.....    .+.|+++++||+|+....  ..+...++....+
T Consensus        81 PGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg  154 (600)
T 2ywe_A           81 PGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLG  154 (600)
T ss_dssp             CCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSC
T ss_pred             CCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhC
Confidence            9999999999999999999999999999877666666655443    389999999999996533  2233445555556


Q ss_pred             C---cEEEEeCCCCCCHHHHHHHHHHHHH
Q 028251          143 L---LFLEASARTAQNVEEAFIKTAAKIL  168 (211)
Q Consensus       143 ~---~~~~~s~~~~~~i~~~~~~i~~~~~  168 (211)
                      +   +++++||++|.|++++++.|.+.+.
T Consensus       155 ~~~~~vi~vSAktg~GI~~Lle~I~~~lp  183 (600)
T 2ywe_A          155 LDPEEAILASAKEGIGIEEILEAIVNRIP  183 (600)
T ss_dssp             CCGGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             CCcccEEEEEeecCCCchHHHHHHHHhcc
Confidence            5   4899999999999999998887663

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.87  E-value=5.5e-21  Score=156.23  Aligned_cols=161  Identities=19%  Similarity=0.173  Sum_probs=104.3

Q ss_pred             CCCCceeeEEEEcCCCCCHHHHHHHHHhCCC---CCCCCC--CeeeEEEEEEEEE-------------C--C----EEEE
Q 028251            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRF---QPVHDL--TIGVEFGARMVTI-------------D--G----RPIK   56 (211)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~~~---~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~   56 (211)
                      |+....++|+++|+.++|||||+++|.+...   ..+..+  |....+....+..             +  +    ....
T Consensus         3 ~~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~   82 (408)
T 1s0u_A            3 LGSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRR   82 (408)
T ss_dssp             --CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEE
T ss_pred             cccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccE
Confidence            4456679999999999999999999985432   222222  3333333222211             1  1    1367


Q ss_pred             EEEEeCCCccchhhchHHHhccccEEEEEEECCC----HHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCC--CC
Q 028251           57 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITR----RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA--VS  130 (211)
Q Consensus        57 l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~  130 (211)
                      +.||||||++.+.......+..+|++|+|+|+++    +.+.+.+..    +....  ..|+++++||+|+.+...  ..
T Consensus        83 i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~l~--~~~iivv~NK~Dl~~~~~~~~~  156 (408)
T 1s0u_A           83 VSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMA----LEILG--IDKIIIVQNKIDLVDEKQAEEN  156 (408)
T ss_dssp             EEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHH----HHHTT--CCCEEEEEECTTSSCTTTTTTH
T ss_pred             EEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHH----HHHcC--CCeEEEEEEccCCCCHHHHHHH
Confidence            9999999999988877777888999999999985    344443332    22221  358999999999976443  23


Q ss_pred             HHHHHHHHHH---cCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 028251          131 KEEGEQFAKE---NGLLFLEASARTAQNVEEAFIKTAAKI  167 (211)
Q Consensus       131 ~~~~~~~~~~---~~~~~~~~s~~~~~~i~~~~~~i~~~~  167 (211)
                      .+++.+++..   .+++++++||++|.|++++++.|.+.+
T Consensus       157 ~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i  196 (408)
T 1s0u_A          157 YEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFI  196 (408)
T ss_dssp             HHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred             HHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence            4555666554   367899999999999999999888755

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.87  E-value=2.6e-22  Score=160.44  Aligned_cols=118  Identities=18%  Similarity=0.260  Sum_probs=98.3

Q ss_pred             EEEEEEEeCCCccchhhchHHHhccccEEEEEEECCC----------HHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCC
Q 028251           54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLSSWLEDARQHA-NPNMSIMLVGNKCD  122 (211)
Q Consensus        54 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D  122 (211)
                      .+.+.+||++|++.++..|..+++.++++|+|||+++          ..++.....|+..+.... ..+.|+++++||+|
T Consensus       192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~D  271 (353)
T 1cip_A          192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD  271 (353)
T ss_dssp             TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred             CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcC
Confidence            5778999999999999999999999999999999999          456888888888776532 25799999999999


Q ss_pred             CCCCC---------------CCCHHHHHHHHH-----------HcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 028251          123 LAHRR---------------AVSKEEGEQFAK-----------ENGLLFLEASARTAQNVEEAFIKTAAKILQNI  171 (211)
Q Consensus       123 l~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~  171 (211)
                      +.+.+               ....+++..++.           ..++.++++||+++.||+++|+++.+.+.+..
T Consensus       272 L~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~  346 (353)
T 1cip_A          272 LFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN  346 (353)
T ss_dssp             HHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             chhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHHH
Confidence            85321               356778888776           24567999999999999999999999887643

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.86  E-value=2.6e-21  Score=163.96  Aligned_cols=159  Identities=23%  Similarity=0.265  Sum_probs=110.5

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCC--CC-----C------CCCCeeeEEEEEEEEE-----CCEEEEEEEEeCCCc
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRF--QP-----V------HDLTIGVEFGARMVTI-----DGRPIKLQIWDTAGQ   65 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~--~~-----~------~~~~~~~~~~~~~~~~-----~~~~~~l~l~D~~G~   65 (211)
                      ++..+|+|+|+.++|||||+++|+....  ..     .      .....|.++......+     ++..+.++||||||+
T Consensus         2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh   81 (599)
T 3cb4_D            2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGH   81 (599)
T ss_dssp             TTEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCc
Confidence            3568999999999999999999986321  10     0      0112234443333333     455688999999999


Q ss_pred             cchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC--
Q 028251           66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL--  143 (211)
Q Consensus        66 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--  143 (211)
                      ..+...+..++..+|++|+|+|+++....+....|.....    .+.|+++++||+|+.+..  ..+...++....+.  
T Consensus        82 ~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~  155 (599)
T 3cb4_D           82 VDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDA  155 (599)
T ss_dssp             GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCC
T ss_pred             hHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCc
Confidence            9999999999999999999999998766666666655443    378999999999997533  22334555555665  


Q ss_pred             -cEEEEeCCCCCCHHHHHHHHHHHHH
Q 028251          144 -LFLEASARTAQNVEEAFIKTAAKIL  168 (211)
Q Consensus       144 -~~~~~s~~~~~~i~~~~~~i~~~~~  168 (211)
                       .++++||++|.|++++++.|.+.+.
T Consensus       156 ~~vi~vSAktg~GI~~Ll~~I~~~lp  181 (599)
T 3cb4_D          156 TDAVRCSAKTGVGVQDVLERLVRDIP  181 (599)
T ss_dssp             TTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred             ceEEEeecccCCCchhHHHHHhhcCC
Confidence             4999999999999999988887653

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.86  E-value=1.2e-22  Score=167.40  Aligned_cols=153  Identities=18%  Similarity=0.127  Sum_probs=99.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcc--------chhhchHHHhc
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE--------SFRSITRSYYR   77 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~--------~~~~~~~~~~~   77 (211)
                      .++|+++|.+|||||||+|+|++...... ..+.|.+.......+......+.+|||||.+        .+...+..++.
T Consensus         3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   81 (436)
T 2hjg_A            3 KPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD   81 (436)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            36899999999999999999998776432 2233555444444454445578999999985        56667788899


Q ss_pred             cccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEeCCCCCCH
Q 028251           78 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNV  156 (211)
Q Consensus        78 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i  156 (211)
                      .+|++|+|+|+.++.+...  .++..+.+  ..+.|+++++||+|+......    ...+. ..++ .++++||++|.|+
T Consensus        82 ~ad~il~vvD~~~~~~~~d--~~~~~~l~--~~~~pvilv~NK~D~~~~~~~----~~~~~-~lg~~~~~~iSA~~g~gv  152 (436)
T 2hjg_A           82 EADVIIFMVNGREGVTAAD--EEVAKILY--RTKKPVVLAVNKLDNTEMRAN----IYDFY-SLGFGEPYPISGTHGLGL  152 (436)
T ss_dssp             HCSEEEEEEETTTCSCHHH--HHHHHHHT--TCCSCEEEEEECCCC-----C----CCSSG-GGSSCCCEECBTTTTBTH
T ss_pred             hCCEEEEEEeCCCCCCHHH--HHHHHHHH--HcCCCEEEEEECccCccchhh----HHHHH-HcCCCCeEEEeCcCCCCh
Confidence            9999999999988655433  33333222  248899999999998643211    11122 2454 6899999999999


Q ss_pred             HHHHHHHHHHHH
Q 028251          157 EEAFIKTAAKIL  168 (211)
Q Consensus       157 ~~~~~~i~~~~~  168 (211)
                      .++++.+.+.+.
T Consensus       153 ~~L~~~i~~~l~  164 (436)
T 2hjg_A          153 GDLLDAVAEHFK  164 (436)
T ss_dssp             HHHHHHHHHTGG
T ss_pred             HHHHHHHHHhcC
Confidence            999999887764

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.86  E-value=1.1e-20  Score=151.74  Aligned_cols=160  Identities=24%  Similarity=0.139  Sum_probs=108.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc---------hhhchHHHhcc
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES---------FRSITRSYYRG   78 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~---------~~~~~~~~~~~   78 (211)
                      .|+++|++|+|||||+|+|.+........+..+.+.....+.+++.  .+.+|||+|...         +... ...+..
T Consensus       181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~--~v~l~DT~G~i~~lp~~lve~f~~t-l~~~~~  257 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR--KIMLVDTVGFIRGIPPQIVDAFFVT-LSEAKY  257 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTE--EEEEEECCCBCSSCCGGGHHHHHHH-HHGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCE--EEEEEeCCCchhcCCHHHHHHHHHH-HHHHHh
Confidence            3999999999999999999988764433333344455566777774  568999999622         2222 235788


Q ss_pred             ccEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC-CHHHHHHHHHHc---CCcEEEEeCCC
Q 028251           79 AAGALLVYDITRRE--TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV-SKEEGEQFAKEN---GLLFLEASART  152 (211)
Q Consensus        79 ~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~---~~~~~~~s~~~  152 (211)
                      +|++++|+|++++.  ....+..|...+......+.|+++|.||+|+...... ..+.+..++...   +.+++++|+++
T Consensus       258 aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~  337 (364)
T 2qtf_A          258 SDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALK  337 (364)
T ss_dssp             SSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTT
T ss_pred             CCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCC
Confidence            99999999999876  5566666666666554457899999999998653210 011232333444   33689999999


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q 028251          153 AQNVEEAFIKTAAKILQN  170 (211)
Q Consensus       153 ~~~i~~~~~~i~~~~~~~  170 (211)
                      +.|++++++.|.+.+...
T Consensus       338 g~gi~~L~~~I~~~l~~~  355 (364)
T 2qtf_A          338 RTNLELLRDKIYQLATQL  355 (364)
T ss_dssp             TBSHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHhccc
Confidence            999999999998876543

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.86  E-value=4.7e-21  Score=159.37  Aligned_cols=155  Identities=18%  Similarity=0.160  Sum_probs=109.0

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCC-------CCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhc
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKR-------FQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYR   77 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~   77 (211)
                      ..++|+++|+.++|||||+++|++..       +.....+..+.+.....+.+++  ..+.+|||||++.+.......+.
T Consensus        18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~~   95 (482)
T 1wb1_A           18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAAD   95 (482)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHHh
Confidence            57899999999999999999999776       1222222223333223344444  56889999999999998999999


Q ss_pred             cccEEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCC--CCHHHHHHHHHHc----CCcEEEE
Q 028251           78 GAAGALLVYDITR---RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA--VSKEEGEQFAKEN----GLLFLEA  148 (211)
Q Consensus        78 ~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~----~~~~~~~  148 (211)
                      .+|++|+|+|+++   +.+.+.+.    .+..   .+.|+++++||+|+.+...  ...++...++...    +.+++++
T Consensus        96 ~aD~~ilVvda~~g~~~qt~e~l~----~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~v  168 (482)
T 1wb1_A           96 IIDLALIVVDAKEGPKTQTGEHML----ILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPI  168 (482)
T ss_dssp             SCCEEEEEEETTTCSCHHHHHHHH----HHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEEC
T ss_pred             hCCEEEEEEecCCCccHHHHHHHH----HHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEE
Confidence            9999999999988   44433332    2222   2788899999999965221  1123344555544    5689999


Q ss_pred             eCCCCCCHHHHHHHHHHHHH
Q 028251          149 SARTAQNVEEAFIKTAAKIL  168 (211)
Q Consensus       149 s~~~~~~i~~~~~~i~~~~~  168 (211)
                      ||++|.|++++++.|.+.+.
T Consensus       169 SA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          169 SAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             CTTTCTTHHHHHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHHHhhc
Confidence            99999999999999988775

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.86  E-value=6.5e-22  Score=153.62  Aligned_cols=160  Identities=16%  Similarity=0.225  Sum_probs=92.1

Q ss_pred             CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCC--------CCCeeeEEEEEEEEECCEEEEEEEEeCCCccc-------
Q 028251            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH--------DLTIGVEFGARMVTIDGRPIKLQIWDTAGQES-------   67 (211)
Q Consensus         3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~-------   67 (211)
                      ....++|+|+|.+|+|||||+|+|++.......        .++.+.+.....+..++..+.+.+|||||...       
T Consensus         5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~   84 (274)
T 3t5d_A            5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC   84 (274)
T ss_dssp             --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred             CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence            346799999999999999999999876654432        34555555555555566667899999999732       


Q ss_pred             hhhch-------HHHhcc-------------ccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCC
Q 028251           68 FRSIT-------RSYYRG-------------AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR  127 (211)
Q Consensus        68 ~~~~~-------~~~~~~-------------~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  127 (211)
                      +..+.       ..++..             +|+++++++.........-..++..+..    +.|+++|+||+|+....
T Consensus        85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~  160 (274)
T 3t5d_A           85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPE  160 (274)
T ss_dssp             THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHH
Confidence            22222       334433             7789999977652211111233333332    79999999999985432


Q ss_pred             CCC--HHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHH
Q 028251          128 AVS--KEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK  166 (211)
Q Consensus       128 ~~~--~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~  166 (211)
                      +..  .+.+.+.....+++++.+|+.++.+++++++.|.+.
T Consensus       161 e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~  201 (274)
T 3t5d_A          161 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR  201 (274)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHT
T ss_pred             HHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcC
Confidence            211  123444555678899999999999999988777654

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.85  E-value=8.2e-22  Score=155.47  Aligned_cols=118  Identities=16%  Similarity=0.197  Sum_probs=96.0

Q ss_pred             EEEEEEEeCCCccchhhchHHHhccccEEEEEEECC----------CHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCC
Q 028251           54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT----------RRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCD  122 (211)
Q Consensus        54 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D  122 (211)
                      .+.+.+||++|++.++..|..+++.++++|+|||++          +..++.....|+..+..... .+.|+++++||+|
T Consensus       166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~D  245 (327)
T 3ohm_A          166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD  245 (327)
T ss_dssp             TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHH
T ss_pred             ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECch
Confidence            477899999999999999999999999999999665          55667777777777654332 5899999999999


Q ss_pred             CCCCC----------------CCCHHHHHHHHH----------HcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 028251          123 LAHRR----------------AVSKEEGEQFAK----------ENGLLFLEASARTAQNVEEAFIKTAAKILQNI  171 (211)
Q Consensus       123 l~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~  171 (211)
                      +.+.+                ....+++..++.          ..++.++++||+++.||+.+|+.+.+.+++..
T Consensus       246 L~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~  320 (327)
T 3ohm_A          246 LLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  320 (327)
T ss_dssp             HHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHHh
Confidence            85432                456777877743          34567899999999999999999999998754

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.85  E-value=2.7e-21  Score=148.99  Aligned_cols=162  Identities=15%  Similarity=0.106  Sum_probs=104.2

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCC-eeeEEEEEEEEECCEEEEEEEEeCCCccchhh-----------c
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLT-IGVEFGARMVTIDGRPIKLQIWDTAGQESFRS-----------I   71 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~-----------~   71 (211)
                      ..++|+|+|++|+|||||+++|++..... ...+. ++..........++  ..+.||||||...+..           .
T Consensus        21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~~   98 (260)
T 2xtp_A           21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQRC   98 (260)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence            56899999999999999999999887433 33332 34444444455555  4588999999765432           2


Q ss_pred             hHHHhccccEEEEEEECCCHHH-HHHHHHHHHHHHHhcCCCCeEEEEEe-cCCCCCCCCCCH-------HHHHHHHHHcC
Q 028251           72 TRSYYRGAAGALLVYDITRRET-FNHLSSWLEDARQHANPNMSIMLVGN-KCDLAHRRAVSK-------EEGEQFAKENG  142 (211)
Q Consensus        72 ~~~~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~n-K~Dl~~~~~~~~-------~~~~~~~~~~~  142 (211)
                      ...+++.+|++|+|+|+++... ...+..++..+.... ...|.++++| |+|+... ....       +++..+....+
T Consensus        99 ~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~  176 (260)
T 2xtp_A           99 YLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAACG  176 (260)
T ss_dssp             HHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHTT
T ss_pred             HHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHhC
Confidence            2336788999999999986221 122222333221111 1356666666 9999743 1111       22334555554


Q ss_pred             Cc---E--EEEeCCCCCCHHHHHHHHHHHHHHH
Q 028251          143 LL---F--LEASARTAQNVEEAFIKTAAKILQN  170 (211)
Q Consensus       143 ~~---~--~~~s~~~~~~i~~~~~~i~~~~~~~  170 (211)
                      ..   +  +++||+++.|++++|+.|.+.+...
T Consensus       177 ~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~  209 (260)
T 2xtp_A          177 GRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK  209 (260)
T ss_dssp             TCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence            33   2  7899999999999999999888653

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.85  E-value=3.9e-20  Score=152.50  Aligned_cols=160  Identities=21%  Similarity=0.112  Sum_probs=106.8

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhc------------
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI------------   71 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~------------   71 (211)
                      ..++|+|+|++|||||||+|+|++.... ....+.++.+.....+.+++..  +.+|||||.......            
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~--~~l~Dt~G~~~~~~~~~~~~e~~~~~~  256 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK--YVFVDTAGLRRKSRVEPRTVEKYSNYR  256 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE--EEESSCSCC-----------CCSCCHH
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE--EEEEECCCCccccccchhhHHHHHHHH
Confidence            4689999999999999999999987642 2222333444444556777764  679999997433221            


Q ss_pred             hHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHH-H----HcCCcEE
Q 028251           72 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFA-K----ENGLLFL  146 (211)
Q Consensus        72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-~----~~~~~~~  146 (211)
                      ...++..+|++++|+|+.+..+.... .+...+..   .+.|+++++||+|+.+......++..... .    ..+.+++
T Consensus       257 ~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (439)
T 1mky_A          257 VVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLI  332 (439)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEE
Confidence            13467789999999999876554432 22222222   37999999999999765443444333222 2    2357899


Q ss_pred             EEeCCCCCCHHHHHHHHHHHHHHH
Q 028251          147 EASARTAQNVEEAFIKTAAKILQN  170 (211)
Q Consensus       147 ~~s~~~~~~i~~~~~~i~~~~~~~  170 (211)
                      ++||++|.|++++|+.+.+.+.+.
T Consensus       333 ~~SA~~g~gv~~l~~~i~~~~~~~  356 (439)
T 1mky_A          333 FTSADKGWNIDRMIDAMNLAYASY  356 (439)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHHHhh
Confidence            999999999999999998776543

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.85  E-value=8.3e-21  Score=155.27  Aligned_cols=159  Identities=18%  Similarity=0.182  Sum_probs=109.3

Q ss_pred             CCceeeEEEEcCCCCCHHHHHHHHHhCCC---CCCCCC--CeeeEEEEEEEEE-------------C--C----EEEEEE
Q 028251            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRF---QPVHDL--TIGVEFGARMVTI-------------D--G----RPIKLQ   58 (211)
Q Consensus         3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~---~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~l~   58 (211)
                      ....++|+++|+.++|||||+++|++...   ..+..+  +....+....+..             +  +    ....+.
T Consensus         7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   86 (410)
T 1kk1_A            7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   86 (410)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence            45678999999999999999999995432   222222  3333333222211             1  1    136799


Q ss_pred             EEeCCCccchhhchHHHhccccEEEEEEECCCH----HHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCC--CCHH
Q 028251           59 IWDTAGQESFRSITRSYYRGAAGALLVYDITRR----ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA--VSKE  132 (211)
Q Consensus        59 l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~  132 (211)
                      ||||||++.+.......+..+|++|+|+|+++.    .+.+.+..    +....  ..|+++++||+|+.+...  ...+
T Consensus        87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~~~--~~~iivviNK~Dl~~~~~~~~~~~  160 (410)
T 1kk1_A           87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA----LQIIG--QKNIIIAQNKIELVDKEKALENYR  160 (410)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH----HHHHT--CCCEEEEEECGGGSCHHHHHHHHH
T ss_pred             EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHH----HHHcC--CCcEEEEEECccCCCHHHHHHHHH
Confidence            999999999888888888899999999999853    34443332    22222  358999999999965321  1223


Q ss_pred             HHHHHHHH---cCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 028251          133 EGEQFAKE---NGLLFLEASARTAQNVEEAFIKTAAKI  167 (211)
Q Consensus       133 ~~~~~~~~---~~~~~~~~s~~~~~~i~~~~~~i~~~~  167 (211)
                      ++..++..   .+++++++||+++.|++++++.|.+.+
T Consensus       161 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~  198 (410)
T 1kk1_A          161 QIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  198 (410)
T ss_dssp             HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence            34444443   357899999999999999998887655

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.85  E-value=3.3e-21  Score=160.62  Aligned_cols=153  Identities=15%  Similarity=0.116  Sum_probs=101.1

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCC-----------------------------CCCCeeeEEEEEEEEECCEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-----------------------------HDLTIGVEFGARMVTIDGRPI   55 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~   55 (211)
                      ..++|+++|++++|||||+++|+.......                             .....|.++......++....
T Consensus        32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~  111 (483)
T 3p26_A           32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA  111 (483)
T ss_dssp             CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence            468999999999999999999976521100                             001123444444444555567


Q ss_pred             EEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHH------HHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC
Q 028251           56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNH------LSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV  129 (211)
Q Consensus        56 ~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~------~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~  129 (211)
                      .+.||||||++.+......++..+|++|+|+|++++..+..      ....+......  ...|+++++||+|+.+..+.
T Consensus       112 ~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~~~~  189 (483)
T 3p26_A          112 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWSQQ  189 (483)
T ss_dssp             EEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTTCHH
T ss_pred             eEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccchHH
Confidence            88999999999999999999999999999999998643321      12222222222  13569999999999764332


Q ss_pred             CHHHHH----HHHHHc-----CCcEEEEeCCCCCCHHHH
Q 028251          130 SKEEGE----QFAKEN-----GLLFLEASARTAQNVEEA  159 (211)
Q Consensus       130 ~~~~~~----~~~~~~-----~~~~~~~s~~~~~~i~~~  159 (211)
                      ..++..    .+....     +++++++||++|.|++++
T Consensus       190 ~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el  228 (483)
T 3p26_A          190 RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  228 (483)
T ss_dssp             HHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred             HHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence            233332    333332     457999999999999853

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.85  E-value=5.1e-21  Score=152.90  Aligned_cols=120  Identities=16%  Similarity=0.218  Sum_probs=94.2

Q ss_pred             EEEEEEEEeCCCccchhhchHHHhccccEEEEEEECC----------CHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecC
Q 028251           53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT----------RRETFNHLSSWLEDARQHA-NPNMSIMLVGNKC  121 (211)
Q Consensus        53 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~  121 (211)
                      ..+.+.+|||+|++.++..+..+++.++++|+|||++          +..++.....|+..+.... ..+.|+++|+||+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~  260 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  260 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence            5788999999999999999999999999999999998          7788888888888876543 2589999999999


Q ss_pred             CCCCCCC--C-------------------CHHHHHHHHHH----------------cCCcEEEEeCCCCCCHHHHHHHHH
Q 028251          122 DLAHRRA--V-------------------SKEEGEQFAKE----------------NGLLFLEASARTAQNVEEAFIKTA  164 (211)
Q Consensus       122 Dl~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~s~~~~~~i~~~~~~i~  164 (211)
                      |+.+++.  .                   ..+++..++..                ..+.++++||+++.||+++|+.+.
T Consensus       261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~  340 (354)
T 2xtz_A          261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD  340 (354)
T ss_dssp             HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence            9843211  1                   13555555432                123468999999999999999999


Q ss_pred             HHHHHHHh
Q 028251          165 AKILQNIQ  172 (211)
Q Consensus       165 ~~~~~~~~  172 (211)
                      +.+.+..-
T Consensus       341 ~~I~~~~l  348 (354)
T 2xtz_A          341 ETLRRRNL  348 (354)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            98876543

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.85  E-value=1.9e-21  Score=152.89  Aligned_cols=156  Identities=19%  Similarity=0.121  Sum_probs=103.7

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCC-CCCeeeEEEEEEEEECCEEEEEEEEeCCCcc-c--------hhhchHH
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-DLTIGVEFGARMVTIDGRPIKLQIWDTAGQE-S--------FRSITRS   74 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~-~--------~~~~~~~   74 (211)
                      ...+|+|+|++|+|||||+|+|++..+.... .+..+.......+..+  ..++.+|||||.. .        +......
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~--~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~   84 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEG--AYQAIYVDTPGLHMEEKRAINRLMNKAASS   84 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEET--TEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEEC--CeeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence            3458999999999999999999988764321 2211211111122223  3568899999987 2        2334456


Q ss_pred             HhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEeCCCC
Q 028251           75 YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTA  153 (211)
Q Consensus        75 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~  153 (211)
                      ++..+|++++|+|+++ -+  ....|+....  ...+.|+++++||+|+........+....+....+. .++++||+++
T Consensus        85 ~l~~~D~vl~Vvd~~~-~~--~~~~~i~~~l--~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g  159 (301)
T 1ega_A           85 SIGDVELVIFVVEGTR-WT--PDDEMVLNKL--REGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG  159 (301)
T ss_dssp             CCCCEEEEEEEEETTC-CC--HHHHHHHHHH--HSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT
T ss_pred             HHhcCCEEEEEEeCCC-CC--HHHHHHHHHH--HhcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCC
Confidence            6789999999999976 22  2222332222  224799999999999865222222344455555565 6999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 028251          154 QNVEEAFIKTAAKI  167 (211)
Q Consensus       154 ~~i~~~~~~i~~~~  167 (211)
                      .|++++++.|.+.+
T Consensus       160 ~~v~~l~~~i~~~l  173 (301)
T 1ega_A          160 LNVDTIAAIVRKHL  173 (301)
T ss_dssp             TTHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHhC
Confidence            99999999887643

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.85  E-value=1.4e-21  Score=161.32  Aligned_cols=153  Identities=21%  Similarity=0.197  Sum_probs=101.8

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchH--------HH
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITR--------SY   75 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~--------~~   75 (211)
                      ..++|+++|++|+|||||+|+|++.... ....+.++.+.....+.+++..  +.+|||||...+.....        .+
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~--v~liDT~G~~~~~~~ve~~gi~~~~~~  300 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIP--VQVLDTAGIRETSDQVEKIGVERSRQA  300 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEE--EEECC--------------------CC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEE--EEEEECCccccchhHHHHHHHHHHhhh
Confidence            3578999999999999999999987543 2333444555544556677654  68999999766544333        35


Q ss_pred             hccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCC
Q 028251           76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQN  155 (211)
Q Consensus        76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  155 (211)
                      +..+|++++|+|++++.+... ..|+..+.     +.|+++|+||+|+.......  ....+.  .+.+++++||++|.|
T Consensus       301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~G  370 (462)
T 3geh_A          301 ANTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQG  370 (462)
T ss_dssp             CCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBS
T ss_pred             hhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCC
Confidence            788999999999998755443 34444442     47999999999997644332  111111  356799999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 028251          156 VEEAFIKTAAKILQ  169 (211)
Q Consensus       156 i~~~~~~i~~~~~~  169 (211)
                      ++++++.|.+.+..
T Consensus       371 i~eL~~~i~~~~~~  384 (462)
T 3geh_A          371 IDSLETAILEIVQT  384 (462)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999887743

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.85  E-value=6.4e-22  Score=159.08  Aligned_cols=168  Identities=16%  Similarity=0.278  Sum_probs=93.9

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCC-CC--------CCeeeEEEEEEEEECCEEEEEEEEeCCCc-------cc
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-HD--------LTIGVEFGARMVTIDGRPIKLQIWDTAGQ-------ES   67 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~l~l~D~~G~-------~~   67 (211)
                      ...++|+|+|++|+|||||+++|++...... +.        ++.+.......+..++....+.+|||||.       +.
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~  114 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC  114 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence            3568999999999999999999876543322 21        33333433333444566778999999998       66


Q ss_pred             hhhchH-------HHhcccc-------------EEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEecCCCCCC
Q 028251           68 FRSITR-------SYYRGAA-------------GALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR  126 (211)
Q Consensus        68 ~~~~~~-------~~~~~~d-------------~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  126 (211)
                      +..+..       .++..++             +++++++.. ..++..+. .|+..+    ..+.|+++|+||+|+...
T Consensus       115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~  189 (361)
T 2qag_A          115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTL  189 (361)
T ss_dssp             -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCH
Confidence            666655       5555443             344444431 23333333 233322    258999999999999764


Q ss_pred             CCCCH--HHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHHhhcccc
Q 028251          127 RAVSK--EEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALD  177 (211)
Q Consensus       127 ~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~~~~~~~  177 (211)
                      ..+..  +++..++...+++++++||+++.+ ++.|..+.+.+.+..+...+.
T Consensus       190 ~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip~~vv~  241 (361)
T 2qag_A          190 KERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIPFSVVG  241 (361)
T ss_dssp             HHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCSCEECC
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCCCCEeC
Confidence            43322  355566666788999999999999 889999999998877765443

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.84  E-value=5.7e-21  Score=140.44  Aligned_cols=115  Identities=22%  Similarity=0.325  Sum_probs=88.4

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCC---CCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhcc--
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV---HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG--   78 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~--   78 (211)
                      ...++|+++|++|||||||+++|.+..+...   ..++.+         .+.....+.+|||||.+.+...+..++..  
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~  116 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA---------ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRA  116 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee---------eeecCCeEEEEECCCCchHHHHHHHHHHhhc
Confidence            4678999999999999999999998876442   111211         12234568899999999988888877766  


Q ss_pred             --ccEEEEEEECC-CHHHHHHHHHHHHHHHHh----cCCCCeEEEEEecCCCCCCC
Q 028251           79 --AAGALLVYDIT-RRETFNHLSSWLEDARQH----ANPNMSIMLVGNKCDLAHRR  127 (211)
Q Consensus        79 --~d~~i~v~d~~-~~~~~~~~~~~~~~~~~~----~~~~~p~ivv~nK~Dl~~~~  127 (211)
                        +|++|+|||++ ++.++..+..|+..+...    ...+.|+++|+||+|+.+..
T Consensus       117 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  172 (193)
T 2ged_A          117 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR  172 (193)
T ss_dssp             GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence              89999999999 898998888888776544    23589999999999997644

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.84  E-value=1.1e-21  Score=162.42  Aligned_cols=153  Identities=17%  Similarity=0.118  Sum_probs=101.3

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCC--------ccchhhchHHHh
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG--------QESFRSITRSYY   76 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G--------~~~~~~~~~~~~   76 (211)
                      ...+|+|+|.+|||||||+|+|++..+... ..+.+.+.......++.....+.+|||||        ++.+......++
T Consensus        22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~  100 (456)
T 4dcu_A           22 GKPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM  100 (456)
T ss_dssp             -CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence            357999999999999999999998776432 22335665555555665566789999999        667777888899


Q ss_pred             ccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEeCCCCCC
Q 028251           77 RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQN  155 (211)
Q Consensus        77 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~  155 (211)
                      ..+|++|+|+|..+..+.  ...|+..+...  .+.|+++|+||+|+.+..    .....+. ..+. .++++||++|.|
T Consensus       101 ~~ad~il~VvD~~~~~~~--~d~~l~~~l~~--~~~pvilV~NK~D~~~~~----~~~~e~~-~lg~~~~~~iSA~~g~g  171 (456)
T 4dcu_A          101 DEADVIIFMVNGREGVTA--ADEEVAKILYR--TKKPVVLAVNKLDNTEMR----ANIYDFY-SLGFGEPYPISGTHGLG  171 (456)
T ss_dssp             HHCSEEEEEEESSSCSCH--HHHHHHHHHTT--CCSCEEEEEECC-------------CCSG-GGSSSSEEECCTTTCTT
T ss_pred             hhCCEEEEEEeCCCCCCh--HHHHHHHHHHH--cCCCEEEEEECccchhhh----hhHHHHH-HcCCCceEEeecccccc
Confidence            999999999998774332  22333333222  489999999999985422    1111111 1232 578999999999


Q ss_pred             HHHHHHHHHHHH
Q 028251          156 VEEAFIKTAAKI  167 (211)
Q Consensus       156 i~~~~~~i~~~~  167 (211)
                      +.++++.+.+.+
T Consensus       172 v~~L~~~i~~~l  183 (456)
T 4dcu_A          172 LGDLLDAVAEHF  183 (456)
T ss_dssp             HHHHHHHHHTTG
T ss_pred             hHHHHHHHHhhc
Confidence            999999887765

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.84  E-value=3.4e-20  Score=152.69  Aligned_cols=154  Identities=21%  Similarity=0.168  Sum_probs=104.1

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCC-----------------------------CCCCeeeEEEEEEEEECCEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-----------------------------HDLTIGVEFGARMVTIDGRPI   55 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~   55 (211)
                      ..++|+++|++++|||||+++|+.......                             .....|.+.......+.....
T Consensus        16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~   95 (439)
T 3j2k_7           16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKK   95 (439)
T ss_pred             ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCe
Confidence            568999999999999999999965421100                             001124444444444544556


Q ss_pred             EEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCe-EEEEEecCCCCCCC-
Q 028251           56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---FN---HLSSWLEDARQHANPNMS-IMLVGNKCDLAHRR-  127 (211)
Q Consensus        56 ~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~~---~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~-  127 (211)
                      .+.||||||++.|.......+..+|++|+|+|+++...   +.   .....+..+..   .+.| +++++||+|+.... 
T Consensus        96 ~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~---~~v~~iIvviNK~Dl~~~~~  172 (439)
T 3j2k_7           96 HFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT---AGVKHLIVLINKMDDPTVNW  172 (439)
T ss_pred             EEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH---cCCCeEEEEeecCCCcccch
Confidence            89999999999999999999999999999999988532   11   11222222222   2566 99999999985321 


Q ss_pred             -C----CCHHHHHHHHHHcC------CcEEEEeCCCCCCHHHHHH
Q 028251          128 -A----VSKEEGEQFAKENG------LLFLEASARTAQNVEEAFI  161 (211)
Q Consensus       128 -~----~~~~~~~~~~~~~~------~~~~~~s~~~~~~i~~~~~  161 (211)
                       +    ...++...++...+      ++++++||++|.|++++++
T Consensus       173 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          173 SNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence             1    11223334444433      5699999999999999765

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.84  E-value=6.6e-21  Score=152.75  Aligned_cols=119  Identities=18%  Similarity=0.227  Sum_probs=90.9

Q ss_pred             EEEEEEEeCCCccchhhchHHHhccccEEEEEEECCC----------HHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCC
Q 028251           54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLSSWLEDARQHA-NPNMSIMLVGNKCD  122 (211)
Q Consensus        54 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D  122 (211)
                      .+.+.+|||+|++.++..|..+++.++++|||||+++          ..++.....|+..+.... ..+.|+++++||+|
T Consensus       200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~D  279 (362)
T 1zcb_A          200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD  279 (362)
T ss_dssp             TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred             CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChh
Confidence            4678999999999999999999999999999999999          678888888888876542 25899999999999


Q ss_pred             CCCCC----------------CCCHHHHHHHHH-----------HcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Q 028251          123 LAHRR----------------AVSKEEGEQFAK-----------ENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ  172 (211)
Q Consensus       123 l~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~~  172 (211)
                      +.+++                ....+++..++.           ..++.++++||+++.||+++|+.+.+.+.+..-
T Consensus       280 L~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~l  356 (362)
T 1zcb_A          280 LLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNL  356 (362)
T ss_dssp             HHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHHHH
Confidence            85321                256677777652           235678999999999999999999998876543

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.83  E-value=3.3e-21  Score=158.65  Aligned_cols=160  Identities=19%  Similarity=0.226  Sum_probs=104.9

Q ss_pred             CCCCceeeEEEEcCCCCCHHHHHHHHHhC--CCCCCC---------------------------CCCeeeEEEEEEEEEC
Q 028251            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDK--RFQPVH---------------------------DLTIGVEFGARMVTID   51 (211)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~--~~~~~~---------------------------~~~~~~~~~~~~~~~~   51 (211)
                      |+....++|+++|+.++|||||+++|+..  .+....                           ....+.+.......++
T Consensus         1 ~~~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~   80 (435)
T 1jny_A            1 MSQKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFE   80 (435)
T ss_dssp             ---CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEE
T ss_pred             CCCCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEe
Confidence            56667899999999999999999999864  222110                           0011333333333444


Q ss_pred             CEEEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHH----hcCCC-CeEEEEEecCCCCCC
Q 028251           52 GRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQ----HANPN-MSIMLVGNKCDLAHR  126 (211)
Q Consensus        52 ~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~----~~~~~-~p~ivv~nK~Dl~~~  126 (211)
                      .....+.||||||++.+......++..+|++|+|+|+++ .+|+....|......    ....+ .|+++++||+|+.+.
T Consensus        81 ~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~  159 (435)
T 1jny_A           81 TKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEP  159 (435)
T ss_dssp             CSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSS
T ss_pred             cCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCc
Confidence            455679999999999999999999999999999999998 566643322211111    11124 468999999999652


Q ss_pred             C--C----CCHHHHHHHHHHcC-----CcEEEEeCCCCCCHHHHHH
Q 028251          127 R--A----VSKEEGEQFAKENG-----LLFLEASARTAQNVEEAFI  161 (211)
Q Consensus       127 ~--~----~~~~~~~~~~~~~~-----~~~~~~s~~~~~~i~~~~~  161 (211)
                      .  +    ...+++..++...+     ++++++||++|.|+.++++
T Consensus       160 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          160 PYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             cccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence            1  1    11344556666655     6799999999999986654

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.83  E-value=9.7e-23  Score=170.37  Aligned_cols=160  Identities=21%  Similarity=0.210  Sum_probs=112.3

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      +..++|+++|++++|||||+++|.+..+.....+..+.++....+..++ ...+.||||||++.|...+..++..+|++|
T Consensus         2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vI   80 (537)
T 3izy_P            2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVI   80 (537)
T ss_dssp             CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEE
Confidence            3568999999999999999999997765544444444444333333321 235789999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC-CHHHHHHH---HHHc--CCcEEEEeCCCCCCHH
Q 028251           84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV-SKEEGEQF---AKEN--GLLFLEASARTAQNVE  157 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~---~~~~--~~~~~~~s~~~~~~i~  157 (211)
                      +|+|+++....+....    +......+.|+++++||+|+.+.... ...+....   +..+  .++++++||++|.|++
T Consensus        81 LVVDa~dg~~~qt~e~----l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~  156 (537)
T 3izy_P           81 LVVAADDGVMKQTVES----IQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMM  156 (537)
T ss_dssp             EECBSSSCCCHHHHHH----HHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSH
T ss_pred             EEEECCCCccHHHHHH----HHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCch
Confidence            9999998654333322    22233347899999999999643211 11112111   1111  2479999999999999


Q ss_pred             HHHHHHHHHHH
Q 028251          158 EAFIKTAAKIL  168 (211)
Q Consensus       158 ~~~~~i~~~~~  168 (211)
                      ++++.|...+.
T Consensus       157 eLle~I~~l~~  167 (537)
T 3izy_P          157 ALAEATIALAE  167 (537)
T ss_dssp             HHHHHHHHHHT
T ss_pred             hHHHHHHHhhh
Confidence            99999887653

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.83  E-value=9.1e-21  Score=152.68  Aligned_cols=147  Identities=12%  Similarity=0.052  Sum_probs=107.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEE
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD   87 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   87 (211)
                      +|+++|++++|||||+++|+          ..+.+.......++.....+.||||||++.|.......+..+|++|+|+|
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~----------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG----------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS----------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHH----------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence            89999999999999999998          12333333334455445678999999999998888888999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCeE-EEEEe-cCCCCCCCCCC--HHHHHHHHHHc---CCcEEE--EeCCC---CCC
Q 028251           88 ITRRETFNHLSSWLEDARQHANPNMSI-MLVGN-KCDLAHRRAVS--KEEGEQFAKEN---GLLFLE--ASART---AQN  155 (211)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~n-K~Dl~~~~~~~--~~~~~~~~~~~---~~~~~~--~s~~~---~~~  155 (211)
                       ++ ..+.+...++..+...   +.|. ++++| |+|+ +.....  .++...++...   .+++++  +||++   +.|
T Consensus        93 -~~-g~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g  166 (370)
T 2elf_A           93 -PQ-GLDAHTGECIIALDLL---GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG  166 (370)
T ss_dssp             -TT-CCCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred             -CC-CCcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence             54 3344455555555443   6777 88899 9999 432111  13344444433   368999  99999   999


Q ss_pred             HHHHHHHHHHHHHHH
Q 028251          156 VEEAFIKTAAKILQN  170 (211)
Q Consensus       156 i~~~~~~i~~~~~~~  170 (211)
                      ++++++.|.+.+...
T Consensus       167 i~~L~~~l~~~~~~~  181 (370)
T 2elf_A          167 VDELKARINEVAEKI  181 (370)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcccc
Confidence            999999998877543

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.83  E-value=2.2e-20  Score=153.79  Aligned_cols=155  Identities=19%  Similarity=0.139  Sum_probs=104.8

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCC--CC----------CCCC-------------------eeeEEEEEEEEECC
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQ--PV----------HDLT-------------------IGVEFGARMVTIDG   52 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~--~~----------~~~~-------------------~~~~~~~~~~~~~~   52 (211)
                      ...++|+++|+.++|||||+++|++....  ..          ...+                   .|.+.......+..
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~  101 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST  101 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence            35689999999999999999999865411  10          0011                   12222222233344


Q ss_pred             EEEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC---
Q 028251           53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV---  129 (211)
Q Consensus        53 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~---  129 (211)
                      ....+.||||||++.+......++..+|++|+|+|+++... .....++..+....  ..|+++++||+|+.+..+.   
T Consensus       102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~~--~~~iIvviNK~Dl~~~~~~~~~  178 (434)
T 1zun_B          102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLLG--IKHIVVAINKMDLNGFDERVFE  178 (434)
T ss_dssp             SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHTT--CCEEEEEEECTTTTTSCHHHHH
T ss_pred             CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHcC--CCeEEEEEEcCcCCcccHHHHH
Confidence            45678999999999999888899999999999999988542 22334444333321  2469999999999753211   


Q ss_pred             -CHHHHHHHHHHcC-----CcEEEEeCCCCCCHHHHHH
Q 028251          130 -SKEEGEQFAKENG-----LLFLEASARTAQNVEEAFI  161 (211)
Q Consensus       130 -~~~~~~~~~~~~~-----~~~~~~s~~~~~~i~~~~~  161 (211)
                       ..++...++...+     ++++++||++|.|++++++
T Consensus       179 ~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~  216 (434)
T 1zun_B          179 SIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE  216 (434)
T ss_dssp             HHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred             HHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence             1234555666666     5799999999999998544

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.83  E-value=5.5e-21  Score=156.12  Aligned_cols=148  Identities=17%  Similarity=0.146  Sum_probs=104.7

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhC--------CCCCC--C-----CCCeeeEEEEEEEEECCEEEEEEEEeCCCccch
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDK--------RFQPV--H-----DLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF   68 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~--------~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~   68 (211)
                      ...++|+++|++++|||||+++|++.        .+...  .     ....+.++......++.....+.||||||++.|
T Consensus         9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f   88 (405)
T 2c78_A            9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY   88 (405)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred             CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence            45789999999999999999999873        11110  0     012234444444555555567899999999999


Q ss_pred             hhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEecCCCCCCCCC---CHHHHHHHHHHcC--
Q 028251           69 RSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAV---SKEEGEQFAKENG--  142 (211)
Q Consensus        69 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~--  142 (211)
                      .......+..+|++|+|+|+++... .....++..+...   +.| +++++||+|+.+....   ..++...++...+  
T Consensus        89 ~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~---~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~  164 (405)
T 2c78_A           89 IKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFP  164 (405)
T ss_dssp             HHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhccc
Confidence            9889999999999999999988643 3344555554443   678 8899999999642111   1124555666554  


Q ss_pred             ---CcEEEEeCCCCCC
Q 028251          143 ---LLFLEASARTAQN  155 (211)
Q Consensus       143 ---~~~~~~s~~~~~~  155 (211)
                         ++++++||++|.|
T Consensus       165 ~~~~~~i~~SA~~g~~  180 (405)
T 2c78_A          165 GDEVPVIRGSALLALE  180 (405)
T ss_dssp             TTTSCEEECCHHHHHH
T ss_pred             ccCCCEEEccHHHhhh
Confidence               6799999999977

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.83  E-value=1.1e-20  Score=149.51  Aligned_cols=121  Identities=17%  Similarity=0.232  Sum_probs=96.6

Q ss_pred             EECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEECC----------CHHHHHHHHHHHHHHHHhcC-CCCeEEEE
Q 028251           49 TIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT----------RRETFNHLSSWLEDARQHAN-PNMSIMLV  117 (211)
Q Consensus        49 ~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~-~~~p~ivv  117 (211)
                      .+....+.+.+||++|++.++..|..+++.++++|+|||++          +..++.....|+..+..... .+.|++++
T Consensus       155 ~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv  234 (340)
T 4fid_A          155 DFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIF  234 (340)
T ss_dssp             EEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEE
T ss_pred             EEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEE
Confidence            33334578999999999999999999999999999999998          66778888888877765432 58999999


Q ss_pred             EecCCCCCC---------------CCCCHHHHHHHHHH---------------------------cCCcEEEEeCCCCCC
Q 028251          118 GNKCDLAHR---------------RAVSKEEGEQFAKE---------------------------NGLLFLEASARTAQN  155 (211)
Q Consensus       118 ~nK~Dl~~~---------------~~~~~~~~~~~~~~---------------------------~~~~~~~~s~~~~~~  155 (211)
                      +||+|+.++               .....+++.+++..                           ..+.++++||+++.+
T Consensus       235 ~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~n  314 (340)
T 4fid_A          235 LNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSN  314 (340)
T ss_dssp             EECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHH
T ss_pred             EECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHH
Confidence            999998431               11245666554433                           236689999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 028251          156 VEEAFIKTAAKILQ  169 (211)
Q Consensus       156 i~~~~~~i~~~~~~  169 (211)
                      |+.+|+.+.+.+++
T Consensus       315 v~~vF~~v~~~Il~  328 (340)
T 4fid_A          315 IKRVFMLAVDVIMK  328 (340)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999999988

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.82  E-value=1.3e-20  Score=157.88  Aligned_cols=117  Identities=20%  Similarity=0.182  Sum_probs=82.1

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCC---------------CCC-----CCeeeEEEEEEEEECCEEEEEEEEeCCC
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP---------------VHD-----LTIGVEFGARMVTIDGRPIKLQIWDTAG   64 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~---------------~~~-----~~~~~~~~~~~~~~~~~~~~l~l~D~~G   64 (211)
                      ...+|+|+|++++|||||+++|+......               ...     ...+.+.......+......+.||||||
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG   91 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG   91 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred             cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence            56899999999999999999997221100               000     0012222222223333346789999999


Q ss_pred             ccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCC
Q 028251           65 QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH  125 (211)
Q Consensus        65 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  125 (211)
                      +..+......+++.+|++|+|+|+++.........| ..+..   .+.|+++|+||+|+..
T Consensus        92 ~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~---~~iPiivviNK~Dl~~  148 (528)
T 3tr5_A           92 HADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL---RHTPIMTFINKMDRDT  148 (528)
T ss_dssp             STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT---TTCCEEEEEECTTSCC
T ss_pred             chhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEeCCCCcc
Confidence            999999999999999999999999987665555444 33332   3789999999999854

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.82  E-value=9.6e-20  Score=154.42  Aligned_cols=160  Identities=23%  Similarity=0.186  Sum_probs=107.0

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCC----CCeeeEEEEEEE------------EECCEEEEEEEEeCCCccch
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD----LTIGVEFGARMV------------TIDGRPIKLQIWDTAGQESF   68 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~----~~~~~~~~~~~~------------~~~~~~~~l~l~D~~G~~~~   68 (211)
                      ..++|+++|++++|||||+++|++..+.....    .+.+..+.....            .++.....+.||||||++.|
T Consensus         4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F   83 (594)
T 1g7s_A            4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (594)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence            46899999999999999999998765433221    122222211000            00011124889999999999


Q ss_pred             hhchHHHhccccEEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC-------------CH-
Q 028251           69 RSITRSYYRGAAGALLVYDITR---RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV-------------SK-  131 (211)
Q Consensus        69 ~~~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-------------~~-  131 (211)
                      ..++...+..+|++|+|+|+++   +.++..+..    +..   .+.|+++++||+|+......             .. 
T Consensus        84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~  156 (594)
T 1g7s_A           84 TTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ  156 (594)
T ss_dssp             TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence            9999888999999999999999   555554432    222   37999999999999642110             00 


Q ss_pred             --H-------HHHHHHHHcC---------------CcEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 028251          132 --E-------EGEQFAKENG---------------LLFLEASARTAQNVEEAFIKTAAKILQNI  171 (211)
Q Consensus       132 --~-------~~~~~~~~~~---------------~~~~~~s~~~~~~i~~~~~~i~~~~~~~~  171 (211)
                        +       +......+.+               ++++++||++|.|+++++++|...+....
T Consensus       157 v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~  220 (594)
T 1g7s_A          157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYL  220 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccccc
Confidence              0       1111112222               37999999999999999999988776443

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.82  E-value=2.1e-20  Score=152.17  Aligned_cols=158  Identities=19%  Similarity=0.155  Sum_probs=108.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCC-------CCCC-------CCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhc
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKR-------FQPV-------HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI   71 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~   71 (211)
                      .++|+++|+.++|||||+++|++..       +...       .....+.+.......++.....+.||||||++.|...
T Consensus         3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~   82 (397)
T 1d2e_A            3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN   82 (397)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred             eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHH
Confidence            5899999999999999999998631       1100       0012244444444555555567899999999999888


Q ss_pred             hHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEecCCCCCCCC---CCHHHHHHHHHHcC-----
Q 028251           72 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRA---VSKEEGEQFAKENG-----  142 (211)
Q Consensus        72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~---~~~~~~~~~~~~~~-----  142 (211)
                      ....+..+|++|+|+|+++....+. ..++..+..   .+.| +++++||+|+.+...   ...++...++...+     
T Consensus        83 ~~~~~~~aD~~ilVvda~~g~~~qt-~e~l~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~  158 (397)
T 1d2e_A           83 MITGTAPLDGCILVVAANDGPMPQT-REHLLLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEE  158 (397)
T ss_dssp             HHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred             HHhhHhhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCccc
Confidence            8889999999999999998543222 233333333   2678 689999999964211   11234555666655     


Q ss_pred             CcEEEEeCCCCCC----------HHHHHHHHHHHH
Q 028251          143 LLFLEASARTAQN----------VEEAFIKTAAKI  167 (211)
Q Consensus       143 ~~~~~~s~~~~~~----------i~~~~~~i~~~~  167 (211)
                      ++++++||++|.+          +.++++.|.+.+
T Consensus       159 ~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~  193 (397)
T 1d2e_A          159 TPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (397)
T ss_dssp             SCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             CcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence            5899999999764          666666665543

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.81  E-value=7.4e-21  Score=157.75  Aligned_cols=157  Identities=18%  Similarity=0.172  Sum_probs=90.1

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCC--CCC----------------------CC-----CCCeeeEEEEEEEEECCEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKR--FQP----------------------VH-----DLTIGVEFGARMVTIDGRP   54 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~--~~~----------------------~~-----~~~~~~~~~~~~~~~~~~~   54 (211)
                      ...++|+++|+.++|||||+++|+...  +..                      ..     ....+.++......+....
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~  120 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  120 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence            456899999999999999999997521  110                      00     0011222222222222234


Q ss_pred             EEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCe-EEEEEecCCCCCCC--C
Q 028251           55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE---TFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRR--A  128 (211)
Q Consensus        55 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~--~  128 (211)
                      ..+.||||||++.|.......+..+|++|+|+|+++..   +|....+|+..+......+.| ++|++||+|+....  +
T Consensus       121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~  200 (467)
T 1r5b_A          121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSE  200 (467)
T ss_dssp             EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCH
T ss_pred             eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccH
Confidence            57899999999999999999999999999999999863   222222232222222223677 99999999995421  0


Q ss_pred             ----CCHHHHHHHHHHc-------CCcEEEEeCCCCCCHHHHH
Q 028251          129 ----VSKEEGEQFAKEN-------GLLFLEASARTAQNVEEAF  160 (211)
Q Consensus       129 ----~~~~~~~~~~~~~-------~~~~~~~s~~~~~~i~~~~  160 (211)
                          ...++...++...       +++++++||++|.|+.+++
T Consensus       201 ~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          201 ERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             HHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence                1122355555555       3569999999999998866

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.80  E-value=3.4e-20  Score=145.40  Aligned_cols=161  Identities=16%  Similarity=0.146  Sum_probs=102.1

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCC----Ceee----------------------EEE-------------
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL----TIGV----------------------EFG-------------   44 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~----~~~~----------------------~~~-------------   44 (211)
                      ...++|+|+|.+|+|||||+|+|++..+.+....    ..+.                      +..             
T Consensus        24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i  103 (299)
T 2aka_B           24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  103 (299)
T ss_dssp             CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence            3568999999999999999999999887432211    0110                      000             


Q ss_pred             ----------EEEEEECC-EEEEEEEEeCCCcc-------------chhhchHHHhccccEEE-EEEECCCHHHHHHHHH
Q 028251           45 ----------ARMVTIDG-RPIKLQIWDTAGQE-------------SFRSITRSYYRGAAGAL-LVYDITRRETFNHLSS   99 (211)
Q Consensus        45 ----------~~~~~~~~-~~~~l~l~D~~G~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~~~~~~~~   99 (211)
                                ...+.+.+ ....+.||||||..             .+......++..++.+| +|+|+++..+......
T Consensus       104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~  183 (299)
T 2aka_B          104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  183 (299)
T ss_dssp             CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred             cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence                      00000000 02468999999964             34456777888888766 7999987544333223


Q ss_pred             HHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH--cC-CcEEEEeCCCCCCHHHHHHHHHHHH
Q 028251          100 WLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE--NG-LLFLEASARTAQNVEEAFIKTAAKI  167 (211)
Q Consensus       100 ~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~~-~~~~~~s~~~~~~i~~~~~~i~~~~  167 (211)
                      +...+   ...+.|+++|+||+|+.+......+........  .+ .+++++||+++.|++++++.|.+..
T Consensus       184 ~~~~~---~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~  251 (299)
T 2aka_B          184 IAKEV---DPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER  251 (299)
T ss_dssp             HHHHH---CTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred             HHHHh---CCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence            33333   234789999999999976443222322211001  12 3578999999999999999988744

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.80  E-value=2.3e-19  Score=133.59  Aligned_cols=156  Identities=15%  Similarity=0.145  Sum_probs=98.5

Q ss_pred             CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc----------hhhch
Q 028251            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES----------FRSIT   72 (211)
Q Consensus         3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~----------~~~~~   72 (211)
                      .....+|+++|++|||||||+|+|++..+.....++.|.+.....+.+++   .+.+||+||...          +....
T Consensus        23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~   99 (210)
T 1pui_A           23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRAL   99 (210)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHH
Confidence            34567899999999999999999998764444444555554444444433   467999999742          22223


Q ss_pred             HHHh---ccccEEEEEEECCCHHHHHH--HHHHHHHHHHhcCCCCeEEEEEecCCCCCCCC--CCHHHHHHHHHHcC--C
Q 028251           73 RSYY---RGAAGALLVYDITRRETFNH--LSSWLEDARQHANPNMSIMLVGNKCDLAHRRA--VSKEEGEQFAKENG--L  143 (211)
Q Consensus        73 ~~~~---~~~d~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~--~  143 (211)
                      ..++   ..++++++++|+.++.+...  +..|+   ..   .+.|++++.||+|+....+  ...+.+..++...+  +
T Consensus       100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~---~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~  173 (210)
T 1pui_A          100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWA---VD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDV  173 (210)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH---HH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCE
T ss_pred             HHHHHhhhcccEEEEEEECCCCCchhHHHHHHHH---HH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCC
Confidence            3344   46889999999988644322  22222   11   3789999999999854321  11234445554444  4


Q ss_pred             cEEEEeCCCCCCHHHHHHHHHHHH
Q 028251          144 LFLEASARTAQNVEEAFIKTAAKI  167 (211)
Q Consensus       144 ~~~~~s~~~~~~i~~~~~~i~~~~  167 (211)
                      .++++|++++.+++++++.|.+.+
T Consensus       174 ~~~~~Sal~~~~~~~l~~~l~~~~  197 (210)
T 1pui_A          174 QVETFSSLKKQGVDKLRQKLDTWF  197 (210)
T ss_dssp             EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             ceEEEeecCCCCHHHHHHHHHHHH
Confidence            688999999999999999888765

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.80  E-value=1.6e-20  Score=159.96  Aligned_cols=155  Identities=15%  Similarity=0.122  Sum_probs=101.8

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCC-----------------------------CCeeeEEEEEEEEECCEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-----------------------------LTIGVEFGARMVTIDGRPI   55 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~   55 (211)
                      ..++|+++|++++|||||+++|++........                             ...|+++......+.....
T Consensus       166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~~  245 (611)
T 3izq_1          166 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA  245 (611)
T ss_dssp             CCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSSC
T ss_pred             CceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCCc
Confidence            46899999999999999999998663321110                             0013333333333444456


Q ss_pred             EEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHH---HHHHHHHHHHHHHhcCCC-CeEEEEEecCCCCCCCCCCH
Q 028251           56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---FNHLSSWLEDARQHANPN-MSIMLVGNKCDLAHRRAVSK  131 (211)
Q Consensus        56 ~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~~~~~~~~~~~~~~~~~~-~p~ivv~nK~Dl~~~~~~~~  131 (211)
                      .+.||||||++.+.......+..+|++|+|+|+++...   +.....+...+......+ .|++||+||+|+.+......
T Consensus       246 ~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~~  325 (611)
T 3izq_1          246 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRF  325 (611)
T ss_dssp             EEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHHH
T ss_pred             eEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHHHH
Confidence            78999999999999999999999999999999987521   000111222222111224 45999999999975322222


Q ss_pred             H----HHHHHHHHc-----CCcEEEEeCCCCCCHHHH
Q 028251          132 E----EGEQFAKEN-----GLLFLEASARTAQNVEEA  159 (211)
Q Consensus       132 ~----~~~~~~~~~-----~~~~~~~s~~~~~~i~~~  159 (211)
                      +    +...++...     +++++++||++|.|+.++
T Consensus       326 ~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          326 EEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            2    233344433     357999999999999876

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.79  E-value=1.9e-19  Score=159.75  Aligned_cols=160  Identities=18%  Similarity=0.148  Sum_probs=107.0

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCC-------CCC-------CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchh
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKR-------FQP-------VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR   69 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~   69 (211)
                      ...++|+++|+.++|||||+++|++..       +..       ......|.++....+.++.....+.||||||++.|.
T Consensus       294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~  373 (1289)
T 3avx_A          294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV  373 (1289)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence            356899999999999999999998631       000       111233444444444555556678999999999999


Q ss_pred             hchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEecCCCCCCCCC---CHHHHHHHHHHcC---
Q 028251           70 SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAV---SKEEGEQFAKENG---  142 (211)
Q Consensus        70 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~---  142 (211)
                      ......+..+|++|+|+|+++.... +...++..+...   +.| ++|++||+|+.+....   ..+++..++...+   
T Consensus       374 ~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~  449 (1289)
T 3avx_A          374 KNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPG  449 (1289)
T ss_dssp             HHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccc
Confidence            8888899999999999999885322 233444444433   678 7899999999752211   1234556666655   


Q ss_pred             --CcEEEEeCCCC--------CCHHHHHHHHHHHH
Q 028251          143 --LLFLEASARTA--------QNVEEAFIKTAAKI  167 (211)
Q Consensus       143 --~~~~~~s~~~~--------~~i~~~~~~i~~~~  167 (211)
                        ++++++||++|        .|+.++++.|.+.+
T Consensus       450 ~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I  484 (1289)
T 3avx_A          450 DDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI  484 (1289)
T ss_dssp             TTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred             cceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence              57999999999        34666666655433

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.79  E-value=3.3e-19  Score=147.54  Aligned_cols=156  Identities=19%  Similarity=0.186  Sum_probs=102.9

Q ss_pred             CCC-CceeeEEEEcCCCCCHHHHHHHHHhC--CCCCC---------------C-------C-----CCeeeEEEEEEEEE
Q 028251            1 MSY-DYLFKYIIIGDTGVGKSCLLLQFTDK--RFQPV---------------H-------D-----LTIGVEFGARMVTI   50 (211)
Q Consensus         1 m~~-~~~~~i~vvG~~~~GKSsli~~l~~~--~~~~~---------------~-------~-----~~~~~~~~~~~~~~   50 (211)
                      |.. ...++|+++|++++|||||+++|++.  .+...               .       .     ...|.+.......+
T Consensus         1 M~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~   80 (458)
T 1f60_A            1 MGKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKF   80 (458)
T ss_dssp             -CCCCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEE
T ss_pred             CCCCCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEE
Confidence            553 35689999999999999999999864  11110               0       0     00122222222334


Q ss_pred             CCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHH---HHH---HHHHHHHHHHHhcCCCCe-EEEEEecCCC
Q 028251           51 DGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE---TFN---HLSSWLEDARQHANPNMS-IMLVGNKCDL  123 (211)
Q Consensus        51 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl  123 (211)
                      +.....+.||||||++.|.......+..+|++|+|+|+++..   +|.   ....++.....   .+.| +++++||+|+
T Consensus        81 ~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl  157 (458)
T 1f60_A           81 ETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDS  157 (458)
T ss_dssp             ECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGG
T ss_pred             ecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEcccc
Confidence            444567999999999999999999999999999999998763   121   22222222222   2555 8999999999


Q ss_pred             CCCCCC----CHHHHHHHHHHcC-----CcEEEEeCCCCCCHHHH
Q 028251          124 AHRRAV----SKEEGEQFAKENG-----LLFLEASARTAQNVEEA  159 (211)
Q Consensus       124 ~~~~~~----~~~~~~~~~~~~~-----~~~~~~s~~~~~~i~~~  159 (211)
                      .+....    ..++...++...+     ++++++||++|.|+.+.
T Consensus       158 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          158 VKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             GTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             ccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            732111    1233445555554     67999999999999754

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.78  E-value=3.9e-18  Score=131.46  Aligned_cols=125  Identities=17%  Similarity=0.137  Sum_probs=86.0

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCC-CCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhc------
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYR------   77 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~------   77 (211)
                      ..++|+++|.+|+|||||+|+|++...... ..+..+.......+..++.  .+.||||||++.+......+++      
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~l~liDTpG~~~~~~~~~~~~~~i~~~l  112 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGF--TINIIDTPGLVEAGYVNHQALELIKGFL  112 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTE--EEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCe--eEEEEECCCCCCcccchHHHHHHHHHHH
Confidence            579999999999999999999998875332 2222233333334455554  6889999999887765555543      


Q ss_pred             ---cccEEEEEEECCCHHHHHH-HHHHHHHHHHhcCCC--CeEEEEEecCCCCCCCCCCHH
Q 028251           78 ---GAAGALLVYDITRRETFNH-LSSWLEDARQHANPN--MSIMLVGNKCDLAHRRAVSKE  132 (211)
Q Consensus        78 ---~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~--~p~ivv~nK~Dl~~~~~~~~~  132 (211)
                         .+|++++|++++... +.. ...|+..+......+  .|+++++||+|+........+
T Consensus       113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e  172 (262)
T 3def_A          113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYE  172 (262)
T ss_dssp             TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHH
T ss_pred             hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHH
Confidence               789999999987644 322 235666666554322  499999999999654444433

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.78  E-value=5.5e-21  Score=158.57  Aligned_cols=153  Identities=19%  Similarity=0.209  Sum_probs=104.1

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ...++|+++|+.++|||||+++|....+.....+..+.+.....+..++  ..+.||||||++.|..++...+..+|++|
T Consensus         2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI   79 (501)
T 1zo1_I            2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV   79 (501)
T ss_dssp             CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence            3568999999999999999999987654433322222222222222233  45789999999999999988999999999


Q ss_pred             EEEECCCH---HHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCC--CCCHHH--HHHHHHHc--CCcEEEEeCCCCC
Q 028251           84 LVYDITRR---ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR--AVSKEE--GEQFAKEN--GLLFLEASARTAQ  154 (211)
Q Consensus        84 ~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~--~~~~~~~~--~~~~~~~s~~~~~  154 (211)
                      +|+|+++.   .+.+.+    .....   .+.|+++++||+|+.+..  .+..+.  ...++...  .++++++||++|.
T Consensus        80 LVVda~~g~~~qT~e~l----~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~  152 (501)
T 1zo1_I           80 LVVAADDGVMPQTIEAI----QHAKA---AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGT  152 (501)
T ss_dssp             EEEETTTBSCTTTHHHH----HHHHH---TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCT
T ss_pred             EEeecccCccHHHHHHH----HHHHh---cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeecc
Confidence            99999883   333222    22222   378999999999996421  111000  00011112  2689999999999


Q ss_pred             CHHHHHHHHHH
Q 028251          155 NVEEAFIKTAA  165 (211)
Q Consensus       155 ~i~~~~~~i~~  165 (211)
                      |++++++.|..
T Consensus       153 gI~eLle~I~~  163 (501)
T 1zo1_I          153 GIDELLDAILL  163 (501)
T ss_dssp             TCTTHHHHTTT
T ss_pred             Ccchhhhhhhh
Confidence            99999998764

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.77  E-value=3e-18  Score=147.50  Aligned_cols=117  Identities=16%  Similarity=0.113  Sum_probs=83.4

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCC----------------CeeeEEEEEEEEECCEEEEEEEEeCCCccc
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL----------------TIGVEFGARMVTIDGRPIKLQIWDTAGQES   67 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~   67 (211)
                      +...+|+|+|+.|+|||||+++|++.........                ..+.++......+....+.++||||||++.
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~   86 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD   86 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence            4567999999999999999999985432211000                012233333333433457789999999999


Q ss_pred             hhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCC
Q 028251           68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA  124 (211)
Q Consensus        68 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  124 (211)
                      +......++..+|++++|+|+.+..... ...++..+..   .+.|+++++||+|+.
T Consensus        87 f~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~---~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           87 FVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAER---LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             GHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred             hHHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHH---ccCCEEEEecCCchh
Confidence            9998999999999999999988754332 2344444443   379999999999986

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.77  E-value=3.8e-18  Score=138.89  Aligned_cols=161  Identities=16%  Similarity=0.107  Sum_probs=109.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccch----hhchHHH---hccc
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF----RSITRSY---YRGA   79 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~----~~~~~~~---~~~~   79 (211)
                      ..|+|+|++|||||||+++|.+........+..+.......+.+++ ...+.+||+||....    ..+...+   +..+
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era  236 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIART  236 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence            3589999999999999999997743222222222222233344443 245789999997431    1222222   4568


Q ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHH
Q 028251           80 AGALLVYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVE  157 (211)
Q Consensus        80 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  157 (211)
                      +.+++++|++ ...+..+..|...+..+..  ...|.++++||+|+...  ...++........+.+++.+||+++.|++
T Consensus       237 ~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~  313 (416)
T 1udx_A          237 RVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLP  313 (416)
T ss_dssp             SEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred             HhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHH
Confidence            9999999997 4456667777666655431  26899999999998653  22344445555567899999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 028251          158 EAFIKTAAKILQNI  171 (211)
Q Consensus       158 ~~~~~i~~~~~~~~  171 (211)
                      ++++.|.+.+.+..
T Consensus       314 eL~~~i~~~l~~~~  327 (416)
T 1udx_A          314 ALKEALHALVRSTP  327 (416)
T ss_dssp             HHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999886543

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.76  E-value=4e-18  Score=131.96  Aligned_cols=126  Identities=13%  Similarity=0.125  Sum_probs=82.0

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHH-------H--
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRS-------Y--   75 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~-------~--   75 (211)
                      ..++|+++|.+|+|||||+|+|++..+...... .+.+.......++.....+.+|||||...+......       +  
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~  116 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPF-QSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL  116 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSS-SCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCcccccCC-CCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence            478999999999999999999998876432211 122222222333333456899999998776543221       1  


Q ss_pred             hccccEEEEEEECCCHHHHHH-HHHHHHHHHHhcCCC--CeEEEEEecCCCCCCCCCCHH
Q 028251           76 YRGAAGALLVYDITRRETFNH-LSSWLEDARQHANPN--MSIMLVGNKCDLAHRRAVSKE  132 (211)
Q Consensus        76 ~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~--~p~ivv~nK~Dl~~~~~~~~~  132 (211)
                      ...+|++|+|+|++.. ++.. ...|+..+......+  .|+++|+||+|+........+
T Consensus       117 ~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~  175 (270)
T 1h65_A          117 DKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYD  175 (270)
T ss_dssp             TCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHH
T ss_pred             cCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHH
Confidence            2468999999998653 2322 235666665544322  699999999999655443433

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.76  E-value=6.7e-19  Score=141.69  Aligned_cols=158  Identities=17%  Similarity=0.172  Sum_probs=105.2

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeE---EEE------------------------------------
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVE---FGA------------------------------------   45 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~---~~~------------------------------------   45 (211)
                      ..++|+|+|++|||||||+|+|++..+.+.....++..   ...                                    
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~  112 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD  112 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence            45699999999999999999999987744433222100   000                                    


Q ss_pred             -------------EEEEE-CCEEEEEEEEeCCCccch-------------hhchHHHhccccEEEEEEECCCHHHHHHHH
Q 028251           46 -------------RMVTI-DGRPIKLQIWDTAGQESF-------------RSITRSYYRGAAGALLVYDITRRETFNHLS   98 (211)
Q Consensus        46 -------------~~~~~-~~~~~~l~l~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~   98 (211)
                                   ..+.+ ......+.+|||||...+             ..+...++..+|++|+|++..+.....  .
T Consensus       113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~  190 (360)
T 3t34_A          113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--S  190 (360)
T ss_dssp             HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--C
T ss_pred             HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--H
Confidence                         00000 001224789999997765             557778899999999999875432211  3


Q ss_pred             HHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Q 028251           99 SWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA  164 (211)
Q Consensus        99 ~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~  164 (211)
                      .|+..+......+.|+++|+||+|+.+......+.........+.+|+.++++.+.++++.+..+.
T Consensus       191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~  256 (360)
T 3t34_A          191 DAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIA  256 (360)
T ss_dssp             HHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHH
T ss_pred             HHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHH
Confidence            444445555555789999999999976554444444444444677899999999888777655433

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.76  E-value=6e-18  Score=146.23  Aligned_cols=162  Identities=14%  Similarity=0.173  Sum_probs=106.1

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCC-CCCee----e--------EEE---------------------------
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-DLTIG----V--------EFG---------------------------   44 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~-~~~~~----~--------~~~---------------------------   44 (211)
                      ..++|+|+|.+|+|||||+|+|++....+.. .+++.    .        +..                           
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~  147 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK  147 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence            4689999999999999999999988765432 22221    0        000                           


Q ss_pred             --------------EEEEEECCEE--EEEEEEeCCCccc---hhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHH
Q 028251           45 --------------ARMVTIDGRP--IKLQIWDTAGQES---FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDAR  105 (211)
Q Consensus        45 --------------~~~~~~~~~~--~~l~l~D~~G~~~---~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~  105 (211)
                                    ...+..+...  ..+.||||||...   .......++..+|++|+|+|++++.+......|...+.
T Consensus       148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~  227 (695)
T 2j69_A          148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK  227 (695)
T ss_dssp             HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred             HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence                          0000111100  2478999999654   33456678899999999999998877666555544433


Q ss_pred             HhcCCCCeEEEEEecCCCCCCCCCCHH---H-------HHHH----H-HHc--------CCcEEEEeCC-----------
Q 028251          106 QHANPNMSIMLVGNKCDLAHRRAVSKE---E-------GEQF----A-KEN--------GLLFLEASAR-----------  151 (211)
Q Consensus       106 ~~~~~~~p~ivv~nK~Dl~~~~~~~~~---~-------~~~~----~-~~~--------~~~~~~~s~~-----------  151 (211)
                      .   .+.|+++|+||+|+........+   +       ....    . ...        ..+++++||+           
T Consensus       228 ~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~  304 (695)
T 2j69_A          228 G---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQ  304 (695)
T ss_dssp             T---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTT
T ss_pred             h---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCch
Confidence            2   36789999999998643211110   1       1111    1 111        2369999999           


Q ss_pred             ---CCCCHHHHHHHHHHHHHH
Q 028251          152 ---TAQNVEEAFIKTAAKILQ  169 (211)
Q Consensus       152 ---~~~~i~~~~~~i~~~~~~  169 (211)
                         ++.|++++++.|.+.+..
T Consensus       305 ~~~~~~Gi~~L~~~L~~~l~~  325 (695)
T 2j69_A          305 ADLDGTGFPKFMDSLNTFLTR  325 (695)
T ss_dssp             CCCTTSSHHHHHHHHHHHHHH
T ss_pred             hhhhccCHHHHHHHHHHHHHH
Confidence               999999999998887654

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.76  E-value=1e-17  Score=140.50  Aligned_cols=117  Identities=16%  Similarity=0.130  Sum_probs=79.5

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCC--------------------CCCCeeeEEEEEEEEECCEEEEEEEEeCCC
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV--------------------HDLTIGVEFGARMVTIDGRPIKLQIWDTAG   64 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G   64 (211)
                      ...+|+++|++++|||||+++|+.......                    .....+.++......++.....+.||||||
T Consensus        12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG   91 (529)
T 2h5e_A           12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG   91 (529)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred             CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence            578999999999999999999996421110                    001122222222233333446789999999


Q ss_pred             ccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCC
Q 028251           65 QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH  125 (211)
Q Consensus        65 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  125 (211)
                      +..+......++..+|++|+|+|+.+..... ...++..+   ...+.|+++++||+|+..
T Consensus        92 ~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~---~~~~ipiivviNK~Dl~~  148 (529)
T 2h5e_A           92 HEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVT---RLRDTPILTFMNKLDRDI  148 (529)
T ss_dssp             STTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHH---TTTTCCEEEEEECTTSCC
T ss_pred             ChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHH---HHcCCCEEEEEcCcCCcc
Confidence            9999888889999999999999998854322 22222222   224899999999999854

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.75  E-value=6.6e-18  Score=145.90  Aligned_cols=119  Identities=18%  Similarity=0.213  Sum_probs=82.4

Q ss_pred             CCceeeEEEEcCCCCCHHHHHHHHHhCC--CCCC--------C------CCCeeeEEEEEEEEECCEEEEEEEEeCCCcc
Q 028251            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKR--FQPV--------H------DLTIGVEFGARMVTIDGRPIKLQIWDTAGQE   66 (211)
Q Consensus         3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~--~~~~--------~------~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~   66 (211)
                      .+...+|+|+|+.|+|||||+++|+...  +...        .      ....+.+.......+......+.||||||+.
T Consensus         9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~   88 (691)
T 1dar_A            9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHV   88 (691)
T ss_dssp             GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSST
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCcc
Confidence            3568899999999999999999998421  1000        0      0011222222222222224678999999999


Q ss_pred             chhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCC
Q 028251           67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH  125 (211)
Q Consensus        67 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  125 (211)
                      .+...+..++..+|++|+|+|+++.........|.. +..   .+.|+++++||+|+..
T Consensus        89 df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~  143 (691)
T 1dar_A           89 DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTG  143 (691)
T ss_dssp             TCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred             chHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence            999999999999999999999998776666555543 333   3899999999999854

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.74  E-value=5.1e-19  Score=138.92  Aligned_cols=165  Identities=16%  Similarity=0.232  Sum_probs=88.0

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhC-CCCCCCC--------CCeeeEEEEEEEEECCEEEEEEEEeCCCc-------cc
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDK-RFQPVHD--------LTIGVEFGARMVTIDGRPIKLQIWDTAGQ-------ES   67 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~l~D~~G~-------~~   67 (211)
                      +..++|+|+|++|+|||||+++|.+. .+.....        ++............++....+.+||++|.       +.
T Consensus        16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~   95 (301)
T 2qnr_A           16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC   95 (301)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence            35689999999999999999998875 3332221        11111111111222344568899999997       44


Q ss_pred             hhhchH-------HHhccc-------------cEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCC
Q 028251           68 FRSITR-------SYYRGA-------------AGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR  127 (211)
Q Consensus        68 ~~~~~~-------~~~~~~-------------d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  127 (211)
                      +..+..       .++...             ++++++.+.+.. ++..+.  ...+.... .+.|+++|+||.|+....
T Consensus        96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~--~~~l~~l~-~~~~iilV~~K~Dl~~~~  171 (301)
T 2qnr_A           96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLD--VAFMKAIH-NKVNIVPVIAKADTLTLK  171 (301)
T ss_dssp             CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHH--HHHHHHHT-TTSCEEEEECCGGGSCHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHH--HHHHHHHH-hcCCEEEEEEeCCCCCHH
Confidence            454443       444333             335555554221 122222  12233332 367999999999996543


Q ss_pred             CC--CHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHHhh
Q 028251          128 AV--SKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE  173 (211)
Q Consensus       128 ~~--~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~~~  173 (211)
                      +.  ..+++.+++...+++++++||+++ +++++|..+.+.+.+..+.
T Consensus       172 e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p~  218 (301)
T 2qnr_A          172 ERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASIPF  218 (301)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTCSE
T ss_pred             HHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCCCc
Confidence            32  235677788889999999999999 9999999999988765543

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.74  E-value=5.5e-20  Score=156.22  Aligned_cols=150  Identities=22%  Similarity=0.185  Sum_probs=80.6

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCC-----------------------------CCCCeeeEEEEEEEEECCEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-----------------------------HDLTIGVEFGARMVTIDGRPI   55 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~   55 (211)
                      ..++|+++|++++|||||+++|+.......                             .....|++.......+.....
T Consensus       176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~  255 (592)
T 3mca_A          176 PVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKK  255 (592)
T ss_dssp             CEEEEEEECCSSSTHHHHHHHHHHHHHCC---------------------------------------------------
T ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCe
Confidence            568999999999999999999964210000                             000123444444444444557


Q ss_pred             EEEEEeCCCccchhhchHHHhccccEEEEEEECCCHH---HH---HHHHHHHHHHHHhcCCCCe-EEEEEecCCCCCCCC
Q 028251           56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE---TF---NHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRA  128 (211)
Q Consensus        56 ~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~  128 (211)
                      .+.||||||++.|.......+..+|++|+|+|++++.   .+   ......+..+...   +.| ++|++||+|+.+...
T Consensus       256 ~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l---gip~iIvviNKiDl~~~~~  332 (592)
T 3mca_A          256 IYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL---GISEIVVSVNKLDLMSWSE  332 (592)
T ss_dssp             ---CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS---SCCCEEEEEECGGGGTTCH
T ss_pred             EEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc---CCCeEEEEEeccccccccH
Confidence            7899999999999998888999999999999998532   11   1111222222222   565 999999999965221


Q ss_pred             CCH----HHHHHHH-HHcCC-----cEEEEeCCCCCCHH
Q 028251          129 VSK----EEGEQFA-KENGL-----LFLEASARTAQNVE  157 (211)
Q Consensus       129 ~~~----~~~~~~~-~~~~~-----~~~~~s~~~~~~i~  157 (211)
                      ...    ++...+. ...++     +++++||++|.|+.
T Consensus       333 ~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          333 DRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             HHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             HHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence            111    2233333 33344     69999999999998

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.73  E-value=1.5e-17  Score=131.31  Aligned_cols=161  Identities=14%  Similarity=0.131  Sum_probs=95.7

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCC----CeeeEEEEE----------------------------------
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL----TIGVEFGAR----------------------------------   46 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~----~~~~~~~~~----------------------------------   46 (211)
                      ..++|+|+|.+|+|||||+|+|++..+.+....    ..+......                                  
T Consensus        23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  102 (315)
T 1jwy_B           23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEI  102 (315)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHH
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHH
Confidence            467999999999999999999999876332211    000000000                                  


Q ss_pred             -------------------EEE-ECCEEEEEEEEeCCCccc-------------hhhchHHHhccccEEEEEEECCCHH-
Q 028251           47 -------------------MVT-IDGRPIKLQIWDTAGQES-------------FRSITRSYYRGAAGALLVYDITRRE-   92 (211)
Q Consensus        47 -------------------~~~-~~~~~~~l~l~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~-   92 (211)
                                         .+. .......+.||||||...             +......++..+|++|+|+|..+.. 
T Consensus       103 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~  182 (315)
T 1jwy_B          103 IRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL  182 (315)
T ss_dssp             HHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS
T ss_pred             HHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcch
Confidence                               000 001123588999999753             4456777889999999999974322 


Q ss_pred             HHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCC------CCCHHHHHHHHHHH
Q 028251           93 TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASART------AQNVEEAFIKTAAK  166 (211)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~i~~~~~~i~~~  166 (211)
                      .......+...   ....+.|+++|+||+|+........+.........+..++++++..      +.|+.++++.+.+.
T Consensus       183 ~~~~~~~i~~~---~~~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~  259 (315)
T 1jwy_B          183 ANSDALQLAKE---VDPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILY  259 (315)
T ss_dssp             TTCSHHHHHHH---HCSSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHH
T ss_pred             hhhHHHHHHHH---hCCCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHH
Confidence            10111122222   2234789999999999976543223332211111225566666654      67888888777666


Q ss_pred             HH
Q 028251          167 IL  168 (211)
Q Consensus       167 ~~  168 (211)
                      +.
T Consensus       260 ~~  261 (315)
T 1jwy_B          260 FK  261 (315)
T ss_dssp             HH
T ss_pred             Hh
Confidence            64

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.72  E-value=1.8e-16  Score=137.17  Aligned_cols=118  Identities=17%  Similarity=0.140  Sum_probs=82.7

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCC--CCCC-----------CC---CCeeeEEEEEE--EEEC-----CEEEEEEEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKR--FQPV-----------HD---LTIGVEFGARM--VTID-----GRPIKLQIW   60 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~--~~~~-----------~~---~~~~~~~~~~~--~~~~-----~~~~~l~l~   60 (211)
                      +...+|+|+|+.++|||||+++|+...  +...           ..   ...+.+.....  +.++     +..+.+.||
T Consensus         8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li   87 (704)
T 2rdo_7            8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII   87 (704)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence            567899999999999999999997531  1110           00   01122332222  2222     233789999


Q ss_pred             eCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCC
Q 028251           61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH  125 (211)
Q Consensus        61 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  125 (211)
                      ||||+..|...+..+++.+|++|+|+|+++.........| .....   .+.|+++++||+|+..
T Consensus        88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~---~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANK---YKVPRIAFVNKMDRMG  148 (704)
T ss_pred             eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHH---cCCCEEEEEeCCCccc
Confidence            9999999998899999999999999999987554444334 33222   3799999999999854

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.72  E-value=4.2e-17  Score=140.96  Aligned_cols=117  Identities=18%  Similarity=0.181  Sum_probs=82.1

Q ss_pred             CCceeeEEEEcCCCCCHHHHHHHHHhC--CCCCCC---CC-----------CeeeEEE--EEEEEECCEEEEEEEEeCCC
Q 028251            3 YDYLFKYIIIGDTGVGKSCLLLQFTDK--RFQPVH---DL-----------TIGVEFG--ARMVTIDGRPIKLQIWDTAG   64 (211)
Q Consensus         3 ~~~~~~i~vvG~~~~GKSsli~~l~~~--~~~~~~---~~-----------~~~~~~~--~~~~~~~~~~~~l~l~D~~G   64 (211)
                      .+...+|+|+|++|+|||||+++|+..  .+....   ..           ..+.+..  ...+..+  ...+.||||||
T Consensus         7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG   84 (693)
T 2xex_A            7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE--GHRVNIIDTPG   84 (693)
T ss_dssp             STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEET--TEEEEEECCCC
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC--CeeEEEEECcC
Confidence            356789999999999999999999852  221000   00           0111221  2223333  46789999999


Q ss_pred             ccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCC
Q 028251           65 QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH  125 (211)
Q Consensus        65 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  125 (211)
                      +..+......+++.+|++|+|+|+++..+......|. .+..   .+.|+++++||+|+..
T Consensus        85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~---~~~p~ilviNK~Dl~~  141 (693)
T 2xex_A           85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR-QATT---YGVPRIVFVNKMDKLG  141 (693)
T ss_dssp             CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHHH---TTCCEEEEEECTTSTT
T ss_pred             CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHH-HHHH---cCCCEEEEEECCCccc
Confidence            9999988999999999999999999876665554443 3333   3789999999999864

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.72  E-value=6.1e-17  Score=130.87  Aligned_cols=131  Identities=15%  Similarity=0.166  Sum_probs=101.7

Q ss_pred             CeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEECCC----------HHHHHHHHHHHHHHHHh
Q 028251           38 TIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLSSWLEDARQH  107 (211)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~  107 (211)
                      |+|...  ..+.+++  +.+.+|||+|++.++..|..+++.++++|+|||+++          ..++.....|+..+...
T Consensus       204 TiGi~~--~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~  279 (402)
T 1azs_C          204 TSGIFE--TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN  279 (402)
T ss_dssp             CCSEEE--EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC
T ss_pred             eeeeEE--EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhc
Confidence            344443  3455554  779999999999999999999999999999999999          88899999999888765


Q ss_pred             c-CCCCeEEEEEecCCCCCCCC---C---------------------------CHHHHHHHH-----HH--------cCC
Q 028251          108 A-NPNMSIMLVGNKCDLAHRRA---V---------------------------SKEEGEQFA-----KE--------NGL  143 (211)
Q Consensus       108 ~-~~~~p~ivv~nK~Dl~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~  143 (211)
                      . ..+.|+++|+||+|+.+.+.   .                           ..+++..++     ..        ..+
T Consensus       280 ~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~  359 (402)
T 1azs_C          280 RWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYC  359 (402)
T ss_dssp             TTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCE
T ss_pred             ccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCccc
Confidence            3 36899999999999843221   1                           134555553     22        245


Q ss_pred             cEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Q 028251          144 LFLEASARTAQNVEEAFIKTAAKILQNIQ  172 (211)
Q Consensus       144 ~~~~~s~~~~~~i~~~~~~i~~~~~~~~~  172 (211)
                      .++++||+++.||+++|..+.+.+++...
T Consensus       360 ~~~~TSA~d~~nV~~vF~~v~~~I~~~~l  388 (402)
T 1azs_C          360 YPHFTCAVDTENIRRVFNDCRDIIQRMHL  388 (402)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEeecCcCHHHHHHHHHHHHHHHHH
Confidence            67899999999999999999888876654

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.71  E-value=9.1e-18  Score=136.73  Aligned_cols=158  Identities=16%  Similarity=0.233  Sum_probs=79.2

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCC--------CCCeeeEEEEEEEEECCEEEEEEEEeCCCccchh-------
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH--------DLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR-------   69 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~-------   69 (211)
                      ..++|+|+|++|+|||||+++|++..+....        .++.+.......+..++....+.+||++|.....       
T Consensus        30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~  109 (418)
T 2qag_C           30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ  109 (418)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred             CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence            4578999999999999999999987663221        1121211111111223334578999999976431       


Q ss_pred             h------------------chHHHhccccEEEEEEECCCH-HHHHHHH-HHHHHHHHhcCCCCeEEEEEecCCCCCCCCC
Q 028251           70 S------------------ITRSYYRGAAGALLVYDITRR-ETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRRAV  129 (211)
Q Consensus        70 ~------------------~~~~~~~~~d~~i~v~d~~~~-~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~  129 (211)
                      .                  +...++..+++.+++|+.... .++.... .|+..+.    .+.|+|+|+||+|+....++
T Consensus       110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~ev  185 (418)
T 2qag_C          110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPEEC  185 (418)
T ss_dssp             HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHHHH
Confidence            1                  112233445544444444322 2233332 4555443    37999999999998654443


Q ss_pred             CH--HHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHH
Q 028251          130 SK--EEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK  166 (211)
Q Consensus       130 ~~--~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~  166 (211)
                      ..  +.+...+..++++++++|+.++.++.++|..+.+.
T Consensus       186 ~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~  224 (418)
T 2qag_C          186 QQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR  224 (418)
T ss_dssp             HHHHHHHHHHHHHHTCCCCCCC-----------------
T ss_pred             HHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhh
Confidence            32  55667777889999999999999998877666543

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.71  E-value=1e-17  Score=136.03  Aligned_cols=85  Identities=21%  Similarity=0.210  Sum_probs=47.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEE--E-------------------EECC-EEEEEEEEeCCC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM--V-------------------TIDG-RPIKLQIWDTAG   64 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~--~-------------------~~~~-~~~~l~l~D~~G   64 (211)
                      ++|+++|.+|||||||+|+|++........+.++.+.....  +                   .+++ ..+.+.||||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            58999999999999999999987733222222222111111  1                   1232 246799999999


Q ss_pred             ccch----hhchH---HHhccccEEEEEEECCCH
Q 028251           65 QESF----RSITR---SYYRGAAGALLVYDITRR   91 (211)
Q Consensus        65 ~~~~----~~~~~---~~~~~~d~~i~v~d~~~~   91 (211)
                      ....    ..+..   ..++.+|++++|+|+.+.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            7532    22222   346899999999999874

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.70  E-value=5.4e-18  Score=133.14  Aligned_cols=133  Identities=16%  Similarity=0.119  Sum_probs=107.3

Q ss_pred             HHHHHHHhCCCC-CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHH-HHHHHH
Q 028251           21 CLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE-TFNHLS   98 (211)
Q Consensus        21 sli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~   98 (211)
                      +|+++++.+.|. ..+.+++|..+.. .+..++   .+.+||+  ++++..++..+++++|++|+|||++++. ++..+.
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~~-~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVEY-TPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEEE-ECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEEE-EEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence            577888888887 7888898866543 222222   6789999  8999999999999999999999999987 688888


Q ss_pred             HHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC--CcEEEEeCCCCCCHHHHHHHHH
Q 028251           99 SWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG--LLFLEASARTAQNVEEAFIKTA  164 (211)
Q Consensus        99 ~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~i~~~~~~i~  164 (211)
                      .|+..+..   .+.|+++|+||+|+.+...  .++...++...+  ++++++||++|.|++++|+.+.
T Consensus       106 ~~l~~~~~---~~~piilv~NK~DL~~~~~--v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~  168 (301)
T 1u0l_A          106 KFLVLAEK---NELETVMVINKMDLYDEDD--LRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK  168 (301)
T ss_dssp             HHHHHHHH---TTCEEEEEECCGGGCCHHH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred             HHHHHHHH---CCCCEEEEEeHHHcCCchh--HHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence            99887755   3799999999999965432  244666666666  8999999999999999998764

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.66  E-value=2.9e-15  Score=119.59  Aligned_cols=145  Identities=16%  Similarity=0.145  Sum_probs=90.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCE---------------EEEEEEEeCCCccchh--
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGR---------------PIKLQIWDTAGQESFR--   69 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~l~l~D~~G~~~~~--   69 (211)
                      ++|+++|.+|+|||||+|+|++..+.....+.++.......+.+++.               ...+.+||+||.....  
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~   82 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK   82 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence            68999999999999999999987743322222222222223344442               2468999999987643  


Q ss_pred             --h---chHHHhccccEEEEEEECCCH----------HHHHHHHHHHHH-------------------------------
Q 028251           70 --S---ITRSYYRGAAGALLVYDITRR----------ETFNHLSSWLED-------------------------------  103 (211)
Q Consensus        70 --~---~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~-------------------------------  103 (211)
                        .   .....++.+|++++|+|+.+.          +.+..+..+..+                               
T Consensus        83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~~  162 (363)
T 1jal_A           83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFEL  162 (363)
T ss_dssp             HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHHH
Confidence              1   233457899999999999752          122222111111                               


Q ss_pred             ---------HH-------------------Hh-cCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCC
Q 028251          104 ---------AR-------------------QH-ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASAR  151 (211)
Q Consensus       104 ---------~~-------------------~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~  151 (211)
                               +.                   .+ ....+|+++++|+.|.........+.+..++...+.+++++||+
T Consensus       163 ~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~  239 (363)
T 1jal_A          163 SVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAA  239 (363)
T ss_dssp             HHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHH
T ss_pred             HHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechH
Confidence                     10                   01 11359999999999964322223456677887889999999965

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.65  E-value=9.5e-17  Score=120.37  Aligned_cols=155  Identities=15%  Similarity=0.099  Sum_probs=94.2

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEE------------EEEEEECC------------------EE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFG------------ARMVTIDG------------------RP   54 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~~------------------~~   54 (211)
                      ...+|+++|++|+|||||+++|............+..+..            .....++.                  ..
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            4578999999999999999999865321110000000000            00011111                  23


Q ss_pred             EEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHH
Q 028251           55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEG  134 (211)
Q Consensus        55 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~  134 (211)
                      ..+.+|||+|+.....   .+....+.+|+|+|+.+....  ...+.   ...   +.|+++++||+|+.+......++.
T Consensus       109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~~~~---~~~---~~~~iiv~NK~Dl~~~~~~~~~~~  177 (221)
T 2wsm_A          109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VEKHP---EIF---RVADLIVINKVALAEAVGADVEKM  177 (221)
T ss_dssp             CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HHHCH---HHH---HTCSEEEEECGGGHHHHTCCHHHH
T ss_pred             CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hhhhh---hhh---hcCCEEEEecccCCcchhhHHHHH
Confidence            4678999998511100   111246789999998764321  11111   111   578999999999854322345666


Q ss_pred             HHHHHHc--CCcEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 028251          135 EQFAKEN--GLLFLEASARTAQNVEEAFIKTAAKILQN  170 (211)
Q Consensus       135 ~~~~~~~--~~~~~~~s~~~~~~i~~~~~~i~~~~~~~  170 (211)
                      ...+...  +.+++++|+++|.|+++++++|.+.+...
T Consensus       178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~  215 (221)
T 2wsm_A          178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH  215 (221)
T ss_dssp             HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred             HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence            5655553  46899999999999999999998877543

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.64  E-value=5e-17  Score=130.38  Aligned_cols=158  Identities=17%  Similarity=0.138  Sum_probs=94.0

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCC----eeeEE-------------------------------------
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT----IGVEF-------------------------------------   43 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~----~~~~~-------------------------------------   43 (211)
                      ..++|+|+|.+++|||||+|+|++..+.+.....    .+...                                     
T Consensus        30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~  109 (353)
T 2x2e_A           30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  109 (353)
T ss_dssp             CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence            4579999999999999999999998875322111    11000                                     


Q ss_pred             --------EEEEEEECC-EEEEEEEEeCCCcc-------------chhhchHHHhcccc-EEEEEEECCCHHHHHHHHHH
Q 028251           44 --------GARMVTIDG-RPIKLQIWDTAGQE-------------SFRSITRSYYRGAA-GALLVYDITRRETFNHLSSW  100 (211)
Q Consensus        44 --------~~~~~~~~~-~~~~l~l~D~~G~~-------------~~~~~~~~~~~~~d-~~i~v~d~~~~~~~~~~~~~  100 (211)
                              ....+.+.+ ....+.||||||..             .+..+...++...+ ++++|++++....-.   .+
T Consensus       110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~---~~  186 (353)
T 2x2e_A          110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANS---DA  186 (353)
T ss_dssp             TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGC---HH
T ss_pred             ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchh---HH
Confidence                    000011110 12468899999953             33445666776666 455566665432211   22


Q ss_pred             HHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHH--HHHcC-CcEEEEeCCCCCCHHHHHHHHHH
Q 028251          101 LEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF--AKENG-LLFLEASARTAQNVEEAFIKTAA  165 (211)
Q Consensus       101 ~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~--~~~~~-~~~~~~s~~~~~~i~~~~~~i~~  165 (211)
                      ...+......+.|+++|+||+|+.+......+..+..  ....+ .+++.+||+++.|++++++.+.+
T Consensus       187 ~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          187 LKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            2233333345899999999999975433222221110  00112 24678999999999999998876

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.62  E-value=1.3e-15  Score=134.20  Aligned_cols=118  Identities=20%  Similarity=0.177  Sum_probs=85.3

Q ss_pred             CCceeeEEEEcCCCCCHHHHHHHHHhCCCCC----------------CCCC--CeeeEEEEEEEE------------ECC
Q 028251            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQP----------------VHDL--TIGVEFGARMVT------------IDG   52 (211)
Q Consensus         3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~----------------~~~~--~~~~~~~~~~~~------------~~~   52 (211)
                      .+...+|+|+|+.++|||||+++|+......                +...  ++........+.            .++
T Consensus        16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~   95 (842)
T 1n0u_A           16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG   95 (842)
T ss_dssp             GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence            4567899999999999999999998641100                0011  111111111122            234


Q ss_pred             EEEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCC
Q 028251           53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA  124 (211)
Q Consensus        53 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  124 (211)
                      ..+.++||||||+..|...+..+++.+|++|+|+|+++..+++....|.....    .+.|+++++||+|+.
T Consensus        96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~ilviNK~D~~  163 (842)
T 1n0u_A           96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRA  163 (842)
T ss_dssp             SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHH
T ss_pred             CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH----cCCCeEEEEECCCcc
Confidence            47889999999999999999999999999999999999877766655543332    378999999999985

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.60  E-value=7.5e-15  Score=123.69  Aligned_cols=117  Identities=18%  Similarity=0.169  Sum_probs=81.6

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCC------------------CC--CCCCCeeeEEEEEEEEECCEEEEEEEEeCCC
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRF------------------QP--VHDLTIGVEFGARMVTIDGRPIKLQIWDTAG   64 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~------------------~~--~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G   64 (211)
                      ..=+|+|+|+.++|||||..+|+....                  ..  ....-.|+++....+.+......++|+||||
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG  109 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG  109 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred             ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence            456899999999999999999963211                  00  0111123333333344444456789999999


Q ss_pred             ccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCC
Q 028251           65 QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH  125 (211)
Q Consensus        65 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  125 (211)
                      +..|.......++-+|++|+|+|+.+.-..+...-| .....+   +.|.++++||+|...
T Consensus       110 HvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~~---~lp~i~fINK~Dr~~  166 (548)
T 3vqt_A          110 HQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRMR---ATPVMTFVNKMDREA  166 (548)
T ss_dssp             GGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHHT---TCCEEEEEECTTSCC
T ss_pred             cHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHHh---CCceEEEEecccchh
Confidence            999999999999999999999999986544444444 333333   899999999999753

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.58  E-value=1.7e-15  Score=127.64  Aligned_cols=120  Identities=18%  Similarity=0.195  Sum_probs=80.2

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCC---CCCCCCeeeEEEEEE-----EEECCE---------------E------
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQ---PVHDLTIGVEFGARM-----VTIDGR---------------P------   54 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~-----~~~~~~---------------~------   54 (211)
                      +..++|+|+|.+|+|||||+|+|++..+.   ....+++........     +..+..               .      
T Consensus        63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~  142 (550)
T 2qpt_A           63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR  142 (550)
T ss_dssp             SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence            45689999999999999999999998864   222222211000000     000000               0      


Q ss_pred             -----------EEEEEEeCCCccc-----------hhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Q 028251           55 -----------IKLQIWDTAGQES-----------FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNM  112 (211)
Q Consensus        55 -----------~~l~l~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  112 (211)
                                 ..+.||||||...           +......++..+|++|+|+|+++.........|+..+..   .+.
T Consensus       143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~  219 (550)
T 2qpt_A          143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---HED  219 (550)
T ss_dssp             EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---CGG
T ss_pred             ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---cCC
Confidence                       2578999999764           445667788999999999999875433444555544432   368


Q ss_pred             eEEEEEecCCCCCC
Q 028251          113 SIMLVGNKCDLAHR  126 (211)
Q Consensus       113 p~ivv~nK~Dl~~~  126 (211)
                      |+++|+||+|+...
T Consensus       220 pvilVlNK~Dl~~~  233 (550)
T 2qpt_A          220 KIRVVLNKADMVET  233 (550)
T ss_dssp             GEEEEEECGGGSCH
T ss_pred             CEEEEEECCCccCH
Confidence            99999999998653

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.58  E-value=2.4e-17  Score=124.01  Aligned_cols=154  Identities=18%  Similarity=0.178  Sum_probs=92.6

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEE------------EEEEEEC-CE------------------
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFG------------ARMVTID-GR------------------   53 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~------------------   53 (211)
                      ..++|+|+|++|||||||+++|+...+.....++++.++.            ...+.++ +.                  
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~  116 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL  116 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence            4689999999999999999999977554433333333322            1222222 10                  


Q ss_pred             -EEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHH
Q 028251           54 -PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE  132 (211)
Q Consensus        54 -~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~  132 (211)
                       ...+.++|++|.-...   ..+-...+..+.++|........  ......      .+.|.++++||+|+.+......+
T Consensus       117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~--~~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~  185 (226)
T 2hf9_A          117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTI--EKHPGI------MKTADLIVINKIDLADAVGADIK  185 (226)
T ss_dssp             GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTT--TTCHHH------HTTCSEEEEECGGGHHHHTCCHH
T ss_pred             CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhH--hhhhhH------hhcCCEEEEeccccCchhHHHHH
Confidence             1134556666531110   01112334566677753211100  000011      15788999999998654334566


Q ss_pred             HHHHHHHHc--CCcEEEEeCCCCCCHHHHHHHHHHHHHH
Q 028251          133 EGEQFAKEN--GLLFLEASARTAQNVEEAFIKTAAKILQ  169 (211)
Q Consensus       133 ~~~~~~~~~--~~~~~~~s~~~~~~i~~~~~~i~~~~~~  169 (211)
                      +....+...  +.+++++||++|.|++++|+.|.+.+..
T Consensus       186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence            666666653  5789999999999999999999887643

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.58  E-value=7.2e-15  Score=117.90  Aligned_cols=155  Identities=17%  Similarity=0.124  Sum_probs=92.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECC-------------------EEEEEEEEeCCCccc
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDG-------------------RPIKLQIWDTAGQES   67 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~l~l~D~~G~~~   67 (211)
                      ++|+++|.+|+|||||+|+|++........+..+.........+++                   ....+.+||+||...
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~   81 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK   81 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence            6899999999999999999997643222112111111111122221                   235689999999765


Q ss_pred             hh----hc---hHHHhccccEEEEEEECCCH----------HHHHHHHHHHHH---------------------------
Q 028251           68 FR----SI---TRSYYRGAAGALLVYDITRR----------ETFNHLSSWLED---------------------------  103 (211)
Q Consensus        68 ~~----~~---~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~---------------------------  103 (211)
                      ..    .+   ....++.+|++++|+|+.+.          +.+..+..+..+                           
T Consensus        82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~  161 (368)
T 2dby_A           82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERL  161 (368)
T ss_dssp             CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred             cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHH
Confidence            42    12   33457899999999999751          111111110000                           


Q ss_pred             ------------HHH-------------------hc-CCCCeEEEEEecCCCC--CC-CCCCHHHHHHHHHHcCCcEEEE
Q 028251          104 ------------ARQ-------------------HA-NPNMSIMLVGNKCDLA--HR-RAVSKEEGEQFAKENGLLFLEA  148 (211)
Q Consensus       104 ------------~~~-------------------~~-~~~~p~ivv~nK~Dl~--~~-~~~~~~~~~~~~~~~~~~~~~~  148 (211)
                                  +..                   +. ...+|+++++||.|..  +. .....+.++.++...+.+++++
T Consensus       162 ~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~i  241 (368)
T 2dby_A          162 PLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVV  241 (368)
T ss_dssp             HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEe
Confidence                        000                   00 1248999999999842  21 1233566777888888999999


Q ss_pred             eCCCCCCHHHHHH
Q 028251          149 SARTAQNVEEAFI  161 (211)
Q Consensus       149 s~~~~~~i~~~~~  161 (211)
                      ||+....+.++.+
T Consensus       242 SAk~E~el~eL~~  254 (368)
T 2dby_A          242 SARLEAELAELSG  254 (368)
T ss_dssp             CHHHHHHHHTSCH
T ss_pred             echhHHHHHHhch
Confidence            9987655554433

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.58  E-value=8.4e-16  Score=123.31  Aligned_cols=105  Identities=12%  Similarity=0.052  Sum_probs=69.3

Q ss_pred             EEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCC--HH
Q 028251           55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS--KE  132 (211)
Q Consensus        55 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~  132 (211)
                      +.+.||||||...   .....+..+|++|+|+|....+....+..        ...+.|+++|+||+|+.......  .+
T Consensus       172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~--------~~~~~p~ivVlNK~Dl~~~~~~~~~~~  240 (355)
T 3p32_A          172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK--------GVLELADIVVVNKADGEHHKEARLAAR  240 (355)
T ss_dssp             CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT--------TSGGGCSEEEEECCCGGGHHHHHHHHH
T ss_pred             CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH--------hHhhcCCEEEEECCCCcChhHHHHHHH
Confidence            5688999999532   23345688999999999876543222111        01246899999999985421111  11


Q ss_pred             HHHHHHHHc-------CCcEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 028251          133 EGEQFAKEN-------GLLFLEASARTAQNVEEAFIKTAAKILQN  170 (211)
Q Consensus       133 ~~~~~~~~~-------~~~~~~~s~~~~~~i~~~~~~i~~~~~~~  170 (211)
                      +........       +.+++++||++|.|++++++.|.+.+...
T Consensus       241 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~~  285 (355)
T 3p32_A          241 ELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQVL  285 (355)
T ss_dssp             HHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence            111111111       46899999999999999999999887653

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.55  E-value=1.6e-13  Score=110.10  Aligned_cols=152  Identities=14%  Similarity=0.079  Sum_probs=98.6

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccch-------hhchHHHhc
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF-------RSITRSYYR   77 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~-------~~~~~~~~~   77 (211)
                      ...+|+++|.|+||||||+|+|++........+.++.+.....+.+++..  +.++|+||....       .......++
T Consensus        71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~--i~l~D~pGl~~~a~~~~~~g~~~l~~i~  148 (376)
T 4a9a_A           71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAK--IQMLDLPGIIDGAKDGRGRGKQVIAVAR  148 (376)
T ss_dssp             SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEE--EEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcE--EEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence            34689999999999999999999887655555666777767777777754  679999995321       122334568


Q ss_pred             cccEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEecCCCCC--------CCCCCHHHHHHHHHHcCCcEEE
Q 028251           78 GAAGALLVYDITRRETFNHLSSWLEDARQHA--NPNMSIMLVGNKCDLAH--------RRAVSKEEGEQFAKENGLLFLE  147 (211)
Q Consensus        78 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~--------~~~~~~~~~~~~~~~~~~~~~~  147 (211)
                      .+|++++|+|+.++..  .......++....  ..+.|.++++||.|...        ......++...+.....+..-+
T Consensus       149 ~ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kp  226 (376)
T 4a9a_A          149 TCNLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAE  226 (376)
T ss_dssp             HCSEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEE
T ss_pred             hcCccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCC
Confidence            8999999999998743  2222222332221  14678899999999632        1234556666666655543222


Q ss_pred             EeCCCCCCHHHHH
Q 028251          148 ASARTAQNVEEAF  160 (211)
Q Consensus       148 ~s~~~~~~i~~~~  160 (211)
                      +--..+...+++.
T Consensus       227 v~~~~nv~eddl~  239 (376)
T 4a9a_A          227 IAFRCDATVDDLI  239 (376)
T ss_dssp             EEECSCCCHHHHH
T ss_pred             eeecccCCHHHHH
Confidence            2223344445543

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.52  E-value=5.3e-15  Score=118.30  Aligned_cols=103  Identities=11%  Similarity=0.034  Sum_probs=62.6

Q ss_pred             EEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHH
Q 028251           55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEG  134 (211)
Q Consensus        55 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~  134 (211)
                      +.+.|+||+|....   ...+...+|++++|+|+.++.....+..   .+     ...|.++++||+|+.+.... ....
T Consensus       167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~-~~~~  234 (349)
T 2www_A          167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPA-RRIQ  234 (349)
T ss_dssp             CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHH-HHHH
T ss_pred             CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhH-HHHH
Confidence            45789999995321   2445678999999999987543221111   11     14688999999998531110 0111


Q ss_pred             HHHHH----------HcCCcEEEEeCCCCCCHHHHHHHHHHHHHH
Q 028251          135 EQFAK----------ENGLLFLEASARTAQNVEEAFIKTAAKILQ  169 (211)
Q Consensus       135 ~~~~~----------~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~  169 (211)
                      ..+..          ....+++.+|++++.|+++++++|.+.+..
T Consensus       235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~  279 (349)
T 2www_A          235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL  279 (349)
T ss_dssp             HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            12211          124568999999999999999999887644

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.50  E-value=5.5e-15  Score=126.77  Aligned_cols=115  Identities=15%  Similarity=0.160  Sum_probs=82.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCC--CCC---CC-----------CCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRF--QPV---HD-----------LTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS   70 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~--~~~---~~-----------~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~   70 (211)
                      -+|+|+|+.++|||||..+|+....  ...   ..           .-.|+++....+.+......++|.||||+..|..
T Consensus         3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~   82 (638)
T 3j25_A            3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA   82 (638)
T ss_dssp             CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence            4799999999999999999973211  100   00           0114444444455555667789999999999999


Q ss_pred             chHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCC
Q 028251           71 ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH  125 (211)
Q Consensus        71 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  125 (211)
                      .....++-+|++|+|+|+.+.-..+...-| .....+   +.|.++++||+|...
T Consensus        83 Ev~raL~~~DgavlVVDa~~GV~~qT~~v~-~~a~~~---~lp~i~~INKmDr~~  133 (638)
T 3j25_A           83 EVYRSLSVLDGAILLISAKDGVQAQTRILF-HALRKM---GIPTIFFINKIDQNG  133 (638)
T ss_dssp             HHHHHHTTCSEEECCEESSCTTCSHHHHHH-HHHHHH---TCSCEECCEECCSSS
T ss_pred             HHHHHHHHhCEEEEEEeCCCCCcHHHHHHH-HHHHHc---CCCeEEEEecccccc
Confidence            999999999999999999886443333333 333443   789999999999743

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.48  E-value=2.7e-13  Score=104.04  Aligned_cols=109  Identities=15%  Similarity=0.050  Sum_probs=66.9

Q ss_pred             EEEEEEeCCCccchhhchH------HHhccccEEEEEEECCCH---HHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCC
Q 028251           55 IKLQIWDTAGQESFRSITR------SYYRGAAGALLVYDITRR---ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH  125 (211)
Q Consensus        55 ~~l~l~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  125 (211)
                      +.+.||||||.........      ..+.. +++|+++|+...   ..+.....+.....  ...+.|+++|+||+|+..
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~--~~~~~p~~iv~NK~D~~~  185 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLID--LRLGATTIPALNKVDLLS  185 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHH--HHHTSCEEEEECCGGGCC
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHh--cccCCCeEEEEecccccc
Confidence            4688999999876543321      23455 888889887542   22222111111111  112689999999999864


Q ss_pred             CCCCCHHHHHHH----------------------------HHHc--CCcEEEEeCCCCCCHHHHHHHHHHHHH
Q 028251          126 RRAVSKEEGEQF----------------------------AKEN--GLLFLEASARTAQNVEEAFIKTAAKIL  168 (211)
Q Consensus       126 ~~~~~~~~~~~~----------------------------~~~~--~~~~~~~s~~~~~~i~~~~~~i~~~~~  168 (211)
                      ....  ++...+                            +...  ..+++++||+++.|+++++++|.+.+.
T Consensus       186 ~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~  256 (262)
T 1yrb_A          186 EEEK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC  256 (262)
T ss_dssp             HHHH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cccH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence            3211  111111                            1232  247999999999999999999887763

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.47  E-value=9.3e-14  Score=120.03  Aligned_cols=158  Identities=15%  Similarity=0.141  Sum_probs=95.9

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeE---E--------------------------------------
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVE---F--------------------------------------   43 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~---~--------------------------------------   43 (211)
                      ..++|+|+|.+++|||||+|+|++..+.+.....++..   .                                      
T Consensus        50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~  129 (772)
T 3zvr_A           50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  129 (772)
T ss_dssp             CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence            46799999999999999999999987743322111100   0                                      


Q ss_pred             --------EEEEEE--ECCEEEEEEEEeCCCccc-------------hhhchHHHh-ccccEEEEEEECCCHHHHHHHHH
Q 028251           44 --------GARMVT--IDGRPIKLQIWDTAGQES-------------FRSITRSYY-RGAAGALLVYDITRRETFNHLSS   99 (211)
Q Consensus        44 --------~~~~~~--~~~~~~~l~l~D~~G~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~~~~~~~~   99 (211)
                              ....+.  ..+ ...+.|+||||...             .......++ ..+|++++|+|+++.........
T Consensus       130 g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~  208 (772)
T 3zvr_A          130 GTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  208 (772)
T ss_dssp             CSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred             CCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence                    000011  111 11477999999543             222334444 57899999999987432222212


Q ss_pred             HHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHH--HcC-CcEEEEeCCCCCCHHHHHHHHHHH
Q 028251          100 WLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK--ENG-LLFLEASARTAQNVEEAFIKTAAK  166 (211)
Q Consensus       100 ~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~--~~~-~~~~~~s~~~~~~i~~~~~~i~~~  166 (211)
                      +...   ....+.|+++|+||+|+................  ..+ .+++.+||++|.|++++++.+.+.
T Consensus       209 ll~~---L~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          209 IAKE---VDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             HHHH---HCTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             HHHH---HHhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            2222   233478999999999997654333221110000  012 247889999999999999888764

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.45  E-value=1.8e-14  Score=114.96  Aligned_cols=103  Identities=14%  Similarity=0.037  Sum_probs=64.5

Q ss_pred             EEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCC--HH
Q 028251           55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS--KE  132 (211)
Q Consensus        55 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~  132 (211)
                      +.+.||||||......   .....+|++++|+|+.....+..+..   ..     .+.|.++|+||+|+.......  .+
T Consensus       149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~  217 (341)
T 2p67_A          149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNHTNVAIARH  217 (341)
T ss_dssp             CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCHHHHHHHHH
T ss_pred             CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCChHHHHHHHH
Confidence            4688999999654433   24689999999999976533211110   00     146789999999986421111  01


Q ss_pred             HHHHHHHHc-------CCcEEEEeCCCCCCHHHHHHHHHHHHH
Q 028251          133 EGEQFAKEN-------GLLFLEASARTAQNVEEAFIKTAAKIL  168 (211)
Q Consensus       133 ~~~~~~~~~-------~~~~~~~s~~~~~~i~~~~~~i~~~~~  168 (211)
                      +........       ..+++++||++|.|++++++.|.+.+.
T Consensus       218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            122211221       346899999999999999999988765

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.43  E-value=3.7e-12  Score=110.60  Aligned_cols=117  Identities=17%  Similarity=0.169  Sum_probs=79.9

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCC--------CCC--------CCCCCeeeEEEEEEEEE--C-----CEEEEEEEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKR--------FQP--------VHDLTIGVEFGARMVTI--D-----GRPIKLQIW   60 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~--------~~~--------~~~~~~~~~~~~~~~~~--~-----~~~~~l~l~   60 (211)
                      ++.=+|+|+|+.++|||||..+|+...        ...        ....-.|+++....+.+  .     ...+.++|+
T Consensus        11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI   90 (709)
T 4fn5_A           11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI   90 (709)
T ss_dssp             GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred             HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence            355689999999999999999996221        000        00111233333333333  2     235789999


Q ss_pred             eCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCC
Q 028251           61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA  124 (211)
Q Consensus        61 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  124 (211)
                      ||||+..|.......++-+|++|+|+|+...-..+...-|.+... .   +.|.++++||+|..
T Consensus        91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~-~---~lp~i~~iNKiDr~  150 (709)
T 4fn5_A           91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANK-Y---GVPRIVYVNKMDRQ  150 (709)
T ss_dssp             CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH-H---TCCEEEEEECSSST
T ss_pred             eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHH-c---CCCeEEEEcccccc
Confidence            999999999999999999999999999988654444444444333 3   89999999999974

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.39  E-value=6.9e-13  Score=104.03  Aligned_cols=96  Identities=19%  Similarity=0.143  Sum_probs=78.3

Q ss_pred             ccchhhchHHHhccccEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCC-HHHHHHHHHHcC
Q 028251           65 QESFRSITRSYYRGAAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS-KEEGEQFAKENG  142 (211)
Q Consensus        65 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~  142 (211)
                      ++++..+...++.++|++++|+|++++. ++..+..|+..+..   .+.|+++|+||+|+.+..... .++...++...+
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g  142 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG  142 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence            6777778888999999999999999986 78888888887655   389999999999996533211 344556666778


Q ss_pred             CcEEEEeCCCCCCHHHHHHHH
Q 028251          143 LLFLEASARTAQNVEEAFIKT  163 (211)
Q Consensus       143 ~~~~~~s~~~~~~i~~~~~~i  163 (211)
                      ++++++||+++.|++++++.+
T Consensus       143 ~~~~~~SA~~g~gi~~L~~~l  163 (302)
T 2yv5_A          143 YDVLKVSAKTGEGIDELVDYL  163 (302)
T ss_dssp             CEEEECCTTTCTTHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHhhc
Confidence            999999999999999998765

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.36  E-value=2.7e-12  Score=102.13  Aligned_cols=104  Identities=8%  Similarity=0.035  Sum_probs=63.1

Q ss_pred             EEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHH
Q 028251           54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE  133 (211)
Q Consensus        54 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~  133 (211)
                      ...+.|+||||.....   ......+|.+++|+|....+....+...   +.     ..|.++++||+|+..........
T Consensus       147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~-----~~~~ivvlNK~Dl~~~~~~s~~~  215 (337)
T 2qm8_A          147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---IF-----ELADMIAVNKADDGDGERRASAA  215 (337)
T ss_dssp             TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---HH-----HHCSEEEEECCSTTCCHHHHHHH
T ss_pred             CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh-----ccccEEEEEchhccCchhHHHHH
Confidence            3467899999964322   2345789999999998654321111111   11     23557778999974322211112


Q ss_pred             HHHHHHH----c------CCcEEEEeCCCCCCHHHHHHHHHHHHH
Q 028251          134 GEQFAKE----N------GLLFLEASARTAQNVEEAFIKTAAKIL  168 (211)
Q Consensus       134 ~~~~~~~----~------~~~~~~~s~~~~~~i~~~~~~i~~~~~  168 (211)
                      ...+...    .      ..+++.+|++++.|++++++.|.+...
T Consensus       216 ~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          216 ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            2223221    1      356899999999999999999888654

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.36  E-value=2.2e-11  Score=98.36  Aligned_cols=86  Identities=21%  Similarity=0.219  Sum_probs=61.2

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCC-CCCCCCCeeeEEEEEEEEECCE---------------EEEEEEEeCCCccc-
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMVTIDGR---------------PIKLQIWDTAGQES-   67 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~l~l~D~~G~~~-   67 (211)
                      ...+++++|++|+|||||+|+|++... .....++++.......+.+++.               ...+.+||+||... 
T Consensus        19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~   98 (392)
T 1ni3_A           19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   98 (392)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence            346899999999999999999999776 4444444444444445555541               13578999999432 


Q ss_pred             ------hhhchHHHhccccEEEEEEECCC
Q 028251           68 ------FRSITRSYYRGAAGALLVYDITR   90 (211)
Q Consensus        68 ------~~~~~~~~~~~~d~~i~v~d~~~   90 (211)
                            ........++.+|++++|+|+.+
T Consensus        99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                  23345556789999999999863

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.33  E-value=1.3e-12  Score=105.33  Aligned_cols=88  Identities=18%  Similarity=0.132  Sum_probs=52.2

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCE---------------EEEEEEEeCCCccchh
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGR---------------PIKLQIWDTAGQESFR   69 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~l~l~D~~G~~~~~   69 (211)
                      ..++|+++|.+|+|||||+|+|++........+.++.......+.+++.               ...+.+||+||.....
T Consensus        21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a  100 (396)
T 2ohf_A           21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA  100 (396)
T ss_dssp             SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence            4578999999999999999999988764444444444444444555432               2358999999977544


Q ss_pred             h-------chHHHhccccEEEEEEECCCHH
Q 028251           70 S-------ITRSYYRGAAGALLVYDITRRE   92 (211)
Q Consensus        70 ~-------~~~~~~~~~d~~i~v~d~~~~~   92 (211)
                      .       ....+++.+|++++|+|+.+..
T Consensus       101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~  130 (396)
T 2ohf_A          101 HNGQGLGNAFLSHISACDGIFHLTRAFEDD  130 (396)
T ss_dssp             ------CCHHHHHHHTSSSEEEEEEC----
T ss_pred             chhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence            3       4567789999999999987643

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.27  E-value=5.4e-12  Score=92.39  Aligned_cols=103  Identities=6%  Similarity=-0.040  Sum_probs=68.2

Q ss_pred             CCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHH----HHhc-CCCCeEEEEEecC-CCCCCCCCCHHHHHH
Q 028251           63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA----RQHA-NPNMSIMLVGNKC-DLAHRRAVSKEEGEQ  136 (211)
Q Consensus        63 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~----~~~~-~~~~p~ivv~nK~-Dl~~~~~~~~~~~~~  136 (211)
                      +|+...+.+|..|+.++|++|||+|.+|.+.++ ....+..+    .... ..+.|++|++||. |++.  .++..++.+
T Consensus       110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~--Ams~~EI~e  186 (227)
T 3l82_B          110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAH  186 (227)
T ss_dssp             -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC--BCCHHHHHH
T ss_pred             CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC--CCCHHHHHH
Confidence            378899999999999999999999999975433 22222222    1211 2588999999995 6743  455555544


Q ss_pred             HHHH----cCCcEEEEeCCCCCCHHHHHHHHHHHHH
Q 028251          137 FAKE----NGLLFLEASARTAQNVEEAFIKTAAKIL  168 (211)
Q Consensus       137 ~~~~----~~~~~~~~s~~~~~~i~~~~~~i~~~~~  168 (211)
                      ....    ....+..|||.+|+|+.+.++||.+.+.
T Consensus       187 ~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~  222 (227)
T 3l82_B          187 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE  222 (227)
T ss_dssp             HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred             HcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence            3222    3445899999999999999999987653

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.15  E-value=1.3e-10  Score=89.20  Aligned_cols=105  Identities=7%  Similarity=-0.030  Sum_probs=73.0

Q ss_pred             CCCccchhhchHHHhccccEEEEEEECCCHHHHH---HHHHHHHHHHHhc-CCCCeEEEEEec-CCCCCCCCCCHHHHHH
Q 028251           62 TAGQESFRSITRSYYRGAAGALLVYDITRRETFN---HLSSWLEDARQHA-NPNMSIMLVGNK-CDLAHRRAVSKEEGEQ  136 (211)
Q Consensus        62 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~---~~~~~~~~~~~~~-~~~~p~ivv~nK-~Dl~~~~~~~~~~~~~  136 (211)
                      .+|+...+.+|..|+.++|++|||+|++|.+.++   .+..+...+.... ..+.|++|++|| .|++.  .++..++.+
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~e  271 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAH  271 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHHH
Confidence            3578899999999999999999999999976433   1221112222221 258999999997 57754  355555544


Q ss_pred             HHHH----cCCcEEEEeCCCCCCHHHHHHHHHHHHH
Q 028251          137 FAKE----NGLLFLEASARTAQNVEEAFIKTAAKIL  168 (211)
Q Consensus       137 ~~~~----~~~~~~~~s~~~~~~i~~~~~~i~~~~~  168 (211)
                      ....    ....+..+||.+|+|+.+.++||.+.+.
T Consensus       272 ~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~  307 (312)
T 3l2o_B          272 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE  307 (312)
T ss_dssp             HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred             HcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence            3222    2345899999999999999999988763

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.05  E-value=7.5e-10  Score=89.03  Aligned_cols=96  Identities=26%  Similarity=0.298  Sum_probs=73.3

Q ss_pred             CccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHH----HHHH
Q 028251           64 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGE----QFAK  139 (211)
Q Consensus        64 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~----~~~~  139 (211)
                      ..+.|.+....+++..|++++|+|+.++.     ..|...+.+... +.|+++|+||+|+.+.. ...+...    ..+.
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~  127 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-NNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAK  127 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-SSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-CCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHH
Confidence            46788888999999999999999999864     355555555543 78999999999996533 2333333    3355


Q ss_pred             HcCC---cEEEEeCCCCCCHHHHHHHHHHH
Q 028251          140 ENGL---LFLEASARTAQNVEEAFIKTAAK  166 (211)
Q Consensus       140 ~~~~---~~~~~s~~~~~~i~~~~~~i~~~  166 (211)
                      ..++   .++.+||++|.|++++++.|.+.
T Consensus       128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~  157 (368)
T 3h2y_A          128 QLGLKPEDVFLISAAKGQGIAELADAIEYY  157 (368)
T ss_dssp             HTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence            6677   79999999999999999888664

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.96  E-value=4.6e-11  Score=96.17  Aligned_cols=139  Identities=16%  Similarity=0.152  Sum_probs=80.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhC-----CCC-CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh--------ch
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDK-----RFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS--------IT   72 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~--------~~   72 (211)
                      .+|+++|.+|+|||||+|+|++.     ... ....+  +.+.....+.++..   +.++||||......        ..
T Consensus       163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~--gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l  237 (369)
T 3ec1_A          163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFP--GTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDL  237 (369)
T ss_dssp             SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECT--TSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTH
T ss_pred             CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCC--CeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHH
Confidence            57999999999999999999976     221 11112  33333334444432   67999999543221        12


Q ss_pred             HHHh--ccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeC
Q 028251           73 RSYY--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASA  150 (211)
Q Consensus        73 ~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~  150 (211)
                      ..++  ...|.++++++......+..+.    .+......+.|+++++||.|....... ....+.+.+..+..+.+.++
T Consensus       238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~----~l~~l~~~~~~~~~v~~k~d~~~~~~~-~~~~~~~~~~~g~~l~p~~~  312 (369)
T 3ec1_A          238 KIITPKREIHPRVYQLNEGQTLFFGGLA----RLDYIKGGRRSFVCYMANELTVHRTKL-EKADSLYANQLGELLSPPSK  312 (369)
T ss_dssp             HHHSCSSCCCCEEEEECTTEEEEETTTE----EEEEEESSSEEEEEEECTTSCEEEEEG-GGHHHHHHHHBTTTBCSSCG
T ss_pred             HHHhcccccCceEEEEcCCceEEECCEE----EEEEccCCCceEEEEecCCcccccccH-HHHHHHHHHhcCCccCCCCc
Confidence            2222  6788999999984321101110    022223347899999999998653322 23334444556666666655


Q ss_pred             CCCCC
Q 028251          151 RTAQN  155 (211)
Q Consensus       151 ~~~~~  155 (211)
                      .+..+
T Consensus       313 ~~~~~  317 (369)
T 3ec1_A          313 RYAAE  317 (369)
T ss_dssp             GGTTT
T ss_pred             hhhhh
Confidence            54433

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.95  E-value=5.9e-09  Score=84.82  Aligned_cols=139  Identities=17%  Similarity=0.234  Sum_probs=69.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCC--CeeeEEEEEEEEECC--EEEEEEEEeCCCccch--------------
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL--TIGVEFGARMVTIDG--RPIKLQIWDTAGQESF--------------   68 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~l~l~D~~G~~~~--------------   68 (211)
                      ++++|+|++|+|||||+|.|.+..+......  ..+.......+.+..  ....+.++|++|....              
T Consensus        43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i  122 (427)
T 2qag_B           43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI  122 (427)
T ss_dssp             EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence            5799999999999999999998754321111  112222222222222  2236789999885321              


Q ss_pred             hhchHHHh-------------cc--ccE-EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCC--
Q 028251           69 RSITRSYY-------------RG--AAG-ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS--  130 (211)
Q Consensus        69 ~~~~~~~~-------------~~--~d~-~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--  130 (211)
                      ...+..++             ..  +|+ ++++.|...+-+...    +..+.... .+.|+|+|.||+|.....+..  
T Consensus       123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D----ieilk~L~-~~~~vI~Vi~KtD~Lt~~E~~~l  197 (427)
T 2qag_B          123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD----LVTMKKLD-SKVNIIPIIAKADAISKSELTKF  197 (427)
T ss_dssp             HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH----HHHHHHTC-SCSEEEEEESCGGGSCHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH----HHHHHHHh-hCCCEEEEEcchhccchHHHHHH
Confidence            01111111             11  233 445556554322222    12222222 589999999999985432211  


Q ss_pred             HHHHHHHHHHcCCcEEEEeC
Q 028251          131 KEEGEQFAKENGLLFLEASA  150 (211)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~s~  150 (211)
                      ...+.......+++++.+|.
T Consensus       198 ~~~I~~~L~~~gi~I~~is~  217 (427)
T 2qag_B          198 KIKITSELVSNGVQIYQFPT  217 (427)
T ss_dssp             HHHHHHHHBTTBCCCCCCC-
T ss_pred             HHHHHHHHHHcCCcEEecCC
Confidence            01112222235677777764

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.92  E-value=2.2e-09  Score=83.24  Aligned_cols=102  Identities=13%  Similarity=0.072  Sum_probs=71.0

Q ss_pred             EEeCCCcc-chhhchHHHhccccEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHH
Q 028251           59 IWDTAGQE-SFRSITRSYYRGAAGALLVYDITRRETFN--HLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGE  135 (211)
Q Consensus        59 l~D~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~  135 (211)
                      +-..||+. .........+..+|+++.|+|+.++.+..  .+..++        .++|.++++||+|+.+..  ..+...
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~--~~~~~~   72 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAA--VTQQWK   72 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHH--HHHHHH
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHH--HHHHHH
Confidence            34578876 34456777889999999999999987653  233332        379999999999996521  122334


Q ss_pred             HHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 028251          136 QFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN  170 (211)
Q Consensus       136 ~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~  170 (211)
                      .+....+++++.+|++++.|++++++.+.+.+...
T Consensus        73 ~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~  107 (282)
T 1puj_A           73 EHFENQGIRSLSINSVNGQGLNQIVPASKEILQEK  107 (282)
T ss_dssp             HHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             HHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHHH
Confidence            44445678999999999999999998888777544

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.89  E-value=2.3e-09  Score=86.24  Aligned_cols=98  Identities=23%  Similarity=0.211  Sum_probs=71.8

Q ss_pred             CCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHH----HH
Q 028251           63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQ----FA  138 (211)
Q Consensus        63 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~----~~  138 (211)
                      ..++.|.+....++..++++++|+|+.++.+     .|...+..... +.|+++|+||+|+.+.. ...+....    .+
T Consensus        56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-~~piilV~NK~DLl~~~-~~~~~~~~~l~~~~  128 (369)
T 3ec1_A           56 LDDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-DNPILLVGNKADLLPRS-VKYPKLLRWMRRMA  128 (369)
T ss_dssp             ---CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-TSCEEEEEECGGGSCTT-CCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-CCCEEEEEEChhcCCCc-cCHHHHHHHHHHHH
Confidence            3578899999999899999999999999763     34444444433 78999999999996532 22333333    34


Q ss_pred             HHcCC---cEEEEeCCCCCCHHHHHHHHHHHH
Q 028251          139 KENGL---LFLEASARTAQNVEEAFIKTAAKI  167 (211)
Q Consensus       139 ~~~~~---~~~~~s~~~~~~i~~~~~~i~~~~  167 (211)
                      ...++   .++.+||++|.|++++++.+.+..
T Consensus       129 ~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~  160 (369)
T 3ec1_A          129 EELGLCPVDVCLVSAAKGIGMAKVMEAINRYR  160 (369)
T ss_dssp             HTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             HHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence            55666   689999999999999998887653

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.86  E-value=5.4e-11  Score=95.67  Aligned_cols=135  Identities=13%  Similarity=0.152  Sum_probs=75.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCC-----CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh----c----hH
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQP-----VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS----I----TR   73 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~----~----~~   73 (211)
                      .+|+++|.+|+|||||+|+|++.....     ......+.+.....+.++..   +.++||||......    +    ..
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~  237 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK  237 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence            579999999999999999999763211     11122244444444554433   67999999643321    1    11


Q ss_pred             HH--hccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEe
Q 028251           74 SY--YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEAS  149 (211)
Q Consensus        74 ~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s  149 (211)
                      .+  ....+.++++++.........+.    .+......+.|+++++||.|....... ....+.+.+..+..+.+.+
T Consensus       238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~----~~d~l~~~~~~~~~v~nk~d~~~~~~~-~~~~~~~~~~~g~~l~p~~  310 (368)
T 3h2y_A          238 LITPTKEIKPMVFQLNEEQTLFFSGLA----RFDYVSGGRRAFTCHFSNRLTIHRTKL-EKADELYKNHAGDLLSPPT  310 (368)
T ss_dssp             HHSCSSCCCCEEEEECTTEEEEETTTE----EEEEEESSSEEEEEEECTTSCEEEEEH-HHHHHHHHHHBTTTBCSSC
T ss_pred             HhccccccCceEEEEcCCCEEEEcceE----EEEEecCCCceEEEEecCccccccccH-HHHHHHHHHHhCCccCCCc
Confidence            11  25677888898874321101110    112223347899999999998653322 2233344444565554444

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.81  E-value=1.9e-08  Score=83.73  Aligned_cols=151  Identities=11%  Similarity=0.046  Sum_probs=82.4

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHH------hCCCCC----CCCCC-----------eeeEEEEEEEE-------------E
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFT------DKRFQP----VHDLT-----------IGVEFGARMVT-------------I   50 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~------~~~~~~----~~~~~-----------~~~~~~~~~~~-------------~   50 (211)
                      ....|+++|.+||||||+++.|.      +.+...    .+.+.           .+..+......             +
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~  179 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF  179 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence            35689999999999999999998      332100    00000           00111110000             0


Q ss_pred             CCEEEEEEEEeCCCccchhh-ch---HHH--hccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeE-EEEEecCCC
Q 028251           51 DGRPIKLQIWDTAGQESFRS-IT---RSY--YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSI-MLVGNKCDL  123 (211)
Q Consensus        51 ~~~~~~l~l~D~~G~~~~~~-~~---~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl  123 (211)
                      ....+.+.|+||||...... +.   ..+  +..+|.+++|+|+........   ....+..    ..|+ ++|+||+|.
T Consensus       180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~---~a~~~~~----~~~i~gvVlNK~D~  252 (504)
T 2j37_W          180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA---QAKAFKD----KVDVASVIVTKLDG  252 (504)
T ss_dssp             HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHH---HHHHHHH----HHCCCCEEEECTTS
T ss_pred             HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHH---HHHHHHh----hcCceEEEEeCCcc
Confidence            00234688999999653221 11   111  227899999999987532111   1122222    2564 899999998


Q ss_pred             CCCCCCCHHHHHHHHHHcCCcE------------------EEEeCCCCCC-HHHHHHHHHHH
Q 028251          124 AHRRAVSKEEGEQFAKENGLLF------------------LEASARTAQN-VEEAFIKTAAK  166 (211)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~------------------~~~s~~~~~~-i~~~~~~i~~~  166 (211)
                      ......    ........+.|+                  +.+|+..|.| +.++++++.+.
T Consensus       253 ~~~~g~----~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          253 HAKGGG----ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             CCCCTH----HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             ccchHH----HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            643211    112223344443                  3467888888 88888777654

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.79  E-value=2.1e-08  Score=77.20  Aligned_cols=137  Identities=22%  Similarity=0.204  Sum_probs=68.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCC-------CCeeeEEEEEEEEECCE--EEEEEEEeCCCccchh-------
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-------LTIGVEFGARMVTIDGR--PIKLQIWDTAGQESFR-------   69 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~~--~~~l~l~D~~G~~~~~-------   69 (211)
                      .++++|+|++|+|||||+|.|++........       ...........+.+...  ...+.++|++|.....       
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            5799999999999999999998654322110       00000001111112222  2367899999832100       


Q ss_pred             hc-------hHH--------------HhccccEEEEEEECC-CHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCC
Q 028251           70 SI-------TRS--------------YYRGAAGALLVYDIT-RRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR  127 (211)
Q Consensus        70 ~~-------~~~--------------~~~~~d~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  127 (211)
                      .+       ...              .+..+++.++++|.. .+-....    +..+..... ..+++++++|+|.....
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD----~~~l~~L~~-~~~vI~Vi~K~D~lt~~  156 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD----LEFMKHLSK-VVNIIPVIAKADTMTLE  156 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH----HHHHHHHHT-TSEEEEEETTGGGSCHH
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH----HHHHHHHHh-cCcEEEEEeccccCCHH
Confidence            00       000              112257888888854 2211111    222233333 38999999999985432


Q ss_pred             CCC--HHHHHHHHHHcCCcEEE
Q 028251          128 AVS--KEEGEQFAKENGLLFLE  147 (211)
Q Consensus       128 ~~~--~~~~~~~~~~~~~~~~~  147 (211)
                      +..  .+.........++.++.
T Consensus       157 e~~~~k~~i~~~l~~~~i~i~~  178 (270)
T 3sop_A          157 EKSEFKQRVRKELEVNGIEFYP  178 (270)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSS
T ss_pred             HHHHHHHHHHHHHHHcCccccC
Confidence            211  12233344456776654

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.75  E-value=2.3e-07  Score=75.43  Aligned_cols=157  Identities=17%  Similarity=0.134  Sum_probs=81.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCe-eeEE--EEEEEEECCEEEEEEEEeCCCccchhhchHHH-----hc
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI-GVEF--GARMVTIDGRPIKLQIWDTAGQESFRSITRSY-----YR   77 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~-----~~   77 (211)
                      ...++|+|++|+|||||+|.|.+........... +...  ........ ..-.+.+||++|..........+     +.
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~-~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~  147 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPNVVFWDLPGIGSTNFPPDTYLEKMKFY  147 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS-SCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecccc-ccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence            3479999999999999999999853322111111 1111  01111111 11146799999853221111222     23


Q ss_pred             cccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCC-------CCCCCCHHH----HHHHHH----HcC
Q 028251           78 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA-------HRRAVSKEE----GEQFAK----ENG  142 (211)
Q Consensus        78 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~-------~~~~~~~~~----~~~~~~----~~~  142 (211)
                      ..+..++ ++..... -..+ .+...+..   .+.|+++|.||.|+.       .-.....++    +..+..    +.+
T Consensus       148 ~~~~~~~-lS~G~~~-kqrv-~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g  221 (413)
T 1tq4_A          148 EYDFFII-ISATRFK-KNDI-DIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENG  221 (413)
T ss_dssp             GCSEEEE-EESSCCC-HHHH-HHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccCCeEE-eCCCCcc-HHHH-HHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4455554 7775211 1111 11112222   278999999999962       111122222    333331    222


Q ss_pred             ---CcEEEEeC--CCCCCHHHHHHHHHHHHHH
Q 028251          143 ---LLFLEASA--RTAQNVEEAFIKTAAKILQ  169 (211)
Q Consensus       143 ---~~~~~~s~--~~~~~i~~~~~~i~~~~~~  169 (211)
                         ..++.+|+  ..+.+++++.+.|.+.+.+
T Consensus       222 ~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe  253 (413)
T 1tq4_A          222 IAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI  253 (413)
T ss_dssp             CSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred             CCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence               35788999  5566788888877766533

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.59  E-value=4.9e-08  Score=75.65  Aligned_cols=58  Identities=28%  Similarity=0.405  Sum_probs=36.0

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcc
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE   66 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~   66 (211)
                      ..++|+++|.+|+|||||+|+|.+......... .+.+.....+.++.   .+.+|||||..
T Consensus       119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~-~g~T~~~~~~~~~~---~~~l~DtpG~~  176 (282)
T 1puj_A          119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDR-PGITTSQQWVKVGK---ELELLDTPGIL  176 (282)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred             CCceEEEEecCCCchHHHHHHHhcCceeecCCC-CCeeeeeEEEEeCC---CEEEEECcCcC
Confidence            458999999999999999999998764332221 13333332333332   46799999964

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.53  E-value=3.5e-08  Score=75.65  Aligned_cols=57  Identities=25%  Similarity=0.403  Sum_probs=36.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES   67 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~   67 (211)
                      ++++++|.+|+|||||+|+|.+....... +..+.+.....+.++.   .+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVG-AQPGITKGIQWFSLEN---GVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccC-CCCCCccceEEEEeCC---CEEEEECCCccc
Confidence            58999999999999999999987653322 2224444333333332   468999999654

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.40  E-value=6.9e-08  Score=74.01  Aligned_cols=93  Identities=12%  Similarity=0.074  Sum_probs=62.1

Q ss_pred             CCCccc-hhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH
Q 028251           62 TAGQES-FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE  140 (211)
Q Consensus        62 ~~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~  140 (211)
                      .||+.. ........+..+|++|.|+|+.++.+..+..     +. ..  ++|.++++||+|+.+..  ..+....+...
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~-----l~-ll--~k~~iivlNK~DL~~~~--~~~~~~~~~~~   73 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG-----VD-FS--RKETIILLNKVDIADEK--TTKKWVEFFKK   73 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT-----SC-CT--TSEEEEEEECGGGSCHH--HHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH-----HH-hc--CCCcEEEEECccCCCHH--HHHHHHHHHHH
Confidence            467653 2345677889999999999999986543211     11 11  78999999999996531  12233445555


Q ss_pred             cCCcEEEEeCCCCCCHHHHHHHHHH
Q 028251          141 NGLLFLEASARTAQNVEEAFIKTAA  165 (211)
Q Consensus       141 ~~~~~~~~s~~~~~~i~~~~~~i~~  165 (211)
                      .+.++ .+|++++.|++++++.+.+
T Consensus        74 ~g~~v-~iSa~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           74 QGKRV-ITTHKGEPRKVLLKKLSFD   97 (262)
T ss_dssp             TTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred             cCCeE-EEECCCCcCHHHHHHHHHH
Confidence            67888 9999999999998876644

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.37  E-value=2.2e-06  Score=70.12  Aligned_cols=86  Identities=15%  Similarity=0.034  Sum_probs=51.1

Q ss_pred             EEEEEEeCCCccchhhc----hH--HHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCC
Q 028251           55 IKLQIWDTAGQESFRSI----TR--SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA  128 (211)
Q Consensus        55 ~~l~l~D~~G~~~~~~~----~~--~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  128 (211)
                      +.+.|+||||.......    ..  .....+|.+++|+|+........   ....+...   -.+..||+||.|....  
T Consensus       183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~---~a~~f~~~---~~i~gVIlTKlD~~~~--  254 (443)
T 3dm5_A          183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN---QALAFKEA---TPIGSIIVTKLDGSAK--  254 (443)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH---HHHHHHHS---CTTEEEEEECCSSCSS--
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH---HHHHHHhh---CCCeEEEEECCCCccc--
Confidence            56889999995432211    11  11235789999999876433222   22233322   3456789999998532  


Q ss_pred             CCHHHHHHHHHHcCCcEEEEeC
Q 028251          129 VSKEEGEQFAKENGLLFLEASA  150 (211)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~s~  150 (211)
                        ...+.......+.|+.+++.
T Consensus       255 --gG~~ls~~~~~g~PI~fig~  274 (443)
T 3dm5_A          255 --GGGALSAVAATGAPIKFIGT  274 (443)
T ss_dssp             --HHHHHHHHHTTCCCEEEEEC
T ss_pred             --ccHHHHHHHHHCCCEEEEEc
Confidence              23344555567888877775

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.20  E-value=1.7e-06  Score=73.21  Aligned_cols=63  Identities=22%  Similarity=0.125  Sum_probs=39.3

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCC-eeeEEEEEEEE--E-CCEEEEEEEEeCCCccc
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT-IGVEFGARMVT--I-DGRPIKLQIWDTAGQES   67 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~-~~~~~~~~~~~--~-~~~~~~l~l~D~~G~~~   67 (211)
                      ..+.|+|+|.+|+|||||+|+|++.........+ .+.+.....+.  + ......+.|+||||...
T Consensus        37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~  103 (592)
T 1f5n_A           37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD  103 (592)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             CCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence            4688999999999999999999987642111111 12222222221  1 12234578999999643

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.19  E-value=9e-07  Score=72.30  Aligned_cols=91  Identities=13%  Similarity=0.056  Sum_probs=53.8

Q ss_pred             EEEEEEEeCCCccc--hh----hchHHH--hccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCC
Q 028251           54 PIKLQIWDTAGQES--FR----SITRSY--YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH  125 (211)
Q Consensus        54 ~~~l~l~D~~G~~~--~~----~~~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  125 (211)
                      ...+.|+||||...  ..    .....+  ....|.+++|+|+........   ....+...   -.+..|++||.|...
T Consensus       179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~---~a~~f~~~---~~~~gVIlTKlD~~a  252 (433)
T 3kl4_A          179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD---LASRFHQA---SPIGSVIITKMDGTA  252 (433)
T ss_dssp             TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH---HHHHHHHH---CSSEEEEEECGGGCS
T ss_pred             CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH---HHHHHhcc---cCCcEEEEecccccc
Confidence            34677999999643  11    111111  124589999999976433222   22333322   346789999999753


Q ss_pred             CCCCCHHHHHHHHHHcCCcEEEEeCCCCCCH
Q 028251          126 RRAVSKEEGEQFAKENGLLFLEASARTAQNV  156 (211)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  156 (211)
                          ....+.......+.|+.+++.  |+++
T Consensus       253 ----~~G~als~~~~~g~Pi~fig~--Ge~v  277 (433)
T 3kl4_A          253 ----KGGGALSAVVATGATIKFIGT--GEKI  277 (433)
T ss_dssp             ----CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred             ----cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence                233445555667899888875  5554

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.17  E-value=5.4e-07  Score=70.44  Aligned_cols=89  Identities=12%  Similarity=0.119  Sum_probs=60.0

Q ss_pred             hchHHHhccccEEEEEEECCCHHHH-HHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCC--CCHHHHHHHHHHcCCcEE
Q 028251           70 SITRSYYRGAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA--VSKEEGEQFAKENGLLFL  146 (211)
Q Consensus        70 ~~~~~~~~~~d~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~  146 (211)
                      .+....+.++|.+++|+|+.+|..- ..+..++....   ..++|.++|+||+|+.+...  ...+.........+.+++
T Consensus        78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~---~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~  154 (307)
T 1t9h_A           78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE---ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVY  154 (307)
T ss_dssp             EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH---TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred             hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH---HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEE
Confidence            3445578999999999999987542 33333332222   23789999999999975422  012344455556788999


Q ss_pred             EEeCCCCCCHHHHHH
Q 028251          147 EASARTAQNVEEAFI  161 (211)
Q Consensus       147 ~~s~~~~~~i~~~~~  161 (211)
                      .+|+.++.|++++++
T Consensus       155 ~~sa~~~~g~~~L~~  169 (307)
T 1t9h_A          155 LTSSKDQDSLADIIP  169 (307)
T ss_dssp             ECCHHHHTTCTTTGG
T ss_pred             EEecCCCCCHHHHHh
Confidence            999998888776553

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.13  E-value=1e-05  Score=66.20  Aligned_cols=85  Identities=15%  Similarity=0.048  Sum_probs=48.3

Q ss_pred             EEEEEEEeCCCccchhhch----HHH--hccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC-e-EEEEEecCCCCC
Q 028251           54 PIKLQIWDTAGQESFRSIT----RSY--YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNM-S-IMLVGNKCDLAH  125 (211)
Q Consensus        54 ~~~l~l~D~~G~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-p-~ivv~nK~Dl~~  125 (211)
                      .+.+.|+||||........    ..+  +..+|.+++|+|+.....   ....   ...... .. | ..+|+||+|...
T Consensus       180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~---~~~~~~-~~~~i~gvVlnK~D~~~  252 (432)
T 2v3c_C          180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQ---AKAFKE-AVGEIGSIIVTKLDGSA  252 (432)
T ss_dssp             SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHH---HHHHHT-TSCSCEEEEEECSSSCS
T ss_pred             CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHH---HHHHhh-cccCCeEEEEeCCCCcc
Confidence            3467899999965432111    111  126889999999865432   1111   122221 34 5 889999999753


Q ss_pred             CCCCCHHHHHHHHHHcCCcEEEEe
Q 028251          126 RRAVSKEEGEQFAKENGLLFLEAS  149 (211)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~s  149 (211)
                      ..    ..........+.++.+++
T Consensus       253 ~~----g~~l~~~~~~~~pi~~ig  272 (432)
T 2v3c_C          253 KG----GGALSAVAETKAPIKFIG  272 (432)
T ss_dssp             TT----HHHHHHHHHSSCCEEEEC
T ss_pred             ch----HHHHHHHHHHCCCEEEee
Confidence            21    223345556777766553

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.05  E-value=1.2e-05  Score=68.76  Aligned_cols=24  Identities=29%  Similarity=0.394  Sum_probs=21.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      ..|+|+|++|||||||++.+.+..
T Consensus        46 p~iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           46 PAIAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred             CeEEEECCCCChHHHHHHHHhCCC
Confidence            459999999999999999999864

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.03  E-value=1.4e-05  Score=62.15  Aligned_cols=92  Identities=15%  Similarity=0.085  Sum_probs=55.6

Q ss_pred             EEEEEEEeCCCccc--hhh-chH-----HHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEecCCCC
Q 028251           54 PIKLQIWDTAGQES--FRS-ITR-----SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLA  124 (211)
Q Consensus        54 ~~~l~l~D~~G~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~  124 (211)
                      .+.+.|+||||...  ... +..     .....+|.+++|+|+.....   .......+..    ..| ..+++||.|..
T Consensus       180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~----~~~i~gvVlnk~D~~  252 (297)
T 1j8m_F          180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ----ASKIGTIIITKMDGT  252 (297)
T ss_dssp             TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH----TCTTEEEEEECGGGC
T ss_pred             CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh----hCCCCEEEEeCCCCC
Confidence            34678999999765  322 111     13447899999999864321   1111222222    345 77889999974


Q ss_pred             CCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Q 028251          125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEE  158 (211)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  158 (211)
                      .    ............+.++.+++  .|+++++
T Consensus       253 ~----~~g~~~~~~~~~~~pi~~i~--~Ge~v~d  280 (297)
T 1j8m_F          253 A----KGGGALSAVAATGATIKFIG--TGEKIDE  280 (297)
T ss_dssp             T----THHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             c----chHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence            3    23344556667888888776  4556544

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.93  E-value=2.9e-05  Score=61.82  Aligned_cols=84  Identities=18%  Similarity=0.166  Sum_probs=54.8

Q ss_pred             HhccccEEEEEEECCCHHH-HHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC-CHHHHHHHHHHcCCcEEEEeCCC
Q 028251           75 YYRGAAGALLVYDITRRET-FNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV-SKEEGEQFAKENGLLFLEASART  152 (211)
Q Consensus        75 ~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~  152 (211)
                      ...++|.+++|.+. +|.. ...+..++......   ++|.+||+||+|+.+.... ..+.........+++++.+|+.+
T Consensus       127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~---~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~  202 (358)
T 2rcn_A          127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCETL---QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT  202 (358)
T ss_dssp             EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH---TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred             HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc---CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence            46889999988665 4543 33344443333332   7888999999999653210 01223344445788999999999


Q ss_pred             CCCHHHHHHH
Q 028251          153 AQNVEEAFIK  162 (211)
Q Consensus       153 ~~~i~~~~~~  162 (211)
                      +.|++++...
T Consensus       203 ~~gl~~L~~~  212 (358)
T 2rcn_A          203 QDGLKPLEEA  212 (358)
T ss_dssp             TBTHHHHHHH
T ss_pred             CcCHHHHHHh
Confidence            9999887653

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.85  E-value=4.8e-05  Score=60.03  Aligned_cols=91  Identities=12%  Similarity=0.022  Sum_probs=51.2

Q ss_pred             EEEEEeCCCccchhhchHH------HhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC
Q 028251           56 KLQIWDTAGQESFRSITRS------YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV  129 (211)
Q Consensus        56 ~l~l~D~~G~~~~~~~~~~------~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~  129 (211)
                      .+.+.|++|..........      ..-..|-.+++.|.....   ++......+....   ...++++||.|....   
T Consensus       213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~---~it~iilTKlD~~a~---  283 (328)
T 3e70_C          213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV---KIDGIILTKLDADAR---  283 (328)
T ss_dssp             SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS---CCCEEEEECGGGCSC---
T ss_pred             hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc---CCCEEEEeCcCCccc---
Confidence            3567999996432221111      112468889999975542   2222333333221   234788899996321   


Q ss_pred             CHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Q 028251          130 SKEEGEQFAKENGLLFLEASARTAQNVEE  158 (211)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  158 (211)
                       .-.........+.|+.+++  +|+++++
T Consensus       284 -~G~~l~~~~~~~~pi~~i~--~Ge~v~d  309 (328)
T 3e70_C          284 -GGAALSISYVIDAPILFVG--VGQGYDD  309 (328)
T ss_dssp             -CHHHHHHHHHHTCCEEEEE--CSSSTTC
T ss_pred             -hhHHHHHHHHHCCCEEEEe--CCCCccc
Confidence             2334456666788888876  5666544

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.79  E-value=1.6e-06  Score=71.92  Aligned_cols=113  Identities=15%  Similarity=0.149  Sum_probs=62.4

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc--hhhch--------HH
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES--FRSIT--------RS   74 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~--~~~~~--------~~   74 (211)
                      ....|+++|.+|+||||+.++|....... ...+.............+......+||..|.+.  ....+        ..
T Consensus        38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~  116 (469)
T 1bif_A           38 CPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK  116 (469)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            35689999999999999999987442111 111111000000000111112335789888632  22222        45


Q ss_pred             HhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCC
Q 028251           75 YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD  122 (211)
Q Consensus        75 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  122 (211)
                      ++...++.++|+|.++. +......|+..+...   +.+++++-..++
T Consensus       117 ~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~---~~~vv~l~~~~~  160 (469)
T 1bif_A          117 FLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN---GYKTFFVESICV  160 (469)
T ss_dssp             HHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH---TCEEEEEEECCC
T ss_pred             HHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc---CCcEEEEEEECC
Confidence            55567888999999987 445555666655544   445555543333

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.58  E-value=7.4e-05  Score=61.26  Aligned_cols=25  Identities=20%  Similarity=0.121  Sum_probs=21.9

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhC
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      ...-|.|+|++++|||+|+|+|++.
T Consensus        66 ~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           66 EVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCcHHHHHHHHhhh
Confidence            4566899999999999999999863

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.47  E-value=7.3e-05  Score=53.69  Aligned_cols=24  Identities=38%  Similarity=0.710  Sum_probs=20.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .+++++|++|+|||||++.+.+.-
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~l   24 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            368999999999999999988653

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.34  E-value=0.00013  Score=53.54  Aligned_cols=29  Identities=31%  Similarity=0.293  Sum_probs=22.2

Q ss_pred             CCCCceeeEEEEcCCCCCHHHHHHHHHhC
Q 028251            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      |+-.....|+|+|++|||||||++.|.+.
T Consensus         1 ~~~~~~~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            1 MSAPKPFVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             ----CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEECCCCCCHHHHHHHHHHH
Confidence            65556678999999999999999998763

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.33  E-value=0.00012  Score=52.42  Aligned_cols=22  Identities=23%  Similarity=0.529  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .++|+|++|||||||++.|.+.
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999999864

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.33  E-value=0.00012  Score=53.31  Aligned_cols=22  Identities=32%  Similarity=0.499  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHh
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      -.++|+|++|+|||||++.|.+
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999999986

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.30  E-value=0.00017  Score=52.54  Aligned_cols=28  Identities=21%  Similarity=0.392  Sum_probs=22.4

Q ss_pred             CCCceeeEEEEcCCCCCHHHHHHHHHhC
Q 028251            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      +....--|+|+|++|+|||||++.|...
T Consensus        15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           15 YFQGRKTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             -CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence            3444456899999999999999999854

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.29  E-value=0.00017  Score=52.56  Aligned_cols=30  Identities=20%  Similarity=0.336  Sum_probs=23.6

Q ss_pred             CCCCceeeEEEEcCCCCCHHHHHHHHHhCC
Q 028251            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      |+......|+|+|++||||||+++.|.+.-
T Consensus         1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             ---CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            555666789999999999999999998654

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.27  E-value=0.0002  Score=57.00  Aligned_cols=24  Identities=38%  Similarity=0.462  Sum_probs=21.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRF   31 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~   31 (211)
                      .++|+|++|+|||||+|.|.+...
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             EEEEECCCCccHHHHHHHHhcccc
Confidence            589999999999999999997653

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.26  E-value=7e-05  Score=58.48  Aligned_cols=23  Identities=35%  Similarity=0.554  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .++++|++|+|||||+|.|.+..
T Consensus       175 ~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          175 TTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC--
T ss_pred             EEEEECCCCCCHHHHHHHhcccc
Confidence            68999999999999999998654

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.21  E-value=0.0002  Score=52.19  Aligned_cols=22  Identities=27%  Similarity=0.517  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      -++|+|++|||||||++.|.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            5899999999999999999865

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.20  E-value=0.0002  Score=52.53  Aligned_cols=23  Identities=22%  Similarity=0.406  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      -++|+|++|||||||++.+.+..
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            47899999999999999998653

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.19  E-value=0.00023  Score=51.88  Aligned_cols=29  Identities=21%  Similarity=0.369  Sum_probs=21.3

Q ss_pred             CCCCceeeEEEEcCCCCCHHHHHHHHHhC
Q 028251            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      |+....-.|+|+|++|||||||++.|.+.
T Consensus        24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~   52 (200)
T 4eun_A           24 MTGEPTRHVVVMGVSGSGKTTIAHGVADE   52 (200)
T ss_dssp             ----CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             hcCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            33344457999999999999999998753

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.18  E-value=0.00022  Score=52.96  Aligned_cols=23  Identities=30%  Similarity=0.564  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      -++|+|++|||||||++.|.+..
T Consensus        18 ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           18 LYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            57899999999999999998753

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.16  E-value=0.00027  Score=50.84  Aligned_cols=24  Identities=21%  Similarity=0.275  Sum_probs=21.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhC
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .-.|+|+|++|||||||++.|.+.
T Consensus         9 g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            9 GNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhc
Confidence            346899999999999999999865

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.16  E-value=0.00023  Score=52.67  Aligned_cols=23  Identities=30%  Similarity=0.574  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|++|||||||++.|.+..
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            58999999999999999998743

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.14  E-value=0.013  Score=47.95  Aligned_cols=83  Identities=14%  Similarity=0.038  Sum_probs=44.8

Q ss_pred             EEEEEEEeCCCccchhhchH------HHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEecCCCCCC
Q 028251           54 PIKLQIWDTAGQESFRSITR------SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHR  126 (211)
Q Consensus        54 ~~~l~l~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~  126 (211)
                      .+.+.|+||||.........      .....+|.+++|+|+......   ......+..    ..+ ..+|+||.|....
T Consensus       183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~----~l~i~gvVlnK~D~~~~  255 (433)
T 2xxa_A          183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNE----ALPLTGVVLTKVDGDAR  255 (433)
T ss_dssp             TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHH----HSCCCCEEEECTTSSSC
T ss_pred             CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhc----cCCCeEEEEecCCCCcc
Confidence            35688999999654322111      123468899999998754221   111222222    234 3578999997532


Q ss_pred             CCCCHHHHHHHHHHcCCcEEE
Q 028251          127 RAVSKEEGEQFAKENGLLFLE  147 (211)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~  147 (211)
                      .    ..........+.|+.+
T Consensus       256 ~----g~~l~i~~~~~~Pi~~  272 (433)
T 2xxa_A          256 G----GAALSIRHITGKPIKF  272 (433)
T ss_dssp             C----THHHHHHHHHCCCEEE
T ss_pred             H----HHHHHHHHHHCCCeEE
Confidence            2    1233444445665433

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.14  E-value=0.00079  Score=52.43  Aligned_cols=22  Identities=41%  Similarity=0.650  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .++++|++|+|||||+|.|. ..
T Consensus       167 i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          167 ICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             EEEEECSTTSSHHHHHHHHH-SC
T ss_pred             EEEEECCCCCCHHHHHHHHH-Hh
Confidence            57899999999999999999 53

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.14  E-value=0.00027  Score=49.68  Aligned_cols=23  Identities=26%  Similarity=0.313  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .++++|+.|+|||||++.+.+..
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            58999999999999999998764

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.09  E-value=0.00024  Score=50.48  Aligned_cols=20  Identities=30%  Similarity=0.506  Sum_probs=17.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHH
Q 028251            8 KYIIIGDTGVGKSCLLLQFT   27 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~   27 (211)
                      -++++|++|||||||++.+.
T Consensus        11 i~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            47899999999999999754

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.08  E-value=0.00028  Score=52.98  Aligned_cols=23  Identities=30%  Similarity=0.306  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999998653

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.05  E-value=0.00036  Score=51.18  Aligned_cols=24  Identities=21%  Similarity=0.349  Sum_probs=20.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      --|+|+|++|||||||++.|....
T Consensus         9 ~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            9 LLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHST
T ss_pred             cEEEEECcCCCCHHHHHHHHHhhC
Confidence            358899999999999999998653

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.02  E-value=0.00033  Score=51.34  Aligned_cols=25  Identities=24%  Similarity=0.166  Sum_probs=21.5

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhC
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      ....|+|+|++|+|||||++.|.+.
T Consensus        21 ~g~~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A           21 GRQLVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3467999999999999999998754

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.02  E-value=0.00033  Score=52.16  Aligned_cols=23  Identities=39%  Similarity=0.397  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|++|+|||||++.+.+-.
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998653

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.01  E-value=0.00041  Score=50.10  Aligned_cols=21  Identities=38%  Similarity=0.607  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 028251            9 YIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         9 i~vvG~~~~GKSsli~~l~~~   29 (211)
                      |+|+||+||||+||+++|+..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999854

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.00  E-value=0.00041  Score=52.24  Aligned_cols=23  Identities=30%  Similarity=0.471  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .++++|++|+|||||++.+.+-.
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998653

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=96.98  E-value=0.00041  Score=51.26  Aligned_cols=23  Identities=26%  Similarity=0.352  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|++|+|||||++.+.+-.
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998653

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=96.96  E-value=0.00042  Score=52.87  Aligned_cols=23  Identities=35%  Similarity=0.381  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|++|||||||++.+.+-.
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998653

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=96.96  E-value=0.00042  Score=53.24  Aligned_cols=23  Identities=39%  Similarity=0.573  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|++|||||||++.+.+-.
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47899999999999999998653

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=96.93  E-value=0.00045  Score=51.87  Aligned_cols=22  Identities=32%  Similarity=0.542  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .++|+|++|+|||||++.+.+-
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl   54 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAE   54 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999999865

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=96.92  E-value=0.00053  Score=49.32  Aligned_cols=21  Identities=43%  Similarity=0.635  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHh
Q 028251            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~   28 (211)
                      .++|+|++|+|||||++.|..
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            578999999999999999975

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=96.92  E-value=0.00046  Score=52.46  Aligned_cols=23  Identities=39%  Similarity=0.452  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|++|+|||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998653

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.92  E-value=0.00053  Score=49.65  Aligned_cols=22  Identities=27%  Similarity=0.548  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .++++|++|+|||||++.+.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            5899999999999999998754

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=96.91  E-value=0.0005  Score=51.35  Aligned_cols=23  Identities=30%  Similarity=0.528  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|++|+|||||++.+.+..
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998653

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.91  E-value=0.00047  Score=52.71  Aligned_cols=23  Identities=43%  Similarity=0.491  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|++|+|||||++.+.+-.
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999998653

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.90  E-value=0.0005  Score=52.47  Aligned_cols=22  Identities=32%  Similarity=0.451  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .++|+|++|+|||||++.+.+-
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl   73 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLL   73 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Confidence            4789999999999999999865

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=96.90  E-value=0.00082  Score=47.63  Aligned_cols=23  Identities=26%  Similarity=0.533  Sum_probs=20.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHh
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ...|+|+|++|+||||+.+.|.+
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            45799999999999999999874

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.90  E-value=0.0005  Score=51.70  Aligned_cols=23  Identities=26%  Similarity=0.368  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|++|+|||||++.+.+-.
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998653

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=96.90  E-value=0.00057  Score=51.52  Aligned_cols=23  Identities=22%  Similarity=0.239  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|++|+|||||++.+.+-.
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57999999999999999998653

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.89  E-value=0.00052  Score=52.16  Aligned_cols=23  Identities=26%  Similarity=0.375  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|++|+|||||++.+.+-.
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998653

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=96.89  E-value=0.00057  Score=51.67  Aligned_cols=23  Identities=30%  Similarity=0.287  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|++|+|||||++.+.+-.
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998653

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.88  E-value=0.00057  Score=51.71  Aligned_cols=22  Identities=27%  Similarity=0.365  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .++|+|++|+|||||++.+.+-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999975

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.88  E-value=0.00054  Score=51.83  Aligned_cols=23  Identities=30%  Similarity=0.511  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|++|+|||||++.+.+-.
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999998653

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=96.87  E-value=0.00064  Score=48.03  Aligned_cols=23  Identities=26%  Similarity=0.453  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      ..|+|+|++||||||+.+.|.+.
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999998754

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.87  E-value=0.0006  Score=52.13  Aligned_cols=22  Identities=32%  Similarity=0.477  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .++|+|++|+|||||++.+.+-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999975

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.86  E-value=0.00074  Score=48.47  Aligned_cols=29  Identities=21%  Similarity=0.322  Sum_probs=23.5

Q ss_pred             CCCCceeeEEEEcCCCCCHHHHHHHHHhC
Q 028251            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      |.......|+|+|++||||||+.+.|...
T Consensus         5 ~~~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            5 MEQPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             -CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            44445678999999999999999998754

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.85  E-value=0.00043  Score=50.91  Aligned_cols=22  Identities=23%  Similarity=0.309  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .++|+|++|+|||||++.+.+.
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999876

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.84  E-value=0.00066  Score=49.54  Aligned_cols=23  Identities=26%  Similarity=0.501  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .-|+|+|++|||||||++.|...
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            45899999999999999999754

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.84  E-value=0.00065  Score=51.76  Aligned_cols=22  Identities=32%  Similarity=0.487  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .++|+|++|+|||||++.+.+.
T Consensus        27 ~v~i~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A           27 LILVTGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             EEEEECSTTCSHHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHHh
Confidence            5899999999999999998753

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.84  E-value=0.00066  Score=52.28  Aligned_cols=23  Identities=35%  Similarity=0.546  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|++|+|||||++.+.+-.
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999998653

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.83  E-value=0.00067  Score=51.67  Aligned_cols=22  Identities=27%  Similarity=0.391  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .++|+|++|+|||||++.+.+-
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5799999999999999999865

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.82  E-value=0.00063  Score=52.14  Aligned_cols=23  Identities=22%  Similarity=0.336  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|++|+|||||++.+.+-.
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998653

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.81  E-value=0.00065  Score=51.52  Aligned_cols=23  Identities=30%  Similarity=0.447  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|++|+|||||++.+.+-.
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998653

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.79  E-value=0.00068  Score=51.81  Aligned_cols=23  Identities=35%  Similarity=0.458  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|++|+|||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999998653

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.79  E-value=0.00082  Score=50.55  Aligned_cols=21  Identities=24%  Similarity=0.564  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHH
Q 028251            7 FKYIIIGDTGVGKSCLLLQFT   27 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~   27 (211)
                      ..|+|+|++|||||||++.|.
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999998

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.79  E-value=0.001  Score=47.64  Aligned_cols=28  Identities=18%  Similarity=0.224  Sum_probs=23.7

Q ss_pred             CCCCceeeEEEEcCCCCCHHHHHHHHHh
Q 028251            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      |+-.....|+|.|++||||||+.+.|..
T Consensus         1 m~~~~~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            1 MEKSKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCCCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCCcCcEEEEECCCCCCHHHHHHHHHH
Confidence            5666667899999999999999998864

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.78  E-value=0.0008  Score=52.40  Aligned_cols=22  Identities=27%  Similarity=0.261  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .++|+|++|+|||||++.|.+-
T Consensus       128 ~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          128 CLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhhh
Confidence            6899999999999999999854

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.75  E-value=0.00089  Score=47.07  Aligned_cols=20  Identities=30%  Similarity=0.300  Sum_probs=18.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHH
Q 028251            7 FKYIIIGDTGVGKSCLLLQF   26 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l   26 (211)
                      +.|+|.|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999999

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.74  E-value=0.00088  Score=51.09  Aligned_cols=23  Identities=39%  Similarity=0.575  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|++|+|||||++.+.+..
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998654

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.71  E-value=0.0009  Score=49.44  Aligned_cols=23  Identities=22%  Similarity=0.237  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      -++|+|++|+|||||++.+.+..
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999998743

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.70  E-value=0.0009  Score=47.71  Aligned_cols=23  Identities=26%  Similarity=0.397  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      -.++++|++|+|||||++.+.+.
T Consensus        39 ~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           39 KGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CEEEECCSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999998754

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.69  E-value=0.00095  Score=52.22  Aligned_cols=25  Identities=24%  Similarity=0.195  Sum_probs=21.6

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhC
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      ...-|+|+|++|||||||++.|.+.
T Consensus        89 ~g~ivgI~G~sGsGKSTL~~~L~gl  113 (312)
T 3aez_A           89 VPFIIGVAGSVAVGKSTTARVLQAL  113 (312)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCchHHHHHHHHHhh
Confidence            4567999999999999999998754

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.68  E-value=0.001  Score=48.62  Aligned_cols=28  Identities=18%  Similarity=0.114  Sum_probs=21.7

Q ss_pred             CCCCceeeEEEEcCCCCCHHHHHHHHHh
Q 028251            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      |.-.....|+|.|.+||||||+.+.|..
T Consensus         4 m~~~~~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            4 MAARRGALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             ---CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4434456899999999999999999874

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.68  E-value=0.0006  Score=50.78  Aligned_cols=23  Identities=13%  Similarity=0.327  Sum_probs=15.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHH-hC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFT-DK   29 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~-~~   29 (211)
                      --++|+|++|||||||++.|. +.
T Consensus        28 ~ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           28 VILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             CEEEEECSCC----CHHHHHHC--
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcC
Confidence            358999999999999999998 54

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.68  E-value=0.0011  Score=46.70  Aligned_cols=22  Identities=18%  Similarity=0.169  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .|+|.|++||||||+.+.|...
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998643

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.68  E-value=0.0013  Score=46.67  Aligned_cols=22  Identities=32%  Similarity=0.371  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHh
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ..|+|.|++||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4689999999999999999986

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.67  E-value=0.0011  Score=48.71  Aligned_cols=22  Identities=23%  Similarity=0.447  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHh
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ++|+|.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999853

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.66  E-value=0.0012  Score=51.39  Aligned_cols=24  Identities=33%  Similarity=0.311  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRF   31 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~   31 (211)
                      .++++|++|+|||||+|.|.+...
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~~  194 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGLK  194 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred             eEEEECCCCCcHHHHHHHhccccc
Confidence            578999999999999999987543

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.66  E-value=0.0013  Score=48.62  Aligned_cols=23  Identities=26%  Similarity=0.307  Sum_probs=20.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHh
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ...|+|+|++||||||+.+.|..
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998864

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.65  E-value=0.00092  Score=48.61  Aligned_cols=24  Identities=25%  Similarity=0.243  Sum_probs=20.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhC
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      ...|+|+|++|+||||+.+.|.+.
T Consensus        25 g~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           25 GCVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            456899999999999999988754

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.65  E-value=0.0013  Score=49.43  Aligned_cols=24  Identities=25%  Similarity=0.268  Sum_probs=21.0

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHh
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ....|+|+|+.|||||||++.|.+
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            345699999999999999999876

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.65  E-value=0.001  Score=53.04  Aligned_cols=23  Identities=35%  Similarity=0.512  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      -++|+|++|||||||++.+.+-.
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            37899999999999999998654

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.64  E-value=0.0012  Score=48.00  Aligned_cols=22  Identities=27%  Similarity=0.459  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHh
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ..|+|+|++||||||+.+.|..
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3799999999999999999986

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.64  E-value=0.0012  Score=48.57  Aligned_cols=22  Identities=18%  Similarity=0.400  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHh
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ++|+|.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999853

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.63  E-value=0.0012  Score=47.02  Aligned_cols=23  Identities=22%  Similarity=0.225  Sum_probs=20.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .-++++|++|+|||||+++|...
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            46899999999999999999864

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.62  E-value=0.0011  Score=51.31  Aligned_cols=22  Identities=32%  Similarity=0.585  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .++|+|++|+|||||++.+.+-
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl   87 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGE   87 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            4789999999999999999865

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.60  E-value=0.0013  Score=47.86  Aligned_cols=23  Identities=22%  Similarity=0.351  Sum_probs=20.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      ..|+|+|++||||||+.+.|...
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            36999999999999999998643

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.59  E-value=0.0012  Score=52.52  Aligned_cols=23  Identities=22%  Similarity=0.369  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      -++|+|++|||||||++.+.+-.
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999998654

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.59  E-value=0.0015  Score=47.53  Aligned_cols=22  Identities=32%  Similarity=0.505  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHh
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      +.|+|+|++||||||+.+.|..
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5699999999999999999975

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.59  E-value=0.0017  Score=46.32  Aligned_cols=23  Identities=22%  Similarity=0.317  Sum_probs=20.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHh
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ...|+++|++||||||+.+.|..
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999863

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.58  E-value=0.0013  Score=52.55  Aligned_cols=23  Identities=35%  Similarity=0.456  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      -++|+|++|||||||++.+.+-.
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHhcCC
Confidence            47899999999999999998653

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.58  E-value=0.0015  Score=47.44  Aligned_cols=22  Identities=27%  Similarity=0.465  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHh
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      -.|+++|++||||||+.+.|..
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            4799999999999999999864

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.57  E-value=0.0011  Score=53.00  Aligned_cols=24  Identities=25%  Similarity=0.326  Sum_probs=21.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhC
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .-+++|+|++|+|||||++.|.+.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl  193 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAV  193 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999999865

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.57  E-value=0.00077  Score=52.58  Aligned_cols=22  Identities=27%  Similarity=0.455  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .++|+|++|+|||||++.+.+-
T Consensus        82 ~vaivG~sGsGKSTLl~ll~gl  103 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFRF  103 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTTS
T ss_pred             EEEEECCCCchHHHHHHHHHcC
Confidence            5899999999999999988854

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.56  E-value=0.0013  Score=52.46  Aligned_cols=23  Identities=26%  Similarity=0.431  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      -++++|++|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHCCC
Confidence            47899999999999999998653

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.56  E-value=0.0013  Score=52.74  Aligned_cols=23  Identities=30%  Similarity=0.481  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      -++|+|++|||||||++.+.+-.
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHcCC
Confidence            37899999999999999998654

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.55  E-value=0.0013  Score=52.40  Aligned_cols=23  Identities=30%  Similarity=0.459  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      -++++|++|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            47899999999999999998653

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.55  E-value=0.0016  Score=47.16  Aligned_cols=21  Identities=33%  Similarity=0.567  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHh
Q 028251            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~   28 (211)
                      .|+|.|++||||||+.+.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999999875

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.54  E-value=0.0014  Score=46.37  Aligned_cols=23  Identities=22%  Similarity=0.265  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      ..|+|.|++||||||+.+.|...
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999999753

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.53  E-value=0.0016  Score=47.78  Aligned_cols=22  Identities=18%  Similarity=0.433  Sum_probs=19.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHh
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      +.|+++|+|||||+|...+|..
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998863

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.53  E-value=0.0046  Score=42.35  Aligned_cols=23  Identities=13%  Similarity=0.200  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      ..|++.|++|+|||++.+.+...
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CcEEEECCCCccHHHHHHHHHHh
Confidence            46999999999999999877643

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.51  E-value=0.0018  Score=46.05  Aligned_cols=24  Identities=29%  Similarity=0.488  Sum_probs=20.6

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHh
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ....|++.|++|+||||+.+.|..
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHH
Confidence            345699999999999999999863

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.51  E-value=0.00072  Score=48.12  Aligned_cols=22  Identities=23%  Similarity=0.401  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .++|+|++|+|||||++.|.+.
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998854

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.51  E-value=0.0015  Score=52.42  Aligned_cols=23  Identities=26%  Similarity=0.442  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      -++|+|++|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCcHHHHHHHHHHcCC
Confidence            37899999999999999998654

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.50  E-value=0.0021  Score=46.50  Aligned_cols=24  Identities=13%  Similarity=0.097  Sum_probs=21.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhC
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      ...|+|.|++||||||+.+.|...
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            467999999999999999999864

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.50  E-value=0.0015  Score=52.31  Aligned_cols=23  Identities=22%  Similarity=0.431  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      -++|+|++|||||||++.+.+-.
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            47899999999999999998653

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.50  E-value=0.0015  Score=52.11  Aligned_cols=22  Identities=36%  Similarity=0.483  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .|+|+|++|+|||||++.+.+.
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g~  146 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLDY  146 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            6899999999999999998753

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.49  E-value=0.0017  Score=46.47  Aligned_cols=22  Identities=23%  Similarity=0.235  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHh
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ..|+|.|++||||||+.+.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999864

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.47  E-value=0.0019  Score=46.17  Aligned_cols=22  Identities=36%  Similarity=0.463  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHh
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ..|+|.|++||||||+.+.|..
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999864

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.47  E-value=0.0021  Score=46.80  Aligned_cols=23  Identities=26%  Similarity=0.176  Sum_probs=20.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHh
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ...|+|.|++||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            46799999999999999999874

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.44  E-value=0.0017  Score=49.75  Aligned_cols=22  Identities=23%  Similarity=0.449  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .++++|++|+|||+|++.+.+.
T Consensus        46 GvlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           46 GVLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEEESSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            3899999999999999999864

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.44  E-value=0.0026  Score=46.28  Aligned_cols=24  Identities=25%  Similarity=0.135  Sum_probs=21.0

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHh
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ....|+|+|++|+|||||++.|.+
T Consensus        21 ~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           21 GRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999999875

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.44  E-value=0.0018  Score=50.51  Aligned_cols=22  Identities=23%  Similarity=0.462  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHh
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      -.|+++|++||||||+++.|.+
T Consensus       103 ~vi~lvG~nGsGKTTll~~Lag  124 (304)
T 1rj9_A          103 RVVLVVGVNGVGKTTTIAKLGR  124 (304)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHH
Confidence            4689999999999999999863

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.43  E-value=0.0019  Score=47.44  Aligned_cols=22  Identities=18%  Similarity=0.338  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHh
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ++|+|.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999999864

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.42  E-value=0.0018  Score=50.38  Aligned_cols=22  Identities=27%  Similarity=0.383  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHh
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      --++++|++||||||+++.|.+
T Consensus       101 ~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A          101 AVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            4689999999999999999864

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.40  E-value=0.0027  Score=49.82  Aligned_cols=24  Identities=25%  Similarity=0.207  Sum_probs=21.0

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHh
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ..+-|+|+|++|||||||++.|.+
T Consensus        91 ~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           91 VPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999998864

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.39  E-value=0.0024  Score=46.90  Aligned_cols=23  Identities=30%  Similarity=0.494  Sum_probs=20.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHh
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      .+.|+|.|++||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999975

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.39  E-value=0.0012  Score=45.75  Aligned_cols=22  Identities=32%  Similarity=0.519  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .++++|++|+|||+|++.+.+.
T Consensus        38 ~~~l~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999864

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.38  E-value=0.0024  Score=45.80  Aligned_cols=23  Identities=22%  Similarity=0.294  Sum_probs=20.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHh
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ...|+|.|++||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999864

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.38  E-value=0.003  Score=45.77  Aligned_cols=24  Identities=17%  Similarity=0.322  Sum_probs=20.8

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHh
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ....|+|.|++||||||+.+.|..
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            446799999999999999999863

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.38  E-value=0.0012  Score=52.39  Aligned_cols=23  Identities=30%  Similarity=0.557  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      -++++|++|||||||++.+.+-.
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCccHHHHHHHHHcCC
Confidence            47899999999999999998653

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.38  E-value=0.0018  Score=51.72  Aligned_cols=22  Identities=27%  Similarity=0.594  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .++|+|++|+|||||++.|.+.
T Consensus       177 ~i~ivG~sGsGKSTll~~l~~~  198 (361)
T 2gza_A          177 VIVVAGETGSGKTTLMKALMQE  198 (361)
T ss_dssp             CEEEEESSSSCHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            6899999999999999999864

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.37  E-value=0.0022  Score=45.73  Aligned_cols=22  Identities=27%  Similarity=0.383  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHh
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ..|+++|++||||||+.+.|..
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999863

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.37  E-value=0.0029  Score=46.09  Aligned_cols=24  Identities=29%  Similarity=0.300  Sum_probs=21.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhC
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      ...|+|+|++|+||||+.+.|...
T Consensus        21 ~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           21 TFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHh
Confidence            457999999999999999999864

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.37  E-value=0.0026  Score=45.59  Aligned_cols=23  Identities=17%  Similarity=0.406  Sum_probs=20.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHh
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ...|+|.|++||||||+.+.|..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998863

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.37  E-value=0.0019  Score=50.31  Aligned_cols=24  Identities=25%  Similarity=0.242  Sum_probs=21.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhC
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      ...|+|+|++|||||||++.|.+.
T Consensus        80 g~iigI~G~~GsGKSTl~~~L~~~  103 (308)
T 1sq5_A           80 PYIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999999864

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.36  E-value=0.0024  Score=48.22  Aligned_cols=27  Identities=22%  Similarity=0.203  Sum_probs=21.5

Q ss_pred             CCCceeeEEEEcCCCCCHHHHHHHHHh
Q 028251            2 SYDYLFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      .....+.|+|.|++||||||+.+.|..
T Consensus        18 ~~~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           18 NGGEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             ---CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence            344567899999999999999998864

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.36  E-value=0.0027  Score=47.67  Aligned_cols=24  Identities=29%  Similarity=0.436  Sum_probs=21.3

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHh
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ..+.|+|.|++||||||+.+.|..
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999863

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.35  E-value=0.0022  Score=51.47  Aligned_cols=22  Identities=32%  Similarity=0.487  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .++|+|++|+|||||++.+.+.
T Consensus       138 ~i~ivG~~GsGKTTll~~l~~~  159 (372)
T 2ewv_A          138 LILVTGPTGSGKSTTIASMIDY  159 (372)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999999753

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.35  E-value=0.002  Score=52.00  Aligned_cols=22  Identities=41%  Similarity=0.570  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .++|+|++|||||||++.+.+-
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            4789999999999999999864

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.34  E-value=0.0022  Score=48.28  Aligned_cols=22  Identities=27%  Similarity=0.530  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .++++|++|+|||||++.+.+.
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999864

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.33  E-value=0.0017  Score=51.14  Aligned_cols=23  Identities=26%  Similarity=0.430  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|++|+|||||++.+.+.-
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998653

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.33  E-value=0.0027  Score=49.05  Aligned_cols=24  Identities=21%  Similarity=0.348  Sum_probs=21.3

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHh
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ...-|+|.|++||||||+.+.|..
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999999974

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.32  E-value=0.0029  Score=45.86  Aligned_cols=24  Identities=17%  Similarity=0.501  Sum_probs=21.0

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHh
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ..+.|+|.|++||||||+.+.|..
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999864

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.31  E-value=0.0055  Score=44.48  Aligned_cols=22  Identities=18%  Similarity=0.454  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .+++.|++|+|||+|++.+...
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999988743

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.31  E-value=0.0029  Score=47.82  Aligned_cols=21  Identities=24%  Similarity=0.305  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHH
Q 028251            7 FKYIIIGDTGVGKSCLLLQFT   27 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~   27 (211)
                      ..|+|+|++||||||+.+.|.
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999987

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.30  E-value=0.0026  Score=44.54  Aligned_cols=21  Identities=24%  Similarity=0.240  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHh
Q 028251            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~   28 (211)
                      +|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999999864

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.30  E-value=0.0023  Score=45.27  Aligned_cols=21  Identities=33%  Similarity=0.482  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHHh
Q 028251            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~   28 (211)
                      +|+|+|++||||||+.+.|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            699999999999999998864

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.29  E-value=0.0025  Score=45.38  Aligned_cols=21  Identities=29%  Similarity=0.210  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHHh
Q 028251            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~   28 (211)
                      -.+|+|++|+|||||++.+..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999999864

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.27  E-value=0.0035  Score=48.49  Aligned_cols=24  Identities=25%  Similarity=0.300  Sum_probs=20.9

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHh
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ....|+|+|++|||||||++.|..
T Consensus        30 ~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           30 CPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999988763

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.27  E-value=0.0024  Score=52.03  Aligned_cols=22  Identities=32%  Similarity=0.397  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .|+|+|++|+|||||++.+++.
T Consensus       169 ii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhh
Confidence            4899999999999999999864

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.24  E-value=0.0012  Score=52.56  Aligned_cols=23  Identities=22%  Similarity=0.508  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      -++++|++|||||||++.+.+-.
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999998654

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.23  E-value=0.0031  Score=46.44  Aligned_cols=23  Identities=22%  Similarity=0.494  Sum_probs=20.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHh
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ...|+|+|++||||||+.+.|..
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999998864

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.22  E-value=0.0031  Score=46.66  Aligned_cols=22  Identities=27%  Similarity=0.388  Sum_probs=19.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHh
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      +.|+|.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999863

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.21  E-value=0.0024  Score=52.62  Aligned_cols=23  Identities=22%  Similarity=0.381  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      -.++|+|++|||||||++.|.+-
T Consensus       139 e~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          139 PRVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCc
Confidence            36899999999999999999764

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.18  E-value=0.003  Score=46.51  Aligned_cols=22  Identities=32%  Similarity=0.576  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      -++|+|++|+|||||++.+...
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~~   46 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIAK   46 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4789999999999999998844

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.18  E-value=0.0034  Score=44.51  Aligned_cols=22  Identities=18%  Similarity=0.376  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHh
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ..+.++|++|+|||||+.+|..
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999999875

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.18  E-value=0.0032  Score=46.64  Aligned_cols=23  Identities=30%  Similarity=0.586  Sum_probs=20.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHh
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ...|+|.|++||||||+.+.|..
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999999863

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.17  E-value=0.003  Score=50.36  Aligned_cols=22  Identities=27%  Similarity=0.383  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHh
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      --|+++|++||||||+++.|.+
T Consensus       158 ~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          158 AVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEEcCCCChHHHHHHHHHh
Confidence            4689999999999999999864

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.16  E-value=0.0027  Score=53.02  Aligned_cols=23  Identities=26%  Similarity=0.312  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|++|||||||++.+++.-
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            58999999999999999998643

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.15  E-value=0.0033  Score=47.56  Aligned_cols=21  Identities=29%  Similarity=0.396  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHHh
Q 028251            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~   28 (211)
                      -|+|+|++|||||||.+.|..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            588999999999999999864

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.14  E-value=0.0038  Score=44.26  Aligned_cols=23  Identities=26%  Similarity=0.619  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      -.+++.|++|+|||+|++.+...
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999988743

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.14  E-value=0.0043  Score=44.80  Aligned_cols=25  Identities=24%  Similarity=0.195  Sum_probs=22.2

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhC
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      ....|+|.|++||||||+.+.|...
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC
Confidence            4578999999999999999999865

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.14  E-value=0.0031  Score=49.69  Aligned_cols=23  Identities=22%  Similarity=0.397  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      -.++++|++|+|||||++.+.+.
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            35899999999999999999864

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.14  E-value=0.0033  Score=49.90  Aligned_cols=23  Identities=35%  Similarity=0.431  Sum_probs=21.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      +++|+|++|+|||||++.+.+..
T Consensus        73 ~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           73 RIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999999774

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.13  E-value=0.0022  Score=47.75  Aligned_cols=24  Identities=33%  Similarity=0.555  Sum_probs=21.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhC
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      ..-|+|.|+.|||||||++.|.+.
T Consensus        20 g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           20 PFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhc
Confidence            456899999999999999998865

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.11  E-value=0.0031  Score=46.48  Aligned_cols=23  Identities=22%  Similarity=0.229  Sum_probs=20.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHh
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ...|+|+|++||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999863

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.10  E-value=0.0046  Score=47.25  Aligned_cols=23  Identities=26%  Similarity=0.498  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .++++|++|+|||||++.+.+..
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~~   97 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGEA   97 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             eEEEECCCcChHHHHHHHHHHHc
Confidence            48999999999999999998643

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.10  E-value=0.011  Score=48.37  Aligned_cols=62  Identities=21%  Similarity=0.263  Sum_probs=38.0

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHh------------------CCCCC---CCCCCeeeEEEEEEE--E-ECCEEEEEEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTD------------------KRFQP---VHDLTIGVEFGARMV--T-IDGRPIKLQIW   60 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~------------------~~~~~---~~~~~~~~~~~~~~~--~-~~~~~~~l~l~   60 (211)
                      ...-|.|+|+.++|||+|+|.|+.                  ..|..   ...-|.|+......+  . .++....+.++
T Consensus        66 ~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlll  145 (457)
T 4ido_A           66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM  145 (457)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEE
T ss_pred             ceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEE
Confidence            456677999999999999996641                  12211   111233444322111  1 25667889999


Q ss_pred             eCCCcc
Q 028251           61 DTAGQE   66 (211)
Q Consensus        61 D~~G~~   66 (211)
                      ||.|..
T Consensus       146 DTEG~~  151 (457)
T 4ido_A          146 DTQGTF  151 (457)
T ss_dssp             EECCBT
T ss_pred             eccCCC
Confidence            999954

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.08  E-value=0.0037  Score=44.72  Aligned_cols=21  Identities=19%  Similarity=0.213  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHHh
Q 028251            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~   28 (211)
                      .|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999875

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.06  E-value=0.0037  Score=44.87  Aligned_cols=23  Identities=17%  Similarity=0.286  Sum_probs=20.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHh
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ...|+|.|++||||||+.+.|..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998863

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.06  E-value=0.0042  Score=42.99  Aligned_cols=19  Identities=47%  Similarity=0.677  Sum_probs=17.4

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q 028251            9 YIIIGDTGVGKSCLLLQFT   27 (211)
Q Consensus         9 i~vvG~~~~GKSsli~~l~   27 (211)
                      .+|+|+.|+||||++.++.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5799999999999999975

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.05  E-value=0.0036  Score=51.88  Aligned_cols=22  Identities=27%  Similarity=0.590  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHh
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      --|+|+|++|+|||||++.|.+
T Consensus       294 eVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          294 FVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCcccHHHHHHHHHH
Confidence            4689999999999999999864

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.04  E-value=0.0045  Score=45.03  Aligned_cols=23  Identities=17%  Similarity=-0.010  Sum_probs=20.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHh
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ...|+|.|.+||||||+.+.|..
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            46799999999999999999864

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.04  E-value=0.0026  Score=49.88  Aligned_cols=25  Identities=24%  Similarity=0.425  Sum_probs=21.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCC
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      ..-++|+|+.|||||||++.|.+..
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhhc
Confidence            4467899999999999999999764

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.02  E-value=0.0015  Score=47.77  Aligned_cols=21  Identities=29%  Similarity=0.403  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHHh
Q 028251            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~   28 (211)
                      -|+|.|++||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            489999999999999999864

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.01  E-value=0.0032  Score=47.56  Aligned_cols=25  Identities=16%  Similarity=0.251  Sum_probs=21.6

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhC
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      ....|+++|++||||||+.+.|...
T Consensus        31 ~~~~i~l~G~~GsGKSTla~~L~~~   55 (253)
T 2p5t_B           31 QPIAILLGGQSGAGKTTIHRIKQKE   55 (253)
T ss_dssp             SCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            4568999999999999999998753

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.01  E-value=0.0056  Score=43.73  Aligned_cols=23  Identities=22%  Similarity=0.326  Sum_probs=20.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHh
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ...|+++|.+|+||||+.+.|..
T Consensus        13 ~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           13 GIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            45789999999999999999864

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.01  E-value=0.0044  Score=44.59  Aligned_cols=23  Identities=26%  Similarity=0.346  Sum_probs=20.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHh
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ...|+|.|++||||||+.+.|..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998864

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.00  E-value=0.0045  Score=43.95  Aligned_cols=23  Identities=17%  Similarity=0.330  Sum_probs=20.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHh
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ...|+++|.+|+||||+.+.|..
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999999875

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.00  E-value=0.0044  Score=45.59  Aligned_cols=22  Identities=27%  Similarity=0.400  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHh
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      +.|+|+|++||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999864

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.00  E-value=0.0042  Score=52.29  Aligned_cols=23  Identities=26%  Similarity=0.333  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|++|+|||||++.+.+..
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998754

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=95.97  E-value=0.004  Score=48.05  Aligned_cols=22  Identities=23%  Similarity=0.366  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      -++|+|++|+|||||++.+.+.
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4789999999999999998764

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=95.96  E-value=0.0045  Score=43.51  Aligned_cols=22  Identities=14%  Similarity=0.297  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHh
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ..|+|.|++||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999998864

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.96  E-value=0.0038  Score=52.52  Aligned_cols=23  Identities=26%  Similarity=0.450  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      -++|+|++|+|||||++.|.+.-
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999998753

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=95.95  E-value=0.0048  Score=45.60  Aligned_cols=20  Identities=20%  Similarity=0.448  Sum_probs=17.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 028251            9 YIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         9 i~vvG~~~~GKSsli~~l~~   28 (211)
                      |+|+|+|||||+|...+|..
T Consensus        32 I~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           32 IFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             EEEECCTTCCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56799999999999988863

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=95.92  E-value=0.0044  Score=51.26  Aligned_cols=21  Identities=29%  Similarity=0.453  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHHh
Q 028251            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~   28 (211)
                      .++|+|++|+|||||++.+.+
T Consensus        31 ~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHhc
Confidence            578999999999999999864

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=95.92  E-value=0.0042  Score=44.24  Aligned_cols=22  Identities=27%  Similarity=0.407  Sum_probs=19.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHh
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ..|+|+|++||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3599999999999999998864

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=95.91  E-value=0.005  Score=45.76  Aligned_cols=22  Identities=14%  Similarity=0.169  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      -++|+|++|+|||||+..+...
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4789999999999999999874

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=95.90  E-value=0.0052  Score=45.93  Aligned_cols=24  Identities=21%  Similarity=0.218  Sum_probs=20.6

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHh
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ..+.|+|.|++|+||||+.+.|..
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998863

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=95.87  E-value=0.0052  Score=44.89  Aligned_cols=21  Identities=29%  Similarity=0.208  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHHh
Q 028251            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~   28 (211)
                      -++++|++|+|||||+..+..
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            479999999999999999987

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=95.86  E-value=0.0052  Score=46.30  Aligned_cols=24  Identities=21%  Similarity=0.368  Sum_probs=20.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhC
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      ...++++|++|+|||+|++.+...
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            346999999999999999999754

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.86  E-value=0.0048  Score=52.66  Aligned_cols=23  Identities=30%  Similarity=0.497  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|++|+|||||++.|.+..
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            47999999999999999998754

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=95.85  E-value=0.0058  Score=46.32  Aligned_cols=22  Identities=32%  Similarity=0.468  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHh
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ..|++.|.+||||||+.+.|..
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            5799999999999999999874

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=95.83  E-value=0.006  Score=45.36  Aligned_cols=23  Identities=17%  Similarity=0.390  Sum_probs=20.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHh
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ...|+|+|++||||||+.+.|..
T Consensus        16 ~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           16 GVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999999864

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=95.82  E-value=0.0053  Score=50.27  Aligned_cols=23  Identities=30%  Similarity=0.408  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      +++|+|++|+|||||++.+.+..
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            68999999999999999998764

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=95.81  E-value=0.0063  Score=42.65  Aligned_cols=21  Identities=33%  Similarity=0.469  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHHh
Q 028251            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~   28 (211)
                      .|+|.|.+||||||+.+.|..
T Consensus         9 ~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            9 HLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998854

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=95.80  E-value=0.0045  Score=43.73  Aligned_cols=24  Identities=33%  Similarity=0.530  Sum_probs=20.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhC
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .-.++|.|++|+|||+|++.+...
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999988643

>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}

Probab=95.79  E-value=0.0048  Score=45.78  Aligned_cols=24  Identities=8%  Similarity=-0.087  Sum_probs=19.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      +-|+..|+++.||++|++++.+..
T Consensus        30 ilvl~~~~~~~~~~~~~~~lf~~~   53 (233)
T 3uc9_A           30 ILVLSDHPHNFLKTQFLQDLFHCS   53 (233)
T ss_dssp             EEEEEEGGGHHHHHHHHHHHHCCC
T ss_pred             eEEEecCcccccHHHHHHHHhccc
Confidence            444444999999999999999663

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=95.78  E-value=0.0064  Score=44.87  Aligned_cols=24  Identities=13%  Similarity=0.224  Sum_probs=20.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhC
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .-.++|.|++|+|||+|++.+...
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            356899999999999999988743

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=95.78  E-value=0.0057  Score=46.21  Aligned_cols=22  Identities=18%  Similarity=0.253  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHh
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      -.|+|+|++|+||||+.+.|..
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999864

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=95.75  E-value=0.0053  Score=52.14  Aligned_cols=22  Identities=27%  Similarity=0.407  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .++++|++|+|||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~  392 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRF  392 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhhc
Confidence            5899999999999999998864

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=95.74  E-value=0.0071  Score=43.73  Aligned_cols=23  Identities=30%  Similarity=0.476  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      ..+++.|++|+|||+|++.+...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999998754

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=95.73  E-value=0.0065  Score=44.42  Aligned_cols=23  Identities=22%  Similarity=0.307  Sum_probs=20.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHh
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ...|+++|.+|+||||+.+.|..
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999998864

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=95.72  E-value=0.004  Score=44.22  Aligned_cols=23  Identities=26%  Similarity=0.210  Sum_probs=16.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHh
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ...|+|.|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999864

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=95.71  E-value=0.0067  Score=45.14  Aligned_cols=25  Identities=16%  Similarity=0.214  Sum_probs=21.3

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhC
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      ...-|++.|++||||||+++.|...
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            3457999999999999999998754

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=95.70  E-value=0.006  Score=51.81  Aligned_cols=22  Identities=32%  Similarity=0.484  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .++++|++|+|||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~  392 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRF  392 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999865

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.66  E-value=0.0063  Score=51.93  Aligned_cols=23  Identities=22%  Similarity=0.323  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|++|+|||||++.+.+..
T Consensus       119 ~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            57999999999999999998754

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=95.65  E-value=0.0067  Score=48.68  Aligned_cols=22  Identities=18%  Similarity=0.312  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHh
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      -.++++|++|+|||||++.+.+
T Consensus       170 ~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          170 RYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4689999999999999999985

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=95.65  E-value=0.0067  Score=48.45  Aligned_cols=19  Identities=32%  Similarity=0.567  Sum_probs=17.5

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q 028251            9 YIIIGDTGVGKSCLLLQFT   27 (211)
Q Consensus         9 i~vvG~~~~GKSsli~~l~   27 (211)
                      .+|+|++|+|||||++.++
T Consensus        26 ~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5699999999999999986

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=95.64  E-value=0.0093  Score=46.00  Aligned_cols=22  Identities=32%  Similarity=0.371  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHh
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ..|++.|++||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999975

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.64  E-value=0.0072  Score=50.85  Aligned_cols=23  Identities=22%  Similarity=0.424  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|++|+|||||++.+.+..
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999999754

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.59  E-value=0.0065  Score=51.08  Aligned_cols=23  Identities=22%  Similarity=0.349  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|++|+|||||++.+.+..
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998754

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.59  E-value=0.0076  Score=51.44  Aligned_cols=23  Identities=22%  Similarity=0.424  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|++|+|||||++.|.+..
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999999754

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=95.54  E-value=0.036  Score=39.87  Aligned_cols=84  Identities=10%  Similarity=-0.013  Sum_probs=54.4

Q ss_pred             EEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEecCCCCCCCCCCHH
Q 028251           55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA--NPNMSIMLVGNKCDLAHRRAVSKE  132 (211)
Q Consensus        55 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~  132 (211)
                      +.+.++|+|+..  .......+..+|.+|+++..+...  ..+..++..+....  ..+.++.+|+|+.|....  . ..
T Consensus        76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~--~-~~  148 (206)
T 4dzz_A           76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT--M-LN  148 (206)
T ss_dssp             SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE--E-EH
T ss_pred             CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch--H-HH
Confidence            567899999866  344556677899999999876554  55556666665443  245788999999985321  1 23


Q ss_pred             HHHHHHHHcCCcE
Q 028251          133 EGEQFAKENGLLF  145 (211)
Q Consensus       133 ~~~~~~~~~~~~~  145 (211)
                      +..+.....+.++
T Consensus       149 ~~~~~l~~~~~~v  161 (206)
T 4dzz_A          149 VLKESIKDTGVKA  161 (206)
T ss_dssp             HHHHHHHHHTCCB
T ss_pred             HHHHHHHHcCCce
Confidence            3444444445443

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=95.52  E-value=0.0078  Score=46.03  Aligned_cols=21  Identities=33%  Similarity=0.439  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHHh
Q 028251            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~   28 (211)
                      -++|+|++|+|||||+..+..
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999999875

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=95.52  E-value=0.0087  Score=45.96  Aligned_cols=23  Identities=26%  Similarity=0.374  Sum_probs=20.6

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHH
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFT   27 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~   27 (211)
                      ....|+|.|++||||||+.+.|.
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            35679999999999999999987

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=95.47  E-value=0.009  Score=43.88  Aligned_cols=21  Identities=29%  Similarity=0.605  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHHh
Q 028251            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~   28 (211)
                      -++|.|++|+|||+|++.+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999864

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=95.43  E-value=0.011  Score=42.75  Aligned_cols=24  Identities=25%  Similarity=0.321  Sum_probs=21.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhC
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      ...|+|.|..||||||+.+.|...
T Consensus        12 ~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           12 HMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            467999999999999999988753

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=95.41  E-value=0.009  Score=45.94  Aligned_cols=24  Identities=21%  Similarity=0.328  Sum_probs=21.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhC
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      ...+++.|++|+|||+|++.+...
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            357999999999999999999864

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=95.41  E-value=0.01  Score=40.69  Aligned_cols=25  Identities=12%  Similarity=0.069  Sum_probs=21.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCC
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      ...|++.|++|+|||++.+.+....
T Consensus        24 ~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           24 DIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHhC
Confidence            4569999999999999999997543

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.39  E-value=0.009  Score=50.98  Aligned_cols=23  Identities=22%  Similarity=0.511  Sum_probs=20.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCC
Q 028251            9 YIIIGDTGVGKSCLLLQFTDKRF   31 (211)
Q Consensus         9 i~vvG~~~~GKSsli~~l~~~~~   31 (211)
                      ++|+|++|+|||||++.+.+...
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~~  403 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGALK  403 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSSC
T ss_pred             EEEECCCCCcHHHHHHHHhcCCC
Confidence            79999999999999999987643

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.38  E-value=0.0061  Score=51.95  Aligned_cols=22  Identities=27%  Similarity=0.452  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .++++|++|+|||||++.+.+-
T Consensus       383 ~~~ivG~sGsGKSTll~~l~g~  404 (598)
T 3qf4_B          383 KVALVGPTGSGKTTIVNLLMRF  404 (598)
T ss_dssp             EEEEECCTTSSTTHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            6899999999999999998854

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=95.37  E-value=0.0096  Score=45.46  Aligned_cols=24  Identities=21%  Similarity=0.311  Sum_probs=21.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhC
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .-.+++.|++|+|||+|++.+...
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            346999999999999999999754

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=95.36  E-value=0.11  Score=40.41  Aligned_cols=21  Identities=14%  Similarity=0.243  Sum_probs=16.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 028251            9 YIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         9 i~vvG~~~~GKSsli~~l~~~   29 (211)
                      +++.|++|+|||++++.+...
T Consensus        51 ~L~~G~~G~GKT~la~~la~~   71 (324)
T 3u61_B           51 ILHSPSPGTGKTTVAKALCHD   71 (324)
T ss_dssp             EEECSSTTSSHHHHHHHHHHH
T ss_pred             EEeeCcCCCCHHHHHHHHHHH
Confidence            455566999999999999754

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=95.35  E-value=0.013  Score=42.33  Aligned_cols=21  Identities=24%  Similarity=0.251  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHHh
Q 028251            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~   28 (211)
                      .|+|.|++||||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999999864

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=95.34  E-value=0.011  Score=44.51  Aligned_cols=24  Identities=21%  Similarity=0.339  Sum_probs=20.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhC
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      ...+++.|++|+|||+|++.+...
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~~   62 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVATE   62 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            345899999999999999999753

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=95.32  E-value=0.0053  Score=52.10  Aligned_cols=22  Identities=27%  Similarity=0.333  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .++++|++|+|||||++.+.+-
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g~  390 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPRF  390 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            5899999999999999877754

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=95.31  E-value=0.01  Score=45.95  Aligned_cols=23  Identities=22%  Similarity=0.371  Sum_probs=20.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      -.|++.|++|+|||+|++.+...
T Consensus        50 ~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           50 KGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCcCHHHHHHHHHHH
Confidence            35899999999999999999864

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=95.31  E-value=0.011  Score=42.98  Aligned_cols=20  Identities=45%  Similarity=0.609  Sum_probs=17.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHH
Q 028251            8 KYIIIGDTGVGKSCLLLQFT   27 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~   27 (211)
                      -.+|+|+.|+||||++.++.
T Consensus        25 ~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           25 INLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEcCCCCCHHHHHHHHH
Confidence            35789999999999999874

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=95.29  E-value=0.01  Score=45.96  Aligned_cols=85  Identities=12%  Similarity=0.024  Sum_probs=47.0

Q ss_pred             EEEEEEeCCCccchhhc----hHHHhc--cccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCC
Q 028251           55 IKLQIWDTAGQESFRSI----TRSYYR--GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA  128 (211)
Q Consensus        55 ~~l~l~D~~G~~~~~~~----~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  128 (211)
                      ..+.|.||+|.......    ....+.  ..+.+++|+|+...  ...+..+...+..   -+ ..-++.||.|....  
T Consensus       183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~---l~-~~giVltk~D~~~~--  254 (296)
T 2px0_A          183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSS---VP-VNQYIFTKIDETTS--  254 (296)
T ss_dssp             SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSS---SC-CCEEEEECTTTCSC--
T ss_pred             CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhc---CC-CCEEEEeCCCcccc--
Confidence            46789999996643321    112222  35678889987643  2233333222221   12 23566799997532  


Q ss_pred             CCHHHHHHHHHHcCCcEEEEe
Q 028251          129 VSKEEGEQFAKENGLLFLEAS  149 (211)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~s  149 (211)
                        ...+.......+.++..+.
T Consensus       255 --~g~~~~~~~~~~~pi~~i~  273 (296)
T 2px0_A          255 --LGSVFNILAESKIGVGFMT  273 (296)
T ss_dssp             --CHHHHHHHHTCSCCCSEEC
T ss_pred             --hhHHHHHHHHHCcCEEEEE
Confidence              2345566667788765554

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.23  E-value=0.007  Score=51.46  Aligned_cols=22  Identities=32%  Similarity=0.481  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .++++|++|+|||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~  392 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPRL  392 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999988754

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=95.22  E-value=0.011  Score=46.07  Aligned_cols=23  Identities=30%  Similarity=0.433  Sum_probs=20.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      -.+++.|++|+|||+|++.+...
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~~   60 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGNE   60 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            46899999999999999998753

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=95.20  E-value=0.012  Score=45.44  Aligned_cols=24  Identities=29%  Similarity=0.164  Sum_probs=20.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhC
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      +..+++.|++|+|||+|.+.+...
T Consensus        36 p~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           36 PLILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            346778899999999999998754

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.15  E-value=0.012  Score=46.74  Aligned_cols=23  Identities=22%  Similarity=0.237  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      -+.|+|++|+|||||++.+....
T Consensus       133 i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          133 ITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999998653

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.15  E-value=0.01  Score=43.33  Aligned_cols=21  Identities=24%  Similarity=0.414  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHHh
Q 028251            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~   28 (211)
                      .+++.||+|+|||+++.++..
T Consensus        60 ~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999888864

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.14  E-value=0.016  Score=45.39  Aligned_cols=23  Identities=26%  Similarity=0.447  Sum_probs=20.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      ..|+|+|++|+|||||...|...
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~   28 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADA   28 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999998743

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.11  E-value=0.01  Score=46.73  Aligned_cols=21  Identities=19%  Similarity=0.480  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHh
Q 028251            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~   28 (211)
                      .+++.|++|+||||+++.+.+
T Consensus        38 ~~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           38 HLLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             CEEEECSTTSSHHHHHHTHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            399999999999999999876

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.11  E-value=0.013  Score=42.62  Aligned_cols=24  Identities=38%  Similarity=0.634  Sum_probs=21.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      ..|+|+|++|+|||+|...|....
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            468999999999999999998553

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=95.10  E-value=0.014  Score=45.50  Aligned_cols=85  Identities=20%  Similarity=0.083  Sum_probs=47.2

Q ss_pred             EEEEEeCCCccchhhch-------HHH-----hccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCC
Q 028251           56 KLQIWDTAGQESFRSIT-------RSY-----YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL  123 (211)
Q Consensus        56 ~l~l~D~~G~~~~~~~~-------~~~-----~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  123 (211)
                      .+.+.|+||........       ...     ....+.+++|+|....  ...+... ..+...   -...-+++||.|.
T Consensus       188 dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~a-~~~~~~---~~i~gvVlTk~D~  261 (306)
T 1vma_A          188 DVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQA-KIFKEA---VNVTGIILTKLDG  261 (306)
T ss_dssp             SEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHH-HHHHHH---SCCCEEEEECGGG
T ss_pred             CEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHHH-HHHHhc---CCCCEEEEeCCCC
Confidence            47899999963222211       111     1347888999998643  1222221 222222   1234567899996


Q ss_pred             CCCCCCCHHHHHHHHHHcCCcEEEEeC
Q 028251          124 AHRRAVSKEEGEQFAKENGLLFLEASA  150 (211)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~s~  150 (211)
                      ...    ...+.......+.|+.++..
T Consensus       262 ~~~----gG~~l~~~~~~~~Pi~~i~~  284 (306)
T 1vma_A          262 TAK----GGITLAIARELGIPIKFIGV  284 (306)
T ss_dssp             CSC----TTHHHHHHHHHCCCEEEEEC
T ss_pred             ccc----hHHHHHHHHHHCCCEEEEeC
Confidence            432    12355666778888877754

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=95.09  E-value=0.19  Score=37.14  Aligned_cols=90  Identities=12%  Similarity=0.114  Sum_probs=59.5

Q ss_pred             EEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHH
Q 028251           55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEG  134 (211)
Q Consensus        55 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~  134 (211)
                      +.+.|+|+|+..  .......+..+|.+|+++... ..+...+..++..+.........+.+|+|+.+...  ....++ 
T Consensus       119 yD~viiD~p~~~--~~~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~--~~~~~~-  192 (245)
T 3ea0_A          119 YDYIIVDFGASI--DHVGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS--RITSDE-  192 (245)
T ss_dssp             CSEEEEEEESSC--CTTHHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT--TSCHHH-
T ss_pred             CCEEEEeCCCCC--chHHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC--CCCHHH-
Confidence            567899998854  234566778899999999875 55666677777777655433456889999998643  233333 


Q ss_pred             HHHHHHcCCcEEEEeCCC
Q 028251          135 EQFAKENGLLFLEASART  152 (211)
Q Consensus       135 ~~~~~~~~~~~~~~s~~~  152 (211)
                        +.+..+.+++..-..+
T Consensus       193 --~~~~~~~~v~~~ip~~  208 (245)
T 3ea0_A          193 --IEKVIGRPISKRIPQD  208 (245)
T ss_dssp             --HHHHHTSCEEEEECCC
T ss_pred             --HHHHhCCCeEEECCCC
Confidence              3334677776654443

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=95.09  E-value=0.013  Score=43.45  Aligned_cols=21  Identities=29%  Similarity=0.416  Sum_probs=18.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHHh
Q 028251            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~   28 (211)
                      -++|+|++|+|||||+..+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999877753

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=95.09  E-value=0.0065  Score=46.92  Aligned_cols=27  Identities=26%  Similarity=0.297  Sum_probs=18.4

Q ss_pred             CCCCceeeEEEEcCCCCCHHHHHHHHHh
Q 028251            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      |+. ..+.|+|.|+.||||||+.+.|..
T Consensus         1 Ms~-~~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            1 MSK-KHPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             -CT-TSCEEEEESCC---CCTHHHHHHH
T ss_pred             CCC-CceEEEEECCCCCCHHHHHHHHHH
Confidence            554 345699999999999999998864

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=95.08  E-value=0.014  Score=54.32  Aligned_cols=21  Identities=24%  Similarity=0.526  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHHh
Q 028251            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~   28 (211)
                      +|+|||++|+|||||++.|.+
T Consensus      1107 ~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A         1107 TLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp             EEEEECSTTSSTTSHHHHHTT
T ss_pred             EEEEECCCCChHHHHHHHHhc
Confidence            689999999999999998883

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=95.07  E-value=0.015  Score=52.13  Aligned_cols=24  Identities=33%  Similarity=0.585  Sum_probs=21.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRF   31 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~   31 (211)
                      .++|+|++|+|||||++.+.++..
T Consensus       463 ~v~LiGpNGsGKSTLLk~LagG~i  486 (986)
T 2iw3_A          463 RYGICGPNGCGKSTLMRAIANGQV  486 (986)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            479999999999999999996543

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.05  E-value=0.013  Score=46.42  Aligned_cols=24  Identities=29%  Similarity=0.333  Sum_probs=20.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhC
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .-.++|.|++|+|||+|++.+...
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999998753

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=95.04  E-value=0.017  Score=42.96  Aligned_cols=24  Identities=21%  Similarity=0.195  Sum_probs=20.8

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHh
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ....|+|+|++|+||||+.+.|..
T Consensus        15 ~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           15 KTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999998864

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=95.04  E-value=0.016  Score=43.06  Aligned_cols=23  Identities=22%  Similarity=0.439  Sum_probs=19.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHh
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      .+++.|+|++||||||+.++|..
T Consensus         8 ~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            8 HMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             -CEEEEECCTTSCHHHHHHHHHH
T ss_pred             ccceeeECCCCCCHHHHHHHHHH
Confidence            57899999999999999998853

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=95.00  E-value=0.015  Score=44.82  Aligned_cols=21  Identities=24%  Similarity=0.566  Sum_probs=18.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHH
Q 028251            7 FKYIIIGDTGVGKSCLLLQFT   27 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~   27 (211)
                      ..+++.|++|+|||++++.+.
T Consensus        68 ~~vll~G~~GtGKT~la~~la   88 (309)
T 3syl_A           68 LHMSFTGNPGTGKTTVALKMA   88 (309)
T ss_dssp             CEEEEEECTTSSHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHH
Confidence            469999999999999998665

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=94.98  E-value=0.052  Score=42.41  Aligned_cols=23  Identities=22%  Similarity=0.319  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      ..+++.|++|+|||+|++.+...
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            46999999999999999999754

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=94.98  E-value=0.013  Score=47.57  Aligned_cols=23  Identities=22%  Similarity=0.254  Sum_probs=20.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHh
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ..-|+++|++||||||+.++|..
T Consensus       258 ~~lIil~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          258 PEVVVAVGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHTG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45688999999999999999875

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=94.95  E-value=0.023  Score=45.08  Aligned_cols=23  Identities=30%  Similarity=0.551  Sum_probs=19.8

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHH
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFT   27 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~   27 (211)
                      ...+|+++|++|+||||+.+.|.
T Consensus        23 ~~~~i~l~G~~G~GKTTl~~~la   45 (359)
T 2ga8_A           23 YRVCVILVGSPGSGKSTIAEELC   45 (359)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CeeEEEEECCCCCcHHHHHHHHH
Confidence            34679999999999999998765

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=94.94  E-value=0.015  Score=46.18  Aligned_cols=22  Identities=23%  Similarity=0.469  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .++|.|++|+|||+|++.+...
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999998854

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=94.93  E-value=0.022  Score=43.27  Aligned_cols=25  Identities=20%  Similarity=0.360  Sum_probs=21.7

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhC
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      ....+++.|++|+|||+|++.+...
T Consensus        63 ~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           63 PLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            4567999999999999999999764

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.93  E-value=0.015  Score=45.70  Aligned_cols=22  Identities=18%  Similarity=0.520  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .+++.|++|+||||+++.+...
T Consensus        48 ~~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999998754

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=94.89  E-value=0.017  Score=44.48  Aligned_cols=24  Identities=29%  Similarity=0.451  Sum_probs=20.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhC
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      ...+++.|++|+|||++++.+...
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~   73 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKL   73 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            346999999999999999998753

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=94.88  E-value=0.022  Score=44.96  Aligned_cols=22  Identities=32%  Similarity=0.579  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHh
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      .-|+|.|++|||||||...|..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            4689999999999999998864

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=94.85  E-value=0.017  Score=44.58  Aligned_cols=23  Identities=30%  Similarity=0.528  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      -.++++|++|+|||++++.+...
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHH
Confidence            36999999999999999998754

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.85  E-value=0.017  Score=47.08  Aligned_cols=23  Identities=22%  Similarity=0.421  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      -.|++.||||+|||+|++++...
T Consensus       207 rGiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          207 RGVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             CEEEEESCTTTTHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            35999999999999999999854

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=94.83  E-value=0.019  Score=44.78  Aligned_cols=23  Identities=26%  Similarity=0.346  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .-|+|+||+|||||+|...|...
T Consensus         4 ~~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            4 KLVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             cEEEEECCCcCCHHHHHHHHHHh
Confidence            45889999999999999999754

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=94.83  E-value=0.023  Score=44.17  Aligned_cols=23  Identities=22%  Similarity=0.423  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .-|+|+||+|||||+|...|...
T Consensus        11 ~~i~i~GptgsGKt~la~~La~~   33 (316)
T 3foz_A           11 KAIFLMGPTASGKTALAIELRKI   33 (316)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCccCHHHHHHHHHHh
Confidence            45789999999999999999743

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=94.81  E-value=0.017  Score=45.22  Aligned_cols=23  Identities=26%  Similarity=0.408  Sum_probs=20.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      -.|++.|++|+|||+|++.+...
T Consensus        46 ~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHHH
Confidence            46999999999999999999864

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=94.80  E-value=0.024  Score=42.02  Aligned_cols=28  Identities=14%  Similarity=0.019  Sum_probs=21.5

Q ss_pred             CCCCceeeEEEEcCCCCCHHHHHHHHHh
Q 028251            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      |......-|++.|..|+||||+++.|..
T Consensus        16 ~~~~~~~~i~~~G~~g~GKst~~~~l~~   43 (223)
T 3ld9_A           16 TQGPGSMFITFEGIDGSGKTTQSHLLAE   43 (223)
T ss_dssp             ---CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3444567799999999999999998863

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.80  E-value=0.018  Score=47.06  Aligned_cols=24  Identities=21%  Similarity=0.272  Sum_probs=21.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhC
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      +-.|++.||||+|||.|.+++.+.
T Consensus       215 prGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          215 PKGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCeeEEECcCCCCHHHHHHHHHHH
Confidence            457999999999999999999864

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=94.76  E-value=0.018  Score=45.34  Aligned_cols=19  Identities=47%  Similarity=0.677  Sum_probs=17.0

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q 028251            9 YIIIGDTGVGKSCLLLQFT   27 (211)
Q Consensus         9 i~vvG~~~~GKSsli~~l~   27 (211)
                      .+|+|++|+|||+|+.++.
T Consensus        26 ~~i~G~NGsGKS~lleAi~   44 (339)
T 3qkt_A           26 NLIIGQNGSGKSSLLDAIL   44 (339)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3799999999999999874

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=94.75  E-value=0.0092  Score=53.47  Aligned_cols=23  Identities=35%  Similarity=0.563  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|++|+|||||++.|.+..
T Consensus       701 ivaIiGpNGSGKSTLLklLaGll  723 (986)
T 2iw3_A          701 RIAVIGPNGAGKSTLINVLTGEL  723 (986)
T ss_dssp             EEEECSCCCHHHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998753

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=94.75  E-value=0.02  Score=45.08  Aligned_cols=22  Identities=32%  Similarity=0.607  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      -|+|+|++|+|||+|...|...
T Consensus        42 lIvI~GPTgsGKTtLa~~LA~~   63 (339)
T 3a8t_A           42 LLVLMGATGTGKSRLSIDLAAH   63 (339)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999743

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.69  E-value=0.02  Score=46.83  Aligned_cols=24  Identities=21%  Similarity=0.286  Sum_probs=21.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhC
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      +-.|++.||||+|||+|++++...
T Consensus       215 prGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          215 PKGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            457999999999999999999854

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=94.67  E-value=0.021  Score=44.58  Aligned_cols=23  Identities=26%  Similarity=0.390  Sum_probs=20.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      ..+++.|++|+|||+|++.+...
T Consensus        52 ~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           52 SGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             CEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            46999999999999999999754

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=94.64  E-value=0.0051  Score=45.80  Aligned_cols=22  Identities=27%  Similarity=0.431  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q 028251            9 YIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         9 i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      ++|+|++|+|||||++.+.+..
T Consensus        30 ~~i~GpnGsGKSTll~~i~g~~   51 (227)
T 1qhl_A           30 TTLSGGNGAGKSTTMAAFVTAL   51 (227)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhccc
Confidence            4678999999999999998654

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=94.60  E-value=0.019  Score=48.10  Aligned_cols=20  Identities=25%  Similarity=0.630  Sum_probs=0.0

Q ss_pred             EEEEcCCCCCHHHHHHH--HHh
Q 028251            9 YIIIGDTGVGKSCLLLQ--FTD   28 (211)
Q Consensus         9 i~vvG~~~~GKSsli~~--l~~   28 (211)
                      ++|+|++|+|||||++.  +.+
T Consensus        42 ~~l~G~nGsGKSTL~~~~ll~G   63 (525)
T 1tf7_A           42 TLVSGTSGTGKTLFSIQFLYNG   63 (525)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHHHH

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=94.58  E-value=0.023  Score=40.56  Aligned_cols=21  Identities=19%  Similarity=0.249  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 028251            9 YIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         9 i~vvG~~~~GKSsli~~l~~~   29 (211)
                      ++|+|+++||||+|..+|...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            789999999999999999854

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.57  E-value=0.022  Score=44.77  Aligned_cols=22  Identities=27%  Similarity=0.591  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .+++.|++|+|||++++.+...
T Consensus        60 ~~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           60 HMLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999998754

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=94.54  E-value=0.023  Score=45.27  Aligned_cols=21  Identities=33%  Similarity=0.287  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHHh
Q 028251            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~   28 (211)
                      -++++|++|+|||||++.+..
T Consensus        28 ~~~i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           28 VTGIYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHH
Confidence            578999999999999999874

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=94.51  E-value=0.03  Score=39.77  Aligned_cols=24  Identities=33%  Similarity=0.577  Sum_probs=21.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .-|++.|++|+||||+...|....
T Consensus        17 ~gvli~G~SGaGKStlal~L~~rG   40 (181)
T 3tqf_A           17 MGVLITGEANIGKSELSLALIDRG   40 (181)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcC
Confidence            458999999999999999998653

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.51  E-value=0.023  Score=45.89  Aligned_cols=24  Identities=25%  Similarity=0.318  Sum_probs=21.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhC
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      +-.|++.||||+|||.|.+++.+.
T Consensus       182 prGvLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          182 PKGVILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             CCCEEEESCSSSSHHHHHHHHHHH
T ss_pred             CCceEEeCCCCCCHHHHHHHHHHh
Confidence            346999999999999999999854

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=94.50  E-value=0.022  Score=46.38  Aligned_cols=21  Identities=33%  Similarity=0.360  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHHh
Q 028251            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~   28 (211)
                      -++|+|++|+|||||++.+.+
T Consensus        28 ~~~i~G~nG~GKstll~ai~~   48 (430)
T 1w1w_A           28 FTSIIGPNGSGKSNMMDAISF   48 (430)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            368999999999999999874

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=94.50  E-value=0.02  Score=45.44  Aligned_cols=25  Identities=20%  Similarity=0.239  Sum_probs=21.1

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhC
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      ..-.++|.|++|+|||+|++.+...
T Consensus        43 ~~~~vll~G~~G~GKT~l~~~~~~~   67 (387)
T 2v1u_A           43 KPSNALLYGLTGTGKTAVARLVLRR   67 (387)
T ss_dssp             CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHH
Confidence            3457899999999999999998743

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=94.48  E-value=0.022  Score=48.01  Aligned_cols=22  Identities=27%  Similarity=0.445  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .++++|++|+|||||++.+...
T Consensus       110 ~vll~Gp~GtGKTtlar~ia~~  131 (543)
T 3m6a_A          110 ILCLAGPPGVGKTSLAKSIAKS  131 (543)
T ss_dssp             EEEEESSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            5899999999999999998754

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=94.48  E-value=0.026  Score=43.91  Aligned_cols=23  Identities=35%  Similarity=0.530  Sum_probs=20.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHh
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      .-.+++.|++|+|||+|+..+..
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~  174 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAH  174 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998874

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=94.48  E-value=0.01  Score=44.85  Aligned_cols=23  Identities=22%  Similarity=0.408  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      ..+++.|++|+|||+|++.+...
T Consensus        45 ~~vll~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A           45 KGVLLVGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             SCCCCBCSSCSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHHHH
Confidence            34889999999999999999753

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=94.45  E-value=0.023  Score=45.03  Aligned_cols=22  Identities=23%  Similarity=0.555  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .+++.|++|+|||+|++.+...
T Consensus        72 ~vLl~GppGtGKT~la~~la~~   93 (368)
T 3uk6_A           72 AVLIAGQPGTGKTAIAMGMAQA   93 (368)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999998744

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=94.42  E-value=0.015  Score=49.06  Aligned_cols=24  Identities=29%  Similarity=0.427  Sum_probs=20.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhC
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      ...|+|+|++|||||||.+.|.+.
T Consensus       369 G~iI~LiG~sGSGKSTLar~La~~  392 (552)
T 3cr8_A          369 GFTVFFTGLSGAGKSTLARALAAR  392 (552)
T ss_dssp             CEEEEEEESSCHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCChHHHHHHHHHHh
Confidence            357899999999999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	211
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	3e-62
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	3e-57
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	1e-55
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	4e-55
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	9e-55
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	1e-54
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	2e-54
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	4e-54
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	3e-53
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	8e-53
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	5e-51
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	1e-50
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	8e-47
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	1e-43
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	1e-42
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	6e-40
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	1e-39
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	3e-39
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	4e-39
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	2e-38
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	4e-38
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	6e-38
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	1e-37
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	2e-37
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	7e-36
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	7e-36
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	1e-35
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	3e-35
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	6e-35
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	5e-34
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	2e-33
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	9e-33
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	1e-32
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	1e-32
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	4e-32
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	8e-31
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	1e-30
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-30
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	2e-30
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	3e-30
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	4e-28
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	7e-27
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	3e-26
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	5e-26
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	1e-25
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	2e-25
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	2e-25
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	1e-23
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	8e-23
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	9e-23
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	1e-22
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	2e-22
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	2e-21
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	9e-19
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	5e-18
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	9e-17
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	5e-12
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	5e-11
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	1e-07
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	2e-06
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	4e-06
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	4e-06
d1egaa1	179	c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {	5e-06
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	7e-05
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	8e-05
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	2e-04
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	3e-04
d1svia_	195	c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti	3e-04
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	9e-04
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	0.003

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  189 bits (481), Expect = 3e-62
 Identities = 82/172 (47%), Positives = 122/172 (70%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           +YDYLFK ++IGD+GVGK+C+L +F++  F      TIG++F  R + +DG+ IKLQIWD
Sbjct: 2   TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWD 61

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE FR+IT +YYRGA G +LVYDIT  ++F+++ +W+ +  +HA+ ++  M++GNKC
Sbjct: 62  TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKC 121

Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 173
           D+  +R VSKE GE+ A + G+ F+E SA+   NVE AF   A  I   + +
Sbjct: 122 DVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDK 173

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  176 bits (447), Expect = 3e-57
 Identities = 76/169 (44%), Positives = 119/169 (70%), Gaps = 1/169 (0%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-DLTIGVEFGARMVTIDGRPIKLQIW 60
            YD  FK +++GD+GVGK+CLL++F D  F       T+G++F  +++ +DG  +KLQ+W
Sbjct: 2   FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMW 61

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
           DTAGQE FRS+T +YYR A   LL+YD+T + +F+++ +WL +  ++A  ++++ML+GNK
Sbjct: 62  DTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNK 121

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
            D AH R V +E+GE+ AKE GL F+E SA+T  NV+ AF   A ++ +
Sbjct: 122 VDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKR 170

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  172 bits (437), Expect = 1e-55
 Identities = 80/166 (48%), Positives = 112/166 (67%), Gaps = 1/166 (0%)

Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           + K ++IGD+GVGKSCLL++F + +F P    TIG++F  + V I+G+ +KLQIWDTAGQ
Sbjct: 2   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 61

Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125
           E FR+IT +YYRGA G +LVYDIT   TF ++  W +   +HAN    ++LVGNK D+  
Sbjct: 62  ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-E 120

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNI 171
            R V+ ++GE  AKE G+ F+E+SA+   NV E F   A  I + I
Sbjct: 121 TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 166

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  171 bits (435), Expect = 4e-55
 Identities = 84/181 (46%), Positives = 126/181 (69%)

Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YDYLFK ++IG++GVGKSCLLL+F+D  +   +  TIGV+F  + V +DG+ +KLQIWDT
Sbjct: 3   YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDT 62

Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE FR+IT SYYRG+ G ++VYD+T +E+FN +  WL++  ++A   +  +LVGNKCD
Sbjct: 63  AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD 122

Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 182
           L  +R V  +  ++FA  N + FLE SA  + NVE+AF+  A +I +++ +  L+    +
Sbjct: 123 LKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQK 182

Query: 183 S 183
            
Sbjct: 183 K 183

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  170 bits (431), Expect = 9e-55
 Identities = 103/173 (59%), Positives = 135/173 (78%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           +YD+LFK+++IG+ G GKSCLL QF +K+F+   + TIGVEFG++++ + G+ +KLQIWD
Sbjct: 1   TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWD 60

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE FRS+TRSYYRGAAGALLVYDIT RET+N L++WL DAR  A+ N+ I+L GNK 
Sbjct: 61  TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKK 120

Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG 174
           DL   R V+  E  +FA+EN L+FLE SA T +NVEEAF++ A KIL  I+ G
Sbjct: 121 DLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESG 173

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  169 bits (430), Expect = 1e-54
 Identities = 81/168 (48%), Positives = 114/168 (67%)

Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YD+LFK ++IG+ GVGK+CL+ +FT   F P    TIGV+F  + V I+G  +KLQIWDT
Sbjct: 2   YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDT 61

Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE FRSIT+SYYR A   +L YDIT  E+F  L  WL +  Q+A+  +  +LVGNK D
Sbjct: 62  AGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKID 121

Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           LA RR VS++  E+F++   + +LE SA+ + NVE+ F+  A +++  
Sbjct: 122 LAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISE 169

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  169 bits (429), Expect = 2e-54
 Identities = 91/174 (52%), Positives = 118/174 (67%)

Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YDYLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +DG+ IK QIWDT
Sbjct: 1   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 60

Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE +R IT +YYRGA GALLVYDI +  T+ ++  WL++ R HA+ N+ IMLVGNK D
Sbjct: 61  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 120

Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGAL 176
           L H RAV  +E   FA++N L F+E SA  + NVEEAF     +I + + +  +
Sbjct: 121 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQI 174

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  168 bits (426), Expect = 4e-54
 Identities = 113/165 (68%), Positives = 135/165 (81%)

Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           Y Y+FKYIIIGD GVGKSCLL QFT+K+F      TIGVEFG R++ + G+ IKLQIWDT
Sbjct: 1   YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDT 60

Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE FR++TRSYYRGAAGAL+VYDITRR T+NHLSSWL DAR   NPN  I+L+GNK D
Sbjct: 61  AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKAD 120

Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           L  +R V+ EE +QFA+ENGLLFLEASA+T +NVE+AF++ A KI
Sbjct: 121 LEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  166 bits (421), Expect = 3e-53
 Identities = 140/170 (82%), Positives = 154/170 (90%)

Query: 5   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG 64
           YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMV IDG+ IKLQIWDTAG
Sbjct: 2   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 61

Query: 65  QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124
           QESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQH++ NM IML+GNK DL 
Sbjct: 62  QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 121

Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG 174
            RR V +EEGE FA+E+GL+F+E SA+TA NVEEAFI TA +I + IQ+G
Sbjct: 122 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQG 171

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  165 bits (418), Expect = 8e-53
 Identities = 72/167 (43%), Positives = 105/167 (62%)

Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           +DY+FK +IIG++ VGK+  L ++ D  F P    T+G++F  + +  + + IKLQIWDT
Sbjct: 2   FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 61

Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
           AGQE +R+IT +YYRGA G +L+YDIT  E+FN +  W    + ++  N  ++LVGNKCD
Sbjct: 62  AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 121

Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
           +   R VS E G Q A   G  F EASA+   NV++ F +    I +
Sbjct: 122 MEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICE 168

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  161 bits (407), Expect = 5e-51
 Identities = 78/170 (45%), Positives = 109/170 (64%), Gaps = 2/170 (1%)

Query: 3   YDYL--FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
            D L   K +IIG++GVGKS LLL+FTD  F P    TIGV+F  + +++DG   KL IW
Sbjct: 2   EDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIW 61

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120
           DTAGQE FR++T SYYRGA G +LVYD+TRR+TF  L +WL +   +   N  + ++   
Sbjct: 62  DTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGN 121

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
                 R V + EG +FA+++ +LF+EASA+T   V+ AF +   KI+Q 
Sbjct: 122 KIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQT 171

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  160 bits (405), Expect = 1e-50
 Identities = 64/182 (35%), Positives = 109/182 (59%), Gaps = 11/182 (6%)

Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTI----------DG 52
           YDYL K + +GD+GVGK+  L ++TD +F P    T+G++F  + V              
Sbjct: 2   YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKA 61

Query: 53  RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNM 112
             + LQ+WDTAGQE FRS+T +++R A G LL++D+T +++F ++ +W+   + +A    
Sbjct: 62  FKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCEN 121

Query: 113 -SIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNI 171
             I+L+GNK DL  +R V++ +  + A + G+ + E SA T QNVE+A       I++ +
Sbjct: 122 PDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRM 181

Query: 172 QE 173
           ++
Sbjct: 182 EQ 183

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  150 bits (378), Expect = 8e-47
 Identities = 70/161 (43%), Positives = 106/161 (65%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK + +G+  VGK+ L+ +F    F   +  TIG++F ++ + ++ R I+LQ+WDTAGQE
Sbjct: 1   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 60

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            FRS+  SY R +A A++VYDIT   +F   + W++D R     ++ IMLVGNK DLA +
Sbjct: 61  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 120

Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           R VS EEGE+ AKE  ++F+E SA+   NV++ F + AA +
Sbjct: 121 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  142 bits (357), Expect = 1e-43
 Identities = 58/165 (35%), Positives = 99/165 (60%)

Query: 5   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG 64
           Y FK +++G+  VGK+ L+L++ + +F   H  T+G  F  + + I G+ + L IWDTAG
Sbjct: 2   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 61

Query: 65  QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124
           QE F ++   YYR + GA+LVYDIT  ++F  + +W+++ R+     + + +VGNK DL 
Sbjct: 62  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 121

Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
             R VS +E E +A+  G      SA+  + +EE F+    ++++
Sbjct: 122 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 166

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  139 bits (351), Expect = 1e-42
 Identities = 72/164 (43%), Positives = 110/164 (67%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++G++ VGKS L+L+F   +F    + TIG  F  + V +D   +K +IWDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            + S+   YYRGA  A++VYDIT  E+F    +W+++ ++ A+PN+ I L GNK DLA++
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126

Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           RAV  +E + +A +N LLF+E SA+T+ NV E F+  A K+ +N
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  132 bits (333), Expect = 6e-40
 Identities = 63/171 (36%), Positives = 103/171 (60%), Gaps = 6/171 (3%)

Query: 4   DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTA 63
             LFK I++GD GVGKS L+ ++   +F      TIGVEF  + + +DG  + +QIWDTA
Sbjct: 4   SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 63

Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGN 119
           GQE FRS+   +YRG+   LL + +   ++F +LS+W ++   +A+     +   +++GN
Sbjct: 64  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGN 123

Query: 120 KCDLAHRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKILQ 169
           K D++ R+ VS EE + + ++NG   + E SA+ A NV  AF +   ++L 
Sbjct: 124 KIDISERQ-VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 173

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (331), Expect = 1e-39
 Identities = 55/164 (33%), Positives = 86/164 (52%), Gaps = 2/164 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +QF    F   +D TI  +F  + + +D  P  L+I DTAG E
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125
            F S+   Y +   G +LVY +  +++F +      +  R      + ++LVGNK DL  
Sbjct: 63  QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
            R VS  EG   A+E G  F+E SA++   V+E F +   ++  
Sbjct: 123 EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMNY 166

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (330), Expect = 3e-39
 Identities = 44/180 (24%), Positives = 83/180 (46%), Gaps = 14/180 (7%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
               + K +++GD  VGK+CLL+ + +  F   +  T+  +  A  VT+ G+   L ++D
Sbjct: 5   PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYD 63

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
           TAGQE +  +    Y      L+ + +    +F ++        +   PN+  +L+G + 
Sbjct: 64  TAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQI 123

Query: 122 DL------------AHRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKIL 168
           DL               + +  E+G++ AKE G   ++E SA T + ++  F +    IL
Sbjct: 124 DLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 183

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (329), Expect = 4e-39
 Identities = 43/180 (23%), Positives = 79/180 (43%), Gaps = 14/180 (7%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F   +  T+  +  A  V I G P  L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQE 62

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            +  +    Y      L+ + +    +F ++         H  P    +LVG + DL   
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 122

Query: 127 RAV------------SKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 173
            +             + E  E+ A++   + ++E SA T + ++  F +     L+  + 
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 182

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score =  128 bits (322), Expect = 2e-38
 Identities = 59/164 (35%), Positives = 90/164 (54%), Gaps = 2/164 (1%)

Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           L K I++G  GVGKS L LQF    F   ++ T    +  + V +DG  +++ I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQ 62

Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLA 124
           E + +I  +Y+R   G L V+ IT  E+F   + + E   R   + N+  +LVGNK DL 
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122

Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 168
            +R VS EE +  A +  + ++E SA+T  NV++ F     +I 
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIR 166

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  127 bits (320), Expect = 4e-38
 Identities = 66/161 (40%), Positives = 99/161 (61%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K  ++GDTGVGKS ++ +F +  F P  + TIG  F  + V       K  IWDTAG E
Sbjct: 5   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 64

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            FR++   YYRG+A A++VYDIT+ ETF+ L +W+ + RQH  P++ + + GNKCDL   
Sbjct: 65  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 124

Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           R V + + + +A     +F+E SA+ A N+ E FI+ + +I
Sbjct: 125 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 165

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (320), Expect = 6e-38
 Identities = 49/176 (27%), Positives = 86/176 (48%), Gaps = 14/176 (7%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+  +  +  V +DG+P+ L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 64

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            +  +    Y     +L+ + +    +F ++ +      +H  PN  I+LVG K DL   
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 124

Query: 127 RAVSKE------------EGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKILQ 169
           +   ++            +G   AKE G + +LE SA T + ++  F +    +L 
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 180

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  126 bits (317), Expect = 1e-37
 Identities = 67/164 (40%), Positives = 98/164 (59%), Gaps = 5/164 (3%)

Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           +FK I+IGD+ VGK+CL  +F   RF    + TIGV+F  R V IDG  IK+Q+WDTAGQ
Sbjct: 2   IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 61

Query: 66  ESF-RSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDL 123
           E F +S+ + YYR     + VYD+T   +F+ L +W+E+ +QH    ++  +LVGNKCDL
Sbjct: 62  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 121

Query: 124 AHRRAVSKEEGEQFAKENGLLFLEASARTAQ---NVEEAFIKTA 164
                V  +  ++FA  + +   E SA+      +VE  F+  A
Sbjct: 122 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA 165

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (315), Expect = 2e-37
 Identities = 52/165 (31%), Positives = 86/165 (52%), Gaps = 3/165 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +Q     F   +D TI   +  ++V        L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDG-ETCLLDILDTAGQE 62

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAH 125
            + ++   Y R   G L V+ I   ++F  +  + E  ++  +  ++ ++LVGNKCD   
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD-LA 121

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
            R V   + +  A+  G+ ++E SA+T Q VE+AF     +I Q+
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  122 bits (306), Expect = 7e-36
 Identities = 68/172 (39%), Positives = 103/172 (59%), Gaps = 4/172 (2%)

Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           L K II+GD+GVGK+ L+ Q+ +K+F   +  TIG +F  + V +D R + +QIWDTAGQ
Sbjct: 2   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 61

Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP----NMSIMLVGNKC 121
           E F+S+  ++YRGA   +LV+D+T   TF  L SW ++    A+P    N   +++GNK 
Sbjct: 62  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 121

Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 173
           DL +R+  +K        +N + + E SA+ A NVE+AF   A   L+   E
Sbjct: 122 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETE 173

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (305), Expect = 7e-36
 Identities = 55/171 (32%), Positives = 89/171 (52%), Gaps = 2/171 (1%)

Query: 4   DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTA 63
               K +++G  GVGKS L +QF    F   +D     +   ++ ++DG P +L I DTA
Sbjct: 4   SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYD-PTIEDSYTKICSVDGIPARLDILDTA 62

Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCD 122
           GQE F ++   Y R   G LLV+ I  R++FN +   + +  R     +  ++LVGNK D
Sbjct: 63  GQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKAD 122

Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 173
           L  +R V + E   F   + + + EASA+   NV+EAF +    + +  ++
Sbjct: 123 LESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQ 173

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (303), Expect = 1e-35
 Identities = 59/168 (35%), Positives = 96/168 (57%), Gaps = 3/168 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           ++ +++G  GVGKS L +QF    F   +D TI  +   +   ID R  +L I DTAGQE
Sbjct: 6   YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQE 64

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWL-EDARQHANPNMSIMLVGNKCDLAH 125
            F ++   Y R   G LLV+ +T R +F  +  +  +  R        ++L+GNK DL H
Sbjct: 65  EFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDH 124

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 173
           +R V++EEG+Q A++  + ++EASA+   NV++AF     ++++  QE
Sbjct: 125 QRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAF-HELVRVIRKFQE 171

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  120 bits (302), Expect = 3e-35
 Identities = 68/163 (41%), Positives = 102/163 (62%), Gaps = 3/163 (1%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++G+  VGKS ++L+F    F    + TIG  F  + VTI+   +K +IWDTAGQE 
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-- 125
           F S+   YYR A  AL+VYD+T+ ++F     W+++  + A+ ++ I LVGNK D+    
Sbjct: 65  FASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEG 124

Query: 126 -RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
             R V++EEGE+ A+E GLLF E SA+T +NV + F+    KI
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (299), Expect = 6e-35
 Identities = 61/163 (37%), Positives = 88/163 (53%), Gaps = 3/163 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +QF    F   +D TI  +   + V +D +   L+I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTE 62

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAH 125
            F ++   Y +   G  LVY IT + TFN L    E   R     ++ ++LVGNKCDL  
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122

Query: 126 RRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAKI 167
            R V KE+G+  A++     FLE+SA++  NV E F     +I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (293), Expect = 5e-34
 Identities = 50/176 (28%), Positives = 80/176 (45%), Gaps = 14/176 (7%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +I+GD   GK+CLL+  +  +F  V+  T+  E     + +DG+ ++L +WDTAG E
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLE 61

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            +  +    Y      L+ + I   ++  ++        +H  PN+ I+LVGNK DL + 
Sbjct: 62  DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 121

Query: 127 RAVSK------------EEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKILQ 169
               +            EEG   A   G   ++E SA+T   V E F       LQ
Sbjct: 122 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 177

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  115 bits (288), Expect = 2e-33
 Identities = 61/162 (37%), Positives = 88/162 (54%), Gaps = 1/162 (0%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++G+  VGKS ++ ++    F   +  TIGV+F  R + ++   ++L +WDTAGQE 
Sbjct: 4   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 63

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR 127
           F +IT++YYRGA   +LV+  T RE+F  +SSW E        ++   LV NK DL    
Sbjct: 64  FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREK-VVAEVGDIPTALVQNKIDLLDDS 122

Query: 128 AVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
            +  EE E  AK   L F   S +   NV E F   A K LQ
Sbjct: 123 CIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 164

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score =  114 bits (285), Expect = 9e-33
 Identities = 30/165 (18%), Positives = 60/165 (36%), Gaps = 9/165 (5%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            + +++G    GK+ +L +    +       T     G  + T+  + +K  +WD  GQ+
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQSV-----TTIPTVGFNVETVTYKNVKFNVWDVGGQD 67

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAH 125
             R + R YY G  G + V D   R+  +     L          +  I++  NK DL  
Sbjct: 68  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 127

Query: 126 RR---AVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
                 + ++ G    ++       + A +   + E      +  
Sbjct: 128 AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  113 bits (284), Expect = 1e-32
 Identities = 56/165 (33%), Positives = 91/165 (55%), Gaps = 3/165 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++GD GVGKS L +QF  K F P +D TI   +  +   ID +   L + DTAGQE
Sbjct: 5   YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYL-KHTEIDNQWAILDVLDTAGQE 63

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAH 125
            F ++   Y R   G L+VY +T + +F H+  + +   R     +  ++LV NK DL H
Sbjct: 64  EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 123

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQ-NVEEAFIKTAAKILQ 169
            R V++++G++ A +  + ++E SA+    NV++ F      I Q
Sbjct: 124 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 168

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  114 bits (284), Expect = 1e-32
 Identities = 64/174 (36%), Positives = 102/174 (58%), Gaps = 7/174 (4%)

Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPI-KLQIWDTAG 64
           + K II+GD+GVGK+ L+ ++ + ++   +  TIG +F  + VT+DG  +  +Q+WDTAG
Sbjct: 2   ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 61

Query: 65  QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPN----MSIMLVGNK 120
           QE F+S+  ++YRGA   +LVYD+T   +F ++ SW ++   HAN N       +++GNK
Sbjct: 62  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 121

Query: 121 CDLAHRRAVSKEEGEQ-FAKENG-LLFLEASARTAQNVEEAFIKTAAKILQNIQ 172
            D    + +  E+  Q  AK  G +     SA+ A NV+ AF + A   LQ  Q
Sbjct: 122 IDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQNQ 175

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  112 bits (281), Expect = 4e-32
 Identities = 47/176 (26%), Positives = 78/176 (44%), Gaps = 14/176 (7%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K +++GD+  GK+ LL  F    F   +  T+  E       ID + I+L +WDT+G   
Sbjct: 4   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 62

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL---- 123
           + ++    Y  +   L+ +DI+R ET + +    +   Q   PN  ++LVG K DL    
Sbjct: 63  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 122

Query: 124 --------AHRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKILQN 170
                     +  VS ++G   AK+ G   ++E SA  ++N        A     N
Sbjct: 123 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 178

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (271), Expect = 8e-31
 Identities = 58/165 (35%), Positives = 82/165 (49%), Gaps = 4/165 (2%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K  I G  GVGKS L+++F  KRF   +D T+   +     TID   + ++I DT   +
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEVVSMEILDT-AGQ 60

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125
                   + R   G +LVYDIT R +F   L             N++++LVGNK DL H
Sbjct: 61  EDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH 120

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQ-NVEEAFIKTAAKILQ 169
            R VS EEGE+ A E    F E SA T + N+ E F +   ++ +
Sbjct: 121 SRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRR 165

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (271), Expect = 1e-30
 Identities = 49/166 (29%), Positives = 74/166 (44%), Gaps = 3/166 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           ++  + G  GVGKS L+L+F    F+  +  T+   +   +         LQI DT G  
Sbjct: 3   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDK-SICTLQITDTTGSH 61

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLA 124
            F ++ R         +LVY IT R++   L    E   +      ++ IMLVGNKCD +
Sbjct: 62  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 121

Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
             R V   E E  A+     F+E SA+   NV+E F +      + 
Sbjct: 122 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRR 167

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score =  107 bits (268), Expect = 2e-30
 Identities = 26/164 (15%), Positives = 60/164 (36%), Gaps = 9/164 (5%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           + +++G    GK+ +L +            T     G  + T++ + I   +WD  GQ+ 
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIV-----TTIPTIGFNVETVEYKNISFTVWDVGGQDK 56

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKC---DL 123
            R + R Y++   G + V D   RE  N      +    +    +  +++  NK    + 
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116

Query: 124 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
            +   ++ + G    +          A +   + E     + ++
Sbjct: 117 MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score =  108 bits (269), Expect = 2e-30
 Identities = 38/167 (22%), Positives = 64/167 (38%), Gaps = 9/167 (5%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            + +I+G  G GK+ +L +                  G  + T+  + +KL +WD  GQ 
Sbjct: 18  LRILILGLDGAGKTTILYRLQIGEVVTTKP-----TIGFNVETLSYKNLKLNVWDLGGQT 72

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAH 125
           S R   R YY   A  + V D T ++  +  S  L    Q     + ++++  NK D   
Sbjct: 73  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 132

Query: 126 R---RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
                 VSKE      K+     + +SA   + + E        I +
Sbjct: 133 ALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKE 179

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (268), Expect = 3e-30
 Identities = 51/164 (31%), Positives = 90/164 (54%), Gaps = 3/164 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           FK +++GD G GK+  + +     F+  +  T+GVE    +   +  PIK  +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
            F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDR 122

Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
           +   K +   F ++  L + + SA++  N E+ F+  A K++ +
Sbjct: 123 K--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 164

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score =  102 bits (254), Expect = 4e-28
 Identities = 35/165 (21%), Positives = 62/165 (37%), Gaps = 9/165 (5%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K II+G    GK+ +L QF+                G+ +  I     +  +WD  GQE
Sbjct: 16  HKVIIVGLDNAGKTTILYQFSMNEVVHTSP-----TIGSNVEEIVINNTRFLMWDIGGQE 70

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNM-SIMLVGNKCDLAH 125
           S RS   +YY      ++V D T RE  +     L     H +     +++  NK D+  
Sbjct: 71  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 130

Query: 126 R---RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
                 +S+       K++        A T + + +      +++
Sbjct: 131 CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 175

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.0 bits (245), Expect = 7e-27
 Identities = 53/162 (32%), Positives = 83/162 (51%), Gaps = 2/162 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K  I+G   VGKS L +QF + +F   +D TI   F  +++T++G+   LQ+ DTAGQ+
Sbjct: 5   RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQD 63

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP-NMSIMLVGNKCDLAH 125
            +    ++Y     G +LVY +T  ++F  +               + IMLVGNK DL  
Sbjct: 64  EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 123

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
            R +S EEG+  A+     FLE+SA+  Q   + F +   + 
Sbjct: 124 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEA 165

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.5 bits (241), Expect = 3e-26
 Identities = 45/169 (26%), Positives = 71/169 (42%), Gaps = 3/169 (1%)

Query: 4   DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIGVEFGARMVTIDGRPIKLQIWDT 62
           +  ++ ++IG+ GVGKS L   F         D   +G +   R + +DG    + + D 
Sbjct: 1   NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDM 60

Query: 63  A-GQESFRSITRSYYRGAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGNK 120
              +     +     +     L+VY IT R +F       ++  R     ++ I+LVGNK
Sbjct: 61  WENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 120

Query: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
            DL   R VS  EG   A      F+E SA    NV+E F     ++  
Sbjct: 121 SDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRL 169

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.0 bits (240), Expect = 5e-26
 Identities = 30/170 (17%), Positives = 61/170 (35%), Gaps = 7/170 (4%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            +  ++GD   GKS L+ +F    +Q +       E   + + +DG+   + I + AG  
Sbjct: 6   LRLGVLGDARSGKSSLIHRFLTGSYQVLE--KTESEQYKKEMLVDGQTHLVLIREEAGA- 62

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD--LA 124
              +    +         + D    +  + L   L   R      +++ LVG +     +
Sbjct: 63  -PDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISAS 121

Query: 125 HRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 173
             R V          +     + E  A    NV+  F + A K++   ++
Sbjct: 122 SPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQ 171

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.6 bits (236), Expect = 1e-25
 Identities = 43/167 (25%), Positives = 66/167 (39%), Gaps = 3/167 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
           +K +++G  GVGKS L   F      P            R + +DG    L ++D   Q+
Sbjct: 2   YKVLLLGAPGVGKSALARIFGGVEDGPEA--EAAGHTYDRSIVVDGEEASLMVYDIWEQD 59

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIML-VGNKCDLAH 125
             R +           ++VY +T + +F   S      R+    +   ++ VGNK DL  
Sbjct: 60  GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 119

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 172
            R VS +EG   A      F+E SA    NV+  F     +I     
Sbjct: 120 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRD 166

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 95.1 bits (235), Expect = 2e-25
 Identities = 34/165 (20%), Positives = 62/165 (37%), Gaps = 9/165 (5%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            + +++G    GK+ +L +F  +        TI    G  + T++ R  KL IWD  GQ+
Sbjct: 3   LRLLMLGLDNAGKTTILKKFNGEDVD-----TISPTLGFNIKTLEHRGFKLNIWDVGGQK 57

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSW-LEDARQHANPNMSIMLVGNKCDLAH 125
           S RS  R+Y+    G + V D   R+              +      ++++  NK DL  
Sbjct: 58  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 117

Query: 126 RRAVSK---EEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
             + +           + +       SA T +++          I
Sbjct: 118 ALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDI 162

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 95.0 bits (235), Expect = 2e-25
 Identities = 31/170 (18%), Positives = 62/170 (36%), Gaps = 9/170 (5%)

Query: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
           + D   + +++G    GK+ LL Q   +    +         G  + ++  +  KL +WD
Sbjct: 12  APDQEVRILLLGLDNAGKTTLLKQLASEDISHITP-----TQGFNIKSVQSQGFKLNVWD 66

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP-NMSIMLVGNK 120
             GQ   R   RSY+      + V D   R+ F      L +  +      + +++  NK
Sbjct: 67  IGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANK 126

Query: 121 CDLAHRR---AVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
            DL        +++       ++        SA T + V++        +
Sbjct: 127 QDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 90.5 bits (223), Expect = 1e-23
 Identities = 29/169 (17%), Positives = 64/169 (37%), Gaps = 12/169 (7%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            +  ++G    GK+  +      +F      T     G  M  I    + +++WD  GQ 
Sbjct: 3   MELTLVGLQYSGKTTFVNVIASGQFNEDMIPT----VGFNMRKITKGNVTIKLWDIGGQP 58

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP-NMSIMLVGNKCDLA- 124
            FRS+   Y RG +  + + D   +E      + L +         + ++++GNK DL  
Sbjct: 59  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 118

Query: 125 --HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNI 171
               + + ++      ++  +     S +   N++         ++Q+ 
Sbjct: 119 ALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITL----QWLIQHS 163

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 88.2 bits (217), Expect = 8e-23
 Identities = 28/164 (17%), Positives = 56/164 (34%), Gaps = 16/164 (9%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
           K + +G    GK+ LL    + R       T+   +      +    IK   +D  G   
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRLA-----TLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 56

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHR 126
            R + + Y+    G + + D    E F+     L+     A   ++  +++GNK D  + 
Sbjct: 57  ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA 116

Query: 127 RAVSK----------EEGEQFAKENGLLFLEASARTAQNVEEAF 160
            + ++             ++   +  +     S        EAF
Sbjct: 117 VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAF 160

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 88.2 bits (217), Expect = 9e-23
 Identities = 32/165 (19%), Positives = 56/165 (33%), Gaps = 9/165 (5%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            + +I+G  G GK+ +L +                  G  + T+  + +K Q+WD  G  
Sbjct: 6   MRILILGLDGAGKTTILYRLQVGEVVTTIP-----TIGFNVETVTYKNLKFQVWDLGGLT 60

Query: 67  SFRSITRSYYRGAAGALLVYDIT-RRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125
           S R   R YY      + V D   R       S  +    +       +++  NK D+  
Sbjct: 61  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 120

Query: 126 RRAVSK---EEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
               S+     G    K+      + SA     ++EA       +
Sbjct: 121 AMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 165

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 89.4 bits (221), Expect = 1e-22
 Identities = 23/179 (12%), Positives = 47/179 (26%), Gaps = 20/179 (11%)

Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           Y    + +++G    GKS ++ Q            T G+             +   ++D 
Sbjct: 3   YRATHRLLLLGAGESGKSTIVKQMRILHVVL----TSGIFE----TKFQVDKVNFHMFDV 54

Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLE-----------DARQHANPN 111
            GQ   R      +      + V   +         +                       
Sbjct: 55  GGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRT 114

Query: 112 MSIMLVGNKCDLAHRRAVSKEEG-EQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
           +S++L  NK DL   + ++ +   E +  E         A      +    +    I  
Sbjct: 115 ISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRD 173

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 88.4 bits (218), Expect = 2e-22
 Identities = 35/199 (17%), Positives = 57/199 (28%), Gaps = 31/199 (15%)

Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
           L K +++G    GKS  L Q    R     D T G+         + + +  ++ D  GQ
Sbjct: 2   LVKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHE----YDFEIKNVPFKMVDVGGQ 54

Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-----------RQHANPNMSI 114
            S R      +      L +   +  +                             N+SI
Sbjct: 55  RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI 114

Query: 115 MLVGNKCDLAHRRAVSKEEGEQF------------AKENGLLFLEASARTAQNVEEAFIK 162
           +L  NK DL   +       + F             ++  +       R  Q        
Sbjct: 115 ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHF 174

Query: 163 TAAKILQNIQEGALDAVND 181
           T A   +NI+      V D
Sbjct: 175 TTAINTENIRL-VFRDVKD 192

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 85.8 bits (211), Expect = 2e-21
 Identities = 30/201 (14%), Positives = 56/201 (27%), Gaps = 43/201 (21%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++G    GKS  + Q        V   T G+         D + +  ++ D  GQ 
Sbjct: 3   LKLLLLGTGESGKSTFIKQMRIIHGSGVP--TTGIIE----YPFDLQSVIFRMVDVGGQR 56

Query: 67  SFRSITRSYYRGAAGALLVYDIT-----------RRETFNHLSSWLEDARQHANPNMSIM 115
           S R      +      + +  ++                   + +          N S++
Sbjct: 57  SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVI 116

Query: 116 LVGNKCDLAHRRAVSKEEGEQFAKENG--------------------------LLFLEAS 149
           L  NK DL   + +     + F + +G                          +      
Sbjct: 117 LFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTC 176

Query: 150 ARTAQNVEEAFIKTAAKILQN 170
           A   +N+   F      ILQ 
Sbjct: 177 ATDTENIRFVFAAVKDTILQL 197

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 78.2 bits (191), Expect = 9e-19
 Identities = 30/181 (16%), Positives = 48/181 (26%), Gaps = 21/181 (11%)

Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           Y    K + +G    GK+ LL    D R                   +    +    +D 
Sbjct: 10  YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVP-----TLHPTSEELTIAGMTFTTFDL 64

Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWL-EDARQHANPNMSIMLVGNKC 121
            G    R + ++Y     G + + D    E        L          N+ I+++GNK 
Sbjct: 65  GGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKI 124

Query: 122 DLAHRRAVSK---------------EEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 166
           D     +  +                   +      L     S    Q   E F   A  
Sbjct: 125 DRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 184

Query: 167 I 167
           I
Sbjct: 185 I 185

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 76.5 bits (187), Expect = 5e-18
 Identities = 27/201 (13%), Positives = 54/201 (26%), Gaps = 46/201 (22%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +++G    GKS ++ Q              G+           + +  +++D  GQ 
Sbjct: 3   VKLLLLGAGESGKSTIVKQMKIIHEA-----GTGIVE----THFTFKDLHFKMFDVGGQR 53

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSS-----------WLEDARQHANPNMSIM 115
           S R      + G    +    ++  +                  +          + SI+
Sbjct: 54  SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII 113

Query: 116 LVGNKCDLAHRRAVSKEEGEQFAKENG--------------------------LLFLEAS 149
           L  NK DL   +         + +  G                          +      
Sbjct: 114 LFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTC 173

Query: 150 ARTAQNVEEAFIKTAAKILQN 170
           A   +NV+  F      I++N
Sbjct: 174 ATDTKNVQFVFDAVTDVIIKN 194

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 73.1 bits (178), Expect = 9e-17
 Identities = 28/195 (14%), Positives = 59/195 (30%), Gaps = 17/195 (8%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR 69
           + +G    GK+ L ++    +++     +I        V  +       I     +    
Sbjct: 4   LFVGLCDSGKTLLFVRLLTGQYRDTQT-SITDSSAIYKVNNNRGNSLTLIDLPGHESLRF 62

Query: 70  SITRSYYRGAAGALLVYDITRRETF-----NHLSSWLEDARQHANPNMSIMLVGNKCDLA 124
            +   +   A   + V D    +         L   L D+    N + S+++  NK D+A
Sbjct: 63  QLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKN-SPSLLIACNKQDIA 121

Query: 125 HRRAVSKEEGEQFAKE---------NGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGA 175
             ++  K   +Q  KE              L++S+     + +   +     L    E  
Sbjct: 122 MAKSA-KLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFL 180

Query: 176 LDAVNDQSGIKVGYG 190
             +     G      
Sbjct: 181 ECSAKGGRGDTGSAD 195

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.4 bits (145), Expect = 5e-12
 Identities = 30/174 (17%), Positives = 48/174 (27%), Gaps = 25/174 (14%)

Query: 5   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG 64
           Y    II G    GK+ LL   T    +P    T+  +        DG  +   + D  G
Sbjct: 2   YQPSIIIAGPQNSGKTSLLTLLTTDSVRP----TVVSQEPLSAADYDGSGV--TLVDFPG 55

Query: 65  QESFRSITRSYYRGAAGA-----LLVYDITRRETFNHLSSWLED----ARQHANPNMSIM 115
               R     Y +  A        +V      +     + +L D            + I+
Sbjct: 56  HVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL 115

Query: 116 LVGNKCDLAHRRAVSKEEGEQFAKE---------NGLLFLEASARTAQNVEEAF 160
           +  NK +L   R    +  +    E           L  +E         E   
Sbjct: 116 IACNKSELFTARPP-SKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTL 168

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 56.7 bits (135), Expect = 5e-11
 Identities = 29/152 (19%), Positives = 47/152 (30%), Gaps = 1/152 (0%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K +I G    GKS LL     +    V D   G         I    + L I DTAG  
Sbjct: 2   MKVVIAGRPNAGKSSLLNALAGREAAIVTD-IAGTTRDVLREHIHIDGMPLHIIDTAGLR 60

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
                        A   +          +  ++   D  +     ++ +       +   
Sbjct: 61  EASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRN 120

Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEE 158
           +A    E    ++ NG   +  SART + V+ 
Sbjct: 121 KADITGETLGMSEVNGHALIRLSARTGEGVDV 152

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 47.7 bits (112), Expect = 1e-07
 Identities = 28/156 (17%), Positives = 43/156 (27%), Gaps = 11/156 (7%)

Query: 11  IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ----E 66
           ++G    GKS LL   T    +        +     +V +     +  + D  G      
Sbjct: 6   LVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVS-EEERFTLADIPGIIEGAS 64

Query: 67  SFRSITRSYYRGAAGALL---VYDITRRETFNHLSSWLEDARQHANPNMSIML-VGNKCD 122
             + +   + R  A   +   V D          +   E             L   NK D
Sbjct: 65  EGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVD 124

Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEE 158
           L    AV  +         GL  L  SA T   +  
Sbjct: 125 LLEEEAV--KALADALAREGLAVLPVSALTGAGLPA 158

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 43.8 bits (102), Expect = 2e-06
 Identities = 24/160 (15%), Positives = 51/160 (31%), Gaps = 19/160 (11%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEF---------GARMVTIDGRPIKLQ 58
           + +I+G   VGKS LL +  ++    V D+               G     +D   ++ +
Sbjct: 2   RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSE 61

Query: 59  IWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVG 118
             D   +      T      A   L V D +                +     ++ + V 
Sbjct: 62  TNDLVERLGIER-TLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVV 120

Query: 119 NKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEE 158
            K +        +E   +   +  ++ +  SA   + +E+
Sbjct: 121 EKIN-------EEEIKNKLGTDRHMVKI--SALKGEGLEK 151

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 43.6 bits (101), Expect = 4e-06
 Identities = 22/165 (13%), Positives = 44/165 (26%), Gaps = 10/165 (6%)

Query: 4   DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTA 63
           D   +    G +  GKS  L   T+++       T G      +  +      + +    
Sbjct: 14  DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYG 73

Query: 64  GQESFRSI-------TRSYYRGAAGALLVYDITRRETFNH--LSSWLEDARQHANPNMSI 114
             E    +          Y         +  +              +E A       + +
Sbjct: 74  YAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVL 133

Query: 115 MLVGNKCDLAHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEE 158
           +   +K     R+A      E     NG +     S+   Q V++
Sbjct: 134 LTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDK 178

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 43.6 bits (101), Expect = 4e-06
 Identities = 34/170 (20%), Positives = 54/170 (31%), Gaps = 13/170 (7%)

Query: 11  IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS 70
           I+G   VGKS LL      +  P+               +     ++   DT G      
Sbjct: 10  IVGKPNVGKSTLLNNLLGVKVAPISP-RPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMD 68

Query: 71  ITRSYYR------GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124
               +         A    +V+ +  R         +  A +     + I+LVGNK D A
Sbjct: 69  ALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAA 128

Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG 174
                + +   +   E     L  SA   + V E      A +L  + EG
Sbjct: 129 KYPEEAMKAYHELLPEAEPRML--SALDERQVAELK----ADLLALMPEG 172

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 43.2 bits (100), Expect = 5e-06
 Identities = 23/169 (13%), Positives = 54/169 (31%), Gaps = 10/169 (5%)

Query: 11  IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT-----AGQ 65
           I+G   VGKS LL +   ++                 +  +G    + +          +
Sbjct: 10  IVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKR 69

Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125
              R + ++         LV  +     +      + +  +     + I+ V    ++  
Sbjct: 70  AINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPV-ILAVNKVDNVQE 128

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG 174
           +  +        ++ N L  +  SA T  NV+       A + +++ E 
Sbjct: 129 KADLLPHLQFLASQMNFLDIVPISAETGLNVDTIA----AIVRKHLPEA 173

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.5 bits (94), Expect = 7e-05
 Identities = 26/156 (16%), Positives = 40/156 (25%), Gaps = 12/156 (7%)

Query: 11  IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPI--KLQIWDTAGQESF 68
           + G+TG GKS  +        +       GV            P    +  WD  G  S 
Sbjct: 61  VTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGST 120

Query: 69  RSITRSY---YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125
                +Y    +       +     R   N +      +            V  K D   
Sbjct: 121 NFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMM----KKEFYFVRTKVDS-D 175

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161
               +  E + F KE  L  +  +        E  I
Sbjct: 176 ITNEADGEPQTFDKEKVLQDIRLN--CVNTFRENGI 209

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 39.5 bits (91), Expect = 8e-05
 Identities = 24/177 (13%), Positives = 53/177 (29%), Gaps = 14/177 (7%)

Query: 11  IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGAR-MVTIDGRPIKLQIWDTAGQESFR 69
           ++G   VGKS LL   +  + +        +      + T DGR     + D  G     
Sbjct: 6   LVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSF--VMADLPGLIEGA 63

Query: 70  S----ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125
                +   + R      ++  +           + +    +   +   + +  +  +  
Sbjct: 64  HQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIV 123

Query: 126 RRAVSKEEGEQFAKE------NGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGAL 176
              +   E  +  +       +       SA T + + E  +   A  L+N  E  L
Sbjct: 124 ANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRE-LLFEVANQLENTPEFPL 179

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 38.1 bits (87), Expect = 2e-04
 Identities = 23/165 (13%), Positives = 38/165 (23%), Gaps = 14/165 (8%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
            K  I+G   VGKS L     +K    V  +                  K    DTAG  
Sbjct: 9   IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG-RKYVFVDTAGLR 67

Query: 67  SFRSITR---------SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLV 117
               +                   A +V  +                        S+++ 
Sbjct: 68  RKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVF 127

Query: 118 GNK----CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEE 158
                           +K   E+    +    +  SA    N++ 
Sbjct: 128 NKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDR 172

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 37.8 bits (86), Expect = 3e-04
 Identities = 28/172 (16%), Positives = 50/172 (29%), Gaps = 12/172 (6%)

Query: 11  IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS 70
           I+G   VGKS L  +   K+   V D         +            +      ++ + 
Sbjct: 5   IVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQD 64

Query: 71  ITRSYYRGAA-----GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125
           I     +         A LV  +               A       +  +LV NK +   
Sbjct: 65  IISQKMKEVTLNMIREADLVLFVVDG-KRGITKEDESLADFLRKSTVDTILVANKAENL- 122

Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALD 177
            R   +E   +         +  SA    N++         I++ ++E  LD
Sbjct: 123 -REFEREVKPELYSLGFGEPIPVSAEHNINLDTML----ETIIKKLEEKGLD 169

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

 Score = 37.8 bits (86), Expect = 3e-04
 Identities = 16/162 (9%), Positives = 42/162 (25%), Gaps = 9/162 (5%)

Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG- 64
           L +  + G + VGKS  +    +++         G         I+     + +      
Sbjct: 23  LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFA 82

Query: 65  -----QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGN 119
                +          Y      L              +  ++         + ++++  
Sbjct: 83  KVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIAT 142

Query: 120 KCDLAHRRAVSK---EEGEQFAKENGLLFLEASARTAQNVEE 158
           K D   +    K      +    +     +  S+ T +  +E
Sbjct: 143 KADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDE 184

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 36.6 bits (83), Expect = 9e-04
 Identities = 34/186 (18%), Positives = 55/186 (29%), Gaps = 28/186 (15%)

Query: 10  IIIGDTGVGKSCLLLQFTDKR------------------FQPVHDLTIGVEFGARMVTID 51
           I  G + VGKS L+ + T K+                           G  F   +    
Sbjct: 4   IFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKEV 63

Query: 52  GRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPN 111
              IK +I      E              G      I R E    +   +E  +     +
Sbjct: 64  QERIKDEIVHF--IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELD 121

Query: 112 MSIMLVGNKCDLAHRRAVS----KEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
           +  ++  NK D             E+ E    E   +F+  SA+   N+E        +I
Sbjct: 122 IPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLK----NRI 177

Query: 168 LQNIQE 173
            + I+E
Sbjct: 178 FEVIRE 183

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 35.6 bits (81), Expect = 0.003
 Identities = 21/145 (14%), Positives = 40/145 (27%), Gaps = 12/145 (8%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG-- 64
              +++G  GVGKS  +     +R   +            MV+       L I DT G  
Sbjct: 33  LTILVMGKGGVGKSSTVNSIIGERVVSISPFQ-SEGPRPVMVSRSRAGFTLNIIDTPGLI 91

Query: 65  -----QESFRSITRSYY--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPN--MSIM 115
                 +   +I +S+   +     L V  +      N      +              +
Sbjct: 92  EGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAI 151

Query: 116 LVGNKCDLAHRRAVSKEEGEQFAKE 140
           +       +    +  +E      E
Sbjct: 152 VALTHAQFSPPDGLPYDEFFSKRSE 176

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	211
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.98
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.97
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.96
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.96
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.96
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.96
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.94
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.92
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.92
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.91
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.91
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.91
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.91
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.9
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.9
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.88
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.88
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.88
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.87
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.87
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.87
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.87
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.85
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.84
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.84
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.83
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.83
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.81
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.8
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.78
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.75
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.74
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.74
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.72
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.71
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.69
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.68
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.6
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.59
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.58
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.56
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.53
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.51
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.36
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.26
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.24
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.21
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.12
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.0
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.99
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	98.93
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.6
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.34
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.32
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.3
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.28
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.21
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.06
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.04
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.03
d1okkd2	207	GTPase domain of the signal recognition particle r	97.93
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.92
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.9
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.82
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.55
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.52
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.49
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.44
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.4
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.3
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.28
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.28
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.25
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.21
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.2
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.15
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.15
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.14
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.12
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.11
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.1
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.08
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.04
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.04
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.03
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.02
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.0
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.0
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	96.99
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	96.98
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.98
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	96.97
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.95
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	96.95
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	96.93
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	96.93
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.93
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	96.93
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.92
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	96.92
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	96.92
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.9
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	96.87
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.84
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.83
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	96.83
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.83
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	96.83
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.81
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.81
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.8
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.79
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	96.79
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.78
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	96.77
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.76
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.7
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	96.7
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.69
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.65
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.62
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.62
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.59
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.57
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.56
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.52
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.51
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.49
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.45
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.45
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.33
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.32
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.3
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.21
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.21
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.17
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.16
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.12
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.09
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.02
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.01
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	95.92
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.85
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	95.8
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	95.8
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	95.74
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	95.71
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	95.71
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.64
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	95.64
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	95.63
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.62
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.58
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.49
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.3
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.22
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	95.19
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.13
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.08
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.07
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	94.97
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	94.95
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	94.94
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	94.9
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	94.87
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	94.84
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	94.73
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	94.72
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	94.64
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	94.55
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	94.52
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	94.44
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	94.38
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	94.35
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	94.28
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.21
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	94.21
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	93.94
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	93.87
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	93.86
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	93.84
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	93.71
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	93.67
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	93.58
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	93.49
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	93.33
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	93.29
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	93.28
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	93.27
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	93.24
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	92.93
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	92.68
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	92.6
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	92.58
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	92.47
d1tuea_	205	Replication protein E1 helicase domain {Human papi	92.43
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	92.2
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	92.14
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	91.99
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	91.45
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	91.36
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	91.34
d1xpua3	289	Transcription termination factor Rho, ATPase domai	91.23
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	91.16
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	90.1
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	89.41
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	88.95
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	88.61
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	87.82
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	87.48
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	86.45
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	86.39
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	85.81
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	83.54
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	83.2
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	82.7
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	82.68
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	80.97
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	80.91
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	80.14
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	80.05

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.1e-37  Score=224.40  Aligned_cols=168  Identities=43%  Similarity=0.809  Sum_probs=158.4

Q ss_pred             CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028251            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      +|+|.+||+++|++|||||||+++|..+.+.+.+.++.+.+.....+......+.+.+|||||++.+..++..+++.+|+
T Consensus         1 ~~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~   80 (169)
T d3raba_           1 NFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMG   80 (169)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCE
T ss_pred             CCCeEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence            58999999999999999999999999999999988988999999989999999999999999999999999999999999


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028251           82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  161 (211)
                      +|+|||+++++++..+..|+..+........|+++++||+|+.+...++.++++.+++..+++++++||++|.|++++|+
T Consensus        81 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~  160 (169)
T d3raba_          81 FILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFE  160 (169)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHH
Confidence            99999999999999999999888877777899999999999988888888999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 028251          162 KTAAKILQ  169 (211)
Q Consensus       162 ~i~~~~~~  169 (211)
                      .|++.+.+
T Consensus       161 ~l~~~i~e  168 (169)
T d3raba_         161 RLVDVICE  168 (169)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhh
Confidence            99998865

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-37  Score=223.05  Aligned_cols=170  Identities=48%  Similarity=0.851  Sum_probs=159.8

Q ss_pred             CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028251            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      +|++.+||+|+|++|||||||+++|+.+.+.+.+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus         1 ~~~~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~   80 (171)
T d2ew1a1           1 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANA   80 (171)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSE
T ss_pred             CCCEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccce
Confidence            58999999999999999999999999999999988988999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028251           82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  161 (211)
                      +++|||++++.++..+..|+..+........|+++++||+|+.+...+..+++..++...+++++++||++|.||+++|.
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~  160 (171)
T d2ew1a1          81 LILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFL  160 (171)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEeeecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHH
Confidence            99999999999999999999998887777899999999999988788888999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 028251          162 KTAAKILQNI  171 (211)
Q Consensus       162 ~i~~~~~~~~  171 (211)
                      .|++.++...
T Consensus       161 ~l~~~l~~~~  170 (171)
T d2ew1a1         161 DLACRLISEA  170 (171)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9998887653

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-37  Score=221.69  Aligned_cols=173  Identities=60%  Similarity=1.002  Sum_probs=163.1

Q ss_pred             CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028251            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      .||+.+||+|+|.+|||||||+++|..+.+.+.+.++.+.+.....+..++....+.+||+||++.+..++..+++.+|+
T Consensus         1 ~~~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   80 (174)
T d2bmea1           1 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAG   80 (174)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred             CccEEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCE
Confidence            58999999999999999999999999999999999998999888888899999999999999999999999999999999


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028251           82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  161 (211)
                      +|+|||+++++++..+..|+..+......+.|+++++||+|+....+...+++..++...+++++++||++|.|++++|+
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~  160 (174)
T d2bmea1          81 ALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFV  160 (174)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEEEecccchhHHHHhhhhcccccccCCceEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHH
Confidence            99999999999999999999999888778899999999999988788888899999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhc
Q 028251          162 KTAAKILQNIQEG  174 (211)
Q Consensus       162 ~i~~~~~~~~~~~  174 (211)
                      +|.+.++++...+
T Consensus       161 ~l~~~i~~~~~~~  173 (174)
T d2bmea1         161 QCARKILNKIESG  173 (174)
T ss_dssp             HHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999887765

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-36  Score=218.52  Aligned_cols=165  Identities=68%  Similarity=1.124  Sum_probs=156.7

Q ss_pred             CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028251            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      |+|.+||+|+|++|||||||+++|+...+.+.+.++.+.++......+++..+.+.+||++|++.+..++..+++.+|++
T Consensus         1 ~~y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~   80 (166)
T d1z0fa1           1 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA   80 (166)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred             CcEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEE
Confidence            78999999999999999999999999999999998889999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Q 028251           83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK  162 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  162 (211)
                      |+|||+++++++..+..|+..+........|+++++||+|+........++++.+++..+++++++||++|.||+++|+.
T Consensus        81 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~  160 (166)
T d1z0fa1          81 LMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLE  160 (166)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999998887788999999999999887888889999999999999999999999999999999


Q ss_pred             HHHHH
Q 028251          163 TAAKI  167 (211)
Q Consensus       163 i~~~~  167 (211)
                      |++.+
T Consensus       161 i~~~i  165 (166)
T d1z0fa1         161 AAKKI  165 (166)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98876

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-36  Score=217.13  Aligned_cols=173  Identities=53%  Similarity=0.884  Sum_probs=157.9

Q ss_pred             CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028251            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      ||+.+||+|+|++|||||||+++|.++.+...+.++.+.+.....+..++..+.+.+||++|++.+...+..+++.+|++
T Consensus         1 ~~~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~   80 (175)
T d2f9la1           1 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGA   80 (175)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeE
Confidence            68999999999999999999999999999988888888888888899999999999999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Q 028251           83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK  162 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  162 (211)
                      |+|||++++.++..+..|+..+......+.|+++|+||+|+.+......+....+....+.+++++||++|.|++++|+.
T Consensus        81 i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~  160 (175)
T d2f9la1          81 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKN  160 (175)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHHHHHhhcccCceEEEEecCCCcCHHHHHHH
Confidence            99999999999999999999998888788999999999999877777778888888889999999999999999999999


Q ss_pred             HHHHHHHHHhhcc
Q 028251          163 TAAKILQNIQEGA  175 (211)
Q Consensus       163 i~~~~~~~~~~~~  175 (211)
                      +++.+.+..+..+
T Consensus       161 l~~~i~~~~~~~q  173 (175)
T d2f9la1         161 ILTEIYRIVSQKQ  173 (175)
T ss_dssp             HHHHHHHHHHTSC
T ss_pred             HHHHHHHHhhhcc
Confidence            9999887666543

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.4e-36  Score=220.59  Aligned_cols=176  Identities=48%  Similarity=0.870  Sum_probs=164.1

Q ss_pred             CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028251            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      +|++.+||+|+|++|||||||+++|..+.+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus         2 ~~~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~   81 (194)
T d2bcgy1           2 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG   81 (194)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred             CCCEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence            68999999999999999999999999999999999998999988889999999999999999999999999999999999


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028251           82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  161 (211)
                      +|+|||+++++++..+..|+..+.+......|+++++||+|+.+...+..++...++...++.++++||++|.|++++|+
T Consensus        82 ~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f~  161 (194)
T d2bcgy1          82 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFL  161 (194)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhHHHHhhhhhccCcceEEEecCcCccHHHHHH
Confidence            99999999999999999999988887778999999999999998888899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcccc
Q 028251          162 KTAAKILQNIQEGALD  177 (211)
Q Consensus       162 ~i~~~~~~~~~~~~~~  177 (211)
                      .|++.+.+........
T Consensus       162 ~l~~~i~~~~~~~~~~  177 (194)
T d2bcgy1         162 TMARQIKESMSQQNLN  177 (194)
T ss_dssp             HHHHHHHHHCCHHHHH
T ss_pred             HHHHHHHHHhhhcccC
Confidence            9999988766654444

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-36  Score=218.50  Aligned_cols=165  Identities=35%  Similarity=0.718  Sum_probs=149.1

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      |.+||+|+|.+|||||||+++|+.+.+.+.+.++.+.......+..++..+.+.+||++|++.+..++..+++.+|++|+
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   81 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   81 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence            67999999999999999999999999999999999999999989999999999999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Q 028251           85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA  164 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~  164 (211)
                      |||++++++|.++..|+..+........|+++++||+|+...+.++.++++.++++++++++++||++|.||+++|+.|+
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l~  161 (167)
T d1z08a1          82 VYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLC  161 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred             EEeCCchhHHHhhhhhhhhcccccccccceeeeccccccccccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHHHH
Confidence            99999999999999999888777667889999999999988888999999999999999999999999999999999999


Q ss_pred             HHHHH
Q 028251          165 AKILQ  169 (211)
Q Consensus       165 ~~~~~  169 (211)
                      +.+++
T Consensus       162 ~~i~~  166 (167)
T d1z08a1         162 KRMIE  166 (167)
T ss_dssp             HHHHC
T ss_pred             HHHhh
Confidence            98864

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.2e-36  Score=215.09  Aligned_cols=169  Identities=33%  Similarity=0.549  Sum_probs=152.8

Q ss_pred             CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028251            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      ....+||+|+|++|||||||+++|+.+.+.+.+.++. .+.....+.+++..+.+.+||++|++.+...+..+++.+|++
T Consensus         3 ~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~-~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~   81 (173)
T d2fn4a1           3 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTI-EDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF   81 (173)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTC-CEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred             CCCeEEEEEECCCCcCHHHHHHHHHhCCCCccccccc-ccceeeEeccCCeeeeeeccccccccccccccchhhccceee
Confidence            4577999999999999999999999999988888774 455556788999999999999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028251           83 LLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  161 (211)
                      |+|||++++.++..+..|+..+.+.. ..+.|+++|+||+|+.+.+....+++..++...+++|+++||++|.||+++|+
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~  161 (173)
T d2fn4a1          82 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFE  161 (173)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHH
T ss_pred             eeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHHHH
Confidence            99999999999999999999886643 46889999999999988778888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 028251          162 KTAAKILQNIQ  172 (211)
Q Consensus       162 ~i~~~~~~~~~  172 (211)
                      .|++.+.+..+
T Consensus       162 ~l~~~i~k~~~  172 (173)
T d2fn4a1         162 QLVRAVRKYQE  172 (173)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHhc
Confidence            99999876543

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.7e-36  Score=215.34  Aligned_cols=162  Identities=37%  Similarity=0.625  Sum_probs=152.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+++|++|||||||+++|..+.+...+.++.+.+........++..+.+.+||++|++.+..++..+++.+|++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            48999999999999999999999999999999989888888889999999999999999999999999999999999999


Q ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHH
Q 028251           86 YDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA  165 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~  165 (211)
                      ||++++.+++++..|++.+..... +.|+++|+||+|+.+.+.+..++++++++..+++++++||++|.||+++|+.|++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~  160 (164)
T d1z2aa1          82 FSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAE  160 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHC-SCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHH
T ss_pred             EeccchhhhhhcccccccccccCC-CceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHHHH
Confidence            999999999999999999877653 7999999999999888888999999999999999999999999999999999998


Q ss_pred             HHH
Q 028251          166 KIL  168 (211)
Q Consensus       166 ~~~  168 (211)
                      .++
T Consensus       161 ~~l  163 (164)
T d1z2aa1         161 KHL  163 (164)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            876

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-35  Score=214.36  Aligned_cols=170  Identities=82%  Similarity=1.282  Sum_probs=155.2

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      |.+||+|+|++|||||||+++|.+..+.+.+.++.+.+.........+..+.+.+||++|++.+..++..++..+|++|+
T Consensus         2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (173)
T d2a5ja1           2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   81 (173)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEE
Confidence            67899999999999999999999999999888888888888888889999999999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Q 028251           85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA  164 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~  164 (211)
                      |||++++.++..+..|+..+......+.|+++++||+|+...+....+++..++...+++|+++||++|.||+++|..|+
T Consensus        82 v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~i~  161 (173)
T d2a5ja1          82 VYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTA  161 (173)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHH
T ss_pred             EEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHH
Confidence            99999999999999999999888778899999999999988778888999999999999999999999999999999999


Q ss_pred             HHHHHHHhhc
Q 028251          165 AKILQNIQEG  174 (211)
Q Consensus       165 ~~~~~~~~~~  174 (211)
                      +.+.++..++
T Consensus       162 ~~i~~~~~~~  171 (173)
T d2a5ja1         162 KEIYRKIQQG  171 (173)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHcc
Confidence            9998877654

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.1e-36  Score=217.56  Aligned_cols=171  Identities=48%  Similarity=0.937  Sum_probs=131.4

Q ss_pred             CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028251            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      .|++.+||+|+|.++||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|+
T Consensus         2 ~~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~   81 (173)
T d2fu5c1           2 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   81 (173)
T ss_dssp             CCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSE
T ss_pred             cccEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCE
Confidence            48999999999999999999999999999888888888999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028251           82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  161 (211)
                      +|+|||++++.++..+..|+..+......+.|+++++||.|+........+++..++...+++++++||++|.|++++|+
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~  161 (173)
T d2fu5c1          82 IMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFF  161 (173)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHH
T ss_pred             EEEEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999999877778899999999999988778888889999999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 028251          162 KTAAKILQNIQ  172 (211)
Q Consensus       162 ~i~~~~~~~~~  172 (211)
                      +|++.+.++.+
T Consensus       162 ~l~~~i~~k~~  172 (173)
T d2fu5c1         162 TLARDIKAKMD  172 (173)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhcC
Confidence            99999977654

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-35  Score=211.76  Aligned_cols=164  Identities=27%  Similarity=0.368  Sum_probs=134.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+|+|++|||||||+++|.+..+... .++ +.......+.+++..+.+.+||++|++.+..++..+++.+|++|+||
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~-~~~-~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~   79 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGPE-AEA-AGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   79 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC-----------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCCc-CCe-eeeeecceeeccccccceeeeecccccccceecccchhhhhhhceec
Confidence            7999999999999999999998765443 333 33444556788999999999999999999999999999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHH
Q 028251           87 DITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA  165 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~  165 (211)
                      |++++.++..+..|+..+..... ...|+++|+||+|+.+.++++.++++.++...+++|+++||++|.|++++|+.|++
T Consensus        80 d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~~  159 (168)
T d2gjsa1          80 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVR  159 (168)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHH
T ss_pred             cccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHHH
Confidence            99999999999999999877653 57899999999999888888899999999999999999999999999999999999


Q ss_pred             HHHHHHh
Q 028251          166 KILQNIQ  172 (211)
Q Consensus       166 ~~~~~~~  172 (211)
                      .+..+..
T Consensus       160 ~i~~~~~  166 (168)
T d2gjsa1         160 QIRLRRD  166 (168)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            8877654

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=1.8e-35  Score=212.51  Aligned_cols=163  Identities=36%  Similarity=0.565  Sum_probs=147.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+|+|++|||||||+++|+.+.+...+.++.+..+. ..+.+++..+.+.+||++|++.+..++..+++.+|++|+|
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~-~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (168)
T d1u8za_           4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV   82 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccc-cccccccccccccccccccccchhhhhhhcccccceeEEE
Confidence            579999999999999999999999999888888887764 4577899999999999999999999999999999999999


Q ss_pred             EECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Q 028251           86 YDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA  164 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~  164 (211)
                      ||++++.++..+..|+..+.+.. .++.|+++|+||+|+.+.+.++.++++.+++..+++++++||++|.|++++|++|+
T Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~  162 (168)
T d1u8za_          83 FSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLM  162 (168)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             eeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHHH
Confidence            99999999999999999887654 46899999999999988888899999999999999999999999999999999999


Q ss_pred             HHHHH
Q 028251          165 AKILQ  169 (211)
Q Consensus       165 ~~~~~  169 (211)
                      +.+.+
T Consensus       163 ~~i~~  167 (168)
T d1u8za_         163 REIRA  167 (168)
T ss_dssp             HHHHT
T ss_pred             HHHHC
Confidence            88754

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-35  Score=211.28  Aligned_cols=161  Identities=43%  Similarity=0.766  Sum_probs=152.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+|+|.+|||||||+++|..+.+.+.+.++.+..........++..+.+.+||++|++.+...+..++..+|++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            58999999999999999999999999999999898988888888999999999999999999999999999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHH
Q 028251           87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK  166 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~  166 (211)
                      |++++.++.++..|+..+......+.|+++|+||+|+.+......+++.++++.++++|+++||++|.||+++|++|.++
T Consensus        81 d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~~~  160 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA  160 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             ccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHh
Confidence            99999999999999999888777789999999999998878888899999999999999999999999999999999886


Q ss_pred             H
Q 028251          167 I  167 (211)
Q Consensus       167 ~  167 (211)
                      +
T Consensus       161 l  161 (164)
T d1yzqa1         161 L  161 (164)
T ss_dssp             S
T ss_pred             h
Confidence            5

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.1e-36  Score=217.47  Aligned_cols=172  Identities=38%  Similarity=0.740  Sum_probs=154.5

Q ss_pred             CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECC----------EEEEEEEEeCCCccchhhc
Q 028251            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDG----------RPIKLQIWDTAGQESFRSI   71 (211)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~l~l~D~~G~~~~~~~   71 (211)
                      +|++.+||+|+|++|||||||+++|+++.+...+.++.+.++....+.+++          ..+.+.+||++|++.+..+
T Consensus         1 ~~d~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~   80 (186)
T d2f7sa1           1 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL   80 (186)
T ss_dssp             CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH
T ss_pred             CCCEEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHH
Confidence            589999999999999999999999999999888888888887777666543          3468999999999999999


Q ss_pred             hHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeC
Q 028251           72 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASA  150 (211)
Q Consensus        72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~  150 (211)
                      +..+++.+|++|+|||++++.++..+..|+..+.... ....|+++|+||.|+.+.+.+..+++.++++.++++++++||
T Consensus        81 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sa  160 (186)
T d2f7sa1          81 TTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSA  160 (186)
T ss_dssp             HHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBT
T ss_pred             HHHHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHHHcCCEEEEEeC
Confidence            9999999999999999999999999999988776543 357889999999999888889999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhh
Q 028251          151 RTAQNVEEAFIKTAAKILQNIQE  173 (211)
Q Consensus       151 ~~~~~i~~~~~~i~~~~~~~~~~  173 (211)
                      ++|.|++++|+.|.+.+.++.++
T Consensus       161 k~~~~i~e~f~~l~~~i~~k~~~  183 (186)
T d2f7sa1         161 ATGQNVEKAVETLLDLIMKRMEQ  183 (186)
T ss_dssp             TTTBTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999877654

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.3e-35  Score=208.58  Aligned_cols=163  Identities=40%  Similarity=0.761  Sum_probs=154.5

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      +.+||+|+|.+|||||||+++|..+.+.+.+.++.+..........++....+.+||++|++.+..++..++..+|++|+
T Consensus         3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (167)
T d1z0ja1           3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII   82 (167)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceEE
Confidence            56899999999999999999999999999999999999998888899999999999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Q 028251           85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA  164 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~  164 (211)
                      |||+++++++..+..|+..+......+.|+++|+||+|+.+.+.+..+++++++...+++|+++||++|.||+++|..|.
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~l~  162 (167)
T d1z0ja1          83 VYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEIS  162 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             EeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHH
Confidence            99999999999999999988888878999999999999988788899999999999999999999999999999999998


Q ss_pred             HHH
Q 028251          165 AKI  167 (211)
Q Consensus       165 ~~~  167 (211)
                      +.+
T Consensus       163 ~~i  165 (167)
T d1z0ja1         163 RRI  165 (167)
T ss_dssp             HHC
T ss_pred             HhC
Confidence            875

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.5e-35  Score=208.94  Aligned_cols=164  Identities=34%  Similarity=0.578  Sum_probs=149.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+++|++|||||||+++|.++.+.+.+.++.+..+ ...+.+++..+.+.+||++|.+.+...+..+++.+|++++|
T Consensus         4 t~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv   82 (169)
T d1x1ra1           4 TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIV   82 (169)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeecc-ccccccccccccccccccccccccccchhhhhhhccEEEEe
Confidence            58999999999999999999999999888888876555 45578899999999999999999999999999999999999


Q ss_pred             EECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCC-CHHHHHHHH
Q 028251           86 YDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQ-NVEEAFIKT  163 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~i~~~~~~i  163 (211)
                      ||++++.+|.++..|+..+.+.. ..+.|+++++||+|+...+.++.+++.+++++++++|+++||+++. ||+++|+.|
T Consensus        83 ~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~~l  162 (169)
T d1x1ra1          83 YSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDL  162 (169)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHH
T ss_pred             cccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHHHH
Confidence            99999999999999999987664 4689999999999998888899999999999999999999999875 999999999


Q ss_pred             HHHHHHH
Q 028251          164 AAKILQN  170 (211)
Q Consensus       164 ~~~~~~~  170 (211)
                      ++.+.++
T Consensus       163 ~~~i~~~  169 (169)
T d1x1ra1         163 VRVIRQQ  169 (169)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhC
Confidence            9988763

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-35  Score=210.05  Aligned_cols=164  Identities=32%  Similarity=0.472  Sum_probs=150.1

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      .+.+||+|+|++|||||||+++|+.+.+.+.+.++.+..+. ..+.+++..+.+.+||++|.+.+..++..++..+|++|
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~i   80 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   80 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEE-EEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEE
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccc-eEEecCcEEEEeeecccccccccccccchhhhhhhhhh
Confidence            35689999999999999999999999998888888887764 56789999999999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Q 028251           84 LVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK  162 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  162 (211)
                      +|||+++++++..+..|+..+.... ..+.|+++++||+|+...+.++.+++.+++++++++|+++||++|.||+++|+.
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  160 (167)
T d1xtqa1          81 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR  160 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHH
T ss_pred             hhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHH
Confidence            9999999999999999998886654 467999999999999887888999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 028251          163 TAAKIL  168 (211)
Q Consensus       163 i~~~~~  168 (211)
                      |++.+.
T Consensus       161 li~~~~  166 (167)
T d1xtqa1         161 IILEAE  166 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            988764

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-34  Score=208.18  Aligned_cols=166  Identities=46%  Similarity=0.858  Sum_probs=145.6

Q ss_pred             CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCC-CCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028251            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      |++.+||+|+|+++||||||+++|+.+.+.+. ..++.+.++....+..++..+.+.+|||||++.+..++..+++.+|+
T Consensus         3 ~d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~   82 (170)
T d2g6ba1           3 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA   82 (170)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred             CceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCce
Confidence            88999999999999999999999999887654 44556788888888999999999999999999999999999999999


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028251           82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  161 (211)
                      +++|||++++.++..+..|+..+........|+++++||.|+.....+..+++..+++..+++++++||++|.||+++|+
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~  162 (170)
T d2g6ba1          83 LLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFT  162 (170)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             eEEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence            99999999999999999999888887777899999999999988888899999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 028251          162 KTAAKIL  168 (211)
Q Consensus       162 ~i~~~~~  168 (211)
                      +|++.+.
T Consensus       163 ~l~~~i~  169 (170)
T d2g6ba1         163 AIAKELK  169 (170)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHcC
Confidence            9998874

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-34  Score=207.92  Aligned_cols=164  Identities=35%  Similarity=0.584  Sum_probs=145.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+|+|++|||||||+++|..+.+.+.+.++.+ ......+.+++..+.+.+||++|.+.+......++..+|++++|
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   83 (171)
T d2erya1           5 KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLV   83 (171)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccc-cceeeeeeecccccccccccccccccccccccccccccceEEEe
Confidence            47999999999999999999999999888888866 44556678899999999999999999999999999999999999


Q ss_pred             EECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Q 028251           86 YDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA  164 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~  164 (211)
                      ||++++.++..+..|+..+.... ....|+++|+||+|+.....+..+++..+++..+++|+++||++|.||+++|..|+
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l~  163 (171)
T d2erya1          84 FSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELV  163 (171)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             eccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHHHH
Confidence            99999999999999998776544 35799999999999988888899999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 028251          165 AKILQN  170 (211)
Q Consensus       165 ~~~~~~  170 (211)
                      +.+.+.
T Consensus       164 ~~i~k~  169 (171)
T d2erya1         164 RVIRKF  169 (171)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            988654

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-34  Score=206.65  Aligned_cols=163  Identities=44%  Similarity=0.805  Sum_probs=153.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+++|++|||||||+++|..+.+.+.+.++.+.+.....+..+...+.+.+||++|++.+...+..+++.+|++|+|
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   85 (170)
T d1r2qa_           6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVV   85 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEEE
Confidence            47999999999999999999999999999999999999888889999999999999999999999999999999999999


Q ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHH
Q 028251           86 YDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA  165 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~  165 (211)
                      ||+.++.++.++..|+..+.+...++.|+++++||+|+...+.++.+++..++...+++|+++||++|.||+++|+.|++
T Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~l~~  165 (170)
T d1r2qa_          86 YDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK  165 (170)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             eccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHHHHH
Confidence            99999999999999999998877789999999999999888889999999999999999999999999999999999987


Q ss_pred             HHH
Q 028251          166 KIL  168 (211)
Q Consensus       166 ~~~  168 (211)
                      .+.
T Consensus       166 ~i~  168 (170)
T d1r2qa_         166 KLP  168 (170)
T ss_dssp             TSC
T ss_pred             HHh
Confidence            653

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.4e-34  Score=208.85  Aligned_cols=162  Identities=26%  Similarity=0.471  Sum_probs=142.9

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ..+||+++|++|||||||+++|..+.+...+.++.+... ......++..+.+.+||++|++++...+..+++.+|++|+
T Consensus         2 ~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il   80 (191)
T d2ngra_           2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV   80 (191)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeec-ceeEeeCCceeeeeccccccchhhhhhhhhcccccceeec
Confidence            368999999999999999999999999988888877544 4557788999999999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCC------------CCCCCHHHHHHHHHHcC-CcEEEEeCC
Q 028251           85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH------------RRAVSKEEGEQFAKENG-LLFLEASAR  151 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~s~~  151 (211)
                      |||++++++|+++..|+.........+.|+++++||+|+.+            ...+..+++.+++...+ .+|+++||+
T Consensus        81 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk  160 (191)
T d2ngra_          81 CFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSAL  160 (191)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTT
T ss_pred             ccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCC
Confidence            99999999999998876666555567899999999999853            24578889999999865 689999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 028251          152 TAQNVEEAFIKTAAKI  167 (211)
Q Consensus       152 ~~~~i~~~~~~i~~~~  167 (211)
                      +|.||+++|+.+++.+
T Consensus       161 ~~~~V~e~f~~l~~~~  176 (191)
T d2ngra_         161 TQKGLKNVFDEAILAA  176 (191)
T ss_dssp             TCTTHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHH
Confidence            9999999999988766

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-35  Score=210.35  Aligned_cols=161  Identities=31%  Similarity=0.457  Sum_probs=145.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+|+|++|||||||+++|+.+.+.+.+.++.+..+.. ...+++..+.+.+||++|.+.+...+..++..+|++|+|
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~-~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   80 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQ-VISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   80 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEE-EEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeecccc-ceeeccccceeccccccccccccccccccccceeEEEEE
Confidence            5799999999999999999999999988888887766544 467899999999999999999999999999999999999


Q ss_pred             EECCCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Q 028251           86 YDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT  163 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i  163 (211)
                      ||+++++++.++..|+..+.....  .+.|+++|+||+|+...+.++.++++++++.++++++++||++|.||+++|+.|
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l  160 (171)
T d2erxa1          81 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL  160 (171)
T ss_dssp             EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred             eecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHH
Confidence            999999999999999988866443  678999999999998888889999999999999999999999999999999998


Q ss_pred             HHHH
Q 028251          164 AAKI  167 (211)
Q Consensus       164 ~~~~  167 (211)
                      ++.+
T Consensus       161 ~~~~  164 (171)
T d2erxa1         161 LNLE  164 (171)
T ss_dssp             HHTC
T ss_pred             HHHH
Confidence            8754

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-34  Score=205.66  Aligned_cols=163  Identities=37%  Similarity=0.521  Sum_probs=144.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+|+|++|||||||+++|+.+.+.+.+.++.+..+... +..++..+.+.+||++|.+.+. ....++..+|++++|
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~-~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv   79 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQ-ATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEE-EEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceecccccc-ccccccceEEEEeecccccccc-cchhhhcccccceee
Confidence            37999999999999999999999999999999988877554 5678999999999999998765 466788999999999


Q ss_pred             EECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCC-CHHHHHHHH
Q 028251           86 YDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQ-NVEEAFIKT  163 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~i~~~~~~i  163 (211)
                      ||++++.++..+..|+..+.... ..+.|+++|+||+|+.+.+.++.++++.++.+.+++|+++||++|. +|+++|..|
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~l  159 (168)
T d2atva1          80 YDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL  159 (168)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHH
T ss_pred             cccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHHH
Confidence            99999999999998876665433 3689999999999998877889999999999999999999999998 599999999


Q ss_pred             HHHHHHH
Q 028251          164 AAKILQN  170 (211)
Q Consensus       164 ~~~~~~~  170 (211)
                      ++.+.++
T Consensus       160 ~~~i~~~  166 (168)
T d2atva1         160 CREVRRR  166 (168)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9988765

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-34  Score=209.49  Aligned_cols=164  Identities=27%  Similarity=0.472  Sum_probs=143.9

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ...+||+|+|.+|||||||+++|+.+.+.+.+.++.+.. ....+..++..+.+.+||++|++.+...+..+++.+|+++
T Consensus         7 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~-~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~i   85 (185)
T d2atxa1           7 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDH-YAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL   85 (185)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCC-EEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeee-eeEEEeeCCceEEeecccccccchhhhhhhhcccccceee
Confidence            467999999999999999999999999988888887644 4455677888999999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCC------------CCCCCHHHHHHHHHHcC-CcEEEEeC
Q 028251           84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH------------RRAVSKEEGEQFAKENG-LLFLEASA  150 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~s~  150 (211)
                      +|||++++++|+++..|+....+....+.|+++|+||+|+.+            .+.++.+++.+++..++ +.|+++||
T Consensus        86 lv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~SA  165 (185)
T d2atxa1          86 ICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSA  165 (185)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCT
T ss_pred             eccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEEecC
Confidence            999999999999887666665555556899999999999864            35678889999999887 68999999


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q 028251          151 RTAQNVEEAFIKTAAKIL  168 (211)
Q Consensus       151 ~~~~~i~~~~~~i~~~~~  168 (211)
                      ++|.||+++|+.++++++
T Consensus       166 k~~~gv~e~F~~li~~il  183 (185)
T d2atxa1         166 LTQKGLKTVFDEAIIAIL  183 (185)
T ss_dssp             TTCTTHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHc
Confidence            999999999999998874

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-34  Score=206.47  Aligned_cols=162  Identities=31%  Similarity=0.513  Sum_probs=143.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      +.||+|+|++|||||||+++|..+.+.+.+.++.+ .........++..+.+.+||++|++.+...+..+++.+|++|+|
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC   80 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eeccccccccccceeeeccccCccchhcccchhhcccchhhhhh
Confidence            57999999999999999999999999888888866 44455678899999999999999999999999999999999999


Q ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcC-CcEEEEeCCC
Q 028251           86 YDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENG-LLFLEASART  152 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~s~~~  152 (211)
                      ||++++.+|+++..|+..+.....++.|+++++||+|+.+.            +.+..+++..+++..+ .+|+++||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt  160 (177)
T d1kmqa_          81 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT  160 (177)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred             cccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCC
Confidence            99999999999888776665555568999999999999642            4577888999999988 4799999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 028251          153 AQNVEEAFIKTAAKIL  168 (211)
Q Consensus       153 ~~~i~~~~~~i~~~~~  168 (211)
                      |.||+++|+.+.+.++
T Consensus       161 ~~gi~e~F~~i~~~~l  176 (177)
T d1kmqa_         161 KDGVREVFEMATRAAL  176 (177)
T ss_dssp             CTTHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHh
Confidence            9999999999998876

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-34  Score=205.10  Aligned_cols=163  Identities=33%  Similarity=0.546  Sum_probs=148.2

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      +.+||+++|++|||||||+++|+.+.+.+.+.++.+. .......+++..+.+.+||++|++.+...+..+++.+|++++
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   80 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIED-FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceee-eeeeeeecCcceEeeccccCCCccccccchHHHhhcccceee
Confidence            4689999999999999999999999998888888664 455667889999999999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Q 028251           85 VYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT  163 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i  163 (211)
                      |||++++.++.++..|+..+..... .+.|+++|+||+|+...+....+++..+++..+++++++||++|.|++++|+.|
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~i  160 (167)
T d1kaoa_          81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI  160 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred             eeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHHH
Confidence            9999999999999999988876543 679999999999998877888899999999999999999999999999999999


Q ss_pred             HHHHH
Q 028251          164 AAKIL  168 (211)
Q Consensus       164 ~~~~~  168 (211)
                      ++.+.
T Consensus       161 ~~~i~  165 (167)
T d1kaoa_         161 VRQMN  165 (167)
T ss_dssp             HHHHH
T ss_pred             HHHHc
Confidence            88764

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.4e-34  Score=203.84  Aligned_cols=163  Identities=42%  Similarity=0.764  Sum_probs=151.1

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ..+||+++|++|||||||+++|..+.+.+.+.++.+.++....+..++..+.+.+||++|++.+..++..++..+|++|+
T Consensus         2 ~~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1ek0a_           2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             cEEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEE
Confidence            36899999999999999999999999999999999999988889999999999999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCC---CCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028251           85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH---RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI  161 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  161 (211)
                      |||++++.++.++..|+..+........|+++++||+|+.+   .+.+..+++.++++..+++|+++||++|.||+++|.
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~  161 (170)
T d1ek0a_          82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EEeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHH
Confidence            99999999999999999888887777899999999999853   357788999999999999999999999999999999


Q ss_pred             HHHHHH
Q 028251          162 KTAAKI  167 (211)
Q Consensus       162 ~i~~~~  167 (211)
                      .|.+.+
T Consensus       162 ~i~~~i  167 (170)
T d1ek0a_         162 GIGEKI  167 (170)
T ss_dssp             HHHTTS
T ss_pred             HHHHHh
Confidence            887654

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-33  Score=202.61  Aligned_cols=163  Identities=37%  Similarity=0.585  Sum_probs=147.2

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      +.+||+|+|++|||||||+++|..+.+.+.+.++.+..+. ..+..++..+.+.+||++|++.+...+..+++.+|++|+
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   80 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccc-eeEEeeeeEEEeccccccCcccccccccccccccceeEE
Confidence            4689999999999999999999999999988888776664 446788889999999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-cCCcEEEEeCCCCCCHHHHHHH
Q 028251           85 VYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIK  162 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~i~~~~~~  162 (211)
                      |||++++.+|+++..|+..+.+.. .++.|+++|+||+|+........+++..++.+ .+++++++||++|.||+++|++
T Consensus        81 v~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~~  160 (167)
T d1c1ya_          81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD  160 (167)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred             eeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHHH
Confidence            999999999999999999887654 46899999999999988888888888888887 4789999999999999999999


Q ss_pred             HHHHHH
Q 028251          163 TAAKIL  168 (211)
Q Consensus       163 i~~~~~  168 (211)
                      |++.+.
T Consensus       161 l~~~i~  166 (167)
T d1c1ya_         161 LVRQIN  166 (167)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            998763

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-33  Score=202.55  Aligned_cols=164  Identities=48%  Similarity=0.899  Sum_probs=146.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+++|++|||||||+++|+.+.+.+.+.++.+.++....+.+++..+.+.+|||||++.+..++..+++++|++|+|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHH
Q 028251           86 YDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA  165 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~  165 (211)
                      ||++++.++..+..|+..+........|++++++|.|+.. +....++++.++...+++++++||++|.|++++|++|.+
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~~  160 (166)
T d1g16a_          82 YDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK  160 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT-CCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             EECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhh-hhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHHHH
Confidence            9999999999999999888888878899999999999854 456678999999999999999999999999999999999


Q ss_pred             HHHHH
Q 028251          166 KILQN  170 (211)
Q Consensus       166 ~~~~~  170 (211)
                      .+.++
T Consensus       161 ~i~~k  165 (166)
T d1g16a_         161 LIQEK  165 (166)
T ss_dssp             HHHHT
T ss_pred             HHHhc
Confidence            88764

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-35  Score=210.13  Aligned_cols=162  Identities=31%  Similarity=0.590  Sum_probs=141.9

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      -.+||+++|++|||||||+++|+.+.+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++.+|++++
T Consensus         2 ~~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1i2ma_           2 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAII   81 (170)
T ss_dssp             EEEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhh
Confidence            36899999999999999999999999999888998999988888889999999999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Q 028251           85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA  164 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~  164 (211)
                      |||++++++++++..|+..+.+.. .+.|+++|+||+|+......  ++...++...+++|+++||++|.||+++|++|.
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~--~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~  158 (170)
T d1i2ma_          82 MFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA  158 (170)
T ss_dssp             EEETTSGGGGTTHHHHHHHHHHHH-CSCCEEEEEECCCCSCSCCT--TTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHHH
T ss_pred             ccccccccccchhHHHHHHHhhcc-CCCceeeecchhhhhhhhhh--hHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            999999999999999999887765 48999999999999765432  345577778899999999999999999999999


Q ss_pred             HHHHH
Q 028251          165 AKILQ  169 (211)
Q Consensus       165 ~~~~~  169 (211)
                      +.++.
T Consensus       159 ~~l~~  163 (170)
T d1i2ma_         159 RKLIG  163 (170)
T ss_dssp             HHHHT
T ss_pred             HHHcc
Confidence            98864

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.5e-33  Score=198.67  Aligned_cols=162  Identities=35%  Similarity=0.618  Sum_probs=146.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+|+|++|||||||+++|+++.+...+.++.+..+... +..++..+.+.+||++|.+.+...+..++..++++++|
T Consensus         3 e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv   81 (166)
T d1ctqa_           3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEE-EEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccc-eeeeceeeeeeeeeccCccccccchhhhhhccccccee
Confidence            48999999999999999999999999988888888777655 56788899999999999999999999999999999999


Q ss_pred             EECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Q 028251           86 YDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA  164 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~  164 (211)
                      ||++++.+++.+..|+..+..... .+.|+++++||+|+.. +....++++++++..+++++++||++|.||+++|..|+
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~i~  160 (166)
T d1ctqa_          82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV  160 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             ecccccccHHHHHHHHHHHHHhcCCCCCeEEEEeccccccc-ccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHHH
Confidence            999999999999999999877653 5799999999999864 45678899999999999999999999999999999999


Q ss_pred             HHHHH
Q 028251          165 AKILQ  169 (211)
Q Consensus       165 ~~~~~  169 (211)
                      +.+.+
T Consensus       161 ~~i~~  165 (166)
T d1ctqa_         161 REIRQ  165 (166)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            88753

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-32  Score=199.10  Aligned_cols=167  Identities=49%  Similarity=0.841  Sum_probs=152.8

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ..+||+|+|++|||||||+++|.++.+.+.+.++.+.......+.+++..+.+.+|||||++.+..++..++..+|++|+
T Consensus         6 ~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~   85 (177)
T d1x3sa1           6 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL   85 (177)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            46899999999999999999999999999999888898888889999999999999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Q 028251           85 VYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT  163 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i  163 (211)
                      |||++++.++..+..|+..+.+.. ....|+++++||.|... ..+..+++..++...+++++++||++|.|++++|++|
T Consensus        86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~-~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f~~l  164 (177)
T d1x3sa1          86 VYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEEL  164 (177)
T ss_dssp             EEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEECCCccccccchhhhhhhcccccccceeeEEEeecccccc-ccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHH
Confidence            999999999999999999887654 35789999999999754 5677889999999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q 028251          164 AAKILQNIQ  172 (211)
Q Consensus       164 ~~~~~~~~~  172 (211)
                      ++.+++...
T Consensus       165 ~~~l~~~p~  173 (177)
T d1x3sa1         165 VEKIIQTPG  173 (177)
T ss_dssp             HHHHHTSGG
T ss_pred             HHHHccCcc
Confidence            999986643

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.3e-33  Score=201.79  Aligned_cols=165  Identities=30%  Similarity=0.527  Sum_probs=143.6

Q ss_pred             CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028251            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      ++..+||+|+|++|||||||+++|+.+.+...+.++.+... ...+..++..+.+.+||++|++.+...+..+++.+|++
T Consensus         2 ~p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   80 (183)
T d1mh1a_           2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVS   80 (183)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred             CceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeece-eeeeeccCcceEEEeecccccccchhhhhhccccccee
Confidence            46789999999999999999999999999988888876544 45577899999999999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcC-CcEEEEe
Q 028251           83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENG-LLFLEAS  149 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~s  149 (211)
                      |+|||++++.+|+++..|+....+....+.|+++|+||+|+.+.            ......++..+++..+ +.|+++|
T Consensus        81 ilv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~S  160 (183)
T d1mh1a_          81 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  160 (183)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             eeeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcC
Confidence            99999999999999987665555555568999999999998542            3456677888888877 6899999


Q ss_pred             CCCCCCHHHHHHHHHHHHH
Q 028251          150 ARTAQNVEEAFIKTAAKIL  168 (211)
Q Consensus       150 ~~~~~~i~~~~~~i~~~~~  168 (211)
                      |++|.||+++|+.|++.++
T Consensus       161 Ak~~~~V~e~F~~l~~~il  179 (183)
T d1mh1a_         161 ALTQRGLKTVFDEAIRAVL  179 (183)
T ss_dssp             TTTCTTHHHHHHHHHHHHS
T ss_pred             CCCCcCHHHHHHHHHHHHc
Confidence            9999999999999998875

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.9e-33  Score=200.10  Aligned_cols=166  Identities=36%  Similarity=0.665  Sum_probs=132.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEE-CCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTI-DGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      .+||+++|++|||||||+++|.++.+.+.+.++.+.......... +.....+.+||++|++.+...+..+++.+|++++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   81 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL   81 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence            589999999999999999999999998888887776666655544 3445678999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhcC----CCCeEEEEEecCCCCCCC-CCCHHHHHHHHHHcC-CcEEEEeCCCCCCHHH
Q 028251           85 VYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKCDLAHRR-AVSKEEGEQFAKENG-LLFLEASARTAQNVEE  158 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~-~~~~~~s~~~~~~i~~  158 (211)
                      |||++++.++..+..|+..+.....    .+.|+++++||+|+.+.+ .+..+++++++...+ .+++++||++|.||++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~e  161 (175)
T d1ky3a_          82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDT  161 (175)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHH
T ss_pred             EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Confidence            9999999999999999988866432    478999999999997643 467788899998875 7899999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028251          159 AFIKTAAKILQNI  171 (211)
Q Consensus       159 ~~~~i~~~~~~~~  171 (211)
                      +|++|++.++++.
T Consensus       162 ~f~~l~~~~l~~~  174 (175)
T d1ky3a_         162 AFEEIARSALQQN  174 (175)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999998765

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.2e-32  Score=200.50  Aligned_cols=170  Identities=40%  Similarity=0.688  Sum_probs=151.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+|+|.+|||||||+++|+++.+...+.++.+.+.........+..+.+.+||++|...+...+..++..+|++|+|
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   81 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLV   81 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEe
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCHHHHHHHHHHHHHHHHhcC----CCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-cCCcEEEEeCCCCCCHHHHH
Q 028251           86 YDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF  160 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~i~~~~  160 (211)
                      ||.+++.++..+..|+..+.....    .+.|+++|+||+|+.+. ....++...++.. .+++++++||++|.||+++|
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f  160 (184)
T d1vg8a_          82 FDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR-QVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF  160 (184)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC-CSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHH
T ss_pred             ecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeeccccc-chhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHH
Confidence            999999999999999988866542    46899999999998764 4666777777655 57899999999999999999


Q ss_pred             HHHHHHHHHHHhhccc
Q 028251          161 IKTAAKILQNIQEGAL  176 (211)
Q Consensus       161 ~~i~~~~~~~~~~~~~  176 (211)
                      ++|++.++++......
T Consensus       161 ~~l~~~i~~~~~~~~~  176 (184)
T d1vg8a_         161 QTIARNALKQETEVEL  176 (184)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccccc
Confidence            9999999887765433

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-32  Score=195.59  Aligned_cols=164  Identities=38%  Similarity=0.700  Sum_probs=145.2

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ..+||+|+|+++||||||+++|..+.+.+.+.++.+..........++..+.+.+||++|.......+..++..+|++++
T Consensus         5 ~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   84 (174)
T d1wmsa_           5 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLL   84 (174)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEEE
Confidence            45799999999999999999999999999999998999888888899999999999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhcC----CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHc-CCcEEEEeCCCCCCHHHH
Q 028251           85 VYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN-GLLFLEASARTAQNVEEA  159 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~i~~~  159 (211)
                      +||.+++.++..+..|+..+.....    .+.|+++|+||+|+.+ +.+..++++.++++. .++|+++||++|.||+++
T Consensus        85 ~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~-~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~  163 (174)
T d1wmsa_          85 TFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAA  163 (174)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS-CSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHH
T ss_pred             EEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhh-ccCcHHHHHHHHHHcCCCeEEEEcCCCCcCHHHH
Confidence            9999999999999999988766432    4789999999999964 567889999999886 479999999999999999


Q ss_pred             HHHHHHHHHH
Q 028251          160 FIKTAAKILQ  169 (211)
Q Consensus       160 ~~~i~~~~~~  169 (211)
                      |+.|++.+++
T Consensus       164 f~~l~~~il~  173 (174)
T d1wmsa_         164 FEEAVRRVLA  173 (174)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhc
Confidence            9999988864

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.6e-33  Score=198.93  Aligned_cols=165  Identities=27%  Similarity=0.381  Sum_probs=140.6

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCeeeEEEEEEEEECCEEEEEEEEeCCC---ccchhhchHHHhcccc
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAG---QESFRSITRSYYRGAA   80 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G---~~~~~~~~~~~~~~~d   80 (211)
                      ..+||+++|++|+|||||+++|.+..+.. ...++.+.+.....+.+++..+.+.+||+++   ++++  ++..+++.+|
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~   79 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGD   79 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCS
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccc
Confidence            35899999999999999999999876643 3445567777778888999999999999775   4433  5667789999


Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Q 028251           81 GALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEA  159 (211)
Q Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~  159 (211)
                      ++|+|||++++.++.++..|+..+.... .++.|+++|+||+|+.+.++++.+++++++...+++|+++||++|.|++++
T Consensus        80 ~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~  159 (172)
T d2g3ya1          80 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKEL  159 (172)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred             eeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHH
Confidence            9999999999999999999998886653 368999999999999888888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028251          160 FIKTAAKILQNI  171 (211)
Q Consensus       160 ~~~i~~~~~~~~  171 (211)
                      |+.|++.+..+.
T Consensus       160 f~~l~~~i~~rr  171 (172)
T d2g3ya1         160 FEGIVRQVRLRR  171 (172)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcc
Confidence            999999886653

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.7e-32  Score=194.41  Aligned_cols=158  Identities=42%  Similarity=0.808  Sum_probs=144.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh-chHHHhccccEEEE
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS-ITRSYYRGAAGALL   84 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~-~~~~~~~~~d~~i~   84 (211)
                      .+||+|+|++|||||||+++|+.+.+.+.+.++.+.........+......+.+||++|...... .+..++..+|++|+
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il   81 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceEE
Confidence            68999999999999999999999999999999888888888889999999999999999887765 46778999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCC---CCCHHHHH
Q 028251           85 VYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASART---AQNVEEAF  160 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~~i~~~~  160 (211)
                      |||+++++++..+..|+..+.... ..+.|++||+||+|+.+.+.++.++++++++.++++++++||++   ++||+++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e~F  161 (165)
T d1z06a1          82 VYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIF  161 (165)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHH
T ss_pred             EEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHHHH
Confidence            999999999999999999887754 36899999999999988888899999999999999999999987   56999999


Q ss_pred             HHH
Q 028251          161 IKT  163 (211)
Q Consensus       161 ~~i  163 (211)
                      ++|
T Consensus       162 ~~l  164 (165)
T d1z06a1         162 MTL  164 (165)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            876

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.1e-32  Score=198.32  Aligned_cols=163  Identities=28%  Similarity=0.464  Sum_probs=142.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+++|++|||||||+++|+.+.+.+.+.++.+... ...+.+++..+.+.+||++|++.+...+..+++.+|++|+|
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC   80 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecc-cccccccceEEeeccccccccccccccccchhhhhhhhhee
Confidence            58999999999999999999999999888888866544 44567889999999999999999999999999999999999


Q ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCC------------CCCCCHHHHHHHHHHcCC-cEEEEeCCC
Q 028251           86 YDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH------------RRAVSKEEGEQFAKENGL-LFLEASART  152 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~s~~~  152 (211)
                      ||++++++|+.+..|+.........+.|+++|+||+|+..            ...++.+++..+++..+. .|+++||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~  160 (179)
T d1m7ba_          81 FDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ  160 (179)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTT
T ss_pred             eecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCC
Confidence            9999999999998877666555556899999999999853            345788899999998775 799999999


Q ss_pred             CC-CHHHHHHHHHHHHHH
Q 028251          153 AQ-NVEEAFIKTAAKILQ  169 (211)
Q Consensus       153 ~~-~i~~~~~~i~~~~~~  169 (211)
                      |. +++++|+.+.+.++.
T Consensus       161 ~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         161 SENSVRDIFHVATLACVN  178 (179)
T ss_dssp             BHHHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHhc
Confidence            98 599999999988864

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=2.8e-30  Score=186.30  Aligned_cols=162  Identities=19%  Similarity=0.334  Sum_probs=135.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+++|++|||||||+++|+.+.+.+. .++.+..+ ...+.+++..+.+.+||++|+..+     .+++.+|++|+|
T Consensus         5 ~~ki~vlG~~~vGKTsLi~~~~~~~f~~~-~~t~~~~~-~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~ilV   77 (175)
T d2bmja1           5 ELRLGVLGDARSGKSSLIHRFLTGSYQVL-EKTESEQY-KKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIFV   77 (175)
T ss_dssp             EEEEEEECCTTTTHHHHHHHHHHSCCCCC-CCSSCEEE-EEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCc-CCccceeE-EEEeecCceEEEEEEeeccccccc-----ccccccceeEEE
Confidence            58999999999999999999999988654 34434444 566789999999999999998754     478889999999


Q ss_pred             EECCCHHHHHHHHHHHHHHHHhc---CCCCeEEEEEecCCCCC--CCCCCHHHHHHHHHH-cCCcEEEEeCCCCCCHHHH
Q 028251           86 YDITRRETFNHLSSWLEDARQHA---NPNMSIMLVGNKCDLAH--RRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEA  159 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~i~~~  159 (211)
                      ||++++.+|+++..|+..+....   ..+.|+++|+||.|+..  .+.+..+++..++.. .+++|+++||++|.|++++
T Consensus        78 fd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~~~  157 (175)
T d2bmja1          78 FSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRV  157 (175)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHHHH
T ss_pred             eecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCHHHH
Confidence            99999999999999998886654   35679999999888743  456777888888765 5678999999999999999


Q ss_pred             HHHHHHHHHHHHhhc
Q 028251          160 FIKTAAKILQNIQEG  174 (211)
Q Consensus       160 ~~~i~~~~~~~~~~~  174 (211)
                      |..+++.++...++.
T Consensus       158 F~~l~~~i~~~~~~~  172 (175)
T d2bmja1         158 FQEVAQKVVTLRKQQ  172 (175)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhc
Confidence            999999998877653

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.97  E-value=1.2e-30  Score=186.48  Aligned_cols=155  Identities=18%  Similarity=0.314  Sum_probs=126.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+++|+++||||||+++|..+.+.+.+.+|.+.++..  +..+  ++.+.+||+||++.+...+..++..+|++++|
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~--~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   77 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAIVYM   77 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeee--eeee--eEEEEEeeccccccccccccccccccchhhcc
Confidence            5899999999999999999999999988888887766543  3344  46789999999999999999999999999999


Q ss_pred             EECCCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEecCCCCCCCCCCHHHHHHHH-----HHcCCcEEEEeCCCCCCHHHH
Q 028251           86 YDITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFA-----KENGLLFLEASARTAQNVEEA  159 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i~~~  159 (211)
                      ||++++.++.....|+..+... ...+.|+++++||.|+.+..  ...+..+..     ...+++++++||++|.|++++
T Consensus        78 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~  155 (164)
T d1zd9a1          78 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDNIDIT  155 (164)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             cccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhh--hHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHH
Confidence            9999999999998887776543 33689999999999996533  223322221     223557999999999999999


Q ss_pred             HHHHHHH
Q 028251          160 FIKTAAK  166 (211)
Q Consensus       160 ~~~i~~~  166 (211)
                      |++|++.
T Consensus       156 ~~~l~~~  162 (164)
T d1zd9a1         156 LQWLIQH  162 (164)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHc
Confidence            9998874

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.96  E-value=1.3e-29  Score=181.11  Aligned_cols=157  Identities=21%  Similarity=0.307  Sum_probs=121.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+++|++|||||||+++|.+..+. ...++.+....  .+...  .+.+.+||+||++.+...+..++..+|++++|
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   76 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLGFNIK--TLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   76 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCCS-SCCCCSSEEEE--EEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCCC-cccceEeeeee--ecccc--ccceeeeecCcchhhhhHHHhhhhhhhcceee
Confidence            589999999999999999999987654 34445444332  23333  46789999999999999999999999999999


Q ss_pred             EECCCHHHHHHHHHHHHHHHH-hcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEeCCCCCCHHHH
Q 028251           86 YDITRRETFNHLSSWLEDARQ-HANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQNVEEA  159 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~~~  159 (211)
                      ||+++..++.....++..... ....+.|++||+||+|+.+..  ..++......     ..++.++++||++|.|++++
T Consensus        77 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~  154 (165)
T d1ksha_          77 VDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL--SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPG  154 (165)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             eecccchhHHHHHHhhhhhhhhcccCCCceEEEEecccccccc--CHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHH
Confidence            999999998887776665533 334689999999999996543  3333333221     12456899999999999999


Q ss_pred             HHHHHHHHHH
Q 028251          160 FIKTAAKILQ  169 (211)
Q Consensus       160 ~~~i~~~~~~  169 (211)
                      |++|.+.+.+
T Consensus       155 ~~~l~~~i~~  164 (165)
T d1ksha_         155 IDWLLDDISS  164 (165)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHc
Confidence            9999988754

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.96  E-value=2.1e-29  Score=181.76  Aligned_cols=157  Identities=22%  Similarity=0.319  Sum_probs=122.2

Q ss_pred             CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028251            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      .++.+||+++|++|||||||+++|.++.+.... ++.+.+  ...+...  .+.+.+||++|++.+...+..++..+|++
T Consensus        13 ~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~-~~~~~~--~~~i~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   87 (176)
T d1fzqa_          13 PDQEVRILLLGLDNAGKTTLLKQLASEDISHIT-PTQGFN--IKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDIL   87 (176)
T ss_dssp             CSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEE-EETTEE--EEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEE
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHhcCCCCcce-eeeeee--EEEeccC--CeeEeEeeccccccchhHHHHHhhcccee
Confidence            467899999999999999999999988775332 222333  2333444  46789999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHH-----HHcCCcEEEEeCCCCCCH
Q 028251           83 LLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFA-----KENGLLFLEASARTAQNV  156 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i  156 (211)
                      |+|||++++.++.....|+..+.... ..+.|++|++||+|+....  ......+..     ....+.++++||++|.|+
T Consensus        88 i~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~gv  165 (176)
T d1fzqa_          88 IYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA--PASEIAEGLNLHTIRDRVWQIQSCSALTGEGV  165 (176)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred             EEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccc--cHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCH
Confidence            99999999999999888877765433 3579999999999997533  223322221     223456999999999999


Q ss_pred             HHHHHHHHHH
Q 028251          157 EEAFIKTAAK  166 (211)
Q Consensus       157 ~~~~~~i~~~  166 (211)
                      +++|++|.+.
T Consensus       166 ~e~~~~l~~~  175 (176)
T d1fzqa_         166 QDGMNWVCKN  175 (176)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhc
Confidence            9999999874

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.96  E-value=4.5e-30  Score=186.38  Aligned_cols=162  Identities=23%  Similarity=0.330  Sum_probs=121.6

Q ss_pred             CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028251            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      ..+.+||+++|++|||||||+++|....+... .++.+....  .....  .+.+.+||+||++.+...+..++..+|++
T Consensus        14 ~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~-~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~~~i   88 (182)
T d1moza_          14 SNKELRILILGLDGAGKTTILYRLQIGEVVTT-KPTIGFNVE--TLSYK--NLKLNVWDLGGQTSIRPYWRCYYADTAAV   88 (182)
T ss_dssp             CSSCEEEEEEEETTSSHHHHHHHTCCSEEEEE-CSSTTCCEE--EEEET--TEEEEEEEEC----CCTTGGGTTTTEEEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCcc-ccccceEEE--EEeeC--CEEEEEEecccccccchhHHhhhccceeE
Confidence            45789999999999999999999987765432 234343332  22333  46789999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEecCCCCCCCCCCHHHHHHH-----HHHcCCcEEEEeCCCCCCH
Q 028251           83 LLVYDITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVSKEEGEQF-----AKENGLLFLEASARTAQNV  156 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~i  156 (211)
                      ++|||++++.++.....|+..+... ...+.|++|++||+|+.+.  ...++....     +...++.++++||++|+|+
T Consensus        89 i~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~gv  166 (182)
T d1moza_          89 IFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGI  166 (182)
T ss_dssp             EEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTH
T ss_pred             EEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccc--cCHHHHHHHHHHHHHhhCCCEEEEEECCCCCCH
Confidence            9999999999998888887665443 3367999999999999642  233443332     1224557999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 028251          157 EEAFIKTAAKILQNI  171 (211)
Q Consensus       157 ~~~~~~i~~~~~~~~  171 (211)
                      +++|++|.+.+.+++
T Consensus       167 ~e~~~~l~~~i~~~~  181 (182)
T d1moza_         167 TEGLDWLIDVIKEEQ  181 (182)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC
Confidence            999999999887653

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.96  E-value=3e-29  Score=180.58  Aligned_cols=157  Identities=19%  Similarity=0.350  Sum_probs=120.6

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      .+.+||+++|+++||||||+++|..+.+.... ++.+...    .......+.+.+||+||.+.+...+..+++.+|++|
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~-~t~~~~~----~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii   84 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNV----ETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI   84 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCCCEEEE-EETTEEE----EEEEETTEEEEEEEESCCGGGHHHHGGGTTTCCEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCCcc-ceeeeeE----EEeeccceeeEEecCCCcchhhhHHHhhhcccceEE
Confidence            35689999999999999999999977654322 2323332    223333467889999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEecCCCCCCCCCCHHHHHHH-----HHHcCCcEEEEeCCCCCCHH
Q 028251           84 LVYDITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVSKEEGEQF-----AKENGLLFLEASARTAQNVE  157 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~i~  157 (211)
                      +|||+++..++..+..|+..+... ...+.|+++++||+|+.+..  ...+....     +...++.++++||++|+|++
T Consensus        85 ~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~  162 (173)
T d1e0sa_          85 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY  162 (173)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccc--cHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHH
Confidence            999999999999998887776543 33589999999999996532  23333322     22235568999999999999


Q ss_pred             HHHHHHHHHH
Q 028251          158 EAFIKTAAKI  167 (211)
Q Consensus       158 ~~~~~i~~~~  167 (211)
                      ++|++|.+.+
T Consensus       163 e~~~~l~~~~  172 (173)
T d1e0sa_         163 EGLTWLTSNY  172 (173)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhc
Confidence            9999997653

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.94  E-value=6.3e-27  Score=165.60  Aligned_cols=153  Identities=18%  Similarity=0.272  Sum_probs=121.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+|+|++|||||||+++|.++.+...........     ...+...+.+.+||++|...+...+..++..++++++++
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   75 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV-----ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCE-----EEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeEE-----EEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEE
Confidence            689999999999999999999988766544432221     234455678899999999999999999999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHH-----HHHHHcCCcEEEEeCCCCCCHHHHH
Q 028251           87 DITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGE-----QFAKENGLLFLEASARTAQNVEEAF  160 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~~i~~~~  160 (211)
                      |..++.++..+..|+..+.... ....|+++++||.|+.+...  ..+..     .++...+++++++||++|.|++++|
T Consensus        76 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~  153 (160)
T d1r8sa_          76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  153 (160)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             EecChHHHHHHHHHHHHHHHhhcccCceEEEEeeccccccccc--HHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHH
Confidence            9999999999888877765433 36789999999999865332  22222     2233346679999999999999999


Q ss_pred             HHHHHH
Q 028251          161 IKTAAK  166 (211)
Q Consensus       161 ~~i~~~  166 (211)
                      ++|.+.
T Consensus       154 ~~l~~~  159 (160)
T d1r8sa_         154 DWLSNQ  159 (160)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            999875

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.92  E-value=1e-24  Score=156.81  Aligned_cols=157  Identities=24%  Similarity=0.326  Sum_probs=114.9

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      .+.+||+|+|.+|||||||+++|.+..+.+..... +..  .......  ...+.+||+++.+.....+..++..+++++
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~-~~~--~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i   87 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTI-GSN--VEEIVIN--NTRFLMWDIGGQESLRSSWNTYYTNTEFVI   87 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCS-CSS--CEEEEET--TEEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCcccccc-cee--EEEEeec--ceEEEEeccccccccccchhhhhccceeee
Confidence            35689999999999999999999998775433222 221  1222233  456889999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEeCCCCCCHH
Q 028251           84 LVYDITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQNVE  157 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~  157 (211)
                      +++|.++..++.....++...... ...+.|+++++||+|++...  ...+......     ..+++++++||++|+|++
T Consensus        88 ~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~  165 (177)
T d1zj6a1          88 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM--TVAEISQFLKLTSIKDHQWHIQACCALTGEGLC  165 (177)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             eecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccC--cHHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHH
Confidence            999999998887776655444332 23689999999999986543  2333333322     245679999999999999


Q ss_pred             HHHHHHHHHH
Q 028251          158 EAFIKTAAKI  167 (211)
Q Consensus       158 ~~~~~i~~~~  167 (211)
                      +++++|.+.+
T Consensus       166 e~~~~L~~~l  175 (177)
T d1zj6a1         166 QGLEWMMSRL  175 (177)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999875

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.92  E-value=1.6e-24  Score=154.24  Aligned_cols=158  Identities=23%  Similarity=0.337  Sum_probs=119.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+++|++|||||||+++|+++.+.... ++.+...  .....+  .+.+.+||.+|.+.........+...++++++
T Consensus         5 e~kI~ivG~~~vGKSSLi~~~~~~~~~~~~-~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (169)
T d1upta_           5 EMRILILGLDGAGKTTILYRLQVGEVVTTI-PTIGFNV--ETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYV   79 (169)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSSCCCCC-CCSSEEE--EEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCccee-cccceee--eeeccC--ceEEEEeeccccccccccchhhhhhhhhhhhh
Confidence            489999999999999999999999876543 3323322  223333  45678999999999999999999999999999


Q ss_pred             EECCCHHHHHHHHHHHHHH-HHhcCCCCeEEEEEecCCCCCCCCCCHHHHH----HHHHHcCCcEEEEeCCCCCCHHHHH
Q 028251           86 YDITRRETFNHLSSWLEDA-RQHANPNMSIMLVGNKCDLAHRRAVSKEEGE----QFAKENGLLFLEASARTAQNVEEAF  160 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~-~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~----~~~~~~~~~~~~~s~~~~~~i~~~~  160 (211)
                      +|+.+..++.....++... ........|+++++||.|+.+... ..+...    .++...+++++++||++|.|++++|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~  158 (169)
T d1upta_          80 VDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT-SSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAM  158 (169)
T ss_dssp             EETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-HHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHH
T ss_pred             hhhhhcchhhhccchhhhhhhhhccccceEEEEEeecccccccc-HHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHH
Confidence            9999887777766654443 333346799999999999965432 112222    2333456789999999999999999


Q ss_pred             HHHHHHHHH
Q 028251          161 IKTAAKILQ  169 (211)
Q Consensus       161 ~~i~~~~~~  169 (211)
                      ++|.+.+.+
T Consensus       159 ~~l~~~l~~  167 (169)
T d1upta_         159 EWLVETLKS  167 (169)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            999887743

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=9.5e-25  Score=159.17  Aligned_cols=156  Identities=17%  Similarity=0.210  Sum_probs=114.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+++|..|||||||+++|....+++.+     .    .+..++.....+.+||++|++.+...+..+++.++++++|
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~~~~t~~-----~----~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v   72 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKIIHEAGTG-----I----VETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFC   72 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHSCCCS-----E----EEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCcc-----E----EEEEEEeeeeeeeeeccccccccccchhhcccCCceeeeE
Confidence            589999999999999999999877654432     2    1233444456789999999999999999999999999999


Q ss_pred             EECCCHHHH-----------HHHHHHHHHHHHhcCCCCeEEEEEecCCCCCC---------------CCCCHHHHHHHHH
Q 028251           86 YDITRRETF-----------NHLSSWLEDARQHANPNMSIMLVGNKCDLAHR---------------RAVSKEEGEQFAK  139 (211)
Q Consensus        86 ~d~~~~~~~-----------~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~---------------~~~~~~~~~~~~~  139 (211)
                      +|+++..++           +....|...+......+.|+++++||.|+...               ......+......
T Consensus        73 ~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (195)
T d1svsa1          73 VALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQ  152 (195)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHH
T ss_pred             EeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHH
Confidence            999887655           23334444454444568999999999996211               1122222222111


Q ss_pred             -----H------cCCcEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 028251          140 -----E------NGLLFLEASARTAQNVEEAFIKTAAKILQN  170 (211)
Q Consensus       140 -----~------~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~  170 (211)
                           .      .++.++++||+++.||+++|+.+.+.++++
T Consensus       153 ~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~  194 (195)
T d1svsa1         153 CQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN  194 (195)
T ss_dssp             HHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhc
Confidence                 1      234577899999999999999999888765

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=8e-25  Score=160.18  Aligned_cols=161  Identities=17%  Similarity=0.141  Sum_probs=123.6

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      +.+||+++|..|||||||+++|....+.  +.||.|....    .+....+.+.+||++|++.+...+..++..++++++
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~~--~~pTiG~~~~----~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   74 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEY----PFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMF   74 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTSS--CCCCCSCEEE----EEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCCC--CCceeeEEEE----EEeccceeeeeccccccccccccccccccccceeeE
Confidence            3589999999999999999999988764  5577776553    344455778999999999999999999999999999


Q ss_pred             EEECCCHH-----------HHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCC----------------CCCCHHHHHHH
Q 028251           85 VYDITRRE-----------TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR----------------RAVSKEEGEQF  137 (211)
Q Consensus        85 v~d~~~~~-----------~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----------------~~~~~~~~~~~  137 (211)
                      ++|+++..           .++....|...+......+.|+++++||.|+.+.                ..........+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (200)
T d2bcjq2          75 LVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREF  154 (200)
T ss_dssp             EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHH
T ss_pred             eeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHH
Confidence            99998753           3455667777776666679999999999997321                11223333332


Q ss_pred             HHH----------cCCcEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 028251          138 AKE----------NGLLFLEASARTAQNVEEAFIKTAAKILQNI  171 (211)
Q Consensus       138 ~~~----------~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~  171 (211)
                      ...          ..+.++++||++|.||+++|+.|.+.++++.
T Consensus       155 i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~n  198 (200)
T d2bcjq2         155 ILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  198 (200)
T ss_dssp             HHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHHh
Confidence            221          2334789999999999999999998887654

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.91  E-value=7.6e-24  Score=152.63  Aligned_cols=156  Identities=20%  Similarity=0.128  Sum_probs=105.3

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCC-CCCeeeEEEEEEEEECCEEEEEEEEeCCCccchh--------hchHHH
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-DLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR--------SITRSY   75 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~--------~~~~~~   75 (211)
                      +.-.|+|+|.+|+|||||+|+|++....... .+..+...........+  ..+.+|||||.....        .....+
T Consensus         4 ~~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~   81 (178)
T d1wf3a1           4 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYEA   81 (178)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeee--eeeeecccccccccccccchhcccccccc
Confidence            4557999999999999999999988654322 22223233333334444  457899999964332        233455


Q ss_pred             hccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC-CcEEEEeCCCCC
Q 028251           76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG-LLFLEASARTAQ  154 (211)
Q Consensus        76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~  154 (211)
                      +..+|++|+|+|++++..... ..|...+... ..+.|+++|+||+|+....   .+....+....+ ..++++||+++.
T Consensus        82 ~~~ad~il~v~D~~~~~~~~~-~~i~~~l~~~-~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~iSA~~~~  156 (178)
T d1wf3a1          82 LADVNAVVWVVDLRHPPTPED-ELVARALKPL-VGKVPILLVGNKLDAAKYP---EEAMKAYHELLPEAEPRMLSALDER  156 (178)
T ss_dssp             TSSCSEEEEEEETTSCCCHHH-HHHHHHHGGG-TTTSCEEEEEECGGGCSSH---HHHHHHHHHTSTTSEEEECCTTCHH
T ss_pred             cccccceeeeechhhhhcccc-cchhhheecc-ccchhhhhhhcccccccCH---HHHHHHHHhhcccCceEEEecCCCC
Confidence            788999999999988644322 3344444433 3478999999999985432   223334444444 468999999999


Q ss_pred             CHHHHHHHHHHHH
Q 028251          155 NVEEAFIKTAAKI  167 (211)
Q Consensus       155 ~i~~~~~~i~~~~  167 (211)
                      |++++++.|.+.+
T Consensus       157 gi~~L~~~i~~~l  169 (178)
T d1wf3a1         157 QVAELKADLLALM  169 (178)
T ss_dssp             HHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHhC
Confidence            9999998887654

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=3e-23  Score=146.77  Aligned_cols=151  Identities=21%  Similarity=0.257  Sum_probs=116.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEE
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD   87 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   87 (211)
                      ||+++|++|||||||+|+|.++.+.. ..++.+.+.    .........+.+||++|...+...+..++..++++++++|
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~-~~~t~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   76 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTS----EELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD   76 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCC-CCCCCSCEE----EEECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCe-eeceeeEeE----EEeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeecc
Confidence            79999999999999999999988754 334434333    2333344567899999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHH------------HcCCcEEEEeCCCCC
Q 028251           88 ITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK------------ENGLLFLEASARTAQ  154 (211)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~------------~~~~~~~~~s~~~~~  154 (211)
                      ..+...+.....|+....... ..+.|+++++||.|+...  ....+......            ...+.++++||++|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~  154 (166)
T d2qtvb1          77 AADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA--VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRN  154 (166)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSC--CCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTB
T ss_pred             ccchhhhhhhhHHHHhhhhhhccCCceEEEEecccccccc--CCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCC
Confidence            999988888777766665433 378999999999998642  33444333221            123468999999999


Q ss_pred             CHHHHHHHHHH
Q 028251          155 NVEEAFIKTAA  165 (211)
Q Consensus       155 ~i~~~~~~i~~  165 (211)
                      |++++|++|.+
T Consensus       155 Gv~e~~~~l~~  165 (166)
T d2qtvb1         155 GYLEAFQWLSQ  165 (166)
T ss_dssp             SHHHHHHHHTT
T ss_pred             CHHHHHHHHhC
Confidence            99999999864

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=1e-24  Score=154.58  Aligned_cols=150  Identities=24%  Similarity=0.270  Sum_probs=106.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCC-CCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchh--------hchHHHhc
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR--------SITRSYYR   77 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~--------~~~~~~~~   77 (211)
                      +||+++|++|||||||+|+|++...... ..+..............+  ..+.+||+||.....        .....++.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   79 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEIE   79 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccC--ceeeeccccccccccccchhHHHHHHHHHHH
Confidence            7999999999999999999998775432 222222222233344555  457799999954322        22445678


Q ss_pred             cccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHH
Q 028251           78 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVE  157 (211)
Q Consensus        78 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  157 (211)
                      .+|++++++|..+..++.....|...+... ..+.|+++|+||+|+.......       ....+.+++++||+++.|++
T Consensus        80 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~iilv~NK~Dl~~~~~~~-------~~~~~~~~~~iSAk~~~gi~  151 (161)
T d2gj8a1          80 QADRVLFMVDGTTTDAVDPAEIWPEFIARL-PAKLPITVVRNKADITGETLGM-------SEVNGHALIRLSARTGEGVD  151 (161)
T ss_dssp             TCSEEEEEEETTTCCCCSHHHHCHHHHHHS-CTTCCEEEEEECHHHHCCCCEE-------EEETTEEEEECCTTTCTTHH
T ss_pred             hccccceeeccccccchhhhhhhhhhhhhc-ccccceeeccchhhhhhhHHHH-------HHhCCCcEEEEECCCCCCHH
Confidence            999999999999877666665555554443 3479999999999986533211       11235689999999999999


Q ss_pred             HHHHHHHHH
Q 028251          158 EAFIKTAAK  166 (211)
Q Consensus       158 ~~~~~i~~~  166 (211)
                      +++++|.+.
T Consensus       152 ~L~~~l~~~  160 (161)
T d2gj8a1         152 VLRNHLKQS  160 (161)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            999999875

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.90  E-value=2.3e-23  Score=150.32  Aligned_cols=158  Identities=17%  Similarity=0.038  Sum_probs=105.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccch-------hhchHHHhccc
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF-------RSITRSYYRGA   79 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~-------~~~~~~~~~~~   79 (211)
                      ..|+++|.+|||||||+|+|++...........+.+.... .........+.+|||||....       .......+..+
T Consensus         2 ~~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~   80 (180)
T d1udxa2           2 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLG-VVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIART   80 (180)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEE-EEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeec-eeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhh
Confidence            4699999999999999999997765443333333333332 223333446789999994321       12233556889


Q ss_pred             cEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHH
Q 028251           80 AGALLVYDITRRE--TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVE  157 (211)
Q Consensus        80 d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  157 (211)
                      +++++++|.....  .......|+...... ..++|+++|+||+|+.....  .+...+.....+.+++.+||++|.|++
T Consensus        81 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~NK~D~~~~~~--~~~~~~~~~~~~~~~~~iSA~tg~gid  157 (180)
T d1udxa2          81 RVLLYVLDAADEPLKTLETLRKEVGAYDPA-LLRRPSLVALNKVDLLEEEA--VKALADALAREGLAVLPVSALTGAGLP  157 (180)
T ss_dssp             SEEEEEEETTSCHHHHHHHHHHHHHHHCHH-HHHSCEEEEEECCTTSCHHH--HHHHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred             hhhhhhcccccccccchhhhhhhhhccccc-cchhhhhhhhhhhhhhhHHH--HHHHHHHHHhcCCeEEEEEcCCCCCHH
Confidence            9999999986632  233333333322111 13689999999999965332  234445555678899999999999999


Q ss_pred             HHHHHHHHHHH
Q 028251          158 EAFIKTAAKIL  168 (211)
Q Consensus       158 ~~~~~i~~~~~  168 (211)
                      ++++.|.+.+.
T Consensus       158 ~L~~~i~~~l~  168 (180)
T d1udxa2         158 ALKEALHALVR  168 (180)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99998888774

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.88  E-value=6.5e-23  Score=146.73  Aligned_cols=157  Identities=22%  Similarity=0.198  Sum_probs=98.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcc---------chhhchHHHhcc
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE---------SFRSITRSYYRG   78 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~---------~~~~~~~~~~~~   78 (211)
                      .|+|+|++|||||||+|+|++.......... +.+.......++.....+.+||++|..         .+......++..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~   80 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEE-GVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE   80 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccC-ceeeccccccccccccccccccccceeeeecccccccccccccccccc
Confidence            6999999999999999999987654322111 222222222233334557899999932         122244556788


Q ss_pred             ccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Q 028251           79 AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEE  158 (211)
Q Consensus        79 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  158 (211)
                      +|+++++++.++...... ..++..+...   +.|+++|+||+|+..+.  ..+....+.+.....++++||++|.|+++
T Consensus        81 ad~i~~~~~~~~~~~~~~-~~~~~~l~~~---~~pviiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~i~iSAk~g~gid~  154 (171)
T d1mkya1          81 ADLVLFVVDGKRGITKED-ESLADFLRKS---TVDTILVANKAENLREF--EREVKPELYSLGFGEPIPVSAEHNINLDT  154 (171)
T ss_dssp             CSEEEEEEETTTCCCHHH-HHHHHHHHHH---TCCEEEEEESCCSHHHH--HHHTHHHHGGGSSCSCEECBTTTTBSHHH
T ss_pred             CcEEEEeecccccccccc-cccccccccc---cccccccchhhhhhhhh--hhHHHHHHHhcCCCCeEEEecCCCCCHHH
Confidence            999999999877544322 3344444443   78999999999985321  11222223323344689999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028251          159 AFIKTAAKILQNI  171 (211)
Q Consensus       159 ~~~~i~~~~~~~~  171 (211)
                      ++++|.+.+.+..
T Consensus       155 L~~~i~~~l~e~~  167 (171)
T d1mkya1         155 MLETIIKKLEEKG  167 (171)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHhCCCCC
Confidence            9999988775544

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=8.7e-23  Score=149.37  Aligned_cols=159  Identities=22%  Similarity=0.263  Sum_probs=108.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+++|.+|||||||+++|.   +...+.||.|....  .+..  ....+.+||++|++.+...+..+++.+++++++
T Consensus         2 ~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~~--~~~~--~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~   74 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHEY--DFEI--KNVPFKMVDVGGQRSERKRWFECFDSVTSILFL   74 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEEE--EEEE--TTEEEEEEEECC-------CTTSCTTCCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEEE--EEee--eeeeeeeecccceeeecccccccccccceeEEE
Confidence            5899999999999999999994   44556677775543  2333  456688999999999999999999999999999


Q ss_pred             EECCCHHH----------HHHHHHHHHHH-HHhcCCCCeEEEEEecCCCCCC----------------CCCCHHHHHHHH
Q 028251           86 YDITRRET----------FNHLSSWLEDA-RQHANPNMSIMLVGNKCDLAHR----------------RAVSKEEGEQFA  138 (211)
Q Consensus        86 ~d~~~~~~----------~~~~~~~~~~~-~~~~~~~~p~ivv~nK~Dl~~~----------------~~~~~~~~~~~~  138 (211)
                      +|.++...          +.....++..+ ......+.|+++++||.|+.+.                .....+.+.++.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  154 (200)
T d1zcba2          75 VSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFL  154 (200)
T ss_dssp             EETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHH
T ss_pred             EEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHH
Confidence            99987533          23333333333 2333468999999999997321                112223333332


Q ss_pred             HH-----------cCCcEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 028251          139 KE-----------NGLLFLEASARTAQNVEEAFIKTAAKILQNI  171 (211)
Q Consensus       139 ~~-----------~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~  171 (211)
                      ..           ..+.++++||+++.+|+++|+.+.+.+.++.
T Consensus       155 ~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~~  198 (200)
T d1zcba2         155 VECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDN  198 (200)
T ss_dssp             HHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHHHh
Confidence            22           1244678999999999999999988887654

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.88  E-value=5e-22  Score=143.17  Aligned_cols=160  Identities=17%  Similarity=0.114  Sum_probs=103.2

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCe-----eeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccc
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI-----GVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGA   79 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~   79 (211)
                      +.++|+++|++++|||||+|+|++...........     +.+.......+......+.++|+||+..+.......+..+
T Consensus         4 k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~~   83 (179)
T d1wb1a4           4 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADII   83 (179)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSC
T ss_pred             CCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhhhc
Confidence            34799999999999999999999654322221111     1111111111111234578999999999999888999999


Q ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCC--HHHHHHHHHH----cCCcEEEEeCCCC
Q 028251           80 AGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS--KEEGEQFAKE----NGLLFLEASARTA  153 (211)
Q Consensus        80 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~----~~~~~~~~s~~~~  153 (211)
                      |++++|+|+.+....+.. ..+..+..   .+.|+++|+||+|+.+.....  .+..+.+...    .+.+++++||++|
T Consensus        84 d~~ilv~d~~~g~~~~~~-~~~~~~~~---~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g  159 (179)
T d1wb1a4          84 DLALIVVDAKEGPKTQTG-EHMLILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTG  159 (179)
T ss_dssp             CEEEEEEETTTCSCHHHH-HHHHHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTC
T ss_pred             cccccccccccccchhhh-hhhhhhhh---cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEccCC
Confidence            999999999885432222 22222222   378999999999986532211  1112222222    2457999999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 028251          154 QNVEEAFIKTAAKIL  168 (211)
Q Consensus       154 ~~i~~~~~~i~~~~~  168 (211)
                      .|++++++.|.+.+.
T Consensus       160 ~gi~eL~~~I~~~l~  174 (179)
T d1wb1a4         160 FGVDELKNLIITTLN  174 (179)
T ss_dssp             TTHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHhcCC
Confidence            999999988887764

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.87  E-value=1.3e-21  Score=140.93  Aligned_cols=157  Identities=22%  Similarity=0.265  Sum_probs=111.0

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      .+..||+++|++|||||||+++|.+..+.... ++.+.+.  ..+..++.  .+.+||+.+...+...+..++...++++
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~-~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV-PTLHPTS--EELTIAGM--TFTTFDLGGHIQARRVWKNYLPAINGIV   85 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETTE--EEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccee-cccccce--eEEEeccc--ccccccccchhhhhhHHhhhhcccceee
Confidence            46789999999999999999999988765433 3323332  23445553  4679999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHH-hcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-----------------cCCcE
Q 028251           84 LVYDITRRETFNHLSSWLEDARQ-HANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-----------------NGLLF  145 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~  145 (211)
                      +++|..+...+.....++..... ....+.|+++++||.|++..  ....+.......                 .++.+
T Consensus        86 ~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (186)
T d1f6ba_          86 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA--ISEERLREMFGLYGQTTGKGSVSLKELNARPLEV  163 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTC--CCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             eeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCcccc--CCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEE
Confidence            99999998887776654444333 33468999999999998642  334444433321                 13458


Q ss_pred             EEEeCCCCCCHHHHHHHHHHHH
Q 028251          146 LEASARTAQNVEEAFIKTAAKI  167 (211)
Q Consensus       146 ~~~s~~~~~~i~~~~~~i~~~~  167 (211)
                      +++||++|+|++++|++|.+.+
T Consensus       164 ~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         164 FMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             EECBTTTTBSHHHHHHHHHTTC
T ss_pred             EEEeCCCCCCHHHHHHHHHHhh
Confidence            9999999999999999998653

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.87  E-value=1.3e-22  Score=143.42  Aligned_cols=149  Identities=23%  Similarity=0.200  Sum_probs=100.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCC-CCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc--------h-hhchHHHh
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES--------F-RSITRSYY   76 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~--------~-~~~~~~~~   76 (211)
                      +||+++|.+|||||||+|+|++...... ..+..+.......+...+  ..+.+|||||...        . .......+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCC--eeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            6899999999999999999998764332 222222223333344554  4577999999321        1 11233346


Q ss_pred             ccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCH
Q 028251           77 RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNV  156 (211)
Q Consensus        77 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  156 (211)
                      ..+|++++|+|++++.......-+ ..+     ...++++++||.|+.+..  ..++.... ...+.+++++||++|.|+
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~~~~-~~~-----~~~~~i~~~~k~d~~~~~--~~~~~~~~-~~~~~~~~~vSA~~g~gi  149 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDRKIL-ERI-----KNKRYLVVINKVDVVEKI--NEEEIKNK-LGTDRHMVKISALKGEGL  149 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHHHH-HHH-----TTSSEEEEEEECSSCCCC--CHHHHHHH-HTCSTTEEEEEGGGTCCH
T ss_pred             HhCCEEEEEEeCCCCcchhhhhhh-hhc-----ccccceeeeeeccccchh--hhHHHHHH-hCCCCcEEEEECCCCCCH
Confidence            789999999999987654433222 111     267899999999997643  23333222 224568999999999999


Q ss_pred             HHHHHHHHHH
Q 028251          157 EEAFIKTAAK  166 (211)
Q Consensus       157 ~~~~~~i~~~  166 (211)
                      ++++++|.+.
T Consensus       150 ~~L~~~I~ke  159 (160)
T d1xzpa2         150 EKLEESIYRE  159 (160)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999988653

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.87  E-value=1.3e-21  Score=141.51  Aligned_cols=159  Identities=21%  Similarity=0.120  Sum_probs=105.6

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc------------hhhc
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES------------FRSI   71 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~------------~~~~   71 (211)
                      ..+||+|+|++|+|||||+|+|++..... ...+..+.......+..++..  +.++|+||...            ....
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~~~d~~g~~~~~~~~~~~~~~~~~~~   84 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK--YVFVDTAGLRRKSRVEPRTVEKYSNYR   84 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE--EEESSCSCC-----------CCSCCHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCce--eeeeccCCccccccccccccccchhHH
Confidence            46999999999999999999999876432 222222333333345556544  67889998532            2224


Q ss_pred             hHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-----cCCcEE
Q 028251           72 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-----NGLLFL  146 (211)
Q Consensus        72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~  146 (211)
                      ....+..+|++++|+|+..+.. .....+...+..   .+.|+++++||+|+.........+......+     ...+++
T Consensus        85 ~~~~~~~~dvii~v~d~~~~~~-~~~~~~~~~~~~---~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  160 (186)
T d1mkya2          85 VVDSIEKADVVVIVLDATQGIT-RQDQRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLI  160 (186)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHHhcCCEEEEeecccccch-hhHHHHHHHHHH---cCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeEE
Confidence            5556788999999999987533 222233333333   3789999999999876555444554444333     235799


Q ss_pred             EEeCCCCCCHHHHHHHHHHHHHH
Q 028251          147 EASARTAQNVEEAFIKTAAKILQ  169 (211)
Q Consensus       147 ~~s~~~~~~i~~~~~~i~~~~~~  169 (211)
                      ++||++|.|++++++.|.+.+.+
T Consensus       161 ~vSa~~g~gv~~L~~~i~~~~~~  183 (186)
T d1mkya2         161 FTSADKGWNIDRMIDAMNLAYAS  183 (186)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999776543

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.87  E-value=4.8e-22  Score=143.57  Aligned_cols=150  Identities=19%  Similarity=0.164  Sum_probs=97.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc---------------hhhch
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES---------------FRSIT   72 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~---------------~~~~~   72 (211)
                      .|+++|.+|||||||+|+|++.+......+.  .|.....+...+    +.+|||||...               +....
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g--~T~~~~~~~~~~----~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPG--VTRKIIEIEWKN----HKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTT--CTTSCEEEEETT----EEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCC--Eeeccccccccc----ceecccCCceeccccccccccccchhhhhhh
Confidence            6999999999999999999988765433332  222233333333    56899999421               11123


Q ss_pred             HHHhccccEEEEEEECCCHHHHHHHH----------HHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC
Q 028251           73 RSYYRGAAGALLVYDITRRETFNHLS----------SWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG  142 (211)
Q Consensus        73 ~~~~~~~d~~i~v~d~~~~~~~~~~~----------~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~  142 (211)
                      ...++.+|++++|+|...+.......          .+++.+.   ..+.|+++|+||+|+.+..+   +....+.....
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~---~~~~p~iiv~NK~D~~~~~~---~~~~~~~~~~~  149 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLR---ELDIPTIVAVNKLDKIKNVQ---EVINFLAEKFE  149 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHH---HTTCCEEEEEECGGGCSCHH---HHHHHHHHHHT
T ss_pred             hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHH---HcCCCEEEEEeeeehhhhHH---HHHHHHHHHhc
Confidence            34467899999999997653322211          1222222   23899999999999864322   12222222222


Q ss_pred             -------CcEEEEeCCCCCCHHHHHHHHHHHHHH
Q 028251          143 -------LLFLEASARTAQNVEEAFIKTAAKILQ  169 (211)
Q Consensus       143 -------~~~~~~s~~~~~~i~~~~~~i~~~~~~  169 (211)
                             ..++++||++|.|++++++.|.+.+.+
T Consensus       150 ~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         150 VPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             CCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             ccccccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence                   238899999999999999999888754

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.85  E-value=1.8e-21  Score=145.33  Aligned_cols=162  Identities=21%  Similarity=0.191  Sum_probs=103.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEE----------------EECCEEEEEEEEeCCCccchhhc
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMV----------------TIDGRPIKLQIWDTAGQESFRSI   71 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~l~l~D~~G~~~~~~~   71 (211)
                      .|+|+|++++|||||+++|++...........+........                .++.....+.++||||+..|...
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~   86 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTL   86 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTS
T ss_pred             EEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceeccccc
Confidence            39999999999999999998754322111111111001101                12223446789999999999888


Q ss_pred             hHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCH--------------------
Q 028251           72 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK--------------------  131 (211)
Q Consensus        72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~--------------------  131 (211)
                      ....+..+|++|+|+|+.+.-..... ..+..+..   .+.|++|++||+|+........                    
T Consensus        87 ~~~~~~~~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  162 (227)
T d1g7sa4          87 RKRGGALADLAILIVDINEGFKPQTQ-EALNILRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLD  162 (227)
T ss_dssp             BCSSSBSCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHH
T ss_pred             chhcccccceEEEEEecccCcccchh-HHHHHhhc---CCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHH
Confidence            88888999999999999875432222 22333333   3889999999999865322110                    


Q ss_pred             HHHHHHHH---H---------------cCCcEEEEeCCCCCCHHHHHHHHHHHHHHHHhh
Q 028251          132 EEGEQFAK---E---------------NGLLFLEASARTAQNVEEAFIKTAAKILQNIQE  173 (211)
Q Consensus       132 ~~~~~~~~---~---------------~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~~~  173 (211)
                      +.......   .               ..++++++||.+|.|++++++.|.....+.+++
T Consensus       163 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~~~~~  222 (227)
T d1g7sa4         163 TKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLRE  222 (227)
T ss_dssp             HHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCSG
T ss_pred             HHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            00000001   0               013589999999999999999888776555543

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=1.1e-19  Score=133.64  Aligned_cols=117  Identities=19%  Similarity=0.278  Sum_probs=86.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchh-hchHHHhccccEEEEEE
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR-SITRSYYRGAAGALLVY   86 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~-~~~~~~~~~~d~~i~v~   86 (211)
                      +|+|+|++|||||||+++|+++.+.... ++.+.+.....+ .+...+.+.+||++|++.+. ..+..++..++++++|+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~-~t~~~~~~~~~~-~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~   79 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKV-NNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVV   79 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSCEEEEEEC-SSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCccc-CCeeEEEEEEEE-eeeeeeeeeeeeccccccccchhhhhhhhhccccceEE
Confidence            6999999999999999999998876654 444555443322 24456678999999998875 46778889999999999


Q ss_pred             ECCCHHHH-HHHHHHHHHH-HH--hcCCCCeEEEEEecCCCCCC
Q 028251           87 DITRRETF-NHLSSWLEDA-RQ--HANPNMSIMLVGNKCDLAHR  126 (211)
Q Consensus        87 d~~~~~~~-~~~~~~~~~~-~~--~~~~~~p~ivv~nK~Dl~~~  126 (211)
                      |+++...+ .....++..+ ..  ....+.|++|++||+|++..
T Consensus        80 D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a  123 (207)
T d2fh5b1          80 DSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA  123 (207)
T ss_dssp             ETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred             EcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCC
Confidence            99997653 3444444333 22  22346899999999999753

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.84  E-value=1.1e-21  Score=145.87  Aligned_cols=161  Identities=17%  Similarity=0.182  Sum_probs=113.9

Q ss_pred             CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028251            3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      |.+..||+++|+.|||||||+++|....+    .||.|...  ..+.+++  +.+.+||++|++.++..|..++..++++
T Consensus         3 ~k~~~KilllG~~~vGKTsll~~~~~~~~----~pTiG~~~--~~~~~~~--~~~~~~D~~Gq~~~r~~w~~~~~~~~~i   74 (221)
T d1azta2           3 YRATHRLLLLGAGESGKSTIVKQMRILHV----VLTSGIFE--TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAI   74 (221)
T ss_dssp             HHHSEEEEEECSTTSSHHHHHHHHHHHHC----CCCCSCEE--EEEEETT--EEEEEEECCCSTTTTTGGGGGCTTCSEE
T ss_pred             chhcCEEEEECCCCCCHHHHHHHHhcCCc----CCCCCeEE--EEEEECc--EEEEEEecCccceeccchhhhcccccce
Confidence            56789999999999999999999986544    35556443  3344554  6688999999999999999999999999


Q ss_pred             EEEEECCCHHH-----------HHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCC----C------------------
Q 028251           83 LLVYDITRRET-----------FNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA----V------------------  129 (211)
Q Consensus        83 i~v~d~~~~~~-----------~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----~------------------  129 (211)
                      ++|+|+++...           .+....|...+......+.|++|++||+|+.+.+.    .                  
T Consensus        75 i~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~  154 (221)
T d1azta2          75 IFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDA  154 (221)
T ss_dssp             EEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTC
T ss_pred             EEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccc
Confidence            99999876432           12223333333333336899999999999832110    0                  


Q ss_pred             --------CHHHHHHHH-----HHc--------CCcEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 028251          130 --------SKEEGEQFA-----KEN--------GLLFLEASARTAQNVEEAFIKTAAKILQNI  171 (211)
Q Consensus       130 --------~~~~~~~~~-----~~~--------~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~  171 (211)
                              ...++..+.     +..        .+..+++||.++.+|+.+|+.+.+.++++.
T Consensus       155 ~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~~  217 (221)
T d1azta2         155 TPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMH  217 (221)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             cccCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHHHH
Confidence                    122222222     111        123568999999999999999888887654

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.83  E-value=3.9e-21  Score=139.02  Aligned_cols=156  Identities=17%  Similarity=0.119  Sum_probs=99.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchh----hc---hHHHhccc
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR----SI---TRSYYRGA   79 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~----~~---~~~~~~~~   79 (211)
                      .+|+|+|++|||||||+|+|++........+..+.+.......+.+ ...+.+|||||.....    ..   ....+..+
T Consensus         2 ~~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~   80 (185)
T d1lnza2           2 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT   80 (185)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecC-CcEEEEecCCCcccCchHHHHHHHHHHHHHHHh
Confidence            4799999999999999999998775444344334443333343332 2346799999953211    11   22334568


Q ss_pred             cEEEEEEECCCHHHHHHH--HHHH---HHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH--cCCcEEEEeCCC
Q 028251           80 AGALLVYDITRRETFNHL--SSWL---EDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE--NGLLFLEASART  152 (211)
Q Consensus        80 d~~i~v~d~~~~~~~~~~--~~~~---~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~  152 (211)
                      +.++++++..........  ..+.   .........++|+++++||+|+.+..    +..+.+...  .+.+++.+||++
T Consensus        81 ~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~----~~~~~~~~~~~~~~~v~~iSA~~  156 (185)
T d1lnza2          81 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVT  156 (185)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCC
T ss_pred             hhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHH----HHHHHHHHHhccCCcEEEEECCC
Confidence            888888876543221111  1111   11111222578999999999996532    233334433  367899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 028251          153 AQNVEEAFIKTAAKI  167 (211)
Q Consensus       153 ~~~i~~~~~~i~~~~  167 (211)
                      |.|++++++.|.+.+
T Consensus       157 g~Gi~~L~~~i~~~L  171 (185)
T d1lnza2         157 REGLRELLFEVANQL  171 (185)
T ss_dssp             SSTTHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhh
Confidence            999999999888776

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.83  E-value=8.7e-20  Score=132.91  Aligned_cols=155  Identities=13%  Similarity=0.129  Sum_probs=92.4

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc----------hhh---c
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES----------FRS---I   71 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~----------~~~---~   71 (211)
                      ...+|+|+|++|||||||+|+|++...........+.+..........   .+.+.|+++...          ...   .
T Consensus        22 ~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~~   98 (195)
T d1svia_          22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIET   98 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccc---cceEEEEEeeccccccccccchhhhHHhh
Confidence            445899999999999999999998654322222223333333333332   233566665221          111   1


Q ss_pred             hHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH----cCCcEEE
Q 028251           72 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE----NGLLFLE  147 (211)
Q Consensus        72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~  147 (211)
                      ....+..+|++++|+|+.++... ....+++.+...   +.|+++|+||+|+.+..... +........    ...+++.
T Consensus        99 ~~~~~~~~~~vi~viD~~~~~~~-~~~~~~~~l~~~---~~piivv~NK~D~~~~~~~~-~~~~~~~~~l~~~~~~~~~~  173 (195)
T d1svia_          99 YITTREELKAVVQIVDLRHAPSN-DDVQMYEFLKYY---GIPVIVIATKADKIPKGKWD-KHAKVVRQTLNIDPEDELIL  173 (195)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHHHT---TCCEEEEEECGGGSCGGGHH-HHHHHHHHHHTCCTTSEEEE
T ss_pred             hhccccchhhhhhhhhccccccc-cccccccccccc---cCcceechhhccccCHHHHH-HHHHHHHHHhcccCCCCEEE
Confidence            22334567899999999875332 222344444443   78999999999986543321 222222222    3457999


Q ss_pred             EeCCCCCCHHHHHHHHHHHH
Q 028251          148 ASARTAQNVEEAFIKTAAKI  167 (211)
Q Consensus       148 ~s~~~~~~i~~~~~~i~~~~  167 (211)
                      +||++|.|+++++++|.+.+
T Consensus       174 ~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         174 FSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             CCTTTCTTHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHh
Confidence            99999999999999998876

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.81  E-value=5.2e-20  Score=134.18  Aligned_cols=162  Identities=15%  Similarity=0.147  Sum_probs=104.9

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCC---C--CeeeEEEEEEEE-------------------ECCEEEEEEE
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD---L--TIGVEFGARMVT-------------------IDGRPIKLQI   59 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~---~--~~~~~~~~~~~~-------------------~~~~~~~l~l   59 (211)
                      ...++|+++|+.++|||||+++|++........   .  +....+......                   .......+.+
T Consensus         3 ~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (195)
T d1kk1a3           3 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF   82 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred             CCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEee
Confidence            456899999999999999999998643221110   0  000111110010                   1123456889


Q ss_pred             EeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC--CHHHHHHH
Q 028251           60 WDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--SKEEGEQF  137 (211)
Q Consensus        60 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~  137 (211)
                      +|+||+..|.......+..+|++++|+|+.+..........+..+....  ..++++++||+|+.+....  ..+....+
T Consensus        83 iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~--~~~iiv~inK~D~~d~~~~~~~~~~~~~~  160 (195)
T d1kk1a3          83 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG--QKNIIIAQNKIELVDKEKALENYRQIKEF  160 (195)
T ss_dssp             EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred             eccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhc--CccceeeeecccchhhHHHHHHHHHHHHH
Confidence            9999999999988888999999999999988532233333333334332  3458888999998653221  11222333


Q ss_pred             HHHc---CCcEEEEeCCCCCCHHHHHHHHHHHH
Q 028251          138 AKEN---GLLFLEASARTAQNVEEAFIKTAAKI  167 (211)
Q Consensus       138 ~~~~---~~~~~~~s~~~~~~i~~~~~~i~~~~  167 (211)
                      ....   .++++++||++|+|++++++.|.+.+
T Consensus       161 ~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         161 IEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             hccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            3332   35799999999999999888876643

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.80  E-value=9e-19  Score=128.50  Aligned_cols=160  Identities=17%  Similarity=0.124  Sum_probs=101.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCC-----C--eeeEEEEEEEE----------------------ECCEEEE
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-----T--IGVEFGARMVT----------------------IDGRPIK   56 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~-----~--~~~~~~~~~~~----------------------~~~~~~~   56 (211)
                      .++|+++|+.++|||||+++|++.........     .  .+.........                      .......
T Consensus         8 ~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~   87 (205)
T d2qn6a3           8 EVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRR   87 (205)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEE
T ss_pred             CeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccceEE
Confidence            37999999999999999999986332111000     0  01000000000                      0112346


Q ss_pred             EEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCC--HHHH
Q 028251           57 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS--KEEG  134 (211)
Q Consensus        57 l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~  134 (211)
                      +.+.|+||+..|.......+..+|++|+|+|+.+.-.....+..+.......  ..|++|++||+|+.+.....  ..+.
T Consensus        88 ~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~--i~~iIV~vNK~Dl~~~~~~~~~~~~~  165 (205)
T d2qn6a3          88 ISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQI  165 (205)
T ss_dssp             EEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTT--CCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred             EEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHcC--CceeeeccccCCCccchHHHHHHHHH
Confidence            8899999999999988888999999999999988532222233333333332  35889999999996533211  1112


Q ss_pred             HHHHHH---cCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 028251          135 EQFAKE---NGLLFLEASARTAQNVEEAFIKTAAKI  167 (211)
Q Consensus       135 ~~~~~~---~~~~~~~~s~~~~~~i~~~~~~i~~~~  167 (211)
                      ..+...   .+++++++||++|.|++++++.|.+.+
T Consensus       166 ~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~i  201 (205)
T d2qn6a3         166 KQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI  201 (205)
T ss_dssp             HHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhC
Confidence            222222   246799999999999999998877654

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.78  E-value=1.4e-19  Score=131.66  Aligned_cols=157  Identities=18%  Similarity=0.133  Sum_probs=106.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhC-----CC---------CCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhc
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDK-----RF---------QPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI   71 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~-----~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~   71 (211)
                      .++|+++|+.++|||||+++|+..     ..         ........|.++......++.....+.++|+||+..|...
T Consensus         3 ~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~~   82 (196)
T d1d2ea3           3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN   82 (196)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHHH
Confidence            489999999999999999999741     00         0011122245555555666666677899999999999998


Q ss_pred             hHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCC---HHHHHHHHHHcC-----C
Q 028251           72 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS---KEEGEQFAKENG-----L  143 (211)
Q Consensus        72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~-----~  143 (211)
                      ....+..+|++|+|+|+.+... .+....+..+....  ..|+||++||+|+.++.+..   ..+...+....+     +
T Consensus        83 ~~~~~~~aD~allVVda~~G~~-~QT~~~~~~a~~~~--~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~  159 (196)
T d1d2ea3          83 MITGTAPLDGCILVVAANDGPM-PQTREHLLLARQIG--VEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEET  159 (196)
T ss_dssp             HHHTSSCCSEEEEEEETTTCSC-HHHHHHHHHHHHTT--CCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTS
T ss_pred             HHHHHhhcCeEEEEEEcCCCCc-hhHHHHHHHHHHhc--CCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCcccC
Confidence            8888999999999999998543 22233334444432  46799999999986532211   113334444333     5


Q ss_pred             cEEEEeCCCC----------CCHHHHHHHHHH
Q 028251          144 LFLEASARTA----------QNVEEAFIKTAA  165 (211)
Q Consensus       144 ~~~~~s~~~~----------~~i~~~~~~i~~  165 (211)
                      +++++|+++|          .++.++++.|.+
T Consensus       160 pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~  191 (196)
T d1d2ea3         160 PIIVGSALCALEQRDPELGLKSVQKLLDAVDT  191 (196)
T ss_dssp             CEEECCHHHHHTTCCTTTTHHHHHHHHHHHHH
T ss_pred             EEEEEEccccccccCcccccCCHHHHHHHHHh
Confidence            6999999987          366666655543

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=3.4e-18  Score=122.47  Aligned_cols=157  Identities=20%  Similarity=0.114  Sum_probs=97.3

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEE-EEECCEEEEEEEEeCCCccchhh---------chH
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM-VTIDGRPIKLQIWDTAGQESFRS---------ITR   73 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~l~D~~G~~~~~~---------~~~   73 (211)
                      .|--.|+|+|.+|||||||+|+|++.+.........+.+..... ...+..  .+..||++|......         ...
T Consensus         3 ~~~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (179)
T d1egaa1           3 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAY--QAIYVDTPGLHMEEKRAINRLMNKAAS   80 (179)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTE--EEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred             ccccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCc--eeEeecCCCceecchhhhhhhhhhccc
Confidence            35567999999999999999999987654333332222222222 233433  355688887432211         222


Q ss_pred             HHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC-CcEEEEeCCC
Q 028251           74 SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG-LLFLEASART  152 (211)
Q Consensus        74 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~  152 (211)
                      .....+++++++.|..+....  ...+...+.   ....|.++++||.|...................+ .+++++||++
T Consensus        81 ~~~~~~~~~l~~~d~~~~~~~--~~~~~~~l~---~~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~  155 (179)
T d1egaa1          81 SSIGDVELVIFVVEGTRWTPD--DEMVLNKLR---EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAET  155 (179)
T ss_dssp             SCCCCEEEEEEEEETTCCCHH--HHHHHHHHH---SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred             cchhhcceeEEEEecCccchh--HHHHHHHhh---hccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcC
Confidence            233567788888887764321  122222222   2367899999999986543222233344444444 5799999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 028251          153 AQNVEEAFIKTAAKI  167 (211)
Q Consensus       153 ~~~i~~~~~~i~~~~  167 (211)
                      |.|++++++.|.+.+
T Consensus       156 g~gi~~L~~~i~~~l  170 (179)
T d1egaa1         156 GLNVDTIAAIVRKHL  170 (179)
T ss_dssp             TTTHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHhC
Confidence            999999988887654

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.74  E-value=1.7e-18  Score=126.75  Aligned_cols=142  Identities=18%  Similarity=0.144  Sum_probs=92.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCC------CCCC----C-----CCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRF------QPVH----D-----LTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS   70 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~------~~~~----~-----~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~   70 (211)
                      .++|+++|+.++|||||+++|+....      ....    .     ...|.+.....+.+...+.++.|+||||+..|..
T Consensus         3 ~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~~   82 (204)
T d2c78a3           3 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIK   82 (204)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGHH
T ss_pred             CeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhHH
Confidence            48999999999999999999973210      0000    0     0013344334444444556788999999999999


Q ss_pred             chHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEecCCCCCCCCCC---HHHHHHHHHHcC----
Q 028251           71 ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAVS---KEEGEQFAKENG----  142 (211)
Q Consensus        71 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~----  142 (211)
                      .....+..+|++|+|+|+.+....+.. ..+......   +.| ++|++||+|+.+..+..   .++...+....+    
T Consensus        83 ~~~~~~~~aD~avlVvda~~Gv~~qt~-~~~~~~~~~---gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~  158 (204)
T d2c78a3          83 NMITGAAQMDGAILVVSAADGPMPQTR-EHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGD  158 (204)
T ss_dssp             HHHHHHTTCSSEEEEEETTTCCCHHHH-HHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHHHHHHCCEEEEEEECCCCCcHHHH-HHHHHHHHc---CCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCCCcc
Confidence            999999999999999999886544333 333333333   665 77889999986532110   122333333332    


Q ss_pred             -CcEEEEeCC
Q 028251          143 -LLFLEASAR  151 (211)
Q Consensus       143 -~~~~~~s~~  151 (211)
                       ++++..|+.
T Consensus       159 ~i~~i~~sa~  168 (204)
T d2c78a3         159 EVPVIRGSAL  168 (204)
T ss_dssp             TSCEEECCHH
T ss_pred             cceeeeeech
Confidence             457888775

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=4.2e-18  Score=124.90  Aligned_cols=116  Identities=20%  Similarity=0.253  Sum_probs=80.7

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHH----hcccc
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSY----YRGAA   80 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~----~~~~d   80 (211)
                      |.++|+|+|++|||||||+|+|+++.+.+..    +.....  ..++.....+.+||+||++.+...+..+    ....+
T Consensus         2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~~~t----t~~~~~--~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~   75 (209)
T d1nrjb_           2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV----VSQEPL--SAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVK   75 (209)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSCCCBC----CCSSCE--EETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCeE----EecceE--EEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhcc
Confidence            5679999999999999999999998765321    222222  2334444567899999998766655444    34557


Q ss_pred             EEEEEEECCC-HHHHHHHHHHH----HHHHHhcCCCCeEEEEEecCCCCCC
Q 028251           81 GALLVYDITR-RETFNHLSSWL----EDARQHANPNMSIMLVGNKCDLAHR  126 (211)
Q Consensus        81 ~~i~v~d~~~-~~~~~~~~~~~----~~~~~~~~~~~p~ivv~nK~Dl~~~  126 (211)
                      .+++++|+.+ ..++.....|+    ..+......+.|+++++||+|+...
T Consensus        76 ~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~  126 (209)
T d1nrjb_          76 GLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA  126 (209)
T ss_dssp             EEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             ccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeccccc
Confidence            8888998765 44444444443    4444555578999999999999654

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.72  E-value=5.3e-17  Score=119.96  Aligned_cols=151  Identities=19%  Similarity=0.151  Sum_probs=97.5

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCC--CC-----------------------------CCCCeeeEEEEEEEEECC
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQ--PV-----------------------------HDLTIGVEFGARMVTIDG   52 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~   52 (211)
                      ...++|+++|+.++|||||+.+|+.....  ..                             .....+.+.......+..
T Consensus         7 ~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~   86 (222)
T d1zunb3           7 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST   86 (222)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEec
Confidence            46789999999999999999999742111  00                             000112222222233333


Q ss_pred             EEEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC-CeEEEEEecCCCCCCCCCCH
Q 028251           53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPN-MSIMLVGNKCDLAHRRAVSK  131 (211)
Q Consensus        53 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~p~ivv~nK~Dl~~~~~~~~  131 (211)
                      ....+.++|+||+..|-.....-+..+|++|+|+|+.+...-+. ...+......   + ..+++++||+|+.+..+...
T Consensus        87 ~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt-~e~~~~~~~~---gv~~iiv~vNK~D~~~~~~~~~  162 (222)
T d1zunb3          87 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT-RRHSYIASLL---GIKHIVVAINKMDLNGFDERVF  162 (222)
T ss_dssp             SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH-HHHHHHHHHT---TCCEEEEEEECTTTTTSCHHHH
T ss_pred             cceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccch-HHHHHHHHHc---CCCEEEEEEEccccccccceeh
Confidence            44568899999999999999999999999999999988533222 2222222222   5 44788999999976443222


Q ss_pred             H----HHHHHHHHcCC-----cEEEEeCCCCCCHHH
Q 028251          132 E----EGEQFAKENGL-----LFLEASARTAQNVEE  158 (211)
Q Consensus       132 ~----~~~~~~~~~~~-----~~~~~s~~~~~~i~~  158 (211)
                      +    +...+....++     +++++||++|+|+.+
T Consensus       163 ~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~~  198 (222)
T d1zunb3         163 ESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN  198 (222)
T ss_dssp             HHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred             hhhHHHHhhhhHhhccCCCceEEEEEEcccCccCCc
Confidence            2    23344444433     579999999998843

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.71  E-value=8.1e-17  Score=122.05  Aligned_cols=116  Identities=18%  Similarity=0.186  Sum_probs=80.8

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCC----------------CCCeeeEEEEEEEEECCEEEEEEEEeCCCccch
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH----------------DLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF   68 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~   68 (211)
                      +.-+|+++|+.++|||||+.+|+........                ....+.++......+.....+++|+||||+..|
T Consensus         5 ~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF   84 (276)
T d2bv3a2           5 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDF   84 (276)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSC
T ss_pred             hceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhh
Confidence            3347999999999999999999632111000                001122222222333334456889999999999


Q ss_pred             hhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCC
Q 028251           69 RSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA  124 (211)
Q Consensus        69 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  124 (211)
                      .......+..+|++|+|+|+.+.-......-| .....   .+.|.++++||+|..
T Consensus        85 ~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w-~~a~~---~~lP~i~fINKmDr~  136 (276)
T d2bv3a2          85 TIEVERSMRVLDGAIVVFDSSQGVEPQSETVW-RQAEK---YKVPRIAFANKMDKT  136 (276)
T ss_dssp             STTHHHHHHHCCEEEEEEETTTSSCHHHHHHH-HHHHT---TTCCEEEEEECTTST
T ss_pred             HHHHHHHHHhhhheEEeccccCCcchhHHHHH-HHHHH---cCCCEEEEEeccccc
Confidence            99999999999999999999987554444444 33333   489999999999974

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.69  E-value=3e-16  Score=118.60  Aligned_cols=111  Identities=20%  Similarity=0.227  Sum_probs=79.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCCCCCC------------------CCCeeeEEEEEEEEECCEEEEEEEEeCCCccchh
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVH------------------DLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR   69 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~   69 (211)
                      +|+|+|+.++|||||+.+|+........                  ....+.......+..++  .+++++||||+..|.
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~--~~~n~iDtPGh~dF~   81 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPGYGDFV   81 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCCSGGGH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccc--cceeEEccCchhhhh
Confidence            6999999999999999999643211110                  01112223333344444  467899999999999


Q ss_pred             hchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCC
Q 028251           70 SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA  124 (211)
Q Consensus        70 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  124 (211)
                      ......+..+|++|+|+|+.+.........| ......   +.|.++++||+|..
T Consensus        82 ~e~~~al~~~D~avlvvda~~Gv~~~t~~~~-~~~~~~---~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          82 GEIRGALEAADAALVAVSAEAGVQVGTERAW-TVAERL---GLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHHT---TCCEEEEEECGGGC
T ss_pred             hhhhhhhcccCceEEEeeccCCccchhHHHH-Hhhhhc---cccccccccccccc
Confidence            9999999999999999999986554444444 333332   89999999999964

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=8e-17  Score=115.69  Aligned_cols=162  Identities=14%  Similarity=0.045  Sum_probs=84.0

Q ss_pred             CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchh-------hchH-
Q 028251            2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR-------SITR-   73 (211)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~-------~~~~-   73 (211)
                      +.+..++|+++|.+|||||||+|+|++.+.........+................+..++.++.....       .... 
T Consensus        12 p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (188)
T d1puia_          12 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGE   91 (188)
T ss_dssp             SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHH
T ss_pred             CCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhhhhh
Confidence            46788999999999999999999999876544433332222222222222222222222322211111       1111 


Q ss_pred             --HHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCC--HHHHHHHHHHc--CCcEEE
Q 028251           74 --SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS--KEEGEQFAKEN--GLLFLE  147 (211)
Q Consensus        74 --~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~--~~~~~~  147 (211)
                        ......+.++.+.+......... ..++..+..   ...++++++||+|+.+.....  .+...+.....  ..++++
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~i~  167 (188)
T d1puia_          92 YLEKRQSLQGLVVLMDIRHPLKDLD-QQMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVET  167 (188)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEE
T ss_pred             hhhhhhheeEEEEeecccccchhHH-HHHHHHhhh---ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcEEE
Confidence              11233445666666655432222 223333333   378899999999986532211  11122222222  346899


Q ss_pred             EeCCCCCCHHHHHHHHHHHH
Q 028251          148 ASARTAQNVEEAFIKTAAKI  167 (211)
Q Consensus       148 ~s~~~~~~i~~~~~~i~~~~  167 (211)
                      +||++|.|++++++.|.+.+
T Consensus       168 vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         168 FSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             CBTTTTBSHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHh
Confidence            99999999999998887654

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.60  E-value=6.8e-16  Score=115.16  Aligned_cols=150  Identities=17%  Similarity=0.149  Sum_probs=97.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCC--CC---------------CC------------CCCeeeEEEEEEEEECCEEEE
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRF--QP---------------VH------------DLTIGVEFGARMVTIDGRPIK   56 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~--~~---------------~~------------~~~~~~~~~~~~~~~~~~~~~   56 (211)
                      .++|+++|+.++|||||+.+|+...-  .+               ..            ....|.++......+...+.+
T Consensus         6 ~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~   85 (239)
T d1f60a3           6 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQ   85 (239)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEE
T ss_pred             ccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCCEE
Confidence            58999999999999999999963211  00               00            001133333333444444567


Q ss_pred             EEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHH------HHHHHHHHHHHHhcCCCCe-EEEEEecCCCCCCCCC
Q 028251           57 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF------NHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAV  129 (211)
Q Consensus        57 l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~------~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~  129 (211)
                      +.|.|+||+..|......-+..+|++|+|+|+.+..--      .+....+......   ++| +||++||+|+.+....
T Consensus        86 i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~---gv~~iiv~iNKmD~~~~d~~  162 (239)
T d1f60a3          86 VTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL---GVRQLIVAVNKMDSVKWDES  162 (239)
T ss_dssp             EEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT---TCCEEEEEEECGGGGTTCHH
T ss_pred             EEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHc---CCCeEEEEEECCCCCCCCHH
Confidence            89999999999999999999999999999999864210      1122222222322   554 7889999998654322


Q ss_pred             CH----HHHHHHHHHcC-----CcEEEEeCCCCCCHHH
Q 028251          130 SK----EEGEQFAKENG-----LLFLEASARTAQNVEE  158 (211)
Q Consensus       130 ~~----~~~~~~~~~~~-----~~~~~~s~~~~~~i~~  158 (211)
                      ..    ++...+....+     ++++++|+..|.|+.+
T Consensus       163 ~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         163 RFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             HHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             HHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            11    23334444433     4589999999988654

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.59  E-value=1.7e-15  Score=113.54  Aligned_cols=154  Identities=18%  Similarity=0.128  Sum_probs=83.1

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCC-----------------------------CCCCCeeeEEEEEEEEECCEEE
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-----------------------------VHDLTIGVEFGARMVTIDGRPI   55 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~   55 (211)
                      ..++|+++|+.++|||||+.+|+...-..                             ......+.+.......+.....
T Consensus        23 ~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~  102 (245)
T d1r5ba3          23 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHR  102 (245)
T ss_dssp             EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSE
T ss_pred             CceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccccccccc
Confidence            46789999999999999999995321100                             0000112222222222333345


Q ss_pred             EEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHH------HHHHHHHHHHHhcCCCC-eEEEEEecCCCCCCCC
Q 028251           56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFN------HLSSWLEDARQHANPNM-SIMLVGNKCDLAHRRA  128 (211)
Q Consensus        56 ~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~------~~~~~~~~~~~~~~~~~-p~ivv~nK~Dl~~~~~  128 (211)
                      .+.+.|+||+..|..........+|++|+|+|+.+..--.      +....+......   +. ++++++||+|+.....
T Consensus       103 ~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~---~i~~iiv~iNKmD~~~~~~  179 (245)
T d1r5ba3         103 RFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ---GINHLVVVINKMDEPSVQW  179 (245)
T ss_dssp             EEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT---TCSSEEEEEECTTSTTCSS
T ss_pred             eeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHc---CCCeEEEEEEcCCCCccch
Confidence            6889999999999999999999999999999998742110      122222222222   44 4789999999864221


Q ss_pred             --CCHHH----HHHHHHHc-------CCcEEEEeCCCCCCHHHHHH
Q 028251          129 --VSKEE----GEQFAKEN-------GLLFLEASARTAQNVEEAFI  161 (211)
Q Consensus       129 --~~~~~----~~~~~~~~-------~~~~~~~s~~~~~~i~~~~~  161 (211)
                        ...++    ...+....       .++++++||++|+|+.++++
T Consensus       180 ~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~  225 (245)
T d1r5ba3         180 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  225 (245)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             hHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence              11111    22222221       24699999999999977543

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.58  E-value=9e-16  Score=113.72  Aligned_cols=151  Identities=19%  Similarity=0.204  Sum_probs=92.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCC-----------------------------CCCCCeeeEEEEEEEEECCEEEE
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQP-----------------------------VHDLTIGVEFGARMVTIDGRPIK   56 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~   56 (211)
                      .++|+++|+.++|||||+.+|+......                             ......+.+.......++.....
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~   82 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYF   82 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCE
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCce
Confidence            5799999999999999999986321000                             00011133333333444455567


Q ss_pred             EEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHH------HHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCC--
Q 028251           57 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF------NHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA--  128 (211)
Q Consensus        57 l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~------~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--  128 (211)
                      +.|.||||+..|.......+..+|++|+|+|+.+...-      .+....+......  ...++|+++||+|+.....  
T Consensus        83 i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~--~~~~iIv~iNK~D~~~~~~~~  160 (224)
T d1jnya3          83 FTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM--GLDQLIVAVNKMDLTEPPYDE  160 (224)
T ss_dssp             EEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT--TCTTCEEEEECGGGSSSTTCH
T ss_pred             eEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHh--CCCceEEEEEcccCCCccccH
Confidence            89999999999999999999999999999999985321      1122222222222  1456888999999864221  


Q ss_pred             CCHHH----HHHHHHHc-----CCcEEEEeCCCCCCHHH
Q 028251          129 VSKEE----GEQFAKEN-----GLLFLEASARTAQNVEE  158 (211)
Q Consensus       129 ~~~~~----~~~~~~~~-----~~~~~~~s~~~~~~i~~  158 (211)
                      ...++    ...+....     .++++++||..|.|+.+
T Consensus       161 ~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         161 KRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             HHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            11111    22233332     34589999999998754

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=4.1e-14  Score=113.11  Aligned_cols=158  Identities=13%  Similarity=0.124  Sum_probs=90.2

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCC---eeeEEEEEEEEECCEEEEEEEEeCCCccchhhc-----hHHHh
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT---IGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI-----TRSYY   76 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~-----~~~~~   76 (211)
                      ..++|+|+|.+|+|||||+|+|++..........   .+.+.....+...+ .-.+.+|||||.......     ....+
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~-~~~~~l~DtPG~~~~~~~~~~~~~~~~~  133 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPN-IPNVVFWDLPGIGSTNFPPDTYLEKMKF  133 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSS-CTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccC-CCeEEEEeCCCcccccccHHHHHHHhhh
Confidence            3689999999999999999999986543322211   12222222233222 123679999996543322     22235


Q ss_pred             ccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCC-------CCCCCCHH----HHHH----HHHHc
Q 028251           77 RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA-------HRRAVSKE----EGEQ----FAKEN  141 (211)
Q Consensus        77 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~-------~~~~~~~~----~~~~----~~~~~  141 (211)
                      ..+|++|++.|..-...   ...++..+...   ++|+++|.||+|..       .......+    +.+.    .....
T Consensus       134 ~~~d~~l~~~~~~~~~~---d~~l~~~l~~~---~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~  207 (400)
T d1tq4a_         134 YEYDFFIIISATRFKKN---DIDIAKAISMM---KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN  207 (400)
T ss_dssp             GGCSEEEEEESSCCCHH---HHHHHHHHHHT---TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred             hcceEEEEecCCCCCHH---HHHHHHHHHHc---CCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHHc
Confidence            67888888877543222   12333344433   79999999999962       11111222    2221    12222


Q ss_pred             CC---cEEEEeCCC--CCCHHHHHHHHHHHHHH
Q 028251          142 GL---LFLEASART--AQNVEEAFIKTAAKILQ  169 (211)
Q Consensus       142 ~~---~~~~~s~~~--~~~i~~~~~~i~~~~~~  169 (211)
                      ++   +++.+|..+  ..++.++.+.+.+.+.+
T Consensus       208 ~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~  240 (400)
T d1tq4a_         208 GIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI  240 (400)
T ss_dssp             TCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred             CCCCCCEEEecCCcccccCHHHHHHHHHHHhHH
Confidence            33   478888765  34778877777666543

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.53  E-value=3.9e-14  Score=106.82  Aligned_cols=126  Identities=15%  Similarity=0.083  Sum_probs=77.6

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCC-CCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh-------chHH--
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS-------ITRS--   74 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~-------~~~~--   74 (211)
                      ..++|+|+|.+|+|||||+|.|++........ +..+..........++.  .+.++||||......       ....  
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~--~i~viDTPGl~~~~~~~~~~~~~i~~~~  108 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGF--TLNIIDTPGLIEGGYINDMALNIIKSFL  108 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTE--EEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccE--EEEEEeeecccCCcchHHHHHHHHHHHH
Confidence            56899999999999999999999987654332 23333334444556664  578999999543221       1111  


Q ss_pred             HhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEecCCCCCCCCCCHH
Q 028251           75 YYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKE  132 (211)
Q Consensus        75 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~  132 (211)
                      .....|+++||++++...--......+..+.....  .-.+++||+||+|...+.....+
T Consensus       109 ~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~~~~e  168 (257)
T d1h65a_         109 LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYD  168 (257)
T ss_dssp             TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHH
T ss_pred             hcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCCcCCCcHH
Confidence            12456789999988653211111223333333322  13578999999998765444443

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.51  E-value=2.6e-14  Score=111.33  Aligned_cols=118  Identities=19%  Similarity=0.197  Sum_probs=81.1

Q ss_pred             CCCcee-eEEEEcCCCCCHHHHHHHHHhCC--CC--------------CCCCCCeeeEEEEEEEEE--------------
Q 028251            2 SYDYLF-KYIIIGDTGVGKSCLLLQFTDKR--FQ--------------PVHDLTIGVEFGARMVTI--------------   50 (211)
Q Consensus         2 ~~~~~~-~i~vvG~~~~GKSsli~~l~~~~--~~--------------~~~~~~~~~~~~~~~~~~--------------   50 (211)
                      +....+ +|+|+|+.++|||||+.+|+...  ..              .+.....+..........              
T Consensus        12 ~~~~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~   91 (341)
T d1n0ua2          12 DKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKT   91 (341)
T ss_dssp             HCGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCC
T ss_pred             cCcccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccc
Confidence            344456 59999999999999999997211  10              000011111111111111              


Q ss_pred             CCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCC
Q 028251           51 DGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL  123 (211)
Q Consensus        51 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  123 (211)
                      ++....++|+||||+..|.......++.+|++|+|+|+.+.-..+...-|.....    .+.|.++++||+|.
T Consensus        92 ~~~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~----~~~p~i~viNKiDr  160 (341)
T d1n0ua2          92 DGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDR  160 (341)
T ss_dssp             CSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHH
T ss_pred             cccceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHH----cCCCeEEEEECccc
Confidence            3356779999999999999999999999999999999999765555444433332    28999999999996

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.36  E-value=5e-13  Score=99.48  Aligned_cols=110  Identities=14%  Similarity=0.013  Sum_probs=66.0

Q ss_pred             EEEEEeCCCccchhhchHHH-----hccccEEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCC
Q 028251           56 KLQIWDTAGQESFRSITRSY-----YRGAAGALLVYDITR---RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR  127 (211)
Q Consensus        56 ~l~l~D~~G~~~~~~~~~~~-----~~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  127 (211)
                      .+.+.|+||+..+.......     ....+.+++++|+..   +..+.............  ...|.++++||+|+....
T Consensus        96 ~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~--~~~~~ivvinK~D~~~~~  173 (244)
T d1yrba1          96 DYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLR--LGATTIPALNKVDLLSEE  173 (244)
T ss_dssp             SEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHH--HTSCEEEEECCGGGCCHH
T ss_pred             ceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHH--hCCCceeeeeccccccHH
Confidence            47889999987655432222     124558899998754   33332222111111111  278999999999986532


Q ss_pred             CCCH-----------------------HHHHH---HHHH--cCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 028251          128 AVSK-----------------------EEGEQ---FAKE--NGLLFLEASARTAQNVEEAFIKTAAKI  167 (211)
Q Consensus       128 ~~~~-----------------------~~~~~---~~~~--~~~~~~~~s~~~~~~i~~~~~~i~~~~  167 (211)
                      ....                       .....   ....  ..++++++||++|+|+++++..|.+.+
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~  241 (244)
T d1yrba1         174 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  241 (244)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            1100                       00000   0111  356799999999999999998888764

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.26  E-value=7.1e-12  Score=96.97  Aligned_cols=112  Identities=8%  Similarity=0.055  Sum_probs=67.6

Q ss_pred             EEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHH
Q 028251           55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEG  134 (211)
Q Consensus        55 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~  134 (211)
                      +.+.|++|.|....   ......-+|.+++|......+..+.+   ...+.+     .+-++|+||+|+.+.........
T Consensus       144 ~d~iiiETVG~gq~---e~~~~~~~D~~v~v~~p~~GD~iQ~~---k~gilE-----~aDi~vvNKaD~~~~~~~~~~~~  212 (323)
T d2qm8a1         144 FDVILVETVGVGQS---ETAVADLTDFFLVLMLPGAGDELQGI---KKGIFE-----LADMIAVNKADDGDGERRASAAA  212 (323)
T ss_dssp             CCEEEEEECSSSSC---HHHHHTTSSEEEEEECSCC------C---CTTHHH-----HCSEEEEECCSTTCCHHHHHHHH
T ss_pred             CCeEEEeehhhhhh---hhhhhcccceEEEEeeccchhhhhhh---hhhHhh-----hhheeeEeccccccchHHHHHHH
Confidence            45678888875322   23344569999999998876543322   222222     23499999999865432221211


Q ss_pred             HHHHHH----------cCCcEEEEeCCCCCCHHHHHHHHHHHHHHHHhhcccc
Q 028251          135 EQFAKE----------NGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALD  177 (211)
Q Consensus       135 ~~~~~~----------~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~~~~~~~  177 (211)
                      ..+...          ...+++.+|++++.|++++++.|.+........+...
T Consensus       213 ~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~~~~~G~l~  265 (323)
T d2qm8a1         213 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSKLTATGEIA  265 (323)
T ss_dssp             HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             HHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHHHHHCChHH
Confidence            112111          3456999999999999999999988776655544433

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.24  E-value=7e-12  Score=97.09  Aligned_cols=110  Identities=15%  Similarity=0.038  Sum_probs=62.3

Q ss_pred             EEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC--CHHHH
Q 028251           57 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--SKEEG  134 (211)
Q Consensus        57 l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~  134 (211)
                      +.|++|.|...   ....+...+|.+++|.++...+.   ++.....+.+.     +-++|+||+|.......  ...+.
T Consensus       149 ~iliEtvG~gq---~e~~i~~~aD~~l~v~~P~~Gd~---iq~~k~gi~e~-----aDi~VvNKaD~~~~~~~~~~~~~~  217 (327)
T d2p67a1         149 VVIVETVGVGQ---SETEVARMVDCFISLQIAGGGDD---LQGIKKGLMEV-----ADLIVINKDDGDNHTNVAIARHMY  217 (327)
T ss_dssp             EEEEEEECCTT---HHHHHHTTCSEEEEEECC---------CCCCHHHHHH-----CSEEEECCCCTTCHHHHHHHHHHH
T ss_pred             eEEEeeccccc---cchhhhhccceEEEEecCCCchh---hhhhchhhhcc-----ccEEEEEeecccchHHHHHHHHHH
Confidence            45566655321   12245667999999988755443   32222333333     33889999998642211  11112


Q ss_pred             HHHHHH-------cCCcEEEEeCCCCCCHHHHHHHHHHHHHHHHhhcccc
Q 028251          135 EQFAKE-------NGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALD  177 (211)
Q Consensus       135 ~~~~~~-------~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~~~~~~~  177 (211)
                      ......       ...+++.+||.+|.|++++++.|.+......+.+...
T Consensus       218 ~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~~l~~sG~l~  267 (327)
T d2p67a1         218 ESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTASGRLQ  267 (327)
T ss_dssp             HHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             HHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHHHHHHhCCHHH
Confidence            222111       2346999999999999999999987766555444433

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.21  E-value=1.2e-10  Score=88.32  Aligned_cols=83  Identities=22%  Similarity=0.201  Sum_probs=55.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCE---------------EEEEEEEeCCCccc---
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGR---------------PIKLQIWDTAGQES---   67 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~l~l~D~~G~~~---   67 (211)
                      .++|.+||.|+||||||+++++.........|+++.+.....+.+.+.               ...+.++|+||.-.   
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~   81 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence            479999999999999999999988765555455454444444444332               13578999999422   


Q ss_pred             ----hhhchHHHhccccEEEEEEEC
Q 028251           68 ----FRSITRSYYRGAAGALLVYDI   88 (211)
Q Consensus        68 ----~~~~~~~~~~~~d~~i~v~d~   88 (211)
                          .......-++.+|++|+|+|+
T Consensus        82 ~g~Glg~~FL~~ir~~d~LihVVr~  106 (278)
T d1jala1          82 KGEGLGNKFLANIRETDAIGHVVRC  106 (278)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEEC
T ss_pred             cCCCccHHHHHHHHhccceEEEeec
Confidence                122344557899999999986

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.12  E-value=3.8e-10  Score=86.35  Aligned_cols=120  Identities=18%  Similarity=0.204  Sum_probs=71.8

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCC-CCeeeEEEEEEEEE----------CC---------------------
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVEFGARMVTI----------DG---------------------   52 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~----------~~---------------------   52 (211)
                      ..++|+|+|..++|||||+|+|++..+.+... +++..-.......-          .+                     
T Consensus        25 ~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (299)
T d2akab1          25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  104 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhh
Confidence            35689999999999999999999988744333 32211111111100          00                     


Q ss_pred             ----------E--------EEEEEEEeCCCccc-------------hhhchHHHhcccc-EEEEEEECCCHHHHHHHHHH
Q 028251           53 ----------R--------PIKLQIWDTAGQES-------------FRSITRSYYRGAA-GALLVYDITRRETFNHLSSW  100 (211)
Q Consensus        53 ----------~--------~~~l~l~D~~G~~~-------------~~~~~~~~~~~~d-~~i~v~d~~~~~~~~~~~~~  100 (211)
                                .        ...+.|+|+||...             ...+...|+...+ ++++|.++....+......+
T Consensus       105 ~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~  184 (299)
T d2akab1         105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI  184 (299)
T ss_dssp             SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred             CCCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHH
Confidence                      0        01377999999432             1234556666676 45556666654443333344


Q ss_pred             HHHHHHhcCCCCeEEEEEecCCCCCCC
Q 028251          101 LEDARQHANPNMSIMLVGNKCDLAHRR  127 (211)
Q Consensus       101 ~~~~~~~~~~~~p~ivv~nK~Dl~~~~  127 (211)
                      ...+   .....++++|+||+|..++.
T Consensus       185 ~~~~---~~~~~r~i~Vltk~D~~~~~  208 (299)
T d2akab1         185 AKEV---DPQGQRTIGVITKLDLMDEG  208 (299)
T ss_dssp             HHHH---CTTCSSEEEEEECGGGSCTT
T ss_pred             HHHh---CcCCCceeeEEeccccccch
Confidence            3333   33467899999999986643

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.00  E-value=3.1e-10  Score=87.73  Aligned_cols=83  Identities=19%  Similarity=0.107  Sum_probs=44.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEE------E----------------ECCEEEEEEEEeCCC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMV------T----------------IDGRPIKLQIWDTAG   64 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~------~----------------~~~~~~~l~l~D~~G   64 (211)
                      ++|+++|.|+||||||+|+|++........|+++.+......      .                .......+.++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            589999999999999999999877655444443332221111      0                012335789999999


Q ss_pred             ccch-------hhchHHHhccccEEEEEEECC
Q 028251           65 QESF-------RSITRSYYRGAAGALLVYDIT   89 (211)
Q Consensus        65 ~~~~-------~~~~~~~~~~~d~~i~v~d~~   89 (211)
                      .-..       .......++.+|++++|+|+.
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~  112 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDAT  112 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETT
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEeccc
Confidence            4221       111223357899999999985

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.99  E-value=8.1e-10  Score=84.80  Aligned_cols=117  Identities=15%  Similarity=0.179  Sum_probs=68.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEE------------------------------------
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVT------------------------------------   49 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~------------------------------------   49 (211)
                      .++|+|+|..++|||||+|+|++..+.+....+.+.......+.                                    
T Consensus        24 lP~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  103 (306)
T d1jwyb_          24 LPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEII  103 (306)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHhCCCCCCCCCCccccCCEEEEEecCCcccCccchhhhhHHhhcCCceecCHHHHHHHHH
Confidence            46899999999999999999999887544332211111111000                                    


Q ss_pred             -----------------------ECCEEEEEEEEeCCCccc-------------hhhchHHHhccccEEEEEE-ECCCHH
Q 028251           50 -----------------------IDGRPIKLQIWDTAGQES-------------FRSITRSYYRGAAGALLVY-DITRRE   92 (211)
Q Consensus        50 -----------------------~~~~~~~l~l~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~-d~~~~~   92 (211)
                                             ... ...+.|+|+||...             ...+...|+..++.+|+++ +.....
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~  182 (306)
T d1jwyb_         104 RDTDRMTGKNKGISAQPINLKIYSPH-VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL  182 (306)
T ss_dssp             HHCC--------CCCCCEEEEEEETT-SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS
T ss_pred             HHHHHhcCCCCcccccceEEEecCCC-CCCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccc
Confidence                                   000 11377999999432             2245667888899766665 443322


Q ss_pred             HHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCC
Q 028251           93 TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR  126 (211)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  126 (211)
                      .......+.   ........++++|+||+|....
T Consensus       183 ~~~~~~~~~---~~~~~~~~r~i~Vitk~D~~~~  213 (306)
T d1jwyb_         183 ANSDALQLA---KEVDPEGKRTIGVITKLDLMDK  213 (306)
T ss_dssp             TTCSHHHHH---HHHCSSCSSEEEEEECTTSSCS
T ss_pred             cccHHHHHH---HHhCcCCCeEEEEEeccccccc
Confidence            212222332   2333345789999999998644

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.93  E-value=1.2e-09  Score=83.58  Aligned_cols=86  Identities=21%  Similarity=0.219  Sum_probs=58.9

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCCC-CCCCCCCeeeEEEEEEEEECCE---------------EEEEEEEeCCCccc-
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMVTIDGR---------------PIKLQIWDTAGQES-   67 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~l~l~D~~G~~~-   67 (211)
                      ..++|.++|.|+||||||+|++++... .....|.++.+.....+.+.+.               ...+.+.|+||... 
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~g   88 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   88 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeeccccccc
Confidence            458999999999999999999998754 2333444454444444444431               24678999998332 


Q ss_pred             ------hhhchHHHhccccEEEEEEECCC
Q 028251           68 ------FRSITRSYYRGAAGALLVYDITR   90 (211)
Q Consensus        68 ------~~~~~~~~~~~~d~~i~v~d~~~   90 (211)
                            .......-++.+|++|+|+|+.+
T Consensus        89 A~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          89 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cccccccHHHHHHHhhccceeEEEEeccC
Confidence                  12234455689999999998754

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.60  E-value=2.5e-08  Score=75.11  Aligned_cols=59  Identities=27%  Similarity=0.409  Sum_probs=37.5

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcc
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE   66 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~   66 (211)
                      ...++|+|+|.|+||||||+|+|.+.........+ |.|.....+..+.   .+.++||||.-
T Consensus       110 ~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~p-G~Tr~~~~i~~~~---~~~l~DTPGi~  168 (273)
T d1puja_         110 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRP-GITTSQQWVKVGK---ELELLDTPGIL  168 (273)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred             CCceEEEEEecCccchhhhhhhhhccceEEECCcc-cccccceEEECCC---CeEEecCCCcc
Confidence            35689999999999999999999988765544333 5555544444432   36799999953

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.34  E-value=6.3e-07  Score=64.84  Aligned_cols=84  Identities=18%  Similarity=0.164  Sum_probs=58.5

Q ss_pred             HhccccEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH--cCCcEEEEeCC
Q 028251           75 YYRGAAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE--NGLLFLEASAR  151 (211)
Q Consensus        75 ~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~s~~  151 (211)
                      ...+.|.+++|+++.+|. +...+..++-.....   +.|.+||+||+||.+...  .+....+...  ...+++.+|++
T Consensus         7 ~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~---~i~pvIvlnK~DL~~~~~--~~~~~~~~~~~~~~~~v~~vSa~   81 (225)
T d1u0la2           7 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEKN---ELETVMVINKMDLYDEDD--LRKVRELEEIYSGLYPIVKTSAK   81 (225)
T ss_dssp             TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT---TCEEEEEECCGGGCCHHH--HHHHHHHHHHHTTTSCEEECCTT
T ss_pred             CcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHc---CCCEEEEEeCcccCCHHH--HHHHHHhhcccccceeEEEeccc
Confidence            346899999999998864 445556665554443   899999999999965321  1222233332  34689999999


Q ss_pred             CCCCHHHHHHHH
Q 028251          152 TAQNVEEAFIKT  163 (211)
Q Consensus       152 ~~~~i~~~~~~i  163 (211)
                      ++.|++++...+
T Consensus        82 ~~~g~~~L~~~l   93 (225)
T d1u0la2          82 TGMGIEELKEYL   93 (225)
T ss_dssp             TCTTHHHHHHHH
T ss_pred             cchhHhhHHHHh
Confidence            999998886654

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.32  E-value=6.8e-07  Score=67.05  Aligned_cols=95  Identities=12%  Similarity=0.086  Sum_probs=67.7

Q ss_pred             chHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeC
Q 028251           71 ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASA  150 (211)
Q Consensus        71 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~  150 (211)
                      .....+..+|++|+|+|+.+|.+..+.  .+..+   . .++|.++|+||+|+.+..  ..+...++....+...+.+|+
T Consensus         8 ~i~~~i~~~DvIl~V~DaR~P~ss~~~--~l~~~---~-~~Kp~IlVlNK~DLv~~~--~~~~w~~~f~~~~~~~i~isa   79 (273)
T d1puja_           8 EVTEKLKLIDIVYELVDARIPMSSRNP--MIEDI---L-KNKPRIMLLNKADKADAA--VTQQWKEHFENQGIRSLSINS   79 (273)
T ss_dssp             HHHHHGGGCSEEEEEEETTSTTTTSCH--HHHHH---C-SSSCEEEEEECGGGSCHH--HHHHHHHHHHTTTCCEEECCT
T ss_pred             HHHHHHHhCCEEEEEEECCCCCCCCCH--HHHHH---H-cCCCeEEEEECccCCchH--HHHHHHHHHHhcCCccceeec
Confidence            345678899999999999998654321  12222   2 278999999999996532  123344455556778999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhh
Q 028251          151 RTAQNVEEAFIKTAAKILQNIQE  173 (211)
Q Consensus       151 ~~~~~i~~~~~~i~~~~~~~~~~  173 (211)
                      .++.+..++...+.+.+.+..+.
T Consensus        80 ~~~~~~~~~~~~~~~~l~~~~~~  102 (273)
T d1puja_          80 VNGQGLNQIVPASKEILQEKFDR  102 (273)
T ss_dssp             TTCTTGGGHHHHHHHHHHHHHHH
T ss_pred             ccCCCccccchhhhhhhhhhhhh
Confidence            99999999888887776665443

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.30  E-value=2e-06  Score=59.71  Aligned_cols=23  Identities=39%  Similarity=0.772  Sum_probs=21.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      +||+|+|++|+|||||++.+.+.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhc
Confidence            58999999999999999999863

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.28  E-value=2.2e-07  Score=67.33  Aligned_cols=58  Identities=24%  Similarity=0.240  Sum_probs=34.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCC------eeeEEEEEEEEECCEEEEEEEEeCCCccch
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT------IGVEFGARMVTIDGRPIKLQIWDTAGQESF   68 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~   68 (211)
                      ..+++|++|||||||+|+|.+........-.      .-+|.....+.+++..   .++||||...+
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~gg---~iiDTPG~r~~  160 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGG---YVVDTPGFANL  160 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSC---EEESSCSSTTC
T ss_pred             eEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCCc---EEEeCCccccc
Confidence            5689999999999999999875432221100      0112222234454433   48999996543

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.21  E-value=1.9e-05  Score=57.02  Aligned_cols=25  Identities=24%  Similarity=0.425  Sum_probs=21.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCC
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .+-++|.|..|||||||+++++...
T Consensus         3 iPv~iitGFLGaGKTTll~~lL~~~   27 (222)
T d1nija1           3 IAVTLLTGFLGAGKTTLLRHILNEQ   27 (222)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             CCEEEEeeCCCCCHHHHHHHHHhcC
Confidence            3557899999999999999998753

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.06  E-value=1.1e-05  Score=57.78  Aligned_cols=92  Identities=22%  Similarity=0.118  Sum_probs=52.4

Q ss_pred             EEEEEEeCCCccchhhc----hHHHhc--------cccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCC
Q 028251           55 IKLQIWDTAGQESFRSI----TRSYYR--------GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD  122 (211)
Q Consensus        55 ~~l~l~D~~G~~~~~~~----~~~~~~--------~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  122 (211)
                      ..+.|+||+|.......    ...+..        ..+-.++|+|+....  ..+..........    -+--++++|.|
T Consensus        94 ~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~--~~~~~~~~~~~~~----~~~~lI~TKlD  167 (213)
T d1vmaa2          94 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQAKIFKEAV----NVTGIILTKLD  167 (213)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHHHHHHHHHS----CCCEEEEECGG
T ss_pred             CCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCc--chhhhhhhhcccc----CCceEEEeccc
Confidence            35789999995443331    111111        145688999986642  2232322222221    24467899999


Q ss_pred             CCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Q 028251          123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEE  158 (211)
Q Consensus       123 l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  158 (211)
                      -..    ..-.+-..+...+.|+..++  +|.++++
T Consensus       168 e~~----~~G~~l~~~~~~~~Pi~~i~--~Gq~v~D  197 (213)
T d1vmaa2         168 GTA----KGGITLAIARELGIPIKFIG--VGEKAED  197 (213)
T ss_dssp             GCS----CTTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             CCC----cccHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            632    12345566677889988776  5666654

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.04  E-value=5.2e-07  Score=65.51  Aligned_cols=23  Identities=35%  Similarity=0.554  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      ..+++|++|||||||+|+|.+..
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC--
T ss_pred             eEEEECCCCccHHHHHHhhccHh
Confidence            46799999999999999998763

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.03  E-value=8.9e-07  Score=64.27  Aligned_cols=85  Identities=12%  Similarity=0.125  Sum_probs=59.3

Q ss_pred             hccccEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCC--HHHHHHHHHHcCCcEEEEeCCC
Q 028251           76 YRGAAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS--KEEGEQFAKENGLLFLEASART  152 (211)
Q Consensus        76 ~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~s~~~  152 (211)
                      ..+.|.+++|+++.+|. ++..+..++-....   .+.+.+||+||+||.+..+..  .+.........+++++.+|+.+
T Consensus         8 vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~---~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~Sa~~   84 (231)
T d1t9ha2           8 ICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKD   84 (231)
T ss_dssp             EECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHH
T ss_pred             ccccCEEEEEEECCCCCCCHHHHHHHHHHHHH---cCCCEEEEEecccccccHHHHHHHHHHHHHHhhccccceeeecCC
Confidence            46899999999998864 45555555444433   388999999999996542211  1122234455789999999999


Q ss_pred             CCCHHHHHHHH
Q 028251          153 AQNVEEAFIKT  163 (211)
Q Consensus       153 ~~~i~~~~~~i  163 (211)
                      +.|++++...+
T Consensus        85 ~~gl~~L~~~l   95 (231)
T d1t9ha2          85 QDSLADIIPHF   95 (231)
T ss_dssp             HTTCTTTGGGG
T ss_pred             hhHHHHHHHhh
Confidence            99988876544

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.93  E-value=7.8e-06  Score=58.38  Aligned_cols=91  Identities=12%  Similarity=0.068  Sum_probs=51.1

Q ss_pred             EEEEEEeCCCccchhhc----hHHHh--------ccccEEEEEEECCCH-HHHHHHHHHHHHHHHhcCCCCeEEEEEecC
Q 028251           55 IKLQIWDTAGQESFRSI----TRSYY--------RGAAGALLVYDITRR-ETFNHLSSWLEDARQHANPNMSIMLVGNKC  121 (211)
Q Consensus        55 ~~l~l~D~~G~~~~~~~----~~~~~--------~~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  121 (211)
                      ..+.|+||+|.......    ...+.        ...+-.++|+|+... +....+..++..+      + +--++++|.
T Consensus        89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~------~-~~~lI~TKl  161 (207)
T d1okkd2          89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAV------G-LTGVIVTKL  161 (207)
T ss_dssp             CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHH------C-CSEEEEECT
T ss_pred             CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhcc------C-CceEEEecc
Confidence            45789999996543331    11111        234678899998764 3333333333322      1 226688999


Q ss_pred             CCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Q 028251          122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEE  158 (211)
Q Consensus       122 Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  158 (211)
                      |-...-    -.+-......+.|+..++.  |++.++
T Consensus       162 Det~~~----G~~l~~~~~~~~Pi~~i~~--Gq~p~D  192 (207)
T d1okkd2         162 DGTAKG----GVLIPIVRTLKVPIKFVGV--GEGPDD  192 (207)
T ss_dssp             TSSCCC----TTHHHHHHHHCCCEEEEEC--SSSTTC
T ss_pred             CCCCCc----cHHHHHHHHHCCCEEEEeC--CCChHh
Confidence            964321    2244556667888777763  444443

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.92  E-value=9.2e-06  Score=58.16  Aligned_cols=92  Identities=14%  Similarity=0.100  Sum_probs=52.5

Q ss_pred             EEEEEEeCCCccchhh------chHHH--hccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCC
Q 028251           55 IKLQIWDTAGQESFRS------ITRSY--YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR  126 (211)
Q Consensus        55 ~~l~l~D~~G~~~~~~------~~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  126 (211)
                      ..+.|+||+|...+..      ....+  .-..+-+++|+++.....  .+......... .  + +--++++|.|-.. 
T Consensus        95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~--~~~~~~~~~~~-~--~-~~~lI~TKlDet~-  167 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK--AYDLASKFNQA-S--K-IGTIIITKMDGTA-  167 (211)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--HHHHHHHHHHH-C--T-TEEEEEECTTSCS-
T ss_pred             CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcc--hHHHHhhhhcc-c--C-cceEEEecccCCC-
Confidence            3578999999643321      11111  123456888998876432  22222222221 1  2 2346799999633 


Q ss_pred             CCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Q 028251          127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEE  158 (211)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  158 (211)
                         ..-.+-..+...++|+..++  .|.++++
T Consensus       168 ---~~G~~l~~~~~~~lPi~~it--~Gq~v~D  194 (211)
T d1j8yf2         168 ---KGGGALSAVAATGATIKFIG--TGEKIDE  194 (211)
T ss_dssp             ---CHHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             ---cccHHHHHHHHHCcCEEEEe--CCCCccc
Confidence               34556677778899988777  4666654

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.90  E-value=1.1e-05  Score=57.63  Aligned_cols=92  Identities=17%  Similarity=0.088  Sum_probs=51.8

Q ss_pred             EEEEEEeCCCccchhhc----hHH---Hhc-----cccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCC
Q 028251           55 IKLQIWDTAGQESFRSI----TRS---YYR-----GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD  122 (211)
Q Consensus        55 ~~l~l~D~~G~~~~~~~----~~~---~~~-----~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  122 (211)
                      ..+.|+||+|.......    ...   ...     ..+-.++|+|+....  ..+..........    -+--++++|.|
T Consensus        92 ~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~--~~~~~~~~~~~~~----~~~~lIlTKlD  165 (211)
T d2qy9a2          92 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ--NAVSQAKLFHEAV----GLTGITLTKLD  165 (211)
T ss_dssp             CSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTH--HHHHHHHHHHHHS----CCCEEEEECCT
T ss_pred             CCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCc--chHHHHhhhhhcc----CCceEEEeecC
Confidence            35789999995433321    111   122     245788899986642  2222222222221    23467889999


Q ss_pred             CCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Q 028251          123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEE  158 (211)
Q Consensus       123 l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  158 (211)
                      -...    .-.+-..+...+.|+..++  .|+++++
T Consensus       166 e~~~----~G~~l~~~~~~~~Pi~~i~--~Gq~v~D  195 (211)
T d2qy9a2         166 GTAK----GGVIFSVADQFGIPIRYIG--VGERIED  195 (211)
T ss_dssp             TCTT----TTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             CCCC----ccHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            6432    2334556667889988776  5666644

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.82  E-value=1e-05  Score=57.85  Aligned_cols=85  Identities=21%  Similarity=0.099  Sum_probs=48.4

Q ss_pred             EEEEEEeCCCccchhhc----hHHH--hccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCC
Q 028251           55 IKLQIWDTAGQESFRSI----TRSY--YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA  128 (211)
Q Consensus        55 ~~l~l~D~~G~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  128 (211)
                      .++.|+||+|.......    +..+  ..+.+-+++|.|+.....  .+. ....+....  + +--++++|.|-..   
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~--~~~-~~~~f~~~~--~-~~~~I~TKlDe~~---  163 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQE--ALS-VARAFDEKV--G-VTGLVLTKLDGDA---  163 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHH--HHH-HHHHHHHHT--C-CCEEEEECGGGCS---
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchh--HHH-HHHHHHhhC--C-CCeeEEeecCccc---
Confidence            35789999995443331    1112  235578899999876532  121 122222221  1 2357889999633   


Q ss_pred             CCHHHHHHHHHHcCCcEEEEe
Q 028251          129 VSKEEGEQFAKENGLLFLEAS  149 (211)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~s  149 (211)
                       ..-.+-..+...+.|+.+++
T Consensus       164 -~~G~~l~~~~~~~~Pi~~i~  183 (207)
T d1ls1a2         164 -RGGAALSARHVTGKPIYFAG  183 (207)
T ss_dssp             -SCHHHHHHHHHHCCCEEEEC
T ss_pred             -cchHHHHHHHHHCCCEEEEe
Confidence             22445566677888877665

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.55  E-value=2.8e-05  Score=54.66  Aligned_cols=28  Identities=18%  Similarity=0.224  Sum_probs=25.2

Q ss_pred             CCCCceeeEEEEcCCCCCHHHHHHHHHh
Q 028251            1 MSYDYLFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      |....+..|+|+|++||||||+.++|..
T Consensus         1 ~~~~kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           1 MEKSKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCCCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            7777888899999999999999999864

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.52  E-value=2.1e-05  Score=54.46  Aligned_cols=41  Identities=10%  Similarity=0.188  Sum_probs=28.2

Q ss_pred             HHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHHhhcccc
Q 028251          134 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALD  177 (211)
Q Consensus       134 ~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~~~~~~~  177 (211)
                      ..+.....+.+++.+..   .++++.++.+.+.+.+.+++..+.
T Consensus       148 ~~~~l~~~~~~~i~i~~---~~~~e~~~~i~~~I~~ll~~~~~~  188 (192)
T d1lw7a2         148 LKKLLDKYKVPYIEIES---PSYLDRYNQVKAVIEKVLNEEEIS  188 (192)
T ss_dssp             HHHHHHGGGCCCEEEEC---SSHHHHHHHHHHHHHHHTSCCCCS
T ss_pred             HHHHHHHCCCCEEEeCC---CCHHHHHHHHHHHHHHHHCcCcHh
Confidence            34455556777777753   478898888888887776655443

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.49  E-value=3.1e-05  Score=53.01  Aligned_cols=23  Identities=30%  Similarity=0.509  Sum_probs=20.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHh
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      .++|+|+|++||||||+.+.|..
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999999863

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.44  E-value=4.2e-05  Score=52.44  Aligned_cols=26  Identities=19%  Similarity=0.323  Sum_probs=22.9

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhC
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      +..++|+|.|++||||||+.+.|...
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            56789999999999999999999643

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.40  E-value=4.3e-05  Score=52.13  Aligned_cols=22  Identities=23%  Similarity=0.241  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHh
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      +-|+|+|++|||||||+++|..
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            4589999999999999999974

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.30  E-value=7e-05  Score=51.81  Aligned_cols=22  Identities=18%  Similarity=0.403  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHh
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ++|+|+|+|||||||+.+.|..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998864

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.28  E-value=7.3e-05  Score=50.07  Aligned_cols=21  Identities=38%  Similarity=0.525  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 028251            9 YIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         9 i~vvG~~~~GKSsli~~l~~~   29 (211)
                      |++.|++|||||||.++|...
T Consensus         5 Iii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            788999999999999998743

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.28  E-value=8.2e-05  Score=52.01  Aligned_cols=24  Identities=17%  Similarity=0.344  Sum_probs=21.5

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHh
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ..++|+++|+|||||||+.+.|..
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999999998874

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.25  E-value=6.8e-05  Score=52.43  Aligned_cols=24  Identities=21%  Similarity=0.181  Sum_probs=21.2

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHh
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      .+++|+|.|++||||||+.+.|..
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            367899999999999999998863

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.21  E-value=0.0001  Score=51.20  Aligned_cols=23  Identities=22%  Similarity=0.447  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      ++|+|+|+|||||||+.+.|...
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999988743

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.20  E-value=0.0001  Score=51.00  Aligned_cols=23  Identities=22%  Similarity=0.624  Sum_probs=20.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      ++|+|+|++||||||+.+.|...
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999998743

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.15  E-value=0.00012  Score=50.65  Aligned_cols=22  Identities=18%  Similarity=0.338  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHh
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ++|+|+|++||||||..+.|..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999988863

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.15  E-value=0.00012  Score=49.87  Aligned_cols=22  Identities=41%  Similarity=0.629  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      -|+|.|++||||||+.++|...
T Consensus         4 lI~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3889999999999999999743

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.14  E-value=0.00013  Score=51.12  Aligned_cols=25  Identities=28%  Similarity=0.478  Sum_probs=22.2

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhC
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      ..++|+|+|+|||||||+...|...
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cceeEEEECCCCCCHHHHHHHHHHH
Confidence            4589999999999999999998753

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.00026  Score=52.56  Aligned_cols=60  Identities=22%  Similarity=0.145  Sum_probs=39.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhCCCCCC-----CCCCeeeEEEEEEEEECCEEEEEEEEeCCCcc
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPV-----HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE   66 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~   66 (211)
                      ..-|.|+|+.++|||+|+|.|++....-.     ...|.|+......+ .++....+.++||.|..
T Consensus        32 v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~-~~~~~~~~~~lDteG~~   96 (277)
T d1f5na2          32 MVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPH-PKKPGHILVLLDTEGLG   96 (277)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEEC-SSSTTCEEEEEEECCBC
T ss_pred             EEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeec-cCCCCceEEEEeccccc
Confidence            45789999999999999999997664221     12234544433222 24445568899999954

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.11  E-value=0.00015  Score=50.26  Aligned_cols=23  Identities=22%  Similarity=0.494  Sum_probs=20.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHh
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      .++|+|+|++||||||+.+.|..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999999864

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.10  E-value=0.00013  Score=51.63  Aligned_cols=23  Identities=26%  Similarity=0.352  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .++++|+.|+|||||++.+.+.-
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            47899999999999999998643

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.08  E-value=0.00015  Score=49.41  Aligned_cols=20  Identities=20%  Similarity=0.493  Sum_probs=17.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 028251            9 YIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         9 i~vvG~~~~GKSsli~~l~~   28 (211)
                      |.|+|.+|||||||+++|..
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            46999999999999999863

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.04  E-value=0.00016  Score=52.56  Aligned_cols=22  Identities=32%  Similarity=0.327  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      +|+|+|++|+|||||++.+.+-
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl   52 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRF   52 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            6899999999999999999864

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.04  E-value=0.00016  Score=48.64  Aligned_cols=22  Identities=27%  Similarity=0.522  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .|+++|++||||||+.+.|...
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998754

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.03  E-value=0.00021  Score=49.97  Aligned_cols=23  Identities=17%  Similarity=0.406  Sum_probs=20.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHh
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ++.|+|+|++||||||....|..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999998864

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.02  E-value=0.00019  Score=51.88  Aligned_cols=23  Identities=30%  Similarity=0.481  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      -++++|++|||||||++.+.+-.
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            47899999999999999987653

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.00  E-value=0.0002  Score=49.95  Aligned_cols=21  Identities=38%  Similarity=0.607  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 028251            9 YIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         9 i~vvG~~~~GKSsli~~l~~~   29 (211)
                      |+|+||+||||+||+++|...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999754

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.00  E-value=0.00017  Score=49.20  Aligned_cols=21  Identities=29%  Similarity=0.419  Sum_probs=19.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHH
Q 028251            7 FKYIIIGDTGVGKSCLLLQFT   27 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~   27 (211)
                      ++|+++|++||||||+.+.|.
T Consensus         2 p~IvliG~~G~GKSTig~~La   22 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLA   22 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHH
Confidence            579999999999999998885

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=96.99  E-value=0.0002  Score=52.15  Aligned_cols=22  Identities=23%  Similarity=0.277  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .++|+|++|+|||||++.+.+-
T Consensus        30 ~vaivG~sGsGKSTLl~ll~gl   51 (242)
T d1mv5a_          30 IIAFAGPSGGGKSTIFSLLERF   51 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            6899999999999999998854

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.0002  Score=49.14  Aligned_cols=21  Identities=29%  Similarity=0.600  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHHh
Q 028251            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~   28 (211)
                      .|.|.|++|+|||||++.+..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            489999999999999999863

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.98  E-value=0.00063  Score=45.93  Aligned_cols=24  Identities=25%  Similarity=0.314  Sum_probs=20.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .-|++-|+-|+|||||++.+...-
T Consensus        34 ~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          34 IMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             eEEEEecCCCccHHHHHHHHHhhc
Confidence            358889999999999999998554

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.97  E-value=0.00022  Score=51.71  Aligned_cols=22  Identities=32%  Similarity=0.523  Sum_probs=19.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q 028251            9 YIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         9 i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      ++++|++|||||||++.+.+-.
T Consensus        27 ~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          27 CVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCChHHHHHHHHHcCC
Confidence            5789999999999999999654

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.95  E-value=0.00032  Score=49.05  Aligned_cols=26  Identities=19%  Similarity=0.318  Sum_probs=22.1

Q ss_pred             CCceeeEEEEcCCCCCHHHHHHHHHh
Q 028251            3 YDYLFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         3 ~~~~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      .+...-|+|+|++||||||+...|..
T Consensus         5 ~~~~~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           5 PDQVSVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            44566799999999999999999974

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.95  E-value=0.00021  Score=52.37  Aligned_cols=22  Identities=27%  Similarity=0.407  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .++|+|++|||||||++.+.+-
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl   64 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRF   64 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCChHHHHHHHHhcc
Confidence            6899999999999999998854

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.93  E-value=0.0003  Score=48.42  Aligned_cols=25  Identities=20%  Similarity=0.206  Sum_probs=21.3

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHh
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ....-|+++|.+||||||+.+++..
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3456789999999999999999863

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.93  E-value=0.00022  Score=51.47  Aligned_cols=22  Identities=32%  Similarity=0.324  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      -++++|++|||||||++.+.+-
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl   54 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCL   54 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCcchhhHhccCC
Confidence            4789999999999999988754

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.93  E-value=0.00024  Score=49.23  Aligned_cols=21  Identities=24%  Similarity=0.509  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 028251            9 YIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         9 i~vvG~~~~GKSsli~~l~~~   29 (211)
                      |+|+||+|||||||++.|...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            789999999999999999754

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.00024  Score=52.05  Aligned_cols=22  Identities=23%  Similarity=0.379  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .++|+|++|||||||++.+.+-
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl   63 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNL   63 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcc
Confidence            6899999999999999998854

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.00025  Score=49.09  Aligned_cols=21  Identities=24%  Similarity=0.553  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 028251            9 YIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         9 i~vvG~~~~GKSsli~~l~~~   29 (211)
                      |+|+||+|+||+||+++|+..
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            889999999999999999843

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.92  E-value=0.00025  Score=51.38  Aligned_cols=23  Identities=22%  Similarity=0.431  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      -++++|++|||||||++.+.+-.
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            47899999999999999998653

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.92  E-value=0.00025  Score=52.84  Aligned_cols=23  Identities=35%  Similarity=0.520  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|++|+|||||++.+.+.-
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            58999999999999999998643

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.90  E-value=0.00031  Score=49.48  Aligned_cols=22  Identities=18%  Similarity=0.304  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHh
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      .-|+++|.|||||||+.++|..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999999973

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=96.87  E-value=0.00026  Score=51.49  Aligned_cols=23  Identities=26%  Similarity=0.368  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      -++++|++|+|||||++.+.+-.
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            37899999999999999998654

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.84  E-value=0.00032  Score=49.03  Aligned_cols=20  Identities=35%  Similarity=0.612  Sum_probs=18.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 028251            9 YIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         9 i~vvG~~~~GKSsli~~l~~   28 (211)
                      |+|+||+||||+||+++|..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999864

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.83  E-value=0.0003  Score=51.08  Aligned_cols=23  Identities=26%  Similarity=0.375  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      -++++|++|+|||||++.+.+..
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            36899999999999999998764

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=96.83  E-value=0.00022  Score=51.57  Aligned_cols=22  Identities=32%  Similarity=0.537  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      -++++|++|+|||||++.+.+-
T Consensus        27 i~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            3789999999999999999974

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.83  E-value=0.00032  Score=50.86  Aligned_cols=23  Identities=26%  Similarity=0.442  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .++++|++|||||||++.+.+-.
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            47899999999999999998654

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.83  E-value=0.00031  Score=48.28  Aligned_cols=19  Identities=21%  Similarity=0.277  Sum_probs=17.4

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q 028251            9 YIIIGDTGVGKSCLLLQFT   27 (211)
Q Consensus         9 i~vvG~~~~GKSsli~~l~   27 (211)
                      |+|.|++||||||+++.|.
T Consensus         4 I~i~G~~GsGKsT~~~~L~   22 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAM   22 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            7888999999999999885

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.81  E-value=0.00046  Score=47.87  Aligned_cols=25  Identities=24%  Similarity=0.126  Sum_probs=21.6

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHh
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ..++-|+|-|++|||||||.++|..
T Consensus        20 ~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          20 AGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3567799999999999999999863

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.81  E-value=0.00035  Score=49.55  Aligned_cols=22  Identities=32%  Similarity=0.567  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      -|+|+||+||||+||+++|+..
T Consensus         4 livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           4 LYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            3789999999999999999854

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.80  E-value=0.00021  Score=51.43  Aligned_cols=23  Identities=30%  Similarity=0.557  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      -++++|++|||||||++.+.+-.
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            37899999999999999999754

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.79  E-value=0.00035  Score=47.44  Aligned_cols=21  Identities=33%  Similarity=0.482  Sum_probs=18.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHHh
Q 028251            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~   28 (211)
                      +|+++|++||||||+.+.|..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988853

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.79  E-value=0.00037  Score=47.32  Aligned_cols=23  Identities=26%  Similarity=0.582  Sum_probs=19.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .-++|+|++||||||+.+.|...
T Consensus         7 ~iivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           7 HIYVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            34677999999999999998743

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.78  E-value=0.0004  Score=50.83  Aligned_cols=26  Identities=19%  Similarity=0.335  Sum_probs=21.8

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCC
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .+.-|++.||||+|||||.+.+...-
T Consensus        31 ~P~~ilL~GpPGtGKT~la~~la~~~   56 (273)
T d1gvnb_          31 SPTAFLLGGQPGSGKTSLRSAIFEET   56 (273)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            34559999999999999999997643

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.77  E-value=0.00041  Score=47.26  Aligned_cols=21  Identities=24%  Similarity=0.466  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 028251            9 YIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         9 i~vvG~~~~GKSsli~~l~~~   29 (211)
                      |+|.|++||||||+.+.|...
T Consensus         7 I~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            778999999999999988743

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.76  E-value=0.00034  Score=50.74  Aligned_cols=23  Identities=35%  Similarity=0.456  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      -++++|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHcCCc
Confidence            47899999999999999998653

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.70  E-value=0.00041  Score=50.81  Aligned_cols=22  Identities=41%  Similarity=0.498  Sum_probs=20.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q 028251            9 YIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         9 i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      ++++|++|+|||||++.+.+..
T Consensus        33 ~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          33 TLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCcHHHHHHHHHCCC
Confidence            6899999999999999999763

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.70  E-value=0.00053  Score=46.71  Aligned_cols=22  Identities=18%  Similarity=0.301  Sum_probs=19.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHH
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFT   27 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~   27 (211)
                      -+-|.++|.+||||||+.+.|.
T Consensus         6 g~~I~l~G~~GsGKTTia~~La   27 (183)
T d1m8pa3           6 GFTIFLTGYMNSGKDAIARALQ   27 (183)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3678899999999999998886

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.69  E-value=0.00046  Score=47.55  Aligned_cols=20  Identities=40%  Similarity=0.521  Sum_probs=17.1

Q ss_pred             eEE-EEcCCCCCHHHHHHHHH
Q 028251            8 KYI-IIGDTGVGKSCLLLQFT   27 (211)
Q Consensus         8 ~i~-vvG~~~~GKSsli~~l~   27 (211)
                      ||+ |.|.+||||||+++.|.
T Consensus         2 kiivi~G~~GsGKTT~~~~La   22 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVK   22 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            554 57999999999999985

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.65  E-value=0.00055  Score=46.49  Aligned_cols=21  Identities=24%  Similarity=0.363  Sum_probs=18.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 028251            9 YIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         9 i~vvG~~~~GKSsli~~l~~~   29 (211)
                      |+|.|++||||||+.+.|...
T Consensus         6 I~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            566699999999999999754

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.62  E-value=0.00052  Score=50.37  Aligned_cols=22  Identities=36%  Similarity=0.392  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .++|+|++|||||||++.+.+-
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl   51 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFL   51 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            4789999999999999999864

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.62  E-value=0.00029  Score=51.61  Aligned_cols=21  Identities=29%  Similarity=0.401  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHHh
Q 028251            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~   28 (211)
                      +++|+|++|+|||||++.+.+
T Consensus        46 ~vaivG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTT
T ss_pred             EEEEECCCCCcHHHHHHHHHh
Confidence            689999999999999987764

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.59  E-value=0.00095  Score=50.60  Aligned_cols=23  Identities=26%  Similarity=0.417  Sum_probs=20.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      -+|+|.|++|+|||||++.|+..
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~  189 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEF  189 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGG
T ss_pred             CCEEEEeeccccchHHHHHHhhh
Confidence            46999999999999999999854

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.57  E-value=0.00062  Score=47.52  Aligned_cols=22  Identities=18%  Similarity=0.315  Sum_probs=19.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHh
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      --|+|+|+|||||||+..+|..
T Consensus         9 ~iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_           9 KIIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3478999999999999999964

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.56  E-value=0.00066  Score=48.92  Aligned_cols=25  Identities=24%  Similarity=0.428  Sum_probs=21.5

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhC
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      ....+++.||||+||||+++.+...
T Consensus        34 ~~~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          34 PLEHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999998754

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.52  E-value=0.00071  Score=46.18  Aligned_cols=20  Identities=15%  Similarity=0.396  Sum_probs=17.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHH
Q 028251            8 KYIIIGDTGVGKSCLLLQFT   27 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~   27 (211)
                      .|+++|++||||||+.+.|.
T Consensus         4 ~Iil~G~~GsGKSTia~~LA   23 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELA   23 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHH
Confidence            37789999999999999885

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.51  E-value=0.00032  Score=50.89  Aligned_cols=23  Identities=22%  Similarity=0.508  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .++++|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            47999999999999999998653

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.49  E-value=0.00076  Score=48.53  Aligned_cols=24  Identities=25%  Similarity=0.436  Sum_probs=20.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhC
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      ...+++.||||+|||++++.+...
T Consensus        35 ~~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          35 LDHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHhc
Confidence            346899999999999999998754

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.45  E-value=0.00099  Score=47.09  Aligned_cols=23  Identities=26%  Similarity=0.320  Sum_probs=20.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHh
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ++-|+|-|++|||||||.+.|..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            57799999999999999998854

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.45  E-value=0.00092  Score=46.73  Aligned_cols=24  Identities=25%  Similarity=0.501  Sum_probs=20.7

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHh
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ..-+++++|++|+|||+++..|..
T Consensus        42 ~k~n~lLvG~pGVGKTalv~~LA~   65 (195)
T d1jbka_          42 TKNNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCCeEEEecCCcccHHHHHHHHH
Confidence            456899999999999999988764

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.33  E-value=0.0011  Score=48.81  Aligned_cols=24  Identities=21%  Similarity=0.379  Sum_probs=20.6

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHh
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ..-++++||++|+|||++++.|..
T Consensus        38 ~k~n~lLVG~~GvGKTalv~~la~   61 (268)
T d1r6bx2          38 RKNNPLLVGESGVGKTAIAEGLAW   61 (268)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ccCCcEEECCCCCcHHHHHHHHHH
Confidence            446899999999999999988764

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.32  E-value=0.0012  Score=46.85  Aligned_cols=24  Identities=21%  Similarity=0.195  Sum_probs=20.6

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHh
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      +.+.|+|-||+||||||..+.|..
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            357889999999999999998863

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.00055  Score=47.43  Aligned_cols=23  Identities=17%  Similarity=0.330  Sum_probs=19.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHh
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ...|.++|.+||||||+.+.|..
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35678999999999999999863

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.21  E-value=0.0013  Score=49.44  Aligned_cols=23  Identities=30%  Similarity=0.504  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      -.++++||+|+|||.|.+++...
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhhc
Confidence            45899999999999999999753

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.21  E-value=0.002  Score=44.55  Aligned_cols=26  Identities=23%  Similarity=0.175  Sum_probs=22.1

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhCC
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      +++-|+|.|.+||||||+.+.|....
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~~g   27 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRSWG   27 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHCC
Confidence            46789999999999999999887543

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.17  E-value=0.0014  Score=45.53  Aligned_cols=26  Identities=31%  Similarity=0.491  Sum_probs=22.2

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHhC
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      ..++-|+|-|..||||||+++.|...
T Consensus         7 ~kp~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1           7 TQPFTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHH
Confidence            45678999999999999999988743

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.16  E-value=0.0016  Score=47.30  Aligned_cols=23  Identities=17%  Similarity=0.378  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      ..|++.||+|+|||+|++.+...
T Consensus        41 ~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHhhc
Confidence            46999999999999999999753

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.12  E-value=0.0018  Score=46.22  Aligned_cols=22  Identities=27%  Similarity=0.460  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHh
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ..+++.||+|+|||++++.+..
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            4689999999999999998875

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.09  E-value=0.0018  Score=46.80  Aligned_cols=23  Identities=17%  Similarity=0.323  Sum_probs=20.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      ..+++.||+|+||||+++.+...
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999854

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.02  E-value=0.002  Score=46.69  Aligned_cols=24  Identities=21%  Similarity=0.378  Sum_probs=20.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhC
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .-.++|.|++|+|||++++.+...
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            347999999999999999998754

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.01  E-value=0.0018  Score=47.13  Aligned_cols=21  Identities=19%  Similarity=0.259  Sum_probs=18.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHHh
Q 028251            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~   28 (211)
                      -|+|.|++|+|||||++++..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            477899999999999999874

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.92  E-value=0.002  Score=46.47  Aligned_cols=25  Identities=20%  Similarity=0.371  Sum_probs=21.2

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhC
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      ....+++.||+|+||||+++.+...
T Consensus        32 ~~~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          32 DLPHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHh
Confidence            3456899999999999999998754

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.85  E-value=0.0021  Score=50.75  Aligned_cols=21  Identities=33%  Similarity=0.577  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHH
Q 028251            7 FKYIIIGDTGVGKSCLLLQFT   27 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~   27 (211)
                      -+|+++||+|||||-|.++|.
T Consensus        50 sNILliGPTGvGKTlLAr~LA   70 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLA   70 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHH
T ss_pred             ccEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999995

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=95.80  E-value=0.0028  Score=46.04  Aligned_cols=23  Identities=26%  Similarity=0.459  Sum_probs=20.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      -.|++.||+|+|||+|++.+...
T Consensus        43 ~giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHHH
Confidence            35999999999999999999853

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=95.80  E-value=0.0028  Score=44.66  Aligned_cols=22  Identities=27%  Similarity=0.339  Sum_probs=18.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHh
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      +-|+|.||+||||+|+...|..
T Consensus         4 piI~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           4 PVITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3578889999999999988863

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.74  E-value=0.003  Score=44.87  Aligned_cols=23  Identities=26%  Similarity=0.410  Sum_probs=19.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHh
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ...+++.||+|+||||+++.+..
T Consensus        36 ~~~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          36 MPHMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCchhhHHHHHH
Confidence            34689999999999999988763

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.71  E-value=0.0018  Score=47.36  Aligned_cols=21  Identities=33%  Similarity=0.499  Sum_probs=17.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 028251            9 YIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         9 i~vvG~~~~GKSsli~~l~~~   29 (211)
                      +++.|++|+|||++++.+...
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            455699999999999998743

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.71  E-value=0.003  Score=45.01  Aligned_cols=23  Identities=26%  Similarity=0.511  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      ..+++.||+|+||||+++.+...
T Consensus        34 ~~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          34 PHMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChHHHHHHHHHH
Confidence            45899999999999999998743

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.64  E-value=0.0028  Score=44.74  Aligned_cols=25  Identities=20%  Similarity=0.271  Sum_probs=21.4

Q ss_pred             CceeeEEEEcCCCCCHHHHHHHHHh
Q 028251            4 DYLFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         4 ~~~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ....-|.+.|.+|||||||.+.|..
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3556799999999999999999863

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=95.63  E-value=0.0035  Score=45.76  Aligned_cols=23  Identities=22%  Similarity=0.417  Sum_probs=20.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      -.+++.||+|+|||++++.+...
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEeeCCCCCCccHHHHHHHHH
Confidence            34899999999999999999843

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.62  E-value=0.0035  Score=45.74  Aligned_cols=23  Identities=17%  Similarity=0.372  Sum_probs=20.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      -.|++.||+|+|||++++.+...
T Consensus        39 ~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceeEEecCCCCCchHHHHHHHHH
Confidence            46999999999999999999864

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.58  E-value=0.0037  Score=44.40  Aligned_cols=23  Identities=17%  Similarity=0.443  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      ..+++.||+|+||||+++.+...
T Consensus        36 ~~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          36 PHLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChhHHHHHHHHH
Confidence            46899999999999999999753

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.49  E-value=0.0045  Score=43.19  Aligned_cols=21  Identities=29%  Similarity=0.403  Sum_probs=18.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHHh
Q 028251            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~   28 (211)
                      -|+|-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988763

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.30  E-value=0.0046  Score=45.31  Aligned_cols=24  Identities=21%  Similarity=0.325  Sum_probs=21.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      -.|++.|++|+|||+|++.+...-
T Consensus        42 ~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          42 KGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCcchhHHHHHHHHh
Confidence            469999999999999999998554

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.22  E-value=0.01  Score=41.53  Aligned_cols=22  Identities=32%  Similarity=0.505  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHh
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      +-|+|.|..||||||+.+.|..
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            6689999999999999988864

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=95.19  E-value=0.0061  Score=45.61  Aligned_cols=23  Identities=26%  Similarity=0.277  Sum_probs=20.6

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHH
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFT   27 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~   27 (211)
                      .++-|+|.|++|||||||.+.|.
T Consensus        79 ~P~iIGIaG~sgSGKSTla~~L~  101 (308)
T d1sq5a_          79 IPYIISIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCCCcHHHHHHH
Confidence            46789999999999999988875

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.13  E-value=0.0041  Score=48.14  Aligned_cols=23  Identities=26%  Similarity=0.509  Sum_probs=18.7

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHH
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFT   27 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~   27 (211)
                      ..-++++||++|||||+++..|.
T Consensus        42 ~k~n~llvG~~GvGKtaiv~~la   64 (387)
T d1qvra2          42 TKNNPVLIGEPGVGKTAIVEGLA   64 (387)
T ss_dssp             SCCCCEEEECTTSCHHHHHHHHH
T ss_pred             CCCCCeEECCCCCCHHHHHHHHH
Confidence            34578999999999999986554

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.08  E-value=0.0058  Score=46.90  Aligned_cols=23  Identities=26%  Similarity=0.460  Sum_probs=20.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHh
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      .-+++++||+|||||-|.++|..
T Consensus        68 ~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          68 KSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CcceeeeCCCCccHHHHHHHHHh
Confidence            35699999999999999999864

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.07  E-value=0.0098  Score=41.69  Aligned_cols=25  Identities=28%  Similarity=0.456  Sum_probs=20.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRF   31 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~   31 (211)
                      +-|+|.|..||||||+.+.|....+
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~G~   28 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADLGI   28 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             EEEEEECCCcCCHHHHHHHHHHCCC
Confidence            4588999999999999998875543

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.97  E-value=0.0072  Score=42.36  Aligned_cols=20  Identities=25%  Similarity=0.312  Sum_probs=17.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 028251            9 YIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         9 i~vvG~~~~GKSsli~~l~~   28 (211)
                      |+|-|..||||||+++.|..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77889999999999998863

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=94.95  E-value=0.01  Score=40.58  Aligned_cols=25  Identities=36%  Similarity=0.607  Sum_probs=21.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRF   31 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~   31 (211)
                      .-|++.|++|+||||+.-.|.....
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~g~   39 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQRGH   39 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            4589999999999999999886643

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=94.90  E-value=0.0014  Score=45.43  Aligned_cols=18  Identities=33%  Similarity=0.610  Sum_probs=16.3

Q ss_pred             EEEcCCCCCHHHHHHHHH
Q 028251           10 IIIGDTGVGKSCLLLQFT   27 (211)
Q Consensus        10 ~vvG~~~~GKSsli~~l~   27 (211)
                      +|+|+.|+|||||+.+|.
T Consensus        28 vi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            578999999999999985

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.87  E-value=0.0084  Score=41.61  Aligned_cols=24  Identities=13%  Similarity=0.088  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRF   31 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~   31 (211)
                      -+.|.|++|+|||+|...|..+..
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~~~   48 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVTCQ   48 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHH
Confidence            368999999999999999986543

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=94.73  E-value=0.011  Score=40.32  Aligned_cols=24  Identities=29%  Similarity=0.538  Sum_probs=20.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      .-|++.|++|+||||+...|....
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~G   39 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINKN   39 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcC
Confidence            458999999999999999998654

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.72  E-value=0.013  Score=43.25  Aligned_cols=23  Identities=26%  Similarity=0.281  Sum_probs=19.8

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHH
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFT   27 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~   27 (211)
                      .++-|+|-|++|||||||...|.
T Consensus        26 ~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          26 CPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCEEEEeECCCCCCHHHHHHHHH
Confidence            46789999999999999987763

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.64  E-value=0.0099  Score=41.79  Aligned_cols=31  Identities=10%  Similarity=0.013  Sum_probs=21.1

Q ss_pred             cEEEEeCCCCCCHHHHHHHHHHHHHHHHhhccc
Q 028251          144 LFLEASARTAQNVEEAFIKTAAKILQNIQEGAL  176 (211)
Q Consensus       144 ~~~~~s~~~~~~i~~~~~~i~~~~~~~~~~~~~  176 (211)
                      .++.+++.  ..++++.+.|.+.+.+.......
T Consensus       171 ~~~~IDa~--~~~e~V~~~I~~~v~~~l~~~~~  201 (209)
T d1nn5a_         171 NWKMVDAS--KSIEAVHEDIRVLSEDAIATATE  201 (209)
T ss_dssp             CEEEEETT--SCHHHHHHHHHHHHHHHHHHGGG
T ss_pred             CEEEEECC--CCHHHHHHHHHHHHHHHHHhccc
Confidence            46777764  37889988877777666664433

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=94.55  E-value=0.0044  Score=46.84  Aligned_cols=22  Identities=27%  Similarity=0.443  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHh
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ..|++.|++|+|||+|++++..
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHH
T ss_pred             CeEEEECCCCccHHHHHHHHHH
Confidence            4699999999999999999863

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.52  E-value=0.0057  Score=45.34  Aligned_cols=19  Identities=32%  Similarity=0.511  Sum_probs=17.0

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q 028251            9 YIIIGDTGVGKSCLLLQFT   27 (211)
Q Consensus         9 i~vvG~~~~GKSsli~~l~   27 (211)
                      .+++|+.|+|||++++++.
T Consensus        27 nvlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          27 TAIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             EEEECCTTTCSTHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            4789999999999999884

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.44  E-value=0.0059  Score=43.51  Aligned_cols=22  Identities=27%  Similarity=0.336  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      .|+|-|+.||||||+++.|...
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~~   25 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQL   25 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999987643

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.38  E-value=0.012  Score=41.81  Aligned_cols=23  Identities=22%  Similarity=0.161  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      -+.|.|++|+|||+|...+....
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~~   58 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVTC   58 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            47899999999999999987554

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=94.35  E-value=0.012  Score=44.98  Aligned_cols=22  Identities=18%  Similarity=0.312  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHh
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      --+++.||||+|||+|.+.+..
T Consensus       155 ~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         155 RYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999874

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=94.28  E-value=0.017  Score=39.13  Aligned_cols=25  Identities=32%  Similarity=0.565  Sum_probs=21.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhCCC
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTDKRF   31 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~~~~   31 (211)
                      .-|++.|++|+||||+.-.|.....
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~g~   40 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKRGH   40 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            4689999999999999999886643

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.21  E-value=0.014  Score=43.72  Aligned_cols=21  Identities=33%  Similarity=0.697  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHHh
Q 028251            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~   28 (211)
                      .++++||+|+|||.|.+.|..
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHHh
Confidence            588999999999999999874

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.21  E-value=0.013  Score=41.77  Aligned_cols=24  Identities=21%  Similarity=0.191  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKRF   31 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~~   31 (211)
                      -++|.|++|+|||+|...+..+..
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~~~   61 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVMVQ   61 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhh
Confidence            478999999999999998876543

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.94  E-value=0.018  Score=42.21  Aligned_cols=24  Identities=33%  Similarity=0.418  Sum_probs=20.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHhC
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      ..-|.|.|..|+|||||...+...
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            346789999999999999998754

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.87  E-value=0.015  Score=44.76  Aligned_cols=19  Identities=37%  Similarity=0.534  Sum_probs=17.0

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q 028251            9 YIIIGDTGVGKSCLLLQFT   27 (211)
Q Consensus         9 i~vvG~~~~GKSsli~~l~   27 (211)
                      .+|+|+.|+|||+++.++.
T Consensus        28 ~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          28 TSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3688999999999999984

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.86  E-value=0.018  Score=40.96  Aligned_cols=22  Identities=32%  Similarity=0.599  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      -++|.|++|+|||+|...+..+
T Consensus        28 l~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          28 IILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4789999999999999998755

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=93.84  E-value=0.017  Score=44.75  Aligned_cols=21  Identities=33%  Similarity=0.449  Sum_probs=19.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 028251            9 YIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         9 i~vvG~~~~GKSsli~~l~~~   29 (211)
                      |+|.|++|+||||.+..++..
T Consensus       161 iLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         161 ILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEcCCCCCccHHHHHHhhh
Confidence            899999999999999999864

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=93.71  E-value=0.0089  Score=44.18  Aligned_cols=22  Identities=23%  Similarity=0.315  Sum_probs=16.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHH
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFT   27 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~   27 (211)
                      .+-|+|.|++||||||+.++|.
T Consensus         4 ~pIIgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           4 HPIISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             SCEEEEESCC---CCTHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHH
Confidence            3469999999999999999875

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.67  E-value=0.02  Score=40.70  Aligned_cols=22  Identities=32%  Similarity=0.471  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      -|+|=|..||||||+++.|...
T Consensus         4 ~IviEG~~GsGKST~~~~L~~~   25 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4788999999999999999753

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=93.58  E-value=0.021  Score=42.76  Aligned_cols=21  Identities=24%  Similarity=0.412  Sum_probs=17.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 028251            9 YIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         9 i~vvG~~~~GKSsli~~l~~~   29 (211)
                      +++.|+||+|||.|.+.|...
T Consensus       126 ~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHH
Confidence            344699999999999999753

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=93.49  E-value=0.022  Score=40.31  Aligned_cols=23  Identities=22%  Similarity=0.128  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      -++|.|++|+|||+|...+..+.
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            47899999999999999997543

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.33  E-value=0.026  Score=39.67  Aligned_cols=21  Identities=33%  Similarity=0.532  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 028251            9 YIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         9 i~vvG~~~~GKSsli~~l~~~   29 (211)
                      +.+.|++|+|||-|++++...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999999754

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.29  E-value=0.024  Score=39.85  Aligned_cols=20  Identities=20%  Similarity=0.142  Sum_probs=18.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 028251            9 YIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         9 i~vvG~~~~GKSsli~~l~~   28 (211)
                      |++=|..||||||+++.|..
T Consensus         6 I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78999999999999998864

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.28  E-value=0.027  Score=40.04  Aligned_cols=23  Identities=17%  Similarity=0.098  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      -++|.|++|+|||+|...+..+.
T Consensus        39 ~~~i~G~~GsGKT~lalq~~~~~   61 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLCVTA   61 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999998543

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.27  E-value=0.028  Score=39.29  Aligned_cols=21  Identities=19%  Similarity=0.433  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHHh
Q 028251            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~   28 (211)
                      -+++.|++|+|||++++.+..
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            489999999999999998764

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.24  E-value=0.027  Score=40.19  Aligned_cols=21  Identities=29%  Similarity=0.605  Sum_probs=18.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHHh
Q 028251            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~   28 (211)
                      .+++.|++|+|||++++.+..
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            378999999999999998753

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=92.93  E-value=0.038  Score=41.60  Aligned_cols=25  Identities=20%  Similarity=0.231  Sum_probs=22.3

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhC
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      ..++|.|=|.-|+||||+++.|...
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHH
Confidence            5689999999999999999998853

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=92.68  E-value=0.034  Score=38.94  Aligned_cols=20  Identities=30%  Similarity=0.632  Sum_probs=17.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHH
Q 028251            8 KYIIIGDTGVGKSCLLLQFT   27 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~   27 (211)
                      -+.|.|++|+|||+|...+.
T Consensus        28 ~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            46889999999999987765

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=92.60  E-value=0.03  Score=42.19  Aligned_cols=25  Identities=20%  Similarity=0.377  Sum_probs=22.3

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHhC
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      ..++|.|=|.-|+||||+++.|...
T Consensus         4 ~~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           4 GVLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHH
Confidence            4688999999999999999999854

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=92.58  E-value=0.043  Score=41.23  Aligned_cols=24  Identities=25%  Similarity=0.358  Sum_probs=21.1

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHh
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ..++|.|=|.-|+||||+++.|..
T Consensus         3 ~~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           3 TLLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC
T ss_pred             CceEEEEECCcCCCHHHHHHHHHH
Confidence            457899999999999999998863

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=92.47  E-value=0.038  Score=39.19  Aligned_cols=21  Identities=14%  Similarity=0.044  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHHh
Q 028251            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~   28 (211)
                      -|+|.|..||||||+.+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999998864

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=92.43  E-value=0.03  Score=38.89  Aligned_cols=23  Identities=22%  Similarity=0.303  Sum_probs=19.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHh
Q 028251            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      .=-+++.||+++|||.|+..|..
T Consensus        53 kn~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          53 KNCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             CSEEEEESCGGGCHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHH
Confidence            34588999999999999998873

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=92.20  E-value=0.044  Score=39.72  Aligned_cols=20  Identities=25%  Similarity=0.406  Sum_probs=17.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 028251            9 YIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         9 i~vvG~~~~GKSsli~~l~~   28 (211)
                      ++|.|++|+|||+|+..+..
T Consensus        38 ~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            67999999999999888764

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=92.14  E-value=0.04  Score=42.70  Aligned_cols=22  Identities=36%  Similarity=0.534  Sum_probs=18.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHh
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      -+++|+|.+|+|||++++.++.
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHH
Confidence            3589999999999999887753

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=91.99  E-value=0.031  Score=40.98  Aligned_cols=17  Identities=18%  Similarity=0.454  Sum_probs=13.9

Q ss_pred             EEEEcCCCCCHHHH-HHH
Q 028251            9 YIIIGDTGVGKSCL-LLQ   25 (211)
Q Consensus         9 i~vvG~~~~GKSsl-i~~   25 (211)
                      ++|+|++|+||||. +++
T Consensus        17 ~lI~g~aGTGKTt~l~~r   34 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVITNK   34 (306)
T ss_dssp             EEECCCTTSCHHHHHHHH
T ss_pred             EEEEeeCCccHHHHHHHH
Confidence            68999999999975 444

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.45  E-value=1.3  Score=30.31  Aligned_cols=76  Identities=16%  Similarity=0.125  Sum_probs=49.0

Q ss_pred             EEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEE-EEEecCCCCCCCCCCHHH
Q 028251           55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIM-LVGNKCDLAHRRAVSKEE  133 (211)
Q Consensus        55 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~~~~~  133 (211)
                      +.+.++|+++...  ......+..+|.++++...+ ..+..........+.+   .+.|++ ++.|+.+..+. ....+.
T Consensus       112 ~d~IiiD~~~~~~--~~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~---~~~~~~giv~N~~~~~~~-~~~~~~  184 (237)
T d1g3qa_         112 FDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKK---AGLAILGFVLNRYGRSDR-DIPPEA  184 (237)
T ss_dssp             CSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHH---TTCEEEEEEEEEETSCTT-CCCHHH
T ss_pred             CCEEEEccccccc--ccchhhhhhhhccccccccc-ceecchhhHHHHHHhh---hhhhhhhhhhcccccccc-hhhhHH
Confidence            4688999998653  33445577899999998874 4455555555555543   366765 88999986543 344444


Q ss_pred             HHHH
Q 028251          134 GEQF  137 (211)
Q Consensus       134 ~~~~  137 (211)
                      .+.+
T Consensus       185 ~~~~  188 (237)
T d1g3qa_         185 AEDV  188 (237)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            4444

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=91.36  E-value=0.045  Score=40.46  Aligned_cols=15  Identities=33%  Similarity=0.689  Sum_probs=13.1

Q ss_pred             EEEEcCCCCCHHHHH
Q 028251            9 YIIIGDTGVGKSCLL   23 (211)
Q Consensus         9 i~vvG~~~~GKSsli   23 (211)
                      ++|.|++|+||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            789999999999754

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=91.34  E-value=0.059  Score=38.87  Aligned_cols=19  Identities=37%  Similarity=0.520  Sum_probs=16.9

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q 028251            9 YIIIGDTGVGKSCLLLQFT   27 (211)
Q Consensus         9 i~vvG~~~~GKSsli~~l~   27 (211)
                      ++|.|++|+|||+|+-.|.
T Consensus        32 ~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            5689999999999998875

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=91.23  E-value=0.069  Score=39.24  Aligned_cols=22  Identities=23%  Similarity=0.419  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      |++|+|++|+|||+|+..+..+
T Consensus        45 r~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          45 RGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHH
T ss_pred             eeeEeCCCCCCHHHHHHHHHHH
Confidence            7899999999999999888743

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=91.16  E-value=0.054  Score=40.40  Aligned_cols=21  Identities=33%  Similarity=0.659  Sum_probs=18.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHHh
Q 028251            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~   28 (211)
                      .++++||+|+|||.+.+.|..
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHH
Confidence            568889999999999998763

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=90.10  E-value=0.098  Score=37.98  Aligned_cols=24  Identities=13%  Similarity=0.134  Sum_probs=20.6

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHh
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      ..--+.+.|+++.|||+|++.+..
T Consensus       103 k~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         103 KRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccEEEEEEcCCCCCHHHHHHHHHH
Confidence            445678999999999999999874

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=89.41  E-value=0.11  Score=39.34  Aligned_cols=19  Identities=26%  Similarity=0.497  Sum_probs=15.7

Q ss_pred             eEEEEcCCCCCHHHHHHHH
Q 028251            8 KYIIIGDTGVGKSCLLLQF   26 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l   26 (211)
                      -.+|.|++|+|||+++..+
T Consensus       165 ~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             EEEEECCTTSTHHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHHH
Confidence            4678999999999987553

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.95  E-value=0.13  Score=36.49  Aligned_cols=19  Identities=37%  Similarity=0.356  Sum_probs=17.2

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q 028251            9 YIIIGDTGVGKSCLLLQFT   27 (211)
Q Consensus         9 i~vvG~~~~GKSsli~~l~   27 (211)
                      ++|.|+..+|||++++.+.
T Consensus        44 ~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHH
Confidence            6889999999999999874

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=88.61  E-value=0.14  Score=36.07  Aligned_cols=19  Identities=37%  Similarity=0.431  Sum_probs=17.2

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q 028251            9 YIIIGDTGVGKSCLLLQFT   27 (211)
Q Consensus         9 i~vvG~~~~GKSsli~~l~   27 (211)
                      ++|.|+..+|||++++.+.
T Consensus        38 ~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhH
Confidence            6899999999999999864

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=87.82  E-value=0.17  Score=36.50  Aligned_cols=22  Identities=32%  Similarity=0.329  Sum_probs=18.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      -+.+.|++++|||+|.-.+...
T Consensus        56 itei~G~~gsGKTtl~l~~~~~   77 (263)
T d1u94a1          56 IVEIYGPESSGKTTLTLQVIAA   77 (263)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEecCCCcHHHHHHHHHHHH
Confidence            3678999999999998887644

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.48  E-value=0.2  Score=36.42  Aligned_cols=22  Identities=32%  Similarity=0.699  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      |++++|++|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHH
Confidence            6899999999999998888643

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=86.45  E-value=0.22  Score=35.52  Aligned_cols=22  Identities=27%  Similarity=0.493  Sum_probs=19.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHh
Q 028251            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      .-|+|.|++|+||+.+.+.+-.
T Consensus        24 ~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          24 CPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             SCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEECCCCcCHHHHHHHHHH
Confidence            4589999999999999988864

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.39  E-value=0.29  Score=30.78  Aligned_cols=24  Identities=13%  Similarity=0.144  Sum_probs=21.0

Q ss_pred             ceeeEEEEcCCCCCHHHHHHHHHh
Q 028251            5 YLFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         5 ~~~~i~vvG~~~~GKSsli~~l~~   28 (211)
                      .-+.|.+-|..|+||+++.+.|..
T Consensus         5 qgf~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           5 QGFSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHH
T ss_pred             cceEEEEeCCCCCCHHHHHHHHHH
Confidence            457899999999999999999863

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=85.81  E-value=0.25  Score=31.94  Aligned_cols=18  Identities=28%  Similarity=0.449  Sum_probs=14.3

Q ss_pred             EEEcCCCCCHHH-HHHHHH
Q 028251           10 IIIGDTGVGKSC-LLLQFT   27 (211)
Q Consensus        10 ~vvG~~~~GKSs-li~~l~   27 (211)
                      +++||-.||||| |++++.
T Consensus         6 ~i~GpMfsGKTteLi~~~~   24 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRLH   24 (139)
T ss_dssp             EEECSTTSCHHHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHHHH
Confidence            568999999999 666653

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=83.54  E-value=0.26  Score=33.39  Aligned_cols=21  Identities=19%  Similarity=0.249  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 028251            9 YIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         9 i~vvG~~~~GKSsli~~l~~~   29 (211)
                      |+|+|...+|||.+..++...
T Consensus         2 iLVtGGarSGKS~~AE~l~~~   22 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCccHHHHHHHHHhc
Confidence            689999999999999998743

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=83.20  E-value=0.39  Score=34.26  Aligned_cols=88  Identities=15%  Similarity=0.092  Sum_probs=52.3

Q ss_pred             EEEEEEeCCCccchhh-chHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCe-EEEEEecCCCCCCCCCCH
Q 028251           55 IKLQIWDTAGQESFRS-ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMS-IMLVGNKCDLAHRRAVSK  131 (211)
Q Consensus        55 ~~l~l~D~~G~~~~~~-~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p-~ivv~nK~Dl~~~~~~~~  131 (211)
                      +.+.+.|+|+.-.... ........+|.++++.+. +..++.........+..... .+.+ .-++.|+.+...    ..
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~----~~  190 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVAN----EY  190 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSC----CH
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhccccceeccceEEeeecCCC----cc
Confidence            4578999987543332 233334568888877776 45556655555555554432 2333 347789987644    23


Q ss_pred             HHHHHHHHHcCCcEEE
Q 028251          132 EEGEQFAKENGLLFLE  147 (211)
Q Consensus       132 ~~~~~~~~~~~~~~~~  147 (211)
                      +..+++.+..+.+++.
T Consensus       191 ~~~~~~~~~~~~~~~~  206 (269)
T d1cp2a_         191 ELLDAFAKELGSQLIH  206 (269)
T ss_dssp             HHHHHHHHHHTCCEEE
T ss_pred             chhhhhHhhcCCeEEE
Confidence            5566677777776543

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=82.70  E-value=0.32  Score=35.47  Aligned_cols=21  Identities=29%  Similarity=0.493  Sum_probs=18.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHHh
Q 028251            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~   28 (211)
                      |++++|++|+|||+|+..+..
T Consensus        70 r~~If~~~g~GKt~ll~~~~~   90 (285)
T d2jdia3          70 RELIIGDRQTGKTSIAIDTII   90 (285)
T ss_dssp             BCEEEESTTSSHHHHHHHHHH
T ss_pred             EEEeecCCCCChHHHHHHHHH
Confidence            689999999999999876653

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=80.97  E-value=0.51  Score=34.01  Aligned_cols=22  Identities=27%  Similarity=0.291  Sum_probs=18.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~   29 (211)
                      -+.+.|++++|||+|...+...
T Consensus        59 itei~G~~~sGKT~l~l~~~~~   80 (268)
T d1xp8a1          59 ITEIYGPESGGKTTLALAIVAQ   80 (268)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEecCCccchHHHHHHHHHH
Confidence            3678999999999999888743

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=80.91  E-value=0.46  Score=34.43  Aligned_cols=23  Identities=26%  Similarity=0.413  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhCC
Q 028251            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~~~   30 (211)
                      |++|+|++|+|||+|+..+....
T Consensus        69 r~~Ifg~~g~GKt~l~~~~~~~~   91 (276)
T d1fx0a3          69 RELIIGDRQTGKTAVATDTILNQ   91 (276)
T ss_dssp             BCBEEESSSSSHHHHHHHHHHTC
T ss_pred             eEeeccCCCCChHHHHHHHHhhh
Confidence            67899999999999987765443

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=80.14  E-value=1.6  Score=29.04  Aligned_cols=24  Identities=13%  Similarity=0.229  Sum_probs=16.8

Q ss_pred             ceeeEEEEcC-CCCCHHHHHHHHHhC
Q 028251            5 YLFKYIIIGD-TGVGKSCLLLQFTDK   29 (211)
Q Consensus         5 ~~~~i~vvG~-~~~GKSsli~~l~~~   29 (211)
                      ..+||.|+|. .+.|-+.+. .|..+
T Consensus        23 ~~~kV~I~GA~G~Ig~~l~~-~La~g   47 (175)
T d7mdha1          23 KLVNIAVSGAAGMISNHLLF-KLASG   47 (175)
T ss_dssp             CCEEEEEETTTSHHHHHHHH-HHHHT
T ss_pred             CCcEEEEECCCcHHHHHHHH-HHHcC
Confidence            5789999996 677766554 55443

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.05  E-value=0.59  Score=33.68  Aligned_cols=21  Identities=24%  Similarity=0.278  Sum_probs=17.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHHh
Q 028251            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~vvG~~~~GKSsli~~l~~   28 (211)
                      -+.+.|++++|||+|.-.+..
T Consensus        62 i~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          62 VIEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEecCCCcHHHHHHHHHHH
Confidence            367899999999999877763