BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028252
(211 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3R8J|A Chain A, Crystal Structure Of Human Soul Protein (Orthorhombic
Form)
pdb|3R8J|B Chain B, Crystal Structure Of Human Soul Protein (Orthorhombic
Form)
pdb|3R8K|A Chain A, Crystal Structure Of Human Soul Protein (Hexagonal Form)
pdb|3R8K|B Chain B, Crystal Structure Of Human Soul Protein (Hexagonal Form)
pdb|3R8K|C Chain C, Crystal Structure Of Human Soul Protein (Hexagonal Form)
pdb|3R8K|D Chain D, Crystal Structure Of Human Soul Protein (Hexagonal Form)
Length = 212
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 82/163 (50%), Gaps = 11/163 (6%)
Query: 37 FEIRLYGEAFWASALVQRSSFQNSTKQGFHRLYQYIHGANLNSARFPVTAPVLTSINPTT 96
+EIR YG A W S V+ + ++ + GF +L YI G N + +TAPV + + P +
Sbjct: 41 YEIRHYGPAKWVSTSVESMDWDSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSYVEPGS 100
Query: 97 A--NGSVCYVKIYLTAK---SPPQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVE 151
+ S + +Y+ ++ PP+P E ++ IE + VR F GF+ + K E
Sbjct: 101 GPFSESTITISLYIPSEQQFDPPRP-LESDVFIEDRAEMTVFVRSFDGFS---SAQKNQE 156
Query: 152 ALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRHQAGRLNEVWM 194
L+ +L + + ++K+ YT A YNS R NEVW+
Sbjct: 157 QLL-TLASILREDGKVFDEKVYYT-AGYNSPVKLLNRNNEVWL 197
>pdb|4B0Y|A Chain A, Determination Of X-Ray Structure Of Human Soul By
Molecular Replacement
Length = 227
Score = 70.1 bits (170), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 82/163 (50%), Gaps = 11/163 (6%)
Query: 37 FEIRLYGEAFWASALVQRSSFQNSTKQGFHRLYQYIHGANLNSARFPVTAPVLTSINPTT 96
+EIR YG A W S V+ + ++ + GF +L YI G N + +TAPV + + P +
Sbjct: 60 YEIRHYGPAKWVSTSVESMDWDSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSYVEPGS 119
Query: 97 A--NGSVCYVKIYLTAK---SPPQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVE 151
+ S + +Y+ ++ PP+P E ++ IE + VR F GF+ + K E
Sbjct: 120 GPFSESTITISLYIPSEQQFDPPRP-LESDVFIEDRAEMTVFVRSFDGFS---SAQKNQE 175
Query: 152 ALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRHQAGRLNEVWM 194
L+ +L + + ++K+ YT A YNS R NEVW+
Sbjct: 176 QLL-TLASILREDGKVFDEKVYYT-AGYNSPVKLLNRNNEVWL 216
>pdb|4AYZ|B Chain B, X-Ray Structure Of Human Soul
Length = 208
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 80/163 (49%), Gaps = 11/163 (6%)
Query: 37 FEIRLYGEAFWASALVQRSSFQNSTKQGFHRLYQYIHGANLNSARFPVTAPVLTSINPTT 96
+EIR YG A W S V+ + ++ + GF +L YI G N + TAPV + + P +
Sbjct: 41 YEIRHYGPAKWVSTSVESXDWDSAIQTGFTKLNSYIQGKNEKEXKIKXTAPVTSYVEPGS 100
Query: 97 A--NGSVCYVKIYLTAK---SPPQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVE 151
S + +Y+ ++ PP+P E ++ IE + VR F GF+ + K E
Sbjct: 101 GPFESSTITISLYIPSEQQFDPPRP-LESDVFIEDRAEXTVFVRSFDGFS---SAQKNQE 156
Query: 152 ALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRHQAGRLNEVWM 194
L+ +L + + ++K+ YT A YNS R NEVW+
Sbjct: 157 QLL-TLASILREDGKVFDEKVYYT-AGYNSPVKLLNRNNEVWL 197
>pdb|4AYZ|A Chain A, X-Ray Structure Of Human Soul
Length = 208
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 81/163 (49%), Gaps = 11/163 (6%)
Query: 37 FEIRLYGEAFWASALVQRSSFQNSTKQGFHRLYQYIHGANLNSARFPVTAPVLTSINPTT 96
+EIR YG A W S V+ + ++ + GF +L YI G N + TAPV + + P +
Sbjct: 41 YEIRHYGPAKWVSTSVESXDWDSAIQTGFTKLNSYIQGKNEKEXKIKXTAPVTSYVEPGS 100
Query: 97 A--NGSVCYVKIYLTAK---SPPQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVE 151
+ S + +Y+ ++ PP+P E ++ IE + VR F GF+ + K E
Sbjct: 101 GPFSESTITISLYIPSEQQFDPPRP-LESDVFIEDRAEXTVFVRSFDGFS---SAQKNQE 156
Query: 152 ALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRHQAGRLNEVWM 194
L+ +L + + ++K+ YT A YNS R NEVW+
Sbjct: 157 QLL-TLASILREDGKVFDEKVYYT-AGYNSPVKLLNRNNEVWL 197
>pdb|2HVA|A Chain A, Solution Structure Of The Haem-Binding Protein P22hbp
Length = 192
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 61/152 (40%), Gaps = 11/152 (7%)
Query: 48 ASALVQRSSFQNSTKQGFHRLYQYIHGANLNSARFPVTAPVLTSINPTTANGSVCYVKIY 107
A+ V + ++ ++ +Y+ G N +T PV ++ P +K++
Sbjct: 44 ATVEVTDKPVDEALREAMPKIMKYVGGTNDKGVGMGMTVPVSFAVFPNEDGSLQKKLKVW 103
Query: 108 LTAK-----SPPQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALMNSLNLHFT 162
SPP P+ E +++IE+ + +F G+AK+ + L +L
Sbjct: 104 FRIPNQFQGSPPAPSDE-SVKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLE---- 158
Query: 163 GNTSITEDKLSYTIAQYNSSRHQAGRLNEVWM 194
T T Y A Y+ GR NEVW+
Sbjct: 159 -GTPATYQGDVYYCAGYDPPMKPYGRRNEVWL 189
>pdb|2GOV|A Chain A, Solution Structure Of Murine P22hbp
Length = 195
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 61/152 (40%), Gaps = 11/152 (7%)
Query: 48 ASALVQRSSFQNSTKQGFHRLYQYIHGANLNSARFPVTAPVLTSINPTTANGSVCYVKIY 107
A+ V + ++ ++ +Y+ G N +T PV ++ P +K++
Sbjct: 47 ATVEVTDKPVDEALREAMPKIMKYVGGTNDKGVGMGMTVPVSFAVFPNEDGSLQKKLKVW 106
Query: 108 LTAK-----SPPQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALMNSLNLHFT 162
SPP P+ E +++IE+ + +F G+AK+ + L +L
Sbjct: 107 FRIPNQFQGSPPAPSDE-SVKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLE---- 161
Query: 163 GNTSITEDKLSYTIAQYNSSRHQAGRLNEVWM 194
T T Y A Y+ GR NEVW+
Sbjct: 162 -GTPATYQGDVYYCAGYDPPMKPYGRRNEVWL 192
>pdb|4A1M|A Chain A, Nmr Structure Of Protoporphyrin-Ix Bound Murine P22hbp
Length = 195
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 61/152 (40%), Gaps = 11/152 (7%)
Query: 48 ASALVQRSSFQNSTKQGFHRLYQYIHGANLNSARFPVTAPVLTSINPTTANGSVCYVKIY 107
A+ V + ++ ++ +Y+ G N +T PV ++ P +K++
Sbjct: 47 ATVEVTDKPVDEALREAMPKIMKYVGGTNDKGVGMGMTVPVSFAVFPNEDGSLQKKLKVW 106
Query: 108 LTAK-----SPPQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALMNSLNLHFT 162
SPP P+ E +++IE+ + +F G+AK+ + L +L
Sbjct: 107 FRIPNQFQGSPPAPSDE-SVKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLE---- 161
Query: 163 GNTSITEDKLSYTIAQYNSSRHQAGRLNEVWM 194
T T Y A Y+ GR NEVW+
Sbjct: 162 -GTPATYQGDVYYCAGYDPPMKPYGRRNEVWL 192
>pdb|2J1N|A Chain A, Osmoporin Ompc
pdb|2J1N|B Chain B, Osmoporin Ompc
pdb|2J1N|C Chain C, Osmoporin Ompc
pdb|2J4U|P Chain P, E.Coli Ompc - Camel Lactoferrin Complex
pdb|2J4U|Q Chain Q, E.Coli Ompc - Camel Lactoferrin Complex
pdb|2J4U|R Chain R, E.Coli Ompc - Camel Lactoferrin Complex
pdb|2J4U|U Chain U, E.Coli Ompc - Camel Lactoferrin Complex
pdb|2J4U|V Chain V, E.Coli Ompc - Camel Lactoferrin Complex
pdb|2J4U|W Chain W, E.Coli Ompc - Camel Lactoferrin Complex
pdb|2ZLE|D Chain D, Cryo-Em Structure Of Degp12OMP
pdb|3NB3|D Chain D, The Host Outer Membrane Proteins Ompa And Ompc Are Packed
At Specific Sites In The Shigella Phage Sf6 Virion As
Structural Components
pdb|4A8D|M Chain M, Degp Dodecamer With Bound Omp
Length = 346
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
Query: 147 NKEVEALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRHQAGRLNEVWMNVP----GFNAE 202
NK+V+ + L F G T +T+ Y +Y + A N W V F
Sbjct: 26 NKDVDGDQTYMRLGFKGETQVTDQLTGYGQWEYQIQGNSAENENNSWTRVAFAGLKFQDV 85
Query: 203 GCSNYRRNY 211
G +Y RNY
Sbjct: 86 GSFDYGRNY 94
>pdb|3SOY|A Chain A, Nuclear Transport Factor 2 (Ntf2-Like) Superfamily Protein
From Salmonella Enterica Subsp. Enterica Serovar
Typhimurium Str. Lt2
Length = 145
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 137 FSGFAKDDNINKEVEALMNSLNLHFTGNTSITEDKLSYTIAQYNS--SRHQAGRLNEVWM 194
F G +K L +H GN ++ E +T + ++ ++H GR ++VW
Sbjct: 60 FYGTTXGKTFSKRTLKLDAPPAIHVYGNAAVAEFDWHFTAVRRDNGQTQHTTGRESQVWA 119
Query: 195 NVP 197
+P
Sbjct: 120 KIP 122
>pdb|1NSI|A Chain A, Human Inducible Nitric Oxide Synthase, Zn-Bound, L-Arg
Complex
pdb|1NSI|B Chain B, Human Inducible Nitric Oxide Synthase, Zn-Bound, L-Arg
Complex
pdb|1NSI|C Chain C, Human Inducible Nitric Oxide Synthase, Zn-Bound, L-Arg
Complex
pdb|1NSI|D Chain D, Human Inducible Nitric Oxide Synthase, Zn-Bound, L-Arg
Complex
pdb|2NSI|A Chain A, Human Inducible Nitric Oxide Synthase, Zn-free, Seitu
Complex
pdb|2NSI|B Chain B, Human Inducible Nitric Oxide Synthase, Zn-free, Seitu
Complex
pdb|2NSI|C Chain C, Human Inducible Nitric Oxide Synthase, Zn-free, Seitu
Complex
pdb|2NSI|D Chain D, Human Inducible Nitric Oxide Synthase, Zn-free, Seitu
Complex
Length = 431
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 12/73 (16%)
Query: 140 FAKDDNINKEVEALMNSLNLHFTGNTSITEDKLSYTIAQ-YNSSRHQAGRLNEVWMNVPG 198
A+ + + KE+E TG +T D+L + Q + ++ GR+ W N+
Sbjct: 90 LARVEAVTKEIET---------TGTYQLTGDELIFATKQAWRNAPRCIGRIQ--WSNLQV 138
Query: 199 FNAEGCSNYRRNY 211
F+A CS R +
Sbjct: 139 FDARSCSTAREMF 151
>pdb|3E7G|A Chain A, Structure Of Human Inosox With Inhibitor Ar-C95791
pdb|3E7G|B Chain B, Structure Of Human Inosox With Inhibitor Ar-C95791
pdb|3E7G|C Chain C, Structure Of Human Inosox With Inhibitor Ar-C95791
pdb|3E7G|D Chain D, Structure Of Human Inosox With Inhibitor Ar-C95791
Length = 424
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 12/73 (16%)
Query: 140 FAKDDNINKEVEALMNSLNLHFTGNTSITEDKLSYTIAQ-YNSSRHQAGRLNEVWMNVPG 198
A+ + + KE+E TG +T D+L + Q + ++ GR+ W N+
Sbjct: 82 LARVEAVTKEIET---------TGTYQLTGDELIFATKQAWRNAPRCIGRIQ--WSNLQV 130
Query: 199 FNAEGCSNYRRNY 211
F+A CS R +
Sbjct: 131 FDARSCSTAREMF 143
>pdb|3EJ8|A Chain A, Structure Of Double Mutant Of Human Inos Oxygenase Domain
With Bound Immidazole
pdb|3EJ8|B Chain B, Structure Of Double Mutant Of Human Inos Oxygenase Domain
With Bound Immidazole
pdb|3EJ8|C Chain C, Structure Of Double Mutant Of Human Inos Oxygenase Domain
With Bound Immidazole
pdb|3EJ8|D Chain D, Structure Of Double Mutant Of Human Inos Oxygenase Domain
With Bound Immidazole
Length = 424
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 12/73 (16%)
Query: 140 FAKDDNINKEVEALMNSLNLHFTGNTSITEDKLSYTIAQ-YNSSRHQAGRLNEVWMNVPG 198
A+ + + KE+E TG +T D+L + Q + ++ GR+ W N+
Sbjct: 82 LARVEAVTKEIET---------TGTYQLTGDELIFATKQAWRNAPRCIGRIQ--WSNLQV 130
Query: 199 FNAEGCSNYRRNY 211
F+A CS R +
Sbjct: 131 FDARSCSTAREMF 143
>pdb|4NOS|A Chain A, Human Inducible Nitric Oxide Synthase With Inhibitor
pdb|4NOS|B Chain B, Human Inducible Nitric Oxide Synthase With Inhibitor
pdb|4NOS|C Chain C, Human Inducible Nitric Oxide Synthase With Inhibitor
pdb|4NOS|D Chain D, Human Inducible Nitric Oxide Synthase With Inhibitor
Length = 427
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 12/73 (16%)
Query: 140 FAKDDNINKEVEALMNSLNLHFTGNTSITEDKLSYTIAQ-YNSSRHQAGRLNEVWMNVPG 198
A+ + + KE+E TG +T D+L + Q + ++ GR+ W N+
Sbjct: 82 LARVEAVTKEIET---------TGTYQLTGDELIFATKQAWRNAPRCIGRIQ--WSNLQV 130
Query: 199 FNAEGCSNYRRNY 211
F+A CS R +
Sbjct: 131 FDARSCSTAREMF 143
>pdb|3LQM|A Chain A, Structure Of The Il-10r2 Common Chain
pdb|3LQM|B Chain B, Structure Of The Il-10r2 Common Chain
Length = 201
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 114 PQPNSELNLEIEKWTSHCIAVRKFSGFAKDDN 145
PQ + E+ +E WT++C+ VR GF D N
Sbjct: 152 PQYDFEVLRNLEPWTTYCVQVR---GFLPDRN 180
>pdb|2PA8|D Chain D, X-Ray Crystal Structure Of The DL SUBCOMPLEX OF THE
SULFOLOBUS Solfataricus Rna Polymerase
pdb|2PMZ|D Chain D, Archaeal Rna Polymerase From Sulfolobus Solfataricus
pdb|2PMZ|S Chain S, Archaeal Rna Polymerase From Sulfolobus Solfataricus
pdb|3HKZ|D Chain D, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
pdb|3HKZ|O Chain O, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
Length = 265
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 95 TTANGSVCYVKIYLTAKSPPQP 116
T N CY KIY+ A++P +P
Sbjct: 85 CTENCEKCYTKIYIEAEAPNEP 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.129 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,857,590
Number of Sequences: 62578
Number of extensions: 224592
Number of successful extensions: 547
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 534
Number of HSP's gapped (non-prelim): 16
length of query: 211
length of database: 14,973,337
effective HSP length: 95
effective length of query: 116
effective length of database: 9,028,427
effective search space: 1047297532
effective search space used: 1047297532
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)