Query 028252
Match_columns 211
No_of_seqs 131 out of 489
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 08:37:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028252.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028252hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04832 SOUL: SOUL heme-bindi 100.0 4.5E-55 9.7E-60 357.2 17.9 169 22-197 1-176 (176)
2 PRK10016 DNA gyrase inhibitor; 97.8 0.0031 6.7E-08 49.9 16.8 145 36-197 2-153 (156)
3 PF06445 GyrI-like: GyrI-like 97.5 0.013 2.9E-07 44.3 15.7 147 36-197 2-155 (155)
4 COG3449 DNA gyrase inhibitor [ 95.2 1.3 2.8E-05 35.6 13.7 142 36-195 2-148 (154)
5 smart00871 AraC_E_bind Bacteri 93.8 2.1 4.6E-05 32.1 16.8 151 38-197 3-158 (158)
6 PRK10016 DNA gyrase inhibitor; 92.3 1 2.3E-05 35.3 8.3 69 121-197 2-74 (156)
7 COG3449 DNA gyrase inhibitor [ 91.9 0.79 1.7E-05 36.9 7.0 57 121-184 2-58 (154)
8 PF06445 GyrI-like: GyrI-like 89.1 1.6 3.5E-05 32.6 6.4 69 121-194 2-71 (155)
9 smart00871 AraC_E_bind Bacteri 73.0 20 0.00044 26.6 7.0 60 122-184 2-61 (158)
10 PRK15121 right oriC-binding tr 70.3 15 0.00033 31.7 6.5 68 123-198 215-289 (289)
11 COG4978 Transcriptional regula 49.7 1.3E+02 0.0029 23.9 16.5 143 37-197 5-152 (153)
12 PF14526 Cass2: Integron-assoc 45.3 1.3E+02 0.0028 22.6 15.1 143 38-196 1-150 (150)
13 COG4978 Transcriptional regula 42.2 1.8E+02 0.0038 23.2 8.1 41 121-162 4-44 (153)
14 PF13956 Ibs_toxin: Toxin Ibs, 41.7 17 0.00036 18.7 1.0 15 1-15 2-16 (19)
15 PF02950 Conotoxin: Conotoxin; 38.1 11 0.00023 25.9 0.0 29 1-29 1-30 (75)
16 PF07172 GRP: Glycine rich pro 37.1 11 0.00023 27.8 -0.1 18 3-20 6-23 (95)
17 PHA00159 endonuclease I 33.5 71 0.0015 25.4 3.9 44 152-198 22-68 (148)
18 PF00735 Septin: Septin; Inte 28.7 65 0.0014 28.1 3.4 45 24-76 199-251 (281)
19 COG3708 Uncharacterized protei 25.1 3.6E+02 0.0077 21.5 14.3 88 99-198 65-156 (157)
20 PF07157 DNA_circ_N: DNA circu 23.5 67 0.0014 23.6 2.1 28 134-161 50-77 (93)
21 PF02120 Flg_hook: Flagellar h 23.2 1.8E+02 0.0039 19.8 4.3 44 120-163 27-70 (85)
22 PF14657 Integrase_AP2: AP2-li 22.1 1.5E+02 0.0033 18.2 3.3 26 135-160 19-44 (46)
23 PF08635 ox_reductase_C: Putat 21.0 1.4E+02 0.003 23.6 3.5 73 63-161 54-128 (142)
No 1
>PF04832 SOUL: SOUL heme-binding protein; InterPro: IPR006917 This family represents a group of putative haem-binding proteins []. It includes archaeal and bacterial homologues.; PDB: 2HVA_A 2GOV_A 4A1M_A 3R85_E 2YC9_A 3R8K_B 3R8J_B.
Probab=100.00 E-value=4.5e-55 Score=357.19 Aligned_cols=169 Identities=36% Similarity=0.620 Sum_probs=135.4
Q ss_pred CCCCCCeEEEeecCCeEEEEECCceEEEEEeccCchhchHHHHHHHHHhhhhcCCCCCCCCCCccceEEEeccCC--CCC
Q 028252 22 AMESPHYAVVHSESDFEIRLYGEAFWASALVQRSSFQNSTKQGFHRLYQYIHGANLNSARFPVTAPVLTSINPTT--ANG 99 (211)
Q Consensus 22 ~~e~P~Y~vl~~~~~yEiR~Y~~~~wv~t~~~~~~~~~A~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~i~p~~--~~~ 99 (211)
+.|||+|+||++.++||||+|++++||+|++.+++++.|..+||++|++||+|+|+++++|+||+||++++.+.+ +|+
T Consensus 1 ~~E~P~Y~v~~~~~~~EiR~Y~~~~w~~t~~~~~~~~~a~~~~f~~L~~Yi~G~N~~~~ki~mT~PV~~~~~~~~~~~~~ 80 (176)
T PF04832_consen 1 DIECPPYEVLKKGDDYEIRRYPPAKWASTTVSGCSFEEASSSGFRRLFRYIFGKNSAGEKIAMTAPVLTQVIPMTAESCE 80 (176)
T ss_dssp --BS-SEEEECCCSSCEEEEE--CEEEEEEEECS-HHHHHHHHHHHHHHHHCT-CTT------BS-EEEEEEETTTTTCE
T ss_pred CCcCCCeEEEEeCCCEEEEEECCceEEEEEecCCChhHHHHHHHHHHHHHHhcCCcccceeeccCCEEEEEEcCCCcccC
Confidence 369999999999999999999999999999999999999999999999999999999999999999999985332 378
Q ss_pred cEEEEEEEec---C-CCCCCCCCCCCeEEEeeCCeEEEEEEecCcCChhHHHHHHHHHHHHHhcCCCCCCcccccCCcEE
Q 028252 100 SVCYVKIYLT---A-KSPPQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALMNSLNLHFTGNTSITEDKLSYT 175 (211)
Q Consensus 100 ~~~tvsF~lP---~-~~pP~P~d~~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~ 175 (211)
+.++|+|+|| | ++||+|+| ++|+|+++|++++||++|+|+++++++.+++++|+++|+++|+. +.+.++
T Consensus 81 ~~~t~~f~lP~~~~~~~~P~P~d-~~V~i~~~p~~~~~v~~F~G~~~~~~~~~~~~~L~~~L~~~g~~------~~~~~~ 153 (176)
T PF04832_consen 81 KEYTMSFFLPSEYQAENPPKPTD-PDVFIEEVPERTVYVRRFSGFATDEKIQEEAKKLRAALKKDGLK------DKGYYY 153 (176)
T ss_dssp CEEEEEEE--HHHC-TS---BSS-TTEEEEEC-SEEEEEEEECS--SHHHHHHHHHHHHHHCCCTTHH------CCCEEE
T ss_pred CcEEEEEEcCcccccccCCCCCC-CeEEEEEecCcEEEEEEECCcCCHHHHHHHHHHHHHHHHHcCCC------cCCCeE
Confidence 8999999999 6 99999996 89999999999999999999999999999999999999999843 678999
Q ss_pred EEEeCCCCCC-CCcceeEEEEec
Q 028252 176 IAQYNSSRHQ-AGRLNEVWMNVP 197 (211)
Q Consensus 176 ~A~Yd~P~~~-~~R~NEVwi~~~ 197 (211)
+|+||+||++ ++|||||||+++
T Consensus 154 ~a~Yd~P~~~~~~R~NEV~i~v~ 176 (176)
T PF04832_consen 154 VAGYDPPFTPPFNRRNEVWIPVK 176 (176)
T ss_dssp EEESSSS-SSSSSSCEEEEEE--
T ss_pred EEEcCCCCCCccCcceEEEEecC
Confidence 9999999776 999999999985
No 2
>PRK10016 DNA gyrase inhibitor; Provisional
Probab=97.83 E-value=0.0031 Score=49.93 Aligned_cols=145 Identities=15% Similarity=0.153 Sum_probs=94.9
Q ss_pred CeEEEEECCceEEEEEeccCchhchHHHHHHHHHhhhhcCCCCCCCCCCccceEEEe--ccCCCCCc--EEEEEEEecCC
Q 028252 36 DFEIRLYGEAFWASALVQRSSFQNSTKQGFHRLYQYIHGANLNSARFPVTAPVLTSI--NPTTANGS--VCYVKIYLTAK 111 (211)
Q Consensus 36 ~yEiR~Y~~~~wv~t~~~~~~~~~A~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~i--~p~~~~~~--~~tvsF~lP~~ 111 (211)
+++|+..++...+..... +++.+...++|.+|+.++..+|-. .+ +.+.-. .|.....+ .+-++.-+|.+
T Consensus 2 ~v~i~~~~~~~va~ir~~-g~~~~~~~~~~~~L~~~~~~~~l~-----~~-~~~~i~~D~p~~~~~~~~R~d~~i~v~~~ 74 (156)
T PRK10016 2 NYEIKQEQKRTIAGFHLV-GPWEQTVKQGFEQLMMWVDSHNIV-----PK-EWVAVYYDNPDEVPAEKLRCDTVVTVPDD 74 (156)
T ss_pred ceEEEEccCceEEEEEee-cCchhHHHHHHHHHHHHHHHcCCC-----CC-cEEEEECCCCCCCChHHceeeEEEEeCCC
Confidence 478899999999998875 444445789999999999776632 12 223322 22111112 37789999933
Q ss_pred C-CCCCCCCCCeEEEeeCCeEEEEEEecCcCChhHHHHHHHH-HHHHHhcCCCCCCcccccCCcEEEEEeC-CCCCCCCc
Q 028252 112 S-PPQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVEA-LMNSLNLHFTGNTSITEDKLSYTIAQYN-SSRHQAGR 188 (211)
Q Consensus 112 ~-pP~P~d~~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~-L~~~L~~~g~~~~~~~~~~~~~~~A~Yd-~P~~~~~R 188 (211)
. .|... ..+.+.++|+.++||..+.|. -+.+.+.... +.+||..+|.+ ..+.+-+-.|. .|.....-
T Consensus 75 ~~~~~~~--~~~~~~~ip~g~yAv~~~~G~--~~~l~~~~~~i~~~Wl~~sgy~------~~~~p~~E~Y~~~~~~~~~~ 144 (156)
T PRK10016 75 FVLPENS--EGVILTEIPGGQYAVAVARVV--DDDFAKPWYQFFNSLLQDSAYQ------MAPKPCFEVYLNDGAEDGYW 144 (156)
T ss_pred cccCCCC--CCeEEEEECCCcEEEEEEECC--HHHHHHHHHHHHHHhchhcCCc------cCCCCCEEEeCCCCCCCCcE
Confidence 3 33222 368999999999999999995 4457776767 77899999854 23234444454 34333222
Q ss_pred ceeEEEEec
Q 028252 189 LNEVWMNVP 197 (211)
Q Consensus 189 ~NEVwi~~~ 197 (211)
.=|||++++
T Consensus 145 ~tei~iPI~ 153 (156)
T PRK10016 145 DIEMYVPVQ 153 (156)
T ss_pred EEEEEEEeE
Confidence 459999996
No 3
>PF06445 GyrI-like: GyrI-like small molecule binding domain; InterPro: IPR010499 This domain is found in the probable effector binding domain of a number of different bacterial transcription activators [] and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.; PDB: 1JYH_A 1D5Y_B 3B49_A 3E0H_A 2KCU_A 3LUR_B 1EXI_A 3Q3D_A 1EXJ_A 3Q5S_A ....
Probab=97.51 E-value=0.013 Score=44.31 Aligned_cols=147 Identities=14% Similarity=0.147 Sum_probs=96.9
Q ss_pred CeEEEEECCceEEEEEeccCchhch--HHHHHHHHHhhhhcCCCCCCCCCCccceEEEeccC--CCCCcEEEEEEEec-C
Q 028252 36 DFEIRLYGEAFWASALVQRSSFQNS--TKQGFHRLYQYIHGANLNSARFPVTAPVLTSINPT--TANGSVCYVKIYLT-A 110 (211)
Q Consensus 36 ~yEiR~Y~~~~wv~t~~~~~~~~~A--~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~i~p~--~~~~~~~tvsF~lP-~ 110 (211)
+++|+.-++...+..... .+..+. ....+.+|..++.-.+... ...|.+...... ......+.....++ .
T Consensus 2 ~~~i~~~p~~~v~~~~~~-~~~~~~~~i~~~~~~l~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 76 (155)
T PF06445_consen 2 EVEIVTLPAFRVAGIRRK-GPYEEEDSIPELWQRLMSWLKEIGLST----DPGPIIGIYYDNPNITDDEEFRYDIGVEVD 76 (155)
T ss_dssp CEEEEEEEEEEEEEEEEE-EEHHHHHHHHHHHHHHHHHHHHHHHCC----SSSSEEEEEEECCTSSTGCEEEEEEEEEEC
T ss_pred CcEEEEECCEEEEEEEEE-ECCchhhhHHHHHHHHHHHHHHhhccc----CCCcceeEEeccccccCCcceEEEEEEEEc
Confidence 578888899988888775 344433 6788999998887433211 344554443222 11344555556566 3
Q ss_pred CCCCCCCCCCCeEEEeeCCeEEEEEEecCcCChhHHHHHHHHHHH-HHhcCCCCCCcccccCCcEEEEEeCCCCC-CCCc
Q 028252 111 KSPPQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALMN-SLNLHFTGNTSITEDKLSYTIAQYNSSRH-QAGR 188 (211)
Q Consensus 111 ~~pP~P~d~~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~-~L~~~g~~~~~~~~~~~~~~~A~Yd~P~~-~~~R 188 (211)
...+.| ..+....+|+..+++..|.|.. +.+.+....|.+ ||.++|+. ...+..+-...+.|.. ...-
T Consensus 77 ~~~~~~---~~~~~~~ip~g~ya~~~~~G~~--~~l~~~~~~l~~~~l~~~g~~-----~~~~~~~E~y~~~~~~~~~~~ 146 (155)
T PF06445_consen 77 EDVPNP---DGMESRTIPAGKYAVFEHKGPY--DDLQEAYQKLYNEWLPESGYE-----RRDGPDFEIYLNDPDTDEEEY 146 (155)
T ss_dssp TTCSGC---TTSEEEEEECEEEEEEEEESCG--HGHHHHHHHHHHCHHHHCTCE-----EESSEEEEEEESSTTTTSCGE
T ss_pred ccccCC---ceEEEEEEcCcEEEEEEEEccH--HHHHHHHHHHHhhhHHHCCCc-----cCCCCcEEEECCCCCCCCCce
Confidence 322333 3678889999999999999987 778899999999 99999852 1334444444455553 3455
Q ss_pred ceeEEEEec
Q 028252 189 LNEVWMNVP 197 (211)
Q Consensus 189 ~NEVwi~~~ 197 (211)
.=|||||++
T Consensus 147 ~~ei~iPik 155 (155)
T PF06445_consen 147 VTEIYIPIK 155 (155)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEC
Confidence 669999985
No 4
>COG3449 DNA gyrase inhibitor [DNA replication, recombination, and repair]
Probab=95.20 E-value=1.3 Score=35.63 Aligned_cols=142 Identities=17% Similarity=0.116 Sum_probs=89.5
Q ss_pred CeEEEEECCceEEEEEeccCchhchHHHHHHHHHhhhhcCCCCCCCCCCccceEEEe--ccCCC--CCcEEEEEEEecCC
Q 028252 36 DFEIRLYGEAFWASALVQRSSFQNSTKQGFHRLYQYIHGANLNSARFPVTAPVLTSI--NPTTA--NGSVCYVKIYLTAK 111 (211)
Q Consensus 36 ~yEiR~Y~~~~wv~t~~~~~~~~~A~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~i--~p~~~--~~~~~tvsF~lP~~ 111 (211)
+++|+..++..+|...-.+ ...-..++|.+|..+-.-++--. -++.-+.-. .|..- .+=.+-.+-.+|
T Consensus 2 dv~I~e~p~~~VA~~rh~G--~~~~~~~~~~~l~~W~~~~~l~p----~~S~~~gI~~ddP~~Tp~e~~R~D~cv~v~-- 73 (154)
T COG3449 2 DVEIIELPPIPVAYLRHVG--DPATLKQTFEQLIAWRRENGLLP----EQSETLGIYQDDPDTTPAEKCRYDACVVVP-- 73 (154)
T ss_pred CceEEecCCceEEEEEeeC--cHHHHHHHHHHHHHHHHHcCCCC----CCceEEEEecCCCCCCCHHHceeeEEEEcC--
Confidence 7899999999999988765 44567889999999987665321 122222221 12110 222455666666
Q ss_pred CCCCCCCCCCeEEEeeCCeEEEEEEecCcCChhHHHHH-HHHHHHHHhcCCCCCCcccccCCcEEEEEeCCCCCCCCcce
Q 028252 112 SPPQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKE-VEALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRHQAGRLN 190 (211)
Q Consensus 112 ~pP~P~d~~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~-~~~L~~~L~~~g~~~~~~~~~~~~~~~A~Yd~P~~~~~R~N 190 (211)
.|.+.++..|..-++|+..+||.+|.|... ++.+- ..-+.+||.+.| +...+.+.+.+|=...- ..-..
T Consensus 74 -~~~~~n~~~v~~~~i~GG~YAV~r~~~~~d--~~~~aw~~if~ewlp~Sg------~~~~d~P~~e~y~n~~~-~~~~~ 143 (154)
T COG3449 74 -EPIPENSEGVQLGEIPGGLYAVARFRGTAD--DLAKAWGYIFGEWLPASG------YEPRDRPILERYLNFPA-EDPEH 143 (154)
T ss_pred -CccCCCCCceeEeeecCCceEEEEEeccHH--HHHHHHHHHHhhhccccC------cccCCCchHHHHhccCC-CCcce
Confidence 233333468999999999999999999652 34444 444566777776 44677788888844433 33444
Q ss_pred eEEEE
Q 028252 191 EVWMN 195 (211)
Q Consensus 191 EVwi~ 195 (211)
|+.+.
T Consensus 144 e~~vd 148 (154)
T COG3449 144 EIEVD 148 (154)
T ss_pred eEEEE
Confidence 55443
No 5
>smart00871 AraC_E_bind Bacterial transcription activator, effector binding domain. This domain is found in the probable effector binding domain of a number of different bacterial transcription activators PUBMED:10802742 and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.
Probab=93.81 E-value=2.1 Score=32.07 Aligned_cols=151 Identities=12% Similarity=0.027 Sum_probs=81.4
Q ss_pred EEEEECCceEEEEEeccCchhchHHHHHHHHHhhhhcCCCCCCCCCCccceEEEe--ccCCCCCcEEEEEEEec-CCCCC
Q 028252 38 EIRLYGEAFWASALVQRSSFQNSTKQGFHRLYQYIHGANLNSARFPVTAPVLTSI--NPTTANGSVCYVKIYLT-AKSPP 114 (211)
Q Consensus 38 EiR~Y~~~~wv~t~~~~~~~~~A~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~i--~p~~~~~~~~tvsF~lP-~~~pP 114 (211)
++..-++...+..............+.|.+|+.++...+....... .+++.-. .+.....+.+.+.+-+| ... +
T Consensus 3 ~i~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~-~ 79 (158)
T smart00871 3 RIVELPAFKVAGLRHRGPYEEEKIPELWQRLIAWAKELGLLPIGPS--GPPYGVYYDDPDDTPEGEFRYDAGVEVSDE-V 79 (158)
T ss_pred EEEEcCCceEEEEEeecCcccccHHHHHHHHHHHHHHcCCCCCCCC--ccEEEEECCCCCCCChhHeEEEEEEEeCCC-C
Confidence 4444455555554443221112356788889888776553322221 2322222 12111123455555555 222 2
Q ss_pred CCCCCCCeEEEeeCCeEEEEEEecCcCChhHHHHHHHHHHHHHhcCCCCCCcccccCCcEEEEEeCCCCC--CCCcceeE
Q 028252 115 QPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRH--QAGRLNEV 192 (211)
Q Consensus 115 ~P~d~~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~A~Yd~P~~--~~~R~NEV 192 (211)
... ..+.+..+|+..+++.+|.|- ..+.+.+...+|..++..+|... ....+..+--.++.|.. +....=|+
T Consensus 80 ~~~--~~~~~~~~p~~~y~~~~~~g~-~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~E~y~~~~~~~~~~~~~~ei 153 (158)
T smart00871 80 ENP--EGVETKEIPAGKYAVFTHKGG-SYDEIQETWEAIYGEWLPNSGYE---LRDAGPDFEIYLNDPADTDPEELVTEI 153 (158)
T ss_pred CCC--CCceEEEECCCcEEEEEEcCC-CHHHHHHHHHHHHHhhcccCCCc---cCcCCceEEEEeCCCCCCChhHeEEEE
Confidence 221 357888999999999999993 46678899999999988776320 10112222233444432 13446788
Q ss_pred EEEec
Q 028252 193 WMNVP 197 (211)
Q Consensus 193 wi~~~ 197 (211)
+|+++
T Consensus 154 ~ipv~ 158 (158)
T smart00871 154 YIPIK 158 (158)
T ss_pred EEEcC
Confidence 98874
No 6
>PRK10016 DNA gyrase inhibitor; Provisional
Probab=92.33 E-value=1 Score=35.31 Aligned_cols=69 Identities=19% Similarity=0.124 Sum_probs=51.1
Q ss_pred CeEEEeeCCeEEEEEEecCcCChhHHHHHHHHHHHHHhcCCCCCCcccccCCcEEEEEeCCC--CCCCCcce--eEEEEe
Q 028252 121 NLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALMNSLNLHFTGNTSITEDKLSYTIAQYNSS--RHQAGRLN--EVWMNV 196 (211)
Q Consensus 121 ~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~A~Yd~P--~~~~~R~N--EVwi~~ 196 (211)
+|+|+++|++.++..+..|...+ .+.+...+|.+++.++|+. .. ......||.| .....-|= ||-++.
T Consensus 2 ~v~i~~~~~~~va~ir~~g~~~~-~~~~~~~~L~~~~~~~~l~------~~-~~~~i~~D~p~~~~~~~~R~d~~i~v~~ 73 (156)
T PRK10016 2 NYEIKQEQKRTIAGFHLVGPWEQ-TVKQGFEQLMMWVDSHNIV------PK-EWVAVYYDNPDEVPAEKLRCDTVVTVPD 73 (156)
T ss_pred ceEEEEccCceEEEEEeecCchh-HHHHHHHHHHHHHHHcCCC------CC-cEEEEECCCCCCCChHHceeeEEEEeCC
Confidence 58999999999999999997643 4778889999999999854 22 3677889999 44433233 444544
Q ss_pred c
Q 028252 197 P 197 (211)
Q Consensus 197 ~ 197 (211)
.
T Consensus 74 ~ 74 (156)
T PRK10016 74 D 74 (156)
T ss_pred C
Confidence 4
No 7
>COG3449 DNA gyrase inhibitor [DNA replication, recombination, and repair]
Probab=91.88 E-value=0.79 Score=36.85 Aligned_cols=57 Identities=11% Similarity=0.026 Sum_probs=47.8
Q ss_pred CeEEEeeCCeEEEEEEecCcCChhHHHHHHHHHHHHHhcCCCCCCcccccCCcEEEEEeCCCCC
Q 028252 121 NLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRH 184 (211)
Q Consensus 121 ~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~A~Yd~P~~ 184 (211)
+|.|.+.|+..||..+-.| ......+-.++|.+|.+++|+-+ ..+...-..||+|-+
T Consensus 2 dv~I~e~p~~~VA~~rh~G--~~~~~~~~~~~l~~W~~~~~l~p-----~~S~~~gI~~ddP~~ 58 (154)
T COG3449 2 DVEIIELPPIPVAYLRHVG--DPATLKQTFEQLIAWRRENGLLP-----EQSETLGIYQDDPDT 58 (154)
T ss_pred CceEEecCCceEEEEEeeC--cHHHHHHHHHHHHHHHHHcCCCC-----CCceEEEEecCCCCC
Confidence 6899999999999999999 78889999999999999999641 235566677888875
No 8
>PF06445 GyrI-like: GyrI-like small molecule binding domain; InterPro: IPR010499 This domain is found in the probable effector binding domain of a number of different bacterial transcription activators [] and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.; PDB: 1JYH_A 1D5Y_B 3B49_A 3E0H_A 2KCU_A 3LUR_B 1EXI_A 3Q3D_A 1EXJ_A 3Q5S_A ....
Probab=89.06 E-value=1.6 Score=32.59 Aligned_cols=69 Identities=16% Similarity=0.049 Sum_probs=52.6
Q ss_pred CeEEEeeCCeEEEEEEecCcCChhH-HHHHHHHHHHHHhcCCCCCCcccccCCcEEEEEeCCCCCCCCcceeEEE
Q 028252 121 NLEIEKWTSHCIAVRKFSGFAKDDN-INKEVEALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRHQAGRLNEVWM 194 (211)
Q Consensus 121 ~V~i~~~p~~~v~v~~F~G~~t~~~-~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~A~Yd~P~~~~~R~NEVwi 194 (211)
+|+|+++|+++++..+..|...+.. +.+..++|.+++...++. . ....++...||.|..........++
T Consensus 2 ~~~i~~~p~~~v~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~----~-~~~~~~~i~~~~~~~~~~~~~~~~~ 71 (155)
T PF06445_consen 2 EVEIVTLPAFRVAGIRRKGPYEEEDSIPELWQRLMSWLKEIGLS----T-DPGPIIGIYYDNPNITDDEEFRYDI 71 (155)
T ss_dssp CEEEEEEEEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHC----C-SSSSEEEEEEECCTSSTGCEEEEEE
T ss_pred CcEEEEECCEEEEEEEEEECCchhhhHHHHHHHHHHHHHHhhcc----c-CCCcceeEEeccccccCCcceEEEE
Confidence 5899999999999999999887777 899999999999988643 1 4556667788887543444444443
No 9
>smart00871 AraC_E_bind Bacterial transcription activator, effector binding domain. This domain is found in the probable effector binding domain of a number of different bacterial transcription activators PUBMED:10802742 and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.
Probab=72.96 E-value=20 Score=26.56 Aligned_cols=60 Identities=10% Similarity=-0.034 Sum_probs=44.2
Q ss_pred eEEEeeCCeEEEEEEecCcCChhHHHHHHHHHHHHHhcCCCCCCcccccCCcEEEEEeCCCCC
Q 028252 122 LEIEKWTSHCIAVRKFSGFAKDDNINKEVEALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRH 184 (211)
Q Consensus 122 V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~A~Yd~P~~ 184 (211)
++|.++|+..++..+..|...+..+.+..++|.+++...++.. ....+..+...|+.|..
T Consensus 2 ~~i~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 61 (158)
T smart00871 2 VRIVELPAFKVAGLRHRGPYEEEKIPELWQRLIAWAKELGLLP---IGPSGPPYGVYYDDPDD 61 (158)
T ss_pred CEEEEcCCceEEEEEeecCcccccHHHHHHHHHHHHHHcCCCC---CCCCccEEEEECCCCCC
Confidence 6788899999999999998875567788888888888876431 11224566677777764
No 10
>PRK15121 right oriC-binding transcriptional activator; Provisional
Probab=70.26 E-value=15 Score=31.73 Aligned_cols=68 Identities=6% Similarity=0.059 Sum_probs=44.5
Q ss_pred EEEeeCCeEEEEEEecCcCChhHHHHHHHHH-HHHHhcCCCCCCcccccCCcEEEEEeC----CCC-CC-CCcceeEEEE
Q 028252 123 EIEKWTSHCIAVRKFSGFAKDDNINKEVEAL-MNSLNLHFTGNTSITEDKLSYTIAQYN----SSR-HQ-AGRLNEVWMN 195 (211)
Q Consensus 123 ~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L-~~~L~~~g~~~~~~~~~~~~~~~A~Yd----~P~-~~-~~R~NEVwi~ 195 (211)
...++|+.++||-+|.|-..+ +.+-...+ .+||-..|+. ..+.+-+-.|. .|. +. ..-.=|||||
T Consensus 215 ~~~~Ip~G~YAvF~~~G~~~~--l~~~~~~Iy~~WLP~sg~~------~~~~p~~e~y~~~~~~~~~~~~~~~~~ei~iP 286 (289)
T PRK15121 215 HPVMLQGGEYVMFTYEGLGTG--LQEFILTVYGTCMPMLNLT------RRKGQDIERYYPAEDAKAGDRPINLRCEYLIP 286 (289)
T ss_pred ceEeeCCCCEEEEEEeCCHHH--HHHHHHHHHHHHCCCCCcc------ccCCCCEEEEecccCccccCCCceEEEEEEEE
Confidence 456789999999999998743 66666666 5799888854 33344444553 333 21 2223499999
Q ss_pred ecC
Q 028252 196 VPG 198 (211)
Q Consensus 196 ~~~ 198 (211)
+++
T Consensus 287 i~~ 289 (289)
T PRK15121 287 IRR 289 (289)
T ss_pred ecC
Confidence 864
No 11
>COG4978 Transcriptional regulator, effector-binding domain/component [Transcription / Signal transduction mechanisms]
Probab=49.73 E-value=1.3e+02 Score=23.94 Aligned_cols=143 Identities=12% Similarity=0.112 Sum_probs=87.9
Q ss_pred eEEEEECCceEEEEEeccCchhchHHHHHHHHHhhhhcCCCCCCCCCCccceEEEe--ccCCCCCcEEEEEEEecCCCCC
Q 028252 37 FEIRLYGEAFWASALVQRSSFQNSTKQGFHRLYQYIHGANLNSARFPVTAPVLTSI--NPTTANGSVCYVKIYLTAKSPP 114 (211)
Q Consensus 37 yEiR~Y~~~~wv~t~~~~~~~~~A~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~i--~p~~~~~~~~tvsF~lP~~~pP 114 (211)
..+...++...+....... .......++..|.++.+-++. +.+ .|....+ .+-++.+-..-+++++= ...+
T Consensus 5 ~~~~~~~~~~v~~ir~~~~-~~~~~~~~~~el~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~s~~i~-~~~~ 77 (153)
T COG4978 5 VVIKKLEEIKVVGIRFTGI-PERLIEQVYSELCNFLKSNGI----IPI-GPYGATIFHEPLKEEDVDIEVSIPIS-GEVE 77 (153)
T ss_pred cEEEeecceeEEEEEEecC-cHHHHHHHHHHHHHHHhhcCc----ccc-CCceEEEEeeeecccccccceeEEEE-EecC
Confidence 4566777777777776543 556778889999988875541 222 2333332 11111111223333333 1112
Q ss_pred CCCCCCCeEEEeeCCeEEEEEEecCcCChhHHHHHHHHHHHHHhcCCCCCCcccccCCcEEEEEeCCCCC---CCCccee
Q 028252 115 QPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRH---QAGRLNE 191 (211)
Q Consensus 115 ~P~d~~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~A~Yd~P~~---~~~R~NE 191 (211)
.| .++++...|..+++...|.|...+ +.+..++|.++++++|.. ..+..+=.--.+|.+ +..=.-|
T Consensus 78 --~~-~~~~~~~~P~g~~a~~~~~G~~~~--~~~~y~rli~~iee~g~~------i~g~~~E~y~~d~~~~~~~~e~~te 146 (153)
T COG4978 78 --GD-IDIKIKTLPKGKYACIIHKGSYEE--VEQAYKRLIEYIEENGLE------IIGPSREVYLIDPATEVNPEEYLTE 146 (153)
T ss_pred --CC-CcceeEEccCceEEEEEEEcCccc--HHHHHHHHHHHHHHhCCc------ccCceEEEEecCCccccChhHeEEE
Confidence 43 689999999999999999998755 788899999999999965 334333333344442 2344567
Q ss_pred EEEEec
Q 028252 192 VWMNVP 197 (211)
Q Consensus 192 Vwi~~~ 197 (211)
|.++++
T Consensus 147 i~i~v~ 152 (153)
T COG4978 147 IQIPVK 152 (153)
T ss_pred EEEEee
Confidence 777765
No 12
>PF14526 Cass2: Integron-associated effector binding protein; PDB: 3GK6_A.
Probab=45.34 E-value=1.3e+02 Score=22.63 Aligned_cols=143 Identities=9% Similarity=0.056 Sum_probs=66.5
Q ss_pred EEEEECCceEEEEEeccCchhc----hHHHHHHHHHhhhhcCCCCCCCCCCccceEEEeccCCCCCcEEEEEEEec-CCC
Q 028252 38 EIRLYGEAFWASALVQRSSFQN----STKQGFHRLYQYIHGANLNSARFPVTAPVLTSINPTTANGSVCYVKIYLT-AKS 112 (211)
Q Consensus 38 EiR~Y~~~~wv~t~~~~~~~~~----A~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~i~p~~~~~~~~tvsF~lP-~~~ 112 (211)
||-.-++.+.+.........+. -....+.++++...-. ++....++..-....++..+.+++..-+| .+.
T Consensus 1 ~iv~~~~~~vig~~~r~~~~~~~~~~~i~~lw~~~~~~~~~~-----~~~~~~~~y~vy~~ye~~~~~~~~~vg~~v~~~ 75 (150)
T PF14526_consen 1 EIVELPSFTVIGIRVRTPNYDEDSNKKIGELWQEFFKEGKLP-----NIKPDGPIYGVYHDYESYEGDYDYEVGVPVKED 75 (150)
T ss_dssp EEEEE--EEEEEEEEEE-HHHHHTT--HHHHHHHHHHHT-GG-----G--TT--EEEEEE--SSTTS-EEEEEEESS--T
T ss_pred CcEEeCCEEEEEEEEEecChhhhhhhHHHHHHHHHHHhchhh-----hcCCCCCEEEEEeccccCCCCeEEEEEEEecCC
Confidence 4556677777776654332222 2344555565543222 23333666655544332356788888888 443
Q ss_pred CCCCCCCCCeEEEeeCCeEEEEEEecCcCChhHHHHHHHHHHHHHhc--CCCCCCcccccCCcEEEEEeCCCCCCCCcce
Q 028252 113 PPQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALMNSLNL--HFTGNTSITEDKLSYTIAQYNSSRHQAGRLN 190 (211)
Q Consensus 113 pP~P~d~~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L~~--~g~~~~~~~~~~~~~~~A~Yd~P~~~~~R~N 190 (211)
...|. .....++|+..+++....|-.. +.+.+--.++.+++.+ .+ +.-...+.+-.|..-.. ..-.=
T Consensus 76 ~~~~~---~~~~~~ip~~~Y~~~~~~G~~~-~~i~~~w~~i~~~~~~~~~~------~~r~~~~dfE~Y~~~~~-~~~~~ 144 (150)
T PF14526_consen 76 DEVPE---GFVIIEIPAGKYAVFTVKGPYP-EAIIEAWQKIWEWFEEENND------YERAYGPDFEVYPEDPS-ENYEV 144 (150)
T ss_dssp TTSTT----EE-EEE--EEEEEEEEESSTT-HHHHHHHHHHHHHH--------------B--SEEEEE--SSS-----EE
T ss_pred ccCCC---CceEEEECCEeEEEEEEeCCCh-HHHHHHHHHHHHHHHhhCCC------ceeccCCCeEEEcCCCC-ceeEE
Confidence 33332 4677789999999999988654 3455666677777764 32 21223455666643332 13356
Q ss_pred eEEEEe
Q 028252 191 EVWMNV 196 (211)
Q Consensus 191 EVwi~~ 196 (211)
||||+|
T Consensus 145 eIyIpI 150 (150)
T PF14526_consen 145 EIYIPI 150 (150)
T ss_dssp EEEEEB
T ss_pred EEEEEC
Confidence 888875
No 13
>COG4978 Transcriptional regulator, effector-binding domain/component [Transcription / Signal transduction mechanisms]
Probab=42.19 E-value=1.8e+02 Score=23.22 Aligned_cols=41 Identities=20% Similarity=0.201 Sum_probs=37.3
Q ss_pred CeEEEeeCCeEEEEEEecCcCChhHHHHHHHHHHHHHhcCCC
Q 028252 121 NLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALMNSLNLHFT 162 (211)
Q Consensus 121 ~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L~~~g~ 162 (211)
.+.+.++++..++..++-|- .+..+.+-..+|.+.|...|.
T Consensus 4 e~~~~~~~~~~v~~ir~~~~-~~~~~~~~~~el~~~~~~~~~ 44 (153)
T COG4978 4 EVVIKKLEEIKVVGIRFTGI-PERLIEQVYSELCNFLKSNGI 44 (153)
T ss_pred ccEEEeecceeEEEEEEecC-cHHHHHHHHHHHHHHHhhcCc
Confidence 57888999999999999998 788999999999999999873
No 14
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=41.66 E-value=17 Score=18.73 Aligned_cols=15 Identities=27% Similarity=0.350 Sum_probs=8.7
Q ss_pred CcchhhHHHHHHhhh
Q 028252 1 MGLHLVPIVLPVCLV 15 (211)
Q Consensus 1 ~~~~~~~~~~~~~~~ 15 (211)
|++..+++||.++++
T Consensus 2 Mk~vIIlvvLLliSf 16 (19)
T PF13956_consen 2 MKLVIILVVLLLISF 16 (19)
T ss_pred ceehHHHHHHHhccc
Confidence 555556566665554
No 15
>PF02950 Conotoxin: Conotoxin; InterPro: IPR004214 Cone snail toxins, conotoxins, are small neurotoxic peptides with disulphide connectivity that target ion-channels or G-protein coupled receptors. Based on the number and pattern of disulphide bonds and biological activities, conotoxins can be classified into several families []. Omega, delta and kappa families of conotoxins have a knottin or inhibitor cysteine knot scaffold. The knottin scaffold is a very special disulphide-through-disulphide knot, in which the III-VI disulphide bond crosses the macrocycle formed by two other disulphide bonds (I-IV and II-V) and the interconnecting backbone segments, where I-VI indicates the six cysteine residues starting from the N terminus. The disulphide bonding network, as well as specific amino acids in inter-cysteine loops, provide the specificity of conotoxins []. The cysteine arrangements are the same for omega, delta and kappa families, even though omega conotoxins are calcium channel blockers, whereas delta conotoxins delay the inactivation of sodium channels, and kappa conotoxins are potassium channel blockers []. Mu conotoxins have two types of cysteine arrangements, but the knottin scaffold is not observed. Mu conotoxins target the voltage-gated sodium channels [], and are useful probes for investigating voltage-dependent sodium channels of excitable tissues []. Alpha conotoxins have two types of cysteine arrangements [], and are competitive nicotinic acetylcholine receptor antagonists. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2EFZ_A 1FYG_A 1RMK_A 1DG0_A 1DFY_A 1DFZ_A 2JQC_A 2YYF_A 2JQB_A 1F3K_A ....
Probab=38.14 E-value=11 Score=25.88 Aligned_cols=29 Identities=28% Similarity=0.253 Sum_probs=0.0
Q ss_pred CcchhhHHHHHHhhh-cccCCCCCCCCCeE
Q 028252 1 MGLHLVPIVLPVCLV-LSGFAIAMESPHYA 29 (211)
Q Consensus 1 ~~~~~~~~~~~~~~~-~~~~c~~~e~P~Y~ 29 (211)
|||..|++|+.|++. .+....+.+.|.+.
T Consensus 1 mKLt~vliVavLllt~~~~~~~~~~~~~~~ 30 (75)
T PF02950_consen 1 MKLTCVLIVAVLLLTTLATADLDGDQPADR 30 (75)
T ss_dssp ------------------------------
T ss_pred CCcchHHHHHHHHHHHHHhcccccccchhh
Confidence 788877777666666 33444455666553
No 16
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=37.15 E-value=11 Score=27.84 Aligned_cols=18 Identities=22% Similarity=0.357 Sum_probs=10.2
Q ss_pred chhhHHHHHHhhhcccCC
Q 028252 3 LHLVPIVLPVCLVLSGFA 20 (211)
Q Consensus 3 ~~~~~~~~~~~~~~~~~c 20 (211)
|+++.++|+++++.++..
T Consensus 6 ~llL~l~LA~lLlisSev 23 (95)
T PF07172_consen 6 FLLLGLLLAALLLISSEV 23 (95)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 455666666656555443
No 17
>PHA00159 endonuclease I
Probab=33.49 E-value=71 Score=25.36 Aligned_cols=44 Identities=7% Similarity=-0.084 Sum_probs=28.0
Q ss_pred HHHHHHhcCCCCCCcccccCCcEEEE--EeCCCCCC-CCcceeEEEEecC
Q 028252 152 ALMNSLNLHFTGNTSITEDKLSYTIA--QYNSSRHQ-AGRLNEVWMNVPG 198 (211)
Q Consensus 152 ~L~~~L~~~g~~~~~~~~~~~~~~~A--~Yd~P~~~-~~R~NEVwi~~~~ 198 (211)
+..++|+..|+. =.| +.-.+.+. .=+..++| |.+.|.|++.++|
T Consensus 22 k~ak~Le~~gv~--~~y-E~~ki~y~~pA~~~~YTPDF~LpnGiiiEvKG 68 (148)
T PHA00159 22 KVSKQLEKKGVK--FDY-ELWKIPYVIPASDHKYTPDFLLPNGIIIETKG 68 (148)
T ss_pred HHHHHHHhcCCC--eEe-eeeeeeeeccCCCCeeCCceecCCCCEEEecc
Confidence 445677777754 123 12222222 23677889 8999999999998
No 18
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=28.70 E-value=65 Score=28.14 Aligned_cols=45 Identities=24% Similarity=0.502 Sum_probs=28.0
Q ss_pred CCCCeEEEeecCCeEE--------EEECCceEEEEEeccCchhchHHHHHHHHHhhhhcCC
Q 028252 24 ESPHYAVVHSESDFEI--------RLYGEAFWASALVQRSSFQNSTKQGFHRLYQYIHGAN 76 (211)
Q Consensus 24 e~P~Y~vl~~~~~yEi--------R~Y~~~~wv~t~~~~~~~~~A~~~gF~~L~~YI~G~N 76 (211)
++++|.|+.+...++. |+|+ |=.+.+++..+.+ |..|-+.+.|.+
T Consensus 199 ~~~PFavi~s~~~~~~~~g~~~~gR~Yp---WG~vev~n~~hsD-----F~~Lr~~Ll~~~ 251 (281)
T PF00735_consen 199 SMLPFAVIGSNTEIENSNGKRVRGRKYP---WGTVEVENPEHSD-----FLKLRNLLLGTH 251 (281)
T ss_dssp HC-SEEE---SSEEEE-SSSEEEEEEET---TEEEETT-TTTSS-----HHHHHHHHHCCC
T ss_pred cceeeEEEecceeeeccCCcEEeeeecC---Ccccccccccccc-----HHHHHHHhhccc
Confidence 5789999998877766 8888 4445665543332 888888877765
No 19
>COG3708 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.07 E-value=3.6e+02 Score=21.51 Aligned_cols=88 Identities=11% Similarity=0.087 Sum_probs=57.3
Q ss_pred CcEEEEEEEec-CCCCCCCCCCCCeEEEeeCCeEEEEEEecCcCChhHHHHHHHHHHHH-HhcCCCCCCcccccCCcEEE
Q 028252 99 GSVCYVKIYLT-AKSPPQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALMNS-LNLHFTGNTSITEDKLSYTI 176 (211)
Q Consensus 99 ~~~~tvsF~lP-~~~pP~P~d~~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~-L~~~g~~~~~~~~~~~~~~~ 176 (211)
.+.|+-..-.. ++.-..|. .....++|+.+++|-...|...+ +++.-..+... +...+.+ ......+
T Consensus 65 ~g~~~y~i~~ev~~~~~~pe---~~~~i~iPa~~YavFt~~G~~~~--i~etw~~I~~~~~~~~~~~------~~~~~~f 133 (157)
T COG3708 65 EGEFDYYIGVEVEDFEDLPE---GMEVIEIPASTYAVFTHKGPIEE--IQETWQEIWKEWFPSSGYR------HAEGPEF 133 (157)
T ss_pred CCCEEEEEEEEeeccccCCC---CceEEEeccceEEEEEecCCHHH--HHHHHHHHHHhhccccccc------ccCCCce
Confidence 45666666666 33233332 34555899999999999998866 77766666665 5666533 2233356
Q ss_pred EEeCCC--CCCCCcceeEEEEecC
Q 028252 177 AQYNSS--RHQAGRLNEVWMNVPG 198 (211)
Q Consensus 177 A~Yd~P--~~~~~R~NEVwi~~~~ 198 (211)
=.||.= .. .+-.=||||+|+.
T Consensus 134 E~Yd~~~~~~-~~~~veIyIpV~k 156 (157)
T COG3708 134 EVYDERDPDS-GNGKVEIYIPVKK 156 (157)
T ss_pred EEecCCCCCC-CCceEEEEEEEec
Confidence 778764 22 5678899999873
No 20
>PF07157 DNA_circ_N: DNA circularisation protein N-terminus; InterPro: IPR009826 This entry represents the N terminus (approximately 100 residues) of a number of phage DNA circulation proteins.
Probab=23.50 E-value=67 Score=23.58 Aligned_cols=28 Identities=18% Similarity=0.236 Sum_probs=24.4
Q ss_pred EEEecCcCChhHHHHHHHHHHHHHhcCC
Q 028252 134 VRKFSGFAKDDNINKEVEALMNSLNLHF 161 (211)
Q Consensus 134 v~~F~G~~t~~~~~~~~~~L~~~L~~~g 161 (211)
..++.++...+++..+.++|.++|++.|
T Consensus 50 ~~~~~a~~~G~dy~~~~~~L~~al~~~G 77 (93)
T PF07157_consen 50 RIRVTAFFVGDDYEAQRDALIAALEAPG 77 (93)
T ss_pred EEEEEEEEECCcHHHHHHHHHHHHcCCC
Confidence 3567788888899999999999999987
No 21
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=23.24 E-value=1.8e+02 Score=19.84 Aligned_cols=44 Identities=5% Similarity=-0.004 Sum_probs=29.6
Q ss_pred CCeEEEeeCCeEEEEEEecCcCChhHHHHHHHHHHHHHhcCCCC
Q 028252 120 LNLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALMNSLNLHFTG 163 (211)
Q Consensus 120 ~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L~~~g~~ 163 (211)
-.|+|...++..-.-....--.+-..++++..+|++.|.+.|+.
T Consensus 27 v~v~l~~~~~~l~v~~~~~~~~~~~~L~~~~~~L~~~L~~~G~~ 70 (85)
T PF02120_consen 27 VEVKLRLQGGNLSVQFTAENPETKELLRQNLPELKERLQAQGLE 70 (85)
T ss_dssp EEEEEEEETTEEEEEEE--SSHHHHHHHHTHHHHHHHHHTTT-E
T ss_pred EEEEEEEeCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 35666666664433333334457889999999999999999964
No 22
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=22.07 E-value=1.5e+02 Score=18.20 Aligned_cols=26 Identities=15% Similarity=0.263 Sum_probs=22.0
Q ss_pred EEecCcCChhHHHHHHHHHHHHHhcC
Q 028252 135 RKFSGFAKDDNINKEVEALMNSLNLH 160 (211)
Q Consensus 135 ~~F~G~~t~~~~~~~~~~L~~~L~~~ 160 (211)
..-+||.|..++.+.+.++...|...
T Consensus 19 ~~k~GF~TkkeA~~~~~~~~~~~~~g 44 (46)
T PF14657_consen 19 KTKRGFKTKKEAEKALAKIEAELENG 44 (46)
T ss_pred EEcCCCCcHHHHHHHHHHHHHHHHcC
Confidence 34489999999999999999988764
No 23
>PF08635 ox_reductase_C: Putative oxidoreductase C terminal; InterPro: IPR013944 This is the C terminus of putative oxidoreductases.
Probab=21.05 E-value=1.4e+02 Score=23.65 Aligned_cols=73 Identities=22% Similarity=0.202 Sum_probs=41.9
Q ss_pred HHHHHHHhhhhcCCCCCCCCCCccceEEEeccCCCCCcEEEEEEEec-CCCCCCCCCCCCeEEE-eeCCeEEEEEEecCc
Q 028252 63 QGFHRLYQYIHGANLNSARFPVTAPVLTSINPTTANGSVCYVKIYLT-AKSPPQPNSELNLEIE-KWTSHCIAVRKFSGF 140 (211)
Q Consensus 63 ~gF~~L~~YI~G~N~~~~ki~MT~PV~~~i~p~~~~~~~~tvsF~lP-~~~pP~P~d~~~V~i~-~~p~~~v~v~~F~G~ 140 (211)
.=|..|.+|++|+ ++|.+ |. ...+.++.| -.-.+.|-|+..|--+ .+|..+.++-+|.--
T Consensus 54 THfcDL~RYfgGe------Vdldt-V~-----------a~sve~~e~~g~LskipvdEs~Ip~e~RiPR~T~A~Wky~sG 115 (142)
T PF08635_consen 54 THFCDLSRYFGGE------VDLDT-VQ-----------AHSVEWDEPPGKLSKIPVDESKIPPENRIPRATSATWKYKSG 115 (142)
T ss_pred hhHHHHHHHhcCc------eeeee-EE-----------EEeccccCCCCcCCCCCcCcccCChhhcCcceeeeEEEeccC
Confidence 4599999999996 22222 11 123555555 2333444544333333 378999999999754
Q ss_pred CChhHHHHHHHHHHHHHhcCC
Q 028252 141 AKDDNINKEVEALMNSLNLHF 161 (211)
Q Consensus 141 ~t~~~~~~~~~~L~~~L~~~g 161 (211)
+.. .|...+.-+|
T Consensus 116 AVG--------sl~H~~~LqG 128 (142)
T PF08635_consen 116 AVG--------SLTHALALQG 128 (142)
T ss_pred cee--------hhhhhhhccc
Confidence 433 3455555555
Done!