Query 028252
Match_columns 211
No_of_seqs 131 out of 489
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 14:01:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028252.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028252hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gov_A P22HBP, heme-binding pr 100.0 6.3E-57 2.2E-61 372.9 19.7 174 18-197 13-195 (195)
2 4b0y_A Heme-binding protein 2; 100.0 1.4E-56 4.8E-61 378.0 21.2 175 18-198 37-220 (227)
3 3r8j_A Heme-binding protein 2; 100.0 2.4E-56 8.4E-61 373.4 21.5 175 18-198 18-201 (212)
4 1jyh_A DNA gyrase inhibitory p 98.6 2.2E-06 7.5E-11 64.2 14.9 146 36-197 2-153 (157)
5 3e0h_A Uncharacterized protein 98.5 1.1E-05 3.9E-10 62.1 17.4 144 36-198 8-157 (158)
6 1r8e_A Multidrug-efflux transp 97.3 0.0068 2.3E-07 50.7 13.8 149 34-197 121-277 (278)
7 3b49_A LIN2189 protein; BIG 86 96.9 0.093 3.2E-06 42.2 16.5 155 35-197 23-211 (211)
8 1d5y_A ROB transcription facto 95.4 0.54 1.9E-05 38.9 14.6 148 36-198 125-287 (292)
9 3lur_A Putative bacterial tran 94.9 0.22 7.6E-06 37.8 9.9 71 121-198 86-158 (158)
10 3gk6_A Integron cassette prote 91.9 1.3 4.3E-05 34.3 9.5 141 36-197 21-170 (170)
11 3e0h_A Uncharacterized protein 86.2 4.3 0.00015 30.1 8.5 70 121-198 8-79 (158)
12 3b49_A LIN2189 protein; BIG 86 79.3 5.7 0.0002 31.4 7.1 43 121-163 24-72 (211)
13 1r8e_A Multidrug-efflux transp 65.7 12 0.00041 30.5 6.0 71 120-198 122-196 (278)
14 1jyh_A DNA gyrase inhibitory p 62.8 26 0.00088 24.6 6.8 70 121-198 2-73 (157)
15 2q3l_A Uncharacterized protein 39.0 53 0.0018 23.8 5.2 41 121-161 10-50 (126)
16 1d5y_A ROB transcription facto 37.2 1.6E+02 0.0054 23.5 8.8 58 120-183 124-185 (292)
17 2ook_A Hypothetical protein; s 32.6 88 0.003 22.5 5.5 39 121-159 10-48 (127)
18 3c6f_A YETF protein; uncharact 26.9 62 0.0021 24.6 3.8 74 103-185 65-142 (153)
19 1xhj_A Nitrogen fixation prote 21.1 1.9E+02 0.0066 19.8 5.2 39 143-199 9-48 (88)
No 1
>2gov_A P22HBP, heme-binding protein 1; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; NMR {Mus musculus} SCOP: d.60.1.4 PDB: 4a1m_A 2hva_A
Probab=100.00 E-value=6.3e-57 Score=372.93 Aligned_cols=174 Identities=20% Similarity=0.312 Sum_probs=163.0
Q ss_pred cCCCCCCCCCeEEEeecCC----eEEEEECCceEEEEEeccCchhchHHHHHHHHHhhhhcCCCCCCCCCCccceEEEec
Q 028252 18 GFAIAMESPHYAVVHSESD----FEIRLYGEAFWASALVQRSSFQNSTKQGFHRLYQYIHGANLNSARFPVTAPVLTSIN 93 (211)
Q Consensus 18 ~~c~~~e~P~Y~vl~~~~~----yEiR~Y~~~~wv~t~~~~~~~~~A~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~i~ 93 (211)
+.|.+.|||+|+||++.++ ||||+|+++.||+|+++++++++|..+||++|++||+|+|.++++|+||+||++++.
T Consensus 13 ~~~~~~E~P~Y~Vl~~~~~~~~~yEiR~Y~~~~wa~t~~~~~~~~~A~~~gF~~L~~YI~G~N~~~~kI~MTaPV~~~~~ 92 (195)
T 2gov_A 13 SLFGSVETWPWQVLSTGGKEDVSYEERACEGGKFATVEVTDKPVDEALREAMPKIMKYVGGTNDKGVGMGMTVPVSFAVF 92 (195)
T ss_dssp CCCCSCCSCCCEEEEECCCSSSCEEEEECCCCEEEEEEEESSCHHHHHHHHHHHHHHHHHTCBTTCCCCCCCCCEEEEEE
T ss_pred cccCCCCCCCeEEEEecCCCCCcEEEEEeCCeEEEEEEecCCChhHHHHHHHHHHHHHhccCCCCCCCcccccCEEEEEc
Confidence 5688999999999999877 999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCC--CCcEEEEEEEec---CCCCCCCCCCCCeEEEeeCCeEEEEEEecCcCChhHHHHHHHHHHHHHhcCCCCCCccc
Q 028252 94 PTTA--NGSVCYVKIYLT---AKSPPQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALMNSLNLHFTGNTSIT 168 (211)
Q Consensus 94 p~~~--~~~~~tvsF~lP---~~~pP~P~d~~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L~~~g~~~~~~~ 168 (211)
|+++ |++.++|+|+|| |++||+|+| ++|+|+++|++++||++|+|++++.++.+++++|+++|+++|+. +
T Consensus 93 p~~~~~~~~~~tvsF~lP~~~~~~pP~P~d-~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~~L~~~g~~----~ 167 (195)
T 2gov_A 93 PNEDGSLQKKLKVWFRIPNQFQGSPPAPSD-ESVKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLEGTPAT----Y 167 (195)
T ss_dssp ECTTSCEEEEEEEEECCCHHHHHSCCCBCS-SSCEEEECCSCEEEEEEEESCCCHHHHHHHHHHHHHHTTTSSCC----E
T ss_pred CCCCCCcCceEEEEEEcchhcccCCCCCCC-CceEEEEeCCeEEEEEEECCccCHHHHHHHHHHHHHHHHHCCCc----c
Confidence 7654 677899999999 789999996 89999999999999999999999999999999999999999865 4
Q ss_pred ccCCcEEEEEeCCCCCCCCcceeEEEEec
Q 028252 169 EDKLSYTIAQYNSSRHQAGRLNEVWMNVP 197 (211)
Q Consensus 169 ~~~~~~~~A~Yd~P~~~~~R~NEVwi~~~ 197 (211)
..+.|++|+||+||+++.|||||||+.+
T Consensus 168 -~~~~~~~a~Yn~P~~~~~RrNEV~i~~~ 195 (195)
T 2gov_A 168 -QGDVYYCAGYDPPMKPYGRRNEVWLVKA 195 (195)
T ss_dssp -EEEEEEEEESSCCSSSSCCEEEEEEEEC
T ss_pred -cCCcEEEEEeCCCCCcCCceeEEEEEeC
Confidence 5677899999999999999999999863
No 2
>4b0y_A Heme-binding protein 2; apoptosis; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.4e-56 Score=377.99 Aligned_cols=175 Identities=29% Similarity=0.482 Sum_probs=156.8
Q ss_pred cCCCCCCCCCeEEEee----cCCeEEEEECCceEEEEEeccCchhchHHHHHHHHHhhhhcCCCCCCCCCCccceEEEec
Q 028252 18 GFAIAMESPHYAVVHS----ESDFEIRLYGEAFWASALVQRSSFQNSTKQGFHRLYQYIHGANLNSARFPVTAPVLTSIN 93 (211)
Q Consensus 18 ~~c~~~e~P~Y~vl~~----~~~yEiR~Y~~~~wv~t~~~~~~~~~A~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~i~ 93 (211)
+.|.+.|||+|+||++ .++||||+|++++||+|++++.++++|...||++|++||+|+|.++++|+||+||++++.
T Consensus 37 ~~~~~~E~P~Y~vl~~~~~~~~~yEiR~Y~~~~wast~v~~~~~~~A~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~~ 116 (227)
T 4b0y_A 37 AAAQAVETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTSVESMDWDSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSYVE 116 (227)
T ss_dssp ----CCBCCCEECCC------CCSEEEEECCEEEEEEEEEESCHHHHHHHHHHHHHHHHHTCBTTCCCCCCBSCEEEEEE
T ss_pred cccCCCCCCCeEEEEecccCCCCEEEEEcCCceEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCCCccccccCEEEEEe
Confidence 6678899999999999 799999999999999999998999999999999999999999999999999999999998
Q ss_pred cCCC--CCcEEEEEEEec---CCCCCCCCCCCCeEEEeeCCeEEEEEEecCcCChhHHHHHHHHHHHHHhcCCCCCCccc
Q 028252 94 PTTA--NGSVCYVKIYLT---AKSPPQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALMNSLNLHFTGNTSIT 168 (211)
Q Consensus 94 p~~~--~~~~~tvsF~lP---~~~pP~P~d~~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L~~~g~~~~~~~ 168 (211)
|+++ |++.++|+|+|| |++||+|+| ++|+|+++|++++||++|+|+++++++.+++++|+++|+++|+. +
T Consensus 117 p~~~~~~~~~~tvsF~lP~~~q~~pP~P~D-~~V~i~~~p~~~vaVr~FsG~~~~~~~~~~~~~L~~~L~~~g~~----~ 191 (227)
T 4b0y_A 117 PGSGPFSESTITISLYIPSEQQFDPPRPLE-SDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLASILREDGKV----F 191 (227)
T ss_dssp CCC--CCCEEEEEEEECCGGGSSSCCCBSS-SSEEEEEECCEEEEEEEESSCCCHHHHHHHHHHHHHHHHHHTCC----B
T ss_pred cCCCcccCceEEEEEEcChhhccCCCCCCC-CceEEEEeCCEEEEEEEecCcCCHHHHHHHHHHHHHHHHhCCCc----c
Confidence 8764 678999999999 899999996 89999999999999999999999999999999999999999965 4
Q ss_pred ccCCcEEEEEeCCCCCCCCcceeEEEEecC
Q 028252 169 EDKLSYTIAQYNSSRHQAGRLNEVWMNVPG 198 (211)
Q Consensus 169 ~~~~~~~~A~Yd~P~~~~~R~NEVwi~~~~ 198 (211)
..+.|++|+||+||++++|||||||.+++
T Consensus 192 -~~~~y~~A~Yd~P~t~~~RrNEVwi~~~~ 220 (227)
T 4b0y_A 192 -DEKVYYTAGYNSPVKLLNRNNEVWLIQKN 220 (227)
T ss_dssp -CSSCEEEEECC---CCCSSCEEEEEEBC-
T ss_pred -CCCcEEEEEeCCCCCcCCceeEEEEEECC
Confidence 56778999999999999999999999886
No 3
>3r8j_A Heme-binding protein 2; HEBP family, SOUL protein, apoptosis; 1.60A {Homo sapiens} PDB: 3r8k_A 2yc9_A 4ayz_A 4ayz_B 3r85_E
Probab=100.00 E-value=2.4e-56 Score=373.45 Aligned_cols=175 Identities=29% Similarity=0.482 Sum_probs=162.5
Q ss_pred cCCCCCCCCCeEEEee----cCCeEEEEECCceEEEEEeccCchhchHHHHHHHHHhhhhcCCCCCCCCCCccceEEEec
Q 028252 18 GFAIAMESPHYAVVHS----ESDFEIRLYGEAFWASALVQRSSFQNSTKQGFHRLYQYIHGANLNSARFPVTAPVLTSIN 93 (211)
Q Consensus 18 ~~c~~~e~P~Y~vl~~----~~~yEiR~Y~~~~wv~t~~~~~~~~~A~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~i~ 93 (211)
+-+.+.|||+|+||++ .++||||+|++++||+|++++.++++|...||++|++||+|+|.++++|+||+||++++.
T Consensus 18 ~~~~~~E~P~Y~vl~~~~~~~~~yEiR~Y~~~~wast~v~~~~~~~A~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~~ 97 (212)
T 3r8j_A 18 AAAQAVETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTSVESMDWDSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSYVE 97 (212)
T ss_dssp ----CCBCCCEECCSSCCCCCTTCEEEEECCEEEEEEEEEESCHHHHHHHHHHHHHHHHTTCBTTCCCCCCBSCEEEEEE
T ss_pred hhcCCCCCCCeEEEEecccCCCCEEEEEcCCceEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCCCccccccCEEEEEe
Confidence 3456789999999999 789999999999999999998999999999999999999999999999999999999998
Q ss_pred cCCC--CCcEEEEEEEec---CCCCCCCCCCCCeEEEeeCCeEEEEEEecCcCChhHHHHHHHHHHHHHhcCCCCCCccc
Q 028252 94 PTTA--NGSVCYVKIYLT---AKSPPQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALMNSLNLHFTGNTSIT 168 (211)
Q Consensus 94 p~~~--~~~~~tvsF~lP---~~~pP~P~d~~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L~~~g~~~~~~~ 168 (211)
++++ |++.++|+|+|| |++||+|+| ++|+|+++|++++||++|+|++++.++.+++++|+++|+++|+. +
T Consensus 98 p~~~~~~~~~~tvsF~lP~~~q~~pP~P~d-~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~~L~~~g~~----~ 172 (212)
T 3r8j_A 98 PGSGPFSESTITISLYIPSEQQFDPPRPLE-SDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLASILREDGKV----F 172 (212)
T ss_dssp CTTSTTSCEEEEEEEECCHHHHSSCCCBSS-TTEEEEEECCEEEEEEEESSCCCHHHHHHHHHHHHHHHHHTTCC----B
T ss_pred cCCCcccCceEEEEEEcChHHccCCCCCCC-CceEEEEeCCEEEEEEEeCCcCCHHHHHHHHHHHHHHHHhCCCc----c
Confidence 7764 678999999999 899999996 89999999999999999999999999999999999999999965 4
Q ss_pred ccCCcEEEEEeCCCCCCCCcceeEEEEecC
Q 028252 169 EDKLSYTIAQYNSSRHQAGRLNEVWMNVPG 198 (211)
Q Consensus 169 ~~~~~~~~A~Yd~P~~~~~R~NEVwi~~~~ 198 (211)
..+.|++|+||+||++++|||||||.+++
T Consensus 173 -~~~~y~~A~Yd~P~t~~~RrNEVwi~~~~ 201 (212)
T 3r8j_A 173 -DEKVYYTAGYNSPVKLLNRNNEVWLIQKN 201 (212)
T ss_dssp -CSSCEEEEESSSSSCCSSSCEEEEEEBCC
T ss_pred -CCCcEEEEEeCCCCCcCCceeEEEEEeCC
Confidence 56778999999999999999999999986
No 4
>1jyh_A DNA gyrase inhibitory protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: DNA; 1.80A {Escherichia coli} SCOP: d.60.1.3
Probab=98.60 E-value=2.2e-06 Score=64.24 Aligned_cols=146 Identities=14% Similarity=0.118 Sum_probs=96.6
Q ss_pred CeEEEEECCceEEEEEeccCchhchHHHHHHHHHhhhhcCCCCCCCCCCccceEEEec--cCCC--CCcEEEEEEEecCC
Q 028252 36 DFEIRLYGEAFWASALVQRSSFQNSTKQGFHRLYQYIHGANLNSARFPVTAPVLTSIN--PTTA--NGSVCYVKIYLTAK 111 (211)
Q Consensus 36 ~yEiR~Y~~~~wv~t~~~~~~~~~A~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~i~--p~~~--~~~~~tvsF~lP~~ 111 (211)
+++|+..++...+..... .++++....+|.+|++++...|-.. .+.+.-.. +... ..-.+.+++.+|..
T Consensus 2 ~~~i~~~~~~~v~~~~~~-g~~~~~i~~~~~~l~~~~~~~~~~~------~~~~gi~~~~~~~~~~~~~~~~~~~~v~~~ 74 (157)
T 1jyh_A 2 NYEIKQEEKRTVAGFHLV-GPWEQTVKKGFEQLMMWVDSKNIVP------KEWVAVYYDNPDETPAEKLRCDTVVTVPGY 74 (157)
T ss_dssp CCEEEEECCEEEEEEEEE-SCHHHHHHHHHHHHHHHHHHTTCCC------SEEEEEECSCTTTSCGGGCEEEEEEEECTT
T ss_pred CCEEEEeCCeEEEEEEEE-CCchhhHHHHHHHHHHHHHHcCCCC------CcEEEEECCCCCCCCHHHheEEEEEEecCc
Confidence 478999999999987764 3444456789999999997765332 14433211 2110 22356666666622
Q ss_pred CCCCCCCCCCeEEEeeCCeEEEEEEecCcCChhHHHHHHHHHH-HHHhcCCCCCCcccccCCcEEEEEeC-CCCCCCCcc
Q 028252 112 SPPQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALM-NSLNLHFTGNTSITEDKLSYTIAQYN-SSRHQAGRL 189 (211)
Q Consensus 112 ~pP~P~d~~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~-~~L~~~g~~~~~~~~~~~~~~~A~Yd-~P~~~~~R~ 189 (211)
..+.|.+ ..+.+.++|+.+++|..|.|... .+.+...+|. +||.++|+. ..+.+.+-.|. .|..+....
T Consensus 75 ~~~~~~~-~~~~~~~ip~g~ya~~~~~G~~~--~~~~~~~~l~~~wl~~~g~~------~~~~~~~E~Y~~~~~~~~~~~ 145 (157)
T 1jyh_A 75 FTLPENS-EGVILTEITGGQYAVAVARVVGD--DFAKPWYQFFNSLLQDSAYE------MLPKPCFEVYLNNGAEDGYWD 145 (157)
T ss_dssp CCCCSSC-TTCEEEEECCEEEEEEEEEECSS--CCHHHHHHHHHHHTTCSSEE------ECSSCEEEEECSCHHHHSSEE
T ss_pred cccCCCC-CCeEEEEeCCCcEEEEEEEeCHH--HHHHHHHHHHHHhhcccCCc------cCCCceEEEecCCCCCcccEE
Confidence 2211332 47899999999999999999863 4667778885 999998843 34445667773 222335566
Q ss_pred eeEEEEec
Q 028252 190 NEVWMNVP 197 (211)
Q Consensus 190 NEVwi~~~ 197 (211)
.||||+++
T Consensus 146 tei~ipi~ 153 (157)
T 1jyh_A 146 IEMYVAVQ 153 (157)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEee
Confidence 79999997
No 5
>3e0h_A Uncharacterized protein; chlorobium tepidum, structural genomics, PSI-2, protein structure initiative; 1.81A {Chlorobaculum tepidum} PDB: 2kcu_A
Probab=98.52 E-value=1.1e-05 Score=62.09 Aligned_cols=144 Identities=11% Similarity=0.008 Sum_probs=99.6
Q ss_pred CeEEEEECCceEEEEEeccCchh---chHHHHHHHHHhhhhcCCCCCCCCCCccceEEEeccCCCCCcEEEEEEEec-CC
Q 028252 36 DFEIRLYGEAFWASALVQRSSFQ---NSTKQGFHRLYQYIHGANLNSARFPVTAPVLTSINPTTANGSVCYVKIYLT-AK 111 (211)
Q Consensus 36 ~yEiR~Y~~~~wv~t~~~~~~~~---~A~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~i~p~~~~~~~~tvsF~lP-~~ 111 (211)
+++|+..++...|....... +. +...++|.+|.+++..+|- ..+.|.+......+ .+.+.+.+-+| .+
T Consensus 8 ~v~I~~~p~~~va~ir~~~~-~~~~~~~i~~~~~~l~~~~~~~~l-----~~~g~~~~iy~d~~--~~~~~~~~~~~v~~ 79 (158)
T 3e0h_A 8 VCELKELAPVPALLIRTQTT-MSELGSLFEAGYHDILQLLAGQGK-----SPSGPPFARYFGMS--AGTFEVEFGFPVEG 79 (158)
T ss_dssp CEEEEEECCCEEEEEEEEEC-HHHHHHHHHHHHHHHHHHHHHTTC-----CCSSCCEEEEESCT--TSCEEEEEEEECCS
T ss_pred ccEEEeeCCceEEEEEeecC-HHHHHHHHHHHHHHHHHHHHHcCC-----CCCCCeEEEEecCC--CcceEEEEEEEeCC
Confidence 67899999999999876533 32 2334789999999886653 23444444332222 34566666667 32
Q ss_pred CCCCCCCCCCeEEEeeCCeEEEEEEecCcCChhHHHHHHHHHHHHHhcCCCCCCcccccCCcEEEEEeCCCCC-C-CCcc
Q 028252 112 SPPQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRH-Q-AGRL 189 (211)
Q Consensus 112 ~pP~P~d~~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~A~Yd~P~~-~-~~R~ 189 (211)
..+ +. ..|.+.++|+.++++.++.|...+ +.+..++|.+||.++|+. ..+..+-..+|.|.. . ...+
T Consensus 80 ~~~-~~--~~~~~~~ip~g~~a~~~~~G~~~~--i~~~~~~l~~wl~~~g~~------~~~~~~E~Y~~~p~~~~~~~~~ 148 (158)
T 3e0h_A 80 GVE-GS--GRVVTGLTPSGKAASSLYIGPYGE--IEAVYDALMKWVDDNGFD------LSGEAYEIYLDNPAETAPDQLR 148 (158)
T ss_dssp CCC-CB--TTBEEEECCCEEEEEEEEESCGGG--THHHHHHHHHHHHHTTCC------EEEEEEEEECSCTTSSCGGGCE
T ss_pred CCC-CC--CceEEEEeCCEEEEEEEEEcCccc--HHHHHHHHHHHHHHCCCC------cCCCEEEEEeCCCCCCCHHHhE
Confidence 222 22 379999999999999999997654 888889999999999854 234443344577775 2 6678
Q ss_pred eeEEEEecC
Q 028252 190 NEVWMNVPG 198 (211)
Q Consensus 190 NEVwi~~~~ 198 (211)
.||||+++.
T Consensus 149 tei~ipv~~ 157 (158)
T 3e0h_A 149 TRVSLMLHE 157 (158)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEEcC
Confidence 999999974
No 6
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=97.26 E-value=0.0068 Score=50.73 Aligned_cols=149 Identities=7% Similarity=-0.055 Sum_probs=92.2
Q ss_pred cCCeEEEEECCceEEEEEeccCchhchH-HHHHHHHHhhhhcCCCCCCCCCCccceEEEeccCCCCCcEEEE--EEEec-
Q 028252 34 ESDFEIRLYGEAFWASALVQRSSFQNST-KQGFHRLYQYIHGANLNSARFPVTAPVLTSINPTTANGSVCYV--KIYLT- 109 (211)
Q Consensus 34 ~~~yEiR~Y~~~~wv~t~~~~~~~~~A~-~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~i~p~~~~~~~~tv--sF~lP- 109 (211)
..+++|+..++...+.......+. +.. ...|.+|.+++...+ +..+.|+.......+-....+.. .+++|
T Consensus 121 ~~~v~I~~~p~~~v~~~~~~~~~~-~~i~~~~~~~l~~~~~~~~-----l~~~~~~g~~~~~~~~~~~~~~~~~~~~v~v 194 (278)
T 1r8e_A 121 LGEVFVLDEEEIRIIQTEAEGIGP-ENVLNASYSKLKKFIESAD-----GFTNNSYGATFSFQPYTSIDEMTYRHIFTPV 194 (278)
T ss_dssp TTCCEEEEECCEEEEEEECTTCCT-TTCCGGGGHHHHHHHHHHH-----SSCCCCEEEEECCCCCSCGGGCCCSEEEEEC
T ss_pred CCceEEEEcCCeEEEEeecCCCCh-HhHHHHHHHHHHHHHHHcC-----CcccCceEEEEEhHHhhcCCCcceeEEEEEe
Confidence 346889999999888876522222 223 567888999886654 23345664433211101112222 34566
Q ss_pred CCCC-CCCCCCCCeEEEeeCCeEEEEEEecCcCChhHHHHHHHHHHHHHhcCCCCCCcccccCCcEEEEEeCCCCCC---
Q 028252 110 AKSP-PQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRHQ--- 185 (211)
Q Consensus 110 ~~~p-P~P~d~~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~A~Yd~P~~~--- 185 (211)
.+.. |.|.+ ..|.+..+|+..+++..+.|.. +.+.+....|.+||.++|+. ..+..+--..+.|+..
T Consensus 195 ~~~~~~l~~~-~~~~~~~lp~g~ya~~~~~G~y--~~i~~~~~~l~~wl~~~g~~------~~g~~~E~y~~~~~~~~~~ 265 (278)
T 1r8e_A 195 LTNKQISSIT-PDMEITTIPKGRYACIAYNFSP--EHYFLNLQKLIKYIADRQLT------VVSDVYELIIPIHYSPKKQ 265 (278)
T ss_dssp CCCSCCSSCC-TTSEEEEECSEEEEEEEEECCH--HHHHHHHHHHHHHHHHTTCC------EEEEEEEEEEESCCCSSSC
T ss_pred cCcccccccc-CCceEeecCCceEEEEEEEcch--hhHHHHHHHHHHHHHHcCCc------cCCCeEEEEeecccccCCh
Confidence 2222 12222 4688999999999999999965 45677888899999999854 3343433444456542
Q ss_pred CCcceeEEEEec
Q 028252 186 AGRLNEVWMNVP 197 (211)
Q Consensus 186 ~~R~NEVwi~~~ 197 (211)
..-.-|||||++
T Consensus 266 ~~~~teI~iPv~ 277 (278)
T 1r8e_A 266 EEYRVEMKIRIA 277 (278)
T ss_dssp CCEEEEEEEEEC
T ss_pred hheEEEEEEEec
Confidence 244679999986
No 7
>3b49_A LIN2189 protein; BIG 860.1, structural genomics, MCSG, SAD, PSI-2, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.60A {Listeria innocua CLIP11262}
Probab=96.85 E-value=0.093 Score=42.23 Aligned_cols=155 Identities=8% Similarity=-0.013 Sum_probs=94.9
Q ss_pred CCeEEEEECCceEEEEEeccCchhchHHHHHHHHHhhh------hcCCCCCCC-CCCcc-ceEEEec---cCC---CCCc
Q 028252 35 SDFEIRLYGEAFWASALVQRSSFQNSTKQGFHRLYQYI------HGANLNSAR-FPVTA-PVLTSIN---PTT---ANGS 100 (211)
Q Consensus 35 ~~yEiR~Y~~~~wv~t~~~~~~~~~A~~~gF~~L~~YI------~G~N~~~~k-i~MT~-PV~~~i~---p~~---~~~~ 100 (211)
.+.+|+.-++...+.....+...+++..++|.+|+..+ ..++-.... -..+. |...-.. +.. ..+-
T Consensus 23 ~~v~i~~~p~~~v~~i~~~g~~~~~~~~~~~~~L~~~~~~ik~~~~~~~~~~g~~~y~v~~~~gi~~~d~~~~~~~~~~~ 102 (211)
T 3b49_A 23 RKPERIFVPEMNFLMVDGKGDPDGEEYQKAVQSLYAIAYTIKMSKMGETRLDGYSDFVVPPLEGFWWSEGKFDLKDRDAW 102 (211)
T ss_dssp SSCEEEEEEEEEEEEEEEESCTTSHHHHHHHHHHHHHHHHHHHGGGSCCTTTTSCCBCCCCCEEEEEESSSCCTTCGGGE
T ss_pred CCcEEEEECCeeEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccceeccceeEEeecCCccccCchhhe
Confidence 36888999999998887764433336678999999987 433321111 11222 3332221 111 0223
Q ss_pred EEEEEEEec-CCC--------------CCCCCCCCCeEEEeeCCeEEEEEEecCcCChhHHHHHHHHHHHHHhcCCCCCC
Q 028252 101 VCYVKIYLT-AKS--------------PPQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALMNSLNLHFTGNT 165 (211)
Q Consensus 101 ~~tvsF~lP-~~~--------------pP~P~d~~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L~~~g~~~~ 165 (211)
.|.+++-+| .-+ .|.+.. ..|.+.++|+..+++.++.|... .+.+...+|.+||.++|+.
T Consensus 103 ~~~~~i~vp~~v~~~~~~~a~~~~~~~~~~~~~-~~v~~~~ip~g~~a~~~h~G~y~--~~~~~~~~l~~wl~~~g~~-- 177 (211)
T 3b49_A 103 LWTSILRQPDFVTEEVLEWAKEVARKKKPDVDT-SRVKLVRFEEGECVQMMHVGPFS--EEVHTVAEMHQFMETEGLR-- 177 (211)
T ss_dssp EEEEEEEECTTCCHHHHHHHHHHHHHHCTTSCC-TTCEEEEEEEEEEEEEEEESCGG--GHHHHHHHHHHHHHHHTCC--
T ss_pred EEEEEEEcCCcccHHHHHHHHHHHhccCCCCCc-ccceEEEeCCceEEEEEEEcchh--hHHHHHHHHHHHHHHCCCc--
Confidence 556666667 211 122222 47999999999999999999875 4677888899999999852
Q ss_pred cccccC--CcEEEEEe-CCCCCC--CCcceeEEEEec
Q 028252 166 SITEDK--LSYTIAQY-NSSRHQ--AGRLNEVWMNVP 197 (211)
Q Consensus 166 ~~~~~~--~~~~~A~Y-d~P~~~--~~R~NEVwi~~~ 197 (211)
... +.+.+-.| +.|... ..-+=||+++++
T Consensus 178 ---~~~~~~~~~~EiY~~dp~~~~~~~~~tei~ipV~ 211 (211)
T 3b49_A 178 ---NDTGAIRKHHEIYLSDPRKANPEKMKTILRLPVS 211 (211)
T ss_dssp ---BCBTTTBCEEEEECSCTTTSCGGGCEEEEEEEBC
T ss_pred ---cccCCCCcEEEEEeCCCCCCChHHeEEEEEEEeC
Confidence 122 13344444 667642 333678999874
No 8
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=95.44 E-value=0.54 Score=38.86 Aligned_cols=148 Identities=6% Similarity=0.028 Sum_probs=83.1
Q ss_pred CeEEEEECCceEEEEEeccCchhchHH----HHHHHHHhhhhcCCCCCCCCCCccceEEEe--ccCC--CCCcEEEEEEE
Q 028252 36 DFEIRLYGEAFWASALVQRSSFQNSTK----QGFHRLYQYIHGANLNSARFPVTAPVLTSI--NPTT--ANGSVCYVKIY 107 (211)
Q Consensus 36 ~yEiR~Y~~~~wv~t~~~~~~~~~A~~----~gF~~L~~YI~G~N~~~~ki~MT~PV~~~i--~p~~--~~~~~~tvsF~ 107 (211)
+++|..-++...+..........+... .....|.+-+.+.+... ..+++.-. .|.. ..+..+.+..-
T Consensus 125 ~~~I~~~~~~~v~gi~~~~~~~~~~~~~~~~~~i~~lw~~~~~~~~~~-----~~~~~gi~~d~~~~~~~~~~~~~~~~~ 199 (292)
T 1d5y_A 125 EHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTI-----PPVLYGLNETRPSQDKDDEQEVFYTTA 199 (292)
T ss_dssp CEEEEEECCEEEEEEEEECCCCGGGHHHHHHHHHHHHHHHHHHHCSSC-----CSCEEEEEEEEECSSSTTCEEEEEEEE
T ss_pred CceEEEeCCeEEeeEEeeeccccccccccchhhhHHHHHHHhcccCCC-----CCCEEEEEecCCCcCcccceeEEEEEE
Confidence 688889999888887664321111111 22333444444333211 12333221 1321 12345666666
Q ss_pred ecCCCCCCCCCCCCeEEEeeCCeEEEEEEecCcCChhHHHHHHHHHH-HHHhcCCCCCCcccccCCcEEEEEeC---C-C
Q 028252 108 LTAKSPPQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALM-NSLNLHFTGNTSITEDKLSYTIAQYN---S-S 182 (211)
Q Consensus 108 lP~~~pP~P~d~~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~-~~L~~~g~~~~~~~~~~~~~~~A~Yd---~-P 182 (211)
+|.+..+.+. ..+...++|+.+++|.++.|. .+.+.+-...|. +||.++|+. ..+.+.+-.|. . |
T Consensus 200 v~v~~~~~~~--~~~~~~~iP~g~yAvf~~~G~--~~~l~~~~~~i~~~Wlp~sgy~------~~~~p~~E~Y~~~~~~~ 269 (292)
T 1d5y_A 200 LAQDQADGYV--LTGHPVMLQGGEYVMFTYEGL--GTGVQEFILTVYGTCMPMLNLT------RRKGQDIERYYPAEDAK 269 (292)
T ss_dssp EEHHHHGGGC--TTCEEEEECCEEEEEEEEEEE--GGGHHHHHHHHHHTHHHHTTCE------ECSSCEEEEECGGGC--
T ss_pred EeccccccCC--CcceEEEECCCcEEEEEecCC--HHHHHHHHHHHHHHhcccCCCc------cCCCCcEEEEeeccccC
Confidence 6611111111 258888999999999999994 566888888886 999998843 23444556675 3 3
Q ss_pred CCC--CCcceeEEEEecC
Q 028252 183 RHQ--AGRLNEVWMNVPG 198 (211)
Q Consensus 183 ~~~--~~R~NEVwi~~~~ 198 (211)
... ..-.-||||||+.
T Consensus 270 ~~~~~~~~~tEI~iPI~~ 287 (292)
T 1d5y_A 270 AGDRPINLRCELLIPIRR 287 (292)
T ss_dssp --CCSCEEEEEEEEEEEC
T ss_pred CCCCCCceEEEEEEEeeh
Confidence 222 1224599999974
No 9
>3lur_A Putative bacterial transcription regulation prote; structural genomics, joint center for structural genomics; HET: MSE PG4; 1.81A {Staphylococcus aureus}
Probab=94.94 E-value=0.22 Score=37.85 Aligned_cols=71 Identities=15% Similarity=0.224 Sum_probs=51.3
Q ss_pred CeEEEeeCCeEEEEEEecCcCChhHHHHHHHHHH-HHHhcCCCCCCcccccCCcEEEEEeCCCCCC-CCcceeEEEEecC
Q 028252 121 NLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALM-NSLNLHFTGNTSITEDKLSYTIAQYNSSRHQ-AGRLNEVWMNVPG 198 (211)
Q Consensus 121 ~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~-~~L~~~g~~~~~~~~~~~~~~~A~Yd~P~~~-~~R~NEVwi~~~~ 198 (211)
.+...++|+.++||-++.|...+ .+.+--+.+. +||-+.|+. ..+.+-+-.|+..-.. ..-.-||||++++
T Consensus 86 ~~~~~~ip~g~Yavf~~~G~~~~-~i~~~~~~i~~~wlp~sgy~------~~~~p~fE~Y~~~~~~~~~~~~ei~iPI~~ 158 (158)
T 3lur_A 86 KYDVITLASSKYMVFEAQGAVPK-AVQQKMEEVHHYIHQYQANT------VKSAPFFELYQDGDTTSEKYITEIWMPVKG 158 (158)
T ss_dssp GSEEEEECCEEEEEEEEESSTTH-HHHHHHHHHHHHHHHHCTTT------BCSSCEEEEECSSCTTSTTCEEEEEEEECC
T ss_pred CcEEEEECCceEEEEEEecChHH-HHHHHHHHHHHhhcccCCCe------eCCCccEEEECCCCCCCcceEEEEEEEEcC
Confidence 57788999999999999997543 4556666655 589888844 4455677788764322 4456799999975
No 10
>3gk6_A Integron cassette protein VCH_CASS2; novel, oyster PO HOLE, USA, structural genomics, PSI-2; HET: MSE PE4; 1.80A {Vibrio cholerae}
Probab=91.87 E-value=1.3 Score=34.35 Aligned_cols=141 Identities=9% Similarity=-0.018 Sum_probs=78.9
Q ss_pred CeEEEEECCceEEEEEeccCc------hhchHHHHHHHHHhh-hhcCCCCCCCCCCccceEEEeccCCC-CCcEEEEEEE
Q 028252 36 DFEIRLYGEAFWASALVQRSS------FQNSTKQGFHRLYQY-IHGANLNSARFPVTAPVLTSINPTTA-NGSVCYVKIY 107 (211)
Q Consensus 36 ~yEiR~Y~~~~wv~t~~~~~~------~~~A~~~gF~~L~~Y-I~G~N~~~~ki~MT~PV~~~i~p~~~-~~~~~tvsF~ 107 (211)
+|+|..-++.+.|-....... ..+...+.+.+|+.. |.+.. . ...++.-....+. ....++...-
T Consensus 21 ~~~I~~~~~f~vvGi~~r~~~~~e~~~~~~~I~~lW~~~~~~~i~~~~------~-~~~~~gv~~~~~~~~~~~~~y~ig 93 (170)
T 3gk6_A 21 GMNISEINGFEVTGFVVRTTNADEMNPMTAKIGNLWEKFYLNAAPKLT------D-KSKVYGLYTNYESDFTGAFDVIAC 93 (170)
T ss_dssp EEEEEEECCEEEEEEEEEECHHHHHSTTTCCHHHHHHHHHHHTGGGCC------T-TCCEEEEEECCSSSTTSCEEEEEE
T ss_pred CcEEEEECCEEEEEEEEEEcCcccCccchhHHHHHHHHHHHhhhhhhc------C-CCcEEEEEeecccCCCCcEEEEEE
Confidence 688888899888887654221 122345566666543 11110 0 1223322211110 2233333222
Q ss_pred ec-CCCCCCCCCCCCeEEEeeCCeEEEEEEecCcCChhHHHHHHHHHHHHHhcCCCCCCcccccCCcEEEEEeCCCCCCC
Q 028252 108 LT-AKSPPQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRHQA 186 (211)
Q Consensus 108 lP-~~~pP~P~d~~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~A~Yd~P~~~~ 186 (211)
+. .+... | ..+...++|+.++||-++.|... +.+.+--+.+..||-..|.. +.....+-+-.|+...
T Consensus 94 v~v~~~~~-p---~g~~~~~IP~g~YAVF~~~G~~p-~~i~~~w~~I~~WlP~sg~~----y~~~~~pdfE~Y~~~~--- 161 (170)
T 3gk6_A 94 SDTLSPQL-L---SESVKTKVSSGKYVTFSATGEMP-QVVIDLWNEVWNYFASEHCP----HKRAYTTDFEYYKSAN--- 161 (170)
T ss_dssp ESSCCTTT-S---TTCEEEEECCEEEEEEEEESSTT-HHHHHHHHHHHHHHC---CC----CCBCCSEEEEECCSSS---
T ss_pred EEecCCCC-C---CCcEEEEECCCCEEEEEecCCCH-HHHHHHHHHHHHhhhhcCCc----ceecCcCCEEEECCCC---
Confidence 33 21111 3 25788899999999999999553 46777777887799888711 2245567777886542
Q ss_pred CcceeEEEEec
Q 028252 187 GRLNEVWMNVP 197 (211)
Q Consensus 187 ~R~NEVwi~~~ 197 (211)
.-||||+|+
T Consensus 162 --~~eI~IpI~ 170 (170)
T 3gk6_A 162 --TVEISIAVR 170 (170)
T ss_dssp --EEEEEEEBC
T ss_pred --eEEEEEEEC
Confidence 679999985
No 11
>3e0h_A Uncharacterized protein; chlorobium tepidum, structural genomics, PSI-2, protein structure initiative; 1.81A {Chlorobaculum tepidum} PDB: 2kcu_A
Probab=86.20 E-value=4.3 Score=30.07 Aligned_cols=70 Identities=7% Similarity=-0.064 Sum_probs=47.4
Q ss_pred CeEEEeeCCeEEEEEEecCcCCh--hHHHHHHHHHHHHHhcCCCCCCcccccCCcEEEEEeCCCCCCCCcceeEEEEecC
Q 028252 121 NLEIEKWTSHCIAVRKFSGFAKD--DNINKEVEALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRHQAGRLNEVWMNVPG 198 (211)
Q Consensus 121 ~V~i~~~p~~~v~v~~F~G~~t~--~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~A~Yd~P~~~~~R~NEVwi~~~~ 198 (211)
+|+|+++|+..++..+..|...+ ..+.+.-.+|.+++..+|+. ..+..+...|| +....=+=|+.+++.+
T Consensus 8 ~v~I~~~p~~~va~ir~~~~~~~~~~~i~~~~~~l~~~~~~~~l~------~~g~~~~iy~d--~~~~~~~~~~~~~v~~ 79 (158)
T 3e0h_A 8 VCELKELAPVPALLIRTQTTMSELGSLFEAGYHDILQLLAGQGKS------PSGPPFARYFG--MSAGTFEVEFGFPVEG 79 (158)
T ss_dssp CEEEEEECCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHTTCC------CSSCCEEEEES--CTTSCEEEEEEEECCS
T ss_pred ccEEEeeCCceEEEEEeecCHHHHHHHHHHHHHHHHHHHHHcCCC------CCCCeEEEEec--CCCcceEEEEEEEeCC
Confidence 68999999999999999997532 23445667788999888854 23444434444 2223445678888765
No 12
>3b49_A LIN2189 protein; BIG 860.1, structural genomics, MCSG, SAD, PSI-2, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.60A {Listeria innocua CLIP11262}
Probab=79.27 E-value=5.7 Score=31.43 Aligned_cols=43 Identities=14% Similarity=-0.002 Sum_probs=37.1
Q ss_pred CeEEEeeCCeEEEEEEecCcCChhHHHHHHHHHHHHH------hcCCCC
Q 028252 121 NLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALMNSL------NLHFTG 163 (211)
Q Consensus 121 ~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L------~~~g~~ 163 (211)
+|.|.++|+..++.++..|-+.+..+.+...+|.+++ .++|+.
T Consensus 24 ~v~i~~~p~~~v~~i~~~g~~~~~~~~~~~~~L~~~~~~ik~~~~~~~~ 72 (211)
T 3b49_A 24 KPERIFVPEMNFLMVDGKGDPDGEEYQKAVQSLYAIAYTIKMSKMGETR 72 (211)
T ss_dssp SCEEEEEEEEEEEEEEEESCTTSHHHHHHHHHHHHHHHHHHHGGGSCCT
T ss_pred CcEEEEECCeeEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 5899999999999999999766557889999999999 888764
No 13
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=65.69 E-value=12 Score=30.55 Aligned_cols=71 Identities=10% Similarity=-0.091 Sum_probs=45.9
Q ss_pred CCeEEEeeCCeEEEEEEe-cCcCChhHH-HHHHHHHHHHHhcCCCCCCcccccCCcEEEEEeCCCCCC-CCcc-eeEEEE
Q 028252 120 LNLEIEKWTSHCIAVRKF-SGFAKDDNI-NKEVEALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRHQ-AGRL-NEVWMN 195 (211)
Q Consensus 120 ~~V~i~~~p~~~v~v~~F-~G~~t~~~~-~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~A~Yd~P~~~-~~R~-NEVwi~ 195 (211)
..|.|++.|+..++..+. .|.. ..+ .+...+|.+++.++|+. ..+.+.+..+|++++. ..+. .++.++
T Consensus 122 ~~v~I~~~p~~~v~~~~~~~~~~--~~i~~~~~~~l~~~~~~~~l~------~~~~~g~~~~~~~~~~~~~~~~~~~~v~ 193 (278)
T 1r8e_A 122 GEVFVLDEEEIRIIQTEAEGIGP--ENVLNASYSKLKKFIESADGF------TNNSYGATFSFQPYTSIDEMTYRHIFTP 193 (278)
T ss_dssp TCCEEEEECCEEEEEEECTTCCT--TTCCGGGGHHHHHHHHHHHSS------CCCCEEEEECCCCCSCGGGCCCSEEEEE
T ss_pred CceEEEEcCCeEEEEeecCCCCh--HhHHHHHHHHHHHHHHHcCCc------ccCceEEEEEhHHhhcCCCcceeEEEEE
Confidence 368999999999998888 5533 223 34456788888887743 2344544445556664 2333 368888
Q ss_pred ecC
Q 028252 196 VPG 198 (211)
Q Consensus 196 ~~~ 198 (211)
+.+
T Consensus 194 v~~ 196 (278)
T 1r8e_A 194 VLT 196 (278)
T ss_dssp CCC
T ss_pred ecC
Confidence 865
No 14
>1jyh_A DNA gyrase inhibitory protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: DNA; 1.80A {Escherichia coli} SCOP: d.60.1.3
Probab=62.83 E-value=26 Score=24.62 Aligned_cols=70 Identities=19% Similarity=0.209 Sum_probs=45.6
Q ss_pred CeEEEeeCCeEEEEEEecCcCChhHHHHHHHHHHHHHhcCCCCCCcccccCCcEEEEEeCCCCCC--CCcceeEEEEecC
Q 028252 121 NLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRHQ--AGRLNEVWMNVPG 198 (211)
Q Consensus 121 ~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~A~Yd~P~~~--~~R~NEVwi~~~~ 198 (211)
+++|++.|+..++..+..|-.. +.+.+.-++|.+++..+|+. . +..+-..+|.|... ..=+=++.+++..
T Consensus 2 ~~~i~~~~~~~v~~~~~~g~~~-~~i~~~~~~l~~~~~~~~~~------~-~~~~gi~~~~~~~~~~~~~~~~~~~~v~~ 73 (157)
T 1jyh_A 2 NYEIKQEEKRTVAGFHLVGPWE-QTVKKGFEQLMMWVDSKNIV------P-KEWVAVYYDNPDETPAEKLRCDTVVTVPG 73 (157)
T ss_dssp CCEEEEECCEEEEEEEEESCHH-HHHHHHHHHHHHHHHHTTCC------C-SEEEEEECSCTTTSCGGGCEEEEEEEECT
T ss_pred CCEEEEeCCeEEEEEEEECCch-hhHHHHHHHHHHHHHHcCCC------C-CcEEEEECCCCCCCCHHHheEEEEEEecC
Confidence 4789999999999888887542 45667778888888887743 1 23333455666531 1223456666654
No 15
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=39.03 E-value=53 Score=23.75 Aligned_cols=41 Identities=15% Similarity=0.059 Sum_probs=34.9
Q ss_pred CeEEEeeCCeEEEEEEecCcCChhHHHHHHHHHHHHHhcCC
Q 028252 121 NLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALMNSLNLHF 161 (211)
Q Consensus 121 ~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L~~~g 161 (211)
.+.|...++..+...+.+|..|.+++++-...|.+.|++.+
T Consensus 10 mi~i~~~~~~~vl~v~~~G~lt~~d~~~l~~~l~~~l~~~~ 50 (126)
T 2q3l_A 10 AIGIERSQDDFYLAFKAVGKLTHEDYEQMTPLLESALAGIK 50 (126)
T ss_dssp EEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHTTTCC
T ss_pred eEEEEEcCCCCEEEEEEEeeECHHHHHHHHHHHHHHHHhCC
Confidence 56777778888899999999999999998888888888765
No 16
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=37.20 E-value=1.6e+02 Score=23.51 Aligned_cols=58 Identities=3% Similarity=-0.223 Sum_probs=38.4
Q ss_pred CCeEEEeeCCeEEEEEEecCcCChhHHH----HHHHHHHHHHhcCCCCCCcccccCCcEEEEEeCCCC
Q 028252 120 LNLEIEKWTSHCIAVRKFSGFAKDDNIN----KEVEALMNSLNLHFTGNTSITEDKLSYTIAQYNSSR 183 (211)
Q Consensus 120 ~~V~i~~~p~~~v~v~~F~G~~t~~~~~----~~~~~L~~~L~~~g~~~~~~~~~~~~~~~A~Yd~P~ 183 (211)
.+++|.+.|+..++..+..|...++.+. ....+|.+.+...+.. ..+..+...||.|-
T Consensus 124 m~~~I~~~~~~~v~gi~~~~~~~~~~~~~~~~~~i~~lw~~~~~~~~~------~~~~~~gi~~d~~~ 185 (292)
T 1d5y_A 124 PEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPT------IPPVLYGLNETRPS 185 (292)
T ss_dssp CCEEEEEECCEEEEEEEEECCCCGGGHHHHHHHHHHHHHHHHHHHCSS------CCSCEEEEEEEEEC
T ss_pred CCceEEEeCCeEEeeEEeeeccccccccccchhhhHHHHHHHhcccCC------CCCCEEEEEecCCC
Confidence 4689999999999999999976544443 5566777777654311 23444555566554
No 17
>2ook_A Hypothetical protein; structural genomics, JOIN for structural genomics, JCSG, protein structure initiative unknown function; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP: c.13.2.2
Probab=32.60 E-value=88 Score=22.52 Aligned_cols=39 Identities=15% Similarity=0.106 Sum_probs=33.5
Q ss_pred CeEEEeeCCeEEEEEEecCcCChhHHHHHHHHHHHHHhc
Q 028252 121 NLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALMNSLNL 159 (211)
Q Consensus 121 ~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L~~ 159 (211)
.+.+....+..+...+.+|..|.+++++-...|.+.|++
T Consensus 10 mi~i~~~~~~~vl~v~~~G~lt~eD~~~l~~~i~~~l~~ 48 (127)
T 2ook_A 10 SIGINRIESVFFVTLKAIGTLTHEDYLVITPMLEGALSQ 48 (127)
T ss_dssp EEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCEEEEEEeeeECHHHHHHHHHHHHHHHhh
Confidence 466666778888899999999999999888888889988
No 18
>3c6f_A YETF protein; uncharacterized protein, predicted membrane protein, protein structure initiative, PSI-2; 2.50A {Bacillus subtilis}
Probab=26.94 E-value=62 Score=24.63 Aligned_cols=74 Identities=9% Similarity=0.093 Sum_probs=46.3
Q ss_pred EEEEEec-CCCCCCCCCCCCeEEEeeCCeEEEEEEecCcCChhHHH---HHHHHHHHHHhcCCCCCCcccccCCcEEEEE
Q 028252 103 YVKIYLT-AKSPPQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNIN---KEVEALMNSLNLHFTGNTSITEDKLSYTIAQ 178 (211)
Q Consensus 103 tvsF~lP-~~~pP~P~d~~~V~i~~~p~~~v~v~~F~G~~t~~~~~---~~~~~L~~~L~~~g~~~~~~~~~~~~~~~A~ 178 (211)
.+|++.- +.+|++|.| -.+.. .+...-+..--.|...++..+ .-.+.|.+.|+++|+. .....++|.
T Consensus 65 ~iSVi~k~~~~~~t~~d-l~~~~--~~~~~~~~lI~DG~I~~~~L~~~~~de~WL~~eLk~~g~~------~~~dVf~a~ 135 (153)
T 3c6f_A 65 MVSVLPKSDFDKPTNKD-MQIPS--KSVSLPITLIIDGEIVRDNLKEAGVDEQWLKQEMKKKNID------KTEDVLFAE 135 (153)
T ss_dssp CEEEEECGGGSCCCTTT-TTCCC--CCCCCCEEEEETTEECHHHHHHHSCCHHHHHHHHHHTTCC------SGGGEEEEE
T ss_pred CEEEEEcCcCCCCCHHH-cCccc--cccCCCeeEEECCEecHHHHhhcCCCHHHHHHHHHHcCCC------CHHHEEEEE
Confidence 3555432 556777764 34433 233333455668887765444 3567899999999853 457788899
Q ss_pred eCCCCCC
Q 028252 179 YNSSRHQ 185 (211)
Q Consensus 179 Yd~P~~~ 185 (211)
||+--.+
T Consensus 136 ~~~~g~l 142 (153)
T 3c6f_A 136 WHKNKPL 142 (153)
T ss_dssp ECTTSCC
T ss_pred EecCCcE
Confidence 9875443
No 19
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1
Probab=21.09 E-value=1.9e+02 Score=19.79 Aligned_cols=39 Identities=18% Similarity=0.101 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCcccccCCcEEEEEeCCCCCCCCcceeEEEEecC-C
Q 028252 143 DDNINKEVEALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRHQAGRLNEVWMNVPG-F 199 (211)
Q Consensus 143 ~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~A~Yd~P~~~~~R~NEVwi~~~~-~ 199 (211)
.+.+++-.++++-.|..+| |...+..+|. +.|.+.+.| |
T Consensus 9 ~~~I~~~L~~IRP~L~~dG----------Gdvelv~v~~--------g~V~V~L~GaC 48 (88)
T 1xhj_A 9 FDQVAEVIERLRPFLLRDG----------GDCTLVDVED--------GIVKLQLHGAC 48 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHS----------CEEEEEECCS--------SEEEEEEESSC
T ss_pred HHHHHHHHHHhcHHHHhcC----------CeEEEEEEEC--------CEEEEEEeecC
Confidence 4566777777888888875 5567777762 688899887 6
Done!