BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028253
(211 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UMZ|A Chain A, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UMZ|B Chain B, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UN1|A Chain A, Xyloglucan Endotransglycosylase Native Structure.
pdb|1UN1|B Chain B, Xyloglucan Endotransglycosylase Native Structure
Length = 278
Score = 277 bits (709), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 131/211 (62%), Positives = 158/211 (74%), Gaps = 6/211 (2%)
Query: 1 MKIKLVPGDSAGTVTAFYMNS-NTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQ 59
M++KLVPGDSAGTVTAFY++S N+E+ DE+DFEFLGNRTGQPY +QTN++ GKGDREQ
Sbjct: 64 MQMKLVPGDSAGTVTAFYLSSQNSEH--DEIDFEFLGNRTGQPYILQTNVFTGGKGDREQ 121
Query: 60 RVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGR--APFPMNQPMGVYSTLWE 117
R+ LWFDP ++H Y++LWN + IVF VDDVPIRV+KN FP NQPM +YS+LW
Sbjct: 122 RIYLWFDPTKEFHYYSVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWN 181
Query: 118 ADDWATRGGLEKIDWSKAPFYAYYRDFDIEGCPVPGPAN-CASNPGNWWEANNYQALTAM 176
ADDWATRGGLEK DWSKAPF A YR F I+GC A CA+ WW+ +Q L A
Sbjct: 182 ADDWATRGGLEKTDWSKAPFIASYRSFHIDGCEASVEAKFCATQGARWWDQKEFQDLDAF 241
Query: 177 EARRYRWVRLNHMIYDYCTDKSRYPVPPPEC 207
+ RR WVR + IY+YCTD+SRYP PPEC
Sbjct: 242 QYRRLSWVRQKYTIYNYCTDRSRYPSMPPEC 272
>pdb|2VH9|A Chain A, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
pdb|2VH9|B Chain B, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
Length = 290
Score = 179 bits (455), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 89/207 (42%), Positives = 124/207 (59%), Gaps = 8/207 (3%)
Query: 3 IKLVPGDSAGTVTAFYMNSNTE--NVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQR 60
IKL G +AG +T+FY+++N + DE+D EFLG G+PYT+QTN++ G GDRE R
Sbjct: 90 IKLQSGYTAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDREMR 149
Query: 61 VNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADD 120
++LWFDP DYH Y I W I+F+VDDVPIR Y A FP+ +P+ VY ++W+A
Sbjct: 150 IHLWFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPL-RPLWVYGSVWDASS 208
Query: 121 WATRGGLEKIDWSKAPFYAYYRDFDIEGCPVPGPANCASNPGNWWEANNYQALTAMEARR 180
WAT G K D+ PF Y DF + C V ++C NP + + Y L+ +
Sbjct: 209 WATENGKYKADYRYQPFVGKYEDFKLGSCTVEAASSC--NPAS---VSPYGQLSQQQVAA 263
Query: 181 YRWVRLNHMIYDYCTDKSRYPVPPPEC 207
WV+ N+M+Y+YC D +R PEC
Sbjct: 264 MEWVQKNYMVYNYCDDPTRDHTLTPEC 290
>pdb|2UWB|A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
pdb|2UWB|B Chain B, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
Length = 267
Score = 179 bits (455), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 89/207 (42%), Positives = 124/207 (59%), Gaps = 8/207 (3%)
Query: 3 IKLVPGDSAGTVTAFYMNSNTE--NVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQR 60
IKL G +AG +T+FY+++N + DE+D EFLG G+PYT+QTN++ G GDRE R
Sbjct: 67 IKLQSGYTAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDREMR 126
Query: 61 VNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADD 120
++LWFDP DYH Y I W I+F+VDDVPIR Y A FP+ +P+ VY ++W+A
Sbjct: 127 IHLWFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPL-RPLWVYGSVWDASS 185
Query: 121 WATRGGLEKIDWSKAPFYAYYRDFDIEGCPVPGPANCASNPGNWWEANNYQALTAMEARR 180
WAT G K D+ PF Y DF + C V ++C NP + + Y L+ +
Sbjct: 186 WATENGKYKADYRYQPFVGKYEDFKLGSCTVEAASSC--NPAS---VSPYGQLSQQQVAA 240
Query: 181 YRWVRLNHMIYDYCTDKSRYPVPPPEC 207
WV+ N+M+Y+YC D +R PEC
Sbjct: 241 MEWVQKNYMVYNYCDDPTRDHTLTPEC 267
>pdb|2UWC|A Chain A, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
pdb|2UWC|B Chain B, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
Length = 271
Score = 174 bits (440), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 90/212 (42%), Positives = 124/212 (58%), Gaps = 13/212 (6%)
Query: 3 IKLVPGDSAGTVTAFYMNSNTE--NVRDELDFEFLGNRTGQPYTVQTNIYANGKGD---- 56
IKL G +AG +T+FY+++N + DE+D EFLG G+PYT+QTN++ G GD
Sbjct: 66 IKLQSGYTAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNII 125
Query: 57 -REQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTL 115
RE R++LWFDP DYH Y I W I+F+VDDVPIR Y A FP+ +PM VY ++
Sbjct: 126 GRELRIHLWFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPL-RPMWVYGSV 184
Query: 116 WEADDWATRGGLEKIDWSKAPFYAYYRDFDIEGCPVPGPANCASNPGNWWEANNYQALTA 175
W+A WAT G K D+ PF Y DF + C V ++C NP + + Y L+
Sbjct: 185 WDASSWATENGKYKADYRYQPFVGKYEDFKLGSCTVEAASSC--NPAS---VSPYGQLSQ 239
Query: 176 MEARRYRWVRLNHMIYDYCTDKSRYPVPPPEC 207
+ WV+ N+M+Y+YC D +R PEC
Sbjct: 240 QQVAAMEWVQKNYMVYNYCDDPTRDHTLTPEC 271
>pdb|2UWA|A Chain A, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|B Chain B, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|C Chain C, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
Length = 274
Score = 173 bits (438), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 89/212 (41%), Positives = 124/212 (58%), Gaps = 13/212 (6%)
Query: 3 IKLVPGDSAGTVTAFYMNSNTE--NVRDELDFEFLGNRTGQPYTVQTNIYANGKGD---- 56
IKL G +AG +T+FY+++N + DE+D EFLG G+PYT+QTN++ G GD
Sbjct: 69 IKLQSGYTAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNII 128
Query: 57 -REQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTL 115
RE R++LWFDP DYH Y I W I+F+VDDVPIR Y A FP+ +P+ VY ++
Sbjct: 129 GREMRIHLWFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPL-RPLWVYGSV 187
Query: 116 WEADDWATRGGLEKIDWSKAPFYAYYRDFDIEGCPVPGPANCASNPGNWWEANNYQALTA 175
W+A WAT G K D+ PF Y DF + C V ++C NP + + Y L+
Sbjct: 188 WDASSWATENGKYKADYRYQPFVGKYEDFKLGSCTVEAASSC--NPAS---VSPYGQLSQ 242
Query: 176 MEARRYRWVRLNHMIYDYCTDKSRYPVPPPEC 207
+ WV+ N+M+Y+YC D +R PEC
Sbjct: 243 QQVAAMEWVQKNYMVYNYCDDPTRDHTLTPEC 274
>pdb|3D6E|A Chain A, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
pdb|3D6E|B Chain B, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
Length = 201
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 70/145 (48%), Gaps = 19/145 (13%)
Query: 2 KIKLVPGDSAGTVTAFYMNSNTENVR--DELDFEFLGNRTGQPYTVQTNIYANGKGDREQ 59
++ + P + G V+AFY ++ + DE+D EFLG T + VQ N Y NG G+ E+
Sbjct: 63 EVNMKPAKNVGIVSAFYTSTGPTDGTPWDEIDIEFLGKDTTK---VQFNYYTNGVGNHEK 119
Query: 60 RVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEA- 118
VNL FD A YH Y W + I +YVD K++ P P +Y +LW
Sbjct: 120 IVNLGFDAANSYHTYAFDWQPNSIKWYVDG----QLKHTATTQIPQT-PGKIYMSLWAGA 174
Query: 119 --DDWATRGGLEKIDWSKAPFYAYY 141
D+W G + P YA+Y
Sbjct: 175 GVDEWL--GSYNGV----TPLYAHY 193
>pdb|1GBG|A Chain A, Bacillus Licheniformis Beta-Glucanase
Length = 214
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 67/145 (46%), Gaps = 19/145 (13%)
Query: 2 KIKLVPGDSAGTVTAFYMNSNTENVR--DELDFEFLGNRTGQPYTVQTNIYANGKGDREQ 59
++ + P + G V++F+ + + DE+D EFLG T + VQ N Y NG G+ E+
Sbjct: 76 EVNMKPAKNVGIVSSFFTYTGPTDGTPWDEIDIEFLGKDTTK---VQFNYYTNGVGNHEK 132
Query: 60 RVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEA- 118
VNL FD A YH Y W + I +YVD K++ P P + LW
Sbjct: 133 IVNLGFDAANSYHTYAFDWQPNSIKWYVDG----QLKHTATTQIPQ-TPGKIMMNLWNGA 187
Query: 119 --DDWATRGGLEKIDWSKAPFYAYY 141
D+W G + P YA+Y
Sbjct: 188 GVDEWL--GSYNGV----TPLYAHY 206
>pdb|1MAC|A Chain A, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
pdb|1MAC|B Chain B, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
Length = 212
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 62/125 (49%), Gaps = 13/125 (10%)
Query: 2 KIKLVPGDSAGTVTAFYMNSNTENVR--DELDFEFLGNRTGQPYTVQTNIYANGKGDREQ 59
++ + P + G V++F+ + + DE+D EFLG T + VQ N Y NG G E+
Sbjct: 74 EVSMKPAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNGVGGHEK 130
Query: 60 RVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEA- 118
++L FD + +H Y W +I +YVD V K++ A P + P + LW
Sbjct: 131 VISLGFDASKGFHTYAFDWQPGYIKWYVDG----VLKHTATANIP-STPGKIMMNLWNGT 185
Query: 119 --DDW 121
DDW
Sbjct: 186 GVDDW 190
>pdb|1CPN|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 208
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 62/125 (49%), Gaps = 13/125 (10%)
Query: 2 KIKLVPGDSAGTVTAFYMNSNTENVR--DELDFEFLGNRTGQPYTVQTNIYANGKGDREQ 59
++ + P + G V++F+ + + DE+D EFLG T + VQ N Y NG G E+
Sbjct: 18 EVSMKPAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNGVGGHEK 74
Query: 60 RVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEA- 118
++L FD + +H Y W +I +YVD V K++ A P + P + LW
Sbjct: 75 VISLGFDASKGFHTYAFDWQPGYIKWYVDG----VLKHTATANIP-STPGKIMMNLWNGT 129
Query: 119 --DDW 121
DDW
Sbjct: 130 GVDDW 134
>pdb|1BYH|A Chain A, Molecular And Active-Site Structure Of A Bacillus
(1-3,1-4)- Beta-Glucanase
pdb|1GLH|A Chain A, Cation Binding To A Bacillus (1,3-1,4)-Beta-Glucanase.
Geometry, Affinity And Effect On Protein Stability
pdb|2AYH|A Chain A, Crystal And Molecular Structure At 1.6 Angstroms
Resolution Of The Hybrid Bacillus
Endo-1,3-1,4-Beta-D-Glucan 4- Glucanohydrolase H(A16-M)
Length = 214
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 62/125 (49%), Gaps = 13/125 (10%)
Query: 2 KIKLVPGDSAGTVTAFYMNSNTENVR--DELDFEFLGNRTGQPYTVQTNIYANGKGDREQ 59
++ + P + G V++F+ + + DE+D EFLG T + VQ N Y NG G E+
Sbjct: 76 EVSMKPAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNGVGGHEK 132
Query: 60 RVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEA- 118
++L FD + +H Y W +I +YVD V K++ A P + P + LW
Sbjct: 133 VISLGFDASKGFHTYAFDWQPGYIKWYVDG----VLKHTATANIP-STPGKIMMNLWNGT 187
Query: 119 --DDW 121
DDW
Sbjct: 188 GVDDW 192
>pdb|1AXK|A Chain A, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
pdb|1AXK|B Chain B, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
Length = 394
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 62/125 (49%), Gaps = 13/125 (10%)
Query: 2 KIKLVPGDSAGTVTAFYMNSNTENVR--DELDFEFLGNRTGQPYTVQTNIYANGKGDREQ 59
++ + P + G V++F+ + + DE+D EFLG T + VQ N Y NG G E+
Sbjct: 18 EVSMKPAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNGVGGHEK 74
Query: 60 RVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEA- 118
++L FD + +H Y W +I +YVD V K++ A P + P + LW
Sbjct: 75 VISLGFDASKGFHTYAFDWQPGYIKWYVDG----VLKHTATANIP-STPGKIMMNLWNGT 129
Query: 119 --DDW 121
DDW
Sbjct: 130 GVDDW 134
>pdb|1CPM|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 214
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 62/125 (49%), Gaps = 13/125 (10%)
Query: 2 KIKLVPGDSAGTVTAFYMNSNTENVR--DELDFEFLGNRTGQPYTVQTNIYANGKGDREQ 59
++ + P + G V++F+ + + DE+D EFLG T + VQ N Y NG G E+
Sbjct: 18 EVSMKPAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNGVGGHEK 74
Query: 60 RVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEA- 118
++L FD + +H Y W +I +YVD V K++ A P + P + LW
Sbjct: 75 VISLGFDASKGFHTYAFDWQPGYIKWYVDG----VLKHTATANIP-STPGKIMMNLWNGT 129
Query: 119 --DDW 121
DDW
Sbjct: 130 GVDDW 134
>pdb|3O5S|A Chain A, Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanase From
Bacillus Subtilis (Strain 168)
Length = 238
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Query: 2 KIKLVPGDSAGTVTAFYMNSNTENVR--DELDFEFLGNRTGQPYTVQTNIYANGKGDREQ 59
++++ P + G V++F+ + + DE+D EFLG T + VQ N Y NG G+ E+
Sbjct: 100 EVRMKPAKNTGIVSSFFTYTGPTDGTPWDEIDIEFLGKDTTK---VQFNYYTNGAGNHEK 156
Query: 60 RVNLWFDPAADYHLYTILWNHHHIVFYVD 88
V+L FD A YH Y W + I +YVD
Sbjct: 157 IVDLGFDAANAYHTYAFDWQPNSIKWYVD 185
>pdb|1U0A|A Chain A, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|B Chain B, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|C Chain C, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|D Chain D, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
Length = 214
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 13/125 (10%)
Query: 2 KIKLVPGDSAGTVTAFYMNSNTENVR--DELDFEFLGNRTGQPYTVQTNIYANGKGDREQ 59
++ + P + G V++F+ + + D++D +FLG T + VQ N Y NG G E+
Sbjct: 76 EVSMKPAKNTGIVSSFFTYTGPAHGTQWDQIDIQFLGKDTTK---VQFNYYTNGVGGHEK 132
Query: 60 RVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEA- 118
++L FD + +H Y W +I +YVD V K++ A P + P + LW
Sbjct: 133 VISLGFDASKGFHTYAFDWQPGYIKWYVDG----VLKHTATANIP-STPGKIMMNLWNGT 187
Query: 119 --DDW 121
DDW
Sbjct: 188 GVDDW 192
>pdb|1AJK|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
pdb|1AJK|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
Length = 214
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 11/97 (11%)
Query: 28 DELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYV 87
DE+D EFLG T + VQ N Y NG G E+ ++L FD + +H Y W +I +YV
Sbjct: 21 DEIDIEFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYV 77
Query: 88 DDVPIRVYKNSGRAPFPMNQPMGVYSTLWEA---DDW 121
D V K++ A P + P + LW DDW
Sbjct: 78 DG----VLKHTATANIP-STPGKIMMNLWNGTGVDDW 109
>pdb|3I4I|A Chain A, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
pdb|3I4I|B Chain B, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
Length = 234
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 2 KIKLVPGDSAGTVTAFYMNSNTENVR--DELDFEFLGNRTGQPYTVQTNIYANGKGDREQ 59
++++ P + G V++F+ + + DE+D EFLG T + VQ N Y N G+ E
Sbjct: 96 QVRMKPAKNPGIVSSFFTYTGPVHGTPWDEIDIEFLGKDTTK---VQFNYYTNSAGNHEY 152
Query: 60 RVNLWFDPAADYHLYTILWNHHHIVFYVD 88
+L FD + D+H+Y W ++I + VD
Sbjct: 153 IYDLRFDASEDFHIYAFNWQPNYIAWLVD 181
>pdb|1AJO|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
pdb|1AJO|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
Length = 214
Score = 34.3 bits (77), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Query: 55 GDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYST 114
G E+ ++L FD + +H Y W +I +YVD V K++ A P + P +
Sbjct: 2 GGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDG----VLKHTATANIP-STPGKIMMN 56
Query: 115 LWEA---DDW 121
LW DDW
Sbjct: 57 LWNGTGVDDW 66
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 2 KIKLVPGDSAGTVTAFYMNSNTENVR--DELDFEFLGNRTGQPYTVQTNIYANG 53
++ + P + G V++F+ + + DE+D EFLG T + VQ N Y NG
Sbjct: 164 EVSMKPAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNG 214
>pdb|1UPS|A Chain A, Glcnac[alpha]1-4gal Releasing Endo-[beta]-Galactosidase
From Clostridium Perfringens
pdb|1UPS|B Chain B, Glcnac[alpha]1-4gal Releasing Endo-[beta]-Galactosidase
From Clostridium Perfringens
Length = 420
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 66 DPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYS 113
DP ++YH+Y + W + FY D+ +V G + M + +Y+
Sbjct: 209 DPTSEYHIYAMEWTPTALKFYYDNELFKVI--YGSPDYEMGTILNIYT 254
>pdb|2VY0|A Chain A, The X-Ray Structure Of Endo-Beta-1,3-Glucanase From
Pyrococcus Furiosus
pdb|2VY0|B Chain B, The X-Ray Structure Of Endo-Beta-1,3-Glucanase From
Pyrococcus Furiosus
Length = 264
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 17/99 (17%)
Query: 2 KIKLVPGDSAGTVTAFYM-NSNTENVR----DELDF-EFLGNRTGQPYTVQTNIYANGKG 55
+IKL G G AF+M SN V E+D EFLG+ +P T+ ++ G
Sbjct: 107 RIKLPKGK--GLWPAFWMLGSNIREVGWPNCGEIDIMEFLGH---EPRTIHGTVHGPGYS 161
Query: 56 DREQRVNLWFDPAA------DYHLYTILWNHHHIVFYVD 88
+ + P D+H++ I+W I +YVD
Sbjct: 162 GSKGITRAYTLPEGVPDFTEDFHVFGIVWYPDKIKWYVD 200
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.467
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,951,720
Number of Sequences: 62578
Number of extensions: 358319
Number of successful extensions: 669
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 623
Number of HSP's gapped (non-prelim): 21
length of query: 211
length of database: 14,973,337
effective HSP length: 95
effective length of query: 116
effective length of database: 9,028,427
effective search space: 1047297532
effective search space used: 1047297532
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)