Query 028253
Match_columns 211
No_of_seqs 276 out of 1344
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 08:38:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028253.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028253hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03161 Probable xyloglucan e 100.0 1.2E-74 2.6E-79 506.2 25.2 209 1-210 74-289 (291)
2 cd02176 GH16_XET Xyloglucan en 100.0 1.7E-74 3.8E-79 501.1 25.9 206 1-207 53-263 (263)
3 cd02183 GH16_fungal_CRH1_trans 100.0 6.7E-39 1.5E-43 269.5 19.7 135 1-148 52-201 (203)
4 cd02175 GH16_lichenase lichena 100.0 2.6E-32 5.6E-37 230.0 19.4 133 1-147 73-211 (212)
5 cd08023 GH16_laminarinase_like 100.0 1.7E-28 3.8E-33 208.7 18.1 137 1-147 84-235 (235)
6 cd02178 GH16_beta_agarase Beta 100.0 1.4E-28 3.1E-33 213.0 17.0 141 1-147 103-257 (258)
7 cd00413 Glyco_hydrolase_16 gly 100.0 4E-28 8.7E-33 202.0 18.4 131 1-147 72-210 (210)
8 PF00722 Glyco_hydro_16: Glyco 100.0 5.6E-28 1.2E-32 197.7 16.0 128 1-145 52-185 (185)
9 cd02182 GH16_Strep_laminarinas 99.9 8.6E-27 1.9E-31 202.0 15.4 140 1-147 92-258 (259)
10 cd02177 GH16_kappa_carrageenas 99.9 9E-26 2E-30 197.1 17.7 135 1-147 97-268 (269)
11 cd02180 GH16_fungal_KRE6_gluca 99.9 1.7E-25 3.6E-30 197.7 15.4 142 1-147 84-294 (295)
12 cd08024 GH16_CCF Coelomic cyto 99.9 6.5E-24 1.4E-28 190.3 15.2 119 1-122 119-279 (330)
13 cd02179 GH16_beta_GRP beta-1,3 99.9 1.3E-23 2.8E-28 187.8 16.3 116 1-119 116-268 (321)
14 COG2273 SKN1 Beta-glucanase/Be 99.9 9.5E-22 2.1E-26 177.6 14.6 136 1-144 123-262 (355)
15 PF06955 XET_C: Xyloglucan end 99.9 1.5E-22 3.2E-27 135.0 4.5 50 157-207 1-51 (51)
16 PF03935 SKN1: Beta-glucan syn 99.0 9.3E-10 2E-14 103.1 9.8 86 68-160 365-465 (504)
17 cd02181 GH16_fungal_Lam16A_glu 98.9 2.1E-09 4.6E-14 94.9 7.7 113 1-122 85-251 (293)
18 PF09264 Sial-lect-inser: Vibr 91.9 0.35 7.6E-06 40.4 5.1 28 69-96 92-121 (198)
19 PF13385 Laminin_G_3: Concanav 91.3 0.71 1.5E-05 34.7 6.1 67 67-149 83-149 (157)
20 PF10287 DUF2401: Putative TOS 90.1 1.3 2.8E-05 38.4 7.0 74 2-81 106-207 (235)
21 smart00560 LamGL LamG-like jel 90.0 3.2 6.9E-05 31.9 8.8 70 66-150 58-129 (133)
22 smart00210 TSPN Thrombospondin 87.8 14 0.00029 30.2 15.2 29 68-96 116-144 (184)
23 smart00159 PTX Pentraxin / C-r 86.7 17 0.00037 30.2 16.6 73 67-148 88-162 (206)
24 PF06439 DUF1080: Domain of Un 83.2 3.5 7.5E-05 32.9 5.8 32 67-98 125-156 (185)
25 cd00110 LamG Laminin G domain; 81.9 20 0.00043 27.1 13.5 72 68-146 79-150 (151)
26 cd00152 PTX Pentraxins are pla 80.6 31 0.00067 28.5 16.6 73 67-148 88-162 (201)
27 PF02973 Sialidase: Sialidase, 71.4 59 0.0013 27.3 9.9 70 69-150 103-176 (190)
28 PF09224 DUF1961: Domain of un 70.7 19 0.00041 30.9 6.8 59 69-146 159-218 (218)
29 PF03935 SKN1: Beta-glucan syn 69.1 1.9 4.1E-05 41.3 0.6 22 1-22 204-226 (504)
30 smart00282 LamG Laminin G doma 53.0 69 0.0015 23.9 6.7 28 68-95 61-88 (135)
31 PF06832 BiPBP_C: Penicillin-B 52.2 19 0.00042 25.7 3.2 36 82-117 44-79 (89)
32 PF02210 Laminin_G_2: Laminin 50.8 91 0.002 22.4 10.1 75 68-148 53-127 (128)
33 PF14099 Polysacc_lyase: Polys 44.4 1E+02 0.0023 25.3 7.0 71 66-146 149-224 (224)
34 KOG1834 Calsyntenin [Extracell 40.1 37 0.0008 33.9 4.0 55 68-127 441-495 (952)
35 PF07691 PA14: PA14 domain; I 35.0 65 0.0014 24.3 4.0 29 67-96 57-85 (145)
36 KOG3516 Neurexin IV [Signal tr 33.9 6.4E+02 0.014 27.3 12.6 87 2-98 205-295 (1306)
37 KOG4352 Fas-mediated apoptosis 33.6 91 0.002 25.5 4.6 50 45-95 73-128 (187)
38 KOG1277 Endosomal membrane pro 31.6 1E+02 0.0022 29.8 5.2 18 69-86 191-208 (593)
39 PF00354 Pentaxin: Pentaxin fa 27.2 3.6E+02 0.0077 22.2 10.8 72 67-147 82-155 (195)
40 PRK11546 zraP zinc resistance 24.1 56 0.0012 26.2 1.9 25 163-188 35-59 (143)
41 cd00070 GLECT Galectin/galacto 23.5 2.8E+02 0.0061 20.8 5.8 68 27-97 26-105 (127)
42 PF07154 DUF1392: Protein of u 21.4 3.6E+02 0.0078 21.8 6.0 78 2-80 32-126 (150)
43 PF02057 Glyco_hydro_59: Glyco 20.9 3.2E+02 0.007 27.4 6.8 58 68-148 610-667 (669)
44 PF13510 Fer2_4: 2Fe-2S iron-s 20.3 1.3E+02 0.0029 21.2 3.1 18 81-98 2-19 (82)
No 1
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
Probab=100.00 E-value=1.2e-74 Score=506.16 Aligned_cols=209 Identities=53% Similarity=1.013 Sum_probs=194.6
Q ss_pred CEEEecCCCCCceEEEEEEecCCCCCCCcEEEEEcCCCCCCCcEEEEEEEeCCCCCcceeEecCCCCCCCcEEEEEEEcC
Q 028253 1 MKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNH 80 (211)
Q Consensus 1 ~riKl~~~~s~G~v~Afwl~s~~~~~~dEIDiE~lG~~~g~p~~~~tn~~~~g~~~~~~~~~l~fdp~~dFH~Y~i~W~~ 80 (211)
||||||+|+++|+||||||++.++. ||||||||||+++++|+++|||+|.+|.+++++++.++|||+++||+|+|+|+|
T Consensus 74 ~riKLp~G~saG~v~AFwl~s~~~~-~dEIDiEfLG~~~g~~~~vqtN~y~~g~g~re~~~~l~fDpt~dFHtYsI~Wtp 152 (291)
T PLN03161 74 MLIKLVPGNSAGTVTAYYLSSTGSR-HDEIDFEFLGNVSGQPYTIHTNIYTQGNGSREQQFRPWFDPTADFHNYTIHWNP 152 (291)
T ss_pred EEEEeCCCCCCCeEEEEEecCCCCC-CCeEEEEecCCCCCCceEEEeceEeCCcCCcceeccccCCCccCcEEEEEEEch
Confidence 6899999999999999999997666 999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEECCeEEEEEeCCCC--CCCCCCCCceEEEeeeeCCCcccCCCCcccCCCCCCEEEEEeEEEEeecCCCC---CC
Q 028253 81 HHIVFYVDDVPIRVYKNSGR--APFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDIEGCPVPG---PA 155 (211)
Q Consensus 81 ~~I~fyVDg~~vr~~~~~~~--~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~~v~v~~c~~~~---~~ 155 (211)
++|+|||||++||++++.+. .+||+.+||+|++|||+|++|||+||++||||+++||+|.|++|+++||.+.+ ..
T Consensus 153 ~~I~wyVDG~~iRt~~~~~~~g~~yP~~~pM~i~~siW~g~~wAt~gG~~kidw~~aPf~a~~~~f~~~~C~~~~~~~~~ 232 (291)
T PLN03161 153 SEVVWYVDGTPIRVFRNYENEGIAYPNKQGMRVYSSLWNADNWATQGGRVKIDWTLAPFVARGRRFRARACKWNGPVSIK 232 (291)
T ss_pred hhEEEEECCEEEEEEEcccccCCcCCCccceEEEEeeecCCCcccCCCceeccCCcCCeeEEeeeEEEEeeccCCCCCcc
Confidence 99999999999999987654 67998899999999999999999999999999999999999999999998732 34
Q ss_pred cCCCC-CCCcccccCcccCCHHHHHHHHHHhhcCeEeecCcCCCCCCC-CCCCCcCC
Q 028253 156 NCASN-PGNWWEANNYQALTAMEARRYRWVRLNHMIYDYCTDKSRYPV-PPPECLAG 210 (211)
Q Consensus 156 ~C~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~YdYC~D~~r~~~-~p~eC~~~ 210 (211)
.|.+. +..||+++.|++|+++|+++|+|||+||||||||+|++|||+ +||||.++
T Consensus 233 ~c~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~m~Y~YC~D~~R~~~~~p~EC~~~ 289 (291)
T PLN03161 233 QCADPTPSNWWTSPSYSQLTNAQLTQMKKVRDNFMIYDYCKDTKRFNGVMPPECFKP 289 (291)
T ss_pred ccCCCCccccccCccccCCCHHHHHHHHHHHhCcEEEeccCCCCcCCCCcCcccCCC
Confidence 79754 467999989999999999999999999999999999999998 89999764
No 2
>cd02176 GH16_XET Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16. Xyloglucan endotransglycosylases (XETs) cleave and religate xyloglucan polymers in plant cell walls via a transglycosylation mechanism. Xyloglucan is a soluble hemicellulose with a backbone of beta-1,4-linked glucose units, partially substituted with alpha-1,6-linked xylopyranose branches. It binds noncovalently to cellulose, cross-linking the adjacent cellulose microfibrils, giving it a key structural role as a matrix polymer. Therefore, XET plays an important role in all plant processes that require cell wall remodeling.
Probab=100.00 E-value=1.7e-74 Score=501.12 Aligned_cols=206 Identities=64% Similarity=1.257 Sum_probs=193.2
Q ss_pred CEEEecCCCCCceEEEEEEecCC-CCCCCcEEEEEcCCCCCCCcEEEEEEEeCCCCCcceeEecCCCCCCCcEEEEEEEc
Q 028253 1 MKIKLVPGDSAGTVTAFYMNSNT-ENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWN 79 (211)
Q Consensus 1 ~riKl~~~~s~G~v~Afwl~s~~-~~~~dEIDiE~lG~~~g~p~~~~tn~~~~g~~~~~~~~~l~fdp~~dFH~Y~i~W~ 79 (211)
||||||+|+++|+||||||++++ |. ++|||||+||+.+|+|+++|||+|.+|.+++++++.++|||+++||+|+|+|+
T Consensus 53 ~riKlp~g~s~G~~pAFwl~~~~wp~-~~EID~E~lGn~~g~~~~~qtnv~~~g~g~r~~~~~l~fdpt~dFHtY~i~Wt 131 (263)
T cd02176 53 MRIKLPPGDSAGTVTAFYLSSQGPDN-HDEIDFEFLGNVTGQPYTLQTNVFANGVGGREQRIYLWFDPTADFHTYSILWN 131 (263)
T ss_pred EEEEeCCCCCCCeEEEEEECCCCCCC-CCeEEEEEecccCCCceEEEEEEeCCCCCCCceeeecCCCCCCCeEEEEEEEc
Confidence 69999999899999999999998 77 99999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEECCeEEEEEeCCCC--CCCCCCCCceEEEeeeeCCCcccCCCCcccCCCCCCEEEEEeEEEEeecCC-CCCCc
Q 028253 80 HHHIVFYVDDVPIRVYKNSGR--APFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDIEGCPV-PGPAN 156 (211)
Q Consensus 80 ~~~I~fyVDg~~vr~~~~~~~--~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~~v~v~~c~~-~~~~~ 156 (211)
|++|+|||||++||++++.+. .+||+++||+|++|||+||+|||+||++|+||+++||+|.|++|+|++|.+ +....
T Consensus 132 p~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~~niW~g~~WAt~gG~~~~d~~~aPf~a~~~~~~~~~c~~~~~~~~ 211 (263)
T cd02176 132 PHQIVFYVDDVPIRVFKNNEALGVPYPSSQPMGVYASIWDGSDWATQGGRVKIDWSYAPFVASYRDFKLDGCVVDPGDSF 211 (263)
T ss_pred cceEEEEECCEEEEEEecccccCCCCCccceEEEEEeeEcCCCcccCCCcccccCCCCCeeEEEeeEEEeeeecCCCCcc
Confidence 999999999999999998654 689977999999999999999999999999999999999999999999997 34455
Q ss_pred CCCCC-CCcccccCcccCCHHHHHHHHHHhhcCeEeecCcCCCCCCCCCCCC
Q 028253 157 CASNP-GNWWEANNYQALTAMEARRYRWVRLNHMIYDYCTDKSRYPVPPPEC 207 (211)
Q Consensus 157 C~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~YdYC~D~~r~~~~p~eC 207 (211)
|.... ..||+.+.+++|+++|+++|+|||+||||||||+|++|||.+||||
T Consensus 212 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~yC~d~~r~~~~p~ec 263 (263)
T cd02176 212 SSCSCTEDWWNGSTYQQLSANQQRAMEWVRRNYMVYDYCDDRKRYPVPPPEC 263 (263)
T ss_pred ccCCCccccccccccccCCHHHHHHHHHHHHCCEEEecCCCCCcCCCCcCCC
Confidence 75443 6799999999999999999999999999999999999999999999
No 3
>cd02183 GH16_fungal_CRH1_transglycosylase glycosylphosphatidylinositol-glucanosyltransferase. Group of fungal GH16 members related to Saccharomyces cerevisiae Crh1p. Chr1p and Crh2p are transglycosylases that are required for the linkage of chitin to beta(1-3)glucose branches of beta(1-6)glucan, an important step in the assembly of new cell wall. Both have been shown to be glycosylphosphatidylinositol (GPI)-anchored. A third homologous protein, Crr1p, functions in the formation of the spore wall. They belongs to the family 16 of glycosyl hydrolases that includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=6.7e-39 Score=269.51 Aligned_cols=135 Identities=31% Similarity=0.662 Sum_probs=120.6
Q ss_pred CEEEecCCCCCceEEEEEEecCCCCCCCcEEEEEcCCCCCCCcEEEEEEEeCCCC---CcceeEecCCCCCCCcEEEEEE
Q 028253 1 MKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKG---DREQRVNLWFDPAADYHLYTIL 77 (211)
Q Consensus 1 ~riKl~~~~s~G~v~Afwl~s~~~~~~dEIDiE~lG~~~g~p~~~~tn~~~~g~~---~~~~~~~l~fdp~~dFH~Y~i~ 77 (211)
||||||.+ +|+||||||++++ ++|||||++|++ +..+|+|++.+|.. ++++.+.++++++++||+|+|+
T Consensus 52 aR~Klp~g--~G~wpAfWl~~~~---~gEIDIE~~G~~---~~~~~tn~~~~g~~~~~~~~~~~~~~~~~~~dFHtY~ve 123 (203)
T cd02183 52 VTMKAAPG--QGIVSSFVLQSDD---LDEIDWEWVGGD---LTQVQTNYFGKGNTTTYDRGGYHPVPNPQTEEFHTYTID 123 (203)
T ss_pred EEEEecCC--CeEEEEEEEECCC---CCEEEEEecCCC---CCEEEeEEECCCCCCCCCCceEeeCCCCCCcCcEEEEEE
Confidence 68999998 9999999999987 899999999975 57899999987754 4556778889999999999999
Q ss_pred EcCCeEEEEECCeEEEEEeCCC---CCCCCCCCCceEEEeeeeCCC---------cccCCCCcccCCCCCCEEEEEeEEE
Q 028253 78 WNHHHIVFYVDDVPIRVYKNSG---RAPFPMNQPMGVYSTLWEADD---------WATRGGLEKIDWSKAPFYAYYRDFD 145 (211)
Q Consensus 78 W~~~~I~fyVDg~~vr~~~~~~---~~~~P~~~Pm~l~lnlW~gg~---------Wat~GG~~~~d~~~~Pf~a~~~~v~ 145 (211)
|+|+.|+|||||+++|++++.+ ...|| ++||+|+||+|.||+ || ||. +||+.+||+|.||+|+
T Consensus 124 Wtpd~I~~yVDG~~v~~~~~~~~~~~~~~p-~~P~~l~ln~W~gg~~~~~~g~~~Wa--Gg~--~d~~~~P~~~~vd~v~ 198 (203)
T cd02183 124 WTKDRITWYIDGKVVRTLTKADTTGGYGYP-QTPMRLQIGIWAGGDPSNAPGTIEWA--GGE--TDYDKGPFTMYVKSVT 198 (203)
T ss_pred EecCEEEEEECCEEEEEEehhhcccCCCCC-CCCcEEEEEEecCCCccccCCcccCC--CCc--cCCCCCCEEEEEEEEE
Confidence 9999999999999999998754 26799 899999999999985 99 775 9999999999999999
Q ss_pred Eee
Q 028253 146 IEG 148 (211)
Q Consensus 146 v~~ 148 (211)
|..
T Consensus 199 v~~ 201 (203)
T cd02183 199 VTD 201 (203)
T ss_pred EEe
Confidence 974
No 4
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=100.00 E-value=2.6e-32 Score=229.98 Aligned_cols=133 Identities=32% Similarity=0.636 Sum_probs=115.0
Q ss_pred CEEEecCCCCCceEEEEEEecCC---CCCCCcEEEEEcCCCCCCCcEEEEEEEeCCCCCcceeEecCCCCCCCcEEEEEE
Q 028253 1 MKIKLVPGDSAGTVTAFYMNSNT---ENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTIL 77 (211)
Q Consensus 1 ~riKl~~~~s~G~v~Afwl~s~~---~~~~dEIDiE~lG~~~g~p~~~~tn~~~~g~~~~~~~~~l~fdp~~dFH~Y~i~ 77 (211)
||||++.+ +|+|+||||+++. .. ++|||||++|++. ..+++|+|.+|.++.+..+.++++++++||+|+|+
T Consensus 73 ar~k~~~~--~G~~~Afwl~~~~~~~~~-~~EIDiE~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y~v~ 146 (212)
T cd02175 73 VRMKPAKG--SGVVSSFFTYTGPYDGDP-HDEIDIEFLGKDT---TKVQFNYYTNGVGGHEKLIDLGFDASEGFHTYAFE 146 (212)
T ss_pred EEEEcCCC--CeEEEEEEEEecCCCCCC-CCEEEEEEccCCC---CEeEEEEECCCCCCCceEEeCCCCcccccEEEEEE
Confidence 58898887 9999999999752 33 7999999999864 47899999888776666778889999999999999
Q ss_pred EcCCeEEEEECCeEEEEEeCCCCCCCCCCCCceEEEeeeeCC---CcccCCCCcccCCCCCCEEEEEeEEEEe
Q 028253 78 WNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEAD---DWATRGGLEKIDWSKAPFYAYYRDFDIE 147 (211)
Q Consensus 78 W~~~~I~fyVDg~~vr~~~~~~~~~~P~~~Pm~l~lnlW~gg---~Wat~GG~~~~d~~~~Pf~a~~~~v~v~ 147 (211)
|+|++|+|||||+++++++..+ ..+| ++||+|++|+|.|+ +|+ |. ++. .+|+.|+||+|||.
T Consensus 147 W~~~~i~~yvDg~~v~~~~~~~-~~~p-~~p~~i~~n~w~~~~~~~W~---G~--~~~-~~p~~~~vd~vr~~ 211 (212)
T cd02175 147 WEPDSIRWYVDGELVHEATATD-PNIP-DTPGKIMMNLWPGDGVDDWL---GP--FDG-GTPLTAEYDWVSYT 211 (212)
T ss_pred EeCCEEEEEECCEEEEEEcCcc-CCCC-CCCcEEEEEEEcCCCCCCcC---Cc--CCC-CCCeEEEEEEEEEe
Confidence 9999999999999999998643 4688 89999999999985 598 54 666 88999999999986
No 5
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=99.96 E-value=1.7e-28 Score=208.70 Aligned_cols=137 Identities=27% Similarity=0.438 Sum_probs=112.0
Q ss_pred CEEEecCCCCCceEEEEEEecCC------CCCCCcEEE-EEcCCCCCCCcEEEEEEEeCCCC----CcceeEecCC-CCC
Q 028253 1 MKIKLVPGDSAGTVTAFYMNSNT------ENVRDELDF-EFLGNRTGQPYTVQTNIYANGKG----DREQRVNLWF-DPA 68 (211)
Q Consensus 1 ~riKl~~~~s~G~v~Afwl~s~~------~~~~dEIDi-E~lG~~~g~p~~~~tn~~~~g~~----~~~~~~~l~f-dp~ 68 (211)
||||||.+ +|++|||||++++ |. ++|||| |++|+. +..+++++|..+.. ..+..+.+.. +.+
T Consensus 84 ~r~k~~~~--~G~~pafWl~~~~~~~~~w~~-~~EIDI~E~~g~~---~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~ 157 (235)
T cd08023 84 ARAKLPKG--QGTWPAFWMLGENIKYVGWPA-SGEIDIMEYVGNE---PNTVYGTLHGGATNDGNNGSGGSYTLPTDDLS 157 (235)
T ss_pred EEEEccCC--CCceeEEEEcCCCCCCCCCCC-CCcceeEecCCCC---CCeEEEEEECCCCCCCCCcccccEECCCCCcC
Confidence 68999988 9999999999875 34 789998 999986 45788999877653 2344455555 789
Q ss_pred CCcEEEEEEEcCCeEEEEECCeEEEEEeCCCC---CCCCCCCCceEEEeeeeCCCcccCCCCcccCCCCCCEEEEEeEEE
Q 028253 69 ADYHLYTILWNHHHIVFYVDDVPIRVYKNSGR---APFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFD 145 (211)
Q Consensus 69 ~dFH~Y~i~W~~~~I~fyVDg~~vr~~~~~~~---~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~~v~ 145 (211)
++||+|+|+|+|++|+|||||++|+++++... ..+|+++||+|+||++.|++|+ |.. ..-...|..|.||+||
T Consensus 158 ~~fHtY~~~W~p~~i~~yvDG~~v~~~~~~~~~~~~~~~~~~p~~liln~~~gg~w~---g~~-~~~~~~p~~~~VDyVr 233 (235)
T cd08023 158 DDFHTYAVEWTPDKITFYVDGKLYFTYTNPNTDNGGQWPFDQPFYLILNLAVGGNWP---GPP-DDDTPFPATMEVDYVR 233 (235)
T ss_pred CCcEEEEEEEECCEEEEEECCEEEEEEcccccCCcccCCCCCCcEEEEEEEEcCCCC---CCC-CCCCCCCCEEEEEEEE
Confidence 99999999999999999999999999987543 2356689999999999999999 531 3446679999999999
Q ss_pred Ee
Q 028253 146 IE 147 (211)
Q Consensus 146 v~ 147 (211)
|.
T Consensus 234 vy 235 (235)
T cd08023 234 VY 235 (235)
T ss_pred EC
Confidence 84
No 6
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=99.96 E-value=1.4e-28 Score=213.02 Aligned_cols=141 Identities=21% Similarity=0.254 Sum_probs=107.1
Q ss_pred CEEEecCCCCCceEEEEEEecCC-CCCCCcEEE-EEcCCCCC--CCcEEEEEEEeCCCC-----Cc---ceeEecCCCCC
Q 028253 1 MKIKLVPGDSAGTVTAFYMNSNT-ENVRDELDF-EFLGNRTG--QPYTVQTNIYANGKG-----DR---EQRVNLWFDPA 68 (211)
Q Consensus 1 ~riKl~~~~s~G~v~Afwl~s~~-~~~~dEIDi-E~lG~~~g--~p~~~~tn~~~~g~~-----~~---~~~~~l~fdp~ 68 (211)
||||||.+ . ++|||||++.+ +. ++|||| |++|+..+ .+..+++++|..+.+ .+ ...+.+.++.+
T Consensus 103 aR~K~p~~--~-~~pAfW~~~~~~~~-~gEIDI~E~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (258)
T cd02178 103 ARAKASNL--P-MSSAFWLLSDTKDS-TTEIDILEHYGGDREEWFATRMNSNTHVFIRDPEQDYQPKDDGSWYYNPTELA 178 (258)
T ss_pred EEEEcCCC--C-ccceEEEccCCCCC-CCcEEhhhccCCCCCccccceeeeeEEEccCCCCCCccccccceeecCCCccc
Confidence 68999876 4 47999999975 44 999997 99997732 245788887643221 11 22345566778
Q ss_pred CCcEEEEEEEc-CCeEEEEECCeEEEEEeCCCC-CCCCCCCCceEEEeeeeCCCcccCCCCcccCCCCCCEEEEEeEEEE
Q 028253 69 ADYHLYTILWN-HHHIVFYVDDVPIRVYKNSGR-APFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDI 146 (211)
Q Consensus 69 ~dFH~Y~i~W~-~~~I~fyVDg~~vr~~~~~~~-~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~~v~v 146 (211)
++||+|+|+|+ |++|+|||||++++++++.+. ..+||++||+|+||++.|| |+...+.. ..-...|..|.||||||
T Consensus 179 ~~fHtY~veW~~p~~i~fyvDG~~~~~~~~~~~~~~~~f~~p~~liln~avg~-w~g~~~~~-~~~~~~p~~m~VDYVRv 256 (258)
T cd02178 179 DDFHVYGVYWKDPDTIRFYIDGVLVRTVENSEITDGTGFDQPMYIIIDTETYD-WRGEPTDE-ELADDSKNTFYVDYVRV 256 (258)
T ss_pred cCeEEEEEEEcCCCeEEEEECCEEEEEEcCcccCcCCcCCCCeEEEEEecccc-CCCCCCcc-ccCCCCCCeEEEEEEEE
Confidence 99999999999 999999999999999987543 4577899999999999998 98111121 22345699999999998
Q ss_pred e
Q 028253 147 E 147 (211)
Q Consensus 147 ~ 147 (211)
.
T Consensus 257 y 257 (258)
T cd02178 257 Y 257 (258)
T ss_pred e
Confidence 6
No 7
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=99.96 E-value=4e-28 Score=202.00 Aligned_cols=131 Identities=37% Similarity=0.615 Sum_probs=109.7
Q ss_pred CEEEecCCCCCceEEEEEEecCC---CCCCCcEEEEEcCCCCCCCcEEEEEEEeCCCC-----CcceeEecCCCCCCCcE
Q 028253 1 MKIKLVPGDSAGTVTAFYMNSNT---ENVRDELDFEFLGNRTGQPYTVQTNIYANGKG-----DREQRVNLWFDPAADYH 72 (211)
Q Consensus 1 ~riKl~~~~s~G~v~Afwl~s~~---~~~~dEIDiE~lG~~~g~p~~~~tn~~~~g~~-----~~~~~~~l~fdp~~dFH 72 (211)
+||||+.+ .|+|+||||++.+ +. .+|||||++|++ +..+++++|..+.+ .....+.+++++.++||
T Consensus 72 ar~k~~~~--~G~~~afw~~~~~~~~~~-~~EIDiE~~~~~---~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~H 145 (210)
T cd00413 72 ARAKLAGG--PGAVSAFWTYSDDDDPPD-GGEIDIEFLGRD---PTTVQTNVHWPGYGAGATTGEEKSVHLPFDPADDFH 145 (210)
T ss_pred EEEEcCCC--CceEEEEEEeCCCCCCCC-CCeEEEEecccC---CCeEEEEEecCCCCcccccccceeecCCCCCccCeE
Confidence 58888887 9999999999986 55 899999999986 45688888876543 23344556677899999
Q ss_pred EEEEEEcCCeEEEEECCeEEEEEeCCCCCCCCCCCCceEEEeeeeCCCcccCCCCcccCCCCCCEEEEEeEEEEe
Q 028253 73 LYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDIE 147 (211)
Q Consensus 73 ~Y~i~W~~~~I~fyVDg~~vr~~~~~~~~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~~v~v~ 147 (211)
+|+|+|+|+.|+|||||++++++++ ..| .+||+|+||+|.+++|+ |. .+...+|..|.||+|||.
T Consensus 146 ~Y~~~W~~~~i~~yvDG~~~~~~~~----~~p-~~p~~i~ln~~~~~~~~---~~--~~~~~~~~~~~Vd~vrvy 210 (210)
T cd00413 146 TYRVDWTPGEITFYVDGVLVATITN----QVP-DDPMNIILNLWSDGGWW---WG--GPPPGAPAYMEIDWVRVY 210 (210)
T ss_pred EEEEEEeCCEEEEEECCEEEEEECC----CCC-CCCcEEEEEEEECCCCc---cc--CCCCCCCcEEEEEEEEEC
Confidence 9999999999999999999999975 367 89999999999999998 32 344778999999999973
No 8
>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 16 GH16 from CAZY comprises enzymes with a number of known activities; lichenase (3.2.1.73 from EC); xyloglucan xyloglucosyltransferase (2.4.1.207 from EC); agarase (3.2.1.81 from EC); kappa-carrageenase (3.2.1.83 from EC); endo-beta-1,3-glucanase (3.2.1.39 from EC); endo-beta-1,3-1,4-glucanase (3.2.1.6 from EC); endo-beta-galactosidase (3.2.1.103 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DGT_A 2CL2_A 2WLQ_A 2WNE_A 2W39_A 2W52_A 3ILN_A 4DFS_A 1UMZ_A 1UN1_B ....
Probab=99.96 E-value=5.6e-28 Score=197.73 Aligned_cols=128 Identities=39% Similarity=0.710 Sum_probs=107.0
Q ss_pred CEEEecCCCCCceEEEEEEecCC--CCCCCcEEEEEcCCCCCCCcEEEEEEEeCCCCCc--ceeEecCCCCCCCcEEEEE
Q 028253 1 MKIKLVPGDSAGTVTAFYMNSNT--ENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDR--EQRVNLWFDPAADYHLYTI 76 (211)
Q Consensus 1 ~riKl~~~~s~G~v~Afwl~s~~--~~~~dEIDiE~lG~~~g~p~~~~tn~~~~g~~~~--~~~~~l~fdp~~dFH~Y~i 76 (211)
+|||++.+ .|+|+||||.+.+ +. ++|||||++|+.. ..+++|+|..+.+.. +..+.+.++++++||+|+|
T Consensus 52 ar~k~~~~--~G~~~afwl~~~~~~~~-~~EIDiE~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~y~~ 125 (185)
T PF00722_consen 52 ARIKAPPG--PGVWPAFWLTGADGWPD-GGEIDIEFLGNDP---TQVQTNVHWNGDGDSNWEKRVPLGFDPSTDFHTYGF 125 (185)
T ss_dssp EEEECSCS--TTEEEEEEEETTGSTTT-TEEEEEEEETTST---TEEEEEEEBTTBSCEEEEEEEETSSTTTTSEEEEEE
T ss_pred EEEEecCC--CceEecccccccccccc-hhhhhhhhccccc---cceeeeeeecccCCcccceeeccccCcCCCcEEEEE
Confidence 46676666 9999999997643 55 8999999999874 469999999888765 5567778899999999999
Q ss_pred EEcCCeEEEEECCeEEEEEeCCCC--CCCCCCCCceEEEeeeeCCCcccCCCCcccCCCCCCEEEEEeEEE
Q 028253 77 LWNHHHIVFYVDDVPIRVYKNSGR--APFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFD 145 (211)
Q Consensus 77 ~W~~~~I~fyVDg~~vr~~~~~~~--~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~~v~ 145 (211)
+|+|++|+|||||++++++..... .+||+..||+|.+++|.|++|++..| .|+|||||
T Consensus 126 ~W~~~~i~fyiDg~~~~~~~~~~~~~~~~P~~~~~~~~~~~w~~~~~~~~~~-----------~m~vDwvr 185 (185)
T PF00722_consen 126 EWTPDRIRFYIDGKLVRTVTNSDVPGSPYPFSTPMNLALGLWPGGDWAGPAG-----------EMEVDWVR 185 (185)
T ss_dssp EEETTEEEEEETTEEEEEEESSGSTTTCSSEEEEEEEEEEECEBTTTHSSEC-----------EEEEEEEE
T ss_pred EEecCeEEEEECCEEEEEEeccccccccCcccceeEEEEccccCCCCCCCCC-----------EEEEEeEC
Confidence 999999999999999999987643 35895599999999999999984444 58888886
No 9
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.
Probab=99.95 E-value=8.6e-27 Score=202.02 Aligned_cols=140 Identities=16% Similarity=0.139 Sum_probs=98.8
Q ss_pred CEEEecCCC---CCceEEEEEEecCC--------CCCCCcEEE-EEcCCCCCCCcEEEEEEEeC--CCCCccee-Eec-C
Q 028253 1 MKIKLVPGD---SAGTVTAFYMNSNT--------ENVRDELDF-EFLGNRTGQPYTVQTNIYAN--GKGDREQR-VNL-W 64 (211)
Q Consensus 1 ~riKl~~~~---s~G~v~Afwl~s~~--------~~~~dEIDi-E~lG~~~g~p~~~~tn~~~~--g~~~~~~~-~~l-~ 64 (211)
||||||.+. ..|+||||||++.+ |. .+|||| |..|.. +...++.++.. +...++.. ..- .
T Consensus 92 aRik~p~~~~~~~~G~wPAfWll~~~~~~~~~~WP~-~GEIDImE~~~~~---~~~~~t~H~~~~~~~~~~~~~~~~~~~ 167 (259)
T cd02182 92 ASIRLGDVPGSNQQGIWPAFWMLGDSYRGNGTNWPA-CGELDIMENVNGL---STGYGTLHCGVAPGGPCNEPTGIGAGT 167 (259)
T ss_pred EEEECCCCcccCCCCcCeeeeccCCCccCCCCCCCc-cceeeeeeccCCC---CceEEEEeeCCCCCCCCccccCcccCC
Confidence 689998753 57999999999863 55 689998 999865 33444433322 11111111 110 1
Q ss_pred CCCCCCcEEEEEEEcC-----CeEEEEECCeEEEEEeCCCC-----CCCCCCCCceEEEeeeeCCCcccCCCCcc-cCCC
Q 028253 65 FDPAADYHLYTILWNH-----HHIVFYVDDVPIRVYKNSGR-----APFPMNQPMGVYSTLWEADDWATRGGLEK-IDWS 133 (211)
Q Consensus 65 fdp~~dFH~Y~i~W~~-----~~I~fyVDg~~vr~~~~~~~-----~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~-~d~~ 133 (211)
..+.++||+|+|+|++ ++|+|||||+++++++.... .+.|+++||+|+||++.||+|+ |.+. ..-.
T Consensus 168 ~~~~~~fHtY~veW~~~~~~~~~I~~yvDG~~~~t~~~~~~~~~~~~~~~~~~p~ylIlN~avgg~w~---~~~~~~~~~ 244 (259)
T cd02182 168 RLCDTGFHTYAVEIDRTNGDAESIRWYLDGVVYHTVTGARVGDETTWQALAHHPLFIILNVAVGGNWP---GAPNGNTAT 244 (259)
T ss_pred CCCCCCcEEEEEEEccCCCCCCEEEEEECCEEEEEEehhhcCCCccccCcCCCCeEEEEEEEEeCCcC---CCCCccccc
Confidence 1245899999999997 99999999999999976421 1234589999999999999998 4321 1134
Q ss_pred CCCEEEEEeEEEEe
Q 028253 134 KAPFYAYYRDFDIE 147 (211)
Q Consensus 134 ~~Pf~a~~~~v~v~ 147 (211)
..|..|+||+|||.
T Consensus 245 ~~p~~m~VDyVRVy 258 (259)
T cd02182 245 GSGSAMEVDYVAVY 258 (259)
T ss_pred CCCceEEEEEEEEe
Confidence 57999999999986
No 10
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16. Kappa-carrageenase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of kappa-carrageenans, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Carrageenans are linear chains of galactose units linked by alternating D-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Depending on the position and number of sulfate ester modifications they are subdivided into kappa-, iota-, and lambda-carrageenases, kappa being modified once. Carrageenans form thermo-reversible gels widely used for industrial applications. Kappa-carrageenases exist in bacteria belonging to at least three phylogenetically distant branches, including pseudoalteromonas, planctomycetes, and baceroidetes. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to
Probab=99.94 E-value=9e-26 Score=197.11 Aligned_cols=135 Identities=24% Similarity=0.304 Sum_probs=100.8
Q ss_pred CEEEecC-CCCCceEEEEEEecCC---------CCCCCcEEE-EEcCCC---CCCCc----EEEEEEEeCCCCC--c---
Q 028253 1 MKIKLVP-GDSAGTVTAFYMNSNT---------ENVRDELDF-EFLGNR---TGQPY----TVQTNIYANGKGD--R--- 57 (211)
Q Consensus 1 ~riKl~~-~~s~G~v~Afwl~s~~---------~~~~dEIDi-E~lG~~---~g~p~----~~~tn~~~~g~~~--~--- 57 (211)
|||||++ + +|+||||||+++. |. ++|||| |.+|.. .+++. ++|++++.+|.+. +
T Consensus 97 aRik~~p~~--~G~wpAfW~~~~~~~~~~~~gwp~-~GEIDImE~~g~~~~~~~~~~~~~~~~H~~~~~~g~g~w~~~~~ 173 (269)
T cd02177 97 ARIKGADIF--PGVCPSFWLYSDIDYSVANEGEVV-YSEIDVVELQQFDWYHQDDIRDMDHNLHAIVKENGQGVWKRPKM 173 (269)
T ss_pred EEEECCCCC--CceEeEEEEeccCCCCcccCCCCC-CCeEEEEEEecCCccccccccccceEEEEeEecCCcccccCccc
Confidence 6899755 5 8999999999851 45 899998 888754 12233 4555555555431 1
Q ss_pred -----ceeEecCCCCCCCcEEEEEEEcCCeEEEEECCeEEEEEeCCCCCCCCCCCCceEEEeeeeCC---------Cccc
Q 028253 58 -----EQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEAD---------DWAT 123 (211)
Q Consensus 58 -----~~~~~l~fdp~~dFH~Y~i~W~~~~I~fyVDg~~vr~~~~~~~~~~P~~~Pm~l~lnlW~gg---------~Wat 123 (211)
...+.+++|++++||+|+|+|+|++|+|||||++++++.+ .+. .+||+|.+++-.+. .|+
T Consensus 174 ~~~~~~~~~~~~~d~~~~fH~y~v~W~~~~i~~yvDg~~~~~~~~----~~w-~~~~~~~~~~~~~~p~~~~~~~~~~~- 247 (269)
T cd02177 174 YPPTEQLNYHRPFDPSKDFHTYGCNVNQDEIIWYVDGVEVGRKPN----KYW-HRPMNVTLSLGLRKPFVKFFDNKNNA- 247 (269)
T ss_pred cccccceEEccCCCCccCcEEEEEEEeCCEEEEEECCEEEEEEcC----Ccc-ccccEEeeccccCcchhhhhccccCC-
Confidence 1235577899999999999999999999999999999975 333 78999998875432 366
Q ss_pred CCCCcccCCCCCCEEEEEeEEEEe
Q 028253 124 RGGLEKIDWSKAPFYAYYRDFDIE 147 (211)
Q Consensus 124 ~GG~~~~d~~~~Pf~a~~~~v~v~ 147 (211)
|+. .+.+.+|..|+||+|||.
T Consensus 248 -~~~--~~~~~fP~~m~VDyVRv~ 268 (269)
T cd02177 248 -KAR--EKASDFPTSMYVDYVRVW 268 (269)
T ss_pred -CCC--CccCcCCceEEEEEEEEe
Confidence 443 556789999999999985
No 11
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16. KRE6 is a Saccharomyces cerevisiae glucanase that participates in the synthesis of beta-1,6-glucan, a major structural component of the cell wall. It is a golgi membrane protein required for normal beta-1,6-glucan levels in the cell wall. KRE6 is closely realted to laminarinase, a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=99.93 E-value=1.7e-25 Score=197.67 Aligned_cols=142 Identities=18% Similarity=0.180 Sum_probs=97.4
Q ss_pred CEEEecCC-CCCceEEEEEEecCC-------------CC-----CCCcEEE-EEcCCCCC-CCcE---EE----------
Q 028253 1 MKIKLVPG-DSAGTVTAFYMNSNT-------------EN-----VRDELDF-EFLGNRTG-QPYT---VQ---------- 46 (211)
Q Consensus 1 ~riKl~~~-~s~G~v~Afwl~s~~-------------~~-----~~dEIDi-E~lG~~~g-~p~~---~~---------- 46 (211)
||||||.+ .+.|+||||||+++. |. ..+|||| |.+|.+.. .... +|
T Consensus 84 aR~klp~~~~~~G~WPAfWmlg~~~~~~~~~~~~~~WP~~~~~~~~GEIDImE~~~~~~~~~~~~~~s~~~~~~~~~~~~ 163 (295)
T cd02180 84 ASASLPGKPDVSGLWPAVWTMGNLGRPGYLATTEGVWPYSYDGRGAPEIDIIEAQVGNGLGIGQVSQSLQVAPFDAWYRP 163 (295)
T ss_pred EEEECCCCCCCCCcceeeecccccccccccccccCCCCcccccCCCCcEEEEeeecCCCCcCceEeeEEeeccccccccC
Confidence 68999974 358999999999852 21 0389998 99985431 1111 11
Q ss_pred ------EEEEeC------CC-CCcce-eE----ecCC----CCCCCcEEEEEEEcC-----CeEEEEECCeEEEEEeCCC
Q 028253 47 ------TNIYAN------GK-GDREQ-RV----NLWF----DPAADYHLYTILWNH-----HHIVFYVDDVPIRVYKNSG 99 (211)
Q Consensus 47 ------tn~~~~------g~-~~~~~-~~----~l~f----dp~~dFH~Y~i~W~~-----~~I~fyVDg~~vr~~~~~~ 99 (211)
..+|.. +. ++..+ .. .+.- ...++||+|+|+|+| ++|+|||||+++++++...
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~wyvDg~~~~~~~~~~ 243 (295)
T cd02180 164 DYSSDFVTIYNDTTTIMNTYTGGVFQQAISCVTRLNDSWYPGNGNEFQTYGFEYRPDDEDDGYITWFVDDEPTWTIYAKA 243 (295)
T ss_pred CCCccceEEecCcccccccccCCccccccccccccCCccccccCCCcEEEEEEEecCCCCCCEEEEEECCEEEEEEehHH
Confidence 111211 00 01000 00 1111 136789999999999 8999999999999998642
Q ss_pred C--------CCCCCCCCceEEEeeeeCCCcccCCCCcccCCCCCCEEEEEeEEEEe
Q 028253 100 R--------APFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDIE 147 (211)
Q Consensus 100 ~--------~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~~v~v~ 147 (211)
. .++| ++||+|+||+++||+|+ |. +.+-+..|..|+||+|||.
T Consensus 244 ~~~~~~~~~~~~~-~~P~ylILNlAvGg~w~---g~-~~~~~~~P~~m~VDyVRVY 294 (295)
T cd02180 244 LGPNGNIGWRIIP-EEPMYIILNLGISSNFQ---DI-DWDELQFPATMRIDYVRVY 294 (295)
T ss_pred cCCcccccccccC-CCCeEEEEEEEeccccC---CC-CcccCCCCCEEEEEEEEEE
Confidence 1 2356 89999999999999998 43 3455678999999999996
No 12
>cd08024 GH16_CCF Coelomic cytolytic factor, member of glycosyl hydrolase family 16. Subgroup of glucanases of unknown function that are related to beta-GRP (beta-1,3-glucan recognition protein), but contain active site residues. Beta-GRPs are one group of pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. Beta-GRPs are present in insects and lack all catalytic residues. This subgroup contains related proteins that still contain the active site and are widely distributed in eukaryotes. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.91 E-value=6.5e-24 Score=190.31 Aligned_cols=119 Identities=25% Similarity=0.311 Sum_probs=89.4
Q ss_pred CEEEecCCCCCceEEEEEEecCC------CCCCCcEEE-EEcCCCCCCC-------cEEEEEEEeCCC-CC---cce--e
Q 028253 1 MKIKLVPGDSAGTVTAFYMNSNT------ENVRDELDF-EFLGNRTGQP-------YTVQTNIYANGK-GD---REQ--R 60 (211)
Q Consensus 1 ~riKl~~~~s~G~v~Afwl~s~~------~~~~dEIDi-E~lG~~~g~p-------~~~~tn~~~~g~-~~---~~~--~ 60 (211)
+|||||.| .|+||||||++.+ |. .+|||| |.+|+....+ ..++..+|.... .. +.. .
T Consensus 119 ~RaKlP~G--~g~WPAfWmlp~~~~yg~WP~-sGEIDImE~~Gn~~~~~~~~~~g~~~v~~tlH~g~~~~~~~~~~~~~~ 195 (330)
T cd08024 119 VRAKLPTG--DWLWPAIWMLPRDNVYGGWPR-SGEIDIMESRGNRPLYDGGEAIGINSVGSTLHWGPDPGQNRYTKTTGK 195 (330)
T ss_pred EEEECCCC--CccceeeeecCCccccCCCCC-CCcEEEEEEeCCCcccccccccCcceEEEEEEeCCCCCCCccccccce
Confidence 69999998 8999999999974 56 799998 9999864321 235555653221 11 111 1
Q ss_pred E-ecCCCCCCCcEEEEEEEcCCeEEEEECCeEEEEEeCCC---------------------CCCCCCCCCceEEEeeeeC
Q 028253 61 V-NLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSG---------------------RAPFPMNQPMGVYSTLWEA 118 (211)
Q Consensus 61 ~-~l~fdp~~dFH~Y~i~W~~~~I~fyVDg~~vr~~~~~~---------------------~~~~P~~~Pm~l~lnlW~g 118 (211)
. ....+.+++||+|+|+|+|++|+|||||+++++++... ....||++|+||+|||++|
T Consensus 196 ~~~~~~~~~~~FHtY~veWtpd~I~fyVDG~~~~~v~~~~~~~w~~g~~~~~~~~~~w~~~~~~aPFd~~fyliLNvAVG 275 (330)
T cd08024 196 RSDSGGDFADDFHTYGLDWTPDHIRFYVDDRLILTLDVPGQGFWEFGGFSGTPIDNPWAGGGKMAPFDQEFYLILNVAVG 275 (330)
T ss_pred eccCCCCcccCCEEEEEEEeCCEEEEEECCEEEEEEecCCCCceeeccccccccCCcccccCcCCCCCCCEEEEEEEEec
Confidence 1 12245678999999999999999999999999998520 1346899999999999999
Q ss_pred CCcc
Q 028253 119 DDWA 122 (211)
Q Consensus 119 g~Wa 122 (211)
|.|.
T Consensus 276 G~~~ 279 (330)
T cd08024 276 GTNG 279 (330)
T ss_pred CCCC
Confidence 9886
No 13
>cd02179 GH16_beta_GRP beta-1,3-glucan recognition protein, member of glycosyl hydrolase family 16. Beta-GRP (beta-1,3-glucan recognition protein) is one of several pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. They are present in insects and lack all catalytic residues. This subgroup also contains related proteins of unknown function that still contain the active site. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.91 E-value=1.3e-23 Score=187.75 Aligned_cols=116 Identities=13% Similarity=0.122 Sum_probs=83.5
Q ss_pred CEEEecCCCCCceEEEEEEecCC-------CCCCCcEEE-EEcCCCCCC---C----cEEEEEEEeCCC-CCcce--eEe
Q 028253 1 MKIKLVPGDSAGTVTAFYMNSNT-------ENVRDELDF-EFLGNRTGQ---P----YTVQTNIYANGK-GDREQ--RVN 62 (211)
Q Consensus 1 ~riKl~~~~s~G~v~Afwl~s~~-------~~~~dEIDi-E~lG~~~g~---p----~~~~tn~~~~g~-~~~~~--~~~ 62 (211)
+|||||.| .|+||||||++.+ |. ++|||| |.+|+.... . .+++...+.... ..+.. ...
T Consensus 116 vRAKlP~G--dglWPAiWmlP~~~~yg~w~P~-sGEIDImE~~Gn~~~~~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~ 192 (321)
T cd02179 116 IRAKLPKG--DWIYPELLLEPVNNYYGSSDYA-SGQIRIAFARGNAVLRADGTDIGGKKLYGGPVLTDAEPHRSANLKTK 192 (321)
T ss_pred EEEEccCC--CCcccceeecccccccCCCCCC-CCeEEEEEeCCCCccccCCceeccceEEcccccCCCccccccccccc
Confidence 59999998 9999999999874 45 799998 999986310 0 122222221111 11111 011
Q ss_pred -cCCCCCCCcEEEEEEEcCCeEEEEECCeEEEEEeCCCC------------------CCCCCCCCceEEEeeeeCC
Q 028253 63 -LWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGR------------------APFPMNQPMGVYSTLWEAD 119 (211)
Q Consensus 63 -l~fdp~~dFH~Y~i~W~~~~I~fyVDg~~vr~~~~~~~------------------~~~P~~~Pm~l~lnlW~gg 119 (211)
...+.+++||+|+|+|+|++|+|||||+++++++.... ...||++|+||+|||++||
T Consensus 193 ~~~~~~~ddFHtY~leWtpd~I~f~VDg~~~~~~~~~~~~~~~~~~~~~~~~w~~g~~~aPFD~~FyliLNlAVGG 268 (321)
T cd02179 193 INNELWSDDFHVYTLEWKPDGITLMVDGEEYGEIEPGEGGYSEAANNPAASRWLGGTVMAPFDKEFYLSLGVGVGG 268 (321)
T ss_pred CCCCccccCcEEEEEEEeCCEEEEEECCEEEEEEecCcCccccccccccCccccccCccCCCCCCeEEEEEEEecC
Confidence 12356799999999999999999999999999986321 2458899999999999998
No 14
>COG2273 SKN1 Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
Probab=99.87 E-value=9.5e-22 Score=177.57 Aligned_cols=136 Identities=26% Similarity=0.410 Sum_probs=108.3
Q ss_pred CEEEecCCCCCceEEEEEEecC---CCCCCCcEEEEEcCCCCCCCcEEEEEEEeCCCCCcceeEecCC-CCCCCcEEEEE
Q 028253 1 MKIKLVPGDSAGTVTAFYMNSN---TENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWF-DPAADYHLYTI 76 (211)
Q Consensus 1 ~riKl~~~~s~G~v~Afwl~s~---~~~~~dEIDiE~lG~~~g~p~~~~tn~~~~g~~~~~~~~~l~f-dp~~dFH~Y~i 76 (211)
+||||+.+ +|+||||||+++ +..+++|||||++|+++. +..+|+|.+.++.++.+....+.+ +..++||+|++
T Consensus 123 vrak~~~~--~G~wpafw~~~g~~~dg~wp~e~d~e~lgg~~~-~~~i~t~~~~~~~~~~~~~~~~~~~~~~~~fhty~~ 199 (355)
T COG2273 123 VRAKLPLV--SGLWPAFWTLTGLSRDGGWPDEIDIEDLGGQST-NTVIQTNHYQGGGGGTSKLVDHPNPDAIDGFHTYAF 199 (355)
T ss_pred EEeccCCC--cccceeeEeccCcccCCCCCcceeeeeecCCCc-ccceEeeeeccCCCCceecccccCCCccccccccee
Confidence 57888855 999999999997 456689999999997764 456999999999887777777777 88999999999
Q ss_pred EEcCCeEEEEECCeEEEEEeCCCCCCCCCCCCceEEEeeeeCCCcccCCCCcccCCCCCCEEEEEeEE
Q 028253 77 LWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDF 144 (211)
Q Consensus 77 ~W~~~~I~fyVDg~~vr~~~~~~~~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~~v 144 (211)
+|.++.|+|||||++++++... ...| ..||++++|+|.++.+.+.-|. ......|..+.+..+
T Consensus 200 ~W~~~~i~Wyvdg~~~~~~~~p--~~~~-~~p~y~~~nl~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 262 (355)
T COG2273 200 LWGEDSISWYVDGAPVATATKP--DYIP-QIPFYVLVNLWMGGYAGGPPGE--ALSAGSPLNIDYYRV 262 (355)
T ss_pred eccCCeEEEEEcceEeeEEecc--ccCc-CCcceeEEeecccCccCCCccc--cccCCcceEeeeeee
Confidence 9999999999999999999764 3447 8999999999999866533232 333344555544443
No 15
>PF06955 XET_C: Xyloglucan endo-transglycosylase (XET) C-terminus; InterPro: IPR010713 This entry represents the C terminus (approximately 60 residues) of plant xyloglucan endo-transglycosylase (XET). Xyloglucan is the predominant hemicellulose in the cell walls of most dicotyledons. With cellulose, it forms a network that strengthens the cell wall. XET catalyses the splitting of xyloglucan chains and the linking of the newly generated reducing end to the non-reducing end of another xyloglucan chain, thereby loosening the cell wall []. ; GO: 0016762 xyloglucan:xyloglucosyl transferase activity, 0006073 cellular glucan metabolic process, 0005618 cell wall, 0048046 apoplast; PDB: 1UMZ_A 1UN1_B 2VH9_B 2UWC_A 2UWB_B 2UWA_C.
Probab=99.86 E-value=1.5e-22 Score=135.02 Aligned_cols=50 Identities=54% Similarity=1.158 Sum_probs=41.6
Q ss_pred CCCCCCCcccccCcccCCHHHHHHHHHHhhcCeEeecCcCCCCCCC-CCCCC
Q 028253 157 CASNPGNWWEANNYQALTAMEARRYRWVRLNHMIYDYCTDKSRYPV-PPPEC 207 (211)
Q Consensus 157 C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~YdYC~D~~r~~~-~p~eC 207 (211)
|++++..||+++.++ |+++|+++|+|||+||||||||+|++|||. +|+||
T Consensus 1 C~~~~~~w~~~~~~~-L~~~q~~~m~wvr~~ymiYdYC~D~~Rfp~~~P~EC 51 (51)
T PF06955_consen 1 CSSSSKSWWNQPYAQ-LSAKQRRQMRWVRRNYMIYDYCTDTKRFPNPLPPEC 51 (51)
T ss_dssp -TTTTTSGGCSCCCS---HHHHHHHHHHHHHCEEEEGGG-TTT-SGCGSTTH
T ss_pred CcCCCcccccCcccC-CCHHHHHHHHHHHHcCeEecccCCCCcCCCCCCCCC
Confidence 655677899998888 999999999999999999999999999998 59999
No 16
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1. Beta1,6-Glucan is a key component of the yeast cell wall, interconnecting cell wall proteins, beta1,3-glucan, and chitin. It has been postulated that the synthesis of beta1,6-glucan begins in the endoplasmic reticulum with the formation of protein-bound primer structures and that these primer structures are extended in the Golgi complex by two putative glucosyltransferases that are functionally redundant, Kre6 and Skn1. This is followed by maturation steps at the cell surface and by coupling to other cell wall macromolecules [].
Probab=99.04 E-value=9.3e-10 Score=103.09 Aligned_cols=86 Identities=16% Similarity=0.299 Sum_probs=69.1
Q ss_pred CCCcEEEEEEEcCC-----eEEEEECCeEEEEEeCCCC--------CCCCCCCCceEEEeeeeCCCcccCCCCcccCCCC
Q 028253 68 AADYHLYTILWNHH-----HIVFYVDDVPIRVYKNSGR--------APFPMNQPMGVYSTLWEADDWATRGGLEKIDWSK 134 (211)
Q Consensus 68 ~~dFH~Y~i~W~~~-----~I~fyVDg~~vr~~~~~~~--------~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~ 134 (211)
..+||+|++||.|. .|+|+|||+++.++....- ..+| ..||+|++||....+|+ .+||..
T Consensus 365 ~~~f~~YgfEy~Pg~~~~GYItW~vdg~~twti~a~Al~~~~~I~~R~Ip-~EPMyIIlNlgmS~sf~------~vd~~~ 437 (504)
T PF03935_consen 365 GGCFQTYGFEYKPGDGDDGYITWFVDGEPTWTINAEALGPNPNIGQRPIP-EEPMYIILNLGMSSSFG------YVDWNH 437 (504)
T ss_pred CCceEEEEEEEEeCCCCCeEEEEEECCEEEEEEEhhhcCCCCCcCccccC-cCCceeeeccccccccC------cccccc
Confidence 37899999999864 8999999999999975321 3588 89999999999999997 377764
Q ss_pred --CCEEEEEeEEEEeecCCCCCCcCCCC
Q 028253 135 --APFYAYYRDFDIEGCPVPGPANCASN 160 (211)
Q Consensus 135 --~Pf~a~~~~v~v~~c~~~~~~~C~~~ 160 (211)
+|.+|.||+|||+.=.-...-.|.+.
T Consensus 438 L~FP~~M~IDYVRVYQ~~~~~~vgCDP~ 465 (504)
T PF03935_consen 438 LCFPATMRIDYVRVYQPEDAINVGCDPP 465 (504)
T ss_pred ccccceEEEeEEEEeccCCCCeeeeCCC
Confidence 79999999999985433334568643
No 17
>cd02181 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Group of fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Lam16A belongs to the 'nonspecific' 1,3(4)-beta-glucanase subfamily, although beta-1,6 branching and beta-1,4 bonds specifically define where Lam16A hydrolyzes its substrates, like curdlan (beta-1,3-glucan), lichenin (beta-1,3-1,4-mixed linkage glucan), and laminarin (beta-1,6-branched-1,3-glucan).
Probab=98.95 E-value=2.1e-09 Score=94.95 Aligned_cols=113 Identities=25% Similarity=0.373 Sum_probs=71.7
Q ss_pred CEE-EecCCCCCceEEEEEEecCC-CCCCCcEEE-EEcCCCCCCCcEEEEEEEeCCC----------C------------
Q 028253 1 MKI-KLVPGDSAGTVTAFYMNSNT-ENVRDELDF-EFLGNRTGQPYTVQTNIYANGK----------G------------ 55 (211)
Q Consensus 1 ~ri-Kl~~~~s~G~v~Afwl~s~~-~~~~dEIDi-E~lG~~~g~p~~~~tn~~~~g~----------~------------ 55 (211)
+|| |||.+ .|+||||||++.+ |. .+|||| |.++.... .+..+|..+. +
T Consensus 85 ~~~~~~P~g--~G~WPAfW~~g~~WP~-~GEIDImE~vn~~~~----n~~tlHt~~gC~i~~~~~~tg~~~~~nC~~~~~ 157 (293)
T cd02181 85 ADIAHMPGG--CGTWPAFWTVGPNWPN-GGEIDIIEGVNLQTS----NQMTLHTGPGCTISNSGSFTGTVTTTNCDVNQN 157 (293)
T ss_pred EEhhhCCCC--CCccchhhhcCCCCCC-CCcEEEEeccCCCCc----eEEEEecCCCEEcCCCCCccCcccCCCcCCCCC
Confidence 355 89987 9999999999886 77 899998 99986432 3333443210 0
Q ss_pred -CcceeEe--------cCCCCCCCcEEEEEEEcCCeEEEEE---CCeEEEEEeCCC-C-------CCCCCC---------
Q 028253 56 -DREQRVN--------LWFDPAADYHLYTILWNHHHIVFYV---DDVPIRVYKNSG-R-------APFPMN--------- 106 (211)
Q Consensus 56 -~~~~~~~--------l~fdp~~dFH~Y~i~W~~~~I~fyV---Dg~~vr~~~~~~-~-------~~~P~~--------- 106 (211)
+.+-.+. ..|+ +++=-+|+++|+.+.|+.+. +.+|--...... . ..|| .
T Consensus 158 ~n~GC~v~~~~~~syG~~FN-~~GGGvyA~ew~~~~I~vWff~R~~iP~di~~~~pdPs~WG~P~A~f~-~~~Cdi~~~F 235 (293)
T cd02181 158 GNAGCGVTSTSTNSYGAGFN-AAGGGVYAMEWTSDGIKVWFFPRGSIPADITSGSPDPSTWGTPAASFP-GSSCDIDSFF 235 (293)
T ss_pred CCCCceeecCCCCccccccc-cCCCcEEEEEEccCcEEEEEecCCCCCcccccCCCCCcccCcccccCC-CCCCChhHhc
Confidence 0010111 1122 35568999999999987554 233322111111 1 3465 3
Q ss_pred CCceEEEeeeeCCCcc
Q 028253 107 QPMGVYSTLWEADDWA 122 (211)
Q Consensus 107 ~Pm~l~lnlW~gg~Wa 122 (211)
++++|++|+=.=|+||
T Consensus 236 ~~~~iVfn~tfCGdwA 251 (293)
T cd02181 236 KDQRIVFDTTFCGDWA 251 (293)
T ss_pred ccCEEEEEeecccccc
Confidence 8999999999999999
No 18
>PF09264 Sial-lect-inser: Vibrio cholerae sialidase, lectin insertion; InterPro: IPR015344 This domain is predominantly found in Vibrio cholerae sialidase, and adopt a beta sandwich structure consisting of 12-14 strands arranged in two beta-sheets. It binds to lectins with high affinity helping to target the protein to sialic acid-rich environments, thereby enhancing the catalytic efficiency of the enzyme []. ; PDB: 1W0P_A 1W0O_A 1KIT_A 2W68_B.
Probab=91.86 E-value=0.35 Score=40.45 Aligned_cols=28 Identities=29% Similarity=0.619 Sum_probs=25.0
Q ss_pred CCcEEEEEEEcC--CeEEEEECCeEEEEEe
Q 028253 69 ADYHLYTILWNH--HHIVFYVDDVPIRVYK 96 (211)
Q Consensus 69 ~dFH~Y~i~W~~--~~I~fyVDg~~vr~~~ 96 (211)
.+||.|.|.-.| ..-.|||||++|++..
T Consensus 92 ~gyH~Y~i~~~p~~~tASfy~DG~lI~tw~ 121 (198)
T PF09264_consen 92 HGYHKYEIVFSPLTNTASFYFDGTLIATWS 121 (198)
T ss_dssp CSEEEEEEEEETTTTEEEEEETTEEEEEE-
T ss_pred cceeEEEEEecCCCCceEEEECCEEEeecc
Confidence 579999999987 8999999999999863
No 19
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A ....
Probab=91.33 E-value=0.71 Score=34.75 Aligned_cols=67 Identities=13% Similarity=0.265 Sum_probs=39.7
Q ss_pred CCCCcEEEEEEEcCCeEEEEECCeEEEEEeCCCCCCCCCCCCceEEEeeeeCCCcccCCCCcccCCCCCCEEEEEeEEEE
Q 028253 67 PAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDI 146 (211)
Q Consensus 67 p~~dFH~Y~i~W~~~~I~fyVDg~~vr~~~~~~~~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~~v~v 146 (211)
+...||..++-|....+.+||||+++.+.........+ ....+ -.|+.. ....+|...++.|+|
T Consensus 83 ~~~~W~~l~~~~~~~~~~lyvnG~~~~~~~~~~~~~~~--~~~~~----~iG~~~----------~~~~~~~g~i~~~~i 146 (157)
T PF13385_consen 83 PDNKWHHLALTYDGSTVTLYVNGELVGSSTIPSNISLN--SNGPL----FIGGSG----------GGSSPFNGYIDDLRI 146 (157)
T ss_dssp -TT-EEEEEEEEETTEEEEEETTEEETTCTEESSSSTT--SCCEE----EESS-S----------TT--B-EEEEEEEEE
T ss_pred CCCCEEEEEEEEECCeEEEEECCEEEEeEeccCCcCCC--CcceE----EEeecC----------CCCCceEEEEEEEEE
Confidence 35889999999999999999999998664321111101 11111 122211 235689999999999
Q ss_pred eec
Q 028253 147 EGC 149 (211)
Q Consensus 147 ~~c 149 (211)
...
T Consensus 147 ~~~ 149 (157)
T PF13385_consen 147 YNR 149 (157)
T ss_dssp ESS
T ss_pred ECc
Confidence 743
No 20
>PF10287 DUF2401: Putative TOS1-like glycosyl hydrolase (DUF2401); InterPro: IPR018805 This entry represents a family of proteins conserved primarily in fungi. One member is annotated putatively as OPEL, a house-keeping protein, but this could not be confirmed. It contains 5 highly conserved cysteines two of which form a characteristic CGC sequence motif.
Probab=90.05 E-value=1.3 Score=38.36 Aligned_cols=74 Identities=9% Similarity=0.187 Sum_probs=45.8
Q ss_pred EEEecCCC-----CCceEEEEEEecCC---------------CCCCCcEEE-EEcCCCCCCCcEEEEEEEe-CCCC----
Q 028253 2 KIKLVPGD-----SAGTVTAFYMNSNT---------------ENVRDELDF-EFLGNRTGQPYTVQTNIYA-NGKG---- 55 (211)
Q Consensus 2 riKl~~~~-----s~G~v~Afwl~s~~---------------~~~~dEIDi-E~lG~~~g~p~~~~tn~~~-~g~~---- 55 (211)
+.+||... ...=.||+||++.. ..-++|.|| |+|.... . .+-+.+|. +|..
T Consensus 106 ef~MP~~~~~~~~~~~DmPAIWlLNA~IpRT~QY~~~~CSCW~sGCGEfDifEVl~~g~--~-k~~St~H~~qG~~~~~~ 182 (235)
T PF10287_consen 106 EFSMPHETDGGSGFNYDMPAIWLLNAQIPRTSQYGNAGCSCWKSGCGEFDIFEVLNSGD--D-KLKSTFHDYQGTDDING 182 (235)
T ss_pred EEECCCCcCCCCCCCCCcChhHhccccCcchhhcCCCCCCccCCCcccceeeeeccCCC--c-eeEEEEecccCccccCC
Confidence 56788732 24458999999863 113899997 9997643 2 56666665 4431
Q ss_pred --CcceeEecCCCCCCCcEEEEEEEcCC
Q 028253 56 --DREQRVNLWFDPAADYHLYTILWNHH 81 (211)
Q Consensus 56 --~~~~~~~l~fdp~~dFH~Y~i~W~~~ 81 (211)
+....+ --|+...-.++|.++.+
T Consensus 183 g~G~~~yf---~RPt~~~~k~aVifd~~ 207 (235)
T PF10287_consen 183 GGGSSDYF---KRPTSGTMKVAVIFDSS 207 (235)
T ss_pred CCCCCCcc---cCCCCCCeEEEEEEcCC
Confidence 111111 13677888888888643
No 21
>smart00560 LamGL LamG-like jellyroll fold domain.
Probab=89.98 E-value=3.2 Score=31.94 Aligned_cols=70 Identities=13% Similarity=0.198 Sum_probs=44.6
Q ss_pred CCCCCcEEEEEEEcC--CeEEEEECCeEEEEEeCCCCCCCCCCCCceEEEeeeeCCCcccCCCCcccCCCCCCEEEEEeE
Q 028253 66 DPAADYHLYTILWNH--HHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRD 143 (211)
Q Consensus 66 dp~~dFH~Y~i~W~~--~~I~fyVDg~~vr~~~~~~~~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~~ 143 (211)
++...+|...+-++. .+|+.||||+++.+.... ..+...|+.+-.... . ++ ....+|.-.++.
T Consensus 58 ~~~~~W~hva~v~d~~~g~~~lYvnG~~~~~~~~~---~~~~~~~~~iG~~~~-----~--~~-----~~~~~f~G~Ide 122 (133)
T smart00560 58 DWIGVWVHLAGVYDGGAGKLSLYVNGVEVATSETQ---PSPSSGNLPQGGRIL-----L--GG-----AGGENFSGRLDE 122 (133)
T ss_pred CCCCCEEEEEEEEECCCCeEEEEECCEEccccccC---CcccCCceEEeeecc-----C--CC-----CCCCCceEEeeE
Confidence 345789999999988 799999999998754321 112123333221111 1 11 123489999999
Q ss_pred EEEeecC
Q 028253 144 FDIEGCP 150 (211)
Q Consensus 144 v~v~~c~ 150 (211)
|+|..+.
T Consensus 123 vriy~~a 129 (133)
T smart00560 123 VRVYNRA 129 (133)
T ss_pred EEEeccc
Confidence 9998764
No 22
>smart00210 TSPN Thrombospondin N-terminal -like domains. Heparin-binding and cell adhesion domain of thrombospondin
Probab=87.83 E-value=14 Score=30.22 Aligned_cols=29 Identities=17% Similarity=0.213 Sum_probs=26.2
Q ss_pred CCCcEEEEEEEcCCeEEEEECCeEEEEEe
Q 028253 68 AADYHLYTILWNHHHIVFYVDDVPIRVYK 96 (211)
Q Consensus 68 ~~dFH~Y~i~W~~~~I~fyVDg~~vr~~~ 96 (211)
...||.-+|.+..+.+++|||++++.+..
T Consensus 116 dg~WH~lal~V~~~~v~LyvDC~~~~~~~ 144 (184)
T smart00210 116 DGQWHKLALSVSGSSATLYVDCNEIDSRP 144 (184)
T ss_pred cCCceEEEEEEeCCEEEEEECCcccccee
Confidence 46799999999999999999999988764
No 23
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family. This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.
Probab=86.66 E-value=17 Score=30.20 Aligned_cols=73 Identities=16% Similarity=0.217 Sum_probs=41.9
Q ss_pred CCCCcEEEEEEEc--CCeEEEEECCeEEEEEeCCCCCCCCCCCCceEEEeeeeCCCcccCCCCcccCCCCCCEEEEEeEE
Q 028253 67 PAADYHLYTILWN--HHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDF 144 (211)
Q Consensus 67 p~~dFH~Y~i~W~--~~~I~fyVDg~~vr~~~~~~~~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~~v 144 (211)
....+|...+.|+ ..++.+||||+++..-.-.....++ ..-.|.|.- .-+.+ ||. .+ ....|.-.+++|
T Consensus 88 ~~g~W~hvc~tw~~~~g~~~lyvnG~~~~~~~~~~g~~i~--~~G~lvlGq-~qd~~---gg~--f~-~~~~f~G~i~~v 158 (206)
T smart00159 88 SDGKWHHICTTWESSSGIAELWVDGKPGVRKGLAKGYTVK--PGGSIILGQ-EQDSY---GGG--FD-ATQSFVGEIGDL 158 (206)
T ss_pred cCCceEEEEEEEECCCCcEEEEECCEEcccccccCCcEEC--CCCEEEEEe-cccCC---CCC--CC-CCcceeEEEeee
Confidence 3578999999997 5579999999987211100001222 222333332 11223 342 33 234688999999
Q ss_pred EEee
Q 028253 145 DIEG 148 (211)
Q Consensus 145 ~v~~ 148 (211)
+|..
T Consensus 159 ~iw~ 162 (206)
T smart00159 159 NMWD 162 (206)
T ss_pred EEec
Confidence 9854
No 24
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=83.21 E-value=3.5 Score=32.88 Aligned_cols=32 Identities=16% Similarity=0.474 Sum_probs=29.0
Q ss_pred CCCCcEEEEEEEcCCeEEEEECCeEEEEEeCC
Q 028253 67 PAADYHLYTILWNHHHIVFYVDDVPIRVYKNS 98 (211)
Q Consensus 67 p~~dFH~Y~i~W~~~~I~fyVDg~~vr~~~~~ 98 (211)
+..++|++.|.-..++|+.+|||++|.++...
T Consensus 125 ~~~~W~~~~I~~~g~~i~v~vnG~~v~~~~d~ 156 (185)
T PF06439_consen 125 PPGEWNTVRIVVKGNRITVWVNGKPVADFTDP 156 (185)
T ss_dssp -TTSEEEEEEEEETTEEEEEETTEEEEEEETT
T ss_pred CCCceEEEEEEEECCEEEEEECCEEEEEEEcC
Confidence 56899999999999999999999999999864
No 25
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=81.87 E-value=20 Score=27.07 Aligned_cols=72 Identities=13% Similarity=0.104 Sum_probs=40.4
Q ss_pred CCCcEEEEEEEcCCeEEEEECCeEEEEEeCCCCCCCCCCCCceEEEeeeeCCCcccCCCCcccCCCCCCEEEEEeEEEE
Q 028253 68 AADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDI 146 (211)
Q Consensus 68 ~~dFH~Y~i~W~~~~I~fyVDg~~vr~~~~~~~~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~~v~v 146 (211)
...||.-.|.+....++.+|||..+.+....... .-+.....+..||.-....+ +..-...+|+-.+++|++
T Consensus 79 dg~Wh~v~i~~~~~~~~l~VD~~~~~~~~~~~~~-----~~~~~~~~~~iGg~~~~~~~--~~~~~~~~F~Gci~~v~i 150 (151)
T cd00110 79 DGQWHSVSVERNGRSVTLSVDGERVVESGSPGGS-----ALLNLDGPLYLGGLPEDLKS--PGLPVSPGFVGCIRDLKV 150 (151)
T ss_pred CCCEEEEEEEECCCEEEEEECCccEEeeeCCCCc-----eeecCCCCeEEcCCCCchhc--ccccccCCCceEeeEeEe
Confidence 3569999999999999999999854443321100 01122223334442211011 011244578888888876
No 26
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.
Probab=80.60 E-value=31 Score=28.46 Aligned_cols=73 Identities=11% Similarity=0.129 Sum_probs=42.5
Q ss_pred CCCCcEEEEEEEc--CCeEEEEECCeEEEEEeCCCCCCCCCCCCceEEEeeeeCCCcccCCCCcccCCCCCCEEEEEeEE
Q 028253 67 PAADYHLYTILWN--HHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDF 144 (211)
Q Consensus 67 p~~dFH~Y~i~W~--~~~I~fyVDg~~vr~~~~~~~~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~~v 144 (211)
....+|...+.|+ ...+.+||||+++.+-.-.....++ ....|.|. .+--.-||. .+ ....|.-.++.|
T Consensus 88 ~~g~W~hv~~t~d~~~g~~~lyvnG~~~~~~~~~~~~~~~--~~g~l~lG----~~q~~~gg~--~~-~~~~f~G~I~~v 158 (201)
T cd00152 88 SDGAWHHICVTWESTSGIAELWVNGKLSVRKSLKKGYTVG--PGGSIILG----QEQDSYGGG--FD-ATQSFVGEISDV 158 (201)
T ss_pred CCCCEEEEEEEEECCCCcEEEEECCEEeccccccCCCEEC--CCCeEEEe----ecccCCCCC--CC-CCcceEEEEcee
Confidence 4678999999998 5579999999988543211101222 12223322 111111343 33 234789999999
Q ss_pred EEee
Q 028253 145 DIEG 148 (211)
Q Consensus 145 ~v~~ 148 (211)
+|..
T Consensus 159 ~iw~ 162 (201)
T cd00152 159 NMWD 162 (201)
T ss_pred EEEc
Confidence 9853
No 27
>PF02973 Sialidase: Sialidase, N-terminal domain; InterPro: IPR004124 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Sialidases (GH33 from CAZY) hydrolyse alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates. Sialidases may act as pathogenic factors in microbial infections []. The 1.8 A structure of trans-sialidase from leech (Macrobdella decora, Q27701 from SWISSPROT) in complex with 2-deoxy-2, 3-didehydro-NeuAc was solved. The refined model comprising residues 81-769 has a catalytic beta-propeller domain, a N-terminal lectin-like domain and an irregular beta-stranded domain inserted into the catalytic domain [].; GO: 0004308 exo-alpha-sialidase activity, 0005975 carbohydrate metabolic process; PDB: 2JKB_A 2VW2_A 2VW0_A 2VW1_A 2V73_B 2V72_A 1SLI_A 1SLL_A 2SLI_A 4SLI_A ....
Probab=71.44 E-value=59 Score=27.26 Aligned_cols=70 Identities=13% Similarity=0.188 Sum_probs=39.8
Q ss_pred CCcEEEEEEEc--CCeEEEEECCeEEEEEeCCCCCCCCCC--CCceEEEeeeeCCCcccCCCCcccCCCCCCEEEEEeEE
Q 028253 69 ADYHLYTILWN--HHHIVFYVDDVPIRVYKNSGRAPFPMN--QPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDF 144 (211)
Q Consensus 69 ~dFH~Y~i~W~--~~~I~fyVDg~~vr~~~~~~~~~~P~~--~Pm~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~~v 144 (211)
..||+=++.=+ ..+.++||||..+.++.... ..|-.+ .+=.+. .|+. .++|. . ..||.-.|+++
T Consensus 103 ~~~~tva~~ad~~~~~ykly~NG~~v~~~~~~~-~~Fis~i~~~n~~~----iG~t--~R~g~--~---~y~f~G~I~~l 170 (190)
T PF02973_consen 103 VTFNTVAFVADSKNKGYKLYVNGELVSTLSSKS-GNFISDIPGLNSVQ----IGGT--NRAGS--N---AYPFNGTIDNL 170 (190)
T ss_dssp ES-EEEEEEEETTTTEEEEEETTCEEEEEEECT-SS-GGGSTT--EEE----ESSE--EETTE--E---ES--EEEEEEE
T ss_pred ceEEEEEEEEecCCCeEEEEeCCeeEEEecccc-ccHhhcCcCCceEE----Ecce--EeCCC--c---eecccceEEEE
Confidence 45788777775 77899999998888875432 233211 122222 2321 22342 3 34999999999
Q ss_pred EEeecC
Q 028253 145 DIEGCP 150 (211)
Q Consensus 145 ~v~~c~ 150 (211)
+|+.+.
T Consensus 171 ~iYn~a 176 (190)
T PF02973_consen 171 KIYNRA 176 (190)
T ss_dssp EEESS-
T ss_pred EEEcCc
Confidence 998664
No 28
>PF09224 DUF1961: Domain of unknown function (DUF1961); InterPro: IPR015305 Members of this family are found in a set of hypothetical bacterial proteins. Their exact function has not, as yet, been determined. ; PDB: 1OQ1_C.
Probab=70.68 E-value=19 Score=30.87 Aligned_cols=59 Identities=24% Similarity=0.493 Sum_probs=38.5
Q ss_pred CCcEEEEEEEcCCeEEEEECCeEEEEEeCCCCCCCCCCCCceEEEeeeeCCCcccCCCCcccCCCC-CCEEEEEeEEEE
Q 028253 69 ADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSK-APFYAYYRDFDI 146 (211)
Q Consensus 69 ~dFH~Y~i~W~~~~I~fyVDg~~vr~~~~~~~~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~-~Pf~a~~~~v~v 146 (211)
..|+.-.|.=....|.|.|||.+|..++.......|- -.+|+ |-..+ +|.+|.|++++|
T Consensus 159 ~~~Yr~~i~K~~~~v~f~In~L~vf~w~Dd~~~~gPv-----------------l~~G~--IGfRqMapl~A~Yrnl~V 218 (218)
T PF09224_consen 159 RGPYRMEIVKDGRTVRFSINGLPVFSWTDDGSTYGPV-----------------LRGGR--IGFRQMAPLVARYRNLEV 218 (218)
T ss_dssp -S-EEEEEEEETTEEEEEETTEEEEEEE--SSSSSS--------------------SBE--EEEEEETT-EEEEEEEEE
T ss_pred CCCEEEEEEEcCCEEEEEECCEEEEEEEcCCCccCCc-----------------ccCcE--eeeeccchhhhhhccccC
Confidence 3677778888999999999999999997543222241 01453 43333 699999999986
No 29
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1. Beta1,6-Glucan is a key component of the yeast cell wall, interconnecting cell wall proteins, beta1,3-glucan, and chitin. It has been postulated that the synthesis of beta1,6-glucan begins in the endoplasmic reticulum with the formation of protein-bound primer structures and that these primer structures are extended in the Golgi complex by two putative glucosyltransferases that are functionally redundant, Kre6 and Skn1. This is followed by maturation steps at the cell surface and by coupling to other cell wall macromolecules [].
Probab=69.13 E-value=1.9 Score=41.28 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=18.2
Q ss_pred CEEEecCC-CCCceEEEEEEecC
Q 028253 1 MKIKLVPG-DSAGTVTAFYMNSN 22 (211)
Q Consensus 1 ~riKl~~~-~s~G~v~Afwl~s~ 22 (211)
++++||.. +.+|+||||||+++
T Consensus 204 ~~~~lPg~~~~~G~WP~~W~mGN 226 (504)
T PF03935_consen 204 VSASLPGSPDVSGLWPAFWTMGN 226 (504)
T ss_pred EEEECCCCCcCCCcCchhhhccc
Confidence 47889854 56899999999986
No 30
>smart00282 LamG Laminin G domain.
Probab=53.03 E-value=69 Score=23.86 Aligned_cols=28 Identities=14% Similarity=0.119 Sum_probs=23.5
Q ss_pred CCCcEEEEEEEcCCeEEEEECCeEEEEE
Q 028253 68 AADYHLYTILWNHHHIVFYVDDVPIRVY 95 (211)
Q Consensus 68 ~~dFH~Y~i~W~~~~I~fyVDg~~vr~~ 95 (211)
...||.-.|.-....+..+|||......
T Consensus 61 dg~WH~v~i~~~~~~~~l~VD~~~~~~~ 88 (135)
T smart00282 61 DGQWHRVAVERNGRRVTLSVDGENPVSG 88 (135)
T ss_pred CCCEEEEEEEEeCCEEEEEECCCccccE
Confidence 3579999999999999999999765443
No 31
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=52.20 E-value=19 Score=25.65 Aligned_cols=36 Identities=14% Similarity=0.241 Sum_probs=24.0
Q ss_pred eEEEEECCeEEEEEeCCCCCCCCCCCCceEEEeeee
Q 028253 82 HIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWE 117 (211)
Q Consensus 82 ~I~fyVDg~~vr~~~~~~~~~~P~~~Pm~l~lnlW~ 117 (211)
.+.|||||+++.+........++...|..-.|.+=+
T Consensus 44 ~~~W~vdg~~~g~~~~~~~~~~~~~~~G~h~l~vvD 79 (89)
T PF06832_consen 44 PVYWFVDGEPLGTTQPGHQLFWQPDRPGEHTLTVVD 79 (89)
T ss_pred cEEEEECCEEcccCCCCCeEEeCCCCCeeEEEEEEc
Confidence 789999999996655443333442467777777643
No 32
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....
Probab=50.77 E-value=91 Score=22.38 Aligned_cols=75 Identities=12% Similarity=0.166 Sum_probs=48.3
Q ss_pred CCCcEEEEEEEcCCeEEEEECCeEEEEEeCCCCCCCCCCCCceEEEeeeeCCCcccCCCCcccCCCCCCEEEEEeEEEEe
Q 028253 68 AADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDIE 147 (211)
Q Consensus 68 ~~dFH~Y~i~W~~~~I~fyVDg~~vr~~~~~~~~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~~v~v~ 147 (211)
...||.-.|.=....++..||+............ ..-+....+++.||.-...... ..-....|.-.+++++|.
T Consensus 53 dg~wh~v~i~~~~~~~~l~Vd~~~~~~~~~~~~~----~~~~~~~~~l~iGg~~~~~~~~--~~~~~~~f~Gci~~l~vn 126 (128)
T PF02210_consen 53 DGQWHKVSISRDGNRVTLTVDGQSVSSESLPSSS----SDSLDPDGSLYIGGLPESNQPS--GSVDTPGFVGCIRDLRVN 126 (128)
T ss_dssp SSSEEEEEEEEETTEEEEEETTSEEEEEESSSTT----HHCBESEEEEEESSTTTTCTCT--TSSTTSB-EEEEEEEEET
T ss_pred ccceeEEEEEEeeeeEEEEecCccceEEeccccc----eecccCCCCEEEecccCccccc--cccCCCCcEEEcCeEEEC
Confidence 4679999999999999999999998887653211 0023344557777754421111 110156788999998886
Q ss_pred e
Q 028253 148 G 148 (211)
Q Consensus 148 ~ 148 (211)
+
T Consensus 127 g 127 (128)
T PF02210_consen 127 G 127 (128)
T ss_dssp T
T ss_pred C
Confidence 4
No 33
>PF14099 Polysacc_lyase: Polysaccharide lyase; PDB: 3ILR_A 3IKW_A 3INA_A 3IMN_A 3IN9_A 2ZZJ_A.
Probab=44.42 E-value=1e+02 Score=25.34 Aligned_cols=71 Identities=14% Similarity=0.318 Sum_probs=44.8
Q ss_pred CCCCCcEEEEEE--EcC---CeEEEEECCeEEEEEeCCCCCCCCCCCCceEEEeeeeCCCcccCCCCcccCCCCCCEEEE
Q 028253 66 DPAADYHLYTIL--WNH---HHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAY 140 (211)
Q Consensus 66 dp~~dFH~Y~i~--W~~---~~I~fyVDg~~vr~~~~~~~~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~ 140 (211)
.+...+|.+.|. |.+ ..|..++||++|...+.. ..++..+..++.+.|.-.+ |....+. .+-. .+
T Consensus 149 ~~~G~W~~~~i~~~~s~~~~G~~~vw~nG~~v~~~~g~--~~~~~~~~~y~K~GiYr~~-~~~~~~~--~~~~-----vy 218 (224)
T PF14099_consen 149 VERGKWHDFVIHVKWSPDSDGFLEVWLNGKLVVDYKGP--TGYNDDRGPYFKFGIYRSG-WKNDPNE--SDTQ-----VY 218 (224)
T ss_dssp S-TTSEEEEEEEEEE-CCCTEEEEEEECCEECCEEEEE--ECECCSSEEEEEEEEEEHC-CHHHSC----SS------EE
T ss_pred cCCCcEEEEEEEEEECCCCCEEEEEEECCEEEEEEeCC--ceeCCCCcceeEEEEECCC-CcCCCcc--cccE-----EE
Confidence 345789998765 875 789999999999998762 3344236788888887654 2211111 1111 88
Q ss_pred EeEEEE
Q 028253 141 YRDFDI 146 (211)
Q Consensus 141 ~~~v~v 146 (211)
||+|++
T Consensus 219 ~D~v~~ 224 (224)
T PF14099_consen 219 YDNVRI 224 (224)
T ss_dssp EEEEE-
T ss_pred eccccC
Confidence 999875
No 34
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=40.12 E-value=37 Score=33.94 Aligned_cols=55 Identities=18% Similarity=0.354 Sum_probs=40.8
Q ss_pred CCCcEEEEEEEcCCeEEEEECCeEEEEEeCCCCCCCCCCCCceEEEeeeeCCCcccCCCC
Q 028253 68 AADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGL 127 (211)
Q Consensus 68 ~~dFH~Y~i~W~~~~I~fyVDg~~vr~~~~~~~~~~P~~~Pm~l~lnlW~gg~Wat~GG~ 127 (211)
.++||.|.+.-+--.++.||||+-..-..-. ..|| -+|.++-.-|=+|.=|- |+.
T Consensus 441 D~EWH~Y~ln~efp~VtlyvDG~Sfep~~i~--ddwp-lHpsk~~tqLvVGACW~--g~~ 495 (952)
T KOG1834|consen 441 DNEWHHYVLNVEFPDVTLYVDGKSFEPPLIT--DDWP-LHPSKIETQLVVGACWQ--GRQ 495 (952)
T ss_pred hhhhheeEEeecCceEEEEEcCcccCCceec--cCCc-cCcccccceeEEeeecc--Ccc
Confidence 3789999999976669999999754321111 5788 67888888888888898 554
No 35
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=35.01 E-value=65 Score=24.26 Aligned_cols=29 Identities=7% Similarity=0.133 Sum_probs=24.8
Q ss_pred CCCCcEEEEEEEcCCeEEEEECCeEEEEEe
Q 028253 67 PAADYHLYTILWNHHHIVFYVDDVPIRVYK 96 (211)
Q Consensus 67 p~~dFH~Y~i~W~~~~I~fyVDg~~vr~~~ 96 (211)
+.++-|++.+. ..+..+++|||++|-...
T Consensus 57 ~~~G~y~f~~~-~~d~~~l~idg~~vid~~ 85 (145)
T PF07691_consen 57 PETGTYTFSLT-SDDGARLWIDGKLVIDNW 85 (145)
T ss_dssp SSSEEEEEEEE-ESSEEEEEETTEEEEECS
T ss_pred ccCceEEEEEE-ecccEEEEECCEEEEcCC
Confidence 56788999999 888999999999997654
No 36
>KOG3516 consensus Neurexin IV [Signal transduction mechanisms]
Probab=33.87 E-value=6.4e+02 Score=27.27 Aligned_cols=87 Identities=15% Similarity=0.234 Sum_probs=49.0
Q ss_pred EEEecCCCCCceEEEEEEecCCCCCCCcEEEEEcCCCCCCCcEEEEEEEeCCCC-Ccc-eeEecCCCCCCC--cEEEEEE
Q 028253 2 KIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKG-DRE-QRVNLWFDPAAD--YHLYTIL 77 (211)
Q Consensus 2 riKl~~~~s~G~v~Afwl~s~~~~~~dEIDiE~lG~~~g~p~~~~tn~~~~g~~-~~~-~~~~l~fdp~~d--FH~Y~i~ 77 (211)
++|.++..+.|+ .|++++.+ .|=|-+|+.|..- .++.|.=..... .++ ..+.+. ..-+| ||.-.|+
T Consensus 205 s~~Fkt~~sdGv----llh~eg~Q-Gd~itlql~~~kl----~l~ld~G~~~~~~s~~~~sis~G-slLdD~hWHsV~i~ 274 (1306)
T KOG3516|consen 205 SLKFKTMQSDGV----LLHGEGQQ-GDYITLQLIGGKL----VLILDLGNSKLPSSRTPTSISAG-SLLDDQHWHSVRIE 274 (1306)
T ss_pred EEEEEeecccee----EEEcccCC-CCEEEEEEeCCEE----EEEEecCCccCccccCcceeecc-cccCCCcceEEEEE
Confidence 456666666654 46677666 7777789988541 233222111111 122 122222 12234 5666666
Q ss_pred EcCCeEEEEECCeEEEEEeCC
Q 028253 78 WNHHHIVFYVDDVPIRVYKNS 98 (211)
Q Consensus 78 W~~~~I~fyVDg~~vr~~~~~ 98 (211)
=.-..|.|.|||...+...+.
T Consensus 275 r~~~~vnftvD~~~~~fr~~G 295 (1306)
T KOG3516|consen 275 RQGRQVNFTVDGVVHHFRATG 295 (1306)
T ss_pred ecCcEEEEEEccceEeecccC
Confidence 688999999999999754443
No 37
>KOG4352 consensus Fas-mediated apoptosis inhibitor FAIM [Signal transduction mechanisms]
Probab=33.57 E-value=91 Score=25.49 Aligned_cols=50 Identities=24% Similarity=0.497 Sum_probs=36.1
Q ss_pred EEEEEEeCCCC------CcceeEecCCCCCCCcEEEEEEEcCCeEEEEECCeEEEEE
Q 028253 45 VQTNIYANGKG------DREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVY 95 (211)
Q Consensus 45 ~~tn~~~~g~~------~~~~~~~l~fdp~~dFH~Y~i~W~~~~I~fyVDg~~vr~~ 95 (211)
+.-.++.+|.. .+..++.+|. .+.+=|.|+|--..+.+..+++|..+++-
T Consensus 73 YEYsL~inGKs~~ky~Ed~~k~~~~W~-~t~dg~~~RivL~kdtm~~w~NG~~l~Ta 128 (187)
T KOG4352|consen 73 YEYSLYINGKSHDKYTEDMTKQYRLWL-YTDDGQEYRIVLKKDTMSLWVNGDELRTA 128 (187)
T ss_pred EEEEEEEcCcchHHHHHHhhhheeEEE-EecCCceEEEEEeccceeeEEcCcccccc
Confidence 44456667754 2445677763 23444999999999999999999998873
No 38
>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.62 E-value=1e+02 Score=29.79 Aligned_cols=18 Identities=17% Similarity=0.438 Sum_probs=14.4
Q ss_pred CCcEEEEEEEcCCeEEEE
Q 028253 69 ADYHLYTILWNHHHIVFY 86 (211)
Q Consensus 69 ~dFH~Y~i~W~~~~I~fy 86 (211)
.-=|+|++.|.+..+.|-
T Consensus 191 ~~~~tYsV~W~~t~v~f~ 208 (593)
T KOG1277|consen 191 KLTFTYSVKWKETEVEFE 208 (593)
T ss_pred CCceEEEEEeeeccCcHH
Confidence 335899999999988763
No 39
>PF00354 Pentaxin: Pentaxin family; InterPro: IPR001759 Pentaxins (or pentraxins) [, ] are a family of proteins which show, under electron microscopy, a discoid arrangement of five noncovalently bound subunits. Proteins of the pentaxin family are involved in acute immunological responses []. Three of the principal members of the pentaxin family are serum proteins: namely, C-reactive protein (CRP) [], serum amyloid P component protein (SAP) [], and female protein (FP) []. CRP is expressed during acute phase response to tissue injury or inflammation in mammals. The protein resembles antibody and performs several functions associated with host defence: it promotes agglutination, bacterial capsular swelling and phagocytosis, and activates the classical complement pathway through its calcium-dependent binding to phosphocholine. CRPs have also been sequenced in an invertebrate, Limulus polyphemus (Atlantic horseshoe crab), where they are a normal constituent of the hemolymph. SAP is a vertebrate protein that is a precursor of amyloid component P. It is found in all types of amyloid deposits, in glomerular basement menbrane and in elastic fibres in blood vessels. SAP binds to various lipoprotein ligands in a calcium-dependent manner, and it has been suggested that, in mammals, this may have important implications in atherosclerosis and amyloidosis. FP is a SAP homologue found in Mesocricetus auratus (Golden hamster). The concentration of this plasma protein is altered by sex steroids and stimuli that elicit an acute phase response. Pentaxin proteins expressed in the nervous system are neural pentaxin I (NPI) and II (NPII) []. NPI and NPII are homologous and can exist within one species. It is suggested that both proteins mediate the uptake of synaptic macromolecules and play a role in synaptic plasticity. Apexin, a sperm acrosomal protein, is a homologue of NPII found in Cavia porcellus (Guinea pig) []. PTX3 (or TSG-14) protein is a cytokine-induced protein that is homologous to CRPs and SAPs, but its function is not yet known.; PDB: 2A3W_F 3KQR_C 3D5O_D 2A3X_G 1SAC_D 2W08_B 1GYK_B 1LGN_A 2A3Y_A 1B09_D ....
Probab=27.22 E-value=3.6e+02 Score=22.24 Aligned_cols=72 Identities=19% Similarity=0.334 Sum_probs=37.8
Q ss_pred CCCCcEEEEEEEcC--CeEEEEECCeEEEEEeCCCCCCCCCCCCceEEEeeeeCCCcccCCCCcccCCCCCCEEEEEeEE
Q 028253 67 PAADYHLYTILWNH--HHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDF 144 (211)
Q Consensus 67 p~~dFH~Y~i~W~~--~~I~fyVDg~~vr~~~~~~~~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~~v 144 (211)
....+|.+-+-|+. ..+.+||||+....-........| ... .++| |-+=.+-||. .| ..-.|.-.+.+|
T Consensus 82 ~~~~Whh~C~tW~s~~G~~~ly~dG~~~~~~~~~~g~~i~-~gG-~~vl----GQeQd~~gG~--fd-~~q~F~G~i~~~ 152 (195)
T PF00354_consen 82 RDGQWHHICVTWDSSTGRWQLYVDGVRLSSTGLATGHSIP-GGG-TLVL----GQEQDSYGGG--FD-ESQAFVGEISDF 152 (195)
T ss_dssp -TSS-EEEEEEEETTTTEEEEEETTEEEEEEESSTT--B--SSE-EEEE----SS-BSBTTBT--CS-GGGB--EEEEEE
T ss_pred CCCCcEEEEEEEecCCcEEEEEECCEecccccccCCceEC-CCC-EEEE----CccccccCCC--cC-CccEeeEEEece
Confidence 35789999999965 789999999955443222112233 111 2222 2111122453 33 345789999998
Q ss_pred EEe
Q 028253 145 DIE 147 (211)
Q Consensus 145 ~v~ 147 (211)
++-
T Consensus 153 ~iW 155 (195)
T PF00354_consen 153 NIW 155 (195)
T ss_dssp EEE
T ss_pred EEE
Confidence 873
No 40
>PRK11546 zraP zinc resistance protein; Provisional
Probab=24.06 E-value=56 Score=26.24 Aligned_cols=25 Identities=16% Similarity=0.350 Sum_probs=20.4
Q ss_pred CcccccCcccCCHHHHHHHHHHhhcC
Q 028253 163 NWWEANNYQALTAMEARRYRWVRLNH 188 (211)
Q Consensus 163 ~~~~~~~~~~l~~~~~~~~~~~~~~~ 188 (211)
.|| +..|..||++|+++++.++++|
T Consensus 35 G~~-~~~~~~LT~EQQa~~q~I~~~f 59 (143)
T PRK11546 35 GMW-QQNAAPLTTEQQAAWQKIHNDF 59 (143)
T ss_pred CCC-ccccccCCHHHHHHHHHHHHHH
Confidence 455 4567899999999999998876
No 41
>cd00070 GLECT Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation.
Probab=23.49 E-value=2.8e+02 Score=20.81 Aligned_cols=68 Identities=13% Similarity=0.173 Sum_probs=43.5
Q ss_pred CCcEEEEEcCCCCCCCcEEEEEEEeCC-----------CCCcceeEe-cCCCCCCCcEEEEEEEcCCeEEEEECCeEEEE
Q 028253 27 RDELDFEFLGNRTGQPYTVQTNIYANG-----------KGDREQRVN-LWFDPAADYHLYTILWNHHHIVFYVDDVPIRV 94 (211)
Q Consensus 27 ~dEIDiE~lG~~~g~p~~~~tn~~~~g-----------~~~~~~~~~-l~fdp~~dFH~Y~i~W~~~~I~fyVDg~~vr~ 94 (211)
.+.+-|.+..... ...+|.|.--.. .=+.|++.. .+|-+-+ ...-.|.=+++....+|||+.+..
T Consensus 26 ~~~f~Inl~~~~~--~i~lH~n~rf~~~~IV~Ns~~~g~Wg~Eer~~~~pf~~g~-~F~l~i~~~~~~f~i~vng~~~~~ 102 (127)
T cd00070 26 AKRFSINLGTGSS--DIALHFNPRFDENVIVRNSFLNGNWGPEERSGGFPFQPGQ-PFELTILVEEDKFQIFVNGQHFFS 102 (127)
T ss_pred CCEEEEEEecCCC--CEEEEEeeeCCCCEEEEcCCCCCEecHhhccCCCCCCCCC-eEEEEEEEcCCEEEEEECCEeEEE
Confidence 4566677765432 346676663221 113444443 4555444 448888889999999999999988
Q ss_pred EeC
Q 028253 95 YKN 97 (211)
Q Consensus 95 ~~~ 97 (211)
+..
T Consensus 103 F~~ 105 (127)
T cd00070 103 FPH 105 (127)
T ss_pred ecC
Confidence 864
No 42
>PF07154 DUF1392: Protein of unknown function (DUF1392); InterPro: IPR009824 This family consists of several hypothetical cyanobacterial proteins of around 150 residues in length, which seem to be specific to Anabaena species. The function of this family is unknown.
Probab=21.42 E-value=3.6e+02 Score=21.77 Aligned_cols=78 Identities=19% Similarity=0.256 Sum_probs=46.7
Q ss_pred EEEecCCCCCceEEEEEEecCC-----CCCCCcEE-E---EEcCCCCCCCcEEEEEEEeCCCC--------CcceeEecC
Q 028253 2 KIKLVPGDSAGTVTAFYMNSNT-----ENVRDELD-F---EFLGNRTGQPYTVQTNIYANGKG--------DREQRVNLW 64 (211)
Q Consensus 2 riKl~~~~s~G~v~Afwl~s~~-----~~~~dEID-i---E~lG~~~g~p~~~~tn~~~~g~~--------~~~~~~~l~ 64 (211)
|+=|++.++.|-+-+.=...+. -. ++||= . |++|...-++.+++.-.|.-|+. +..+++-++
T Consensus 32 ~Vylks~~tfGYCcGV~W~~~~W~Y~I~~-~~~il~~t~~eii~tg~~q~~tv~kp~F~LGd~V~~~f~~~~pkqRlIlG 110 (150)
T PF07154_consen 32 RVYLKSTRTFGYCCGVQWEEDCWIYAIVC-HNEILYATKYEIIGTGQLQSLTVQKPAFRLGDRVEFRFYSDGPKQRLILG 110 (150)
T ss_pred eeeecCcCcceeeeeeEEcCCcEEEEEEe-cCceEEeccceEeecCccceeeccCCceecCCEEEEEecCCCCceEEEEE
Confidence 4556777777877776444432 11 34443 2 77776544566777777776652 233444444
Q ss_pred CCCCCCcEEEEEEEcC
Q 028253 65 FDPAADYHLYTILWNH 80 (211)
Q Consensus 65 fdp~~dFH~Y~i~W~~ 80 (211)
.-.-+++--|.|||-.
T Consensus 111 v~lv~~~W~Y~VE~~S 126 (150)
T PF07154_consen 111 VFLVNNSWFYAVEWRS 126 (150)
T ss_pred EEEecCceEEEEEEeC
Confidence 4445778889999943
No 43
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=20.86 E-value=3.2e+02 Score=27.41 Aligned_cols=58 Identities=17% Similarity=0.364 Sum_probs=37.5
Q ss_pred CCCcEEEEEEEcCCeEEEEECCeEEEEEeCCCCCCCCCCCCceEEEeeeeCCCcccCCCCcccCCCCCCEEEEEeEEEEe
Q 028253 68 AADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDIE 147 (211)
Q Consensus 68 ~~dFH~Y~i~W~~~~I~fyVDg~~vr~~~~~~~~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~~v~v~ 147 (211)
+..||+-+|-=+-+.|+=++||++|.+... ..+|. ..|+ + |- +..-..++||+|+|+
T Consensus 610 ~~~WhtltL~~~g~~~ta~lng~~l~~~~~---~~~p~-------------~G~a---a---IG-T~~~~~~QFDNf~V~ 666 (669)
T PF02057_consen 610 AGKWHTLTLTISGSTATAMLNGTVLWTDVD---SSYPK-------------NGWA---A---IG-TSSFETAQFDNFSVE 666 (669)
T ss_dssp TT-EEEEEEEEETTEEEEEETTEEEEEEEE-----SS----------------EE---E---EE-ESSS--EEEEEEEEE
T ss_pred CCeEEEEEEEEECCEEEEEECCEEeEEecc---cCCCC-------------CceE---E---EE-cCCCceeEeeeeEEE
Confidence 467999999999999999999999987532 35551 1233 1 11 111235899999998
Q ss_pred e
Q 028253 148 G 148 (211)
Q Consensus 148 ~ 148 (211)
+
T Consensus 667 a 667 (669)
T PF02057_consen 667 A 667 (669)
T ss_dssp E
T ss_pred e
Confidence 6
No 44
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=20.28 E-value=1.3e+02 Score=21.17 Aligned_cols=18 Identities=17% Similarity=0.355 Sum_probs=14.5
Q ss_pred CeEEEEECCeEEEEEeCC
Q 028253 81 HHIVFYVDDVPIRVYKNS 98 (211)
Q Consensus 81 ~~I~fyVDg~~vr~~~~~ 98 (211)
+.|+|+|||+++......
T Consensus 2 ~~v~i~idG~~v~~~~G~ 19 (82)
T PF13510_consen 2 KMVTITIDGKPVEVPPGE 19 (82)
T ss_dssp EEEEEEETTEEEEEEET-
T ss_pred CEEEEEECCEEEEEcCCC
Confidence 479999999999887653
Done!