BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028254
(211 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 96/210 (45%), Gaps = 13/210 (6%)
Query: 6 QLPVIDLSSPD------RLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSL 59
Q+P IDL + + R + + +++A +D+G +L+NHG+ +L+ ++ ++FFSL
Sbjct: 46 QVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSL 105
Query: 60 QLEDKMKLARKEHRGYTALCDEILDPSSTSEGDPKESFYIGPLEGTLSSMNQWPSLEILP 119
+E+K K A + G L +++ + + ++ F+ ++ WP P
Sbjct: 106 SVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPK---TP 162
Query: 120 T--WRSTMEYYHQKVLSAGXXXXXXXXXXXXXXEDFFEKVGALDAPMAFLRLLHYPGELV 177
+ +T EY L A + ++VG L+ + +++ +YP
Sbjct: 163 SDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPK--C 220
Query: 178 SSNQEVCGASAHSDYGMITLLATDGVPGLQ 207
+ G AH+D +T + + VPGLQ
Sbjct: 221 PQPELALGVEAHTDVSALTFILHNMVPGLQ 250
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 96/210 (45%), Gaps = 13/210 (6%)
Query: 6 QLPVIDLSSPD------RLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSL 59
Q+P IDL + + R + + +++A +D+G +L+NHG+ +L+ ++ ++FFSL
Sbjct: 45 QVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSL 104
Query: 60 QLEDKMKLARKEHRGYTALCDEILDPSSTSEGDPKESFYIGPLEGTLSSMNQWPSLEILP 119
+E+K K A + G L +++ + + ++ F+ ++ WP P
Sbjct: 105 SVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPK---TP 161
Query: 120 T--WRSTMEYYHQKVLSAGXXXXXXXXXXXXXXEDFFEKVGALDAPMAFLRLLHYPGELV 177
+ +T EY L A + ++VG L+ + +++ +YP
Sbjct: 162 SDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPK--C 219
Query: 178 SSNQEVCGASAHSDYGMITLLATDGVPGLQ 207
+ G AH+D +T + + VPGLQ
Sbjct: 220 PQPELALGVEAHTDVSALTFILHNMVPGLQ 249
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 94/210 (44%), Gaps = 13/210 (6%)
Query: 6 QLPVIDLSSPD------RLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSL 59
Q+P IDL + + R + + +++A +D+G +L+NHG+ +L ++ ++FFSL
Sbjct: 46 QVPTIDLKNIESDDEKIRENCIEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSL 105
Query: 60 QLEDKMKLARKEHRGYTALCDEILDPSSTSEGDPKESFYIGPLEGTLSSMNQWPSLEILP 119
+E+K K A + G L +++ + + ++ F+ ++ WP P
Sbjct: 106 SVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPK---TP 162
Query: 120 T--WRSTMEYYHQKVLSAGXXXXXXXXXXXXXXEDFFEKVGALDAPMAFLRLLHYPGELV 177
+ +T EY L A + ++VG L+ + ++ +YP
Sbjct: 163 SDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQXKINYYPK--C 220
Query: 178 SSNQEVCGASAHSDYGMITLLATDGVPGLQ 207
+ G AH+D +T + + VPGLQ
Sbjct: 221 PQPELALGVEAHTDVSALTFILHNXVPGLQ 250
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 89/217 (41%), Gaps = 40/217 (18%)
Query: 6 QLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKM 65
+L ID + D +AK ++ + GF L NH +++EL+ +++ E + FF+ + +++
Sbjct: 3 KLETIDYRAAD---SAKRFVESLRETGFGVLSNHPIDKELVERIYTEWQAFFNSEAKNEF 59
Query: 66 KLARKEHRGYTALCDEILDPSSTSE-------GDPKESFYIGPLEGTLSSMNQWPSLEIL 118
R+ H G+ P+S SE D KE +++ P S+
Sbjct: 60 XFNRETHDGFF--------PASISETAKGHTVKDIKEYYHVYPWGRIPDSL--------- 102
Query: 119 PTWRSTMEYYHQKVLSAGXXXXXXXXXXXXXXEDFFEKVGALDAP-------MAFLRLLH 171
R+ + Y++K A D + ++ P LR+LH
Sbjct: 103 ---RANILAYYEK---ANTLASELLEWIETYSPDEIKAKFSIPLPEXIANSHKTLLRILH 156
Query: 172 YPGELVSSNQEVCGASAHSDYGMITLLATDGVPGLQA 208
YP A+AH D +IT+L T PGLQ
Sbjct: 157 YPPXTGDEEXGAIRAAAHEDINLITVLPTANEPGLQV 193
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 89/232 (38%), Gaps = 37/232 (15%)
Query: 6 QLPVIDLS------SPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKF-FS 58
+P ID+S ++ A+ I A D GFFY VNHG+ + +SQ ++K+F S
Sbjct: 8 NVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQ---KTKEFHMS 64
Query: 59 LQLEDKMKLA----RKEHRGYTALCDEILDPSSTSEGDPKESF-YIGP----------LE 103
+ E+K LA KEH+ + P + ESF Y+ P +
Sbjct: 65 ITPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKA----VESFCYLNPNFTPDHPRIQAK 120
Query: 104 GTLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGXXXXXXXXXXXXXXEDFFEKVGALDAP 163
+N WP P ++ E Y+ V E+FF + D
Sbjct: 121 TPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDT 180
Query: 164 MAFLRLLHYP--------GELVSSNQEVCGASAHSDYGMITLLATDGVPGLQ 207
+A + L+ YP +++ H D +IT+L V LQ
Sbjct: 181 LASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQ 232
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 89/232 (38%), Gaps = 37/232 (15%)
Query: 6 QLPVIDLS------SPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKF-FS 58
+P ID+S ++ A+ I A D GFFY VNHG+ + +SQ ++K+F S
Sbjct: 8 NVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQ---KTKEFHMS 64
Query: 59 LQLEDKMKLA----RKEHRGYTALCDEILDPSSTSEGDPKESF-YIGP----------LE 103
+ E+K LA KEH+ + P + ESF Y+ P +
Sbjct: 65 ITPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKA----VESFCYLNPNFTPDHPRIQAK 120
Query: 104 GTLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGXXXXXXXXXXXXXXEDFFEKVGALDAP 163
+N WP P ++ E Y+ V E+FF + D
Sbjct: 121 TPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDT 180
Query: 164 MAFLRLLHYP--------GELVSSNQEVCGASAHSDYGMITLLATDGVPGLQ 207
+A + L+ YP +++ H D +IT+L V LQ
Sbjct: 181 LASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQ 232
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 81/205 (39%), Gaps = 16/205 (7%)
Query: 2 TEALQLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQL 61
T A+ L + D A+ + + YGF L ++ +++ I + +K FF+L +
Sbjct: 4 TSAIDPVSFSLYAKDFTRFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPV 63
Query: 62 EDKMKLA--RKEHRGYTALCDEILDPSSTSEGDPKESFYIG---PLEGTLSSM---NQWP 113
E K + A + RGY E D KE ++ G P + N WP
Sbjct: 64 ETKKQYAGVKGGARGYIPFGVETA--KGADHYDLKEFWHXGRDLPPGHRFRAHXADNVWP 121
Query: 114 SLEILPTWRSTMEYYHQKVLSAGXXXXXXXXXXXXXXEDFFEKVGALDAPMAFLRLLHYP 173
+ +P ++ + + + + G DFF+ + + LRLLHYP
Sbjct: 122 AE--IPAFKHDVSWLYNSLDGXGGKVLEAIATYLKLERDFFKPT--VQDGNSVLRLLHYP 177
Query: 174 GELVSSNQEVCGASAHSDYGMITLL 198
+ + A AH D ITLL
Sbjct: 178 P--IPKDATGVRAGAHGDINTITLL 200
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 16/116 (13%)
Query: 6 QLPVIDL---SSPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLE 62
P+I L + +R +T + I+ AC ++GFF LVNHG+ E+ + +K + E
Sbjct: 3 NFPIISLDKVNGVERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXE 62
Query: 63 DKMK--LARKEHRGYTALCDEILDPSSTSEGDPKESFYIGPLEGTLSSMNQWPSLE 116
+ K +A K G A ++ D + +F++ L +S++++ P L+
Sbjct: 63 QRFKELVASKALEGVQA---------EVTDXDWESTFFLKHL--PISNISEVPDLD 107
>pdb|2VC5|A Chain A, Structural Basis For Natural Lactonase And Promiscuous
Phosphotriesterase Activities
pdb|2VC5|B Chain B, Structural Basis For Natural Lactonase And Promiscuous
Phosphotriesterase Activities
pdb|2VC5|C Chain C, Structural Basis For Natural Lactonase And Promiscuous
Phosphotriesterase Activities
pdb|2VC5|D Chain D, Structural Basis For Natural Lactonase And Promiscuous
Phosphotriesterase Activities
pdb|2VC7|A Chain A, Structural Basis For Natural Lactonase And Promiscuous
Phosphotriesterase Activities
pdb|2VC7|B Chain B, Structural Basis For Natural Lactonase And Promiscuous
Phosphotriesterase Activities
pdb|2VC7|C Chain C, Structural Basis For Natural Lactonase And Promiscuous
Phosphotriesterase Activities
pdb|2VC7|D Chain D, Structural Basis For Natural Lactonase And Promiscuous
Phosphotriesterase Activities
pdb|3UF9|A Chain A, Crystal Structure Of Ssopox In Complex With The
Phosphotriester Fensulfothion
pdb|3UF9|B Chain B, Crystal Structure Of Ssopox In Complex With The
Phosphotriester Fensulfothion
pdb|3UF9|C Chain C, Crystal Structure Of Ssopox In Complex With The
Phosphotriester Fensulfothion
pdb|3UF9|D Chain D, Crystal Structure Of Ssopox In Complex With The
Phosphotriester Fensulfothion
Length = 314
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Query: 35 YLVNHGVEEELISQMFNES-KKFFS 58
+L +GV EE+I+ +F E+ KKFFS
Sbjct: 290 FLKRNGVNEEVIATIFKENPKKFFS 314
>pdb|2PZI|A Chain A, Crystal Structure Of Protein Kinase Pkng From
Mycobacterium Tuberculosis In Complex With
Tetrahydrobenzothiophene Ax20017
pdb|2PZI|B Chain B, Crystal Structure Of Protein Kinase Pkng From
Mycobacterium Tuberculosis In Complex With
Tetrahydrobenzothiophene Ax20017
Length = 681
Score = 27.7 bits (60), Expect = 5.4, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 162 APMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDGVPG 205
+P +FL L+ PG++V+ EV G AH G I L V G
Sbjct: 64 SPYSFLPQLN-PGDIVAGQYEVKGCIAHGGLGWIYLALDRNVNG 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,828,528
Number of Sequences: 62578
Number of extensions: 206397
Number of successful extensions: 477
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 463
Number of HSP's gapped (non-prelim): 12
length of query: 211
length of database: 14,973,337
effective HSP length: 95
effective length of query: 116
effective length of database: 9,028,427
effective search space: 1047297532
effective search space used: 1047297532
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)