Query 028254
Match_columns 211
No_of_seqs 221 out of 1073
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 08:39:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028254.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028254hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03002 oxidoreductase, 2OG-F 100.0 1.9E-53 4E-58 352.5 22.0 206 4-210 12-226 (332)
2 COG3491 PcbC Isopenicillin N s 100.0 1.1E-51 2.4E-56 326.6 18.8 196 4-210 3-217 (322)
3 PLN02997 flavonol synthase 100.0 3E-51 6.6E-56 337.8 20.6 193 4-210 30-226 (325)
4 PTZ00273 oxidase reductase; Pr 100.0 2.8E-51 6.2E-56 338.8 20.4 202 1-210 1-221 (320)
5 PLN02254 gibberellin 3-beta-di 100.0 7.6E-51 1.6E-55 339.2 20.1 193 5-210 55-253 (358)
6 PLN02485 oxidoreductase 100.0 3.2E-50 7E-55 333.5 20.7 203 1-210 1-232 (329)
7 PLN02515 naringenin,2-oxogluta 100.0 3.6E-50 7.8E-55 335.1 19.9 195 5-210 36-238 (358)
8 PLN02216 protein SRG1 100.0 2.8E-50 6E-55 336.2 19.2 196 5-210 51-254 (357)
9 PLN02758 oxidoreductase, 2OG-F 100.0 3.3E-50 7.2E-55 336.1 19.4 197 4-210 50-256 (361)
10 PLN02276 gibberellin 20-oxidas 100.0 3.5E-50 7.6E-55 336.2 19.5 196 5-210 39-249 (361)
11 PLN02750 oxidoreductase, 2OG-F 100.0 1.2E-49 2.6E-54 331.5 20.3 194 4-209 24-235 (345)
12 PLN02299 1-aminocyclopropane-1 100.0 2.3E-49 5E-54 326.3 19.4 195 1-210 1-202 (321)
13 PLN02704 flavonol synthase 100.0 2E-49 4.4E-54 329.0 19.2 196 4-210 40-242 (335)
14 PLN03178 leucoanthocyanidin di 100.0 2.3E-49 5.1E-54 331.3 19.3 196 4-210 45-254 (360)
15 PLN02912 oxidoreductase, 2OG-F 100.0 3.6E-49 7.8E-54 328.4 19.5 195 4-210 39-240 (348)
16 PLN00417 oxidoreductase, 2OG-F 100.0 6.3E-49 1.4E-53 327.0 20.3 197 4-210 42-247 (348)
17 PLN02639 oxidoreductase, 2OG-F 100.0 8.2E-49 1.8E-53 325.6 20.0 193 5-210 36-234 (337)
18 PLN02393 leucoanthocyanidin di 100.0 1.5E-48 3.2E-53 326.6 19.7 196 4-210 49-257 (362)
19 PLN02947 oxidoreductase 100.0 3.5E-48 7.6E-53 324.6 20.2 195 4-210 64-268 (374)
20 PLN02156 gibberellin 2-beta-di 100.0 4.8E-48 1E-52 319.5 19.5 193 5-209 25-222 (335)
21 PLN02984 oxidoreductase, 2OG-F 100.0 7.4E-48 1.6E-52 319.1 19.3 197 4-210 36-243 (341)
22 PLN02904 oxidoreductase 100.0 4.2E-47 9E-52 316.8 19.8 196 5-210 50-250 (357)
23 KOG0143 Iron/ascorbate family 100.0 8E-47 1.7E-51 310.5 20.2 196 4-210 15-220 (322)
24 PLN02365 2-oxoglutarate-depend 100.0 7.2E-47 1.6E-51 309.4 19.3 189 1-210 1-193 (300)
25 PLN02403 aminocyclopropanecarb 100.0 1.1E-46 2.4E-51 307.8 18.7 188 6-210 2-197 (303)
26 PLN03001 oxidoreductase, 2OG-F 100.0 2.7E-35 5.9E-40 236.1 13.0 153 49-210 1-159 (262)
27 PF14226 DIOX_N: non-haem diox 100.0 8.4E-29 1.8E-33 176.1 7.1 105 7-114 1-115 (116)
28 PLN03176 flavanone-3-hydroxyla 99.8 8.8E-21 1.9E-25 134.8 9.4 73 5-77 36-115 (120)
29 PF03171 2OG-FeII_Oxy: 2OG-Fe( 98.9 1.2E-09 2.7E-14 74.9 2.5 41 165-210 2-44 (98)
30 PRK08130 putative aldolase; Va 89.7 0.49 1.1E-05 36.9 3.9 37 6-42 127-163 (213)
31 PRK08333 L-fuculose phosphate 88.8 0.59 1.3E-05 35.6 3.7 37 6-42 120-156 (184)
32 PF07350 DUF1479: Protein of u 87.1 0.56 1.2E-05 40.3 2.9 54 4-58 47-100 (416)
33 PRK05874 L-fuculose-phosphate 85.4 1.1 2.4E-05 35.1 3.6 37 6-42 127-163 (217)
34 PRK06833 L-fuculose phosphate 82.4 1.7 3.6E-05 34.0 3.5 37 6-42 124-160 (214)
35 PRK08660 L-fuculose phosphate 82.3 2.1 4.5E-05 32.5 3.9 35 6-41 115-149 (181)
36 PRK08087 L-fuculose phosphate 82.1 2 4.3E-05 33.6 3.8 37 6-42 122-158 (215)
37 PF00596 Aldolase_II: Class II 82.0 0.84 1.8E-05 34.6 1.6 37 5-41 122-159 (184)
38 PRK03634 rhamnulose-1-phosphat 79.5 2.4 5.2E-05 34.5 3.6 37 6-42 179-215 (274)
39 PRK06755 hypothetical protein; 78.7 2 4.2E-05 33.6 2.7 37 6-42 136-172 (209)
40 TIGR01086 fucA L-fuculose phos 77.7 2.9 6.2E-05 32.7 3.4 36 6-41 121-156 (214)
41 TIGR02624 rhamnu_1P_ald rhamnu 77.3 3 6.5E-05 33.9 3.5 37 6-42 177-213 (270)
42 PRK06357 hypothetical protein; 75.2 4.9 0.00011 31.5 4.1 37 6-42 130-172 (216)
43 PRK06557 L-ribulose-5-phosphat 75.1 3.2 7E-05 32.5 3.0 37 6-42 130-168 (221)
44 TIGR02409 carnitine_bodg gamma 74.5 5.4 0.00012 33.8 4.4 51 5-58 108-159 (366)
45 TIGR03328 salvage_mtnB methylt 74.4 4.3 9.4E-05 31.1 3.5 36 6-42 126-164 (193)
46 cd00398 Aldolase_II Class II A 72.8 2.8 6E-05 32.5 2.2 38 5-42 121-160 (209)
47 PF11243 DUF3045: Protein of u 66.0 6 0.00013 25.6 2.2 22 21-42 35-56 (89)
48 PRK09553 tauD taurine dioxygen 65.3 13 0.00029 30.1 4.8 50 7-59 16-65 (277)
49 PRK07490 hypothetical protein; 65.3 7.6 0.00016 31.0 3.2 36 6-41 133-169 (245)
50 PRK06661 hypothetical protein; 62.2 9.2 0.0002 30.3 3.2 37 6-42 123-161 (231)
51 PRK05834 hypothetical protein; 57.7 14 0.0003 28.4 3.4 36 6-41 121-160 (194)
52 COG0289 DapB Dihydrodipicolina 57.1 35 0.00076 27.6 5.6 44 9-55 73-117 (266)
53 PRK06754 mtnB methylthioribulo 56.6 12 0.00026 29.0 3.0 33 7-41 138-172 (208)
54 PF01113 DapB_N: Dihydrodipico 50.5 24 0.00053 24.8 3.5 44 9-55 71-115 (124)
55 TIGR02410 carnitine_TMLD trime 50.4 26 0.00057 29.7 4.2 49 6-57 100-150 (362)
56 PF03668 ATP_bind_2: P-loop AT 50.3 25 0.00054 28.8 3.8 29 24-54 17-45 (284)
57 PF10055 DUF2292: Uncharacteri 50.0 11 0.00023 20.9 1.2 13 190-202 13-25 (38)
58 TIGR03581 EF_0839 conserved hy 47.3 51 0.0011 25.9 4.9 40 15-55 160-200 (236)
59 PRK08193 araD L-ribulose-5-pho 47.0 32 0.00068 27.2 3.9 37 6-42 124-173 (231)
60 PRK09220 methylthioribulose-1- 46.5 27 0.00059 27.0 3.4 35 6-41 134-171 (204)
61 PRK07044 aldolase II superfami 46.4 27 0.00058 28.0 3.5 37 6-42 138-175 (252)
62 PF13640 2OG-FeII_Oxy_3: 2OG-F 45.4 8.2 0.00018 25.7 0.4 26 167-200 1-31 (100)
63 PF01471 PG_binding_1: Putativ 42.1 36 0.00077 20.0 2.8 42 19-60 3-44 (57)
64 TIGR02130 dapB_plant dihydrodi 40.3 60 0.0013 26.5 4.6 39 8-49 72-111 (275)
65 PRK06486 hypothetical protein; 40.3 33 0.00072 27.7 3.2 37 6-42 148-186 (262)
66 cd00379 Ribosomal_L10_P0 Ribos 37.4 1.4E+02 0.0029 21.6 5.9 38 18-55 4-42 (155)
67 PF11548 Receptor_IA-2: Protei 35.8 30 0.00065 23.2 1.8 34 136-170 19-52 (91)
68 smart00702 P4Hc Prolyl 4-hydro 35.3 74 0.0016 23.6 4.3 51 135-200 60-118 (178)
69 PF07283 TrbH: Conjugal transf 35.2 51 0.0011 23.4 3.0 34 9-42 26-59 (121)
70 PF02668 TauD: Taurine catabol 34.6 79 0.0017 24.7 4.5 35 19-56 24-58 (258)
71 PF11043 DUF2856: Protein of u 34.0 65 0.0014 20.9 3.1 24 43-66 20-43 (97)
72 TIGR00760 araD L-ribulose-5-ph 33.4 61 0.0013 25.6 3.7 36 6-41 125-173 (231)
73 PLN02452 phosphoserine transam 32.3 95 0.0021 26.4 4.8 49 7-56 300-360 (365)
74 PF01361 Tautomerase: Tautomer 32.0 75 0.0016 18.8 3.2 26 130-155 14-39 (60)
75 PRK08324 short chain dehydroge 31.8 1.6E+02 0.0034 27.4 6.5 51 6-57 155-217 (681)
76 PRK13883 conjugal transfer pro 31.8 82 0.0018 23.3 3.8 34 9-42 54-87 (151)
77 PRK01964 4-oxalocrotonate taut 31.5 74 0.0016 19.2 3.1 25 130-154 15-39 (64)
78 PF12368 DUF3650: Protein of u 30.9 23 0.0005 18.1 0.6 17 34-50 9-25 (28)
79 cd05797 Ribosomal_L10 Ribosoma 30.5 2E+02 0.0044 20.9 5.9 38 18-55 6-44 (157)
80 PF01381 HTH_3: Helix-turn-hel 29.6 15 0.00033 21.3 -0.3 20 134-153 35-54 (55)
81 PF03460 NIR_SIR_ferr: Nitrite 29.5 86 0.0019 19.1 3.2 38 18-55 23-68 (69)
82 COG1660 Predicted P-loop-conta 29.2 83 0.0018 25.7 3.7 27 25-53 18-44 (286)
83 PF08823 PG_binding_2: Putativ 29.1 97 0.0021 19.8 3.4 34 18-51 15-48 (74)
84 PRK02220 4-oxalocrotonate taut 29.1 87 0.0019 18.5 3.1 25 130-154 15-39 (61)
85 TIGR01573 cas2 CRISPR-associat 28.9 64 0.0014 21.6 2.6 49 9-57 6-59 (95)
86 PRK02289 4-oxalocrotonate taut 28.6 74 0.0016 19.0 2.7 26 130-155 15-40 (60)
87 COG1402 Uncharacterized protei 28.5 2E+02 0.0043 23.2 5.8 40 18-57 89-131 (250)
88 PLN02775 Probable dihydrodipic 28.4 1.4E+02 0.0031 24.5 5.0 37 8-47 83-120 (286)
89 PF13443 HTH_26: Cro/C1-type H 28.2 54 0.0012 19.5 2.0 34 122-155 24-58 (63)
90 PRK15331 chaperone protein Sic 27.9 64 0.0014 24.2 2.7 41 18-59 10-50 (165)
91 PRK00745 4-oxalocrotonate taut 27.8 99 0.0022 18.3 3.2 25 130-154 15-39 (62)
92 cd00491 4Oxalocrotonate_Tautom 27.7 89 0.0019 18.2 2.9 25 130-154 14-38 (58)
93 TIGR00013 taut 4-oxalocrotonat 26.8 1E+02 0.0022 18.3 3.2 25 130-154 15-39 (63)
94 PRK00099 rplJ 50S ribosomal pr 26.8 2.5E+02 0.0055 20.8 5.9 38 18-55 7-45 (172)
95 cd05796 Ribosomal_P0_like Ribo 26.4 2.1E+02 0.0045 21.2 5.3 38 18-55 4-42 (163)
96 PRK13835 conjugal transfer pro 26.1 88 0.0019 22.9 3.0 28 9-37 60-87 (145)
97 PRK00766 hypothetical protein; 25.9 3E+02 0.0065 21.2 6.1 36 32-67 145-180 (194)
98 PF02633 Creatininase: Creatin 25.3 1.6E+02 0.0034 23.2 4.7 34 18-51 85-121 (237)
99 TIGR01565 homeo_ZF_HD homeobox 24.7 70 0.0015 19.4 2.0 36 120-155 11-50 (58)
100 PRK06208 hypothetical protein; 24.5 73 0.0016 26.0 2.7 37 6-42 163-201 (274)
101 cd05795 Ribosomal_P0_L10e Ribo 24.4 2.6E+02 0.0056 21.0 5.5 38 18-55 4-42 (175)
102 PF00046 Homeobox: Homeobox do 23.7 70 0.0015 18.6 1.9 36 119-154 9-44 (57)
103 PRK10628 LigB family dioxygena 23.6 1.1E+02 0.0024 24.6 3.5 39 1-40 105-148 (246)
104 PTZ00397 macrophage migration 23.4 99 0.0021 21.3 2.9 25 130-154 72-96 (116)
105 COG5589 Uncharacterized conser 23.3 2.3E+02 0.0049 20.7 4.6 35 108-143 87-124 (164)
106 COG3113 Predicted NTP binding 23.0 1.8E+02 0.004 19.8 3.9 50 7-62 41-95 (99)
107 cd00250 CAS_like Clavaminic ac 22.5 1.6E+02 0.0036 23.3 4.4 48 6-56 18-66 (262)
108 PF07071 DUF1341: Protein of u 22.2 1.9E+02 0.0042 22.6 4.4 39 15-54 160-199 (218)
109 PF10509 GalKase_gal_bdg: Gala 22.0 47 0.001 19.6 0.9 14 185-198 24-37 (52)
110 PF00356 LacI: Bacterial regul 21.8 95 0.0021 17.7 2.1 18 17-34 27-44 (46)
111 TIGR00568 alkb DNA alkylation 21.8 1.3E+02 0.0028 22.6 3.4 19 166-192 96-114 (169)
112 COG0235 AraD Ribulose-5-phosph 21.5 33 0.00071 26.9 0.1 36 6-41 127-164 (219)
113 PF01187 MIF: Macrophage migra 21.4 1.2E+02 0.0027 20.8 3.1 25 130-154 70-94 (114)
114 TIGR00036 dapB dihydrodipicoli 21.2 2.6E+02 0.0056 22.5 5.3 44 9-55 72-116 (266)
115 COG1724 Predicted RNA binding 21.2 1.3E+02 0.0029 18.8 2.7 20 21-40 9-28 (66)
116 PF08066 PMC2NT: PMC2NT (NUC01 20.9 1.7E+02 0.0038 19.2 3.6 28 121-148 18-46 (91)
117 COG4951 Uncharacterized protei 20.7 1.1E+02 0.0024 25.0 2.9 27 7-33 128-154 (361)
118 COG3100 Uncharacterized protei 20.6 2.8E+02 0.0061 18.7 4.4 29 20-49 66-94 (103)
119 PF07927 YcfA: YcfA-like prote 20.6 1.3E+02 0.0028 17.4 2.7 17 22-38 2-18 (56)
120 TIGR02763 chlamy_scaf chlamydi 20.5 2.5E+02 0.0054 19.3 4.1 46 24-70 14-61 (114)
121 COG0244 RplJ Ribosomal protein 20.4 3.8E+02 0.0082 20.2 5.7 38 18-55 9-47 (175)
122 PF08921 DUF1904: Domain of un 20.4 1.4E+02 0.0031 20.6 3.1 26 130-155 12-37 (108)
123 PF14133 DUF4300: Domain of un 20.2 2.2E+02 0.0047 23.0 4.5 39 12-58 3-41 (250)
124 smart00796 AHS1 Allophanate hy 20.1 2.7E+02 0.0058 21.5 4.9 38 167-209 147-185 (201)
No 1
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=1.9e-53 Score=352.53 Aligned_cols=206 Identities=47% Similarity=0.855 Sum_probs=175.1
Q ss_pred CCCCCeEeCCCcchHHHHHHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhhcccC-Ccccccccccc
Q 028254 4 ALQLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKE-HRGYTALCDEI 82 (211)
Q Consensus 4 ~~~iP~IDl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~-~~Gy~~~~~e~ 82 (211)
...||+|||+..++..++++|.+||++||||||+||||+.++++++++++++||+||.|+|+++.... ++||.+.+.+.
T Consensus 12 ~~~iP~IDl~~~~~~~~~~~l~~Ac~~~GFf~l~nHGI~~~l~~~~~~~~~~FF~LP~e~K~k~~~~~~~~GY~~~~~e~ 91 (332)
T PLN03002 12 VSSLNCIDLANDDLNHSVASLKQACLDCGFFYVINHGINEEFMDDVFEQSKKFFALPLEEKMKVLRNEKHRGYTPVLDEK 91 (332)
T ss_pred CCCCCEEeCCchhHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccCCCCCCcCcccccc
Confidence 45899999997666678999999999999999999999999999999999999999999999987655 89999887776
Q ss_pred cCCCCCCCCCcccccccCC--CCCC------CCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhh
Q 028254 83 LDPSSTSEGDPKESFYIGP--LEGT------LSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFF 154 (211)
Q Consensus 83 ~~~~~~~~~d~~E~~~~~~--~~~~------~~~~n~wP~~~~~~~f~~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~ 154 (211)
.+.......|++|.|+++. +... ..++|.||.++.+|+||+.+++|+++|.+|+..|+++||++|||++++|
T Consensus 92 ~~~~~~~~~d~kE~f~~~~~~p~~~~~~~~~~~~~n~wP~~~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f 171 (332)
T PLN03002 92 LDPKNQINGDHKEGYYIGIEVPKDDPHWDKPFYGPNPWPDADVLPGWRETMEKYHQEALRVSMAIAKLLALALDLDVGYF 171 (332)
T ss_pred cccccCCCCcceeeeEecccCCCCCccccccccCCCCCcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHh
Confidence 5433223479999999883 2111 1257999975457899999999999999999999999999999999999
Q ss_pred hcccccCCCcccceeccCCCCCCCCCCCccccccccccCcceeEecCCCCCceeec
Q 028254 155 EKVGALDAPMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDGVPGLQACL 210 (211)
Q Consensus 155 ~~~~~~~~~~~~lr~~~Yp~~~~~~~~~~~~~~~HtD~g~lTiL~qd~~~GLQV~~ 210 (211)
.+.+.++.+.+.||++|||+|+.. ....+|+++|||+|+||||+||+++||||++
T Consensus 172 ~~~~~~~~~~~~lrl~~YP~~~~~-~~~~~g~~~HTD~g~lTlL~qd~v~GLQV~~ 226 (332)
T PLN03002 172 DRTEMLGKPIATMRLLRYQGISDP-SKGIYACGAHSDFGMMTLLATDGVMGLQICK 226 (332)
T ss_pred ccccccCCCchheeeeeCCCCCCc-ccCccccccccCCCeEEEEeeCCCCceEEec
Confidence 853455666788999999998753 2357899999999999999999999999974
No 2
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only]
Probab=100.00 E-value=1.1e-51 Score=326.63 Aligned_cols=196 Identities=42% Similarity=0.737 Sum_probs=173.4
Q ss_pred CCCCCeEeCCC-----c-chHHHHHHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhhcccC---Ccc
Q 028254 4 ALQLPVIDLSS-----P-DRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKE---HRG 74 (211)
Q Consensus 4 ~~~iP~IDl~~-----~-~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~---~~G 74 (211)
+..||+|||+. + ++...+++|++||++||||||+||||+..+++++++++++||+||.|+|.++.... ++|
T Consensus 3 ~~~lp~idls~~~~~~~~~~~~~~~~l~~A~r~~GFf~l~~~~i~~~~~~~~~~~arqFFaLp~eeK~~~~~~~~~~~rG 82 (322)
T COG3491 3 TRDLPIIDLSELAGSDPGARRRVAQELRAACREIGFFYLVNHGIDAALIDEAFALARQFFALPVEEKLKILMVLGRQHRG 82 (322)
T ss_pred CCcCceeccHHhcCCCcHHHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHhcCccccc
Confidence 56899999983 1 45677999999999999999999999999999999999999999999999998643 899
Q ss_pred cccccccccCCCCCCCCCcccccccCCCCC----C------CCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 028254 75 YTALCDEILDPSSTSEGDPKESFYIGPLEG----T------LSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIA 144 (211)
Q Consensus 75 y~~~~~e~~~~~~~~~~d~~E~~~~~~~~~----~------~~~~n~wP~~~~~~~f~~~~~~y~~~~~~l~~~ll~~la 144 (211)
|.+.+.|..+ +..||+|.++++.... . ..++|.|| .+|+|++++..|+++|.+++.+||++||
T Consensus 83 Y~~~~~E~t~----g~~d~kE~~d~g~~~~~~~~~~~~~~~~~gpN~wP---~ip~~r~~ll~~~~~~~~~~~rLL~aiA 155 (322)
T COG3491 83 YTPHGGELTD----GEPDYKEGLDMGPDLDAELAGVRAGTPLHGPNLWP---AIPGLRDALLQYYRAMTAVGLRLLRAIA 155 (322)
T ss_pred cccCcccccC----CccchhhhcccccccccccCCCccCCCcCCCCCCc---cchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988754 3469999999994221 0 12899999 4899999999999999999999999999
Q ss_pred HHcCCChhhhhcccccCCCcccceeccCCCCCCCCCCCccccccccccCcceeEecCCCCCceeec
Q 028254 145 LALNLNEDFFEKVGALDAPMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDGVPGLQACL 210 (211)
Q Consensus 145 ~~Lgl~~~~~~~~~~~~~~~~~lr~~~Yp~~~~~~~~~~~~~~~HtD~g~lTiL~qd~~~GLQV~~ 210 (211)
.+|+|++++|+. ..+++.+++|++|||+.+. .++..+.++|||+|+||||+||.++||||+.
T Consensus 156 ~~LdL~~d~Fd~--~~~d~~~~~RLlrYP~~~~--~~~~~~~GaHtD~G~lTLl~Qd~~~GLqv~~ 217 (322)
T COG3491 156 LGLDLPEDFFDK--RTSDPNSVLRLLRYPSRPA--REGADGVGAHTDYGLLTLLFQDDVGGLEVRP 217 (322)
T ss_pred HHcCCChhhhhh--ccCCchheEEEEecCCCcc--cccccccccccCCCeEEEEEecccCCeEEec
Confidence 999999999996 5788999999999998776 4556678999999999999999999999985
No 3
>PLN02997 flavonol synthase
Probab=100.00 E-value=3e-51 Score=337.77 Aligned_cols=193 Identities=30% Similarity=0.476 Sum_probs=164.7
Q ss_pred CCCCCeEeCCCcchHHHHHHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhhcccC-Ccccccccccc
Q 028254 4 ALQLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKE-HRGYTALCDEI 82 (211)
Q Consensus 4 ~~~iP~IDl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~-~~Gy~~~~~e~ 82 (211)
..+|||||++..++.+++++|.+||++||||||+||||+.++++++++++++||+||.|+|+++.... ++||.+...
T Consensus 30 ~~~IPvIDls~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~GY~~~~~-- 107 (325)
T PLN02997 30 AVDVPVVDLSVSDEDFLVREVVKASEEWGVFQVVNHGIPTELMRQLQMVGKQFFELPEAEKETVAKEEDFEGYKRNYL-- 107 (325)
T ss_pred CCCCCeEECCCCCHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhccCCCccccCcccc--
Confidence 44799999997766778999999999999999999999999999999999999999999999987655 889986532
Q ss_pred cCCCCCCCCCcccccccCC-CCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhcccccC
Q 028254 83 LDPSSTSEGDPKESFYIGP-LEGTLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFFEKVGALD 161 (211)
Q Consensus 83 ~~~~~~~~~d~~E~~~~~~-~~~~~~~~n~wP~~~~~~~f~~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~~~~~ 161 (211)
.+..|++|.++... +... ...|.||. .+|+||+++++|++.|.+|+.+|+++|+++||+++++|.+ .+.
T Consensus 108 -----~~~~d~~e~~~~~~~p~~~-~~~n~wP~--~~~~fr~~~~~y~~~~~~l~~~ll~~ia~~Lgl~~~~f~~--~~~ 177 (325)
T PLN02997 108 -----GGINNWDEHLFHRLSPPSI-INYKYWPK--NPPQYREVTEEYTKHMKRLTEKILGWLSEGLGLPRETFTQ--SIG 177 (325)
T ss_pred -----cCCCCccceeEeeecCccc-cccccCCC--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH--Hhc
Confidence 23568899876541 2211 25689997 5789999999999999999999999999999999999986 333
Q ss_pred C--CcccceeccCCCCCCCCCCCccccccccccCcceeEecCCCCCceeec
Q 028254 162 A--PMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDGVPGLQACL 210 (211)
Q Consensus 162 ~--~~~~lr~~~Yp~~~~~~~~~~~~~~~HtD~g~lTiL~qd~~~GLQV~~ 210 (211)
. ..+.||++|||||+. ++..+|+++|||+|+||||+||+++||||++
T Consensus 178 ~~~~~~~lRl~~YP~~~~--~~~~~g~~~HTD~g~lTlL~Qd~v~GLQV~~ 226 (325)
T PLN02997 178 GETAEYVLRVNFYPPTQD--TELVIGAAAHSDMGAIALLIPNEVPGLQAFK 226 (325)
T ss_pred CCcccceeeeecCCCCCC--cccccCccCccCCCceEEEecCCCCCEEEeE
Confidence 2 345899999999976 4567899999999999999999999999975
No 4
>PTZ00273 oxidase reductase; Provisional
Probab=100.00 E-value=2.8e-51 Score=338.75 Aligned_cols=202 Identities=38% Similarity=0.638 Sum_probs=171.6
Q ss_pred CCCCCCCCeEeCCCc------chHHHHHHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhhccc-C--
Q 028254 1 MTEALQLPVIDLSSP------DRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARK-E-- 71 (211)
Q Consensus 1 m~~~~~iP~IDl~~~------~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~-~-- 71 (211)
|| ..+||||||+.. ++.+++++|.+||++||||||+||||+.++++++++++++||+||.|+|+++... .
T Consensus 1 ~~-~~~iPvIDl~~~~~~~~~~~~~~~~~l~~A~~~~Gff~v~nhgi~~~l~~~~~~~~~~fF~lP~e~K~~~~~~~~~~ 79 (320)
T PTZ00273 1 MT-RASLPVIDVSPLFGGESAEKMRVAKQIDEACRTWGFFYIVGHPIPQERIEKVLKMAKTFFSLPMEEKLKIDIRKSRL 79 (320)
T ss_pred CC-CCCCCEEecHHhcCCChHHHHHHHHHHHHHHHhCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhccCCCCC
Confidence 56 668999999832 1345689999999999999999999999999999999999999999999998643 2
Q ss_pred CcccccccccccCCCCCCCCCcccccccCC--CCCC--------CCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 028254 72 HRGYTALCDEILDPSSTSEGDPKESFYIGP--LEGT--------LSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIH 141 (211)
Q Consensus 72 ~~Gy~~~~~e~~~~~~~~~~d~~E~~~~~~--~~~~--------~~~~n~wP~~~~~~~f~~~~~~y~~~~~~l~~~ll~ 141 (211)
++||.+.+.+.... ....|++|+|.++. +... ..++|.||+ .+|+|++++++|++.|.+++..|++
T Consensus 80 ~~GY~~~~~e~~~~--~~~~d~kE~~~~~~~~~~~~~~~~~~~~~~~~n~wP~--~~p~fr~~~~~y~~~~~~l~~~ll~ 155 (320)
T PTZ00273 80 HRGYGAFGAEQLDP--SKPYDYKETFDMGCHLPKDHPDVMAGKPLRGPNNHPT--QVEGWMELMETHYRDMQALALVLLR 155 (320)
T ss_pred CCCCCCccccccCC--CCCCCccceEEeeccCCcccchhhccccccCCCCCCC--cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999888776432 23579999999873 1111 125899997 5789999999999999999999999
Q ss_pred HHHHHcCCChhhhhcccccCCCcccceeccCCCCCCCCCCCccccccccccCcceeEecCCCCCceeec
Q 028254 142 LIALALNLNEDFFEKVGALDAPMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDGVPGLQACL 210 (211)
Q Consensus 142 ~la~~Lgl~~~~~~~~~~~~~~~~~lr~~~Yp~~~~~~~~~~~~~~~HtD~g~lTiL~qd~~~GLQV~~ 210 (211)
+||++||+++++|.+ .+..+.+.+|++||||++.. ++..+|+++|||+|+||||+||.++||||++
T Consensus 156 ~la~~Lgl~~~~f~~--~~~~~~~~lrl~~YP~~~~~-~~~~~g~~~HTD~g~lTlL~qd~~~GLqV~~ 221 (320)
T PTZ00273 156 ALALAIGLREDFFDS--KFMEPLSVFRMKHYPALPQT-KKGRTVCGEHTDYGIITLLYQDSVGGLQVRN 221 (320)
T ss_pred HHHHHhCcCHHHHHH--hhCCCcceeeeeecCCCCCc-cccCcccccccCCCeEEEEecCCCCceEEEC
Confidence 999999999999985 56667789999999998753 3467899999999999999999999999974
No 5
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=100.00 E-value=7.6e-51 Score=339.17 Aligned_cols=193 Identities=27% Similarity=0.410 Sum_probs=163.2
Q ss_pred CCCCeEeCCCcchHHHHHHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhhcccC--Ccccccccccc
Q 028254 5 LQLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKE--HRGYTALCDEI 82 (211)
Q Consensus 5 ~~iP~IDl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~--~~Gy~~~~~e~ 82 (211)
.+||||||++. ..+++|.+||++||||||+||||+.++++++++.+++||+||.|+|+++.... ++||...+...
T Consensus 55 ~~iPvIDl~~~---~~~~~l~~Ac~~~GFF~vvnHGI~~~l~~~~~~~~~~FF~LP~EeK~k~~~~~~~~~Gy~~~~~~~ 131 (358)
T PLN02254 55 ESIPVIDLSDP---NALTLIGHACETWGVFQVTNHGIPLSLLDDIESQTRRLFSLPAQRKLKAARSPDGVSGYGVARISS 131 (358)
T ss_pred CCCCeEeCCCH---HHHHHHHHHHHHCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccCCCCccccccccccc
Confidence 47999999854 46899999999999999999999999999999999999999999999987543 67887654322
Q ss_pred cCCCCCCCCCcccccccCC-CCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhccc---
Q 028254 83 LDPSSTSEGDPKESFYIGP-LEGTLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFFEKVG--- 158 (211)
Q Consensus 83 ~~~~~~~~~d~~E~~~~~~-~~~~~~~~n~wP~~~~~~~f~~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~~--- 158 (211)
. ....||+|.|.+.. |.. ..+|.||+ .+++||+++++|+++|++|+.+||++|+++|||++++|.+..
T Consensus 132 ~----~~~~~w~e~~~~~~~p~~--~~~~~wP~--~~~~fr~~~~~Y~~~~~~L~~~ll~~la~~Lgl~~~~~~~~~~~~ 203 (358)
T PLN02254 132 F----FNKKMWSEGFTIMGSPLE--HARQLWPQ--DHTKFCDVMEEYQKEMKKLAERLMWLMLGSLGITEEDIKWAGPKS 203 (358)
T ss_pred c----cCCCCceeeEEeecCccc--cchhhCCC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcc
Confidence 1 23578999999853 321 14689997 578999999999999999999999999999999999887422
Q ss_pred ccCCCcccceeccCCCCCCCCCCCccccccccccCcceeEecCCCCCceeec
Q 028254 159 ALDAPMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDGVPGLQACL 210 (211)
Q Consensus 159 ~~~~~~~~lr~~~Yp~~~~~~~~~~~~~~~HtD~g~lTiL~qd~~~GLQV~~ 210 (211)
....+.+.+|+||||||+. ++..+|+++|||+|+||||+||+++||||++
T Consensus 204 ~~~~~~~~lRl~~YPp~p~--~~~~~G~~~HtD~g~lTiL~Qd~v~GLQV~~ 253 (358)
T PLN02254 204 GSQGAQAALQLNSYPVCPD--PDRAMGLAPHTDSSLLTILYQSNTSGLQVFR 253 (358)
T ss_pred cccCcceeEEEecCCCCCC--cccccCcCCccCCCcEEEEecCCCCCceEEC
Confidence 1244567899999999986 4568999999999999999999999999975
No 6
>PLN02485 oxidoreductase
Probab=100.00 E-value=3.2e-50 Score=333.47 Aligned_cols=203 Identities=30% Similarity=0.521 Sum_probs=167.8
Q ss_pred CCC-CCCCCeEeCCCc-------------chHHHHHHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhh
Q 028254 1 MTE-ALQLPVIDLSSP-------------DRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMK 66 (211)
Q Consensus 1 m~~-~~~iP~IDl~~~-------------~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~ 66 (211)
||. ...||||||+.. ++.+++++|.+||++||||||+||||+.++++++++++++||+||.|+|++
T Consensus 1 ~~~~~~~iPvIDl~~l~~~~~~~~~~~~~~~~~~~~~l~~Ac~~~GFf~l~nHGi~~~l~~~~~~~~~~FF~lP~e~K~~ 80 (329)
T PLN02485 1 MATDFKSIPVIDISPLVAKCDDPDMAEDPDVAEVVRQLDKACRDAGFFYVKGHGISDSLIKKVREVTHEFFELPYEEKLK 80 (329)
T ss_pred CCCCCCCCCeEechhhhccCcccccccchHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHHh
Confidence 663 568999999732 124568999999999999999999999999999999999999999999999
Q ss_pred hcccC---CcccccccccccCCCCCCCCCcccccccCCC---CC------CCCCCCCCCCCCCchhHHHHHHHHHHHHHH
Q 028254 67 LARKE---HRGYTALCDEILDPSSTSEGDPKESFYIGPL---EG------TLSSMNQWPSLEILPTWRSTMEYYHQKVLS 134 (211)
Q Consensus 67 ~~~~~---~~Gy~~~~~e~~~~~~~~~~d~~E~~~~~~~---~~------~~~~~n~wP~~~~~~~f~~~~~~y~~~~~~ 134 (211)
+.... ++||.+.+.+.. .+..|++|.|.++.. .. ....+|.||+ .+|+|++.+++|++.|.+
T Consensus 81 ~~~~~~~~~rGY~~~g~~~~----~~~~d~~E~~~~~~~~~~~~~~~~~~~~~~~n~wP~--~~~~fr~~~~~y~~~~~~ 154 (329)
T PLN02485 81 IKMTPAAGYRGYQRIGENVT----KGKPDMHEAIDCYREFKPGKYGDLGKVMEGPNQWPE--NPQEFKALMEEYIKLCTD 154 (329)
T ss_pred hcccCCCCCCCccccccccc----CCCCCcchhhhhcccCCCCcccccccccCCCCCCCC--ccHHHHHHHHHHHHHHHH
Confidence 86532 789998875542 235799999988631 10 0125899997 578999999999999999
Q ss_pred HHHHHHHHHHHHcCCChhhhhcccccCCCcccceeccCCCCCCCC--CCCccccccccccCcceeEecC-CCCCceeec
Q 028254 135 AGRRLIHLIALALNLNEDFFEKVGALDAPMAFLRLLHYPGELVSS--NQEVCGASAHSDYGMITLLATD-GVPGLQACL 210 (211)
Q Consensus 135 l~~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~lr~~~Yp~~~~~~--~~~~~~~~~HtD~g~lTiL~qd-~~~GLQV~~ 210 (211)
++.+|++++|++||+++++|.+ ...+.+.+.+|++||||++... ++..+|+++|||+|+||||+|| +++||||+.
T Consensus 155 l~~~ll~~~a~~Lgl~~~~f~~-~~~~~~~~~lrl~~YP~~~~~~~~~~~~~g~~~HTD~g~lTlL~qd~~~~GLqV~~ 232 (329)
T PLN02485 155 LSRKILRGIALALGGSPDEFEG-KMAGDPFWVMRIIGYPGVSNLNGPPENDIGCGAHTDYGLLTLVNQDDDITALQVRN 232 (329)
T ss_pred HHHHHHHHHHHHcCCChHHhhh-hhccCccceEEEEeCCCCccccCCcccCcccccccCCCeEEEEeccCCCCeeeEEc
Confidence 9999999999999999998875 2334566789999999987521 3457899999999999999997 589999974
No 7
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=100.00 E-value=3.6e-50 Score=335.12 Aligned_cols=195 Identities=28% Similarity=0.437 Sum_probs=163.7
Q ss_pred CCCCeEeCCCc-----chHHHHHHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhhcccC--Cccccc
Q 028254 5 LQLPVIDLSSP-----DRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKE--HRGYTA 77 (211)
Q Consensus 5 ~~iP~IDl~~~-----~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~--~~Gy~~ 77 (211)
.+|||||++.. ++.+.+++|.+||++||||||+||||+.++++++++++++||+||.|+|+++.... .+||..
T Consensus 36 ~~iPvIDls~~~~~~~~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~Gy~~ 115 (358)
T PLN02515 36 DEIPVISLAGIDEVGGRRGEICRKIVEACEDWGIFQVVDHGVDANLVADMTRLARDFFALPAEEKLRFDMSGGKKGGFIV 115 (358)
T ss_pred CCCCEEEChhccCCchHHHHHHHHHHHHHHHCcEEEEEcCCCCHHHHHHHHHHHHHHhcCCHHHHhhhCcCCCCccCccc
Confidence 46999999843 24567899999999999999999999999999999999999999999999986543 679963
Q ss_pred ccccccCCCCCCCCCcccccccC-CCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhc
Q 028254 78 LCDEILDPSSTSEGDPKESFYIG-PLEGTLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFFEK 156 (211)
Q Consensus 78 ~~~e~~~~~~~~~~d~~E~~~~~-~~~~~~~~~n~wP~~~~~~~f~~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~ 156 (211)
. +... .....||+|.|.+. .+... ...|.||+ .+|+||+++++|+++|.+|+..||++++++||+++++|.+
T Consensus 116 ~--~~~~--~~~~~d~kE~~~~~~~~~~~-~~~n~WP~--~~~~fr~~~~~y~~~~~~L~~~ll~~la~~Lgl~~~~f~~ 188 (358)
T PLN02515 116 S--SHLQ--GEAVQDWREIVTYFSYPVRT-RDYSRWPD--KPEGWRAVTEEYSEKLMGLACKLLEVLSEAMGLEKEALTK 188 (358)
T ss_pred c--cccc--cccccCceeeeccccCcccc-cccccccc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHH
Confidence 2 2211 12357999999764 23211 24689997 5789999999999999999999999999999999999985
Q ss_pred ccccCCCcccceeccCCCCCCCCCCCccccccccccCcceeEecCCCCCceeec
Q 028254 157 VGALDAPMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDGVPGLQACL 210 (211)
Q Consensus 157 ~~~~~~~~~~lr~~~Yp~~~~~~~~~~~~~~~HtD~g~lTiL~qd~~~GLQV~~ 210 (211)
.+....+.+|++|||+|+. ++..+|+++|||+|+||||+||+++||||++
T Consensus 189 --~~~~~~~~lrl~~YP~~~~--~~~~~G~~~HTD~g~lTlL~Qd~v~GLQV~~ 238 (358)
T PLN02515 189 --ACVDMDQKVVVNYYPKCPQ--PDLTLGLKRHTDPGTITLLLQDQVGGLQATR 238 (358)
T ss_pred --hhcCccceEEEeecCCCCC--hhhccCCCCCCCCCeEEEEecCCCCceEEEE
Confidence 5555667899999999875 4568899999999999999999999999974
No 8
>PLN02216 protein SRG1
Probab=100.00 E-value=2.8e-50 Score=336.16 Aligned_cols=196 Identities=28% Similarity=0.418 Sum_probs=164.0
Q ss_pred CCCCeEeCCCc---c-hHHHHHHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhhcccC--Ccccccc
Q 028254 5 LQLPVIDLSSP---D-RLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKE--HRGYTAL 78 (211)
Q Consensus 5 ~~iP~IDl~~~---~-~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~--~~Gy~~~ 78 (211)
.+||+|||+.. + +.+++++|.+||++||||||+||||+.++++++++++++||+||.|+|+++.... .+||...
T Consensus 51 ~~iPvIDls~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~Gy~~~ 130 (357)
T PLN02216 51 SEIPIIDMKRLCSSTAMDSEVEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKLWQRPGEIEGFGQA 130 (357)
T ss_pred CCCCeEEChhccCCccHHHHHHHHHHHHHHCcEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHHhhhcCCCCccccCcc
Confidence 47999999843 2 2457899999999999999999999999999999999999999999999987543 7788654
Q ss_pred cccccCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhccc
Q 028254 79 CDEILDPSSTSEGDPKESFYIGPLEGTLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFFEKVG 158 (211)
Q Consensus 79 ~~e~~~~~~~~~~d~~E~~~~~~~~~~~~~~n~wP~~~~~~~f~~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~~ 158 (211)
.... ..+..||+|.|.++........+|.||. .+++||+++++|+++|.+|+.+||++||++|||++++|.+
T Consensus 131 ~~~~----~~~~~d~~e~~~~~~~p~~~~~~~~WP~--~p~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~-- 202 (357)
T PLN02216 131 FVVS----EDQKLDWADMFFLTMQPVRLRKPHLFPK--LPLPFRDTLETYSAEVKSIAKILFAKMASALEIKPEEMEK-- 202 (357)
T ss_pred cccc----ccccCCceeeeeeeccCcccccchhccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH--
Confidence 3211 1235799999987632111236789997 5789999999999999999999999999999999999985
Q ss_pred ccCC-CcccceeccCCCCCCCCCCCccccccccccCcceeEec-CCCCCceeec
Q 028254 159 ALDA-PMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLAT-DGVPGLQACL 210 (211)
Q Consensus 159 ~~~~-~~~~lr~~~Yp~~~~~~~~~~~~~~~HtD~g~lTiL~q-d~~~GLQV~~ 210 (211)
.+.. ..+.||+||||||+. ++..+|+++|||+|+||||+| ++++||||++
T Consensus 203 ~~~~~~~~~lRl~~YPp~p~--~~~~~G~~~HtD~g~lTlL~q~~~v~GLQV~~ 254 (357)
T PLN02216 203 LFDDDLGQSIRMNYYPPCPQ--PDQVIGLTPHSDAVGLTILLQVNEVEGLQIKK 254 (357)
T ss_pred HhccCchheeEEeecCCCCC--cccccCccCcccCceEEEEEecCCCCceeEEE
Confidence 4544 456899999999986 456899999999999999999 5799999975
No 9
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=3.3e-50 Score=336.11 Aligned_cols=197 Identities=30% Similarity=0.460 Sum_probs=165.5
Q ss_pred CCCCCeEeCCCc---c---hHHHHHHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhhcccC--Cccc
Q 028254 4 ALQLPVIDLSSP---D---RLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKE--HRGY 75 (211)
Q Consensus 4 ~~~iP~IDl~~~---~---~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~--~~Gy 75 (211)
..+||||||+.. + +.+.+++|.+||++||||||+||||+.++++++++++++||+||.|+|+++.... .+||
T Consensus 50 ~~~IPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGi~~~l~~~~~~~~~~FF~LP~eeK~k~~~~~~~~~GY 129 (361)
T PLN02758 50 PDDIPVIDFSRLVKGDNDELFSEILKLRLACEEWGFFQVINHGIELELLEEIEKVAREFFMLPLEEKQKYPMAPGTVQGY 129 (361)
T ss_pred CCCCCeEEchhhcCCChHHHHHHHHHHHHHHHhCeEEEEecCCCCHHHHHHHHHHHHHHhcCCHHHHHHhcccCCCcccc
Confidence 457999999842 2 2345889999999999999999999999999999999999999999999987643 7899
Q ss_pred ccccccccCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhh
Q 028254 76 TALCDEILDPSSTSEGDPKESFYIGPLEGTLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFFE 155 (211)
Q Consensus 76 ~~~~~e~~~~~~~~~~d~~E~~~~~~~~~~~~~~n~wP~~~~~~~f~~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~ 155 (211)
....... .....||+|.|.++........+|.||+ .++.||+.+++|+++|.+|+..|+++|+++||+++++|.
T Consensus 130 ~~~~~~~----~~~~~d~~e~~~~~~~p~~~~~~~~WP~--~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~ 203 (361)
T PLN02758 130 GQAFVFS----EDQKLDWCNMFALGVEPHFIRNPKLWPT--KPARFSETLEVYSREIRELCQRLLKYIAMTLGLKEDRFE 203 (361)
T ss_pred Ccccccc----cccccCeeEEEEeeccCccccccccCcc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhH
Confidence 7543221 1235799999988732211125799997 478999999999999999999999999999999999998
Q ss_pred cccccCCCcccceeccCCCCCCCCCCCccccccccccCcceeEecCC--CCCceeec
Q 028254 156 KVGALDAPMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDG--VPGLQACL 210 (211)
Q Consensus 156 ~~~~~~~~~~~lr~~~Yp~~~~~~~~~~~~~~~HtD~g~lTiL~qd~--~~GLQV~~ 210 (211)
+ .+..+.+.||+||||+|+. ++..+|+++|||+|+||||+||+ ++||||++
T Consensus 204 ~--~~~~~~~~lR~~~YP~~~~--~~~~~g~~~HtD~g~lTlL~qd~~~v~GLQV~~ 256 (361)
T PLN02758 204 E--MFGEAVQAVRMNYYPPCSR--PDLVLGLSPHSDGSALTVLQQGKGSCVGLQILK 256 (361)
T ss_pred H--HhcCccceeeeecCCCCCC--cccccCccCccCCceeEEEEeCCCCCCCeeeee
Confidence 5 5666778999999999976 45688999999999999999974 89999975
No 10
>PLN02276 gibberellin 20-oxidase
Probab=100.00 E-value=3.5e-50 Score=336.21 Aligned_cols=196 Identities=26% Similarity=0.423 Sum_probs=166.2
Q ss_pred CCCCeEeCCCc---c---hHHHHHHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhhcccC--Ccccc
Q 028254 5 LQLPVIDLSSP---D---RLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKE--HRGYT 76 (211)
Q Consensus 5 ~~iP~IDl~~~---~---~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~--~~Gy~ 76 (211)
.+||||||+.. + +.+++++|.+||++||||||+||||+.++++++++++++||+||.|+|+++.... ++||.
T Consensus 39 ~~iPvIDls~~~~~~~~~~~~~~~~l~~Ac~~~GFF~l~nHGI~~~l~~~~~~~~~~FF~LP~eeK~k~~~~~~~~~GY~ 118 (361)
T PLN02276 39 LAVPLIDLGGFLSGDEAATAEAARLVREACLKHGFFQVVNHGVDAALIRAAHEYMDAFFKLPLSEKQRAQRKPGESCGYA 118 (361)
T ss_pred CCCCeEEChhhcCCChHHHHHHHHHHHHHHHHCcEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccCCCCccccC
Confidence 57999999842 1 3457899999999999999999999999999999999999999999999986543 78998
Q ss_pred cccccccCCCCCCCCCcccccccCC-CCCC------CCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 028254 77 ALCDEILDPSSTSEGDPKESFYIGP-LEGT------LSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNL 149 (211)
Q Consensus 77 ~~~~e~~~~~~~~~~d~~E~~~~~~-~~~~------~~~~n~wP~~~~~~~f~~~~~~y~~~~~~l~~~ll~~la~~Lgl 149 (211)
+.+.+... +..||+|.|.++. +... ...+|.||. ..++|++.+++|+..|.+++..||++||++|||
T Consensus 119 ~~~~~~~~----~~~d~~E~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl 192 (361)
T PLN02276 119 SSHTGRFS----SKLPWKETLSFGYHADGGSSPVVVDYFKSVLGE--DFEQFGKVYQEYCEAMKTLSLKIMELLGISLGV 192 (361)
T ss_pred ccCccccC----CCCCeeeeEEEeccCcccccccchhcccccCCc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 87655432 2469999999973 2111 113467885 467899999999999999999999999999999
Q ss_pred ChhhhhcccccCCCcccceeccCCCCCCCCCCCccccccccccCcceeEecCCCCCceeec
Q 028254 150 NEDFFEKVGALDAPMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDGVPGLQACL 210 (211)
Q Consensus 150 ~~~~~~~~~~~~~~~~~lr~~~Yp~~~~~~~~~~~~~~~HtD~g~lTiL~qd~~~GLQV~~ 210 (211)
++++|.+ .+..+.+.+|++|||+|+. ++..+|+++|||+|+||||+||+++||||++
T Consensus 193 ~~~~f~~--~~~~~~~~lrl~~YP~~~~--~~~~~g~~~HTD~g~lTlL~Qd~v~GLQV~~ 249 (361)
T PLN02276 193 DRGYYRK--FFEDGDSIMRCNYYPPCQE--PELTLGTGPHCDPTSLTILHQDQVGGLQVFV 249 (361)
T ss_pred CHHHHHH--HhcCccceeeeEeCCCCCC--cccccCCccccCCceeEEEEecCCCceEEEE
Confidence 9999986 5666778999999999976 4567899999999999999999999999975
No 11
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=1.2e-49 Score=331.54 Aligned_cols=194 Identities=34% Similarity=0.493 Sum_probs=163.9
Q ss_pred CCCCCeEeCCCc---chHHHHHHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhhcccC--Ccccccc
Q 028254 4 ALQLPVIDLSSP---DRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKE--HRGYTAL 78 (211)
Q Consensus 4 ~~~iP~IDl~~~---~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~--~~Gy~~~ 78 (211)
..+||+|||+.. ++.+++++|.+||++||||||+||||+.++++++++++++||+||.|+|+++.... .+||.+.
T Consensus 24 ~~~iPvIDls~~~~~~~~~~~~~l~~Ac~~~GFf~v~nHGi~~~l~~~~~~~~~~FF~LP~eeK~~~~~~~~~~~GY~~~ 103 (345)
T PLN02750 24 DEEIPVIDLSVSTSHDKTEVASKIGEACKKWGFFQVINHGVPSELRQRVEKVAKEFFDQTTEEKRKVKRDEVNPMGYHDS 103 (345)
T ss_pred CCCCCeEECCCCCcccHHHHHHHHHHHHHhCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccCCCCccCcCcc
Confidence 357999999853 34567899999999999999999999999999999999999999999999986543 5799642
Q ss_pred cccccCCCCCCCCCcccccccCC--CC----CCC-------CCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028254 79 CDEILDPSSTSEGDPKESFYIGP--LE----GTL-------SSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIAL 145 (211)
Q Consensus 79 ~~e~~~~~~~~~~d~~E~~~~~~--~~----~~~-------~~~n~wP~~~~~~~f~~~~~~y~~~~~~l~~~ll~~la~ 145 (211)
. . ..+..|++|.|.++. +. ... ..+|.||+ .+++||+++++|++.|.+|+.+|+++||+
T Consensus 104 ~--~----~~~~~d~kE~~~~~~~~~~~~p~~~~~~~~~~~~~~n~wP~--~~~~fr~~~~~y~~~~~~l~~~ll~~la~ 175 (345)
T PLN02750 104 E--H----TKNIRDWKEVFDFLVQDPTLVPASPDPEDTELRKLTNQWPQ--NPSHFRELCQEYARQVEKLAFKLLELISL 175 (345)
T ss_pred c--c----cccCCCceeEEEEeecccccccccccccccccccccccCCC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1 123569999998862 10 000 12689997 47899999999999999999999999999
Q ss_pred HcCCChhhhhcccccCCCcccceeccCCCCCCCCCCCccccccccccCcceeEecCCCCCceee
Q 028254 146 ALNLNEDFFEKVGALDAPMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDGVPGLQAC 209 (211)
Q Consensus 146 ~Lgl~~~~~~~~~~~~~~~~~lr~~~Yp~~~~~~~~~~~~~~~HtD~g~lTiL~qd~~~GLQV~ 209 (211)
+||+++++|.+ .+..+.+.+|++||||++. ++..+|+++|||+|+||||+||+++||||+
T Consensus 176 ~Lgl~~~~f~~--~~~~~~~~lR~~~YPp~~~--~~~~~g~~~HtD~g~lTlL~qd~v~GLQV~ 235 (345)
T PLN02750 176 SLGLPADRLNG--YFKDQISFARFNHYPPCPA--PHLALGVGRHKDGGALTVLAQDDVGGLQIS 235 (345)
T ss_pred HcCCCHHHHHH--HhcCcceEEEEEecCCCCC--cccccCcCCCCCCCeEEEEecCCCCceEEe
Confidence 99999999986 5666778999999999875 456789999999999999999999999996
No 12
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase
Probab=100.00 E-value=2.3e-49 Score=326.31 Aligned_cols=195 Identities=28% Similarity=0.474 Sum_probs=163.9
Q ss_pred CCCCCCCCeEeCCCc---chHHHHHHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhhcccCCccccc
Q 028254 1 MTEALQLPVIDLSSP---DRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKEHRGYTA 77 (211)
Q Consensus 1 m~~~~~iP~IDl~~~---~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~Gy~~ 77 (211)
|+.+.+||+|||+.. ++.+++++|++||++||||||+|||||.++++++++++++||+||.|+|+++... .+||.+
T Consensus 1 ~~~~~~iPvIDls~~~~~~~~~~~~~l~~A~~~~GFF~v~nHGI~~~l~~~~~~~~~~fF~LP~e~K~~~~~~-~~gy~~ 79 (321)
T PLN02299 1 MAKMESFPVIDMEKLNGEERAATMELIKDACENWGFFELVNHGISHELMDEVEKMTKEHYKKCMEQRFKEMVA-SKGLEG 79 (321)
T ss_pred CCCCCCCCEEECcCCCcccHHHHHHHHHHHHHhcCEEEEECCCCCHHHHHHHHHHHHHHhCCCHHHHHhcccC-CCCccc
Confidence 788889999999843 3456789999999999999999999999999999999999999999999997532 578876
Q ss_pred ccccccCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhcc
Q 028254 78 LCDEILDPSSTSEGDPKESFYIGPLEGTLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFFEKV 157 (211)
Q Consensus 78 ~~~e~~~~~~~~~~d~~E~~~~~~~~~~~~~~n~wP~~~~~~~f~~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~ 157 (211)
.+.+. ...||+|.|.++.... ...+.||+ .+++||+.+.+|++.|.+++.+|+++|+++||+++++|.+
T Consensus 80 ~~~~~------~~~d~ke~~~~~~~~~--~~~~~wP~--~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~- 148 (321)
T PLN02299 80 VQTEV------EDLDWESTFFLRHLPE--SNLADIPD--LDDEYRKVMKDFALELEKLAEELLDLLCENLGLEKGYLKK- 148 (321)
T ss_pred ccccC------CCcCHHHHcccccCCc--cccccCcc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH-
Confidence 54321 2468999998862111 14578997 5789999999999999999999999999999999999985
Q ss_pred cccC---CCcccceeccCCCCCCCCCCCccccccccccCcceeEecC-CCCCceeec
Q 028254 158 GALD---APMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATD-GVPGLQACL 210 (211)
Q Consensus 158 ~~~~---~~~~~lr~~~Yp~~~~~~~~~~~~~~~HtD~g~lTiL~qd-~~~GLQV~~ 210 (211)
.+. .+...+|++|||||+. ++..+|+++|||+|+||||+|| +++||||++
T Consensus 149 -~~~~~~~~~~~lRl~~YPp~~~--~~~~~G~~~HTD~g~lTlL~qd~~v~GLQV~~ 202 (321)
T PLN02299 149 -AFHGSKGPTFGTKVSNYPPCPK--PDLVKGLRAHTDAGGIILLFQDDKVSGLQLLK 202 (321)
T ss_pred -HhcCCCCccceeeeEecCCCCC--cccccCccCccCCCeEEEEEecCCCCCcCccc
Confidence 332 2455799999999986 3456899999999999999997 599999975
No 13
>PLN02704 flavonol synthase
Probab=100.00 E-value=2e-49 Score=328.96 Aligned_cols=196 Identities=28% Similarity=0.430 Sum_probs=162.8
Q ss_pred CCCCCeEeCCCcchHHHHHHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhhcccC----Cccccccc
Q 028254 4 ALQLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKE----HRGYTALC 79 (211)
Q Consensus 4 ~~~iP~IDl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~----~~Gy~~~~ 79 (211)
..+||||||+.+++.+.+++|.+||++||||||+||||+.++++++++.+++||+||.|+|+++.... ++||....
T Consensus 40 ~~~iPvIDls~~~~~~~~~~l~~Ac~~~GFf~l~nHGI~~~l~~~~~~~~~~FF~LP~e~K~~~~~~~~~~~~~Gy~~~~ 119 (335)
T PLN02704 40 DPQVPTIDLSDPDEEKLTRLIAEASKEWGMFQIVNHGIPSEVISKLQKVGKEFFELPQEEKEVYAKPPDSKSIEGYGTKL 119 (335)
T ss_pred CCCCCeEECCCccHHHHHHHHHHHHHHcCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHHhhccCCCcccccccccc
Confidence 45799999998776778999999999999999999999999999999999999999999999987532 68997554
Q ss_pred ccccCCCCCCCCCcccccccC-CCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhccc
Q 028254 80 DEILDPSSTSEGDPKESFYIG-PLEGTLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFFEKVG 158 (211)
Q Consensus 80 ~e~~~~~~~~~~d~~E~~~~~-~~~~~~~~~n~wP~~~~~~~f~~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~~ 158 (211)
.+.. ....+++|.+... .+.. ....|.||. .+|+||+.+.+|++.|.+|+.+|+++|+++||+++++|.+
T Consensus 120 ~~~~----~~~~~~~d~~~~~~~p~~-~~~~n~wP~--~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~-- 190 (335)
T PLN02704 120 QKEP----EGKKAWVDHLFHRIWPPS-AINYQFWPK--NPPSYREVNEEYAKYLRGVADKLFKTLSLGLGLEEDELKE-- 190 (335)
T ss_pred cccc----cCcccceeeeEeeecCCc-ccchhhCcc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH--
Confidence 3321 2345677776542 1211 124689997 4789999999999999999999999999999999999985
Q ss_pred ccCC--CcccceeccCCCCCCCCCCCccccccccccCcceeEecCCCCCceeec
Q 028254 159 ALDA--PMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDGVPGLQACL 210 (211)
Q Consensus 159 ~~~~--~~~~lr~~~Yp~~~~~~~~~~~~~~~HtD~g~lTiL~qd~~~GLQV~~ 210 (211)
.+.. ..+.+|++|||||+. ++..+|+++|||+|+||||+||+++||||++
T Consensus 191 ~~~~~~~~~~lrl~~YP~~~~--~~~~~g~~~HtD~g~lTlL~qd~v~GLQV~~ 242 (335)
T PLN02704 191 AVGGEELEYLLKINYYPPCPR--PDLALGVVAHTDMSAITILVPNEVQGLQVFR 242 (335)
T ss_pred HhcCCchhhhhhhhcCCCCCC--cccccCccCccCCcceEEEecCCCCceeEeE
Confidence 3332 345899999999875 4567999999999999999999999999974
No 14
>PLN03178 leucoanthocyanidin dioxygenase; Provisional
Probab=100.00 E-value=2.3e-49 Score=331.32 Aligned_cols=196 Identities=26% Similarity=0.448 Sum_probs=163.2
Q ss_pred CCCCCeEeCCCc------chHHHHHHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhhcccC----Cc
Q 028254 4 ALQLPVIDLSSP------DRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKE----HR 73 (211)
Q Consensus 4 ~~~iP~IDl~~~------~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~----~~ 73 (211)
...||||||+.. ++.+++++|.+||++||||||+||||+.++++++++++++||+||.|+|+++.... ++
T Consensus 45 ~~~iPvIDls~~~~~~~~~~~~~~~~l~~Ac~~~GFF~l~nHGI~~~l~~~~~~~~~~FF~LP~e~K~~~~~~~~~~~~~ 124 (360)
T PLN03178 45 GPQVPVVDLSNIESDDEVVREACVEAVRAAAAEWGVMHLVGHGIPADLLDRVRKAGEAFFRLPIEEKEKYANDQARGAAQ 124 (360)
T ss_pred CCCCCEEEchhhcCCChhhHHHHHHHHHHHHHHCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHHhhccCCCCCcc
Confidence 347999999843 14567899999999999999999999999999999999999999999999987532 67
Q ss_pred ccccccccccCCCCCCCCCcccccccC-CCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChh
Q 028254 74 GYTALCDEILDPSSTSEGDPKESFYIG-PLEGTLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNED 152 (211)
Q Consensus 74 Gy~~~~~e~~~~~~~~~~d~~E~~~~~-~~~~~~~~~n~wP~~~~~~~f~~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~ 152 (211)
||.....+. ..+..||+|.|... .|.. ...+|.||+ .+|+||+.+++|+++|.+++..||++||++|||+++
T Consensus 125 Gy~~~~~~~----~~~~~d~~e~~~~~~~p~~-~~~~n~wP~--~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~ 197 (360)
T PLN03178 125 GYGSKLAAN----ASGQLEWEDYFFHLTLPED-KRDPSLWPK--TPPDYVPATSEYSRSLRSLATKLLAILSLGLGLPED 197 (360)
T ss_pred ccccccccc----cccccchhHhhccccCCcc-ccccccCCC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 996543322 12356888887653 2222 225789997 588999999999999999999999999999999999
Q ss_pred hhhcccccC---CCcccceeccCCCCCCCCCCCccccccccccCcceeEecCCCCCceeec
Q 028254 153 FFEKVGALD---APMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDGVPGLQACL 210 (211)
Q Consensus 153 ~~~~~~~~~---~~~~~lr~~~Yp~~~~~~~~~~~~~~~HtD~g~lTiL~qd~~~GLQV~~ 210 (211)
+|.+ .+. ...+.+|++|||+|+. ++..+|+++|||+|+||||+||+++||||++
T Consensus 198 ~f~~--~~~~~~~~~~~lrl~~YP~~~~--~~~~~g~~~HTD~g~lTlL~qd~v~GLQV~~ 254 (360)
T PLN03178 198 RLEK--EVGGLEELLLQMKINYYPRCPQ--PDLALGVEAHTDVSALTFILHNMVPGLQVLY 254 (360)
T ss_pred HHHH--HhcCcccchhhhheeccCCCCC--CccccCcCCccCCCceEEEeeCCCCceeEeE
Confidence 9986 343 3456899999999876 4568999999999999999999999999975
No 15
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=3.6e-49 Score=328.44 Aligned_cols=195 Identities=26% Similarity=0.384 Sum_probs=161.1
Q ss_pred CCCCCeEeCCCc---chHHHHHHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhhcc-cC---Ccccc
Q 028254 4 ALQLPVIDLSSP---DRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLAR-KE---HRGYT 76 (211)
Q Consensus 4 ~~~iP~IDl~~~---~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~-~~---~~Gy~ 76 (211)
..+||+||++.. ++.+++++|.+||++||||||+||||+.++++++++++++||+||.|+|+++.. .. .+||.
T Consensus 39 ~~~iPvIDls~~~~~~~~~~~~~l~~A~~~~GFf~v~nHGI~~~l~~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~~~~~ 118 (348)
T PLN02912 39 GDSIPLIDLRDLHGPNRADIINQFAHACSSYGFFQIKNHGVPEETIKKMMNVAREFFHQSESERVKHYSADTKKTTRLST 118 (348)
T ss_pred CCCCCeEECcccCCcCHHHHHHHHHHHHHHCCEEEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHHhHhhcCCCCcccccc
Confidence 357999999853 345678999999999999999999999999999999999999999999999543 21 34444
Q ss_pred cccccccCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhc
Q 028254 77 ALCDEILDPSSTSEGDPKESFYIGPLEGTLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFFEK 156 (211)
Q Consensus 77 ~~~~e~~~~~~~~~~d~~E~~~~~~~~~~~~~~n~wP~~~~~~~f~~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~ 156 (211)
.... ......||+|.+.+...... ..+|.||. .+++||+++.+|+++|.+|+.+|+++||++|||++++|.+
T Consensus 119 ~~~~-----~~~~~~~~~e~~~~~~~~~~-~~~n~wP~--~~~~fr~~~~~y~~~~~~l~~~il~~la~~Lgl~~~~f~~ 190 (348)
T PLN02912 119 SFNV-----SKEKVSNWRDFLRLHCYPIE-DFIEEWPS--TPISFREVTAEYATSVRALVLTLLEAISESLGLEKDRVSN 190 (348)
T ss_pred cccc-----cccccCCchheEEEeecCcc-cccccCcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 3321 11235689999887521111 14689997 5789999999999999999999999999999999999985
Q ss_pred ccccCCCcccceeccCCCCCCCCCCCccccccccccCcceeEecCCCCCceeec
Q 028254 157 VGALDAPMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDGVPGLQACL 210 (211)
Q Consensus 157 ~~~~~~~~~~lr~~~Yp~~~~~~~~~~~~~~~HtD~g~lTiL~qd~~~GLQV~~ 210 (211)
.+....+.||++|||||+. ++..+|+++|||+|+||||+||+++||||++
T Consensus 191 --~~~~~~~~lrl~~YPp~~~--~~~~~G~~~HtD~g~lTlL~Qd~v~GLQV~~ 240 (348)
T PLN02912 191 --TLGKHGQHMAINYYPPCPQ--PELTYGLPGHKDANLITVLLQDEVSGLQVFK 240 (348)
T ss_pred --HhcCccceeeeeecCCCCC--hhhcCCcCCCcCCCceEEEEECCCCceEEEE
Confidence 5566678999999999975 4457899999999999999999999999974
No 16
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=6.3e-49 Score=326.97 Aligned_cols=197 Identities=27% Similarity=0.399 Sum_probs=161.2
Q ss_pred CCCCCeEeCCCc-----chHHHHHHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhhcccC--Ccccc
Q 028254 4 ALQLPVIDLSSP-----DRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKE--HRGYT 76 (211)
Q Consensus 4 ~~~iP~IDl~~~-----~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~--~~Gy~ 76 (211)
..+||||||+.. ++...+++|++||++||||||+||||+.++++++++.+++||+||.|+|+++.... ++||.
T Consensus 42 ~~~IPvIDls~~~~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI~~~l~~~~~~~~~~FF~LP~eeK~~~~~~~~~~~GY~ 121 (348)
T PLN00417 42 EMDIPAIDLSLLLSSSDDGREELSKLHSALSTWGVVQVMNHGITEAFLDKIYKLTKQFFALPTEEKQKCAREIGSIQGYG 121 (348)
T ss_pred CCCCCeEEChhhcCCCchHHHHHHHHHHHHHHCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHHhhcCCCCccccc
Confidence 347999999832 23345789999999999999999999999999999999999999999999997643 78996
Q ss_pred cccccccCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhc
Q 028254 77 ALCDEILDPSSTSEGDPKESFYIGPLEGTLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFFEK 156 (211)
Q Consensus 77 ~~~~e~~~~~~~~~~d~~E~~~~~~~~~~~~~~n~wP~~~~~~~f~~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~ 156 (211)
+... . ......|++|.++++........+|.||. .+++||+.+++|+.+|.+|+.+||++||++|||++++|.+
T Consensus 122 ~~~~--~--~~~~~~d~~e~~~~~~~p~~~~~~n~wP~--~~~~fr~~~~~y~~~~~~l~~~ll~~la~~LGl~~~~f~~ 195 (348)
T PLN00417 122 NDMI--L--SDDQVLDWIDRLYLTTYPEDQRQLKFWPQ--VPVGFRETLHEYTMKQRLVIEKFFKAMARSLELEENCFLE 195 (348)
T ss_pred cccc--c--ccCCCcCccceeecccCCccccccccccc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 5211 1 11235689998877521111225689997 5789999999999999999999999999999999999986
Q ss_pred ccccCC-CcccceeccCCCCCCCCCCCccccccccccCcceeEecC-CCCCceeec
Q 028254 157 VGALDA-PMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATD-GVPGLQACL 210 (211)
Q Consensus 157 ~~~~~~-~~~~lr~~~Yp~~~~~~~~~~~~~~~HtD~g~lTiL~qd-~~~GLQV~~ 210 (211)
.+.. ..+.+|++|||||+. ++.++|+++|||+|+||||+|| +++||||++
T Consensus 196 --~~~~~~~~~lRl~~YPp~~~--~~~~~g~~~HTD~g~lTlL~qd~~v~GLQV~~ 247 (348)
T PLN00417 196 --MYGENATMDTRFNMYPPCPR--PDKVIGVKPHADGSAFTLLLPDKDVEGLQFLK 247 (348)
T ss_pred --HhccCccceeeeeecCCCCC--cccccCCcCccCCCceEEEEecCCCCceeEeE
Confidence 3433 345799999999976 3567899999999999999997 699999975
No 17
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=8.2e-49 Score=325.60 Aligned_cols=193 Identities=31% Similarity=0.498 Sum_probs=161.9
Q ss_pred CCCCeEeCCCcchHHHHHHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhhcccC----Ccccccccc
Q 028254 5 LQLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKE----HRGYTALCD 80 (211)
Q Consensus 5 ~~iP~IDl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~----~~Gy~~~~~ 80 (211)
.+|||||++..++.+++++|.+||++||||||+||||+.++++++++.+++||+||.|+|+++.... .++|...+.
T Consensus 36 ~~iPvIDls~~~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~l~~~~~~~~~~fF~LP~e~K~~~~~~~~~~~~~~~~~~~~ 115 (337)
T PLN02639 36 ENVPVIDLGSPDRAQVVQQIGDACRRYGFFQVINHGVSAELVEKMLAVAHEFFRLPVEEKMKLYSDDPTKTMRLSTSFNV 115 (337)
T ss_pred CCCCeEECCCccHHHHHHHHHHHHHhCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCHHHHhhhhccCCCCcccccccccc
Confidence 5799999997777778999999999999999999999999999999999999999999999975432 233333221
Q ss_pred cccCCCCCCCCCcccccccCC-CCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhcccc
Q 028254 81 EILDPSSTSEGDPKESFYIGP-LEGTLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFFEKVGA 159 (211)
Q Consensus 81 e~~~~~~~~~~d~~E~~~~~~-~~~~~~~~n~wP~~~~~~~f~~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~~~ 159 (211)
......+|+|.+.+.. |.. ..+|.||. .+|+|++.+++|+++|.+|+.+|+++||++|||++++|.+ .
T Consensus 116 -----~~~~~~~~~e~~~~~~~p~~--~~~n~wP~--~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~--~ 184 (337)
T PLN02639 116 -----RKEKVHNWRDYLRLHCYPLD--KYVPEWPS--NPPSFKEIVSTYCREVRELGFRLQEAISESLGLEKDYIKN--V 184 (337)
T ss_pred -----ccCcccCchheEEeeecCCc--ccchhCcc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH--H
Confidence 1123568999987752 221 13688997 5789999999999999999999999999999999999985 5
Q ss_pred cCCCcccceeccCCCCCCCCCCCccccccccccCcceeEecC-CCCCceeec
Q 028254 160 LDAPMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATD-GVPGLQACL 210 (211)
Q Consensus 160 ~~~~~~~lr~~~Yp~~~~~~~~~~~~~~~HtD~g~lTiL~qd-~~~GLQV~~ 210 (211)
+....+.+|++||||++. ++..+|+++|||+|+||||+|| +++||||++
T Consensus 185 ~~~~~~~lrl~~YP~~~~--~~~~~g~~~HTD~g~lTlL~qd~~v~GLQV~~ 234 (337)
T PLN02639 185 LGEQGQHMAVNYYPPCPE--PELTYGLPAHTDPNALTILLQDQQVAGLQVLK 234 (337)
T ss_pred hCCCccEEEEEcCCCCCC--cccccCCCCCcCCCceEEEEecCCcCceEeec
Confidence 566677899999999976 4567899999999999999998 499999975
No 18
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=100.00 E-value=1.5e-48 Score=326.56 Aligned_cols=196 Identities=36% Similarity=0.551 Sum_probs=162.8
Q ss_pred CCCCCeEeCCCc---c---hHHHHHHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhhcccC--Cccc
Q 028254 4 ALQLPVIDLSSP---D---RLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKE--HRGY 75 (211)
Q Consensus 4 ~~~iP~IDl~~~---~---~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~--~~Gy 75 (211)
..+||+|||+.. + +.+++++|.+||++||||||+||||+.++++++++.+++||+||.|+|+++.... ++||
T Consensus 49 ~~~iPvIDls~l~~~~~~~r~~~~~~l~~Ac~~~GFF~l~nHGI~~~li~~~~~~~~~FF~LP~eeK~~~~~~~~~~~Gy 128 (362)
T PLN02393 49 EINIPVIDLSSLFSDDARLRDATLRAISEACREWGFFQVVNHGVRPELMDRAREAWREFFHLPLEVKQRYANSPATYEGY 128 (362)
T ss_pred CCCCCeEECccccCCChHHHHHHHHHHHHHHHHCcEEEEEeCCCCHHHHHHHHHHHHHHHcCCHHHHHhhhcccCccccc
Confidence 357999999843 2 3567999999999999999999999999999999999999999999999987543 7899
Q ss_pred c-cccccccCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhh
Q 028254 76 T-ALCDEILDPSSTSEGDPKESFYIGPLEGTLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFF 154 (211)
Q Consensus 76 ~-~~~~e~~~~~~~~~~d~~E~~~~~~~~~~~~~~n~wP~~~~~~~f~~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~ 154 (211)
. ..+.+. ....||+|.|+++........+|.||. .+++|++.+++|+++|.+++.+||++|+++||+++++|
T Consensus 129 ~~~~~~~~-----~~~~d~~e~~~~~~~~~~~~~~n~wP~--~~~~fr~~~~~y~~~~~~la~~ll~~la~~Lgl~~~~f 201 (362)
T PLN02393 129 GSRLGVEK-----GAILDWSDYYFLHYLPSSLKDPNKWPS--LPPSCRELIEEYGEEVVKLCGRLMKVLSVNLGLEEDRL 201 (362)
T ss_pred cccccccc-----ccccCchhheeeeecCccccchhhCcc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 4 333332 235789999887631111125789997 56899999999999999999999999999999999999
Q ss_pred hcccccCC---CcccceeccCCCCCCCCCCCccccccccccCcceeEecC-CCCCceeec
Q 028254 155 EKVGALDA---PMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATD-GVPGLQACL 210 (211)
Q Consensus 155 ~~~~~~~~---~~~~lr~~~Yp~~~~~~~~~~~~~~~HtD~g~lTiL~qd-~~~GLQV~~ 210 (211)
.+ .+.. +.+.+|++|||+|+. ++..+|+++|||+|+||||+|+ +++||||++
T Consensus 202 ~~--~~~~~~~~~~~lRl~~YP~~p~--~~~~~g~~~HtD~g~lTlL~q~~~v~GLQV~~ 257 (362)
T PLN02393 202 QN--AFGGEDGVGACLRVNYYPKCPQ--PDLTLGLSPHSDPGGMTILLPDDNVAGLQVRR 257 (362)
T ss_pred HH--HhCCCccccceeeeeecCCCCC--cccccccccccCCceEEEEeeCCCCCcceeeE
Confidence 86 3332 236899999999976 4567899999999999999984 699999974
No 19
>PLN02947 oxidoreductase
Probab=100.00 E-value=3.5e-48 Score=324.62 Aligned_cols=195 Identities=28% Similarity=0.433 Sum_probs=160.4
Q ss_pred CCCCCeEeCCCc---chHHHHHHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhhcccC---Cccccc
Q 028254 4 ALQLPVIDLSSP---DRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKE---HRGYTA 77 (211)
Q Consensus 4 ~~~iP~IDl~~~---~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~---~~Gy~~ 77 (211)
..+||||||+.. ++..++++|++||++||||||+|||||.++++++++.+++||+||.|+|+++.... ..||..
T Consensus 64 ~~~iPvIDls~l~~~~~~~~~~~l~~Ac~~~GFF~v~nHGIp~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~gyg~ 143 (374)
T PLN02947 64 NLKLPVIDLAELRGSNRPHVLATLAAACREYGFFQVVNHGVPSEVIGGMIDVARRFFELPLEERAKYMSADMRAPVRYGT 143 (374)
T ss_pred CCCCCeEECcccCCccHHHHHHHHHHHHHHCcEEEEEcCCCCHHHHHHHHHHHHHHhcCCHHHHhhhhcccCCCCeeecc
Confidence 457999999854 34567999999999999999999999999999999999999999999999985432 456643
Q ss_pred ccccccCCCCCCCCCcccccccCC-CCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---hhh
Q 028254 78 LCDEILDPSSTSEGDPKESFYIGP-LEGTLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLN---EDF 153 (211)
Q Consensus 78 ~~~e~~~~~~~~~~d~~E~~~~~~-~~~~~~~~n~wP~~~~~~~f~~~~~~y~~~~~~l~~~ll~~la~~Lgl~---~~~ 153 (211)
.... ......+|+|.+.+.. |... .+|.||+ .+++||+.+++|+++|.+|+.+|+++||++|||+ .++
T Consensus 144 ~~~~----~~~~~~~~~e~~~~~~~p~~~--~~~~WP~--~~~~fr~~~~~Y~~~~~~L~~~ll~~la~~Lgl~~~~~~~ 215 (374)
T PLN02947 144 SFNQ----NKDAVFCWRDFLKLVCHPLSD--VLPHWPS--SPADLRKVAATYAKATKRLFLELMEAILESLGIVKRGSDE 215 (374)
T ss_pred cccc----ccccccCceeceeeecCCccc--ccccCcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccchHH
Confidence 2111 1123568999887652 2211 3689997 5789999999999999999999999999999997 445
Q ss_pred hhcccccCCCcccceeccCCCCCCCCCCCccccccccccCcceeEecCCCCCceeec
Q 028254 154 FEKVGALDAPMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDGVPGLQACL 210 (211)
Q Consensus 154 ~~~~~~~~~~~~~lr~~~Yp~~~~~~~~~~~~~~~HtD~g~lTiL~qd~~~GLQV~~ 210 (211)
|.+ .+....+.+|+||||||+. ++..+|+++|||+|+||||+||+++||||++
T Consensus 216 ~~~--~~~~~~~~lrln~YPp~p~--~~~~~G~~~HTD~g~lTlL~Qd~v~GLQV~~ 268 (374)
T PLN02947 216 LLE--EFEAGSQMMVVNCYPACPE--PELTLGMPPHSDYGFLTLLLQDEVEGLQIMH 268 (374)
T ss_pred HHH--HhcCcceeeeeecCCCCCC--cccccCCCCccCCCceEEEEecCCCCeeEeE
Confidence 653 4555678999999999986 4668999999999999999999999999985
No 20
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=100.00 E-value=4.8e-48 Score=319.50 Aligned_cols=193 Identities=24% Similarity=0.425 Sum_probs=157.7
Q ss_pred CCCCeEeCCCcchHHHHHHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhhcccCCcccccccccccC
Q 028254 5 LQLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKEHRGYTALCDEILD 84 (211)
Q Consensus 5 ~~iP~IDl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~Gy~~~~~e~~~ 84 (211)
.+||||||++++ ..++|.+||++||||||+||||+.++++++++.+++||+||.|+|+++.....+||......
T Consensus 25 ~~iPvIDls~~~---~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~e~K~~~~~~~~~Gy~~~~~~--- 98 (335)
T PLN02156 25 VLIPVIDLTDSD---AKTQIVKACEEFGFFKVINHGVRPDLLTQLEQEAIGFFALPHSLKDKAGPPDPFGYGTKRIG--- 98 (335)
T ss_pred CCCCcccCCChH---HHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhcCCCCCcccCccccC---
Confidence 359999998542 36789999999999999999999999999999999999999999999865445588542211
Q ss_pred CCCCCCCCcccccccCCCCCC--CCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-hhhhhccccc-
Q 028254 85 PSSTSEGDPKESFYIGPLEGT--LSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLN-EDFFEKVGAL- 160 (211)
Q Consensus 85 ~~~~~~~d~~E~~~~~~~~~~--~~~~n~wP~~~~~~~f~~~~~~y~~~~~~l~~~ll~~la~~Lgl~-~~~~~~~~~~- 160 (211)
.....+|+|.|.+...... ...+|.||. .++.|++.+.+|+++|++|+.+|+++||++||++ +++|.+ ++
T Consensus 99 --~~~~~~~~e~~~~~~~~~~~~~~~~~~wp~--~p~~fr~~~~~Y~~~~~~L~~~ll~~la~~LGl~~~~~f~~--~~~ 172 (335)
T PLN02156 99 --PNGDVGWLEYILLNANLCLESHKTTAVFRH--TPAIFREAVEEYMKEMKRMSSKVLEMVEEELKIEPKEKLSK--LVK 172 (335)
T ss_pred --CCCCCCceeeEeeecCCccccccchhcCcc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCcHHHHHH--Hhc
Confidence 1124589999988732111 114688997 4689999999999999999999999999999996 478875 33
Q ss_pred -CCCcccceeccCCCCCCCCCCCccccccccccCcceeEecCCCCCceee
Q 028254 161 -DAPMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDGVPGLQAC 209 (211)
Q Consensus 161 -~~~~~~lr~~~Yp~~~~~~~~~~~~~~~HtD~g~lTiL~qd~~~GLQV~ 209 (211)
....+.+|+||||+|+....+..+|+++|||+|+||||+||+++||||+
T Consensus 173 ~~~~~~~lRl~~YP~~~~~~~~~~~g~~~HTD~g~lTlL~Qd~v~GLQV~ 222 (335)
T PLN02156 173 VKESDSCLRMNHYPEKEETPEKVEIGFGEHTDPQLISLLRSNDTAGLQIC 222 (335)
T ss_pred CCCccceEeEEeCCCCCCCccccccCCCCccCCCceEEEEeCCCCceEEE
Confidence 2345789999999998543345789999999999999999999999997
No 21
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=7.4e-48 Score=319.08 Aligned_cols=197 Identities=28% Similarity=0.370 Sum_probs=155.1
Q ss_pred CCCCCeEeCCCcchHHHHHHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhhcc-cCC----cccccc
Q 028254 4 ALQLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLAR-KEH----RGYTAL 78 (211)
Q Consensus 4 ~~~iP~IDl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~-~~~----~Gy~~~ 78 (211)
..+||+|||+.. .+++|.+||++||||||+|||||.++++++++.+++||+||.|+|+++.. ... .||...
T Consensus 36 ~~~IPvIDls~~----~~~~l~~A~~~~GFF~v~nHGI~~~li~~~~~~s~~FF~LP~eeK~k~~~~~~~~~~~~g~~~~ 111 (341)
T PLN02984 36 DIDIPVIDMECL----DMEKLREACKDWGIFRLENHGIPLTLMSQLKEISESLLSLPFESKRELFGVNSPLSYFWGTPAL 111 (341)
T ss_pred cCCCCeEeCcHH----HHHHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhcccCCCCccccCcccc
Confidence 346999999855 25799999999999999999999999999999999999999999999852 212 233221
Q ss_pred ccccc---CCCCCCCCCcccccccCCCCCCCCCCCCC-CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--hh
Q 028254 79 CDEIL---DPSSTSEGDPKESFYIGPLEGTLSSMNQW-PSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLN--ED 152 (211)
Q Consensus 79 ~~e~~---~~~~~~~~d~~E~~~~~~~~~~~~~~n~w-P~~~~~~~f~~~~~~y~~~~~~l~~~ll~~la~~Lgl~--~~ 152 (211)
..+.. ........|++|.|.++..... ..+.| |.++.+|+||+++++|+++|.+|+.+||++||++||++ ++
T Consensus 112 ~~~~~~~~~~~~~~~~D~kE~f~~~~~~~~--~~~~~p~~~~~~p~fr~~~~~y~~~~~~La~~ll~~lA~~Lgl~~~~~ 189 (341)
T PLN02984 112 TPSGKALSRGPQESNVNWVEGFNIPLSSLS--LLQTLSCSDPKLESFRVLMEEYGKHLTRIAVTLFEAIAKTLSLELSGD 189 (341)
T ss_pred cccccccccccccCCCCeeeEEeCcCCchh--hhhhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchh
Confidence 11111 1101124799999998732111 11223 32225689999999999999999999999999999999 99
Q ss_pred hhhcccccCCCcccceeccCCCCCCCCCCCccccccccccCcceeEecCCCCCceeec
Q 028254 153 FFEKVGALDAPMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDGVPGLQACL 210 (211)
Q Consensus 153 ~~~~~~~~~~~~~~lr~~~Yp~~~~~~~~~~~~~~~HtD~g~lTiL~qd~~~GLQV~~ 210 (211)
+|.+ .+..+.+.||++|||||+. ++..+|+++|||+|+||||+||+++||||++
T Consensus 190 ~f~~--~~~~~~~~lRl~~YPp~~~--~~~~~g~~aHTD~g~lTlL~Qd~v~GLQV~~ 243 (341)
T PLN02984 190 QKMS--YLSESTGVIRVYRYPQCSN--EAEAPGMEVHTDSSVISILNQDEVGGLEVMK 243 (341)
T ss_pred HHHH--HhcCccceEEEEeCCCCCC--cccccCccCccCCCceEEEEeCCCCCeeEee
Confidence 9975 5666778999999999975 4567899999999999999999999999975
No 22
>PLN02904 oxidoreductase
Probab=100.00 E-value=4.2e-47 Score=316.83 Aligned_cols=196 Identities=24% Similarity=0.424 Sum_probs=156.7
Q ss_pred CCCCeEeCCCc----chHHHHHHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhhcccCCcccccccc
Q 028254 5 LQLPVIDLSSP----DRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKEHRGYTALCD 80 (211)
Q Consensus 5 ~~iP~IDl~~~----~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~Gy~~~~~ 80 (211)
..||+|||+.. .+.+++++|.+||++||||||+||||+.++++++++++++||+||.|+|+++......||.+.+.
T Consensus 50 ~~iPvIDls~~~~~~~r~~~~~~l~~Ac~~~GFf~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~~~g~ 129 (357)
T PLN02904 50 ITLPVIDLSLLHDPLLRSCVIHEIEMACKGFGFFQVINHGIPSSVVKDALDAATRFFDLPVDEKMLLVSDNVHEPVRYGT 129 (357)
T ss_pred CCCCEEECcccCCchhHHHHHHHHHHHHHHCceEEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHhhhcccCCCCcccccc
Confidence 57999999843 23557999999999999999999999999999999999999999999999986533222222222
Q ss_pred cccCCCCCCCCCcccccccCC-CCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhcccc
Q 028254 81 EILDPSSTSEGDPKESFYIGP-LEGTLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFFEKVGA 159 (211)
Q Consensus 81 e~~~~~~~~~~d~~E~~~~~~-~~~~~~~~n~wP~~~~~~~f~~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~~~ 159 (211)
+. ........+|+|.+.... +.. ..+|.||. .+|+||+++.+|+++|.+|+.+|+++||++|||++++|.+ .
T Consensus 130 ~~-~~~~~~~~~~~d~~~~~~~p~~--~~~n~WP~--~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~--~ 202 (357)
T PLN02904 130 SL-NHSTDRVHYWRDFIKHYSHPLS--KWINLWPS--NPPCYKEKVGKYAEATHVLHKQLIEAISESLGLEKNYLQE--E 202 (357)
T ss_pred cc-cccCCCCCCceEEeeeccCCcc--cccccCcc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH--H
Confidence 11 111122346777655431 211 14689997 5799999999999999999999999999999999999985 5
Q ss_pred cCCCcccceeccCCCCCCCCCCCccccccccccCcceeEecCCCCCceeec
Q 028254 160 LDAPMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDGVPGLQACL 210 (211)
Q Consensus 160 ~~~~~~~lr~~~Yp~~~~~~~~~~~~~~~HtD~g~lTiL~qd~~~GLQV~~ 210 (211)
+....+.||++|||||+. ++..+|+++|||+|+||||+|+ ++||||++
T Consensus 203 ~~~~~~~lrl~~YPp~p~--~~~~~g~~~HtD~g~lTlL~qd-~~GLQV~~ 250 (357)
T PLN02904 203 IEEGSQVMAVNCYPACPE--PEIALGMPPHSDFGSLTILLQS-SQGLQIMD 250 (357)
T ss_pred hcCcccEEEeeecCCCCC--cccccCCcCccCCCceEEEecC-CCeeeEEe
Confidence 566677899999999976 4568999999999999999997 59999985
No 23
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=100.00 E-value=8e-47 Score=310.46 Aligned_cols=196 Identities=34% Similarity=0.553 Sum_probs=165.0
Q ss_pred CCCCCeEeCCCcc-----hHHHHHHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhhcccC--Ccccc
Q 028254 4 ALQLPVIDLSSPD-----RLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKE--HRGYT 76 (211)
Q Consensus 4 ~~~iP~IDl~~~~-----~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~--~~Gy~ 76 (211)
..+||+|||+... +..++++|++||++||||+|+|||||.++++++++.+++||+||.|+|+++.... ..||.
T Consensus 15 ~~~iPvIDls~~~~~~~~~~~~~~~i~~Ace~wGfFqviNHGI~~~l~~~~~~~~~~fF~lP~eeK~k~~~~~~~~~gY~ 94 (322)
T KOG0143|consen 15 ELDIPVIDLSCLDSDDPGREEVVEKLREACEEWGFFQVINHGISLELLDKVKEASKEFFELPLEEKLKVASEPGKYRGYG 94 (322)
T ss_pred CCCcCeEECCCCCCcchhHHHHHHHHHHHHHHCCeeEEEcCCCCHHHHHHHHHHHHHHhcCCHHHHHhhccCCCCccccc
Confidence 3579999999432 4667899999999999999999999999999999999999999999999998755 68997
Q ss_pred cccccccCCCCCCCCCcccccccCC-CCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhh
Q 028254 77 ALCDEILDPSSTSEGDPKESFYIGP-LEGTLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFFE 155 (211)
Q Consensus 77 ~~~~e~~~~~~~~~~d~~E~~~~~~-~~~~~~~~n~wP~~~~~~~f~~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~ 155 (211)
...... .....+|.+.+.+.. |... ..++.||+ .++.||+++.+|.+++.+++..|+++|+++||++..++.
T Consensus 95 ~~~~~~----~~~~~~w~d~~~~~~~p~~~-~~~~~wp~--~p~~~re~~~eY~~~~~~L~~~l~~~l~eslgl~~~~~~ 167 (322)
T KOG0143|consen 95 TSFILS----PLKELDWRDYLTLLSAPESS-FDPNLWPE--GPPEFRETMEEYAKEVMELSEKLLRLLSESLGLEPEYLE 167 (322)
T ss_pred cccccc----ccccccchhheeeeccCccc-cCcccCcc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 654321 123578888887652 2211 26789998 689999999999999999999999999999999876665
Q ss_pred cccccCC-CcccceeccCCCCCCCCCCCccccccccccCcceeEecC-CCCCceeec
Q 028254 156 KVGALDA-PMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATD-GVPGLQACL 210 (211)
Q Consensus 156 ~~~~~~~-~~~~lr~~~Yp~~~~~~~~~~~~~~~HtD~g~lTiL~qd-~~~GLQV~~ 210 (211)
+ .+++ ....+|+|||||||. ++.++|+++|||.|+||||+|| +|+||||++
T Consensus 168 ~--~~~~~~~~~~r~n~Yp~cp~--pe~~lGl~~HtD~~~lTiLlqd~~V~GLQv~~ 220 (322)
T KOG0143|consen 168 K--LFGETGGQVMRLNYYPPCPE--PELTLGLGAHTDKSFLTILLQDDDVGGLQVFT 220 (322)
T ss_pred H--hhCCccceEEEEeecCCCcC--ccccccccCccCcCceEEEEccCCcCceEEEe
Confidence 4 4554 466999999999997 6789999999999999999998 899999983
No 24
>PLN02365 2-oxoglutarate-dependent dioxygenase
Probab=100.00 E-value=7.2e-47 Score=309.37 Aligned_cols=189 Identities=26% Similarity=0.388 Sum_probs=154.7
Q ss_pred CCCCCCCCeEeCCCcchHHHHHHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhhcccC-Cccccccc
Q 028254 1 MTEALQLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKE-HRGYTALC 79 (211)
Q Consensus 1 m~~~~~iP~IDl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~-~~Gy~~~~ 79 (211)
|+ ...||||||+... +.+++|++||++||||||+||||+.++++++++++++||+||.|+|+++.... .+||.+.+
T Consensus 1 ~~-~~~iPvIDls~~~--~~~~~l~~Ac~~~GfF~l~nHGi~~~l~~~~~~~~~~FF~LP~e~K~~~~~~~~~~GY~~~~ 77 (300)
T PLN02365 1 MA-EVNIPTIDLEEFP--GQIEKLREACERWGCFRVVNHGVSLSLMAEMKKVVRSLFDLPDEVKRRNTDVILGSGYMAPS 77 (300)
T ss_pred CC-cCCCCEEEChhhH--HHHHHHHHHHHHCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHhhccCCCCCCCCCCcC
Confidence 56 5579999998663 23689999999999999999999999999999999999999999999975433 78998754
Q ss_pred ccccCCCCCCCCCcccccccCCCCCCCCCCCCCCCC-CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-Chhhhhcc
Q 028254 80 DEILDPSSTSEGDPKESFYIGPLEGTLSSMNQWPSL-EILPTWRSTMEYYHQKVLSAGRRLIHLIALALNL-NEDFFEKV 157 (211)
Q Consensus 80 ~e~~~~~~~~~~d~~E~~~~~~~~~~~~~~n~wP~~-~~~~~f~~~~~~y~~~~~~l~~~ll~~la~~Lgl-~~~~~~~~ 157 (211)
. ..+++|.|.+...... ..++.||.. +.+|+||+.+++|+++|.+|+.+|+++||++||| ++++|.+
T Consensus 78 ~---------~~~~~e~~~~~~~~~~-~~~~~~~~~~~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~f~~- 146 (300)
T PLN02365 78 E---------VNPLYEALGLYDMASP-QAVDTFCSQLDASPHQRETIKKYAKAIHDLAMDLARKLAESLGLVEGDFFQG- 146 (300)
T ss_pred C---------CCCchhheecccccCc-hhhhhccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHhh-
Confidence 2 2467888877621111 012334421 1467899999999999999999999999999999 8888874
Q ss_pred cccCCCcccceeccCCCCCCCCCCCccccccccccCcceeEecCC-CCCceeec
Q 028254 158 GALDAPMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDG-VPGLQACL 210 (211)
Q Consensus 158 ~~~~~~~~~lr~~~Yp~~~~~~~~~~~~~~~HtD~g~lTiL~qd~-~~GLQV~~ 210 (211)
. .+.+|++|||+++. ++..+|+++|||+|+||||+||+ ++||||++
T Consensus 147 -~----~~~lr~~~YP~~p~--~~~~~g~~~HtD~g~lTlL~qd~~~~GLqV~~ 193 (300)
T PLN02365 147 -W----PSQFRINKYNFTPE--TVGSSGVQIHTDSGFLTILQDDENVGGLEVMD 193 (300)
T ss_pred -c----ccceeeeecCCCCC--ccccccccCccCCCceEEEecCCCcCceEEEE
Confidence 2 36899999999875 45678999999999999999984 99999975
No 25
>PLN02403 aminocyclopropanecarboxylate oxidase
Probab=100.00 E-value=1.1e-46 Score=307.75 Aligned_cols=188 Identities=27% Similarity=0.462 Sum_probs=153.0
Q ss_pred CCCeEeCCCc---chHHHHHHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhhcccCCcccccccccc
Q 028254 6 QLPVIDLSSP---DRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKEHRGYTALCDEI 82 (211)
Q Consensus 6 ~iP~IDl~~~---~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~Gy~~~~~e~ 82 (211)
+||||||+.. ++.+++++|++||++||||||+||||+.++++++++.+++||+||.|+|. +......++...+
T Consensus 2 ~iPvIDls~~~~~~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~l~~~~~~~~~~FF~LP~e~k~-~~~~~~~~~~~~~--- 77 (303)
T PLN02403 2 EIPVIDFDQLDGEKRSKTMSLLHQACEKWGFFQVENHGIDKKLMEKVKQLVNSHYEENLKESF-YESEIAKALDNEG--- 77 (303)
T ss_pred CCCeEeCccCCcccHHHHHHHHHHHHHhCceEEEECCCCCHHHHHHHHHHHHHHhcCCHHHHh-hcccccCcccccC---
Confidence 6999999854 34567999999999999999999999999999999999999999999986 2211122222111
Q ss_pred cCCCCCCCCCcccccccCC-CCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhcccccC
Q 028254 83 LDPSSTSEGDPKESFYIGP-LEGTLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFFEKVGALD 161 (211)
Q Consensus 83 ~~~~~~~~~d~~E~~~~~~-~~~~~~~~n~wP~~~~~~~f~~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~~~~~ 161 (211)
.....||+|.|.++. |.. ..|.||+ .+|+||+.+++|+++|.+++..|+++++++||+++++|.+ .+.
T Consensus 78 ----~~~~~d~kE~~~~~~~p~~---~~~~wP~--~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~--~~~ 146 (303)
T PLN02403 78 ----KTSDVDWESSFFIWHRPTS---NINEIPN--LSEDLRKTMDEYIAQLIKLAEKLSELMSENLGLDKDYIKE--AFS 146 (303)
T ss_pred ----CCCCccHhhhcccccCCcc---chhhCCC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH--Hhc
Confidence 112469999999873 321 4688996 5699999999999999999999999999999999999985 443
Q ss_pred ---CCcccceeccCCCCCCCCCCCccccccccccCcceeEecC-CCCCceeec
Q 028254 162 ---APMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATD-GVPGLQACL 210 (211)
Q Consensus 162 ---~~~~~lr~~~Yp~~~~~~~~~~~~~~~HtD~g~lTiL~qd-~~~GLQV~~ 210 (211)
.+...+|++|||+++. ++..+|+++|||+|+||||+|+ +++||||++
T Consensus 147 ~~~~~~~~lrl~~YP~~~~--~~~~~G~~~HtD~g~lTlL~q~~~v~GLqV~~ 197 (303)
T PLN02403 147 GNKGPSVGTKVAKYPECPR--PELVRGLREHTDAGGIILLLQDDQVPGLEFLK 197 (303)
T ss_pred cCCCccceeeeEcCCCCCC--cccccCccCccCCCeEEEEEecCCCCceEecc
Confidence 2345699999999875 4456799999999999999997 599999964
No 26
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=2.7e-35 Score=236.12 Aligned_cols=153 Identities=24% Similarity=0.316 Sum_probs=124.3
Q ss_pred HHHHHHHhhc-CCHHHHhhhcccC----CcccccccccccCCCCCCCCCcccccccCC-CCCCCCCCCCCCCCCCchhHH
Q 028254 49 MFNESKKFFS-LQLEDKMKLARKE----HRGYTALCDEILDPSSTSEGDPKESFYIGP-LEGTLSSMNQWPSLEILPTWR 122 (211)
Q Consensus 49 ~~~~~~~fF~-lp~e~K~~~~~~~----~~Gy~~~~~e~~~~~~~~~~d~~E~~~~~~-~~~~~~~~n~wP~~~~~~~f~ 122 (211)
|...+++||+ ||.|+|+++.... ++||.....+.. ......||+|.|.+.. |.. ...+|.||+ .+|.|+
T Consensus 1 ~~~~~~~FF~~LP~eeK~~~~~~~~~~~~~GY~~~~~~~~--~~~~~~d~kE~~~~~~~p~~-~~~~n~wP~--~~~~f~ 75 (262)
T PLN03001 1 MRSLGLSFFKDSPMEEKLRYACDPGSAASEGYGSRMLLGA--KDDTVLDWRDFFDHHTFPLS-RRNPSHWPD--FPPDYR 75 (262)
T ss_pred ChHHHHHHHhhCCHHHHHHhhcCCCCCCcccccccccccc--CCCCccCchheeEeeecCcc-ccchhhCCC--CcHHHH
Confidence 3578999997 9999999987532 679954332211 1123569999999852 221 125799997 468999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhcccccCCCcccceeccCCCCCCCCCCCccccccccccCcceeEecCC
Q 028254 123 STMEYYHQKVLSAGRRLIHLIALALNLNEDFFEKVGALDAPMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDG 202 (211)
Q Consensus 123 ~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~lr~~~Yp~~~~~~~~~~~~~~~HtD~g~lTiL~qd~ 202 (211)
+.+.+|++.|.+|+.+|+++|+++||+++++|.+ .+....+.+|++|||||+. ++..+|+++|||+|+||||+||+
T Consensus 76 ~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~--~~~~~~~~lrl~~YP~~~~--~~~~~g~~~HtD~g~lTlL~qd~ 151 (262)
T PLN03001 76 EVVGEYGDCMKALAQKLLAFISESLGLPCSCIED--AVGDFYQNITVSYYPPCPQ--PELTLGLQSHSDFGAITLLIQDD 151 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH--HhcCcchhheeecCCCCCC--cccccCCcCCcCCCeeEEEEeCC
Confidence 9999999999999999999999999999999986 4555667899999999986 45789999999999999999999
Q ss_pred CCCceeec
Q 028254 203 VPGLQACL 210 (211)
Q Consensus 203 ~~GLQV~~ 210 (211)
++||||++
T Consensus 152 v~GLqV~~ 159 (262)
T PLN03001 152 VEGLQLLK 159 (262)
T ss_pred CCceEEee
Confidence 99999975
No 27
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=99.95 E-value=8.4e-29 Score=176.08 Aligned_cols=105 Identities=49% Similarity=0.819 Sum_probs=86.6
Q ss_pred CCeEeCCC--cchHHHHHHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhhcccC-Cccccccccccc
Q 028254 7 LPVIDLSS--PDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKE-HRGYTALCDEIL 83 (211)
Q Consensus 7 iP~IDl~~--~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~-~~Gy~~~~~e~~ 83 (211)
||||||+. .++.+++++|.+||++||||||+||||+.++++++++++++||+||.|+|+++.... ++||.+.+.+..
T Consensus 1 iPvIDls~~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~l~~~~~~~~~~fF~lp~e~K~~~~~~~~~~Gy~~~~~~~~ 80 (116)
T PF14226_consen 1 IPVIDLSPDPADREEVAEQLRDACEEWGFFYLVNHGIPQELIDRVFAAAREFFALPLEEKQKYARSPSYRGYSPPGSEST 80 (116)
T ss_dssp --EEEHGGCHHHHHHHHHHHHHHHHHTSEEEEESSSSSHHHHHHHHHHHHHHHCSHHHHHHHHBCCTTCSEEEESEEECC
T ss_pred CCeEECCCCCccHHHHHHHHHHHHHhCCEEEEecccccchhhHHHHHHHHHHHHhhHHHHHHhcCCCCCcccccCCcccc
Confidence 79999983 345678999999999999999999999999999999999999999999999997665 999999988875
Q ss_pred CCCCCCCCCcccccccCCCCC-C------CCCCCCCCC
Q 028254 84 DPSSTSEGDPKESFYIGPLEG-T------LSSMNQWPS 114 (211)
Q Consensus 84 ~~~~~~~~d~~E~~~~~~~~~-~------~~~~n~wP~ 114 (211)
.. +..|++|+|+++.+.. + ...+|.||+
T Consensus 81 ~~---~~~d~~E~~~~~~~~~~~~p~~~~~~~~n~WP~ 115 (116)
T PF14226_consen 81 DG---GKPDWKESFNIGPDLPEDDPAYPPLYGPNIWPD 115 (116)
T ss_dssp TT---CCCCSEEEEEEECC-STTCHHTGCTS-GGGS-T
T ss_pred CC---CCCCceEEeEEECCCCccccccccccCCCCCCC
Confidence 43 3689999999985421 1 237899996
No 28
>PLN03176 flavanone-3-hydroxylase; Provisional
Probab=99.84 E-value=8.8e-21 Score=134.76 Aligned_cols=73 Identities=33% Similarity=0.676 Sum_probs=63.8
Q ss_pred CCCCeEeCCCcc-----hHHHHHHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhhcccC--Cccccc
Q 028254 5 LQLPVIDLSSPD-----RLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKE--HRGYTA 77 (211)
Q Consensus 5 ~~iP~IDl~~~~-----~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~--~~Gy~~ 77 (211)
.+||||||+... +.+.+++|.+||++||||||+||||+.++++++++.+++||+||.|+|+++.... ..||..
T Consensus 36 ~~iPvIDls~~~~~~~~~~~~~~~L~~A~~~~GFf~l~nhGi~~elid~~~~~~~~FF~LP~e~K~k~~~~~~~~~gy~~ 115 (120)
T PLN03176 36 NEIPVISIAGIDDGGEKRAEICNKIVEACEEWGVFQIVDHGVDAKLVSEMTTLAKEFFALPPEEKLRFDMSGGKKGGFIV 115 (120)
T ss_pred CCCCeEECccccCCchHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHHhcccCCCccCCcch
Confidence 479999998432 3456899999999999999999999999999999999999999999999987654 668843
No 29
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=98.86 E-value=1.2e-09 Score=74.88 Aligned_cols=41 Identities=39% Similarity=0.562 Sum_probs=33.8
Q ss_pred ccceeccCCCCCCCCCCCcccccccccc--CcceeEecCCCCCceeec
Q 028254 165 AFLRLLHYPGELVSSNQEVCGASAHSDY--GMITLLATDGVPGLQACL 210 (211)
Q Consensus 165 ~~lr~~~Yp~~~~~~~~~~~~~~~HtD~--g~lTiL~qd~~~GLQV~~ 210 (211)
+.+|+++||+ ++...++++|+|. +++|+|+|++++||||++
T Consensus 2 ~~~~~~~Y~~-----~~~~~~~~~H~D~~~~~~Til~~~~~~gL~~~~ 44 (98)
T PF03171_consen 2 SQLRLNRYPP-----PENGVGIGPHTDDEDGLLTILFQDEVGGLQVRD 44 (98)
T ss_dssp -EEEEEEE-S-----CCGCEEEEEEEES--SSEEEEEETSTS-EEEEE
T ss_pred CEEEEEECCC-----cccCCceeCCCcCCCCeEEEEecccchheeccc
Confidence 4699999997 2456799999999 999999998899999985
No 30
>PRK08130 putative aldolase; Validated
Probab=89.71 E-value=0.49 Score=36.94 Aligned_cols=37 Identities=24% Similarity=0.404 Sum_probs=32.0
Q ss_pred CCCeEeCCCcchHHHHHHHHHHHHhcCeEEEEecCCC
Q 028254 6 QLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVE 42 (211)
Q Consensus 6 ~iP~IDl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~ 42 (211)
.||+|++..+...+.++.+.+++.+...+.+.|||+=
T Consensus 127 ~i~v~~y~~~g~~~la~~~~~~l~~~~~vll~nHGvi 163 (213)
T PRK08130 127 HVPLIPYYRPGDPAIAEALAGLAARYRAVLLANHGPV 163 (213)
T ss_pred ccceECCCCCChHHHHHHHHHHhccCCEEEEcCCCCe
Confidence 5899998777777788899999999999999999963
No 31
>PRK08333 L-fuculose phosphate aldolase; Provisional
Probab=88.78 E-value=0.59 Score=35.59 Aligned_cols=37 Identities=16% Similarity=0.454 Sum_probs=31.6
Q ss_pred CCCeEeCCCcchHHHHHHHHHHHHhcCeEEEEecCCC
Q 028254 6 QLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVE 42 (211)
Q Consensus 6 ~iP~IDl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~ 42 (211)
.||++++..+...+.++++.+++.+...+.|.|||+=
T Consensus 120 ~v~v~~~~~~g~~~la~~~~~~l~~~~~vll~nHGv~ 156 (184)
T PRK08333 120 KIPILPFRPAGSVELAEQVAEAMKEYDAVIMERHGIV 156 (184)
T ss_pred CEeeecCCCCCcHHHHHHHHHHhccCCEEEEcCCCCE
Confidence 6899998766667788899999998899999999963
No 32
>PF07350 DUF1479: Protein of unknown function (DUF1479); InterPro: IPR010856 This family consists of several hypothetical Enterobacterial proteins, of around 420 residues in length. Members of this family are often known as YbiU. The function of this family is unknown.; PDB: 2CSG_A 2DBI_A 2DBN_A.
Probab=87.11 E-value=0.56 Score=40.28 Aligned_cols=54 Identities=15% Similarity=0.152 Sum_probs=37.9
Q ss_pred CCCCCeEeCCCcchHHHHHHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHhhc
Q 028254 4 ALQLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFS 58 (211)
Q Consensus 4 ~~~iP~IDl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~ 58 (211)
..-||+|||++.......++..+..++.|++.|.|. ||.+......+..++|.+
T Consensus 47 ~~~IP~i~f~di~~~~~~~~~~~~ir~rG~~VIR~V-vp~~ea~~w~~e~~~Y~~ 100 (416)
T PF07350_consen 47 SSIIPEIDFADIENGGVSEEFLAEIRRRGCVVIRGV-VPREEALAWKQELKEYLK 100 (416)
T ss_dssp --SS-EEEHHHHHCT---HHHHHHHHHHSEEEECTS-S-HHHHHHHHHHHHHHHH
T ss_pred CCCCceeeHHHHhCCCCCHHHHHHHHhcCEEEEeCC-CCHHHHHHHHHHHHHHHH
Confidence 346999999977655567788889999999988765 788887777777777754
No 33
>PRK05874 L-fuculose-phosphate aldolase; Validated
Probab=85.38 E-value=1.1 Score=35.11 Aligned_cols=37 Identities=11% Similarity=0.170 Sum_probs=31.8
Q ss_pred CCCeEeCCCcchHHHHHHHHHHHHhcCeEEEEecCCC
Q 028254 6 QLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVE 42 (211)
Q Consensus 6 ~iP~IDl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~ 42 (211)
.||++++..+...+.++.+.+++.+...+.|.|||+=
T Consensus 127 ~v~~~~y~~~gs~ela~~v~~~l~~~~~vlL~nHGv~ 163 (217)
T PRK05874 127 DVRCTEYAASGTPEVGRNAVRALEGRAAALIANHGLV 163 (217)
T ss_pred ceeeecCCCCCcHHHHHHHHHHhCcCCEEEEcCCCCe
Confidence 4888888766667889999999999999999999964
No 34
>PRK06833 L-fuculose phosphate aldolase; Provisional
Probab=82.41 E-value=1.7 Score=33.99 Aligned_cols=37 Identities=19% Similarity=0.175 Sum_probs=30.5
Q ss_pred CCCeEeCCCcchHHHHHHHHHHHHhcCeEEEEecCCC
Q 028254 6 QLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVE 42 (211)
Q Consensus 6 ~iP~IDl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~ 42 (211)
.||++.+..++..+.++.+.+++.+...+.|.|||+=
T Consensus 124 ~i~~~~y~~~gs~~la~~v~~~l~~~~~vll~nHGv~ 160 (214)
T PRK06833 124 NVRCAEYATFGTKELAENAFEAMEDRRAVLLANHGLL 160 (214)
T ss_pred CeeeccCCCCChHHHHHHHHHHhCcCCEEEECCCCCE
Confidence 5788888766666778888999999999999999963
No 35
>PRK08660 L-fuculose phosphate aldolase; Provisional
Probab=82.29 E-value=2.1 Score=32.48 Aligned_cols=35 Identities=17% Similarity=0.181 Sum_probs=29.2
Q ss_pred CCCeEeCCCcchHHHHHHHHHHHHhcCeEEEEecCC
Q 028254 6 QLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGV 41 (211)
Q Consensus 6 ~iP~IDl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi 41 (211)
.||++ +..+...+.++.+.+++.+.-.+.|.|||+
T Consensus 115 ~ipv~-~~~~~~~~la~~v~~~l~~~~~vll~nHG~ 149 (181)
T PRK08660 115 TIPVV-GGDIGSGELAENVARALSEHKGVVVRGHGT 149 (181)
T ss_pred CEeEE-eCCCCCHHHHHHHHHHHhhCCEEEEcCCCc
Confidence 58888 555666677889999999999999999996
No 36
>PRK08087 L-fuculose phosphate aldolase; Provisional
Probab=82.11 E-value=2 Score=33.63 Aligned_cols=37 Identities=14% Similarity=0.151 Sum_probs=31.2
Q ss_pred CCCeEeCCCcchHHHHHHHHHHHHhcCeEEEEecCCC
Q 028254 6 QLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVE 42 (211)
Q Consensus 6 ~iP~IDl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~ 42 (211)
.||++.+..++..+.++.+.+++.+...+.|.|||+=
T Consensus 122 ~v~~~~y~~~gs~~la~~~~~~l~~~~~vLl~nHGv~ 158 (215)
T PRK08087 122 SIPCAPYATFGTRELSEHVALALKNRKATLLQHHGLI 158 (215)
T ss_pred CceeecCCCCCCHHHHHHHHHHhCcCCEEEecCCCCE
Confidence 4899988777767778889999988889999999963
No 37
>PF00596 Aldolase_II: Class II Aldolase and Adducin N-terminal domain; InterPro: IPR001303 This entry represents the alpha/beta/alpha domain found in class II aldolases and adducin, usually at the N terminus. These proteins form part of a family that includes: rhamnulose-1-phosphate aldolase (4.1.2.19 from EC), L-fuculose phosphate aldolase (4.1.2.17 from EC) [, ] that is involved in the third step in fucose metabolism, L-ribulose- 5-phosphate 4-epimerase (5.1.3.4 from EC) involved in the third step of L-arabinose catabolism, a probable sugar isomerase SgbE, hypothetical proteins and the metazoan adducins which have not been ascribed any enzymatic function but which play a role in cell membrane cytoskeleton organisation. Adducins are members of the Ig superfamily and encode cell surface sialoglycoproteins expressed by cytokine-activated endothelium. This type I membrane protein mediates leukocyte-endothelial cell adhesion and signal transduction, and may play a role in the development of artherosclerosis and rheumatoid arthritis. Adducin is a cell-membrane skeletal protein that was first purified from human erythrocytes and subsequently isolated from bovine brain membranes. Isoforms of this protein have been detected in lung, kidney, testes and liver. Erythrocyte adducin is a 200kDa heterodimer protein, composed of alpha and beta subunits, present at about 30,000 copies per cell. It binds with high affinity to Ca(2+)/calmodulin and is a substrate for protein kinases A and C. Both alpha-adducin and beta-adducin show alternative splicing. Thus, there may be several different heterodimeric or homodimeric forms of adducin, each with a different functional specificity. It is thought to play a role in assembly of the spectrin-actin lattice that underlies the plasma membrane []. Missense mutations in both the alpha- and beta-adducin genes that alter amino acids that are normally phosphorylated have been associated with the regulation of blood pressure in the Milan hypertensive strain (MHS) of rats. Gamma adducin was isolated from human foetal brain []. It shows a high degree of similarity to the alpha and beta adducins.; GO: 0046872 metal ion binding; PDB: 2V9N_B 1GT7_B 2V9O_E 2V9M_B 2V9F_A 2UYV_A 1OJR_A 2V9G_C 2V29_B 2V9I_A ....
Probab=82.03 E-value=0.84 Score=34.57 Aligned_cols=37 Identities=32% Similarity=0.408 Sum_probs=30.6
Q ss_pred CCCCeEeCCCcchHHHHHHHHHHHH-hcCeEEEEecCC
Q 028254 5 LQLPVIDLSSPDRLSTAKSIRQACI-DYGFFYLVNHGV 41 (211)
Q Consensus 5 ~~iP~IDl~~~~~~~~~~~l~~A~~-~~Gff~l~nhgi 41 (211)
..||+|++..+...+.++.|.+++. +...+.+.|||+
T Consensus 122 ~~v~~~~~~~~~~~~l~~~i~~~l~~~~~~vll~nHG~ 159 (184)
T PF00596_consen 122 GEVPVVPYAPPGSEELAEAIAEALGEDRKAVLLRNHGV 159 (184)
T ss_dssp SCEEEE-THSTTCHHHHHHHHHHHTCTSSEEEETTTEE
T ss_pred ccceeeccccccchhhhhhhhhhhcCCceEEeecCCce
Confidence 4689999977666667888999999 889999999995
No 38
>PRK03634 rhamnulose-1-phosphate aldolase; Provisional
Probab=79.53 E-value=2.4 Score=34.52 Aligned_cols=37 Identities=11% Similarity=0.146 Sum_probs=31.1
Q ss_pred CCCeEeCCCcchHHHHHHHHHHHHhcCeEEEEecCCC
Q 028254 6 QLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVE 42 (211)
Q Consensus 6 ~iP~IDl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~ 42 (211)
.||++.+..+...+.++.+.+++.+...+.|.|||+=
T Consensus 179 ~i~vvpy~~pgs~eLa~~v~~~l~~~~avLL~nHGvv 215 (274)
T PRK03634 179 GVGIVPWMVPGTDEIGQATAEKMQKHDLVLWPKHGVF 215 (274)
T ss_pred ceeEecCCCCCCHHHHHHHHHHhccCCEEEEcCCCCe
Confidence 4788888777667778889999998899999999963
No 39
>PRK06755 hypothetical protein; Validated
Probab=78.70 E-value=2 Score=33.58 Aligned_cols=37 Identities=11% Similarity=0.099 Sum_probs=28.6
Q ss_pred CCCeEeCCCcchHHHHHHHHHHHHhcCeEEEEecCCC
Q 028254 6 QLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVE 42 (211)
Q Consensus 6 ~iP~IDl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~ 42 (211)
.||+|.+..+.....++.+.+++++...+.|.|||+-
T Consensus 136 ~IPiv~~~~~~~~~la~~~~~~~~~~~avLl~~HGv~ 172 (209)
T PRK06755 136 TIPIVEDEKKFADLLENNVPNFIEGGGVVLVHNYGMI 172 (209)
T ss_pred EEEEEeCCCchhHHHHHHHHhhccCCCEEEEcCCCeE
Confidence 5899998755445566677777778889999999963
No 40
>TIGR01086 fucA L-fuculose phosphate aldolase. Members of this family are L-fuculose phosphate aldolase from various Proteobacteria, encoded in fucose utilization operons. Homologs in other bacteria given similar annotation may share extensive sequence similarity but are not experimenally characterized and are not found in apparent fucose utilization operons; we consider their annotation as L-fuculose phosphate aldolase to be tenuous. This model has been narrowed in scope from the previous version.
Probab=77.72 E-value=2.9 Score=32.66 Aligned_cols=36 Identities=14% Similarity=0.308 Sum_probs=29.6
Q ss_pred CCCeEeCCCcchHHHHHHHHHHHHhcCeEEEEecCC
Q 028254 6 QLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGV 41 (211)
Q Consensus 6 ~iP~IDl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi 41 (211)
.||+|.+..+...+.++.+.+++.+...+.|.|||+
T Consensus 121 ~i~~v~y~~~gs~~la~~v~~~~~~~~~vLL~nHG~ 156 (214)
T TIGR01086 121 NIPCVPYATFGSTKLASEVVAGILKSKAILLLHHGL 156 (214)
T ss_pred CccccCCCCCChHHHHHHHHHHhhhCCEEehhcCCC
Confidence 478888876666667888888888889999999996
No 41
>TIGR02624 rhamnu_1P_ald rhamnulose-1-phosphate aldolase. Members of this family are the enzyme RhaD, rhamnulose-1-phosphate aldolase.
Probab=77.27 E-value=3 Score=33.90 Aligned_cols=37 Identities=11% Similarity=0.170 Sum_probs=31.5
Q ss_pred CCCeEeCCCcchHHHHHHHHHHHHhcCeEEEEecCCC
Q 028254 6 QLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVE 42 (211)
Q Consensus 6 ~iP~IDl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~ 42 (211)
.||++.+..+...+.++.+.+++++..-+.|.|||+=
T Consensus 177 ~i~vvp~~~pGs~eLA~~v~~~l~~~~avLL~nHGvv 213 (270)
T TIGR02624 177 GVGIIPWMVPGTNEIGEATAEKMKEHRLVLWPHHGIF 213 (270)
T ss_pred ccccccCcCCCCHHHHHHHHHHhccCCEEEEcCCCCe
Confidence 4788888777777888999999999999999999963
No 42
>PRK06357 hypothetical protein; Provisional
Probab=75.21 E-value=4.9 Score=31.51 Aligned_cols=37 Identities=22% Similarity=0.463 Sum_probs=28.0
Q ss_pred CCCeEeCCCcchHHHHHHHHHHHHhc------CeEEEEecCCC
Q 028254 6 QLPVIDLSSPDRLSTAKSIRQACIDY------GFFYLVNHGVE 42 (211)
Q Consensus 6 ~iP~IDl~~~~~~~~~~~l~~A~~~~------Gff~l~nhgi~ 42 (211)
.||++.+..+...+.++.+.+++++. ..+.|.|||+=
T Consensus 130 ~i~~~p~~~~gs~ela~~v~~~l~~~~~~~~~~~vLl~nHGvv 172 (216)
T PRK06357 130 KIPTLPFAPATSPELAEIVRKHLIELGDKAVPSAFLLNSHGIV 172 (216)
T ss_pred CcceecccCCCcHHHHHHHHHHHhhcCcccCCCEEEECCCCCe
Confidence 47888877665667778888888764 58999999963
No 43
>PRK06557 L-ribulose-5-phosphate 4-epimerase; Validated
Probab=75.06 E-value=3.2 Score=32.53 Aligned_cols=37 Identities=22% Similarity=0.163 Sum_probs=29.7
Q ss_pred CCCeEeCCCcchHHHHHHHHHHH--HhcCeEEEEecCCC
Q 028254 6 QLPVIDLSSPDRLSTAKSIRQAC--IDYGFFYLVNHGVE 42 (211)
Q Consensus 6 ~iP~IDl~~~~~~~~~~~l~~A~--~~~Gff~l~nhgi~ 42 (211)
.||++.+..+...+.++++.+++ .+...+.|.|||+-
T Consensus 130 ~ip~~~y~~~g~~ela~~i~~~l~~~~~~~vll~nHG~~ 168 (221)
T PRK06557 130 PIPVGPFALIGDEAIGKGIVETLKGGRSPAVLMQNHGVF 168 (221)
T ss_pred CeeccCCcCCCcHHHHHHHHHHhCcCCCCEEEECCCCce
Confidence 58888887666667788888888 77888999999964
No 44
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=74.49 E-value=5.4 Score=33.85 Aligned_cols=51 Identities=20% Similarity=0.074 Sum_probs=37.5
Q ss_pred CCCCeEeCCCc-chHHHHHHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHhhc
Q 028254 5 LQLPVIDLSSP-DRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFS 58 (211)
Q Consensus 5 ~~iP~IDl~~~-~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~ 58 (211)
..+|.||+++. ...+.+.++.+++.++|++.+.+-+++.+. +.+.++.|-.
T Consensus 108 ~~~~~~d~~~~~~~~~~~~~~~~~l~~~G~v~~rg~~~~~~~---~~~~~~~~G~ 159 (366)
T TIGR02409 108 LSLPKFDHEAVMKDDSVLLDWLSAVRDVGIAVLKGAPTKPGA---VEKLGKRIGF 159 (366)
T ss_pred ccCCceeHHHHhCCHHHHHHHHHHHHhccEEEEeCCCCCHHH---HHHHHHHhcc
Confidence 46788888754 345567889999999999999999887653 4455555543
No 45
>TIGR03328 salvage_mtnB methylthioribulose-1-phosphate dehydratase. Members of this family are the methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway. This pathway allows methylthioadenosine, left over from polyamine biosynthesis, to be recycled to methionine.
Probab=74.36 E-value=4.3 Score=31.10 Aligned_cols=36 Identities=19% Similarity=0.241 Sum_probs=28.0
Q ss_pred CCCeEeCCCcchHHHHHHHHHHHH---hcCeEEEEecCCC
Q 028254 6 QLPVIDLSSPDRLSTAKSIRQACI---DYGFFYLVNHGVE 42 (211)
Q Consensus 6 ~iP~IDl~~~~~~~~~~~l~~A~~---~~Gff~l~nhgi~ 42 (211)
.||+++. .+...+.++.+.++++ +...+.|.|||+=
T Consensus 126 ~vp~~~~-~~gs~ela~~~~~~l~~~~~~~avll~nHGv~ 164 (193)
T TIGR03328 126 TIPIFEN-TQDIARLADSVAPYLEAYPDVPGVLIRGHGLY 164 (193)
T ss_pred EEeeecC-CCChHHHHHHHHHHHhcCCCCCEEEEcCCcce
Confidence 4888875 5555677888989886 4789999999963
No 46
>cd00398 Aldolase_II Class II Aldolase and Adducin head (N-terminal) domain. Aldolases are ubiquitous enzymes catalyzing central steps of carbohydrate metabolism. Based on enzymatic mechanisms, this superfamily has been divided into two distinct classes (Class I and II). Class II enzymes are further divided into two sub-classes A and B. This family includes class II A aldolases and adducins which has not been ascribed any enzymatic function. Members of this class are primarily bacterial and eukaryotic in origin and include L-fuculose-1-phosphate, L-rhamnulose-1-phosphate aldolases and L-ribulose-5-phosphate 4-epimerases. They all share the ability to promote carbon-carbon bond cleavage and stabilize enolate intermediates using divalent cations.
Probab=72.77 E-value=2.8 Score=32.55 Aligned_cols=38 Identities=16% Similarity=0.142 Sum_probs=29.5
Q ss_pred CCCCeEeCCCc--chHHHHHHHHHHHHhcCeEEEEecCCC
Q 028254 5 LQLPVIDLSSP--DRLSTAKSIRQACIDYGFFYLVNHGVE 42 (211)
Q Consensus 5 ~~iP~IDl~~~--~~~~~~~~l~~A~~~~Gff~l~nhgi~ 42 (211)
..||++++..+ ...+.++.+.+++.+.-.+.|.|||+=
T Consensus 121 ~~ip~~~~~~~~~~~~~la~~~~~~l~~~~~vll~nHG~~ 160 (209)
T cd00398 121 GDIPCTPYMTPETGEDEIGTQRALGFPNSKAVLLRNHGLF 160 (209)
T ss_pred CCeeecCCcCCCccHHHHHHHHhcCCCcCCEEEEcCCCCe
Confidence 36899999876 455566777777778889999999963
No 47
>PF11243 DUF3045: Protein of unknown function (DUF3045); InterPro: IPR021405 This entry is represented by Bacteriophage T4, Gp30.1; it is a family of uncharacterised viral proteins.
Probab=66.00 E-value=6 Score=25.56 Aligned_cols=22 Identities=23% Similarity=0.626 Sum_probs=18.1
Q ss_pred HHHHHHHHHhcCeEEEEecCCC
Q 028254 21 AKSIRQACIDYGFFYLVNHGVE 42 (211)
Q Consensus 21 ~~~l~~A~~~~Gff~l~nhgi~ 42 (211)
-+.|.+-|.+.||+||..|-+.
T Consensus 35 D~~if~eCVeqGFiYVs~~~~~ 56 (89)
T PF11243_consen 35 DEPIFKECVEQGFIYVSKYWMD 56 (89)
T ss_pred ccHHHHHHHhcceEEEEeeeec
Confidence 3468899999999999887654
No 48
>PRK09553 tauD taurine dioxygenase; Reviewed
Probab=65.31 E-value=13 Score=30.11 Aligned_cols=50 Identities=16% Similarity=0.235 Sum_probs=36.2
Q ss_pred CCeEeCCCcchHHHHHHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHhhcC
Q 028254 7 LPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSL 59 (211)
Q Consensus 7 iP~IDl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~l 59 (211)
|.=||++..-..+..++|.+++.++|++.+.|..++. ++..+.++.|-.+
T Consensus 16 v~g~dl~~~l~~~~~~~l~~~l~~~Gvlvfr~q~l~~---~~~~~~~~~~G~~ 65 (277)
T PRK09553 16 ISGIDLTRPLSDNQFEQLYHALLRHQVLFFRDQPITP---QQQRDLAARFGDL 65 (277)
T ss_pred EeCcccCCcCCHHHHHHHHHHHHHCCEEEECCCCCCH---HHHHHHHHHhCCC
Confidence 4445666543455688899999999999999998875 4555666666554
No 49
>PRK07490 hypothetical protein; Provisional
Probab=65.28 E-value=7.6 Score=31.04 Aligned_cols=36 Identities=17% Similarity=0.073 Sum_probs=27.9
Q ss_pred CCCeE-eCCCcchHHHHHHHHHHHHhcCeEEEEecCC
Q 028254 6 QLPVI-DLSSPDRLSTAKSIRQACIDYGFFYLVNHGV 41 (211)
Q Consensus 6 ~iP~I-Dl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi 41 (211)
.||++ ++..+...+.++.+.+++.+.-.+.|.|||+
T Consensus 133 ~v~~~~~y~~~~~~ela~~v~~~l~~~~avlL~nHG~ 169 (245)
T PRK07490 133 RVAVDTLYGGMALEEEGERLAGLLGDKRRLLMGNHGV 169 (245)
T ss_pred CeeeccCCCCcCcHHHHHHHHHHhCcCCEEEECCCCc
Confidence 36664 5655555567888999999999999999996
No 50
>PRK06661 hypothetical protein; Provisional
Probab=62.16 E-value=9.2 Score=30.27 Aligned_cols=37 Identities=14% Similarity=0.089 Sum_probs=27.7
Q ss_pred CCCeEeCCCcch--HHHHHHHHHHHHhcCeEEEEecCCC
Q 028254 6 QLPVIDLSSPDR--LSTAKSIRQACIDYGFFYLVNHGVE 42 (211)
Q Consensus 6 ~iP~IDl~~~~~--~~~~~~l~~A~~~~Gff~l~nhgi~ 42 (211)
.||..++..... .+..+.+.+++.+...+.|.|||+=
T Consensus 123 ~i~~~~~~~~~~~~~~~~~~~a~~l~~~~avll~nHG~v 161 (231)
T PRK06661 123 RISYHNYNSLALDADKQSSRLVNDLKQNYVMLLRNHGAI 161 (231)
T ss_pred CceecCCCccccCchhHHHHHHHHhCCCCEEEECCCCCe
Confidence 366666654432 4567889999999999999999963
No 51
>PRK05834 hypothetical protein; Provisional
Probab=57.74 E-value=14 Score=28.44 Aligned_cols=36 Identities=17% Similarity=0.210 Sum_probs=25.6
Q ss_pred CCCeEeCCCcch--HHHHHHHHHHHHhcC--eEEEEecCC
Q 028254 6 QLPVIDLSSPDR--LSTAKSIRQACIDYG--FFYLVNHGV 41 (211)
Q Consensus 6 ~iP~IDl~~~~~--~~~~~~l~~A~~~~G--ff~l~nhgi 41 (211)
.||++.+..+.. +..++++.+++.+.. .+.|.|||+
T Consensus 121 ~ipv~~~~~~~~~~~~la~~v~~~l~~~~~~avLL~nHGv 160 (194)
T PRK05834 121 EISIYDPKDFDDWYERADTEILRYLQEKNKNFVVIKGYGV 160 (194)
T ss_pred eeeecCccccchHHHhHHHHHHHHHhhcCCCEEEEcCCcc
Confidence 478877655432 234677888888755 899999995
No 52
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=57.08 E-value=35 Score=27.65 Aligned_cols=44 Identities=18% Similarity=0.375 Sum_probs=33.6
Q ss_pred eEeCCCcchHHHHHHHHHHHHhcCeEEEEec-CCCHHHHHHHHHHHHH
Q 028254 9 VIDLSSPDRLSTAKSIRQACIDYGFFYLVNH-GVEEELISQMFNESKK 55 (211)
Q Consensus 9 ~IDl~~~~~~~~~~~l~~A~~~~Gff~l~nh-gi~~~~~~~~~~~~~~ 55 (211)
+|||+.|+. ..++.+-|.+.|.-.|++. |.+.+.++.+.++++.
T Consensus 73 ~IDFT~P~~---~~~~l~~~~~~~~~lVIGTTGf~~e~~~~l~~~a~~ 117 (266)
T COG0289 73 LIDFTTPEA---TLENLEFALEHGKPLVIGTTGFTEEQLEKLREAAEK 117 (266)
T ss_pred EEECCCchh---hHHHHHHHHHcCCCeEEECCCCCHHHHHHHHHHHhh
Confidence 678877643 4556778888888888876 8998888888887766
No 53
>PRK06754 mtnB methylthioribulose-1-phosphate dehydratase; Reviewed
Probab=56.59 E-value=12 Score=29.01 Aligned_cols=33 Identities=27% Similarity=0.496 Sum_probs=25.5
Q ss_pred CCeEe-CCCcchHHHHHHHHHHHH-hcCeEEEEecCC
Q 028254 7 LPVID-LSSPDRLSTAKSIRQACI-DYGFFYLVNHGV 41 (211)
Q Consensus 7 iP~ID-l~~~~~~~~~~~l~~A~~-~~Gff~l~nhgi 41 (211)
||+++ +. ...+.++.+.++++ +...+.|.|||+
T Consensus 138 vpv~~~~~--~~~eLa~~v~~~l~~~~~avLl~nHG~ 172 (208)
T PRK06754 138 IPIIENHA--DIPTLAEEFAKHIQGDSGAVLIRNHGI 172 (208)
T ss_pred EEEecCCC--CHHHHHHHHHHHhccCCcEEEECCCce
Confidence 77875 32 34567888888887 888999999995
No 54
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=50.46 E-value=24 Score=24.76 Aligned_cols=44 Identities=23% Similarity=0.380 Sum_probs=29.3
Q ss_pred eEeCCCcchHHHHHHHHHHHHhcCeEEEEec-CCCHHHHHHHHHHHHH
Q 028254 9 VIDLSSPDRLSTAKSIRQACIDYGFFYLVNH-GVEEELISQMFNESKK 55 (211)
Q Consensus 9 ~IDl~~~~~~~~~~~l~~A~~~~Gff~l~nh-gi~~~~~~~~~~~~~~ 55 (211)
+||++.+ +.+....+.|.+.|.=.|++. |.+.+.++.+.++++.
T Consensus 71 vIDfT~p---~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~~ 115 (124)
T PF01113_consen 71 VIDFTNP---DAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEELAKK 115 (124)
T ss_dssp EEEES-H---HHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHHHTTT
T ss_pred EEEcCCh---HHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHHhcc
Confidence 6777754 335556677777799999876 8988877777766543
No 55
>TIGR02410 carnitine_TMLD trimethyllysine dioxygenase. Members of this family with known function act as trimethyllysine dioxygenase, an enzyme in the pathway for carnitine biosynthesis from lysine. This enzyme is homologous to gamma-butyrobetaine,2-oxoglutarate dioxygenase, which catalyzes the last step in carnitine biosynthesis. Members of this family appear to be eukaryotic only.
Probab=50.42 E-value=26 Score=29.66 Aligned_cols=49 Identities=24% Similarity=0.312 Sum_probs=34.7
Q ss_pred CCCeEeCCCc-c-hHHHHHHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHhh
Q 028254 6 QLPVIDLSSP-D-RLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFF 57 (211)
Q Consensus 6 ~iP~IDl~~~-~-~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF 57 (211)
.+|.+|+.+. . ..+.+.++.+++.++|++.+.|-+++.+.+ .+.+++|-
T Consensus 100 ~~~~~~~~~~~~~~d~~l~~~l~~l~~~G~v~~~g~~~~~~~~---~~~a~riG 150 (362)
T TIGR02410 100 KDPSVHFKTTYDHTDSTLKSFSKNIYKYGFTFVDNVPVTPEAT---EKLCERIS 150 (362)
T ss_pred cCCceeHHHHhccCHHHHHHHHHHHHhhCEEEEcCCCCCHHHH---HHHHHHhc
Confidence 3577777532 2 245688999999999999999999876544 44455553
No 56
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=50.31 E-value=25 Score=28.85 Aligned_cols=29 Identities=21% Similarity=0.354 Sum_probs=23.4
Q ss_pred HHHHHHhcCeEEEEecCCCHHHHHHHHHHHH
Q 028254 24 IRQACIDYGFFYLVNHGVEEELISQMFNESK 54 (211)
Q Consensus 24 l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~ 54 (211)
..+++++.|||.|.| +|..++..+.+...
T Consensus 17 Al~~lED~Gy~cvDN--lP~~Ll~~l~~~~~ 45 (284)
T PF03668_consen 17 ALRALEDLGYYCVDN--LPPSLLPQLIELLA 45 (284)
T ss_pred HHHHHHhcCeeEEcC--CcHHHHHHHHHHHH
Confidence 358999999999999 67788887776654
No 57
>PF10055 DUF2292: Uncharacterized small protein (DUF2292); InterPro: IPR018743 Members of this family of hypothetical bacterial proteins have no known function.
Probab=49.99 E-value=11 Score=20.90 Aligned_cols=13 Identities=38% Similarity=0.836 Sum_probs=11.2
Q ss_pred cccCcceeEecCC
Q 028254 190 SDYGMITLLATDG 202 (211)
Q Consensus 190 tD~g~lTiL~qd~ 202 (211)
-.||++||..||+
T Consensus 13 i~yGsV~iiiqdG 25 (38)
T PF10055_consen 13 IRYGSVTIIIQDG 25 (38)
T ss_pred CCcceEEEEEECC
Confidence 4689999999986
No 58
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=47.33 E-value=51 Score=25.94 Aligned_cols=40 Identities=20% Similarity=0.429 Sum_probs=30.3
Q ss_pred cchHHHHHHHHHHHHhcCeEEEEec-CCCHHHHHHHHHHHHH
Q 028254 15 PDRLSTAKSIRQACIDYGFFYLVNH-GVEEELISQMFNESKK 55 (211)
Q Consensus 15 ~~~~~~~~~l~~A~~~~Gff~l~nh-gi~~~~~~~~~~~~~~ 55 (211)
....++.+.+.+||.+.|| +|.-. ||+.+-.+++++.+.+
T Consensus 160 l~~leE~~avA~aca~~g~-~lEPTGGIdl~Nf~~I~~i~ld 200 (236)
T TIGR03581 160 LKHLEEYAAVAKACAKHGF-YLEPTGGIDLDNFEEIVQIALD 200 (236)
T ss_pred cccHHHHHHHHHHHHHcCC-ccCCCCCccHHhHHHHHHHHHH
Confidence 3456778899999999998 56655 6998877777766543
No 59
>PRK08193 araD L-ribulose-5-phosphate 4-epimerase; Reviewed
Probab=46.98 E-value=32 Score=27.20 Aligned_cols=37 Identities=16% Similarity=0.096 Sum_probs=25.6
Q ss_pred CCCeEeCCCc------chHHHHHHHHHHHHhc-------CeEEEEecCCC
Q 028254 6 QLPVIDLSSP------DRLSTAKSIRQACIDY-------GFFYLVNHGVE 42 (211)
Q Consensus 6 ~iP~IDl~~~------~~~~~~~~l~~A~~~~-------Gff~l~nhgi~ 42 (211)
.||++++..+ ...+..+.+.+++++. ..+.|.|||+-
T Consensus 124 ~ip~~~~~~~~~~~~~~~~~~~~~ia~~l~~~~~~~~~~~avLl~nHG~v 173 (231)
T PRK08193 124 DIPCTRKMTDEEINGEYEWETGKVIVETFEKRGIDPAAVPGVLVHSHGPF 173 (231)
T ss_pred CcceecCCCcccccccchhhHHHHHHHHHhhccCCcccCCEEEEcCCCce
Confidence 5888876532 1234577788888764 47899999964
No 60
>PRK09220 methylthioribulose-1-phosphate dehydratase; Provisional
Probab=46.55 E-value=27 Score=26.98 Aligned_cols=35 Identities=17% Similarity=0.212 Sum_probs=24.2
Q ss_pred CCCeEeCCCcchHHHHHHHHHHHHhcC---eEEEEecCC
Q 028254 6 QLPVIDLSSPDRLSTAKSIRQACIDYG---FFYLVNHGV 41 (211)
Q Consensus 6 ~iP~IDl~~~~~~~~~~~l~~A~~~~G---ff~l~nhgi 41 (211)
.||++.- .++.++.++.+.+++.+.. .+.|.|||+
T Consensus 134 ~vp~~~~-~~~~~eLa~~v~~~l~~~~~~~avlL~nHGv 171 (204)
T PRK09220 134 VVPIFDN-DQDIARLAARVAPYLDAQPLRYGYLIRGHGL 171 (204)
T ss_pred EEeeecC-CCCHHHHHHHHHHHHHhCCCCcEEEECCCce
Confidence 3455432 2234567888899998864 899999995
No 61
>PRK07044 aldolase II superfamily protein; Provisional
Probab=46.40 E-value=27 Score=27.99 Aligned_cols=37 Identities=22% Similarity=0.205 Sum_probs=27.2
Q ss_pred CCCeEeCCCcc-hHHHHHHHHHHHHhcCeEEEEecCCC
Q 028254 6 QLPVIDLSSPD-RLSTAKSIRQACIDYGFFYLVNHGVE 42 (211)
Q Consensus 6 ~iP~IDl~~~~-~~~~~~~l~~A~~~~Gff~l~nhgi~ 42 (211)
.||++++..+. ..+..+.+.+++.+...+.|.|||+=
T Consensus 138 ~i~~~~y~~~~~~~e~~~~va~~l~~~~avLL~nHGvi 175 (252)
T PRK07044 138 RLAYHDYEGIALDLDEGERLVADLGDKPAMLLRNHGLL 175 (252)
T ss_pred CceeeCCCCCcCCHHHHHHHHHHhccCCEEEECCCCce
Confidence 47777775332 34456788888888899999999963
No 62
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=45.43 E-value=8.2 Score=25.69 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=17.4
Q ss_pred ceeccCCCCCCCCCCCcccccccccc-----CcceeEec
Q 028254 167 LRLLHYPGELVSSNQEVCGASAHSDY-----GMITLLAT 200 (211)
Q Consensus 167 lr~~~Yp~~~~~~~~~~~~~~~HtD~-----g~lTiL~q 200 (211)
+++++|++- -.+.+|+|. ..+|+|+.
T Consensus 1 ~~~~~y~~G--------~~~~~H~D~~~~~~~~~t~lly 31 (100)
T PF13640_consen 1 MQLNRYPPG--------GFFGPHTDNSYDPHRRVTLLLY 31 (100)
T ss_dssp -EEEEEETT--------EEEEEEESSSCCCSEEEEEEEE
T ss_pred CEEEEECcC--------CEEeeeECCCCCCcceEEEEEE
Confidence 467777531 257799998 68888843
No 63
>PF01471 PG_binding_1: Putative peptidoglycan binding domain; InterPro: IPR002477 This entry represents peptidoglycan binding domain (PGBD), as well as related domains that share the same structure. PGBD may have a general peptidoglycan binding function, has a core structure consisting of a closed, three-helical bundle with a left-handed twist. It is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation [, , ]. Examples are: Muramoyl-pentapeptide carboxypeptidase (3.4.17.8 from EC) N-acetylmuramoyl-L-alanine amidase cwlA precursor (cell wall hydrolase, autolysin, 3.5.1.28 from EC) Autolytic lysozyme (1,4-beta-N-acetylmuramidase, autolysin, 3.2.1.17 from EC) Membrane-bound lytic murein transglycosylase B Zinc-containing D-alanyl-D-alanine-cleaving carboxypeptidase, VanX []. Many of the proteins having this domain are as yet uncharacterised. However, some are known to belong to MEROPS peptidase family M15 (clan MD), subfamily M15A metallopeptidases. A number of the proteins belonging to subfamily M15A are non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. Eukaryotic enzymes can contain structurally similar PGBD-like domains. Matrix metalloproteinases (MMP), which catalyse extracellular matrix degradation, have N-terminal domains that resemble PGBD. Examples are gelatinase A (MMP-2), which degrades type IV collagen [], stromelysin-1 (MMP-3), which plays a role in arthritis and tumour invasion [, ], and gelatinase B (MMP-9) secreted by neutrophils as part of the innate immune defence mechanism []. Several MMPs are implicated in cancer progression, since degradation of the extracellular matrix is an essential step in the cascade of metastasis [].; GO: 0008152 metabolic process; PDB: 1L6J_A 3BKH_A 3BKV_A 1GXD_A 1EAK_D 1CK7_A 1SLM_A 1LBU_A 1SU3_B.
Probab=42.06 E-value=36 Score=19.98 Aligned_cols=42 Identities=14% Similarity=0.142 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHhhcCC
Q 028254 19 STAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQ 60 (211)
Q Consensus 19 ~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp 60 (211)
+.+..|...+...||......|+-...+.++...-+..+.|+
T Consensus 3 ~~v~~lq~~L~~~gy~~~~~~g~~~~~t~~Av~~fQ~~~gL~ 44 (57)
T PF01471_consen 3 PDVKALQQYLNRLGYYPGPVDGIFDPETREAVKAFQKANGLP 44 (57)
T ss_dssp HHHHHHHHHHHHTTTT-SSTTSBSHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCcCHHHHHHHHHHHHHcCcC
Confidence 346788899999999854445665666666666667777665
No 64
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=40.32 E-value=60 Score=26.54 Aligned_cols=39 Identities=15% Similarity=0.284 Sum_probs=27.1
Q ss_pred CeEeCCCcchHHHHHHHHHHHHhcCeEEEEec-CCCHHHHHHH
Q 028254 8 PVIDLSSPDRLSTAKSIRQACIDYGFFYLVNH-GVEEELISQM 49 (211)
Q Consensus 8 P~IDl~~~~~~~~~~~l~~A~~~~Gff~l~nh-gi~~~~~~~~ 49 (211)
-+|||+.|+. +.+..+.|.+.|.-.|++. |.+.+.++++
T Consensus 72 VvIDFT~P~~---~~~n~~~~~~~gv~~ViGTTG~~~~~~~~l 111 (275)
T TIGR02130 72 ICIDYTHPSA---VNDNAAFYGKHGIPFVMGTTGGDREALAKL 111 (275)
T ss_pred EEEECCChHH---HHHHHHHHHHCCCCEEEcCCCCCHHHHHHH
Confidence 3589987643 4455677888888888776 7777665554
No 65
>PRK06486 hypothetical protein; Provisional
Probab=40.30 E-value=33 Score=27.71 Aligned_cols=37 Identities=24% Similarity=0.285 Sum_probs=26.2
Q ss_pred CCCeEe-CCC-cchHHHHHHHHHHHHhcCeEEEEecCCC
Q 028254 6 QLPVID-LSS-PDRLSTAKSIRQACIDYGFFYLVNHGVE 42 (211)
Q Consensus 6 ~iP~ID-l~~-~~~~~~~~~l~~A~~~~Gff~l~nhgi~ 42 (211)
.||++. +.. ....+.++.+.+++.+...+.|.|||+=
T Consensus 148 ~i~~~~~~~~~~~s~ela~~va~al~~~~avLL~nHG~v 186 (262)
T PRK06486 148 RTAVDEDYNGLALDAAEGDRIARAMGDADIVFLKNHGVM 186 (262)
T ss_pred CeeeccCCCCccCchhHHHHHHHHhCcCCEEEECCCCCe
Confidence 355554 321 2235668889999999999999999963
No 66
>cd00379 Ribosomal_L10_P0 Ribosomal protein L10 family; composed of the large subunit ribosomal protein called L10 in bacteria, P0 in eukaryotes, and L10e in archaea, as well as uncharacterized P0-like eukaryotic proteins. In all three kingdoms, L10 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been sho
Probab=37.41 E-value=1.4e+02 Score=21.60 Aligned_cols=38 Identities=11% Similarity=0.223 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhcCeEEEEec-CCCHHHHHHHHHHHHH
Q 028254 18 LSTAKSIRQACIDYGFFYLVNH-GVEEELISQMFNESKK 55 (211)
Q Consensus 18 ~~~~~~l~~A~~~~Gff~l~nh-gi~~~~~~~~~~~~~~ 55 (211)
...++++.+.++++.++++.++ |++...+.++....+.
T Consensus 4 ~~~v~~l~~~l~~~~~v~v~~~~~l~~~~~~~lR~~l~~ 42 (155)
T cd00379 4 EELVEELKELLKKYKSVVVVDYRGLTVAQLTELRKELRE 42 (155)
T ss_pred HHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHH
Confidence 3458899999999998888876 8988777776665543
No 67
>PF11548 Receptor_IA-2: Protein-tyrosine phosphatase receptor IA-2; InterPro: IPR021613 IA-2 is a protein-tyrosine phosphatase receptor that upon exocytosis, the cytoplasmic domain is cleaved and moves to the nucleus where it enhances transcription of the insulin gene. The mature exodomain of IA-2 participates in adhesion to the extracellular matrix and is self-proteolyzed in vitro by reactive oxygen species which may be a new shedding mechanism. ; PDB: 2QT7_B 3N01_B 3N4W_B 3NG8_A.
Probab=35.84 E-value=30 Score=23.18 Aligned_cols=34 Identities=26% Similarity=0.424 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHcCCChhhhhcccccCCCcccceec
Q 028254 136 GRRLIHLIALALNLNEDFFEKVGALDAPMAFLRLL 170 (211)
Q Consensus 136 ~~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~lr~~ 170 (211)
+.+|++.+++.|+|+...|.+. ....+.-++|+-
T Consensus 19 G~~l~~~la~~l~l~s~~F~~i-~V~g~avTFrv~ 52 (91)
T PF11548_consen 19 GSRLMEKLAELLHLPSSSFINI-SVVGPAVTFRVR 52 (91)
T ss_dssp HHHHHHHHHHHHTS-GGGEEEE-EEETTEEEEEE-
T ss_pred HHHHHHHHHHHhCCCcccceee-eecCceEEEEec
Confidence 6789999999999999999862 233444445544
No 68
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=35.28 E-value=74 Score=23.59 Aligned_cols=51 Identities=20% Similarity=0.086 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHcCCChhhhhcccccCCCcccceeccCCCCCCCCCCCccccccccccC--------cceeEec
Q 028254 135 AGRRLIHLIALALNLNEDFFEKVGALDAPMAFLRLLHYPGELVSSNQEVCGASAHSDYG--------MITLLAT 200 (211)
Q Consensus 135 l~~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~lr~~~Yp~~~~~~~~~~~~~~~HtD~g--------~lTiL~q 200 (211)
+...|.+.++..++++.. .......+++++|.+- -...+|.|.. .+|+++.
T Consensus 60 ~~~~l~~~i~~~~~~~~~-------~~~~~~~~~~~~Y~~g--------~~~~~H~D~~~~~~~~~r~~T~~~y 118 (178)
T smart00702 60 VIERIRQRLADFLGLLRG-------LPLSAEDAQVARYGPG--------GHYGPHVDNFEDDENGDRIATFLLY 118 (178)
T ss_pred HHHHHHHHHHHHHCCCch-------hhccCcceEEEEECCC--------CcccCcCCCCCCCCCCCeEEEEEEE
Confidence 445555666666666421 1122345889999752 1356899966 6888875
No 69
>PF07283 TrbH: Conjugal transfer protein TrbH; InterPro: IPR010837 This entry represents TrbH, a bacterial conjugal transfer protein approximately 150 residues long. TrbH contains a putative membrane lipoprotein lipid attachment site [].
Probab=35.19 E-value=51 Score=23.38 Aligned_cols=34 Identities=12% Similarity=0.194 Sum_probs=24.8
Q ss_pred eEeCCCcchHHHHHHHHHHHHhcCeEEEEecCCC
Q 028254 9 VIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVE 42 (211)
Q Consensus 9 ~IDl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~ 42 (211)
+|.|...+.......|.++++.|||-.+.++.-.
T Consensus 26 t~~L~q~~~d~Fg~aL~~~LR~~GYaV~e~~~~~ 59 (121)
T PF07283_consen 26 TFELKQKDPDPFGQALENALRAKGYAVIEDDPPD 59 (121)
T ss_pred EEEEEcCCCChHHHHHHHHHHhcCcEEEecCCcc
Confidence 4444333344667889999999999999888654
No 70
>PF02668 TauD: Taurine catabolism dioxygenase TauD, TfdA family; InterPro: IPR003819 This family consists of TauD/TfdA taurine catabolism dioxygenases. The Escherichia coli tauD gene is required for the utilization of taurine (2-aminoethanesulphonic acid) as a sulphur source and is expressed only under conditions of sulphate starvation. TauD is an alpha-ketoglutarate-dependent dioxygenase catalyzing the oxygenolytic release of sulphite from taurine []. The 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate dioxygenase from Burkholderia sp. (strain RASC) also belongs to this family []. TfdA from Ralstonia eutropha (Alcaligenes eutrophus) is a 2,4-D monooxygenase [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3SWT_B 3R1J_A 1GVG_A 1DRT_A 1DS1_A 1DS0_A 1DRY_A 3V15_A 3PVJ_D 3V17_A ....
Probab=34.61 E-value=79 Score=24.68 Aligned_cols=35 Identities=20% Similarity=0.376 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHh
Q 028254 19 STAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKF 56 (211)
Q Consensus 19 ~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~f 56 (211)
+..++|.+++.+.||+.|.+-.++.+.+ .+.++.|
T Consensus 24 ~~~~~~~~~l~~~G~vvlrg~~~~~~~~---~~~~~~~ 58 (258)
T PF02668_consen 24 EELEELREALAEYGFVVLRGFPLDPEQF---EALASRL 58 (258)
T ss_dssp CHHHHHHHHHHHHSEEEEESCTSSHHHH---HHHHHHH
T ss_pred HHHHHHHHHHhcccEEEEcCCCCCHHHH---HHHHHhh
Confidence 3688999999999999999888755433 3444444
No 71
>PF11043 DUF2856: Protein of unknown function (DUF2856); InterPro: IPR020500 This phage protein modulates the activity of the host recBCD nuclease and thus protects the linear double stranded DNA from exonuclease degradation [].
Probab=34.02 E-value=65 Score=20.92 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHhh
Q 028254 43 EELISQMFNESKKFFSLQLEDKMK 66 (211)
Q Consensus 43 ~~~~~~~~~~~~~fF~lp~e~K~~ 66 (211)
.++++.+...-..|.+||.|.|..
T Consensus 20 sEVL~~~k~N~D~~~aL~~ETKaE 43 (97)
T PF11043_consen 20 SEVLDNIKNNYDAFMALPPETKAE 43 (97)
T ss_pred HHHHHHHHHHHHHHHcCChhhHHH
Confidence 466777777888899999998875
No 72
>TIGR00760 araD L-ribulose-5-phosphate 4-epimerase. The homolog to this family from Mycobacterium smegmatis is flanked by putative araB and araA genes, consistent with it also being araD.
Probab=33.44 E-value=61 Score=25.58 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=23.6
Q ss_pred CCCeEeCCC------cchHHHHHHHHHHHHhc-------CeEEEEecCC
Q 028254 6 QLPVIDLSS------PDRLSTAKSIRQACIDY-------GFFYLVNHGV 41 (211)
Q Consensus 6 ~iP~IDl~~------~~~~~~~~~l~~A~~~~-------Gff~l~nhgi 41 (211)
.||++.+.. +...+..+.|.+++.+. -.+.|.|||+
T Consensus 125 ~ip~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~avlL~nHGv 173 (231)
T TIGR00760 125 TIPCTRPMTDEEINGEYELETGKVIVETFEKRGIDPAQIPGVLVHSHGP 173 (231)
T ss_pred ceeeecCCCcccccccchHhHHHHHHHHHhhccCCcccCCEEEEcCCCc
Confidence 477765431 11234577788888775 4789999995
No 73
>PLN02452 phosphoserine transaminase
Probab=32.26 E-value=95 Score=26.40 Aligned_cols=49 Identities=12% Similarity=0.136 Sum_probs=36.8
Q ss_pred CCeEeCCCcchHHHHHHHHHHHHhcCeEEEEecC------------CCHHHHHHHHHHHHHh
Q 028254 7 LPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHG------------VEEELISQMFNESKKF 56 (211)
Q Consensus 7 iP~IDl~~~~~~~~~~~l~~A~~~~Gff~l~nhg------------i~~~~~~~~~~~~~~f 56 (211)
.++|.|.-++. +..+++.+.+++.||+.+.+|. ++.+-++++.+.+++|
T Consensus 300 ~~~vsF~~~~~-~~~~~f~~~~~~~g~~~~~G~r~~gg~R~s~yna~~~~~v~~L~~~m~~f 360 (365)
T PLN02452 300 LMNVPFTLGGS-ELEAEFVKEAAKAGMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDF 360 (365)
T ss_pred CeEEEEEcCCc-hhHHHHHHHHHHCCCcccCCccccCceEEECcCCCCHHHHHHHHHHHHHH
Confidence 34555543333 3677899999999999999884 4578888888888887
No 74
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers. The enzyme is part of a plasmid-encoded pathway, which enables bacteria harbouring the plasmid to use various aromatic hydrocarbons as their sole sources of carbon and energy. The enzyme is a barrel-shaped hexamer, which can be viewed as a trimer of dimers. The hexamer contains a hydrophobic core formed by three beta-sheets and surrounded by three pairs of alpha-helices. Each 4-OT monomer of 62 amino acids has a relatively simple beta-alpha-beta fold as described by the structure of the enzyme from Pseudomonas putida []. The monomer begins with a conserved proline at the start of a beta-strand, followed by an alpha-helix and a 310 helix preceding a second parallel beta-strand, and ends with a beta-hairpin near the C terminus. The dimer results from antiparallel interactions between the beta-sheets and alpha-helices of the two monomers, forming a four-stranded beta-sheet with antiparallel alpha-helices on one side, creating two active sites, one at each end of the beta-sheet. Three dimers further associate to form a hexamer by the interactions of the strands of the C-terminal beta-hairpin loops with the edges of the four-stranded beta-sheets of neighbouring dimers, creating a series of cross-links that stabilise the hexamer Pro-1 of the mature protein functions as the general base while Arg-39 and an ordered water molecule each provide a hydrogen bond to the C-2 oxygen of substrate. Arg-39 plays an additional role in the binding of the C-1 carboxylate group. Arg-11 participates both in substrate binding and in catalysis. It interacts with the C-6 carboxylate group, thereby holding the substrate in place and drawing electron density to the C-5 position. The hydrophobic nature of the active site, which lowers the pKa of Pro-1 and provides a favourable environment for catalysis, is largely maintained by Phe-50. Because several Arg residues located near the active site are not conserved among all members of this family and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.; GO: 0016853 isomerase activity, 0006725 cellular aromatic compound metabolic process; PDB: 4OTA_H 4OTC_G 4OTB_J 2FM7_A 1BJP_B 1S0Y_K 3EJ9_E 3EJ7_K 3EJ3_I 3MB2_A ....
Probab=32.03 E-value=75 Score=18.80 Aligned_cols=26 Identities=4% Similarity=0.092 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhhhh
Q 028254 130 QKVLSAGRRLIHLIALALNLNEDFFE 155 (211)
Q Consensus 130 ~~~~~l~~~ll~~la~~Lgl~~~~~~ 155 (211)
..-.+++..|..++++.||.+++...
T Consensus 14 e~K~~l~~~it~~~~~~lg~~~~~i~ 39 (60)
T PF01361_consen 14 EQKRELAEAITDAVVEVLGIPPERIS 39 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHTS-GGGEE
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCeEE
Confidence 34568888899999999999887543
No 75
>PRK08324 short chain dehydrogenase; Validated
Probab=31.85 E-value=1.6e+02 Score=27.37 Aligned_cols=51 Identities=16% Similarity=0.216 Sum_probs=34.1
Q ss_pred CCCeEeCCCcchHHHHHHHHHHHHhcC---eEEEEecCCCH---------HHHHHHHHHHHHhh
Q 028254 6 QLPVIDLSSPDRLSTAKSIRQACIDYG---FFYLVNHGVEE---------ELISQMFNESKKFF 57 (211)
Q Consensus 6 ~iP~IDl~~~~~~~~~~~l~~A~~~~G---ff~l~nhgi~~---------~~~~~~~~~~~~fF 57 (211)
.||+++|..+. .+.++++.++++..+ .+.|.|||+=. ..+..+.+.++.++
T Consensus 155 ~v~~~py~~pg-~~l~~~~~~~~~~~~~~~~~lL~nHG~~~~G~~~~eA~~~~~~~e~~a~~~~ 217 (681)
T PRK08324 155 RVGWVPYVRPG-FDLALAIAEAVRANPGAEGVVLGKHGLFTWGDTAKEAYERTIEIITRAEEYI 217 (681)
T ss_pred ceEEcCccCCC-hHHHHHHHHHHHhCCCCcEEEECCCCCeeccCCHHHHHHHHHHHHHHHHHHH
Confidence 47888887765 345567777777654 89999999641 23445555666665
No 76
>PRK13883 conjugal transfer protein TrbH; Provisional
Probab=31.79 E-value=82 Score=23.27 Aligned_cols=34 Identities=18% Similarity=0.229 Sum_probs=24.0
Q ss_pred eEeCCCcchHHHHHHHHHHHHhcCeEEEEecCCC
Q 028254 9 VIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVE 42 (211)
Q Consensus 9 ~IDl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~ 42 (211)
+|.|...........|.++++.|||-.+.+...+
T Consensus 54 t~~l~q~~~D~Fg~aL~~aLR~~GYaV~e~~~~~ 87 (151)
T PRK13883 54 RFELQQPTPDAFGQALVKALRDKGYALLEYNPAG 87 (151)
T ss_pred EEEEecCCCcHHHHHHHHHHHHcCeEEEecCCcc
Confidence 4455433334667889999999999999866543
No 77
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=31.46 E-value=74 Score=19.19 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhhh
Q 028254 130 QKVLSAGRRLIHLIALALNLNEDFF 154 (211)
Q Consensus 130 ~~~~~l~~~ll~~la~~Lgl~~~~~ 154 (211)
..-.++...|.++++..||.+++..
T Consensus 15 eqk~~l~~~it~~l~~~lg~p~~~v 39 (64)
T PRK01964 15 EKIKNLIREVTEAISATLDVPKERV 39 (64)
T ss_pred HHHHHHHHHHHHHHHHHhCcChhhE
Confidence 3456788889999999999997744
No 78
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=30.91 E-value=23 Score=18.12 Aligned_cols=17 Identities=29% Similarity=0.604 Sum_probs=11.7
Q ss_pred EEEEecCCCHHHHHHHH
Q 028254 34 FYLVNHGVEEELISQMF 50 (211)
Q Consensus 34 f~l~nhgi~~~~~~~~~ 50 (211)
.||..||++.+.+.+-+
T Consensus 9 rYV~eh~ls~ee~~~RL 25 (28)
T PF12368_consen 9 RYVKEHGLSEEEVAERL 25 (28)
T ss_pred hhHHhcCCCHHHHHHHH
Confidence 37788999887655433
No 79
>cd05797 Ribosomal_L10 Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10. L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-in
Probab=30.50 E-value=2e+02 Score=20.90 Aligned_cols=38 Identities=5% Similarity=0.125 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhcCeEEEEec-CCCHHHHHHHHHHHHH
Q 028254 18 LSTAKSIRQACIDYGFFYLVNH-GVEEELISQMFNESKK 55 (211)
Q Consensus 18 ~~~~~~l~~A~~~~Gff~l~nh-gi~~~~~~~~~~~~~~ 55 (211)
...+++|.+.+++..++++.++ |++...+.++....+.
T Consensus 6 ~~~v~~l~~~l~~~~~v~v~~~~gl~~~~~~~lR~~lr~ 44 (157)
T cd05797 6 EEIVAELKEKLKEAKSVVVADYRGLTVAQLTELRKELRE 44 (157)
T ss_pred HHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHH
Confidence 3458889999999988887776 8998877777766553
No 80
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....
Probab=29.62 E-value=15 Score=21.32 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHcCCChhh
Q 028254 134 SAGRRLIHLIALALNLNEDF 153 (211)
Q Consensus 134 ~l~~~ll~~la~~Lgl~~~~ 153 (211)
......+..|+..||++.++
T Consensus 35 ~~~~~~~~~ia~~l~~~~~~ 54 (55)
T PF01381_consen 35 NPSLDTLKKIAKALGVSPEY 54 (55)
T ss_dssp TSBHHHHHHHHHHHTSEHHH
T ss_pred CCCHHHHHHHHHHHCCCHHH
Confidence 34444555566666665544
No 81
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=29.47 E-value=86 Score=19.14 Aligned_cols=38 Identities=26% Similarity=0.416 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhcC--eEEEE------ecCCCHHHHHHHHHHHHH
Q 028254 18 LSTAKSIRQACIDYG--FFYLV------NHGVEEELISQMFNESKK 55 (211)
Q Consensus 18 ~~~~~~l~~A~~~~G--ff~l~------nhgi~~~~~~~~~~~~~~ 55 (211)
.+..+.|.+.++++| .+.++ -+||+.+.++.+++..++
T Consensus 23 ~~~l~~la~ia~~yg~~~irlT~~Q~l~l~~v~~~~~~~i~~~L~~ 68 (69)
T PF03460_consen 23 AEQLRALAEIAEKYGDGEIRLTTRQNLQLRGVPEENLPAIFEELKE 68 (69)
T ss_dssp HHHHHHHHHHHHHHSTSEEEEETTSCEEEEEEEGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCeEEECCCCeEEEeCCCHHHHHHHHHHHHc
Confidence 445777888888877 66655 356888777777766543
No 82
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=29.17 E-value=83 Score=25.65 Aligned_cols=27 Identities=15% Similarity=0.354 Sum_probs=21.0
Q ss_pred HHHHHhcCeEEEEecCCCHHHHHHHHHHH
Q 028254 25 RQACIDYGFFYLVNHGVEEELISQMFNES 53 (211)
Q Consensus 25 ~~A~~~~Gff~l~nhgi~~~~~~~~~~~~ 53 (211)
.+++++.|||.+.| +|++++.++.+.+
T Consensus 18 l~~lEDlGyycvDN--LPp~Llp~~~~~~ 44 (286)
T COG1660 18 LRVLEDLGYYCVDN--LPPQLLPKLADLM 44 (286)
T ss_pred HHHHHhcCeeeecC--CCHHHHHHHHHHH
Confidence 46889999999998 6677777766643
No 83
>PF08823 PG_binding_2: Putative peptidoglycan binding domain; InterPro: IPR014927 This entry may be a peptidoglycan binding domain.
Probab=29.13 E-value=97 Score=19.79 Aligned_cols=34 Identities=18% Similarity=0.272 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhcCeEEEEecCCCHHHHHHHHH
Q 028254 18 LSTAKSIRQACIDYGFFYLVNHGVEEELISQMFN 51 (211)
Q Consensus 18 ~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~ 51 (211)
.+.++.|..+++..||..=..||.-.+..++++.
T Consensus 15 ~~~~~evq~~L~~lGyy~g~~~g~~d~a~~~Al~ 48 (74)
T PF08823_consen 15 GDVAREVQEALKRLGYYKGEADGVWDEATEDALR 48 (74)
T ss_pred HHHHHHHHHHHHHcCCccCCCCCcccHHHHHHHH
Confidence 5678999999999999777777766554444444
No 84
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=29.08 E-value=87 Score=18.53 Aligned_cols=25 Identities=0% Similarity=0.049 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhhh
Q 028254 130 QKVLSAGRRLIHLIALALNLNEDFF 154 (211)
Q Consensus 130 ~~~~~l~~~ll~~la~~Lgl~~~~~ 154 (211)
+.-.+++..|.+.++..+|++++..
T Consensus 15 eqk~~l~~~it~~l~~~~~~p~~~v 39 (61)
T PRK02220 15 EQLKALVKDVTAAVSKNTGAPAEHI 39 (61)
T ss_pred HHHHHHHHHHHHHHHHHhCcChhhE
Confidence 3456888889999999999987644
No 85
>TIGR01573 cas2 CRISPR-associated endoribonuclease Cas2. This model describes most members of the family of Cas2, one of the first four protein families found to mark prokaryotic genomes that contain multiple CRISPR elements. It is an endoribonuclease, capable of cleaving single-stranded RNA. CRISPR is an acronym for Clustered Regularly Interspaced Short Palindromic Repeats. The cas genes are found near the repeats. A distinct branch of the Cas2 family shows a very low level of sequence identity and is modeled by TIGR01873 instead.
Probab=28.88 E-value=64 Score=21.56 Aligned_cols=49 Identities=16% Similarity=0.367 Sum_probs=31.8
Q ss_pred eEeCCCcchHHHHHHHHHHHHhcCeEEEEec---C-CCHHHHH-HHHHHHHHhh
Q 028254 9 VIDLSSPDRLSTAKSIRQACIDYGFFYLVNH---G-VEEELIS-QMFNESKKFF 57 (211)
Q Consensus 9 ~IDl~~~~~~~~~~~l~~A~~~~Gff~l~nh---g-i~~~~~~-~~~~~~~~fF 57 (211)
+-|+++....+...++.+.|+.+||..+-.. | ++..... .+.+..+..-
T Consensus 6 ~YDI~~~~~~k~r~kv~k~L~~~G~~rvQ~SVf~~~~~~~~~~~~l~~~l~~~i 59 (95)
T TIGR01573 6 VYDIPTDGERKRRRKLRKLLEKYGLQRVQYSVFEGILEPNQLARKLIERLKRII 59 (95)
T ss_pred EEECCCCchHHHHHHHHHHHHHcchhheeccEEEEEcCHHHHHHHHHHHHHHhC
Confidence 3466644324557899999999998887654 2 5555555 5666655543
No 86
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=28.57 E-value=74 Score=19.05 Aligned_cols=26 Identities=4% Similarity=0.119 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhhhh
Q 028254 130 QKVLSAGRRLIHLIALALNLNEDFFE 155 (211)
Q Consensus 130 ~~~~~l~~~ll~~la~~Lgl~~~~~~ 155 (211)
+.-.+|+..|.+++++.+|.|++.+.
T Consensus 15 EqK~~L~~~it~a~~~~~~~p~~~v~ 40 (60)
T PRK02289 15 EQKNALAREVTEVVSRIAKAPKEAIH 40 (60)
T ss_pred HHHHHHHHHHHHHHHHHhCcCcceEE
Confidence 34568889999999999999876543
No 87
>COG1402 Uncharacterized protein, putative amidase [General function prediction only]
Probab=28.54 E-value=2e+02 Score=23.20 Aligned_cols=40 Identities=18% Similarity=0.306 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhcCe--EEEE-ecCCCHHHHHHHHHHHHHhh
Q 028254 18 LSTAKSIRQACIDYGF--FYLV-NHGVEEELISQMFNESKKFF 57 (211)
Q Consensus 18 ~~~~~~l~~A~~~~Gf--f~l~-nhgi~~~~~~~~~~~~~~fF 57 (211)
......+.+++..+|| |+++ .||=....+..+.+..+.-|
T Consensus 89 ~~~~~~~~~Sl~~~Gfrk~v~vNgHGGN~~~l~~v~~el~~~~ 131 (250)
T COG1402 89 IALLVELVESLARHGFRKFVIVNGHGGNSAALEIVARELRAEL 131 (250)
T ss_pred HHHHHHHHHHHHhcCccEEEEEecCCCcHHHHHHHHHHHHHhc
Confidence 3457788899999999 5554 57755555555555444443
No 88
>PLN02775 Probable dihydrodipicolinate reductase
Probab=28.36 E-value=1.4e+02 Score=24.53 Aligned_cols=37 Identities=16% Similarity=0.332 Sum_probs=26.6
Q ss_pred CeEeCCCcchHHHHHHHHHHHHhcCeEEEEec-CCCHHHHH
Q 028254 8 PVIDLSSPDRLSTAKSIRQACIDYGFFYLVNH-GVEEELIS 47 (211)
Q Consensus 8 P~IDl~~~~~~~~~~~l~~A~~~~Gff~l~nh-gi~~~~~~ 47 (211)
-+|||+.|+. +.+..+.|.+.|.=.|++. |.+.+.++
T Consensus 83 VvIDFT~P~a---~~~~~~~~~~~g~~~VvGTTG~~~e~l~ 120 (286)
T PLN02775 83 IVVDYTLPDA---VNDNAELYCKNGLPFVMGTTGGDRDRLL 120 (286)
T ss_pred EEEECCChHH---HHHHHHHHHHCCCCEEEECCCCCHHHHH
Confidence 5799987653 5556778888888888876 78776433
No 89
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=28.15 E-value=54 Score=19.55 Aligned_cols=34 Identities=24% Similarity=0.129 Sum_probs=19.8
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHcCCChhhhh
Q 028254 122 RSTMEYYHQKV-LSAGRRLIHLIALALNLNEDFFE 155 (211)
Q Consensus 122 ~~~~~~y~~~~-~~l~~~ll~~la~~Lgl~~~~~~ 155 (211)
+.++..+...- ..+....+..||.+||++.+.+-
T Consensus 24 ~~tl~~~~~~~~~~~~~~~l~~ia~~l~~~~~el~ 58 (63)
T PF13443_consen 24 RSTLSRILNGKPSNPSLDTLEKIAKALNCSPEELF 58 (63)
T ss_dssp HHHHHHHHTTT-----HHHHHHHHHHHT--HHHCT
T ss_pred HHHHHHHHhcccccccHHHHHHHHHHcCCCHHHHh
Confidence 34555665543 57888889999999999877554
No 90
>PRK15331 chaperone protein SicA; Provisional
Probab=27.86 E-value=64 Score=24.21 Aligned_cols=41 Identities=17% Similarity=0.365 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHhhcC
Q 028254 18 LSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSL 59 (211)
Q Consensus 18 ~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~l 59 (211)
.+.++.|.+|+.+ |-=.-.-|||+++.++.++..+..||..
T Consensus 10 ~~~~~~i~~al~~-G~tlk~l~gis~~~le~iY~~Ay~~y~~ 50 (165)
T PRK15331 10 ERVAEMIWDAVSE-GATLKDVHGIPQDMMDGLYAHAYEFYNQ 50 (165)
T ss_pred HHHHHHHHHHHHC-CCCHHHHhCCCHHHHHHHHHHHHHHHHC
Confidence 4567788888887 5333347899999999999999999974
No 91
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=27.82 E-value=99 Score=18.34 Aligned_cols=25 Identities=4% Similarity=-0.009 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhhh
Q 028254 130 QKVLSAGRRLIHLIALALNLNEDFF 154 (211)
Q Consensus 130 ~~~~~l~~~ll~~la~~Lgl~~~~~ 154 (211)
+.-.+|+..|.+++++.||.+++.+
T Consensus 15 eqk~~l~~~it~~l~~~~~~p~~~v 39 (62)
T PRK00745 15 EQKRKLVEEITRVTVETLGCPPESV 39 (62)
T ss_pred HHHHHHHHHHHHHHHHHcCCChhHE
Confidence 3456888899999999999987654
No 92
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=27.67 E-value=89 Score=18.16 Aligned_cols=25 Identities=12% Similarity=0.060 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhhh
Q 028254 130 QKVLSAGRRLIHLIALALNLNEDFF 154 (211)
Q Consensus 130 ~~~~~l~~~ll~~la~~Lgl~~~~~ 154 (211)
+.-++++..|.++++..+|.+++.+
T Consensus 14 eqk~~l~~~i~~~l~~~~g~~~~~v 38 (58)
T cd00491 14 EQKRELIERVTEAVSEILGAPEATI 38 (58)
T ss_pred HHHHHHHHHHHHHHHHHhCcCcccE
Confidence 4556888889999999999987643
No 93
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=26.83 E-value=1e+02 Score=18.32 Aligned_cols=25 Identities=12% Similarity=0.021 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhhh
Q 028254 130 QKVLSAGRRLIHLIALALNLNEDFF 154 (211)
Q Consensus 130 ~~~~~l~~~ll~~la~~Lgl~~~~~ 154 (211)
+.-.+++..|.++++..||.+++..
T Consensus 15 eqK~~l~~~it~~l~~~lg~~~~~v 39 (63)
T TIGR00013 15 EQKRQLIEGVTEAMAETLGANLESI 39 (63)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccE
Confidence 3456788889999999999987643
No 94
>PRK00099 rplJ 50S ribosomal protein L10; Reviewed
Probab=26.77 E-value=2.5e+02 Score=20.82 Aligned_cols=38 Identities=3% Similarity=0.039 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhcCeEEEEec-CCCHHHHHHHHHHHHH
Q 028254 18 LSTAKSIRQACIDYGFFYLVNH-GVEEELISQMFNESKK 55 (211)
Q Consensus 18 ~~~~~~l~~A~~~~Gff~l~nh-gi~~~~~~~~~~~~~~ 55 (211)
...+++|.+.++++-++++.++ |++...+.++....+.
T Consensus 7 ~~~v~~l~~~l~~~~~v~v~~~~gl~~~~~~~lR~~lr~ 45 (172)
T PRK00099 7 KEIVAELAEKLKKAQSAVVADYRGLTVAQMTELRKKLRE 45 (172)
T ss_pred HHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHH
Confidence 3458888888888877777766 8888777777766554
No 95
>cd05796 Ribosomal_P0_like Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized eukaryotic proteins with similarity to the 60S ribosomal protein P0, including the Saccharomyces cerevisiae protein called mRNA turnover protein 4 (MRT4). MRT4 may be involved in mRNA decay. P0 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. It occupies the L7/L12 stalk of the ribosome. The stalk is known to contain the binding site for elongation factors EF-G and EF-Tu; however, there is disagreement as to whether or not P0 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, P0 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WAS
Probab=26.38 E-value=2.1e+02 Score=21.21 Aligned_cols=38 Identities=18% Similarity=0.375 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhcCeEEEEe-cCCCHHHHHHHHHHHHH
Q 028254 18 LSTAKSIRQACIDYGFFYLVN-HGVEEELISQMFNESKK 55 (211)
Q Consensus 18 ~~~~~~l~~A~~~~Gff~l~n-hgi~~~~~~~~~~~~~~ 55 (211)
.+.+++|.+.+.++-.++|.+ +|++...++++.+..|.
T Consensus 4 ~~~v~~l~e~l~~y~~v~iv~~~gl~~~ql~~iR~~lr~ 42 (163)
T cd05796 4 QKLVENIREAVDKYKYIYVFSVDNMRNNKLKDIRQEWKD 42 (163)
T ss_pred HHHHHHHHHHHHhCCEEEEEEecCCCHHHHHHHHHHhcC
Confidence 356889999999988777665 58999888887776553
No 96
>PRK13835 conjugal transfer protein TrbH; Provisional
Probab=26.07 E-value=88 Score=22.92 Aligned_cols=28 Identities=14% Similarity=0.279 Sum_probs=20.3
Q ss_pred eEeCCCcchHHHHHHHHHHHHhcCeEEEE
Q 028254 9 VIDLSSPDRLSTAKSIRQACIDYGFFYLV 37 (211)
Q Consensus 9 ~IDl~~~~~~~~~~~l~~A~~~~Gff~l~ 37 (211)
+|.|.... ......|..+++.|||-.+.
T Consensus 60 t~~l~q~~-d~Fg~aL~~aLr~~GYaVvt 87 (145)
T PRK13835 60 TIKLKKDT-SPFGQALEAALKGWGYAVVT 87 (145)
T ss_pred EEEEeecC-cHHHHHHHHHHHhcCeEEee
Confidence 44444333 35677899999999999997
No 97
>PRK00766 hypothetical protein; Provisional
Probab=25.89 E-value=3e+02 Score=21.23 Aligned_cols=36 Identities=11% Similarity=0.198 Sum_probs=27.2
Q ss_pred CeEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhh
Q 028254 32 GFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKL 67 (211)
Q Consensus 32 Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~ 67 (211)
+=+|+..|||+.+...++.........+|+-.+.+.
T Consensus 145 ~~vyvs~~gi~l~~A~~lv~~~~~~~riPEPlR~Ah 180 (194)
T PRK00766 145 GPLYIQAAGIDPETAAEIVRLTSTRSLIPEPLRLAH 180 (194)
T ss_pred CCEEEEEcCCCHHHHHHHHHHhccCCCCchhhHHHH
Confidence 446666799998877777776666778998887764
No 98
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=25.33 E-value=1.6e+02 Score=23.17 Aligned_cols=34 Identities=15% Similarity=0.233 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhcCe---EEEEecCCCHHHHHHHHH
Q 028254 18 LSTAKSIRQACIDYGF---FYLVNHGVEEELISQMFN 51 (211)
Q Consensus 18 ~~~~~~l~~A~~~~Gf---f~l~nhgi~~~~~~~~~~ 51 (211)
.+.+..+.+.+..+|| +.|.+||=....++.+.+
T Consensus 85 ~~~l~di~~sl~~~Gf~~ivivngHgGN~~~l~~~~~ 121 (237)
T PF02633_consen 85 IALLRDILRSLARHGFRRIVIVNGHGGNIAALEAAAR 121 (237)
T ss_dssp HHHHHHHHHHHHHHT--EEEEEESSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEEECCHhHHHHHHHHHH
Confidence 4567888899999998 445568754444444433
No 99
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=24.66 E-value=70 Score=19.43 Aligned_cols=36 Identities=11% Similarity=0.193 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHH----HHHHHHHHHHHHcCCChhhhh
Q 028254 120 TWRSTMEYYHQKVLS----AGRRLIHLIALALNLNEDFFE 155 (211)
Q Consensus 120 ~f~~~~~~y~~~~~~----l~~~ll~~la~~Lgl~~~~~~ 155 (211)
.-.+.|++++....- ........||..|||++..+.
T Consensus 11 ~Q~~~Le~~fe~~~y~~~~~~~~~r~~la~~lgl~~~vvK 50 (58)
T TIGR01565 11 EQKEKMRDFAEKLGWKLKDKRREEVREFCEEIGVTRKVFK 50 (58)
T ss_pred HHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhCCCHHHee
Confidence 345667777776654 777788899999999987654
No 100
>PRK06208 hypothetical protein; Provisional
Probab=24.54 E-value=73 Score=25.98 Aligned_cols=37 Identities=22% Similarity=0.135 Sum_probs=26.4
Q ss_pred CCCeEeC-CCc-chHHHHHHHHHHHHhcCeEEEEecCCC
Q 028254 6 QLPVIDL-SSP-DRLSTAKSIRQACIDYGFFYLVNHGVE 42 (211)
Q Consensus 6 ~iP~IDl-~~~-~~~~~~~~l~~A~~~~Gff~l~nhgi~ 42 (211)
.||++.. ... ...+.++.+.+++++...+.|.|||+=
T Consensus 163 ~ip~~~~~~g~~~s~ela~~va~~l~~~~avLL~NHGvv 201 (274)
T PRK06208 163 DHALFDDFTGVVVDTSEGRRIAAALGTHKAVILQNHGLL 201 (274)
T ss_pred CceeccCCCCccCchHHHHHHHHHhccCCEEEECCCCce
Confidence 3666543 211 245678889999999999999999953
No 101
>cd05795 Ribosomal_P0_L10e Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e. P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These eukaryotic and archaeal P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2.
Probab=24.42 E-value=2.6e+02 Score=20.98 Aligned_cols=38 Identities=8% Similarity=0.132 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhcCeEEEEec-CCCHHHHHHHHHHHHH
Q 028254 18 LSTAKSIRQACIDYGFFYLVNH-GVEEELISQMFNESKK 55 (211)
Q Consensus 18 ~~~~~~l~~A~~~~Gff~l~nh-gi~~~~~~~~~~~~~~ 55 (211)
.+.+++|.+.+.++-.++|.+. |++...++++.+..+.
T Consensus 4 ~~~v~el~e~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~ 42 (175)
T cd05795 4 KEYVEKLTELLKSYPKVLIVDADNVGSKQLQKIRRSLRG 42 (175)
T ss_pred HHHHHHHHHHHHhCCEEEEEEecCCChHHHHHHHHHhhC
Confidence 3568899999999887777754 8998888887776653
No 102
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=23.69 E-value=70 Score=18.62 Aligned_cols=36 Identities=19% Similarity=0.117 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhh
Q 028254 119 PTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFF 154 (211)
Q Consensus 119 ~~f~~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~ 154 (211)
+.-...+++++.........-...||..|||+....
T Consensus 9 ~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V 44 (57)
T PF00046_consen 9 KEQLKVLEEYFQENPYPSKEEREELAKELGLTERQV 44 (57)
T ss_dssp HHHHHHHHHHHHHSSSCHHHHHHHHHHHHTSSHHHH
T ss_pred HHHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 455788889999888888888999999999987543
No 103
>PRK10628 LigB family dioxygenase; Provisional
Probab=23.59 E-value=1.1e+02 Score=24.60 Aligned_cols=39 Identities=23% Similarity=0.238 Sum_probs=24.2
Q ss_pred CCCCCCCCeEeCCCc---ch--HHHHHHHHHHHHhcCeEEEEecC
Q 028254 1 MTEALQLPVIDLSSP---DR--LSTAKSIRQACIDYGFFYLVNHG 40 (211)
Q Consensus 1 m~~~~~iP~IDl~~~---~~--~~~~~~l~~A~~~~Gff~l~nhg 40 (211)
|=+.++||||-+|-. +. .-.+.+..+.+++-|... +..|
T Consensus 105 m~P~adIPVvqlSl~~~~~~~~h~~lG~aL~~LR~~gvLI-igSG 148 (246)
T PRK10628 105 MYPDADIPMVQLSIDSTKPAAWHFEMGRKLAALRDEGIML-VASG 148 (246)
T ss_pred hCCCCCCCeEEeecCCCCCHHHHHHHHHHHHhhccCCEEE-EecC
Confidence 446789999999832 11 112444456677889764 4555
No 104
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=23.36 E-value=99 Score=21.28 Aligned_cols=25 Identities=12% Similarity=0.169 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhhh
Q 028254 130 QKVLSAGRRLIHLIALALNLNEDFF 154 (211)
Q Consensus 130 ~~~~~l~~~ll~~la~~Lgl~~~~~ 154 (211)
+.-.+++..|.+.+++.||++++.+
T Consensus 72 e~k~~l~~~i~~~l~~~lgi~~~rv 96 (116)
T PTZ00397 72 SNNSSIAAAITKILASHLKVKSERV 96 (116)
T ss_pred HHHHHHHHHHHHHHHHHhCcCcccE
Confidence 3455777888889999999998743
No 105
>COG5589 Uncharacterized conserved protein [Function unknown]
Probab=23.27 E-value=2.3e+02 Score=20.74 Aligned_cols=35 Identities=17% Similarity=0.267 Sum_probs=22.2
Q ss_pred CCCCCCCCCCch--hHHHHHHHHHHHHH-HHHHHHHHHH
Q 028254 108 SMNQWPSLEILP--TWRSTMEYYHQKVL-SAGRRLIHLI 143 (211)
Q Consensus 108 ~~n~wP~~~~~~--~f~~~~~~y~~~~~-~l~~~ll~~l 143 (211)
.+|.||.. .+| .||+.++.+-=+.. .+-..++.++
T Consensus 87 K~nppked-h~p~~afRea~Ka~ELq~Ek~vl~~~v~aL 124 (164)
T COG5589 87 KSNPPKED-HLPDTAFREALKAFELQLEKQVLADLVHAL 124 (164)
T ss_pred cCCCCccc-cccHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 67888875 344 59999988866665 3333343333
No 106
>COG3113 Predicted NTP binding protein (contains STAS domain) [General function prediction only]
Probab=22.98 E-value=1.8e+02 Score=19.79 Aligned_cols=50 Identities=24% Similarity=0.205 Sum_probs=32.1
Q ss_pred CCeEeCCCcch-----HHHHHHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHhhcCCHH
Q 028254 7 LPVIDLSSPDR-----LSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLE 62 (211)
Q Consensus 7 iP~IDl~~~~~-----~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e 62 (211)
+--||++...+ -+..-.+.+-|+..|. .+.-+|+|..+. .-.++|+++..
T Consensus 41 ~~~idLs~v~rvDSaglALL~~~~~~~k~~g~-~~~L~~~p~~L~-----tLa~Ly~l~~~ 95 (99)
T COG3113 41 TVRIDLSGVSRVDSAGLALLLHLIRLAKKQGN-AVTLTGVPEQLR-----TLAELYNLSDW 95 (99)
T ss_pred eEEEehhhcceechHHHHHHHHHHHHHHHcCC-eeEEecCcHHHH-----HHHHHhCcHhh
Confidence 45678874432 3446677788999998 788899987532 22345565543
No 107
>cd00250 CAS_like Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases catalyze a hydroxylation reaction, which leads to the incorporation of an oxygen atom from dioxygen into a hydroxyl group and conversion of 2OG to succinate and CO2
Probab=22.46 E-value=1.6e+02 Score=23.30 Aligned_cols=48 Identities=17% Similarity=0.228 Sum_probs=32.6
Q ss_pred CCCeEeCCCc-chHHHHHHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHh
Q 028254 6 QLPVIDLSSP-DRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKF 56 (211)
Q Consensus 6 ~iP~IDl~~~-~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~f 56 (211)
.+|.+++... .......++..++.++|+..+.+-....+. +...++.|
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~---~~~~~~~~ 66 (262)
T cd00250 18 ALPVLSFLEVLELDSPLGKLLLASAGVGFAELEGAPLDPAA---LLGLAERI 66 (262)
T ss_pred CCCcccHHHHhcCHHHHHHHHHHHHHhcEEEEeCCCCCHHH---HHHHHHHh
Confidence 4677777532 234467789999999999999987766543 34444444
No 108
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=22.18 E-value=1.9e+02 Score=22.55 Aligned_cols=39 Identities=18% Similarity=0.348 Sum_probs=27.1
Q ss_pred cchHHHHHHHHHHHHhcCeEEEEec-CCCHHHHHHHHHHHH
Q 028254 15 PDRLSTAKSIRQACIDYGFFYLVNH-GVEEELISQMFNESK 54 (211)
Q Consensus 15 ~~~~~~~~~l~~A~~~~Gff~l~nh-gi~~~~~~~~~~~~~ 54 (211)
....++.+.+.+||.+.||-. .-. ||+.+-++++++.+.
T Consensus 160 l~~leE~~avAkA~a~~g~~l-EPTGGIdl~N~~~I~~i~l 199 (218)
T PF07071_consen 160 LKHLEELKAVAKACARNGFTL-EPTGGIDLDNFEEIVKICL 199 (218)
T ss_dssp TTTHHHHHHHHHHHHHCT-EE-EEBSS--TTTHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCcee-CCcCCcCHHHHHHHHHHHH
Confidence 345777889999999999877 655 698877777666554
No 109
>PF10509 GalKase_gal_bdg: Galactokinase galactose-binding signature; InterPro: IPR019539 This entry represents a highly conserved galactokinase signature sequence which appears to be present in all galactokinases, irrespective of how many other ATP binding sites, etc that they carry []. The function of this domain appears to be to bind galactose [], and it is normally located at the N terminus of these enzymes []. It is associated with IPR013750 from INTERPRO and IPR006204 from INTERPRO. While all enzymes in this entry posses galactokinase activity, some are annotated as N-acetylgalactosamine kinases as they also posses this enzyme activity.; PDB: 1PIE_A 1WUU_A 1S4E_D 2A2C_A 2A2D_A 2AJ4_A 2DEJ_A 2CZ9_A 2DEI_A 3V5R_A ....
Probab=22.01 E-value=47 Score=19.60 Aligned_cols=14 Identities=29% Similarity=0.268 Sum_probs=7.9
Q ss_pred ccccccccCcceeE
Q 028254 185 GASAHSDYGMITLL 198 (211)
Q Consensus 185 ~~~~HtD~g~lTiL 198 (211)
-+|+|||+.--.+|
T Consensus 24 liGeHtDy~gG~Vl 37 (52)
T PF10509_consen 24 LIGEHTDYNGGFVL 37 (52)
T ss_dssp EE-TT-GGGT-EEE
T ss_pred ecCcccccCCCeEE
Confidence 47899999655554
No 110
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=21.80 E-value=95 Score=17.73 Aligned_cols=18 Identities=22% Similarity=0.279 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHhcCeE
Q 028254 17 RLSTAKSIRQACIDYGFF 34 (211)
Q Consensus 17 ~~~~~~~l~~A~~~~Gff 34 (211)
..+..++|.+++++.||-
T Consensus 27 s~~tr~rI~~~a~~lgY~ 44 (46)
T PF00356_consen 27 SEETRERILEAAEELGYR 44 (46)
T ss_dssp THHHHHHHHHHHHHHTB-
T ss_pred CHHHHHHHHHHHHHHCCC
Confidence 366789999999999983
No 111
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=21.78 E-value=1.3e+02 Score=22.60 Aligned_cols=19 Identities=21% Similarity=0.132 Sum_probs=13.4
Q ss_pred cceeccCCCCCCCCCCCcccccccccc
Q 028254 166 FLRLLHYPGELVSSNQEVCGASAHSDY 192 (211)
Q Consensus 166 ~lr~~~Yp~~~~~~~~~~~~~~~HtD~ 192 (211)
..=+|+|++- -+++.|.|-
T Consensus 96 ~~LvN~Y~~G--------d~mg~H~D~ 114 (169)
T TIGR00568 96 ACLVNRYAPG--------ATLSLHQDR 114 (169)
T ss_pred EEEEEeecCC--------Ccccccccc
Confidence 4678999752 268889885
No 112
>COG0235 AraD Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases [Carbohydrate transport and metabolism]
Probab=21.47 E-value=33 Score=26.88 Aligned_cols=36 Identities=25% Similarity=0.352 Sum_probs=19.3
Q ss_pred CCCeEeCCCcchHHHHHHHHHHHHhcCeEE--EEecCC
Q 028254 6 QLPVIDLSSPDRLSTAKSIRQACIDYGFFY--LVNHGV 41 (211)
Q Consensus 6 ~iP~IDl~~~~~~~~~~~l~~A~~~~Gff~--l~nhgi 41 (211)
.||++++..+...+...++..++....-+. |.|||+
T Consensus 127 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~HG~ 164 (219)
T COG0235 127 GIPCAPYAGPGSVELAEALAEAADLAEAVLKLLRNHGV 164 (219)
T ss_pred CcccccCCCCCchhhHHHHHHHHHHHHHHHHHHHcCCc
Confidence 478887775432233334444444444444 777774
No 113
>PF01187 MIF: Macrophage migration inhibitory factor (MIF); InterPro: IPR001398 Macrophage migration inhibitory factor (MIF) is a key regulatory cytokine within innate and adaptive immune responses, capable of promoting and modulating the magnitude of the response []. MIF is released from T-cells and macrophages, and acts within the neuroendocrine system. MIF is capable of tautomerase activity, although its biological function has not been fully characterised. It is induced by glucocorticoid and is capable of overriding the anti-inflammatory actions of glucocorticoid []. MIF regulates cytokine secretion and the expression of receptors involved in the immune response. It can be taken up into target cells in order to interact with intracellular signalling molecules, inhibiting p53 function, and/or activating components of the mitogen-activated protein kinase and Jun-activation domain-binding protein-1 (Jab-1) []. MIF has been linked to various inflammatory diseases, such as rheumatoid arthritis and atherosclerosis []. The MIF homologue D-dopachrome tautomerase (4.1.1.84 from EC) is involved in detoxification through the conversion of dopaminechrome (and possibly norepinephrinechrome), the toxic quinine product of the neurotransmitter dopamine (and norepinephrine), to an indole derivative that can serve as a precursor to neuromelanin [, ].; PDB: 1UIZ_C 3FWT_A 1HFO_F 2WKB_D 3RF4_B 2OS5_A 3RF5_A 2XCZ_A 3FWU_A 3B64_A ....
Probab=21.39 E-value=1.2e+02 Score=20.77 Aligned_cols=25 Identities=8% Similarity=0.121 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhhh
Q 028254 130 QKVLSAGRRLIHLIALALNLNEDFF 154 (211)
Q Consensus 130 ~~~~~l~~~ll~~la~~Lgl~~~~~ 154 (211)
+...+++..|...+.+.||++.+.+
T Consensus 70 ~~n~~~s~~i~~~l~~~LgIp~~Ri 94 (114)
T PF01187_consen 70 EQNKKYSAAITEFLEEELGIPPDRI 94 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHT--GGGE
T ss_pred HHHHHHHHHHHHHHHHHhCCCcCce
Confidence 4556778888899999999998754
No 114
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=21.23 E-value=2.6e+02 Score=22.51 Aligned_cols=44 Identities=20% Similarity=0.333 Sum_probs=23.7
Q ss_pred eEeCCCcchHHHHHHHHHHHHhcCeEEEEec-CCCHHHHHHHHHHHHH
Q 028254 9 VIDLSSPDRLSTAKSIRQACIDYGFFYLVNH-GVEEELISQMFNESKK 55 (211)
Q Consensus 9 ~IDl~~~~~~~~~~~l~~A~~~~Gff~l~nh-gi~~~~~~~~~~~~~~ 55 (211)
+||++.+ +...++..+|-+.|.=.|+.. |.+.+..+++.++++.
T Consensus 72 VIdfT~p---~~~~~~~~~al~~g~~vVigttg~~~e~~~~l~~aA~~ 116 (266)
T TIGR00036 72 LIDFTTP---EGVLNHLKFALEHGVRLVVGTTGFSEEDKQELADLAEK 116 (266)
T ss_pred EEECCCh---HHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHhc
Confidence 5666643 223445555666665555433 5666666665555444
No 115
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=21.20 E-value=1.3e+02 Score=18.79 Aligned_cols=20 Identities=30% Similarity=0.378 Sum_probs=16.2
Q ss_pred HHHHHHHHHhcCeEEEEecC
Q 028254 21 AKSIRQACIDYGFFYLVNHG 40 (211)
Q Consensus 21 ~~~l~~A~~~~Gff~l~nhg 40 (211)
++++.++++..||+.+.--|
T Consensus 9 ~ke~ik~Le~~Gf~~vrqkG 28 (66)
T COG1724 9 AKEVIKALEKDGFQLVRQKG 28 (66)
T ss_pred HHHHHHHHHhCCcEEEEeec
Confidence 56678899999999987655
No 116
>PF08066 PMC2NT: PMC2NT (NUC016) domain; InterPro: IPR012588 Exosomes are nano-compartments that function in the degradation or processing of RNA (including mRNA, rRNA, snRNA and snoRNA) [, ]. Exosomes occur in both archaea and eukaryotes, and have a similar overall structure to each other and to bacterial/organelle PNPases (polynucleotide phosphorylases; 2.7.7.8 from EC) [], consisting of a barrel structure composed of a hexameric ring of PH domains that act as a degradation chamber, and an S1-domain/KH-domain containing cap that binds the RNA substrate (and sometimes accessory proteins) in order to regulate and restrict entry into the degradation chamber []. There are two types of exosomes in eukaryotes, cytoplasmic exosomes that are responsible for 3'-5' exoribonuclease degradation of mRNAs, and nuclear exosomes that degrade pre-mRNAs (such as nonsense transcripts) and degrade rRNAs, snRNAs and snoRNAs. Unstructured RNA substrates feed in through the pore made by the S1 domains, are degraded by the PH domain ring, and exit as nucleotides via the PH pore at the opposite end of the barrel [, ]. There are several accessory proteins that help degrade, unwind or polyadenylate RNA substrate before they enter the exosome. This entry represents the N-terminal domain of Rrp6 (exosome component 10 in humans), a nuclear exosome accessory factor that interacts with the bottom of the hexameric PH-ring opposite the cap. Rrp6 functions as a hydrolytic exonuclease, and is homologous to RNase-D in Escherichia coli. More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; GO: 0006396 RNA processing, 0000176 nuclear exosome (RNase complex)
Probab=20.95 E-value=1.7e+02 Score=19.24 Aligned_cols=28 Identities=18% Similarity=0.332 Sum_probs=14.0
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHcC
Q 028254 121 WRSTM-EYYHQKVLSAGRRLIHLIALALN 148 (211)
Q Consensus 121 f~~~~-~~y~~~~~~l~~~ll~~la~~Lg 148 (211)
|-..+ ..|.+.+.+.+.+|+.++...|.
T Consensus 18 Fy~s~dp~f~~~ld~~s~rll~l~n~ll~ 46 (91)
T PF08066_consen 18 FYRSFDPEFAESLDEQSQRLLSLINSLLK 46 (91)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344 44555555555555555555443
No 117
>COG4951 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.65 E-value=1.1e+02 Score=24.98 Aligned_cols=27 Identities=15% Similarity=0.377 Sum_probs=21.8
Q ss_pred CCeEeCCCcchHHHHHHHHHHHHhcCe
Q 028254 7 LPVIDLSSPDRLSTAKSIRQACIDYGF 33 (211)
Q Consensus 7 iP~IDl~~~~~~~~~~~l~~A~~~~Gf 33 (211)
+=++||.+.+.++.+..+..+|.+.|.
T Consensus 128 fLa~DfDeG~WK~da~af~r~c~e~gi 154 (361)
T COG4951 128 FLAVDFDEGEWKKDASAFMRSCDELGV 154 (361)
T ss_pred EEEEecCccchHHHHHHHHHHHHhhCC
Confidence 346788777788888899999999884
No 118
>COG3100 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.60 E-value=2.8e+02 Score=18.70 Aligned_cols=29 Identities=24% Similarity=0.384 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhcCeEEEEecCCCHHHHHHH
Q 028254 20 TAKSIRQACIDYGFFYLVNHGVEEELISQM 49 (211)
Q Consensus 20 ~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~ 49 (211)
.++++.++.++.||+. ---.-++++++..
T Consensus 66 dv~kV~~~i~~QGfyL-Q~pp~~e~llk~h 94 (103)
T COG3100 66 DVEKVKQAIEEQGFYL-QLPPPPEDLLKQH 94 (103)
T ss_pred hHHHHHHHHHhcceeE-ecCCCcHHHHHHh
Confidence 3788999999999854 4444455554443
No 119
>PF07927 YcfA: YcfA-like protein; InterPro: IPR012933 This entry represents UPF0395, which contains viral, archaeal and bacterial proteins. It includes YncN of Escherichia coli K12. Most of these proteins are hypothetical proteins of unknown function. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1WHZ_A.
Probab=20.58 E-value=1.3e+02 Score=17.45 Aligned_cols=17 Identities=12% Similarity=0.104 Sum_probs=11.1
Q ss_pred HHHHHHHHhcCeEEEEe
Q 028254 22 KSIRQACIDYGFFYLVN 38 (211)
Q Consensus 22 ~~l~~A~~~~Gff~l~n 38 (211)
++|.++++..||.....
T Consensus 2 ~el~k~L~~~G~~~~r~ 18 (56)
T PF07927_consen 2 RELIKLLEKAGFEEVRQ 18 (56)
T ss_dssp HHHHHHHHHTT-EEEEE
T ss_pred hHHHHHHHHCCCEEecC
Confidence 45777788888877643
No 120
>TIGR02763 chlamy_scaf chlamydiaphage internal scaffolding protein. Members of this protein family are encoded by genes in chlamydiaphage such as Chp2, viruses with around eight genes that infect obligately intracellular bacterial pathogens of the genus Chlamydia. This protein, initially designated VP3 (as if a structural protein of mature viral particles), is displaced from procapsids as DNA is packaged, and therefore is described as a scafolding protein.
Probab=20.52 E-value=2.5e+02 Score=19.32 Aligned_cols=46 Identities=11% Similarity=0.083 Sum_probs=30.6
Q ss_pred HHHHHHhcCeEEEEec-CCC-HHHHHHHHHHHHHhhcCCHHHHhhhccc
Q 028254 24 IRQACIDYGFFYLVNH-GVE-EELISQMFNESKKFFSLQLEDKMKLARK 70 (211)
Q Consensus 24 l~~A~~~~Gff~l~nh-gi~-~~~~~~~~~~~~~fF~lp~e~K~~~~~~ 70 (211)
|+.-.+..|| |.... .++ .+.++.+.+....|.+||...+..+...
T Consensus 14 l~~~e~Rs~~-yg~c~sp~D~qeAln~Vie~~eaFdsLPAkvRe~FgNd 61 (114)
T TIGR02763 14 LHAFETRSPE-YGECPSPLDYQEALNIVIEGEEAFDSLPAKVRENFGND 61 (114)
T ss_pred HHHHHHhCCc-cccCCCchhHHHHHHHHHHHHHHHHHhhHHHHHHhCCC
Confidence 3333355554 44444 333 4667888888889999999999887653
No 121
>COG0244 RplJ Ribosomal protein L10 [Translation, ribosomal structure and biogenesis]
Probab=20.43 E-value=3.8e+02 Score=20.17 Aligned_cols=38 Identities=5% Similarity=0.136 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhcCeEEEEec-CCCHHHHHHHHHHHHH
Q 028254 18 LSTAKSIRQACIDYGFFYLVNH-GVEEELISQMFNESKK 55 (211)
Q Consensus 18 ~~~~~~l~~A~~~~Gff~l~nh-gi~~~~~~~~~~~~~~ 55 (211)
...+++|.+.+++...|.+.+. |++...+.++....|.
T Consensus 9 ~~~v~el~e~~~~s~~~~i~dy~Gl~~~ql~~lR~~lr~ 47 (175)
T COG0244 9 KELVAELKELIKESPSVVIVDYRGLTVAQLTELRKKLRE 47 (175)
T ss_pred HHHHHHHHHHHhhCCEEEEEEeCCCcHHHHHHHHHHHHh
Confidence 4558889999988877776665 9999888888777665
No 122
>PF08921 DUF1904: Domain of unknown function (DUF1904); InterPro: IPR015017 This entry represents a family of hypothetical bacterial proteins. ; PDB: 1U9D_B.
Probab=20.35 E-value=1.4e+02 Score=20.58 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhhhh
Q 028254 130 QKVLSAGRRLIHLIALALNLNEDFFE 155 (211)
Q Consensus 130 ~~~~~l~~~ll~~la~~Lgl~~~~~~ 155 (211)
+.+..++..|+.-|+...+.+.+.|.
T Consensus 12 e~v~~~S~~LideLa~i~~~p~e~ft 37 (108)
T PF08921_consen 12 EQVQELSKELIDELAEICGCPRENFT 37 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHT--GGG-E
T ss_pred HHHHHHhHHHHHHHHHHHCCCcceEE
Confidence 46788999999999999999998776
No 123
>PF14133 DUF4300: Domain of unknown function (DUF4300)
Probab=20.22 E-value=2.2e+02 Score=22.99 Aligned_cols=39 Identities=15% Similarity=0.251 Sum_probs=29.9
Q ss_pred CCCcchHHHHHHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHhhc
Q 028254 12 LSSPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFS 58 (211)
Q Consensus 12 l~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~ 58 (211)
+|.....+..+++.+++. ++||+.+-++..+++..+|-+
T Consensus 3 ySNL~d~~s~~eV~~~L~--------~agi~~~~i~~F~~~V~~yN~ 41 (250)
T PF14133_consen 3 YSNLVDKESQEEVKKALK--------SAGISKENIDNFFEWVNDYNQ 41 (250)
T ss_pred eeccCCHHHHHHHHHHHH--------HcCCCHHHHHHHHHHHHHHHH
Confidence 444445556777777776 567999999999999999876
No 124
>smart00796 AHS1 Allophanate hydrolase subunit 1. This domain represents subunit 1 of allophanate hydrolase (AHS1).
Probab=20.08 E-value=2.7e+02 Score=21.51 Aligned_cols=38 Identities=16% Similarity=0.050 Sum_probs=24.2
Q ss_pred ceeccCCCCCCCCCCCccccccccccCcceeEe-cCCCCCceee
Q 028254 167 LRLLHYPGELVSSNQEVCGASAHSDYGMITLLA-TDGVPGLQAC 209 (211)
Q Consensus 167 lr~~~Yp~~~~~~~~~~~~~~~HtD~g~lTiL~-qd~~~GLQV~ 209 (211)
+.+-+|.+....-+.+.+|++ |..|-++ ++.-||-|+.
T Consensus 147 l~~PR~~~PR~~vPaGSVgIa-----g~qt~IYp~~SPGGW~iI 185 (201)
T smart00796 147 LATPRRSTPRTRVPAGSVGIA-----GAQTGIYPLESPGGWQLI 185 (201)
T ss_pred ccCCCCCCCccccCCCeEEEc-----cceeEEECCCCCCcceEe
Confidence 555555322222356788888 7888888 4567787763
Done!