Query 028254
Match_columns 211
No_of_seqs 221 out of 1073
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 14:04:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028254.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028254hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oox_A Putative 2OG-Fe(II) oxy 100.0 5.2E-53 1.8E-57 347.1 19.5 200 1-209 2-211 (312)
2 1gp6_A Leucoanthocyanidin diox 100.0 1.3E-50 4.3E-55 338.0 18.5 196 5-210 45-253 (356)
3 1w9y_A 1-aminocyclopropane-1-c 100.0 2.8E-50 9.7E-55 331.2 13.1 189 6-210 3-199 (319)
4 1odm_A Isopenicillin N synthas 100.0 7.3E-49 2.5E-53 324.7 19.3 199 1-209 1-234 (331)
5 1dcs_A Deacetoxycephalosporin 100.0 5.2E-49 1.8E-53 322.9 13.5 190 5-210 3-208 (311)
6 3on7_A Oxidoreductase, iron/as 100.0 6.3E-48 2.2E-52 312.1 15.9 185 5-210 2-195 (280)
7 2opi_A L-fuculose-1-phosphate 83.2 0.63 2.2E-05 35.1 2.5 36 6-41 125-160 (212)
8 1e4c_P L-fuculose 1-phosphate 79.7 0.97 3.3E-05 34.2 2.4 36 6-41 122-157 (215)
9 2fk5_A Fuculose-1-phosphate al 79.4 1.2 4E-05 33.4 2.7 36 6-41 117-153 (200)
10 2dbn_A Hypothetical protein YB 79.3 0.79 2.7E-05 38.7 1.9 54 4-58 98-151 (461)
11 1pvt_A Sugar-phosphate aldolas 77.1 1.3 4.6E-05 33.9 2.5 36 6-41 161-196 (238)
12 2v9l_A Rhamnulose-1-phosphate 74.9 1.4 4.7E-05 34.7 2.1 36 6-41 179-214 (274)
13 1otj_A Alpha-ketoglutarate-dep 72.9 3.1 0.0001 32.5 3.7 49 6-57 17-65 (283)
14 3o2g_A Gamma-butyrobetaine dio 71.9 2.8 9.6E-05 34.6 3.4 51 6-59 122-173 (388)
15 2irp_A Putative aldolase class 70.7 2.2 7.7E-05 31.9 2.3 35 6-41 139-176 (208)
16 1oih_A Putative alkylsulfatase 68.7 4.6 0.00016 31.9 3.9 49 7-58 28-77 (301)
17 3ocr_A Class II aldolase/adduc 65.7 3.3 0.00011 32.5 2.4 36 6-41 156-192 (273)
18 2da7_A Zinc finger homeobox pr 61.6 7.3 0.00025 23.9 2.9 39 117-155 12-50 (71)
19 3pvj_A Alpha-ketoglutarate-dep 61.1 6.3 0.00022 30.8 3.3 50 6-58 15-64 (277)
20 1m5a_B Insulin B chain; alpha 59.2 12 0.00041 18.8 2.9 19 18-36 9-27 (30)
21 3r1j_A Alpha-ketoglutarate-dep 58.0 10 0.00034 30.1 4.0 51 6-59 21-72 (301)
22 1vm6_A DHPR, dihydrodipicolina 55.2 24 0.00084 26.8 5.5 41 8-51 56-97 (228)
23 3m4r_A Uncharacterized protein 53.8 4.9 0.00017 30.5 1.5 34 7-41 156-190 (222)
24 3qy9_A DHPR, dihydrodipicolina 50.6 21 0.00073 27.3 4.7 40 18-57 88-127 (243)
25 2x4k_A 4-oxalocrotonate tautom 50.1 19 0.00065 20.4 3.5 25 131-155 18-42 (63)
26 3ijp_A DHPR, dihydrodipicolina 49.7 19 0.00064 28.5 4.3 17 135-151 186-202 (288)
27 4f3y_A DHPR, dihydrodipicolina 48.2 19 0.00064 28.1 4.0 16 135-150 171-186 (272)
28 3m0z_A Putative aldolase; MCSG 47.7 33 0.0011 26.2 5.1 40 15-55 170-210 (249)
29 3abf_A 4-oxalocrotonate tautom 46.7 26 0.00088 20.0 3.7 24 132-155 17-40 (64)
30 2z7b_A MLR6791 protein; class 44.7 12 0.0004 29.3 2.4 36 6-41 157-201 (270)
31 3m6y_A 4-hydroxy-2-oxoglutarat 44.3 36 0.0012 26.3 4.8 40 15-55 193-233 (275)
32 1nx8_A CARC, carbapenem syntha 43.9 5.9 0.0002 30.7 0.5 34 21-57 29-62 (273)
33 2opa_A Probable tautomerase YW 41.5 31 0.0011 19.4 3.5 24 131-154 15-38 (61)
34 2qt7_A Receptor-type tyrosine- 40.8 15 0.00052 23.6 2.0 34 136-170 19-52 (91)
35 1otf_A 4-oxalocrotonate tautom 40.6 32 0.0011 19.4 3.4 24 131-154 15-38 (62)
36 3eat_X Pyoverdine biosynthesis 39.8 17 0.00058 28.6 2.6 48 8-58 32-81 (293)
37 1p9l_A Dihydrodipicolinate red 38.7 87 0.003 23.8 6.5 44 8-54 48-92 (245)
38 2rdq_A 1-deoxypentalenic acid 38.6 40 0.0014 25.9 4.6 36 22-58 22-57 (288)
39 3ghf_A Septum site-determining 37.4 22 0.00075 24.0 2.5 36 9-44 51-86 (120)
40 4hti_A Receptor-type tyrosine- 37.3 22 0.00075 23.3 2.4 37 136-173 26-62 (99)
41 3itq_A Prolyl 4-hydroxylase, a 36.8 44 0.0015 25.0 4.4 18 38-55 45-62 (216)
42 4f87_A Plycb; lysin, bacteriop 35.3 27 0.00091 20.2 2.2 21 5-29 51-71 (72)
43 3ry0_A Putative tautomerase; o 34.1 47 0.0016 19.1 3.5 25 130-154 14-38 (65)
44 1v7z_A Creatininase, creatinin 31.7 50 0.0017 25.4 4.1 34 18-51 96-132 (260)
45 2jig_A Prolyl-4 hydroxylase; h 31.5 57 0.002 24.2 4.3 22 34-55 22-43 (224)
46 3m21_A Probable tautomerase HP 31.4 55 0.0019 19.0 3.5 24 131-154 18-41 (67)
47 2j01_J 50S ribosomal protein L 31.0 1.2E+02 0.0042 21.5 5.9 38 18-55 7-46 (173)
48 1gyx_A YDCE, B1461, hypothetic 30.6 55 0.0019 19.6 3.4 24 131-154 16-39 (76)
49 3mb2_A 4-oxalocrotonate tautom 30.5 55 0.0019 19.4 3.4 24 131-154 16-39 (72)
50 1zav_A 50S ribosomal protein L 30.3 1.3E+02 0.0043 21.7 5.9 38 18-55 9-47 (180)
51 2opw_A Phyhd1 protein; double- 30.0 58 0.002 25.0 4.3 35 23-58 7-41 (291)
52 3m20_A 4-oxalocrotonate tautom 29.6 52 0.0018 18.8 3.0 24 131-154 14-37 (62)
53 2do1_A Nuclear protein HCC-1; 29.4 58 0.002 18.7 3.1 31 21-54 15-45 (55)
54 3ijp_A DHPR, dihydrodipicolina 29.0 87 0.003 24.6 5.1 35 22-56 128-162 (288)
55 1zpw_X Hypothetical protein TT 26.6 74 0.0025 20.1 3.6 47 7-57 7-57 (90)
56 2a1x_A Phytanoyl-COA dioxygena 25.1 65 0.0022 25.1 3.8 36 22-58 25-60 (308)
57 1vm6_A DHPR, dihydrodipicolina 24.6 81 0.0028 23.9 4.0 52 6-57 77-128 (228)
58 4f3y_A DHPR, dihydrodipicolina 23.7 1E+02 0.0035 23.9 4.5 37 21-57 112-148 (272)
59 3ej9_A Alpha-subunit of trans- 23.6 89 0.0031 18.7 3.5 25 130-154 15-39 (76)
60 3djh_A Macrophage migration in 23.2 80 0.0027 20.6 3.4 24 131-154 71-94 (114)
61 3no4_A Creatininase, creatinin 23.0 97 0.0033 24.0 4.3 35 18-52 105-142 (267)
62 2nrk_A Hypothetical protein GR 22.7 10 0.00036 27.5 -1.3 36 7-42 51-87 (173)
63 3exc_X Uncharacterized protein 22.6 1.3E+02 0.0045 19.0 4.2 47 8-57 8-58 (91)
64 3jsy_A Acidic ribosomal protei 21.6 2.1E+02 0.0073 21.2 5.8 38 18-55 6-44 (213)
65 3emr_A ECTD; double stranded b 20.7 1.1E+02 0.0037 24.1 4.3 37 21-58 36-72 (310)
66 3e2v_A 3'-5'-exonuclease; stru 20.7 1.5E+02 0.0052 24.4 5.2 36 21-56 40-75 (401)
67 1h1j_S THO1 protein; SAP domai 20.7 1.2E+02 0.0041 17.0 3.2 29 21-52 10-38 (51)
68 3kan_A D-dopachrome tautomeras 20.6 95 0.0032 20.4 3.4 24 131-154 72-95 (117)
69 4dh4_A MIF; trimer, isomerase; 20.0 1E+02 0.0035 20.0 3.4 24 131-154 72-95 (114)
No 1
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15}
Probab=100.00 E-value=5.2e-53 Score=347.09 Aligned_cols=200 Identities=27% Similarity=0.386 Sum_probs=170.5
Q ss_pred CCCCCCCCeEeCCCc--chHHHHHHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhhccc-C-Ccccc
Q 028254 1 MTEALQLPVIDLSSP--DRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARK-E-HRGYT 76 (211)
Q Consensus 1 m~~~~~iP~IDl~~~--~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~-~-~~Gy~ 76 (211)
|+ +.+||||||+.. ++.+++++|.+||++||||||+||||+.++++++++.+++||+||.|+|+++... . ++||.
T Consensus 2 m~-~~~iPvIDls~~~~~~~~~~~~l~~A~~~~GFf~v~nHGi~~~~~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~Gy~ 80 (312)
T 3oox_A 2 MS-TSAIDPVSFSLYAKDFTRFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGYI 80 (312)
T ss_dssp ---CCSSCCEETHHHHHCHHHHHHHHHHHHHHHSEEEEESCCSCHHHHHHHHHHHHHHHTSCHHHHGGGBSSGGGTSEEE
T ss_pred CC-CCCCCeEEChHhcccHHHHHHHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHhhhccCCCCccccc
Confidence 55 678999999854 4567799999999999999999999999999999999999999999999999763 3 89999
Q ss_pred cccccccCCCCCCCCCcccccccCCCCC--C----CCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 028254 77 ALCDEILDPSSTSEGDPKESFYIGPLEG--T----LSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLN 150 (211)
Q Consensus 77 ~~~~e~~~~~~~~~~d~~E~~~~~~~~~--~----~~~~n~wP~~~~~~~f~~~~~~y~~~~~~l~~~ll~~la~~Lgl~ 150 (211)
+.+.+.... ....|++|+|+++.+.. . ...+|.||+ .+|+||+++++|+++|.+|+.+|+++|+++||++
T Consensus 81 ~~g~e~~~~--~~~~D~kE~~~~~~~~~~~~~~~~~~~~n~wP~--~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~ 156 (312)
T 3oox_A 81 PFGVETAKG--ADHYDLKEFWHMGRDLPPGHRFRAHMADNVWPA--EIPAFKHDVSWLYNSLDGMGGKVLEAIATYLKLE 156 (312)
T ss_dssp CCCCCCSTT--SCSCCCCEEEEECCCCCTTCGGGGTSCCCCCCT--TSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred cccceecCC--CCCCCceeeeEeecCCCcCCcchhccCCCCCCC--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 888776532 23689999999974221 1 125789997 5899999999999999999999999999999999
Q ss_pred hhhhhcccccCCCcccceeccCCCCCCCCCCCccccccccccCcceeEecCCCCCceee
Q 028254 151 EDFFEKVGALDAPMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDGVPGLQAC 209 (211)
Q Consensus 151 ~~~~~~~~~~~~~~~~lr~~~Yp~~~~~~~~~~~~~~~HtD~g~lTiL~qd~~~GLQV~ 209 (211)
+++|.+ .+..+.+.+|++|||||+.. +. .+|+++|||+|+||||+||+++||||+
T Consensus 157 ~~~f~~--~~~~~~~~lr~~~Ypp~~~~-~~-~~g~~~HtD~g~lTlL~qd~v~GLqV~ 211 (312)
T 3oox_A 157 RDFFKP--TVQDGNSVLRLLHYPPIPKD-AT-GVRAGAHGDINTITLLLGAEEGGLEVL 211 (312)
T ss_dssp TTTTHH--HHTTCCCEEEEEEECCCSSC-CC---CEEEECCCSSEEEEECCTTSCEEEE
T ss_pred HHHHHH--HhcCCcceeeeEecCCCCCC-cC-CcCccceecCceEEEEeEcCcCceEEE
Confidence 999986 55667789999999999864 23 399999999999999999999999996
No 2
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A*
Probab=100.00 E-value=1.3e-50 Score=337.99 Aligned_cols=196 Identities=23% Similarity=0.421 Sum_probs=166.7
Q ss_pred CCCCeEeCCCcc------hHHHHHHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhhccc---C-Ccc
Q 028254 5 LQLPVIDLSSPD------RLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARK---E-HRG 74 (211)
Q Consensus 5 ~~iP~IDl~~~~------~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~---~-~~G 74 (211)
.+||||||+... +.+++++|.+||++||||||+||||+.++++++++.+++||+||.|+|+++... . ++|
T Consensus 45 ~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFF~v~nHGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~G 124 (356)
T 1gp6_A 45 PQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQG 124 (356)
T ss_dssp CCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSE
T ss_pred CCCCEEEchhccCCChHHHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHHCCCHHHHHhhcccccccCccc
Confidence 369999998531 345789999999999999999999999999999999999999999999999753 2 788
Q ss_pred cccccccccCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhh
Q 028254 75 YTALCDEILDPSSTSEGDPKESFYIGPLEGTLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFF 154 (211)
Q Consensus 75 y~~~~~e~~~~~~~~~~d~~E~~~~~~~~~~~~~~n~wP~~~~~~~f~~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~ 154 (211)
|.+.+.+. ..+..||+|.|+++........+|.||. .+|+||+.+++|++.|.+|+.+||++|+++|||++++|
T Consensus 125 y~~~~~~~----~~~~~d~kE~~~~~~~p~~~~~~~~wP~--~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f 198 (356)
T 1gp6_A 125 YGSKLANN----ASGQLEWEDYFFHLAYPEEKRDLSIWPK--TPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRL 198 (356)
T ss_dssp EECCCCCS----TTCCCCSCEEEEEEEESGGGCCGGGSCC--SSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHH
T ss_pred cCcCcccC----CCCCCChhheeeeecCCccccccccCCC--cchhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 87664332 2346899999998732111125789997 68999999999999999999999999999999999999
Q ss_pred hcccccC---CCcccceeccCCCCCCCCCCCccccccccccCcceeEecCCCCCceeec
Q 028254 155 EKVGALD---APMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDGVPGLQACL 210 (211)
Q Consensus 155 ~~~~~~~---~~~~~lr~~~Yp~~~~~~~~~~~~~~~HtD~g~lTiL~qd~~~GLQV~~ 210 (211)
.+ .+. .+.+.||++|||||+. ++..+|+++|||+|+||||+||+++||||++
T Consensus 199 ~~--~~~~~~~~~~~lrl~~YPp~~~--~~~~~g~~~HtD~g~lTlL~qd~v~GLQV~~ 253 (356)
T 1gp6_A 199 EK--EVGGLEELLLQMKINYYPKCPQ--PELALGVEAHTDVSALTFILHNMVPGLQLFY 253 (356)
T ss_dssp HH--HTTHHHHCEEEEEEEEECCCSS--TTTCCSEEEECCCSSEEEEEECSCCCEEEEE
T ss_pred HH--HhcccCCccceeeeeecCCCCC--cccccCcCCccCCCeEEEEEEcCCCCeEEec
Confidence 86 444 4677899999999986 4567899999999999999999999999985
No 3
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X
Probab=100.00 E-value=2.8e-50 Score=331.21 Aligned_cols=189 Identities=25% Similarity=0.444 Sum_probs=163.2
Q ss_pred CCCeEeCCCc---chHHHHHHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhhcccCCcccccccccc
Q 028254 6 QLPVIDLSSP---DRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKEHRGYTALCDEI 82 (211)
Q Consensus 6 ~iP~IDl~~~---~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~Gy~~~~~e~ 82 (211)
+||||||+.. ++.+++++|.+||++||||||+||||+.++++++++.+++||+||.|+|+++... .+||.+.+.+.
T Consensus 3 ~iPvIDls~l~~~~~~~~~~~l~~A~~~~GFF~v~nHGi~~~l~~~~~~~~~~FF~lP~e~K~~~~~~-~~Gy~~~~~e~ 81 (319)
T 1w9y_A 3 NFPIISLDKVNGVERAATMEMIKDACENWGFFELVNHGIPREVMDTVEKMTKGHYKKCMEQRFKELVA-SKALEGVQAEV 81 (319)
T ss_dssp CCCEEEGGGGGSTTHHHHHHHHHHHHHHTSEEEEESCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHTTCCCCG
T ss_pred CCCEEECcccCcccHHHHHHHHHHHHHhCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHhhhccC-CCCCCcccccC
Confidence 6999999854 3567799999999999999999999999999999999999999999999998643 45887765432
Q ss_pred cCCCCCCCCCcccccccCC-CCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhcccccC
Q 028254 83 LDPSSTSEGDPKESFYIGP-LEGTLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFFEKVGALD 161 (211)
Q Consensus 83 ~~~~~~~~~d~~E~~~~~~-~~~~~~~~n~wP~~~~~~~f~~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~~~~~ 161 (211)
+..||+|.|+++. |. ..+|.||. .+|+||+.+++|++.|.+++.+|+++|+++||+++++|.+ .+.
T Consensus 82 ------~~~d~ke~~~~~~~p~---~~~~~wP~--~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~--~~~ 148 (319)
T 1w9y_A 82 ------TDMDWESTFFLKHLPI---SNISEVPD--LDEEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKN--AFY 148 (319)
T ss_dssp ------GGCCCCEEEEEEEESC---CGGGGCTT--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTHHHH--HHH
T ss_pred ------CCCChhhheeeecCCc---cccccccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH--Hhc
Confidence 3579999999873 22 14688997 5899999999999999999999999999999999999986 343
Q ss_pred ---CCcccceeccCCCCCCCCCCCccccccccccCcceeEecC-CCCCceeec
Q 028254 162 ---APMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATD-GVPGLQACL 210 (211)
Q Consensus 162 ---~~~~~lr~~~Yp~~~~~~~~~~~~~~~HtD~g~lTiL~qd-~~~GLQV~~ 210 (211)
.+.+.+|+||||||+. ++..+|+++|||+|+||||+|| +++||||++
T Consensus 149 ~~~~~~~~lrl~~YPp~~~--~~~~~g~~~HtD~g~lTlL~qd~~v~GLQV~~ 199 (319)
T 1w9y_A 149 GSKGPNFGTKVSNYPPCPK--PDLIKGLRAHTDAGGIILLFQDDKVSGLQLLK 199 (319)
T ss_dssp TTTCCEEEEEEEECCCCSC--GGGGSSCCCBCCSSSEEEEEESSSCCCEEEEE
T ss_pred CcCCccceeEEEecCCCcc--cccccccccccCCCceEEEEecCCCCeeeEee
Confidence 2557899999999986 4567899999999999999995 799999975
No 4
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ...
Probab=100.00 E-value=7.3e-49 Score=324.72 Aligned_cols=199 Identities=27% Similarity=0.430 Sum_probs=166.0
Q ss_pred CCC--CCCCCeEeCCCc------chHHHHHHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHh-hcCCHHHHhhhcccC
Q 028254 1 MTE--ALQLPVIDLSSP------DRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKF-FSLQLEDKMKLARKE 71 (211)
Q Consensus 1 m~~--~~~iP~IDl~~~------~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~f-F~lp~e~K~~~~~~~ 71 (211)
|++ ..+||||||+.. ++.+++++|.+||++||||||+|||| +++++++.+++| |+||.|+|+++..
T Consensus 1 m~s~~~~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFf~v~nHGi---l~~~~~~~~~~F~F~lP~eeK~~~~~-- 75 (331)
T 1odm_A 1 MGSVSKANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGI---NVQRLSQKTKEFHMSITPEEKWDLAI-- 75 (331)
T ss_dssp --CCCBCCCCEEECGGGGSSCHHHHHHHHHHHHHHHHTTSEEEEESCCC---CHHHHHHHHHHHHHHCCHHHHHHHBC--
T ss_pred CCcccCCCCCEEEchHhcCCChHHHHHHHHHHHHHHHhCCEEEEEccce---eHHHHHHHHHhccCCCCHHHHHhhhh--
Confidence 554 357999999853 23457899999999999999999999 999999999999 9999999999975
Q ss_pred CcccccccccccCCC----CCCCCCcccccccCCCCC-C---------CCCCCCCCCCCCchhHHHHHHHHHHHHHHHHH
Q 028254 72 HRGYTALCDEILDPS----STSEGDPKESFYIGPLEG-T---------LSSMNQWPSLEILPTWRSTMEYYHQKVLSAGR 137 (211)
Q Consensus 72 ~~Gy~~~~~e~~~~~----~~~~~d~~E~~~~~~~~~-~---------~~~~n~wP~~~~~~~f~~~~~~y~~~~~~l~~ 137 (211)
+||.+.+.+.+..+ ..+..||+|+|+++.... . ..++|.||..+.+|+||+++++|+++|.+|+.
T Consensus 76 -~Gy~~~~~e~~~~~~~~~~~~~~d~kE~~~~~~~~~~~~p~~~~~~~~~~~n~wP~~~~~p~fr~~~~~y~~~~~~l~~ 154 (331)
T 1odm_A 76 -RAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSS 154 (331)
T ss_dssp -TTTCTTCTTCSSSEEECCBTTTBCCEEEEECCTTCCTTSHHHHTTCTTCCCCCCCCTTTSTTHHHHHHHHHHHHHHHHH
T ss_pred -cCCCcCCccccccccccccCCCCChhheEecccCCccccccccccccccCCCCCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 79998887654321 013679999999984211 0 12579999843389999999999999999999
Q ss_pred HHHHHHHHHcCCChhhhhcccccCCCcccce--eccCC------C---CCCCCCCC-ccccccccccCcceeEecCCCCC
Q 028254 138 RLIHLIALALNLNEDFFEKVGALDAPMAFLR--LLHYP------G---ELVSSNQE-VCGASAHSDYGMITLLATDGVPG 205 (211)
Q Consensus 138 ~ll~~la~~Lgl~~~~~~~~~~~~~~~~~lr--~~~Yp------~---~~~~~~~~-~~~~~~HtD~g~lTiL~qd~~~G 205 (211)
.|+++|+++||+++++|.+ .++.+.+.+| ++||| | |+. ++. .+|+++|||+|+||||+||+++|
T Consensus 155 ~ll~~la~~Lgl~~~~f~~--~~~~~~~~lr~~l~~YP~~~~~~p~~~~~~--~~~~~~g~~~HtD~g~lTlL~qd~v~G 230 (331)
T 1odm_A 155 ALLKGYALALGKEENFFAR--HFKPDDTLASVVLIRYPYLDPYPEAAIKTA--ADGTKLSFEWHEDVSLITVLYQSNVQN 230 (331)
T ss_dssp HHHHHHHHHTTSCTTTTGG--GCCTTTCCCEEEEEEECCCSSCCGGGCEEC--TTSCEEEEEEECCSSSEEEEEECSSCC
T ss_pred HHHHHHHHHhCCCHHHHHH--HhcCcHHHHHHHHhhCCCcccccccccCCC--ccccccccccccCCCeEEEEeeCCCCC
Confidence 9999999999999999986 5666788999 99999 7 554 333 78999999999999999999999
Q ss_pred ceee
Q 028254 206 LQAC 209 (211)
Q Consensus 206 LQV~ 209 (211)
|||+
T Consensus 231 LQV~ 234 (331)
T 1odm_A 231 LQVE 234 (331)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9998
No 5
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A*
Probab=100.00 E-value=5.2e-49 Score=322.91 Aligned_cols=190 Identities=21% Similarity=0.302 Sum_probs=148.5
Q ss_pred CCCCeEeCCCcchHHHHHHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHhhcCC-HHHHhhhcccC---Ccccccccc
Q 028254 5 LQLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQ-LEDKMKLARKE---HRGYTALCD 80 (211)
Q Consensus 5 ~~iP~IDl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp-~e~K~~~~~~~---~~Gy~~~~~ 80 (211)
.+||||||+........++|.+||++||||||+||||+.++++++++++++||+|| .|+|+++.... ++||.+.+.
T Consensus 3 ~~iPvIDls~l~~~~~~~~l~~A~~~~GFf~l~nHGi~~~l~~~~~~~~~~fF~lP~~e~K~~~~~~~~~~~~Gy~~~~~ 82 (311)
T 1dcs_A 3 TTVPTFSLAELQQGLHQDEFRRCLRDKGLFYLTDCGLTDTELKSAKDLVIDFFEHGSEAEKRAVTSPVPTMRRGFTGLES 82 (311)
T ss_dssp CCCCEEEHHHHHTTCSHHHHHHHHHHTCEEEEESSSCCHHHHHHHHHHHHHHHHHCCHHHHHHTBCSSCCSSSEEEEC--
T ss_pred CCCcEEEchhhcCCCHHHHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHcCCcHHHhHHhhccCCCCCCceeeccc
Confidence 46999999843111112389999999999999999999999999999999999999 99999998643 799999887
Q ss_pred cccCC--CCCCCCCcccccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC----Chhhh
Q 028254 81 EILDP--SSTSEGDPKESFYIGPLEGTLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNL----NEDFF 154 (211)
Q Consensus 81 e~~~~--~~~~~~d~~E~~~~~~~~~~~~~~n~wP~~~~~~~f~~~~~~y~~~~~~l~~~ll~~la~~Lgl----~~~~~ 154 (211)
|.+.. ...+..||+|+|+++.. +|.|| +|+|++.+++|++.|.+|+..|+++|+++||+ ++++|
T Consensus 83 e~~~~~~~~~~~~d~~E~~~~~~~------~n~wP----~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~f 152 (311)
T 1dcs_A 83 ESTAQITNTGSYSDYSMCYSMGTA------DNLFP----SGDFERIWTQYFDRQYTASRAVAREVLRATGTEPDGGVEAF 152 (311)
T ss_dssp ---------------CEEEEECSS------SCCCS----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTCHHHH
T ss_pred cccccccCCCCCCCcceeeeccCC------CCCCC----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCcHhHH
Confidence 65410 11246899999999843 68899 68999999999999999999999999999999 88888
Q ss_pred hcccccCCCcccceeccCCCCCCCCCCC--ccccccccccCcceeEecC-CCCC---ceeec
Q 028254 155 EKVGALDAPMAFLRLLHYPGELVSSNQE--VCGASAHSDYGMITLLATD-GVPG---LQACL 210 (211)
Q Consensus 155 ~~~~~~~~~~~~lr~~~Yp~~~~~~~~~--~~~~~~HtD~g~lTiL~qd-~~~G---LQV~~ 210 (211)
.+ . .+.+|++|||||+.....+ .+|+++|||+|+||||+|| +++| |||++
T Consensus 153 ~~--~----~~~lrl~~YPp~~~~~~~~~~~~g~~~HtD~g~lTlL~qd~~v~G~~~LqV~~ 208 (311)
T 1dcs_A 153 LD--C----EPLLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEV 208 (311)
T ss_dssp HS--C----CCEEEEEEECC-----------CCEEEEEECSSEEEEEEECCTTCCCCEEEEE
T ss_pred hh--c----chhhheecCCCCCcccccCccccccccccCCCeEEEEecCCCCCCceeEEEEe
Confidence 85 2 6789999999997632123 6799999999999999998 8999 99985
No 6
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis}
Probab=100.00 E-value=6.3e-48 Score=312.07 Aligned_cols=185 Identities=27% Similarity=0.415 Sum_probs=150.4
Q ss_pred CCCCeEeCCCcchHHHHHHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhhcccC--Cccccccc-cc
Q 028254 5 LQLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKE--HRGYTALC-DE 81 (211)
Q Consensus 5 ~~iP~IDl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~--~~Gy~~~~-~e 81 (211)
++||||||+.++ .+++|.+||++||||||+|||||.++++++++.+++||++ |+|+++.... ++||.+.+ .|
T Consensus 2 ~~IPvIDls~~~---~~~~l~~A~~~~GFF~v~nHGi~~~li~~~~~~~~~FF~l--e~K~k~~~~~~~~~GY~~~~~~e 76 (280)
T 3on7_A 2 MKLETIDYRAAD---SAKRFVESLRETGFGVLSNHPIDKELVERIYTEWQAFFNS--EAKNEFMFNRETHDGFFPASISE 76 (280)
T ss_dssp --CCEEETTSTT---HHHHHHHHHHHHSEEEEESCSSCHHHHHHHHHHHHHHHTS--GGGGGGBCCTTTCCEEECCC---
T ss_pred CCCCEEECCChh---HHHHHHHHHHhCCEEEEECCCCCHHHHHHHHHHHHHHhhh--HHHHHhccCCCCCCccccCcccc
Confidence 369999998754 4789999999999999999999999999999999999998 7999987643 89999876 45
Q ss_pred ccCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh--hh---hhc
Q 028254 82 ILDPSSTSEGDPKESFYIGPLEGTLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNE--DF---FEK 156 (211)
Q Consensus 82 ~~~~~~~~~~d~~E~~~~~~~~~~~~~~n~wP~~~~~~~f~~~~~~y~~~~~~l~~~ll~~la~~Lgl~~--~~---~~~ 156 (211)
.... ....|++|.|++. .||. .+|+||+.+++|+++|.+++.+||++||++||++. ++ |.+
T Consensus 77 ~~~~--~~~~D~kE~~~~~----------p~~~--~p~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~~~~~ 142 (280)
T 3on7_A 77 TAKG--HTVKDIKEYYHVY----------PWGR--IPDSLRANILAYYEKANTLASELLEWIETYSPDEIKAKFSIPLPE 142 (280)
T ss_dssp -------CCCCSCEEEEEC----------TTSC--CCGGGHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHTTCSSCHHH
T ss_pred ccCC--CCcccHHHHHhcC----------CCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhhhHHHHH
Confidence 4322 2357999999864 2664 56899999999999999999999999999999863 32 232
Q ss_pred ccccCCC-cccceeccCCCCCCCCCCCccccccccccCcceeEecCCCCCceeec
Q 028254 157 VGALDAP-MAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDGVPGLQACL 210 (211)
Q Consensus 157 ~~~~~~~-~~~lr~~~Yp~~~~~~~~~~~~~~~HtD~g~lTiL~qd~~~GLQV~~ 210 (211)
.+..+ .+.+|++|||||+.......+|+++|||+|+||||+||+++||||++
T Consensus 143 --~~~~~~~~~lr~~~YP~~~~~~~~~~~g~~~HtD~g~lTlL~qd~~~GLqV~~ 195 (280)
T 3on7_A 143 --MIANSHKTLLRILHYPPMTGDEEMGAIRAAAHEDINLITVLPTANEPGLQVKA 195 (280)
T ss_dssp --HHTTCSSCEEEEEEECCCCTTCCCCSEEEEEECCCSSEEEEECCSCCCEEEEC
T ss_pred --HhcCCccceEEEEECCCCCCccccCcccccCCCCCCeEEEEEecCCCCeEEEc
Confidence 33344 47899999999986443467999999999999999999999999983
No 7
>2opi_A L-fuculose-1-phosphate aldolase; L-fuculose-1-phosphate aldolas structural genomics, PSI-2, protein structure initiative; 2.50A {Bacteroides thetaiotaomicron}
Probab=83.20 E-value=0.63 Score=35.14 Aligned_cols=36 Identities=31% Similarity=0.459 Sum_probs=30.9
Q ss_pred CCCeEeCCCcchHHHHHHHHHHHHhcCeEEEEecCC
Q 028254 6 QLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGV 41 (211)
Q Consensus 6 ~iP~IDl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi 41 (211)
.||++++..+...+.++.+.+++.+.-.+.|.|||+
T Consensus 125 ~v~~~~y~~~g~~~la~~i~~~l~~~~avll~nHG~ 160 (212)
T 2opi_A 125 EIPVIPYYRPGSPELAKAVVEAMLKHNSVLLTNHGQ 160 (212)
T ss_dssp CCCEECCCCTTCHHHHHHHHHHTSSCSEEEETTTEE
T ss_pred CeEEEcCCCCCcHHHHHHHHHHhccCCEEEEcCCCc
Confidence 699999987766677888999998888899999995
No 8
>1e4c_P L-fuculose 1-phosphate aldolase; aldolase (class II), bacterial L-fucose metabolism; 1.66A {Escherichia coli} SCOP: c.74.1.1 PDB: 1fua_A 2fua_A 3fua_A 4fua_A* 1dzv_P 1e4b_P 1e47_P* 1e48_P* 1dzz_P 1e46_P 1dzu_P 1dzy_P 1dzx_P 1dzw_P 1e49_P 1e4a_P
Probab=79.72 E-value=0.97 Score=34.18 Aligned_cols=36 Identities=14% Similarity=0.180 Sum_probs=30.6
Q ss_pred CCCeEeCCCcchHHHHHHHHHHHHhcCeEEEEecCC
Q 028254 6 QLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGV 41 (211)
Q Consensus 6 ~iP~IDl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi 41 (211)
.||++++..+...+.++.+.+++.+.-.+.|.|||+
T Consensus 122 ~ip~~~y~~~g~~~la~~i~~~l~~~~avll~nHG~ 157 (215)
T 1e4c_P 122 SIPCAPYATFGTRELSEHVALALKNRKATLLQHHGL 157 (215)
T ss_dssp CBCEECCCCTTCHHHHHHHHHHTSSCSEEEETTTEE
T ss_pred CcceeeCCCCCcHHHHHHHHHHhccCCEEEEcCCCc
Confidence 689999987766677888999998888899999995
No 9
>2fk5_A Fuculose-1-phosphate aldolase; class II aldolase, metal binding, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2flf_A
Probab=79.43 E-value=1.2 Score=33.39 Aligned_cols=36 Identities=22% Similarity=0.276 Sum_probs=30.4
Q ss_pred CCCeE-eCCCcchHHHHHHHHHHHHhcCeEEEEecCC
Q 028254 6 QLPVI-DLSSPDRLSTAKSIRQACIDYGFFYLVNHGV 41 (211)
Q Consensus 6 ~iP~I-Dl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi 41 (211)
.||++ ++..+...+.++.+.+++.+.-.+.|.|||+
T Consensus 117 ~ip~~~~y~~~g~~ela~~i~~~l~~~~avll~nHG~ 153 (200)
T 2fk5_A 117 EVPVLAPKTVSATEEAALSVAEALREHRACLLRGHGA 153 (200)
T ss_dssp CEEEECCSCCSSSHHHHHHHHHHHHHCSEEEETTTEE
T ss_pred CceEecCCCCCCcHHHHHHHHHHhCcCCEEEECCCCc
Confidence 68999 8877766677888999998888899999994
No 10
>2dbn_A Hypothetical protein YBIU; alpha/beta structure, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Escherichia coli} PDB: 2dbi_A 2csg_A*
Probab=79.32 E-value=0.79 Score=38.70 Aligned_cols=54 Identities=11% Similarity=0.078 Sum_probs=39.2
Q ss_pred CCCCCeEeCCCcchHHHHHHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHhhc
Q 028254 4 ALQLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFS 58 (211)
Q Consensus 4 ~~~iP~IDl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~ 58 (211)
..-||.||+++.....+.++..+.+++.|++.|.|. ||.+...+..+...+|.+
T Consensus 98 ~~~iP~i~f~di~~~~~s~~~~~~ir~rG~vVIRgv-vp~e~A~~~~~~~~~yl~ 151 (461)
T 2dbn_A 98 DAVWPVLSYADIKAGHVTAEQREQIKRRGCAVIKGH-FPREQALGWDQSMLDYLD 151 (461)
T ss_dssp CCSSCEEEHHHHHHTCCCHHHHHHHHHHSEEEEETS-SCHHHHHHHHHHHHHHHH
T ss_pred CCCcceecHHHhcCCCCCHHHHHHHHhccEEEECCC-CCHHHHHHHHHHHHHHHH
Confidence 357999999865332233556678889999987765 788888877777777764
No 11
>1pvt_A Sugar-phosphate aldolase; structural genomics, PSI, protein initiative, midwest center for structural genomics, MCSG; 2.50A {Thermotoga maritima} SCOP: c.74.1.1
Probab=77.05 E-value=1.3 Score=33.93 Aligned_cols=36 Identities=14% Similarity=0.239 Sum_probs=30.7
Q ss_pred CCCeEeCCCcchHHHHHHHHHHHHhcCeEEEEecCC
Q 028254 6 QLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGV 41 (211)
Q Consensus 6 ~iP~IDl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi 41 (211)
.||++++..+...+.++++.+++.+.-.+.+.|||+
T Consensus 161 ~v~~~~y~~~g~~ela~~i~~~l~~~~avll~nHG~ 196 (238)
T 1pvt_A 161 GISVVEFEKPGSVELGLKTVEKSEGKDAVLWDKHGV 196 (238)
T ss_dssp CCEEECCCSTTCHHHHHHHHHHTSSCSEEEETTSCE
T ss_pred CceEecCCCCCcHHHHHHHHHHhccCCEEEEcCCCc
Confidence 689999987766677888999998888899999995
No 12
>2v9l_A Rhamnulose-1-phosphate aldolase; entropy index, metal-binding, oligomerization, zinc, lyase, class II, cytoplasm; HET: PGO; 1.23A {Escherichia coli} PDB: 2uyv_A* 1ojr_A 2v9g_A* 1gt7_A* 2v9n_A* 2uyu_A* 2v9m_A* 2v9o_A 2v9e_A 2v9f_A 2v9i_A 2v29_A 2v2a_A* 2v2b_A
Probab=74.95 E-value=1.4 Score=34.71 Aligned_cols=36 Identities=14% Similarity=0.171 Sum_probs=31.1
Q ss_pred CCCeEeCCCcchHHHHHHHHHHHHhcCeEEEEecCC
Q 028254 6 QLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGV 41 (211)
Q Consensus 6 ~iP~IDl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi 41 (211)
.||++++..+...+.++.+.+++.+.-.+.+.|||+
T Consensus 179 ~v~v~~y~~~g~~ela~~i~~~l~~~~avll~nHG~ 214 (274)
T 2v9l_A 179 GVGILPWMVPGTDAIGQATAQEMQKHSLVLWPFHGV 214 (274)
T ss_dssp CEEECCCCCSSSHHHHHHHHHHHTTCSEEEETTTEE
T ss_pred ceeEecCCCCCCHHHHHHHHHHHccCCEEEEcCCCc
Confidence 689999987766677888999999888999999995
No 13
>1otj_A Alpha-ketoglutarate-dependent taurine dioxygenase; jelly roll motif, alpha ketoglutarate-dependent dioxygenase, oxidoreductase; 1.90A {Escherichia coli} SCOP: b.82.2.5 PDB: 1gqw_A* 1os7_A* 1gy9_A
Probab=72.93 E-value=3.1 Score=32.55 Aligned_cols=49 Identities=14% Similarity=0.197 Sum_probs=34.8
Q ss_pred CCCeEeCCCcchHHHHHHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHhh
Q 028254 6 QLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFF 57 (211)
Q Consensus 6 ~iP~IDl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF 57 (211)
+|+-||+++.-..+..++|.+++.++|++.+.+-.++.+. ..+.++.|=
T Consensus 17 ei~gvdl~~~l~~~~~~~l~~~l~~~Gvv~frg~~~~~~~---~~~~~~~~G 65 (283)
T 1otj_A 17 QISGADLTRPLSDNQFEQLYHAVLRHQVVFLRDQAITPQQ---QRALAQRFG 65 (283)
T ss_dssp EEESCCSSSCCCHHHHHHHHHHHHHHSEEEECSCCCCHHH---HHHHHHTTS
T ss_pred EEECCCcCccCCHHHHHHHHHHHHHCCEEEECCCCCCHHH---HHHHHHHhC
Confidence 4566677663334568899999999999999999887653 334555553
No 14
>3o2g_A Gamma-butyrobetaine dioxygenase; gamma-butyrobetaine hydroxylase, 2-OXOG dioxygenase 1, oxidoreductase, structural genomics; HET: OGA NM2; 1.78A {Homo sapiens} PDB: 3ms5_A* 3n6w_A
Probab=71.87 E-value=2.8 Score=34.64 Aligned_cols=51 Identities=18% Similarity=0.125 Sum_probs=38.7
Q ss_pred CCCeEeCCCc-chHHHHHHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHhhcC
Q 028254 6 QLPVIDLSSP-DRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSL 59 (211)
Q Consensus 6 ~iP~IDl~~~-~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~l 59 (211)
++|.||+++. ...+...++.+++.++|++.+.+-+++.+ ...+.++.|-.+
T Consensus 122 ~~~~~~~~~~l~~d~~~~~~~~~l~~~Gvv~frg~~~~~~---~~~~~a~~~G~l 173 (388)
T 3o2g_A 122 QLPTLDFEDVLRYDEHAYKWLSTLKKVGIVRLTGASDKPG---EVSKLGKRMGFL 173 (388)
T ss_dssp CCCEEEHHHHHHCHHHHHHHHHHHHHHSEEEEECCCSSTT---HHHHHHHHHSCC
T ss_pred CCCccCHHHHhcCHHHHHHHHHHHHhcCEEEEeCCCCCHH---HHHHHHHHhCCC
Confidence 6899999754 24566889999999999999999988754 444566666544
No 15
>2irp_A Putative aldolase class 2 protein AQ_1979; aldehyde, enzymatic mechanism; 2.40A {Aquifex aeolicus}
Probab=70.68 E-value=2.2 Score=31.89 Aligned_cols=35 Identities=17% Similarity=0.249 Sum_probs=27.9
Q ss_pred CCCeEeCCCcchHHHHHHHHHHHHhcC---eEEEEecCC
Q 028254 6 QLPVIDLSSPDRLSTAKSIRQACIDYG---FFYLVNHGV 41 (211)
Q Consensus 6 ~iP~IDl~~~~~~~~~~~l~~A~~~~G---ff~l~nhgi 41 (211)
.||++++. ++..+.++.+.+++.+.+ .+.|.|||+
T Consensus 139 ~vp~~~~~-~g~~~La~~i~~~l~~~~~~~avll~nHG~ 176 (208)
T 2irp_A 139 KIPIFPNE-QNIPLLAKEVENYFKTSEDKYGFLIRGHGL 176 (208)
T ss_dssp EEEEECCC-SCHHHHHHHHHHHHHHCSCCSCEEETTTEE
T ss_pred ceeeecCC-CCHHHHHHHHHHHHhcCCCceEEEEcCCCC
Confidence 68999885 555677888888998765 788999995
No 16
>1oih_A Putative alkylsulfatase ATSK; non-heme Fe(II) alphaketoglutarate dependent dioxygenase, jelly roll, oxidoreductase; 1.89A {Pseudomonas putida} SCOP: b.82.2.5 PDB: 1oii_A* 1oij_B* 1vz4_A 1vz5_A 1oik_A* 1oij_A* 1oij_C*
Probab=68.74 E-value=4.6 Score=31.90 Aligned_cols=49 Identities=12% Similarity=0.144 Sum_probs=35.0
Q ss_pred CCeEeCCCcchHHHHHHHHHHHHhcCeEEEEecC-CCHHHHHHHHHHHHHhhc
Q 028254 7 LPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHG-VEEELISQMFNESKKFFS 58 (211)
Q Consensus 7 iP~IDl~~~~~~~~~~~l~~A~~~~Gff~l~nhg-i~~~~~~~~~~~~~~fF~ 58 (211)
|+-||+++.-..+..++|.+++.++|++.+.+-. ++.+ ...+.++.|-.
T Consensus 28 i~gvdl~~~l~~~~~~~l~~~l~~~Gvv~fRg~~~l~~~---~~~~~~~~fG~ 77 (301)
T 1oih_A 28 IRGVKLSPDLDAATVEAIQAALVRHKVIFFRGQTHLDDQ---SQEGFAKLLGE 77 (301)
T ss_dssp EESCCCCTTCCHHHHHHHHHHHHHHSEEEECCCTTCCHH---HHHHHHHTTSC
T ss_pred EeCCCccccCCHHHHHHHHHHHHHCCEEEECCCCCCCHH---HHHHHHHHhCC
Confidence 5556776533345688999999999999999988 8853 44555566543
No 17
>3ocr_A Class II aldolase/adducin domain protein; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, lyase; 1.95A {Pseudomonas syringae PV}
Probab=65.66 E-value=3.3 Score=32.54 Aligned_cols=36 Identities=19% Similarity=0.213 Sum_probs=30.0
Q ss_pred CCCeEeCCCcc-hHHHHHHHHHHHHhcCeEEEEecCC
Q 028254 6 QLPVIDLSSPD-RLSTAKSIRQACIDYGFFYLVNHGV 41 (211)
Q Consensus 6 ~iP~IDl~~~~-~~~~~~~l~~A~~~~Gff~l~nhgi 41 (211)
.||++|+..+. ..+..+.|.+++.+.-.+.|.|||+
T Consensus 156 ~v~~~~y~~~~~~~el~~~i~~~l~~~~avlL~nHG~ 192 (273)
T 3ocr_A 156 RVAYHGYEGIALDLSERERLVADLGDKSVMILRNHGL 192 (273)
T ss_dssp TEEEECCCCSSCCHHHHHHHHHHHTTCSEEEETTTEE
T ss_pred CEEEECCCCCCCCHHHHHHHHHHhCcCCEEEEcCCce
Confidence 68999997654 5567888999999999999999995
No 18
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.63 E-value=7.3 Score=23.89 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=33.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhh
Q 028254 117 ILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFFE 155 (211)
Q Consensus 117 ~~~~f~~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~ 155 (211)
.+..-+..++.||..-.+-...-+..||..+||+.+...
T Consensus 12 ~~k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVr 50 (71)
T 2da7_A 12 PYKDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVK 50 (71)
T ss_dssp SSTHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHH
Confidence 356778999999999988888889999999999987544
No 19
>3pvj_A Alpha-ketoglutarate-dependent taurine dioxygenase; jelly roll motif, Fe(II) binding, oxidoreductas; 1.85A {Pseudomonas putida KT2440} SCOP: b.82.2.5 PDB: 3v15_A 3v17_A*
Probab=61.05 E-value=6.3 Score=30.85 Aligned_cols=50 Identities=20% Similarity=0.258 Sum_probs=36.5
Q ss_pred CCCeEeCCCcchHHHHHHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHhhc
Q 028254 6 QLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFS 58 (211)
Q Consensus 6 ~iP~IDl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~ 58 (211)
+|.=||++..-..+..++|.+|+.++|.+.+.+-.++.+ ...+.++.|=.
T Consensus 15 ei~gvdl~~~l~~~~~~~l~~~l~~~gvv~fR~q~l~~~---~~~~fa~~fG~ 64 (277)
T 3pvj_A 15 QISGVDISRDISAEERDAIEQALLQHQVLFLRDQPINPE---QQARFAARFGD 64 (277)
T ss_dssp EEESCCTTSCCCHHHHHHHHHHHHHHSEEEESSCCCCHH---HHHHHHGGGSC
T ss_pred EEeCCCccccCCHHHHHHHHHHHHHCCEEEECCCCCCHH---HHHHHHHHhCC
Confidence 456677876434566889999999999999999988764 33455666543
No 20
>1m5a_B Insulin B chain; alpha helices, beta sheets, 3(10) helices, disulphide bridge hormone-growth factor complex; 1.20A {Sus scrofa} SCOP: g.1.1.1 PDB: 1aph_B 1b18_B 1b19_B 1b2a_B 1b2b_B 1b2c_B 1b2d_B 1b2e_B 1b2f_B 1b2g_B 1bph_B 1cph_B 1dph_B 1b17_B 1mpj_B 1wav_B 1zni_B 2a3g_B 2bn1_B 2bn3_B ...
Probab=59.20 E-value=12 Score=18.77 Aligned_cols=19 Identities=26% Similarity=0.585 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhcCeEEE
Q 028254 18 LSTAKSIRQACIDYGFFYL 36 (211)
Q Consensus 18 ~~~~~~l~~A~~~~Gff~l 36 (211)
...++.|.-.|.+-||||-
T Consensus 9 s~LVdaL~~vCgdRGF~~~ 27 (30)
T 1m5a_B 9 SHLVEALYLVCGERGFFYT 27 (30)
T ss_dssp HHHHHHHHHHHGGGCEEEC
T ss_pred HHHHHHHHHHhccCccccC
Confidence 4567888899999999983
No 21
>3r1j_A Alpha-ketoglutarate-dependent taurine dioxygenase; ssgcid, oxidoreductase, structural genomics; 2.05A {Mycobacterium avium} SCOP: b.82.2.0 PDB: 3swt_A
Probab=58.01 E-value=10 Score=30.13 Aligned_cols=51 Identities=10% Similarity=0.168 Sum_probs=36.5
Q ss_pred CCCeEeCCCcchHHHHHHHHHHHHhcCeEEEEec-CCCHHHHHHHHHHHHHhhcC
Q 028254 6 QLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNH-GVEEELISQMFNESKKFFSL 59 (211)
Q Consensus 6 ~iP~IDl~~~~~~~~~~~l~~A~~~~Gff~l~nh-gi~~~~~~~~~~~~~~fF~l 59 (211)
+|+-||++..-..+..++|++|+.++|.+.+.+- .++.+ ...+.++.|=.+
T Consensus 21 ei~gvdl~~~L~d~~~~~l~~al~~~gvv~fR~q~~l~~~---~~~~fa~~fG~l 72 (301)
T 3r1j_A 21 RVDGVRLGGDLDDATVEQIRRALLTHKVIFFRHQHHLDDS---RQLEFARLLGTP 72 (301)
T ss_dssp EEESCCCSTTCCHHHHHHHHHHHHHHSEEEECCCTTCCHH---HHHHHHHHHSCB
T ss_pred eEeCCCccccCCHHHHHHHHHHHHHCCEEEECCCCCCCHH---HHHHHHHhcCCc
Confidence 4556777743345568899999999999999998 78775 334556666433
No 22
>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3
Probab=55.24 E-value=24 Score=26.82 Aligned_cols=41 Identities=24% Similarity=0.375 Sum_probs=26.0
Q ss_pred CeEeCCCcchHHHHHHHHHHHHhcCeEEEEec-CCCHHHHHHHHH
Q 028254 8 PVIDLSSPDRLSTAKSIRQACIDYGFFYLVNH-GVEEELISQMFN 51 (211)
Q Consensus 8 P~IDl~~~~~~~~~~~l~~A~~~~Gff~l~nh-gi~~~~~~~~~~ 51 (211)
-+|||+.|+. +....+.|.+.|.=.|++. |.+.+..+.+..
T Consensus 56 VvIDFT~P~a---~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~ 97 (228)
T 1vm6_A 56 VVIDFSSPEA---LPKTVDLCKKYRAGLVLGTTALKEEHLQMLRE 97 (228)
T ss_dssp EEEECSCGGG---HHHHHHHHHHHTCEEEECCCSCCHHHHHHHHH
T ss_pred EEEECCCHHH---HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHH
Confidence 4789987753 3445566667777777755 777665544444
No 23
>3m4r_A Uncharacterized protein; short chain dehydrogenase, class II aldolase, adducin head D carbohydrate metabolism, structural genomics; 2.00A {Thermoplasma acidophilum}
Probab=53.84 E-value=4.9 Score=30.45 Aligned_cols=34 Identities=21% Similarity=0.225 Sum_probs=27.5
Q ss_pred CCeEeCCCcchHHHHHHHHHHHHhc-CeEEEEecCC
Q 028254 7 LPVIDLSSPDRLSTAKSIRQACIDY-GFFYLVNHGV 41 (211)
Q Consensus 7 iP~IDl~~~~~~~~~~~l~~A~~~~-Gff~l~nhgi 41 (211)
||++++..+.. +.++++.+++.+. -.+.|.|||+
T Consensus 156 v~~~~y~~~g~-ela~~i~~~l~~~~~avlL~nHG~ 190 (222)
T 3m4r_A 156 VVVLPYIPPGF-TLAKEVMNCFKKGIDGIVLRKHGL 190 (222)
T ss_dssp EEEECCCCSSH-HHHHHHHHHCCTTCSEEEETTTEE
T ss_pred ceecCCcCCcH-HHHHHHHHHHhcCCCEEEECCCCC
Confidence 89999887665 6788899999754 6788999995
No 24
>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}
Probab=50.65 E-value=21 Score=27.31 Aligned_cols=40 Identities=5% Similarity=0.157 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHhh
Q 028254 18 LSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFF 57 (211)
Q Consensus 18 ~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF 57 (211)
.+..++|.++|++.++++--|-.+...++.++.+.+..+|
T Consensus 88 ~e~~~~l~~aa~~~~v~~a~N~S~Gv~l~~~~~~~aa~~l 127 (243)
T 3qy9_A 88 EKLLNKLDELSQNMPVFFSANMSYGVHALTKILAAAVPLL 127 (243)
T ss_dssp HHHHHHHHHHTTTSEEEECSSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCEEEECCccHHHHHHHHHHHHHHHhc
Confidence 3446778888888888888888777777777776666655
No 25
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=50.06 E-value=19 Score=20.39 Aligned_cols=25 Identities=4% Similarity=0.028 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHcCCChhhhh
Q 028254 131 KVLSAGRRLIHLIALALNLNEDFFE 155 (211)
Q Consensus 131 ~~~~l~~~ll~~la~~Lgl~~~~~~ 155 (211)
.-.+++..|.+++++.||.|++.+.
T Consensus 18 ~k~~l~~~l~~~l~~~lg~p~~~v~ 42 (63)
T 2x4k_A 18 QLKNLVSEVTDAVEKTTGANRQAIH 42 (63)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGCE
T ss_pred HHHHHHHHHHHHHHHHhCcCcccEE
Confidence 3567888999999999999987543
No 26
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=49.74 E-value=19 Score=28.46 Aligned_cols=17 Identities=18% Similarity=-0.097 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHcCCCh
Q 028254 135 AGRRLIHLIALALNLNE 151 (211)
Q Consensus 135 l~~~ll~~la~~Lgl~~ 151 (211)
.|..|.+.|+++++.+.
T Consensus 186 TA~~la~~i~~~~~~~~ 202 (288)
T 3ijp_A 186 TALLLGQAAAEGRNIML 202 (288)
T ss_dssp HHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHhCCCc
Confidence 46667778888888654
No 27
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=48.20 E-value=19 Score=28.14 Aligned_cols=16 Identities=19% Similarity=0.003 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHcCCC
Q 028254 135 AGRRLIHLIALALNLN 150 (211)
Q Consensus 135 l~~~ll~~la~~Lgl~ 150 (211)
.|..|.+.++++++.+
T Consensus 171 TA~~la~~i~~~~~~~ 186 (272)
T 4f3y_A 171 TALMMGETIAAATGRS 186 (272)
T ss_dssp HHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHhCcc
Confidence 4666777788888765
No 28
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=47.70 E-value=33 Score=26.16 Aligned_cols=40 Identities=18% Similarity=0.333 Sum_probs=31.1
Q ss_pred cchHHHHHHHHHHHHhcCeEEEEec-CCCHHHHHHHHHHHHH
Q 028254 15 PDRLSTAKSIRQACIDYGFFYLVNH-GVEEELISQMFNESKK 55 (211)
Q Consensus 15 ~~~~~~~~~l~~A~~~~Gff~l~nh-gi~~~~~~~~~~~~~~ 55 (211)
....++.+.+.+||.+.|| ++.-. ||+.+-++++.+.+.+
T Consensus 170 l~~l~E~~avAka~a~~g~-~lEPTGGIdl~N~~~I~~i~l~ 210 (249)
T 3m0z_A 170 LKHRAEFEAVAKACAAHDF-WLEPTGGIDLENYSEILKIALD 210 (249)
T ss_dssp TTTHHHHHHHHHHHHHTTC-EEEEBSSCCTTTHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCc-eECCCCCccHhhHHHHHHHHHH
Confidence 3457778899999999999 77776 6998777777766543
No 29
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=46.69 E-value=26 Score=20.05 Aligned_cols=24 Identities=17% Similarity=0.030 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHcCCChhhhh
Q 028254 132 VLSAGRRLIHLIALALNLNEDFFE 155 (211)
Q Consensus 132 ~~~l~~~ll~~la~~Lgl~~~~~~ 155 (211)
-.+++..|.+++++.||.++++..
T Consensus 17 k~~l~~~lt~~l~~~lg~~~~~v~ 40 (64)
T 3abf_A 17 KRELVRRLTEMASRLLGEPYEEVR 40 (64)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEE
T ss_pred HHHHHHHHHHHHHHHhCCCcccEE
Confidence 467888999999999999987543
No 30
>2z7b_A MLR6791 protein; class II aldolase superfamily, lyase; 1.90A {Mesorhizobium loti}
Probab=44.69 E-value=12 Score=29.26 Aligned_cols=36 Identities=17% Similarity=0.302 Sum_probs=27.8
Q ss_pred CCCeEeCCC---------cchHHHHHHHHHHHHhcCeEEEEecCC
Q 028254 6 QLPVIDLSS---------PDRLSTAKSIRQACIDYGFFYLVNHGV 41 (211)
Q Consensus 6 ~iP~IDl~~---------~~~~~~~~~l~~A~~~~Gff~l~nhgi 41 (211)
.||++++.. +...+.++.|.+++.+.-.+.|.|||+
T Consensus 157 ~vpv~~y~~~~g~~~~~~~~s~ela~~ia~~l~~~~avLL~nHG~ 201 (270)
T 2z7b_A 157 SVPVYEIRDKHGDETDLFGGSPDVCADIAESLGSQTVVLMARHGV 201 (270)
T ss_dssp CCCEECTHHHHCSCSCCCCCSHHHHHHHHHHHTTSSEEEETTTEE
T ss_pred CCceecccccCCcccccccCCHHHHHHHHHHhccCCEEEEcCCce
Confidence 589998641 124567888999998888899999995
No 31
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=44.25 E-value=36 Score=26.28 Aligned_cols=40 Identities=18% Similarity=0.352 Sum_probs=31.2
Q ss_pred cchHHHHHHHHHHHHhcCeEEEEec-CCCHHHHHHHHHHHHH
Q 028254 15 PDRLSTAKSIRQACIDYGFFYLVNH-GVEEELISQMFNESKK 55 (211)
Q Consensus 15 ~~~~~~~~~l~~A~~~~Gff~l~nh-gi~~~~~~~~~~~~~~ 55 (211)
....++.+.+.+||.+.|| ++.-. ||+.+-++++.+.+.+
T Consensus 193 l~~leEl~avAkAca~~g~-~lEPTGGIdl~Nf~~I~~i~l~ 233 (275)
T 3m6y_A 193 LAHEEEYRAVAKACAEEGF-ALEPTGGIDKENFETIVRIALE 233 (275)
T ss_dssp TTTHHHHHHHHHHHHHHTC-EEEEBSSCCTTTHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCc-eECCCCCccHhHHHHHHHHHHH
Confidence 3457778899999999999 77776 6998877777766543
No 32
>1nx8_A CARC, carbapenem synthase; jelly roll, unknown function; HET: AKG N7P; 2.30A {Pectobacterium carotovorum} SCOP: b.82.2.8 PDB: 1nx4_A*
Probab=43.95 E-value=5.9 Score=30.66 Aligned_cols=34 Identities=12% Similarity=0.271 Sum_probs=26.3
Q ss_pred HHHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHhh
Q 028254 21 AKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFF 57 (211)
Q Consensus 21 ~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF 57 (211)
.++|.+++.++|++.+.+-.++.+ ...+.++.|=
T Consensus 29 ~~~l~~~l~~~G~v~~rg~~~~~~---~~~~~~~~~G 62 (273)
T 1nx8_A 29 TETIKNLLMRQGFVVVKNLDIDSD---TFRDIYSAYG 62 (273)
T ss_dssp HHHHHHHHHHHCEEEECSCCCCHH---HHHHHHHTTS
T ss_pred HHHHHHHHHHCCEEEECCCCCCHH---HHHHHHHHhC
Confidence 788999999999999999888754 4445555554
No 33
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=41.53 E-value=31 Score=19.42 Aligned_cols=24 Identities=4% Similarity=0.014 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHcCCChhhh
Q 028254 131 KVLSAGRRLIHLIALALNLNEDFF 154 (211)
Q Consensus 131 ~~~~l~~~ll~~la~~Lgl~~~~~ 154 (211)
.-.+++..|.++++..||++++..
T Consensus 15 qk~~l~~~i~~~l~~~lg~~~~~v 38 (61)
T 2opa_A 15 QKRNLVEKVTEAVKETTGASEEKI 38 (61)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGC
T ss_pred HHHHHHHHHHHHHHHHhCcCcCeE
Confidence 446788899999999999997643
No 34
>2qt7_A Receptor-type tyrosine-protein phosphatase-like N; IA-2, ICA-512, protein-tyrosine phosphatase, transmembrane protein, diabetes, autoimmunity; 1.30A {Homo sapiens} PDB: 3n01_A 3np5_A 3ng8_A 3n4w_A
Probab=40.77 E-value=15 Score=23.62 Aligned_cols=34 Identities=18% Similarity=0.419 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHcCCChhhhhcccccCCCcccceec
Q 028254 136 GRRLIHLIALALNLNEDFFEKVGALDAPMAFLRLL 170 (211)
Q Consensus 136 ~~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~lr~~ 170 (211)
+.+||+.+++.|+++..+|.+. ....+.-++|+.
T Consensus 19 G~~l~~~la~ll~l~~~~Ft~i-~V~g~aVTFrV~ 52 (91)
T 2qt7_A 19 GVKLLEILAEHVHMSSGSFINI-SVVGPALTFRIR 52 (91)
T ss_dssp HHHHHHHHHHHHTSCGGGEEEE-EEETTEEEEEEC
T ss_pred HHHHHHHHHHHhcCCccceeee-EeecceEEEEec
Confidence 6789999999999999999862 334455566764
No 35
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=40.64 E-value=32 Score=19.39 Aligned_cols=24 Identities=13% Similarity=0.032 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHcCCChhhh
Q 028254 131 KVLSAGRRLIHLIALALNLNEDFF 154 (211)
Q Consensus 131 ~~~~l~~~ll~~la~~Lgl~~~~~ 154 (211)
.-.+++..|.+++.+.||++++..
T Consensus 15 ~k~~l~~~i~~~l~~~lg~p~~~v 38 (62)
T 1otf_A 15 QKETLIRQVSEAMANSLDAPLERV 38 (62)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGC
T ss_pred HHHHHHHHHHHHHHHHhCcCcccE
Confidence 446788899999999999997643
No 36
>3eat_X Pyoverdine biosynthesis protein PVCB; paerucumarin, Fe/alpha-ketoglutarate dependent hydroxylase, 2-isocyano-6,7-dihydroxycoumarin; 2.50A {Pseudomonas aeruginosa}
Probab=39.81 E-value=17 Score=28.57 Aligned_cols=48 Identities=8% Similarity=-0.043 Sum_probs=32.4
Q ss_pred CeEeCCCcchHHHHHHHHHHHHhcCeEEEEecC-C-CHHHHHHHHHHHHHhhc
Q 028254 8 PVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHG-V-EEELISQMFNESKKFFS 58 (211)
Q Consensus 8 P~IDl~~~~~~~~~~~l~~A~~~~Gff~l~nhg-i-~~~~~~~~~~~~~~fF~ 58 (211)
.=||++.+-..+..++|++++.++|++.+.+-. + +.+ ...+.++.|=.
T Consensus 32 ~gvdl~~~l~~~~~~~L~~~l~~~gvv~fRgq~~l~~~~---~~~~~a~~fG~ 81 (293)
T 3eat_X 32 EPGRPGMHVGELPAQWLKGLARSHHLLLLRGFAAFADAE---SLTRYCHDFGE 81 (293)
T ss_dssp EESSTTCBGGGSCHHHHHHHHHHHSEEEECSCBCCSSHH---HHHHHHHHHSC
T ss_pred ECCCCCcCcCHHHHHHHHHHHHHhCEEEECCCCCCCCHH---HHHHHHHHhCC
Confidence 335665432334578899999999999999987 5 543 45556666644
No 37
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=38.74 E-value=87 Score=23.84 Aligned_cols=44 Identities=27% Similarity=0.276 Sum_probs=29.9
Q ss_pred CeEeCCCcchHHHHHHHHHHHHhcCeEEEEec-CCCHHHHHHHHHHHH
Q 028254 8 PVIDLSSPDRLSTAKSIRQACIDYGFFYLVNH-GVEEELISQMFNESK 54 (211)
Q Consensus 8 P~IDl~~~~~~~~~~~l~~A~~~~Gff~l~nh-gi~~~~~~~~~~~~~ 54 (211)
-+||++.++. ..++..+|.+.|.=.|+.. |.+.+..+.+.++++
T Consensus 48 vvIDfT~p~a---~~~~~~~a~~~g~~~VigTTG~~~e~~~~l~~aa~ 92 (245)
T 1p9l_A 48 VVIDFTHPDV---VMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLV 92 (245)
T ss_dssp EEEECSCTTT---HHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHHH
T ss_pred EEEEccChHH---HHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHHHH
Confidence 4788887653 4556778888888777754 788776666555543
No 38
>2rdq_A 1-deoxypentalenic acid 11-beta hydroxylase; Fe(II ketoglutarate dependent hydroxylase...; double stranded barrel helix, dioxygenase; HET: AKG; 1.31A {Streptomyces avermitilis} PDB: 2rdn_A* 2rdr_A* 2rds_A*
Probab=38.56 E-value=40 Score=25.90 Aligned_cols=36 Identities=11% Similarity=0.335 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHhhc
Q 028254 22 KSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFS 58 (211)
Q Consensus 22 ~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~ 58 (211)
+++.+.+++.||+.|.|- ++.+.++++.+...++++
T Consensus 22 ~~~~~~f~~dGyvvl~~~-l~~e~v~~l~~~~~~~~~ 57 (288)
T 2rdq_A 22 AALDSFYEEHGYLFLRNV-LDRDLVKTVAEQMREGLV 57 (288)
T ss_dssp HHHHHHHHHHSEEEECSC-SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCEEEEeCC-CCHHHHHHHHHHHHHHHH
Confidence 457789999999998764 788999998888877643
No 39
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=37.36 E-value=22 Score=24.04 Aligned_cols=36 Identities=14% Similarity=0.204 Sum_probs=23.2
Q ss_pred eEeCCCcchHHHHHHHHHHHHhcCeEEEEecCCCHH
Q 028254 9 VIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVEEE 44 (211)
Q Consensus 9 ~IDl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~ 44 (211)
|||++.........+|.+.|+++|+..+--.|.+.+
T Consensus 51 VlDl~~l~~~~dl~~L~~~l~~~gl~~vGV~g~~~~ 86 (120)
T 3ghf_A 51 VINVSGLESPVNWPELHKIVTSTGLRIIGVSGCKDA 86 (120)
T ss_dssp EEEEEECCSSCCHHHHHHHHHTTTCEEEEEESCCCH
T ss_pred EEEccccCChHHHHHHHHHHHHcCCEEEEEeCCCcH
Confidence 557764321112567888999999988766665543
No 40
>4hti_A Receptor-type tyrosine-protein phosphatase N2; phogrin, IA-2BETA, protein-tyrosine phosphatase, transmembra protein, diabetes, autoimmunity; 1.95A {Homo sapiens} PDB: 4htj_A
Probab=37.30 E-value=22 Score=23.28 Aligned_cols=37 Identities=24% Similarity=0.362 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHcCCChhhhhcccccCCCcccceeccCC
Q 028254 136 GRRLIHLIALALNLNEDFFEKVGALDAPMAFLRLLHYP 173 (211)
Q Consensus 136 ~~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~lr~~~Yp 173 (211)
+.+|++.+|+.|+++.++|.+. ....+.-++|+.--+
T Consensus 26 G~~l~~~la~~l~l~~~~F~~i-sV~g~aVTFrV~~N~ 62 (99)
T 4hti_A 26 GRRLVEDVARLLQVPSSAFADV-EVLGPAVTFKVSANV 62 (99)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEE-EEETTEEEEEECCCT
T ss_pred HHHHHHHHHHHhCCchhheeee-eecCceEEEEeccCC
Confidence 6788999999999999998862 233454456665443
No 41
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str}
Probab=36.76 E-value=44 Score=25.03 Aligned_cols=18 Identities=17% Similarity=0.230 Sum_probs=13.7
Q ss_pred ecCCCHHHHHHHHHHHHH
Q 028254 38 NHGVEEELISQMFNESKK 55 (211)
Q Consensus 38 nhgi~~~~~~~~~~~~~~ 55 (211)
..=++++.++.+.+.++.
T Consensus 45 ~~fLs~~Ec~~Li~~a~~ 62 (216)
T 3itq_A 45 GNVLSDEECDELIELSKS 62 (216)
T ss_dssp ESCSCHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHhhc
Confidence 334788899999888864
No 42
>4f87_A Plycb; lysin, bacteriophage, antimicrobial protein, viral protein; 1.40A {Streptococcus phage C1} PDB: 4f88_A
Probab=35.27 E-value=27 Score=20.18 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=14.4
Q ss_pred CCCCeEeCCCcchHHHHHHHHHHHH
Q 028254 5 LQLPVIDLSSPDRLSTAKSIRQACI 29 (211)
Q Consensus 5 ~~iP~IDl~~~~~~~~~~~l~~A~~ 29 (211)
.-||.|+++..+ ++.|++|++
T Consensus 51 qiipsinisksd----veairkamk 71 (72)
T 4f87_A 51 QIIPSINISKSD----VEAIRKAMK 71 (72)
T ss_dssp TTSCEEECCGGG----HHHHHHHHC
T ss_pred HhCccccccHhH----HHHHHHHhc
Confidence 358999998765 455666654
No 43
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=34.13 E-value=47 Score=19.13 Aligned_cols=25 Identities=20% Similarity=0.146 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhhh
Q 028254 130 QKVLSAGRRLIHLIALALNLNEDFF 154 (211)
Q Consensus 130 ~~~~~l~~~ll~~la~~Lgl~~~~~ 154 (211)
+.-.+|+..|.+++.+.||++++..
T Consensus 14 eqk~~L~~~it~~~~~~lg~p~~~v 38 (65)
T 3ry0_A 14 QEVAALGEALTAAAHETLGTPVEAV 38 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCGGGC
T ss_pred HHHHHHHHHHHHHHHHHhCcCcccE
Confidence 3456888999999999999997643
No 44
>1v7z_A Creatininase, creatinine amidohydrolase; Mn-activated creatininase, substrate complex; 1.60A {Pseudomonas SP} SCOP: c.125.1.1 PDB: 1j2u_A 1j2t_A 3a6d_A 3a6j_A 3a6k_A 3a6l_A 3a6g_A 3a6f_A 3a6e_A 3a6h_A 1q3k_A
Probab=31.68 E-value=50 Score=25.39 Aligned_cols=34 Identities=15% Similarity=0.172 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhcC---eEEEEecCCCHHHHHHHHH
Q 028254 18 LSTAKSIRQACIDYG---FFYLVNHGVEEELISQMFN 51 (211)
Q Consensus 18 ~~~~~~l~~A~~~~G---ff~l~nhgi~~~~~~~~~~ 51 (211)
...+..|.+.+..+| ++.|.+||=....++.+.+
T Consensus 96 ~~~l~di~~sl~~~GfrrivivNgHGGN~~~l~~a~~ 132 (260)
T 1v7z_A 96 TGTVQDIIRELARHGARRLVLMNGHYENSMFIVEGID 132 (260)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEECSGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcCCCCcHHHHHHHHH
Confidence 456788899999999 6777889865555555444
No 45
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A
Probab=31.49 E-value=57 Score=24.19 Aligned_cols=22 Identities=9% Similarity=0.252 Sum_probs=14.5
Q ss_pred EEEEecCCCHHHHHHHHHHHHH
Q 028254 34 FYLVNHGVEEELISQMFNESKK 55 (211)
Q Consensus 34 f~l~nhgi~~~~~~~~~~~~~~ 55 (211)
+++...=++++.++.+.+.++.
T Consensus 22 i~~~~~fLs~~Ec~~li~~~~~ 43 (224)
T 2jig_A 22 AFLLKNFLSDEECDYIVEKARP 43 (224)
T ss_dssp EEEETTCSCHHHHHHHHHHHGG
T ss_pred EEEEcccCCHHHHHHHHHHhhc
Confidence 3444444678888888887754
No 46
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=31.42 E-value=55 Score=18.99 Aligned_cols=24 Identities=17% Similarity=0.081 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHcCCChhhh
Q 028254 131 KVLSAGRRLIHLIALALNLNEDFF 154 (211)
Q Consensus 131 ~~~~l~~~ll~~la~~Lgl~~~~~ 154 (211)
.-.+|+..|.++++..||++++..
T Consensus 18 qK~~l~~~lt~~l~~~lg~p~~~v 41 (67)
T 3m21_A 18 QKQQLIEGVSDLMVKVLNKNKASI 41 (67)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGC
T ss_pred HHHHHHHHHHHHHHHHHCcCcccE
Confidence 446788889999999999987643
No 47
>2j01_J 50S ribosomal protein L10; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_J 3d5b_J 3d5d_J 3i8i_Y 3kir_J 3kit_J 3kiw_J 3kiy_J 3mrz_I 3ms1_I 3pyt_I 3pyr_I 3pyo_I 3pyv_I
Probab=30.99 E-value=1.2e+02 Score=21.54 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhcC-eEEEEec-CCCHHHHHHHHHHHHH
Q 028254 18 LSTAKSIRQACIDYG-FFYLVNH-GVEEELISQMFNESKK 55 (211)
Q Consensus 18 ~~~~~~l~~A~~~~G-ff~l~nh-gi~~~~~~~~~~~~~~ 55 (211)
...+++|.+.+++.. .++|.++ |++...+.++....+.
T Consensus 7 ~~~v~el~~~l~~~~~~v~v~~~~gltv~~~~~LR~~lr~ 46 (173)
T 2j01_J 7 VELLATLKENLERAQGSFFLVNYQGLPAKETHALRQALKQ 46 (173)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEcCCCCHHHHHHHHHHHHH
Confidence 345888999999988 7776665 8998877777766553
No 48
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=30.58 E-value=55 Score=19.62 Aligned_cols=24 Identities=13% Similarity=0.149 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHcCCChhhh
Q 028254 131 KVLSAGRRLIHLIALALNLNEDFF 154 (211)
Q Consensus 131 ~~~~l~~~ll~~la~~Lgl~~~~~ 154 (211)
.-.+++..|.+++++.||++++..
T Consensus 16 qk~~L~~~l~~~l~~~lgip~~~v 39 (76)
T 1gyx_A 16 QKAALAADITDVIIRHLNSKDSSI 39 (76)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGC
T ss_pred HHHHHHHHHHHHHHHHhCcCCceE
Confidence 446888999999999999998744
No 49
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=30.49 E-value=55 Score=19.36 Aligned_cols=24 Identities=17% Similarity=0.050 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHcCCChhhh
Q 028254 131 KVLSAGRRLIHLIALALNLNEDFF 154 (211)
Q Consensus 131 ~~~~l~~~ll~~la~~Lgl~~~~~ 154 (211)
.-.+|+..|.+++++.||.+++..
T Consensus 16 qK~~L~~~it~~l~~~lg~p~~~v 39 (72)
T 3mb2_A 16 QKAELARALSAAAAAAFDVPLAEV 39 (72)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGE
T ss_pred HHHHHHHHHHHHHHHHhCCCcccE
Confidence 446888899999999999997654
No 50
>1zav_A 50S ribosomal protein L10; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: d.58.62.1 PDB: 1zaw_A 1zax_A
Probab=30.30 E-value=1.3e+02 Score=21.68 Aligned_cols=38 Identities=5% Similarity=0.124 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhcCeEEEEec-CCCHHHHHHHHHHHHH
Q 028254 18 LSTAKSIRQACIDYGFFYLVNH-GVEEELISQMFNESKK 55 (211)
Q Consensus 18 ~~~~~~l~~A~~~~Gff~l~nh-gi~~~~~~~~~~~~~~ 55 (211)
...+++|.+.+++...++|.++ |++...+.++....+.
T Consensus 9 ~~~v~el~~~l~~~~~v~v~~~~gltv~q~~~LR~~lr~ 47 (180)
T 1zav_A 9 ELIVKEMSEIFKKTSLILFADFLGFTVADLTELRSRLRE 47 (180)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCCHHHHHHHHHHHHh
Confidence 4568899999999999998876 8998888877776654
No 51
>2opw_A Phyhd1 protein; double-stranded beta helix, oxygenase, structural GE structural genomics consortium, SGC, oxidoreductase; 1.90A {Homo sapiens} PDB: 3obz_A*
Probab=30.04 E-value=58 Score=25.05 Aligned_cols=35 Identities=20% Similarity=0.159 Sum_probs=28.9
Q ss_pred HHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHhhc
Q 028254 23 SIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFS 58 (211)
Q Consensus 23 ~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~ 58 (211)
+..+.+++.||+.|.|- ++.+.++++.+...++++
T Consensus 7 e~~~~f~~dGyvvl~~~-l~~e~v~~l~~~~~~~~~ 41 (291)
T 2opw_A 7 SQLQKFQQDGFLVLEGF-LSAEECVAMQQRIGEIVA 41 (291)
T ss_dssp HHHHHHHHHSEEEETTS-SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEecCC-CCHHHHHHHHHHHHHHHh
Confidence 45678999999998764 789999999998888764
No 52
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=29.57 E-value=52 Score=18.83 Aligned_cols=24 Identities=17% Similarity=0.099 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHcCCChhhh
Q 028254 131 KVLSAGRRLIHLIALALNLNEDFF 154 (211)
Q Consensus 131 ~~~~l~~~ll~~la~~Lgl~~~~~ 154 (211)
.-.+|+..|.++++..||.+++..
T Consensus 14 qK~~L~~~it~~~~~~lg~~~~~v 37 (62)
T 3m20_A 14 KKREFVERLTSVAAEIYGMDRSAI 37 (62)
T ss_dssp HHHHHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHHHHHHHHHhCcCcceE
Confidence 346788889999999999987643
No 53
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=29.45 E-value=58 Score=18.72 Aligned_cols=31 Identities=23% Similarity=0.535 Sum_probs=23.8
Q ss_pred HHHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHH
Q 028254 21 AKSIRQACIDYGFFYLVNHGVEEELISQMFNESK 54 (211)
Q Consensus 21 ~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~ 54 (211)
+.+|.+.|+.+| |.-.|.-.++++++.....
T Consensus 15 V~eLK~~L~~rG---L~~~G~KaeLieRL~~~l~ 45 (55)
T 2do1_A 15 LAELKQECLARG---LETKGIKQDLIHRLQAYLE 45 (55)
T ss_dssp HHHHHHHHHHHT---CCCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CCCCCcHHHHHHHHHHHHh
Confidence 778999999999 4556777788888776543
No 54
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=29.01 E-value=87 Score=24.59 Aligned_cols=35 Identities=11% Similarity=0.052 Sum_probs=15.1
Q ss_pred HHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHh
Q 028254 22 KSIRQACIDYGFFYLVNHGVEEELISQMFNESKKF 56 (211)
Q Consensus 22 ~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~f 56 (211)
++|.++|++.++|+--|-.+...++.++.+.+.++
T Consensus 128 ~~L~~aa~~~~~~~a~N~SiGv~ll~~l~~~aa~~ 162 (288)
T 3ijp_A 128 AQIADFAKYTTIVKSGNMSLGVNLLANLVKRAAKA 162 (288)
T ss_dssp HHHHHHHTTSEEEECSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcCCEEEECCCcHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444444444433333
No 55
>1zpw_X Hypothetical protein TT1823; hyphotetical protein, structural genom NPPSFA, national project on protein structural and function analyses; 1.64A {Thermus thermophilus} SCOP: d.58.58.1
Probab=26.57 E-value=74 Score=20.07 Aligned_cols=47 Identities=11% Similarity=0.220 Sum_probs=30.2
Q ss_pred CCeEeCCCcchHHHHHHHHHHHHhcCeEEEEec----CCCHHHHHHHHHHHHHhh
Q 028254 7 LPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNH----GVEEELISQMFNESKKFF 57 (211)
Q Consensus 7 iP~IDl~~~~~~~~~~~l~~A~~~~Gff~l~nh----gi~~~~~~~~~~~~~~fF 57 (211)
|-+-|+++. +...++.+.|+++| ..+-+. -+++....++.+..+..-
T Consensus 7 lV~YDI~~~---kr~~kv~k~l~~yg-~rvQ~SVFe~~lt~~~~~~L~~~L~~~i 57 (90)
T 1zpw_X 7 AVAYDIPDD---TRRVKLANLLKSYG-ERVQLSVFECYLDERLLEDLRRRARRLL 57 (90)
T ss_dssp EEEEECCCH---HHHHHHHHHHHTTE-EEEETTEEEEEECHHHHHHHHHHHHHHC
T ss_pred EEEEeCCCh---HHHHHHHHHHHHhC-ccceEeEEEEEcCHHHHHHHHHHHHHhh
Confidence 444566543 44778999999999 566554 256666666666555543
No 56
>2a1x_A Phytanoyl-COA dioxygenase; beta jelly roll, double-stranded beta-helix, structural GENO structural genomics consortium, SGC, oxidoreductase; HET: AKG; 2.50A {Homo sapiens} SCOP: b.82.2.9
Probab=25.12 E-value=65 Score=25.05 Aligned_cols=36 Identities=25% Similarity=0.283 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHhhc
Q 028254 22 KSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFS 58 (211)
Q Consensus 22 ~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~ 58 (211)
++..+.+++.||+.|.|- ++.+.++++.+...++++
T Consensus 25 ~e~~~~f~~dGyvvl~~~-l~~e~v~~l~~~~~~~~~ 60 (308)
T 2a1x_A 25 LEQRKFYEENGFLVIKNL-VPDADIQRFRNEFEKICR 60 (308)
T ss_dssp STHHHHHHHHSEEEETTC-SCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCEEEccCC-CCHHHHHHHHHHHHHHHh
Confidence 345678899999998764 789999999988887765
No 57
>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3
Probab=24.62 E-value=81 Score=23.91 Aligned_cols=52 Identities=8% Similarity=0.103 Sum_probs=38.6
Q ss_pred CCCeEeCCCcchHHHHHHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHhh
Q 028254 6 QLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFF 57 (211)
Q Consensus 6 ~iP~IDl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF 57 (211)
.+|+|-=...-..+..++|.+++++.++++--|-.+...++.++.+.+.++|
T Consensus 77 g~~~ViGTTG~~~~~~~~l~~~a~~~~vv~apNfSlGvnll~~l~~~aA~~l 128 (228)
T 1vm6_A 77 RAGLVLGTTALKEEHLQMLRELSKEVPVVQAYNFSIGINVLKRFLSELVKVL 128 (228)
T ss_dssp TCEEEECCCSCCHHHHHHHHHHTTTSEEEECSCCCHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEeCCCCCHHHHHHHHHHHhhCCEEEeccccHHHHHHHHHHHHHHHhc
Confidence 4566654432223445778888999999999999888888888888877777
No 58
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=23.74 E-value=1e+02 Score=23.89 Aligned_cols=37 Identities=16% Similarity=0.234 Sum_probs=17.7
Q ss_pred HHHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHhh
Q 028254 21 AKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFF 57 (211)
Q Consensus 21 ~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF 57 (211)
.++|.++|++.+.++-.|-.+...++.++.+.+.++|
T Consensus 112 ~~~L~~aa~~~~vv~a~N~s~Gv~l~~~~~~~aa~~l 148 (272)
T 4f3y_A 112 KAQLRAAGEKIALVFSANMSVGVNVTMKLLEFAAKQF 148 (272)
T ss_dssp HHHHHHHTTTSEEEECSCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccCCEEEECCCCHHHHHHHHHHHHHHHhc
Confidence 3445555555555554454444444444444444444
No 59
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej3_A 1s0y_A 3ej7_A
Probab=23.63 E-value=89 Score=18.74 Aligned_cols=25 Identities=12% Similarity=0.113 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhhh
Q 028254 130 QKVLSAGRRLIHLIALALNLNEDFF 154 (211)
Q Consensus 130 ~~~~~l~~~ll~~la~~Lgl~~~~~ 154 (211)
+.-.+|+..|.++++..||++++..
T Consensus 15 eqK~~L~~~it~~l~~~lg~p~~~v 39 (76)
T 3ej9_A 15 EQKRALSAGLLRVISEATGEPRENI 39 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCGGGC
T ss_pred HHHHHHHHHHHHHHHHHHCcCcccE
Confidence 3456888899999999999997743
No 60
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...
Probab=23.17 E-value=80 Score=20.62 Aligned_cols=24 Identities=25% Similarity=0.202 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHcCCChhhh
Q 028254 131 KVLSAGRRLIHLIALALNLNEDFF 154 (211)
Q Consensus 131 ~~~~l~~~ll~~la~~Lgl~~~~~ 154 (211)
.-.+++..|.+.+.+.||++++.+
T Consensus 71 ~n~~~s~~i~~~l~~~Lgi~~~ri 94 (114)
T 3djh_A 71 QNRSYSKLLCGLLAERLRISPDRV 94 (114)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGE
T ss_pred HHHHHHHHHHHHHHHHhCcCcceE
Confidence 446778888889999999998754
No 61
>3no4_A Creatininase, creatinine amidohydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.00A {Nostoc punctiforme pcc 73102}
Probab=22.95 E-value=97 Score=24.01 Aligned_cols=35 Identities=17% Similarity=0.426 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhcCe---EEEEecCCCHHHHHHHHHH
Q 028254 18 LSTAKSIRQACIDYGF---FYLVNHGVEEELISQMFNE 52 (211)
Q Consensus 18 ~~~~~~l~~A~~~~Gf---f~l~nhgi~~~~~~~~~~~ 52 (211)
...+..|.+.+.++|| +.|.+||=....++.+.+.
T Consensus 105 ~~~l~di~~sl~~~G~~~iv~vNgHGGN~~~l~~a~~e 142 (267)
T 3no4_A 105 IQVVRDYVTCLAKAGFSKFYFINGHGGNIATLKAAFSE 142 (267)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEECCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEEECCcCcHHHHHHHHHH
Confidence 4557888899999997 6677888655555555543
No 62
>2nrk_A Hypothetical protein GRPB; UPF0157, PFAM04229, glutamate-rich protein, enterococcus FAE PSI-2, protein structure initiative; 1.65A {Enterococcus faecalis} SCOP: d.218.1.14
Probab=22.67 E-value=10 Score=27.48 Aligned_cols=36 Identities=17% Similarity=0.378 Sum_probs=22.4
Q ss_pred CCeEeCCC-cchHHHHHHHHHHHHhcCeEEEEecCCC
Q 028254 7 LPVIDLSS-PDRLSTAKSIRQACIDYGFFYLVNHGVE 42 (211)
Q Consensus 7 iP~IDl~~-~~~~~~~~~l~~A~~~~Gff~l~nhgi~ 42 (211)
=||||+-- .........+.+++...||.+..+.|++
T Consensus 51 KPIIDI~v~V~~~~~~~~~~~~L~~~Gy~~~~e~~~~ 87 (173)
T 2nrk_A 51 KPIIDFLVIVEEIEKVDLLQWEFERIGYEYMGEFGLS 87 (173)
T ss_dssp CSCEEEEEEESCSGGGGGGHHHHHHTTCEECTTTTST
T ss_pred CCeeEEEeccCCHHHHHHHHHHHHHCCCEECCCCCCC
Confidence 48999861 1111123446678889999887655665
No 63
>3exc_X Uncharacterized protein; ferredoxin fold, double split beta-alpha-beta fold, dimer, C aspartate, RNA'ASE, hydrolase; 2.25A {Sulfolobus solfataricus} SCOP: d.58.58.0
Probab=22.58 E-value=1.3e+02 Score=19.00 Aligned_cols=47 Identities=11% Similarity=0.174 Sum_probs=29.5
Q ss_pred CeEeCCCcchHHHHHHHHHHHHhcCeEEEEec----CCCHHHHHHHHHHHHHhh
Q 028254 8 PVIDLSSPDRLSTAKSIRQACIDYGFFYLVNH----GVEEELISQMFNESKKFF 57 (211)
Q Consensus 8 P~IDl~~~~~~~~~~~l~~A~~~~Gff~l~nh----gi~~~~~~~~~~~~~~fF 57 (211)
-+-|+++.. ...++.+.|+++||..+-+. -+++....++....+...
T Consensus 8 V~YDI~~~k---rr~kv~k~l~~yGl~rvQ~SVFe~~lt~~~~~~L~~~L~~~i 58 (91)
T 3exc_X 8 VVYDVSDDS---KRNKLANNLKKLGLERIQRSAFEGDMDSQRMKDLVRVVKLIV 58 (91)
T ss_dssp EEEECCSHH---HHHHHHHHHHHTTCEEEETTEEEEECC--CHHHHHHHHHHHS
T ss_pred EEEeCCCch---HHHHHHHHHHHhCCccceeeEEEEECCHHHHHHHHHHHHHhc
Confidence 345665432 35889999999998777654 266666666666555544
No 64
>3jsy_A Acidic ribosomal protein P0 homolog; ribonucleoprotein; 1.60A {Methanocaldococcus jannaschii}
Probab=21.57 E-value=2.1e+02 Score=21.15 Aligned_cols=38 Identities=8% Similarity=0.172 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhcCeEEEEec-CCCHHHHHHHHHHHHH
Q 028254 18 LSTAKSIRQACIDYGFFYLVNH-GVEEELISQMFNESKK 55 (211)
Q Consensus 18 ~~~~~~l~~A~~~~Gff~l~nh-gi~~~~~~~~~~~~~~ 55 (211)
.+.+++|.+.+.++..++|.+. |++...++++....|.
T Consensus 6 ~~~v~el~e~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~ 44 (213)
T 3jsy_A 6 IEEVKTLKGLIKSKPVVAIVDMMDVPAPQLQEIRDKIRD 44 (213)
T ss_dssp HHHHHHHHHHHHHSSEEEEEECCSCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhC
Confidence 3458889999988888887765 8988887777776653
No 65
>3emr_A ECTD; double stranded beta helix, oxidoreductase; HET: MSE; 1.85A {Virgibacillus salexigens}
Probab=20.73 E-value=1.1e+02 Score=24.05 Aligned_cols=37 Identities=16% Similarity=0.191 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHhhc
Q 028254 21 AKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFS 58 (211)
Q Consensus 21 ~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~ 58 (211)
.++-.+.+++.||+.|.|- ++.+.++++.+...++++
T Consensus 36 T~eqi~~f~~dGyvvi~~~-ls~eev~~lr~~i~~~~~ 72 (310)
T 3emr_A 36 TKEQLDSYEKNGFLQIKNF-FSEDEVIDMQKAIFELQD 72 (310)
T ss_dssp CHHHHHHHHHHSEEEETTC-SCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCEEEccCC-CCHHHHHHHHHHHHHHHh
Confidence 3445678999999888654 788889988888877654
No 66
>3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2, protein initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.50A {Saccharomyces cerevisiae}
Probab=20.68 E-value=1.5e+02 Score=24.42 Aligned_cols=36 Identities=3% Similarity=-0.132 Sum_probs=32.0
Q ss_pred HHHHHHHHHhcCeEEEEecCCCHHHHHHHHHHHHHh
Q 028254 21 AKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKF 56 (211)
Q Consensus 21 ~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~f 56 (211)
.+++.+.+++.|.-.++..|++.+...++.+++++|
T Consensus 40 ~~~vl~rA~~~GV~~ii~~g~~l~~s~~~~~La~~~ 75 (401)
T 3e2v_A 40 YVKLLERAAQRHVKNALVTGSSIAESQSAIELVSSV 75 (401)
T ss_dssp HHHHHHHHHHTTEEEEEECCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEEecCCHHHHHHHHHHHHHC
Confidence 566778888999999999999999999999999886
No 67
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=20.66 E-value=1.2e+02 Score=17.03 Aligned_cols=29 Identities=14% Similarity=0.351 Sum_probs=22.8
Q ss_pred HHHHHHHHHhcCeEEEEecCCCHHHHHHHHHH
Q 028254 21 AKSIRQACIDYGFFYLVNHGVEEELISQMFNE 52 (211)
Q Consensus 21 ~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~ 52 (211)
+.+|.+.|+..| |.-.|.-.++++++...
T Consensus 10 V~eLK~~Lk~RG---L~~~G~KadLieRL~~~ 38 (51)
T 1h1j_S 10 VVQLKDLLTKRN---LSVGGLKNELVQRLIKD 38 (51)
T ss_dssp HHHHHHHHHHTT---CCCCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CCCCCcHHHHHHHHHHH
Confidence 678899999999 45567778888888765
No 68
>3kan_A D-dopachrome tautomerase; immune response, cytokine, cytokine-inhibitor C; HET: RW1; 1.13A {Homo sapiens} SCOP: d.80.1.3 PDB: 1dpt_A* 3ker_A*
Probab=20.64 E-value=95 Score=20.44 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHcCCChhhh
Q 028254 131 KVLSAGRRLIHLIALALNLNEDFF 154 (211)
Q Consensus 131 ~~~~l~~~ll~~la~~Lgl~~~~~ 154 (211)
.-.+++..|.+.+.+.||++++.+
T Consensus 72 ~n~~~s~~i~~~l~~~Lgi~~~Ri 95 (117)
T 3kan_A 72 DNRSHSAHFFEFLTKELALGQDRI 95 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGE
T ss_pred HHHHHHHHHHHHHHHHhCcCcCeE
Confidence 345777888889999999998854
No 69
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=20.02 E-value=1e+02 Score=20.03 Aligned_cols=24 Identities=8% Similarity=-0.031 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHcCCChhhh
Q 028254 131 KVLSAGRRLIHLIALALNLNEDFF 154 (211)
Q Consensus 131 ~~~~l~~~ll~~la~~Lgl~~~~~ 154 (211)
.-.+++..|.+.|.+.||++++..
T Consensus 72 ~~~~l~~~i~~~l~~~Lgi~~~ri 95 (114)
T 4dh4_A 72 TNCKIAAALSAACERHLGVPKNRI 95 (114)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGE
T ss_pred HHHHHHHHHHHHHHHHhCcCcccE
Confidence 446778888889999999998753
Done!