Query 028256
Match_columns 211
No_of_seqs 148 out of 1188
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 08:41:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028256.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028256hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00730 conserved hypothetic 100.0 2.7E-55 5.9E-60 361.3 21.0 178 19-196 1-178 (178)
2 COG1611 Predicted Rossmann fol 100.0 4.6E-45 1E-49 306.4 20.0 185 14-199 10-198 (205)
3 TIGR00725 conserved hypothetic 100.0 3.1E-42 6.7E-47 279.1 19.1 157 18-193 1-158 (159)
4 PF03641 Lysine_decarbox: Poss 100.0 3.6E-39 7.8E-44 253.9 15.7 131 63-193 1-133 (133)
5 TIGR00732 dprA DNA protecting 99.7 2.1E-15 4.6E-20 128.1 16.7 155 19-192 45-219 (220)
6 PF02481 DNA_processg_A: DNA r 99.4 6.1E-12 1.3E-16 106.4 13.4 144 17-170 43-206 (212)
7 PRK10736 hypothetical protein; 99.3 8.9E-11 1.9E-15 106.7 16.8 157 19-194 108-284 (374)
8 COG0758 Smf Predicted Rossmann 99.1 2.9E-09 6.3E-14 96.1 15.4 125 19-152 112-255 (350)
9 PF12694 MoCo_carrier: Putativ 97.3 0.0055 1.2E-07 49.0 10.9 94 53-153 1-99 (145)
10 KOG3614 Ca2+/Mg2+-permeable ca 96.0 0.16 3.5E-06 52.9 13.7 175 19-197 119-357 (1381)
11 PF05014 Nuc_deoxyrib_tr: Nucl 95.8 0.025 5.5E-07 42.6 5.6 46 102-153 49-98 (113)
12 PF06908 DUF1273: Protein of u 95.4 0.96 2.1E-05 37.3 14.2 90 31-121 20-136 (177)
13 PF13528 Glyco_trans_1_3: Glyc 94.5 1.3 2.7E-05 38.4 13.3 123 49-195 192-316 (318)
14 PF11071 DUF2872: Protein of u 94.3 0.84 1.8E-05 36.1 10.1 71 105-194 63-137 (141)
15 TIGR01133 murG undecaprenyldip 93.7 4.3 9.2E-05 35.3 15.8 72 110-197 246-319 (348)
16 COG0707 MurG UDP-N-acetylgluco 93.1 5.2 0.00011 36.5 14.9 40 103-152 241-280 (357)
17 PRK13660 hypothetical protein; 92.8 4.9 0.00011 33.4 15.8 107 41-151 34-167 (182)
18 PF06258 Mito_fiss_Elm1: Mitoc 92.7 4.9 0.00011 35.9 13.9 78 111-197 225-309 (311)
19 PF10686 DUF2493: Protein of u 92.7 1.3 2.9E-05 31.0 8.2 63 19-84 4-67 (71)
20 TIGR03646 YtoQ_fam YtoQ family 92.6 2.3 5E-05 33.7 10.1 71 105-194 66-140 (144)
21 COG3660 Predicted nucleoside-d 92.5 6.3 0.00014 35.1 13.8 135 15-176 158-298 (329)
22 PLN02605 monogalactosyldiacylg 92.4 3.4 7.5E-05 37.2 12.7 71 107-197 275-345 (382)
23 PRK10565 putative carbohydrate 92.0 0.9 2E-05 43.3 8.8 99 49-154 254-356 (508)
24 PRK12446 undecaprenyldiphospho 91.4 9.1 0.0002 34.5 14.3 31 110-150 248-278 (352)
25 cd03785 GT1_MurG MurG is an N- 91.4 9 0.00019 33.3 15.5 76 106-197 244-322 (350)
26 PRK00025 lpxB lipid-A-disaccha 91.0 2.6 5.7E-05 37.4 10.3 31 109-150 256-286 (380)
27 PRK13609 diacylglycerol glucos 90.9 11 0.00024 33.5 15.0 71 106-197 265-336 (380)
28 cd03784 GT1_Gtf_like This fami 90.8 5.8 0.00012 35.5 12.4 70 110-196 300-369 (401)
29 PRK13608 diacylglycerol glucos 90.3 6.9 0.00015 35.5 12.6 72 106-197 265-336 (391)
30 TIGR03590 PseG pseudaminic aci 89.9 6.2 0.00013 34.3 11.5 36 106-152 233-268 (279)
31 PF04101 Glyco_tran_28_C: Glyc 88.7 1.3 2.9E-05 34.9 5.9 34 109-152 67-100 (167)
32 TIGR01426 MGT glycosyltransfer 87.8 11 0.00024 33.8 12.0 33 110-152 287-319 (392)
33 TIGR00215 lpxB lipid-A-disacch 87.5 19 0.00041 32.8 13.4 75 111-198 264-346 (385)
34 COG1010 CobJ Precorrin-3B meth 83.1 17 0.00036 31.6 10.1 113 37-153 60-196 (249)
35 COG0063 Predicted sugar kinase 82.5 13 0.00028 33.0 9.5 131 48-193 31-167 (284)
36 COG1597 LCB5 Sphingosine kinas 81.5 2.9 6.4E-05 37.1 5.1 46 38-84 46-92 (301)
37 COG3613 Nucleoside 2-deoxyribo 81.0 14 0.00031 30.4 8.5 43 105-153 59-107 (172)
38 PRK05749 3-deoxy-D-manno-octul 80.0 46 0.001 30.1 16.8 82 97-198 303-387 (425)
39 TIGR00661 MJ1255 conserved hyp 76.7 51 0.0011 28.8 13.5 104 50-171 189-293 (321)
40 TIGR00196 yjeF_cterm yjeF C-te 76.4 18 0.0004 31.1 8.5 45 106-154 84-128 (272)
41 PRK00861 putative lipid kinase 75.3 6 0.00013 34.6 5.2 44 39-84 46-90 (300)
42 cd03786 GT1_UDP-GlcNAc_2-Epime 75.2 56 0.0012 28.5 15.2 69 106-199 269-337 (363)
43 PRK09267 flavodoxin FldA; Vali 75.1 33 0.00071 27.2 9.1 27 18-47 1-27 (169)
44 COG2185 Sbm Methylmalonyl-CoA 74.6 9.2 0.0002 30.6 5.5 45 35-80 25-69 (143)
45 PRK13337 putative lipid kinase 74.2 8.2 0.00018 33.9 5.8 45 39-84 46-92 (304)
46 KOG3349 Predicted glycosyltran 74.1 45 0.00098 27.3 9.4 123 18-172 3-129 (170)
47 PRK08105 flavodoxin; Provision 73.6 4.6 0.0001 32.0 3.7 34 18-54 1-34 (149)
48 PRK00726 murG undecaprenyldiph 73.3 63 0.0014 28.3 15.2 78 103-197 241-322 (357)
49 COG1819 Glycosyl transferases, 73.2 27 0.00059 32.2 9.2 91 46-152 234-328 (406)
50 PRK09004 FMN-binding protein M 72.6 4.5 9.8E-05 31.9 3.4 34 18-54 1-34 (146)
51 PRK13055 putative lipid kinase 72.5 8.6 0.00019 34.4 5.6 44 39-83 48-93 (334)
52 TIGR03702 lip_kinase_YegS lipi 72.3 8.9 0.00019 33.5 5.5 44 39-83 41-88 (293)
53 PRK13054 lipid kinase; Reviewe 71.8 9.6 0.00021 33.4 5.6 43 40-83 46-92 (300)
54 PF01256 Carb_kinase: Carbohyd 71.5 22 0.00047 30.6 7.6 125 53-195 2-133 (242)
55 PF00781 DAGK_cat: Diacylglyce 71.1 6.2 0.00013 30.0 3.8 44 40-84 43-91 (130)
56 COG0240 GpsA Glycerol-3-phosph 71.0 83 0.0018 28.6 13.4 42 18-69 1-43 (329)
57 PF01182 Glucosamine_iso: Gluc 69.3 23 0.0005 29.2 7.1 86 111-197 17-111 (199)
58 COG0794 GutQ Predicted sugar p 68.0 69 0.0015 27.1 9.7 15 110-124 126-140 (202)
59 KOG2968 Predicted esterase of 67.7 3.4 7.3E-05 42.2 2.0 47 40-88 829-886 (1158)
60 PRK11914 diacylglycerol kinase 66.6 12 0.00027 32.7 5.2 44 38-83 52-96 (306)
61 cd03795 GT1_like_4 This family 66.5 32 0.00068 29.3 7.7 73 105-197 254-330 (357)
62 cd03820 GT1_amsD_like This fam 66.2 35 0.00076 28.2 7.7 72 106-197 244-317 (348)
63 PF14359 DUF4406: Domain of un 66.2 16 0.00034 26.8 4.9 38 105-148 50-90 (92)
64 COG1057 NadD Nicotinic acid mo 66.2 8.9 0.00019 32.2 4.0 41 17-57 1-42 (197)
65 cd01171 YXKO-related B.subtili 65.5 39 0.00085 28.5 8.0 41 111-155 74-114 (254)
66 COG1832 Predicted CoA-binding 65.3 13 0.00028 29.7 4.4 37 15-56 13-49 (140)
67 cd00411 Asparaginase Asparagin 65.2 18 0.0004 32.4 6.1 50 113-165 77-131 (323)
68 COG0716 FldA Flavodoxins [Ener 64.6 10 0.00022 29.8 3.9 33 18-53 1-33 (151)
69 KOG4022 Dihydropteridine reduc 64.5 48 0.001 27.7 7.8 70 49-125 3-83 (236)
70 COG3573 Predicted oxidoreducta 64.0 18 0.00039 33.6 5.7 83 51-141 141-244 (552)
71 PRK05723 flavodoxin; Provision 63.6 8.7 0.00019 30.6 3.4 33 19-54 1-33 (151)
72 PRK02645 ppnK inorganic polyph 63.6 12 0.00026 33.3 4.6 107 17-171 2-117 (305)
73 PF13607 Succ_CoA_lig: Succiny 63.4 39 0.00085 26.5 7.0 68 115-194 55-136 (138)
74 PRK09330 cell division protein 62.5 43 0.00093 31.0 8.1 54 61-122 114-167 (384)
75 PF09152 DUF1937: Domain of un 62.5 11 0.00023 29.2 3.5 39 106-150 71-114 (116)
76 cd06660 Aldo_ket_red Aldo-keto 62.4 97 0.0021 26.3 10.0 19 37-55 29-47 (285)
77 COG0163 UbiX 3-polyprenyl-4-hy 61.4 17 0.00036 30.5 4.6 80 115-194 81-169 (191)
78 PRK14569 D-alanyl-alanine synt 61.4 22 0.00047 31.1 5.8 38 18-55 3-40 (296)
79 PRK03708 ppnK inorganic polyph 61.4 22 0.00048 31.2 5.8 35 19-56 1-35 (277)
80 COG0703 AroK Shikimate kinase 61.2 36 0.00079 28.0 6.6 67 115-198 72-139 (172)
81 PRK02155 ppnK NAD(+)/NADH kina 61.0 48 0.001 29.3 7.9 61 16-80 3-93 (291)
82 TIGR00421 ubiX_pad polyprenyl 60.3 46 0.001 27.3 7.2 80 114-195 75-165 (181)
83 PRK00696 sucC succinyl-CoA syn 60.0 1.4E+02 0.003 27.2 13.8 71 115-196 311-384 (388)
84 PF00534 Glycos_transf_1: Glyc 60.0 48 0.001 25.4 7.0 72 105-197 83-156 (172)
85 PRK11914 diacylglycerol kinase 59.8 1.1E+02 0.0023 26.7 9.9 34 18-52 8-41 (306)
86 smart00046 DAGKc Diacylglycero 59.0 12 0.00027 28.4 3.4 40 118-160 52-93 (124)
87 PRK12361 hypothetical protein; 59.0 19 0.00042 34.4 5.4 43 39-83 286-329 (547)
88 PF01820 Dala_Dala_lig_N: D-al 59.0 11 0.00024 28.6 3.0 36 19-54 1-36 (117)
89 PRK03378 ppnK inorganic polyph 58.5 55 0.0012 29.0 7.8 61 16-80 3-93 (292)
90 PRK06756 flavodoxin; Provision 58.2 17 0.00038 28.1 4.2 33 18-53 1-33 (148)
91 TIGR00519 asnASE_I L-asparagin 57.8 28 0.0006 31.4 5.9 51 112-165 75-130 (336)
92 cd02191 FtsZ FtsZ is a GTPase 57.7 1.4E+02 0.003 26.6 10.2 110 1-122 32-154 (303)
93 cd00587 HCP_like The HCP famil 57.5 22 0.00048 31.1 5.0 151 16-193 92-257 (258)
94 cd03808 GT1_cap1E_like This fa 57.5 39 0.00085 28.1 6.5 70 109-197 258-327 (359)
95 cd03804 GT1_wbaZ_like This fam 57.5 51 0.0011 28.6 7.4 72 105-197 252-324 (351)
96 PRK15494 era GTPase Era; Provi 57.5 63 0.0014 29.0 8.2 91 112-206 129-224 (339)
97 cd02201 FtsZ_type1 FtsZ is a G 56.9 1.1E+02 0.0024 27.0 9.5 66 49-122 85-154 (304)
98 PRK06029 3-octaprenyl-4-hydrox 56.4 57 0.0012 27.0 7.1 80 114-194 78-167 (185)
99 PRK09922 UDP-D-galactose:(gluc 56.1 58 0.0013 28.7 7.6 73 105-198 248-323 (359)
100 PRK08185 hypothetical protein; 55.7 1.5E+02 0.0032 26.3 11.6 101 26-135 98-217 (283)
101 COG0300 DltE Short-chain dehyd 55.4 49 0.0011 29.0 6.9 60 18-85 6-65 (265)
102 PLN02958 diacylglycerol kinase 55.2 25 0.00054 33.4 5.3 44 39-83 157-207 (481)
103 PRK04539 ppnK inorganic polyph 55.2 58 0.0013 28.9 7.4 59 17-80 4-98 (296)
104 cd01400 6PGL 6PGL: 6-Phosphogl 54.9 65 0.0014 27.0 7.4 44 111-156 19-62 (219)
105 PF00861 Ribosomal_L18p: Ribos 54.6 48 0.001 25.3 6.0 41 36-76 70-118 (119)
106 PRK13057 putative lipid kinase 54.0 26 0.00057 30.3 5.0 42 39-83 40-82 (287)
107 TIGR02113 coaC_strep phosphopa 53.9 54 0.0012 26.8 6.5 84 113-196 75-176 (177)
108 cd07025 Peptidase_S66 LD-Carbo 53.9 1.1E+02 0.0023 26.7 8.9 42 105-147 48-94 (282)
109 PRK05835 fructose-bisphosphate 53.9 1.7E+02 0.0036 26.3 11.8 94 32-132 110-220 (307)
110 PF05159 Capsule_synth: Capsul 53.8 15 0.00032 31.5 3.4 38 109-158 194-231 (269)
111 TIGR02153 gatD_arch glutamyl-t 53.8 34 0.00074 31.8 5.9 49 115-165 140-193 (404)
112 cd07062 Peptidase_S66_mccF_lik 53.7 1.2E+02 0.0026 26.8 9.3 42 105-147 52-98 (308)
113 COG0528 PyrH Uridylate kinase 53.4 32 0.00069 29.9 5.2 36 31-68 25-62 (238)
114 TIGR00253 RNA_bind_YhbY putati 53.3 71 0.0015 23.6 6.5 55 142-198 14-69 (95)
115 PLN02275 transferase, transfer 53.0 1E+02 0.0022 27.5 8.8 70 106-196 298-370 (371)
116 cd03799 GT1_amsK_like This is 52.9 55 0.0012 27.8 6.8 73 106-197 247-325 (355)
117 PF13692 Glyco_trans_1_4: Glyc 52.9 43 0.00093 24.6 5.5 70 107-197 63-133 (135)
118 cd03825 GT1_wcfI_like This fam 52.5 73 0.0016 27.1 7.5 71 106-197 256-328 (365)
119 PRK06703 flavodoxin; Provision 51.9 20 0.00044 27.8 3.6 33 18-53 1-33 (151)
120 PRK07313 phosphopantothenoylcy 51.9 52 0.0011 27.0 6.2 88 111-198 74-179 (182)
121 PRK03372 ppnK inorganic polyph 51.7 86 0.0019 28.0 7.9 60 16-80 3-102 (306)
122 PRK14572 D-alanyl-alanine synt 51.7 30 0.00066 31.0 5.1 39 18-56 1-39 (347)
123 PRK12738 kbaY tagatose-bisphos 51.6 1.7E+02 0.0038 25.9 11.9 102 30-142 108-226 (286)
124 cd03822 GT1_ecORF704_like This 51.5 65 0.0014 27.2 7.0 70 106-198 259-333 (366)
125 cd02072 Glm_B12_BD B12 binding 51.5 1.1E+02 0.0025 23.8 9.2 40 40-80 17-56 (128)
126 PRK06973 nicotinic acid mononu 51.4 19 0.00041 31.1 3.6 40 13-52 16-55 (243)
127 PRK01231 ppnK inorganic polyph 51.2 79 0.0017 28.0 7.6 60 17-80 3-92 (295)
128 PF01116 F_bP_aldolase: Fructo 50.9 1.8E+02 0.0038 25.8 11.2 98 31-135 108-224 (287)
129 cd06259 YdcF-like YdcF-like. Y 50.6 89 0.0019 23.9 7.1 14 179-192 97-110 (150)
130 PRK04183 glutamyl-tRNA(Gln) am 50.4 43 0.00094 31.3 6.1 48 115-165 153-205 (419)
131 cd04949 GT1_gtfA_like This fam 50.4 48 0.001 28.9 6.1 68 111-198 275-344 (372)
132 cd04728 ThiG Thiazole synthase 50.4 1.7E+02 0.0038 25.5 10.9 103 17-136 92-195 (248)
133 CHL00200 trpA tryptophan synth 50.2 84 0.0018 27.4 7.5 40 127-170 75-119 (263)
134 TIGR00640 acid_CoA_mut_C methy 50.2 62 0.0013 25.1 6.1 45 35-80 15-59 (132)
135 cd03819 GT1_WavL_like This fam 50.1 71 0.0015 27.2 7.1 67 108-195 257-326 (355)
136 TIGR00147 lipid kinase, YegS/R 49.7 44 0.00095 28.9 5.7 38 46-84 53-92 (293)
137 PRK09271 flavodoxin; Provision 49.7 23 0.00051 28.0 3.7 31 20-53 2-32 (160)
138 PRK02649 ppnK inorganic polyph 49.6 79 0.0017 28.2 7.4 25 54-80 74-98 (305)
139 PRK14077 pnk inorganic polypho 49.5 70 0.0015 28.3 7.0 57 18-80 10-94 (287)
140 PRK07998 gatY putative fructos 49.2 1.9E+02 0.0041 25.6 11.1 99 32-142 110-223 (283)
141 PRK10343 RNA-binding protein Y 49.1 87 0.0019 23.3 6.4 55 142-198 16-71 (97)
142 PRK00089 era GTPase Era; Revie 49.1 1.3E+02 0.0029 25.8 8.7 89 111-205 81-178 (292)
143 TIGR00060 L18_bact ribosomal p 49.0 47 0.001 25.5 5.0 39 36-74 65-111 (114)
144 cd03801 GT1_YqgM_like This fam 49.0 78 0.0017 26.1 7.0 69 108-197 269-339 (374)
145 COG0206 FtsZ Cell division GTP 48.7 1.7E+02 0.0037 26.7 9.4 112 2-123 44-166 (338)
146 COG2085 Predicted dinucleotide 48.1 42 0.0009 28.6 5.1 52 18-80 1-52 (211)
147 TIGR00436 era GTP-binding prot 47.8 1.2E+02 0.0025 26.0 8.0 88 111-205 76-171 (270)
148 cd06353 PBP1_BmpA_Med_like Per 47.8 1E+02 0.0022 26.3 7.6 55 19-81 153-207 (258)
149 PRK02645 ppnK inorganic polyph 47.5 96 0.0021 27.5 7.6 29 50-80 59-87 (305)
150 TIGR03492 conserved hypothetic 47.2 2.3E+02 0.0049 25.9 14.1 35 109-154 291-325 (396)
151 TIGR03449 mycothiol_MshA UDP-N 47.0 80 0.0017 28.0 7.1 71 106-197 294-366 (405)
152 cd07227 Pat_Fungal_NTE1 Fungal 46.5 14 0.00031 32.3 2.1 30 41-72 1-30 (269)
153 COG1063 Tdh Threonine dehydrog 46.5 53 0.0011 29.5 5.8 29 50-80 170-199 (350)
154 PRK12359 flavodoxin FldB; Prov 46.4 53 0.0012 26.8 5.4 19 65-83 103-121 (172)
155 PF11834 DUF3354: Domain of un 46.3 46 0.001 23.2 4.3 33 116-154 19-51 (69)
156 PRK05568 flavodoxin; Provision 46.3 38 0.00082 25.8 4.3 32 18-52 1-32 (142)
157 TIGR02690 resist_ArsH arsenica 46.1 45 0.00098 28.4 5.1 40 13-53 21-60 (219)
158 PF02608 Bmp: Basic membrane p 46.1 65 0.0014 28.2 6.3 58 19-82 162-221 (306)
159 cd03807 GT1_WbnK_like This fam 45.9 58 0.0013 27.1 5.8 66 110-197 264-330 (365)
160 PRK15484 lipopolysaccharide 1, 45.8 85 0.0018 28.1 7.1 71 106-197 268-342 (380)
161 PRK09195 gatY tagatose-bisphos 45.8 2.2E+02 0.0047 25.3 11.7 100 32-142 110-226 (284)
162 PRK12737 gatY tagatose-bisphos 45.7 2.2E+02 0.0047 25.2 11.4 101 31-142 109-226 (284)
163 PRK00654 glgA glycogen synthas 45.5 2.5E+02 0.0054 25.9 14.8 72 109-196 351-425 (466)
164 smart00046 DAGKc Diacylglycero 45.5 44 0.00096 25.3 4.5 32 52-84 52-87 (124)
165 PHA03392 egt ecdysteroid UDP-g 45.5 2.8E+02 0.006 26.4 11.8 114 40-171 285-408 (507)
166 cd04951 GT1_WbdM_like This fam 45.3 51 0.0011 28.1 5.4 67 110-197 258-324 (360)
167 PRK04885 ppnK inorganic polyph 45.2 1.2E+02 0.0027 26.4 7.8 55 20-80 2-67 (265)
168 TIGR01198 pgl 6-phosphoglucono 45.1 1.5E+02 0.0032 25.1 8.1 78 112-195 25-113 (233)
169 COG0593 DnaA ATPase involved i 45.0 97 0.0021 29.0 7.4 103 37-149 96-213 (408)
170 cd07225 Pat_PNPLA6_PNPLA7 Pata 44.9 21 0.00046 31.7 3.0 31 40-72 5-35 (306)
171 PRK09461 ansA cytoplasmic aspa 44.8 64 0.0014 29.1 6.1 52 113-166 80-136 (335)
172 PRK11840 bifunctional sulfur c 44.5 2.5E+02 0.0053 25.6 10.8 103 17-137 166-270 (326)
173 cd03818 GT1_ExpC_like This fam 44.5 95 0.0021 27.7 7.2 71 106-197 292-364 (396)
174 PRK14568 vanB D-alanine--D-lac 44.5 41 0.00089 30.0 4.8 37 18-54 3-39 (343)
175 PRK14489 putative bifunctional 44.4 76 0.0017 28.8 6.6 33 17-53 204-236 (366)
176 PRK01372 ddl D-alanine--D-alan 44.2 40 0.00086 29.1 4.6 37 19-55 5-41 (304)
177 PRK14571 D-alanyl-alanine synt 44.1 47 0.001 28.8 5.0 35 20-54 2-36 (299)
178 cd05844 GT1_like_7 Glycosyltra 43.5 1.3E+02 0.0028 25.9 7.7 69 108-198 258-335 (367)
179 TIGR01501 MthylAspMutase methy 43.3 1.6E+02 0.0035 23.1 11.8 40 40-80 19-58 (134)
180 COG0252 AnsB L-asparaginase/ar 43.3 66 0.0014 29.4 6.0 34 116-152 102-135 (351)
181 cd03814 GT1_like_2 This family 43.2 72 0.0016 26.8 6.0 69 108-197 260-330 (364)
182 PF00781 DAGK_cat: Diacylglyce 42.8 30 0.00065 26.2 3.2 38 111-150 48-88 (130)
183 PRK01966 ddl D-alanyl-alanine 42.6 48 0.001 29.4 4.9 37 18-54 3-39 (333)
184 PF01113 DapB_N: Dihydrodipico 42.6 1.4E+02 0.0031 22.4 7.0 51 111-168 64-114 (124)
185 PRK09880 L-idonate 5-dehydroge 42.5 1.5E+02 0.0032 26.0 8.0 28 51-80 172-200 (343)
186 PF01985 CRS1_YhbY: CRS1 / Yhb 42.4 22 0.00048 25.4 2.3 58 139-198 11-69 (84)
187 PRK09536 btuD corrinoid ABC tr 42.4 1.6E+02 0.0034 27.3 8.4 33 102-134 326-358 (402)
188 cd03812 GT1_CapH_like This fam 42.3 83 0.0018 26.8 6.3 71 108-198 260-330 (358)
189 COG0549 ArcC Carbamate kinase 41.9 69 0.0015 28.8 5.6 29 96-124 207-235 (312)
190 PRK08862 short chain dehydroge 41.7 1.2E+02 0.0026 25.0 7.0 54 19-80 6-59 (227)
191 smart00870 Asparaginase Aspara 41.7 48 0.001 29.6 4.8 51 114-166 77-132 (323)
192 KOG4435 Predicted lipid kinase 41.5 1.7E+02 0.0036 27.8 8.2 60 97-160 96-157 (535)
193 cd04249 AAK_NAGK-NC AAK_NAGK-N 41.5 2.2E+02 0.0048 24.1 10.5 40 21-60 2-43 (252)
194 TIGR03451 mycoS_dep_FDH mycoth 41.5 2.1E+02 0.0045 25.2 8.8 30 50-81 178-208 (358)
195 PF13614 AAA_31: AAA domain; P 41.4 59 0.0013 24.8 4.7 32 19-53 1-32 (157)
196 COG2081 Predicted flavoprotein 41.2 21 0.00046 33.3 2.5 27 52-80 6-32 (408)
197 PRK08887 nicotinic acid mononu 41.2 35 0.00077 27.7 3.6 24 18-41 1-24 (174)
198 TIGR01754 flav_RNR ribonucleot 40.8 38 0.00083 26.0 3.6 31 20-53 2-32 (140)
199 PF04007 DUF354: Protein of un 40.7 1.3E+02 0.0029 27.2 7.5 63 111-196 245-307 (335)
200 PF12146 Hydrolase_4: Putative 40.4 49 0.0011 23.2 3.7 34 18-55 15-48 (79)
201 COG0394 Wzb Protein-tyrosine-p 40.2 1E+02 0.0022 24.2 5.9 53 18-74 2-58 (139)
202 cd00947 TBP_aldolase_IIB Tagat 40.2 2.6E+02 0.0057 24.6 12.2 105 28-142 101-220 (276)
203 PLN02871 UDP-sulfoquinovose:DA 40.0 1.3E+02 0.0027 27.8 7.5 74 106-197 323-398 (465)
204 COG0703 AroK Shikimate kinase 40.0 81 0.0018 25.9 5.5 82 42-125 65-155 (172)
205 PF09314 DUF1972: Domain of un 39.9 59 0.0013 27.0 4.7 36 18-53 1-37 (185)
206 cd03798 GT1_wlbH_like This fam 39.8 1.1E+02 0.0024 25.3 6.6 72 106-198 270-343 (377)
207 PRK14138 NAD-dependent deacety 39.7 50 0.0011 28.3 4.5 71 105-197 169-241 (244)
208 PRK08610 fructose-bisphosphate 39.6 2.7E+02 0.0059 24.7 11.9 101 31-142 112-227 (286)
209 PF04016 DUF364: Domain of unk 39.5 36 0.00078 26.9 3.3 75 105-195 53-130 (147)
210 PRK06703 flavodoxin; Provision 39.4 75 0.0016 24.5 5.1 14 66-79 105-118 (151)
211 PRK06015 keto-hydroxyglutarate 39.4 1.4E+02 0.003 25.1 6.9 107 18-136 4-115 (201)
212 KOG0330 ATP-dependent RNA heli 39.1 79 0.0017 29.8 5.7 77 118-209 160-244 (476)
213 PRK09355 hydroxyethylthiazole 39.1 1.5E+02 0.0032 25.5 7.4 41 111-155 51-94 (263)
214 cd03800 GT1_Sucrose_synthase T 39.1 89 0.0019 27.1 6.1 69 108-197 296-366 (398)
215 cd03823 GT1_ExpE7_like This fa 39.0 1.4E+02 0.003 25.0 7.0 72 106-198 254-328 (359)
216 TIGR01182 eda Entner-Doudoroff 38.9 2E+02 0.0043 24.2 7.8 107 18-136 8-119 (204)
217 cd01408 SIRT1 SIRT1: Eukaryoti 38.8 1E+02 0.0022 26.3 6.1 70 105-193 166-235 (235)
218 cd04180 UGPase_euk_like Eukary 38.7 1.4E+02 0.003 25.9 7.1 69 117-197 2-76 (266)
219 cd03805 GT1_ALG2_like This fam 38.7 1.4E+02 0.0031 26.0 7.4 68 108-197 293-362 (392)
220 KOG0832 Mitochondrial/chloropl 38.6 95 0.0021 27.0 5.8 47 32-78 90-136 (251)
221 COG3967 DltE Short-chain dehyd 38.6 38 0.00081 29.3 3.3 25 53-78 9-33 (245)
222 PRK07308 flavodoxin; Validated 38.5 43 0.00094 25.8 3.6 29 20-51 3-31 (146)
223 PRK05333 NAD-dependent deacety 38.3 42 0.00091 29.4 3.8 71 105-197 205-277 (285)
224 TIGR01205 D_ala_D_alaTIGR D-al 38.3 43 0.00093 29.0 3.9 38 20-57 1-38 (315)
225 PF03358 FMN_red: NADPH-depend 38.2 72 0.0016 24.4 4.8 34 19-53 1-34 (152)
226 PF03205 MobB: Molybdopterin g 37.8 83 0.0018 24.5 5.1 58 19-81 1-64 (140)
227 cd03816 GT1_ALG1_like This fam 37.8 1.8E+02 0.0039 26.4 8.0 72 106-198 306-380 (415)
228 PRK03708 ppnK inorganic polyph 37.7 1.6E+02 0.0036 25.7 7.4 28 50-80 59-86 (277)
229 PRK15427 colanic acid biosynth 37.5 1.5E+02 0.0034 26.9 7.6 71 108-197 292-368 (406)
230 cd00453 FTBP_aldolase_II Fruct 37.5 3.3E+02 0.0071 25.0 12.0 106 23-135 125-261 (340)
231 PF00106 adh_short: short chai 37.4 54 0.0012 25.0 4.0 28 52-80 3-30 (167)
232 PRK07709 fructose-bisphosphate 37.3 3E+02 0.0064 24.4 12.0 101 32-142 113-227 (285)
233 PRK06806 fructose-bisphosphate 37.2 2.9E+02 0.0063 24.3 12.4 98 30-135 108-220 (281)
234 PRK13059 putative lipid kinase 37.1 1.4E+02 0.003 26.0 6.9 42 114-160 56-97 (295)
235 TIGR01858 tag_bisphos_ald clas 36.9 3E+02 0.0065 24.3 11.3 106 26-142 102-224 (282)
236 PRK13059 putative lipid kinase 36.8 76 0.0016 27.7 5.2 39 44-83 50-90 (295)
237 PRK13937 phosphoheptose isomer 36.6 95 0.0021 25.2 5.5 31 32-62 21-51 (188)
238 COG0150 PurM Phosphoribosylami 36.5 2.3E+02 0.0051 25.9 8.2 93 37-133 114-222 (345)
239 TIGR00236 wecB UDP-N-acetylglu 36.4 1.6E+02 0.0035 25.9 7.4 65 107-197 267-332 (365)
240 PF14947 HTH_45: Winged helix- 36.4 41 0.00088 23.5 2.8 41 156-197 33-73 (77)
241 PRK01231 ppnK inorganic polyph 36.2 1.1E+02 0.0023 27.2 6.1 34 114-153 62-95 (295)
242 PF00710 Asparaginase: Asparag 36.0 92 0.002 27.7 5.7 38 113-152 71-108 (313)
243 KOG4175 Tryptophan synthase al 36.0 75 0.0016 27.3 4.7 33 127-162 78-110 (268)
244 KOG1584 Sulfotransferase [Gene 36.0 74 0.0016 28.5 5.0 57 123-197 152-213 (297)
245 PTZ00032 60S ribosomal protein 36.0 86 0.0019 26.7 5.0 39 36-74 162-208 (211)
246 PRK02261 methylaspartate mutas 36.0 2.1E+02 0.0045 22.3 12.7 40 40-80 21-60 (137)
247 KOG2467 Glycine/serine hydroxy 35.9 62 0.0013 30.3 4.5 36 38-73 329-374 (477)
248 COG0256 RplR Ribosomal protein 35.7 1.2E+02 0.0026 23.7 5.5 40 36-75 76-123 (125)
249 PF13380 CoA_binding_2: CoA bi 35.6 72 0.0016 24.0 4.3 31 19-54 1-31 (116)
250 PRK14075 pnk inorganic polypho 35.3 1.4E+02 0.003 25.8 6.5 53 19-81 1-69 (256)
251 COG1763 MobB Molybdopterin-gua 35.2 90 0.0019 25.3 5.0 33 18-54 2-34 (161)
252 PF12965 DUF3854: Domain of un 35.2 1.9E+02 0.0041 22.4 6.7 50 18-68 68-124 (130)
253 cd03802 GT1_AviGT4_like This f 35.1 1.8E+02 0.0039 24.4 7.2 40 108-155 237-279 (335)
254 TIGR01753 flav_short flavodoxi 35.1 96 0.0021 23.1 5.0 13 67-79 103-115 (140)
255 KOG1201 Hydroxysteroid 17-beta 34.6 47 0.001 29.8 3.5 26 49-75 38-63 (300)
256 PRK02649 ppnK inorganic polyph 34.5 89 0.0019 27.9 5.3 118 18-171 1-126 (305)
257 cd00578 L-fuc_L-ara-isomerases 34.5 3.8E+02 0.0082 24.8 12.1 36 113-153 62-97 (452)
258 PRK14106 murD UDP-N-acetylmura 34.2 1.1E+02 0.0023 28.1 6.0 13 112-124 66-78 (450)
259 COG1582 FlgEa Uncharacterized 34.2 34 0.00074 23.7 2.0 24 176-199 34-57 (67)
260 COG2984 ABC-type uncharacteriz 34.0 3.4E+02 0.0073 24.7 8.8 64 14-80 155-218 (322)
261 cd00458 SugarP_isomerase Sugar 33.9 2.4E+02 0.0053 22.4 8.7 44 112-156 17-60 (169)
262 PF12831 FAD_oxidored: FAD dep 33.9 34 0.00073 31.6 2.6 29 52-82 2-30 (428)
263 TIGR03282 methan_mark_13 putat 33.4 1.4E+02 0.0031 27.3 6.4 69 51-131 53-122 (352)
264 PRK00861 putative lipid kinase 33.4 1.8E+02 0.0039 25.2 7.1 30 115-150 58-87 (300)
265 cd04197 eIF-2B_epsilon_N The N 33.4 1E+02 0.0022 25.2 5.2 62 118-196 3-67 (217)
266 KOG3974 Predicted sugar kinase 33.1 3.1E+02 0.0068 24.5 8.2 49 106-157 93-144 (306)
267 PF04127 DFP: DNA / pantothena 32.7 2.8E+02 0.0061 22.8 8.4 66 51-121 20-89 (185)
268 PRK14076 pnk inorganic polypho 32.2 2.3E+02 0.005 27.4 8.1 64 13-80 285-378 (569)
269 PF04230 PS_pyruv_trans: Polys 32.2 63 0.0014 26.2 3.8 41 113-153 62-108 (286)
270 PF03492 Methyltransf_7: SAM d 32.1 52 0.0011 29.6 3.5 54 154-207 198-255 (334)
271 PF09848 DUF2075: Uncharacteri 32.0 3.7E+02 0.008 24.0 14.1 87 110-198 113-215 (352)
272 COG0159 TrpA Tryptophan syntha 32.0 2.2E+02 0.0049 25.0 7.3 60 127-195 77-141 (265)
273 PRK05569 flavodoxin; Provision 31.9 67 0.0015 24.4 3.6 29 143-171 82-112 (141)
274 TIGR01007 eps_fam capsular exo 31.7 1.2E+02 0.0026 24.4 5.4 36 16-54 15-50 (204)
275 PRK14077 pnk inorganic polypho 31.6 1.2E+02 0.0026 26.8 5.5 52 114-171 64-122 (287)
276 PRK12857 fructose-1,6-bisphosp 31.5 3.7E+02 0.008 23.8 11.9 111 19-142 99-226 (284)
277 PRK06443 chorismate mutase; Va 31.4 82 0.0018 26.1 4.2 41 35-79 92-132 (177)
278 TIGR03702 lip_kinase_YegS lipi 31.1 1.4E+02 0.003 25.9 5.9 31 118-150 55-86 (293)
279 TIGR00642 mmCoA_mut_beta methy 31.0 1.3E+02 0.0029 29.6 6.2 46 16-65 544-589 (619)
280 PRK07454 short chain dehydroge 30.8 2.6E+02 0.0056 22.6 7.3 34 16-57 4-37 (241)
281 PF13407 Peripla_BP_4: Peripla 30.8 1.2E+02 0.0027 24.7 5.4 39 110-153 51-89 (257)
282 TIGR01016 sucCoAbeta succinyl- 30.8 4.1E+02 0.0088 24.1 12.9 70 115-195 311-383 (386)
283 cd04962 GT1_like_5 This family 30.7 1.6E+02 0.0035 25.3 6.3 68 109-197 265-334 (371)
284 cd03811 GT1_WabH_like This fam 30.7 1.7E+02 0.0036 24.1 6.1 35 111-153 260-296 (353)
285 PLN02929 NADH kinase 30.5 1.2E+02 0.0025 27.3 5.3 34 113-153 63-96 (301)
286 PRK03501 ppnK inorganic polyph 30.4 2.5E+02 0.0054 24.5 7.3 58 18-81 2-71 (264)
287 PLN02586 probable cinnamyl alc 30.3 1.8E+02 0.0039 25.8 6.6 82 51-135 186-268 (360)
288 PLN02591 tryptophan synthase 30.1 2.6E+02 0.0055 24.2 7.3 41 127-171 62-107 (250)
289 PRK11780 isoprenoid biosynthes 30.1 57 0.0012 27.5 3.2 39 18-57 1-40 (217)
290 PRK00625 shikimate kinase; Pro 30.0 2E+02 0.0043 23.2 6.3 77 41-120 65-148 (173)
291 COG1534 Predicted RNA-binding 30.0 1.4E+02 0.003 22.4 4.8 54 143-198 16-70 (97)
292 PRK06801 hypothetical protein; 29.8 3.9E+02 0.0085 23.6 12.0 102 31-142 109-227 (286)
293 PRK13146 hisH imidazole glycer 29.8 1.4E+02 0.003 24.8 5.4 16 65-80 68-83 (209)
294 cd01411 SIR2H SIR2H: Uncharact 29.8 70 0.0015 27.0 3.7 45 105-153 162-206 (225)
295 PRK11199 tyrA bifunctional cho 29.8 89 0.0019 28.5 4.6 41 6-54 86-126 (374)
296 PRK05867 short chain dehydroge 29.7 2.7E+02 0.0058 22.9 7.3 54 19-80 10-63 (253)
297 cd00952 CHBPH_aldolase Trans-o 29.7 2.7E+02 0.0059 24.5 7.6 69 16-85 41-114 (309)
298 PRK13057 putative lipid kinase 29.6 1.1E+02 0.0024 26.4 5.0 32 114-151 50-81 (287)
299 cd02115 AAK Amino Acid Kinases 29.6 3.2E+02 0.007 22.5 11.5 35 24-59 4-40 (248)
300 COG0800 Eda 2-keto-3-deoxy-6-p 29.6 3.6E+02 0.0077 23.0 7.8 117 11-138 6-126 (211)
301 COG1609 PurR Transcriptional r 29.5 4E+02 0.0087 23.6 10.0 46 12-59 52-97 (333)
302 PRK07764 DNA polymerase III su 29.5 4.2E+02 0.009 27.2 9.6 77 126-209 100-179 (824)
303 TIGR01752 flav_long flavodoxin 29.3 1.4E+02 0.003 23.7 5.2 20 63-82 100-119 (167)
304 cd01412 SIRT5_Af1_CobB SIRT5_A 29.2 1.9E+02 0.0042 24.0 6.3 67 106-193 156-223 (224)
305 PRK06924 short chain dehydroge 29.2 93 0.002 25.5 4.3 29 18-54 1-29 (251)
306 TIGR02699 archaeo_AfpA archaeo 29.1 1.6E+02 0.0035 24.1 5.6 37 114-150 78-121 (174)
307 TIGR00065 ftsZ cell division p 29.0 4.4E+02 0.0096 23.9 9.3 54 61-122 118-171 (349)
308 COG0112 GlyA Glycine/serine hy 28.6 68 0.0015 30.0 3.6 41 37-77 291-341 (413)
309 PF04412 DUF521: Protein of un 28.6 4.9E+02 0.011 24.3 14.1 151 16-170 179-348 (400)
310 PRK06756 flavodoxin; Provision 28.5 1.5E+02 0.0032 22.7 5.2 17 63-79 103-119 (148)
311 cd06320 PBP1_allose_binding Pe 28.5 1.2E+02 0.0026 25.1 4.9 34 20-55 1-34 (275)
312 PRK05866 short chain dehydroge 28.4 2.2E+02 0.0047 24.5 6.7 54 19-80 41-94 (293)
313 KOG2683 Sirtuin 4 and related 28.4 93 0.002 27.4 4.2 41 110-153 242-282 (305)
314 TIGR00167 cbbA ketose-bisphosp 28.3 4.2E+02 0.0091 23.4 12.0 36 105-142 195-230 (288)
315 PF05690 ThiG: Thiazole biosyn 28.3 63 0.0014 28.1 3.1 112 18-152 93-205 (247)
316 PRK01911 ppnK inorganic polyph 28.3 2.1E+02 0.0046 25.3 6.6 35 19-56 1-35 (292)
317 PRK13054 lipid kinase; Reviewe 28.2 1.7E+02 0.0036 25.5 5.9 34 115-150 57-90 (300)
318 PRK10494 hypothetical protein; 28.0 1.3E+02 0.0028 26.0 5.1 11 115-125 79-89 (259)
319 TIGR03371 cellulose_yhjQ cellu 28.0 1.3E+02 0.0027 24.9 4.9 34 18-54 1-34 (246)
320 PRK07109 short chain dehydroge 27.9 2.4E+02 0.0053 24.8 7.0 56 18-81 8-63 (334)
321 TIGR03201 dearomat_had 6-hydro 27.8 3.2E+02 0.0069 23.9 7.7 30 50-81 168-197 (349)
322 COG3980 spsG Spore coat polysa 27.8 1.1E+02 0.0023 27.7 4.5 41 19-59 1-41 (318)
323 PRK09250 fructose-bisphosphate 27.5 4.9E+02 0.011 23.9 10.8 114 20-135 164-301 (348)
324 COG4098 comFA Superfamily II D 27.5 2.3E+02 0.005 26.4 6.7 52 33-84 100-154 (441)
325 COG2242 CobL Precorrin-6B meth 27.4 2E+02 0.0044 24.0 5.9 52 115-172 103-154 (187)
326 PF01965 DJ-1_PfpI: DJ-1/PfpI 27.3 47 0.001 25.6 2.0 35 118-152 40-79 (147)
327 cd03817 GT1_UGDG_like This fam 27.3 2.6E+02 0.0057 23.3 6.9 40 106-153 270-311 (374)
328 PRK07890 short chain dehydroge 27.3 2.3E+02 0.0051 23.1 6.5 54 19-80 6-59 (258)
329 cd00432 Ribosomal_L18_L5e Ribo 27.3 1.3E+02 0.0029 22.0 4.4 38 37-74 57-102 (103)
330 PRK07677 short chain dehydroge 27.0 98 0.0021 25.5 4.1 31 19-57 2-32 (252)
331 PRK00071 nadD nicotinic acid m 26.8 1E+02 0.0022 25.3 4.1 27 18-44 3-29 (203)
332 KOG1014 17 beta-hydroxysteroid 26.8 94 0.002 28.1 4.1 51 15-72 45-95 (312)
333 PLN02945 nicotinamide-nucleoti 26.8 1.6E+02 0.0035 25.0 5.4 40 15-54 18-57 (236)
334 PLN02271 serine hydroxymethylt 26.7 66 0.0014 31.5 3.3 38 38-75 443-490 (586)
335 PLN02565 cysteine synthase 26.7 4.5E+02 0.0099 23.3 11.6 32 52-83 175-208 (322)
336 PHA01630 putative group 1 glyc 26.6 1.7E+02 0.0036 26.1 5.7 42 106-155 201-244 (331)
337 PRK03372 ppnK inorganic polyph 26.6 2E+02 0.0043 25.7 6.2 53 113-171 71-130 (306)
338 PRK04155 chaperone protein Hch 26.6 62 0.0013 28.6 2.9 34 117-150 149-186 (287)
339 cd02040 NifH NifH gene encodes 26.6 1.3E+02 0.0029 25.1 4.9 33 18-54 1-33 (270)
340 PF00290 Trp_syntA: Tryptophan 26.6 1.2E+02 0.0025 26.6 4.6 40 127-169 70-110 (259)
341 cd03794 GT1_wbuB_like This fam 26.6 3.8E+02 0.0082 22.3 14.6 73 106-197 286-363 (394)
342 PRK00208 thiG thiazole synthas 26.4 4.4E+02 0.0096 23.0 12.9 104 16-136 91-195 (250)
343 PRK05854 short chain dehydroge 26.3 95 0.0021 27.0 4.0 19 39-57 27-45 (313)
344 cd07034 TPP_PYR_PFOR_IOR-alpha 26.2 3E+02 0.0065 21.2 6.6 19 39-57 2-20 (160)
345 PF03033 Glyco_transf_28: Glyc 26.1 1.1E+02 0.0024 22.7 3.9 39 37-80 13-51 (139)
346 cd04261 AAK_AKii-LysC-BS AAK_A 26.0 1.7E+02 0.0038 24.5 5.5 35 24-59 6-42 (239)
347 PRK13337 putative lipid kinase 26.0 4.4E+02 0.0095 22.9 8.3 32 115-150 58-89 (304)
348 PF14953 DUF4504: Domain of un 26.0 2.8E+02 0.006 24.3 6.8 58 143-200 31-98 (270)
349 TIGR01319 glmL_fam conserved h 25.9 5.5E+02 0.012 24.6 9.1 20 64-83 87-106 (463)
350 PRK12422 chromosomal replicati 25.8 3.2E+02 0.0069 25.6 7.7 105 37-150 120-241 (445)
351 KOG1718 Dual specificity phosp 25.8 62 0.0014 27.0 2.5 25 143-168 133-157 (198)
352 PRK01911 ppnK inorganic polyph 25.8 3.2E+02 0.007 24.1 7.3 30 49-80 65-94 (292)
353 cd06300 PBP1_ABC_sugar_binding 25.5 1.5E+02 0.0033 24.3 5.0 28 20-49 1-28 (272)
354 PRK08264 short chain dehydroge 25.5 3.6E+02 0.0078 21.7 9.2 10 115-124 74-83 (238)
355 PRK07102 short chain dehydroge 25.5 97 0.0021 25.3 3.8 32 18-57 1-32 (243)
356 PRK10834 vancomycin high tempe 25.4 2.6E+02 0.0057 24.2 6.5 10 115-124 45-54 (239)
357 PRK05920 aromatic acid decarbo 25.4 3.5E+02 0.0076 22.7 7.1 79 114-194 93-182 (204)
358 PRK06552 keto-hydroxyglutarate 25.4 3.9E+02 0.0084 22.4 7.4 56 17-80 12-72 (213)
359 TIGR01832 kduD 2-deoxy-D-gluco 25.4 1.1E+02 0.0023 25.1 4.0 32 18-57 5-36 (248)
360 PRK06180 short chain dehydroge 25.2 1E+02 0.0022 26.0 3.9 32 18-57 4-35 (277)
361 KOG0331 ATP-dependent RNA heli 25.2 1.9E+02 0.0041 28.0 6.0 65 4-80 180-244 (519)
362 PRK06182 short chain dehydroge 25.2 3.4E+02 0.0074 22.5 7.2 11 114-124 74-84 (273)
363 PTZ00075 Adenosylhomocysteinas 25.2 3.1E+02 0.0068 26.2 7.4 86 53-156 258-344 (476)
364 KOG0503 Asparaginase [Amino ac 25.2 1.1E+02 0.0024 28.1 4.3 37 113-152 120-156 (368)
365 PRK08979 acetolactate synthase 25.2 3.6E+02 0.0078 25.8 8.1 81 39-127 196-285 (572)
366 PRK05476 S-adenosyl-L-homocyst 25.2 1.7E+02 0.0037 27.5 5.6 86 52-155 215-301 (425)
367 TIGR03087 stp1 sugar transfera 25.2 2.2E+02 0.0048 25.3 6.3 65 110-197 293-360 (397)
368 TIGR00936 ahcY adenosylhomocys 25.1 2.1E+02 0.0046 26.6 6.2 88 50-155 195-284 (406)
369 PLN02695 GDP-D-mannose-3',5'-e 25.1 81 0.0018 28.3 3.5 42 5-54 8-49 (370)
370 TIGR02822 adh_fam_2 zinc-bindi 25.0 83 0.0018 27.6 3.4 31 50-82 167-197 (329)
371 PRK06194 hypothetical protein; 24.9 3.8E+02 0.0081 22.4 7.4 31 19-57 7-37 (287)
372 PRK15454 ethanol dehydrogenase 24.6 2.2E+02 0.0047 26.2 6.2 13 113-125 105-117 (395)
373 TIGR02149 glgA_Coryne glycogen 24.6 1.9E+02 0.0041 25.2 5.7 39 108-154 274-314 (388)
374 PRK08177 short chain dehydroge 24.5 1.3E+02 0.0028 24.4 4.3 32 18-57 1-32 (225)
375 PRK14046 malate--CoA ligase su 24.4 5.6E+02 0.012 23.6 14.2 116 54-196 261-384 (392)
376 PLN02740 Alcohol dehydrogenase 24.3 1.4E+02 0.0031 26.6 4.9 83 50-135 200-289 (381)
377 PRK08105 flavodoxin; Provision 24.3 1.7E+02 0.0037 22.9 4.8 41 39-79 68-120 (149)
378 PRK00170 azoreductase; Reviewe 24.2 2E+02 0.0044 23.0 5.4 36 18-53 1-38 (201)
379 TIGR02482 PFKA_ATP 6-phosphofr 24.1 1.9E+02 0.0042 25.7 5.6 55 22-80 64-121 (301)
380 COG1209 RfbA dTDP-glucose pyro 24.1 25 0.00054 31.3 -0.1 10 119-128 4-13 (286)
381 PRK13111 trpA tryptophan synth 24.1 2.1E+02 0.0045 24.9 5.7 42 127-171 72-118 (258)
382 cd04260 AAK_AKi-DapG-BS AAK_AK 24.0 96 0.0021 26.3 3.5 28 23-51 5-32 (244)
383 cd05212 NAD_bind_m-THF_DH_Cycl 24.0 3.5E+02 0.0077 21.1 9.7 106 15-132 25-130 (140)
384 PF07442 Ponericin: Ponericin; 24.0 50 0.0011 19.0 1.2 23 39-70 6-28 (29)
385 cd06313 PBP1_ABC_sugar_binding 23.9 1.6E+02 0.0034 24.6 4.8 38 110-152 51-88 (272)
386 TIGR02919 accessory Sec system 23.8 3.5E+02 0.0075 25.4 7.5 79 98-197 330-409 (438)
387 PRK02155 ppnK NAD(+)/NADH kina 23.8 2.3E+02 0.0051 24.9 6.0 52 114-171 63-121 (291)
388 PRK09426 methylmalonyl-CoA mut 23.5 4E+02 0.0086 26.8 8.1 46 34-80 594-639 (714)
389 PRK03767 NAD(P)H:quinone oxido 23.5 1.2E+02 0.0025 24.9 3.8 32 19-53 2-34 (200)
390 KOG1207 Diacetyl reductase/L-x 23.4 1.1E+02 0.0024 25.9 3.6 29 51-80 9-37 (245)
391 PLN02949 transferase, transfer 23.4 2.7E+02 0.0058 26.2 6.7 70 109-197 349-420 (463)
392 cd00408 DHDPS-like Dihydrodipi 23.4 4.7E+02 0.01 22.3 8.1 69 17-86 31-104 (281)
393 TIGR00147 lipid kinase, YegS/R 23.4 2.3E+02 0.0049 24.3 5.9 34 114-152 57-91 (293)
394 PRK07035 short chain dehydroge 23.4 1.2E+02 0.0025 25.0 3.9 31 19-57 9-39 (252)
395 COG0502 BioB Biotin synthase a 23.3 3.4E+02 0.0075 24.7 7.0 62 91-152 165-233 (335)
396 PF03129 HGTP_anticodon: Antic 23.3 2.6E+02 0.0057 19.3 7.6 58 21-81 2-59 (94)
397 cd01523 RHOD_Lact_B Member of 23.2 2.5E+02 0.0055 19.6 5.2 30 16-53 59-88 (100)
398 PRK08339 short chain dehydroge 23.2 1.3E+02 0.0027 25.3 4.1 19 39-57 21-39 (263)
399 PF01081 Aldolase: KDPG and KH 23.1 2.5E+02 0.0054 23.4 5.8 107 18-136 8-119 (196)
400 PRK00481 NAD-dependent deacety 23.0 2.2E+02 0.0047 24.2 5.5 69 106-195 169-238 (242)
401 PLN02891 IMP cyclohydrolase 23.0 1.2E+02 0.0025 29.6 4.1 34 40-80 36-69 (547)
402 cd03147 GATase1_Ydr533c_like T 22.9 57 0.0012 27.8 1.9 34 118-151 97-134 (231)
403 PRK12367 short chain dehydroge 22.9 1.2E+02 0.0026 25.5 3.9 12 184-195 196-207 (245)
404 PRK07023 short chain dehydroge 22.9 1.4E+02 0.003 24.4 4.2 30 18-55 1-30 (243)
405 PRK07775 short chain dehydroge 22.7 4.2E+02 0.009 22.2 7.3 32 18-57 10-41 (274)
406 PF00258 Flavodoxin_1: Flavodo 22.7 84 0.0018 23.7 2.7 38 17-55 86-123 (143)
407 COG0148 Eno Enolase [Carbohydr 22.7 3.3E+02 0.0072 25.6 6.9 75 99-174 306-386 (423)
408 PRK08277 D-mannonate oxidoredu 22.7 4.2E+02 0.0092 22.0 7.3 56 17-80 9-64 (278)
409 cd08184 Fe-ADH3 Iron-containin 22.7 4.8E+02 0.01 23.5 8.0 12 114-125 81-92 (347)
410 cd03796 GT1_PIG-A_like This fa 22.7 3.1E+02 0.0067 24.4 6.8 68 107-197 262-331 (398)
411 TIGR03575 selen_PSTK_euk L-ser 22.6 2.2E+02 0.0047 25.9 5.7 49 144-195 125-174 (340)
412 KOG1209 1-Acyl dihydroxyaceton 22.6 2.1E+02 0.0045 25.1 5.2 47 14-67 3-49 (289)
413 PRK06300 enoyl-(acyl carrier p 22.6 1.1E+02 0.0024 26.9 3.8 18 39-56 23-40 (299)
414 TIGR03628 arch_S11P archaeal r 22.6 3.6E+02 0.0078 20.6 8.1 60 21-81 34-103 (114)
415 PTZ00286 6-phospho-1-fructokin 22.5 6.2E+02 0.014 24.0 8.9 33 49-81 88-126 (459)
416 cd03133 GATase1_ES1 Type 1 glu 22.4 1E+02 0.0022 26.0 3.4 12 118-129 85-96 (213)
417 PRK05565 fabG 3-ketoacyl-(acyl 22.4 4.1E+02 0.0089 21.3 8.3 31 18-56 5-35 (247)
418 PF09345 DUF1987: Domain of un 22.4 1.4E+02 0.003 22.2 3.7 16 154-169 25-40 (99)
419 PRK10537 voltage-gated potassi 22.4 6.2E+02 0.013 23.3 10.2 94 49-150 240-335 (393)
420 PRK11096 ansB L-asparaginase I 22.3 1.2E+02 0.0027 27.5 4.1 49 113-164 99-152 (347)
421 TIGR02095 glgA glycogen/starch 22.3 6.1E+02 0.013 23.2 14.4 71 109-195 360-433 (473)
422 KOG4716 Thioredoxin reductase 22.2 1.4E+02 0.003 27.9 4.3 49 42-94 11-60 (503)
423 CHL00188 hisH imidazole glycer 22.2 1.3E+02 0.0029 25.1 4.0 10 113-123 38-47 (210)
424 PRK09860 putative alcohol dehy 22.2 3.4E+02 0.0073 24.7 7.0 13 113-125 87-99 (383)
425 COG2515 Acd 1-aminocyclopropan 22.2 2.6E+02 0.0055 25.4 5.9 39 113-154 179-217 (323)
426 PRK14573 bifunctional D-alanyl 22.2 1.5E+02 0.0031 29.9 4.9 37 18-54 451-487 (809)
427 PRK03378 ppnK inorganic polyph 22.0 3.5E+02 0.0075 23.9 6.8 53 113-171 62-121 (292)
428 PF03721 UDPG_MGDP_dh_N: UDP-g 22.0 1.1E+02 0.0024 25.0 3.4 11 112-122 74-84 (185)
429 TIGR00520 asnASE_II L-asparagi 22.0 1.2E+02 0.0027 27.6 4.0 35 115-152 106-140 (349)
430 cd00951 KDGDH 5-dehydro-4-deox 22.0 5.3E+02 0.011 22.4 8.0 69 16-86 33-106 (289)
431 cd06424 UGGPase UGGPase cataly 22.0 1.9E+02 0.0042 26.0 5.1 66 117-196 2-77 (315)
432 PRK12481 2-deoxy-D-gluconate 3 22.0 1.3E+02 0.0028 25.0 3.9 52 19-80 9-60 (251)
433 PLN00141 Tic62-NAD(P)-related 21.9 1.6E+02 0.0035 24.4 4.5 30 18-55 17-46 (251)
434 PRK06696 uridine kinase; Valid 21.9 2.2E+02 0.0048 23.5 5.3 37 15-55 19-55 (223)
435 PRK12743 oxidoreductase; Provi 21.9 4.5E+02 0.0098 21.6 9.9 106 17-141 1-114 (256)
436 PRK10037 cell division protein 21.8 1.9E+02 0.0042 24.2 5.0 33 18-53 1-33 (250)
437 cd01170 THZ_kinase 4-methyl-5- 21.8 4.2E+02 0.009 22.4 7.1 67 61-153 18-87 (242)
438 cd03148 GATase1_EcHsp31_like T 21.8 67 0.0015 27.4 2.1 34 118-151 99-136 (232)
439 cd08185 Fe-ADH1 Iron-containin 21.7 2.8E+02 0.0061 25.1 6.3 13 113-125 82-94 (380)
440 cd06318 PBP1_ABC_sugar_binding 21.7 2E+02 0.0044 23.7 5.1 38 110-152 51-88 (282)
441 PF01202 SKI: Shikimate kinase 21.7 1.8E+02 0.0038 22.7 4.4 37 42-80 55-91 (158)
442 PRK05782 bifunctional sirohydr 21.6 5.7E+02 0.012 23.2 8.2 53 32-86 18-75 (335)
443 COG1597 LCB5 Sphingosine kinas 21.6 2.3E+02 0.0049 25.0 5.5 31 115-150 58-89 (301)
444 CHL00200 trpA tryptophan synth 21.6 5.4E+02 0.012 22.3 8.0 49 100-149 152-207 (263)
445 PRK08085 gluconate 5-dehydroge 21.6 4.5E+02 0.0098 21.4 7.5 56 17-80 8-63 (254)
446 cd03806 GT1_ALG11_like This fa 21.5 3.6E+02 0.0078 24.6 7.0 74 106-198 316-391 (419)
447 cd06309 PBP1_YtfQ_like Peripla 21.5 2.1E+02 0.0046 23.5 5.2 27 31-57 10-36 (273)
448 PRK14557 pyrH uridylate kinase 21.5 1.4E+02 0.003 25.7 4.0 41 18-58 4-53 (247)
449 cd03809 GT1_mtfB_like This fam 21.5 4.8E+02 0.01 21.7 11.8 67 108-197 266-334 (365)
450 PRK09134 short chain dehydroge 21.5 4.3E+02 0.0094 21.6 7.1 33 17-57 8-40 (258)
451 PRK00726 murG undecaprenyldiph 21.4 1.6E+02 0.0035 25.7 4.6 38 18-59 1-38 (357)
452 PF03853 YjeF_N: YjeF-related 21.4 74 0.0016 25.5 2.2 60 15-79 22-86 (169)
453 TIGR03088 stp2 sugar transfera 21.4 5.4E+02 0.012 22.3 15.4 67 110-197 268-336 (374)
454 TIGR03127 RuMP_HxlB 6-phospho 21.4 4.1E+02 0.0089 20.9 11.1 69 7-81 19-106 (179)
455 cd03792 GT1_Trehalose_phosphor 21.4 3.8E+02 0.0082 23.4 7.0 42 108-157 267-310 (372)
456 PRK00207 sulfur transfer compl 21.3 2.4E+02 0.0053 21.6 5.0 33 20-53 2-34 (128)
457 PRK15424 propionate catabolism 21.3 7.6E+02 0.016 23.9 11.0 137 18-161 107-295 (538)
458 PRK09291 short chain dehydroge 21.2 1.4E+02 0.003 24.4 3.9 31 19-57 3-33 (257)
459 PRK07478 short chain dehydroge 21.1 4.6E+02 0.01 21.4 7.4 59 17-83 5-63 (254)
460 PRK07523 gluconate 5-dehydroge 21.1 4.6E+02 0.01 21.4 7.3 57 19-83 11-67 (255)
461 KOG4321 Predicted phosphate ac 21.1 1.1E+02 0.0025 25.5 3.2 30 105-134 68-97 (279)
462 PRK08267 short chain dehydroge 21.1 1.7E+02 0.0036 24.2 4.4 29 18-54 1-29 (260)
463 TIGR00715 precor6x_red precorr 21.0 3.9E+02 0.0085 23.1 6.8 17 181-197 239-255 (256)
464 PF13580 SIS_2: SIS domain; PD 21.0 2.3E+02 0.005 21.7 4.9 42 33-76 19-60 (138)
465 PRK08217 fabG 3-ketoacyl-(acyl 20.9 1.4E+02 0.0031 24.2 3.9 31 19-57 6-36 (253)
466 PF10727 Rossmann-like: Rossma 20.9 1.4E+02 0.003 23.1 3.5 28 18-54 10-37 (127)
467 PRK10953 cysJ sulfite reductas 20.9 95 0.0021 30.4 3.2 36 16-54 59-94 (600)
468 cd06306 PBP1_TorT-like TorT-li 20.8 1.9E+02 0.0041 24.0 4.7 36 110-151 53-88 (268)
469 PLN03050 pyridoxine (pyridoxam 20.8 1.7E+02 0.0038 25.1 4.5 30 19-53 61-90 (246)
470 PF07287 DUF1446: Protein of u 20.7 2.4E+02 0.0052 25.9 5.6 52 30-81 51-106 (362)
471 PRK09072 short chain dehydroge 20.7 1.4E+02 0.0031 24.7 4.0 31 18-56 5-35 (263)
472 PF01695 IstB_IS21: IstB-like 20.7 3.7E+02 0.008 21.6 6.2 18 63-80 64-81 (178)
473 PRK05723 flavodoxin; Provision 20.7 2.6E+02 0.0057 22.0 5.3 21 33-53 99-119 (151)
474 PRK08589 short chain dehydroge 20.6 1.4E+02 0.0031 25.1 3.9 53 19-80 7-59 (272)
475 PRK07062 short chain dehydroge 20.6 1.4E+02 0.0031 24.7 3.9 31 19-57 9-39 (265)
476 PRK00561 ppnK inorganic polyph 20.5 5.3E+02 0.011 22.5 7.5 55 20-80 2-63 (259)
477 TIGR03366 HpnZ_proposed putati 20.5 2E+02 0.0043 24.4 4.8 83 50-135 122-208 (280)
478 PRK07152 nadD putative nicotin 20.5 1.3E+02 0.0027 27.0 3.7 30 19-48 1-30 (342)
479 PF03486 HI0933_like: HI0933-l 20.5 59 0.0013 30.2 1.6 26 52-79 3-28 (409)
480 PRK14570 D-alanyl-alanine synt 20.5 1.7E+02 0.0036 26.6 4.5 37 19-55 3-40 (364)
481 cd04246 AAK_AK-DapG-like AAK_A 20.4 2.4E+02 0.0052 23.6 5.3 34 24-58 6-41 (239)
482 PRK06849 hypothetical protein; 20.4 1.5E+02 0.0033 26.7 4.3 35 16-58 2-36 (389)
483 COG0329 DapA Dihydrodipicolina 20.4 6E+02 0.013 22.4 8.1 68 18-85 39-110 (299)
484 PRK13234 nifH nitrogenase redu 20.4 2.1E+02 0.0046 24.9 5.1 34 16-53 2-35 (295)
485 PRK08303 short chain dehydroge 20.3 1.4E+02 0.003 26.1 3.8 31 19-57 9-39 (305)
486 COG4221 Short-chain alcohol de 20.3 4.6E+02 0.01 22.8 7.0 57 14-80 1-58 (246)
487 TIGR02418 acolac_catab acetola 20.3 7.4E+02 0.016 23.4 10.0 19 39-57 2-20 (539)
488 cd01635 Glycosyltransferase_GT 20.2 2.4E+02 0.0053 21.6 5.0 44 105-154 172-215 (229)
489 PF00464 SHMT: Serine hydroxym 20.2 71 0.0015 29.7 2.1 43 37-79 307-359 (399)
490 PRK08589 short chain dehydroge 20.2 5.2E+02 0.011 21.6 7.5 29 51-80 8-36 (272)
491 PRK03170 dihydrodipicolinate s 20.2 5.7E+02 0.012 22.0 10.1 69 16-85 34-107 (292)
492 smart00516 SEC14 Domain in hom 20.2 3.4E+02 0.0074 20.3 5.7 63 127-194 79-145 (158)
493 PF13524 Glyco_trans_1_2: Glyc 20.1 1.2E+02 0.0026 20.9 2.9 20 179-198 42-61 (92)
494 TIGR02076 pyrH_arch uridylate 20.1 1.3E+02 0.0028 25.0 3.5 43 111-157 99-144 (221)
495 PF08351 DUF1726: Domain of un 20.1 62 0.0013 23.6 1.4 52 67-120 31-90 (92)
496 PRK07308 flavodoxin; Validated 20.0 2.1E+02 0.0045 21.9 4.5 58 21-79 51-118 (146)
497 TIGR03249 KdgD 5-dehydro-4-deo 20.0 5.8E+02 0.013 22.1 7.8 69 16-86 38-111 (296)
498 COG0205 PfkA 6-phosphofructoki 20.0 2.8E+02 0.006 25.4 5.8 55 22-80 67-124 (347)
No 1
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=100.00 E-value=2.7e-55 Score=361.31 Aligned_cols=178 Identities=46% Similarity=0.842 Sum_probs=171.1
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEecCCCCChhHHHHHHHHhcCCeEEEEecCcCCCCCCCCCCCcee
Q 028256 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEV 98 (211)
Q Consensus 19 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~a~gA~~~gG~viGv~P~~~~~~e~~~~~~~~~ 98 (211)
++|||||||+.+++++|++.|++||++||++|++||||||..|+|+|+++||+++||.|+||+|..+...+.+++.++++
T Consensus 1 ~~i~V~~~s~~~~~~~~~~~A~~lG~~la~~g~~lV~GGg~~GlM~a~a~ga~~~gG~viGi~p~~l~~~~~~~~~~~~~ 80 (178)
T TIGR00730 1 KTVCVYCGSSPGGNAAYKELAAELGAYLAGQGWGLVYGGGRVGLMGAIADAAMENGGTAVGVNPSGLFSGEVVHQNLTEL 80 (178)
T ss_pred CEEEEECcCCCCCCcHHHHHHHHHHHHHHHCCCEEEECCChHhHHHHHHHHHHhcCCeEEEecchhhhhhhccCCCCCce
Confidence 48999999999999999999999999999999999999996699999999999999999999999887777778888899
Q ss_pred eecCCHHHHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCCCccccc
Q 028256 99 KAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARY 178 (211)
Q Consensus 99 ~~~~~~~~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~ 178 (211)
+++++|++||.+|++.||+||++|||+|||+|++++|+|.|+|.++||++++|.+|||+++++|+++++++||++++..+
T Consensus 81 i~~~~~~~Rk~~m~~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n~~g~~~~l~~~l~~~~~~gfi~~~~~~ 160 (178)
T TIGR00730 81 IEVNGMHERKAMMAELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFNVNGHFDGLVEWLKYSIQEGFISESHLK 160 (178)
T ss_pred EEECCHHHHHHHHHHhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEECCcchHHHHHHHHHHHHHCCCCCHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEcCCHHHHHHHhhhh
Q 028256 179 IIVSAQTAHELICKLEVF 196 (211)
Q Consensus 179 ~i~~~~d~ee~~~~l~~~ 196 (211)
.+.+++|++|++++|++|
T Consensus 161 ~~~~~d~~~e~~~~i~~~ 178 (178)
T TIGR00730 161 LIHVVSRPDELIEQVQNY 178 (178)
T ss_pred cEEEcCCHHHHHHHHHhC
Confidence 999999999999999764
No 2
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=100.00 E-value=4.6e-45 Score=306.44 Aligned_cols=185 Identities=36% Similarity=0.625 Sum_probs=169.7
Q ss_pred hhcCcceEEEEeCCCCCCCHH-HHHHHHHHHHHHHHcCCeEEecCCCCChhHHHHHHHHhcCCeEEEEecCcCCCCCCCC
Q 028256 14 LKSRFKRVCVFCGSSPGKSPS-YQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITG 92 (211)
Q Consensus 14 ~~~~~~~I~Vfggs~~~~~~~-~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~a~gA~~~gG~viGv~P~~~~~~e~~~ 92 (211)
....+++|||||||+.+.++. |++.|++||++||++|+.|++|||+ |+|||+++||.++||.||||+|......+..+
T Consensus 10 ~~~~~~~i~V~~gs~~~~~~~~~~~~a~~lg~~la~~g~~V~tGG~~-GiMea~~~gA~~~gg~~vGi~p~~~~~~e~~~ 88 (205)
T COG1611 10 LFIGIRQIVVICGSARGIEPEEYYELARELGRELAKRGLLVITGGGP-GVMEAVARGALEAGGLVVGILPGLLHEQEPPN 88 (205)
T ss_pred cccCcceEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEeCCch-hhhhHHHHHHHHcCCeEEEecCCCchhhccCc
Confidence 345688999999999877666 9999999999999999888888876 99999999999999999999998876655445
Q ss_pred CCCceeeecCCHHHHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHhCCC--CCcEEEEeCCccchhHHHHHH-HHHHc
Q 028256 93 DTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIH--DKPVGLLNVDGYYNSLLSFID-KAVDE 169 (211)
Q Consensus 93 ~~~~~~~~~~~~~~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~--~kPiill~~~g~~~~l~~~l~-~~~~~ 169 (211)
...++++++.+|++||..|+++|||||++|||+||++|++++|+|.|++.+ .+|+++++.++||+++.+|++ +++.+
T Consensus 89 ~~~~~l~~~~~~~~Rk~~~~~~ada~V~~pGG~GTleEl~e~lt~~q~g~~~l~~~~~i~~~~~~~~~~~~~~d~~~i~~ 168 (205)
T COG1611 89 YEVIELITGMDFAERKRAMVRSADAFIVLPGGFGTLEELFEALTLGQTGVHALTPPPLILNGNGFWEPLLEFLDPHLIVE 168 (205)
T ss_pred cccceeeecCCHHHHHHHHHHhCCEEEEeCCCcchHHHHHHHHHHhhCCcccCCCCcEEecchHHHHHHHHHhCHHHHHh
Confidence 556788999999999999999999999999999999999999999999988 888889999999999999998 99999
Q ss_pred CCCCcccccceEEcCCHHHHHHHhhhhccC
Q 028256 170 GFIAPAARYIIVSAQTAHELICKLEVFFFF 199 (211)
Q Consensus 170 g~i~~~~~~~i~~~~d~ee~~~~l~~~~~~ 199 (211)
+++++...+.+.+++|++++++.+.++.++
T Consensus 169 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (205)
T COG1611 169 GLISEADRELLIVVDDAEEAIDAILKYLPP 198 (205)
T ss_pred hcCChhhhhheeeecCHHHHHHHHHHhccc
Confidence 999999999999999999999999998865
No 3
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=100.00 E-value=3.1e-42 Score=279.13 Aligned_cols=157 Identities=26% Similarity=0.396 Sum_probs=134.4
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEecCCCCChhHHHHHHHHhcCCeEEEEecCcCCCCCCCCCCCce
Q 028256 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGE 97 (211)
Q Consensus 18 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~a~gA~~~gG~viGv~P~~~~~~e~~~~~~~~ 97 (211)
|++|||||||+ .++.|++.|++||++||++|+.|||||+. |+|++++++|+++||+||||+|..+. ..+++.+
T Consensus 1 ~~~I~V~gss~--~~~~~~~~A~~lg~~La~~g~~lv~Gg~~-GlM~a~a~ga~~~gg~viGVlp~~l~----~~~~~~~ 73 (159)
T TIGR00725 1 MVQIGVIGSSN--KSEELYEIAYRLGKELAKKGHILINGGRT-GVMEAVSKGAREAGGLVVGILPDEDF----AGNPYLT 73 (159)
T ss_pred CeEEEEEeCCC--CChHHHHHHHHHHHHHHHCCCEEEcCCch-hHHHHHHHHHHHCCCeEEEECChhhc----cCCCCce
Confidence 57899999887 47899999999999999999999998876 99999999999999999999998763 1233334
Q ss_pred ee-ecCCHHHHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCCCccc
Q 028256 98 VK-AVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAA 176 (211)
Q Consensus 98 ~~-~~~~~~~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~ 176 (211)
.+ ....+++||++|++.|||||++|||+|||+|++++|+ ++|||+++|.+|||+++++++ +.+.+|++ +
T Consensus 74 ~~i~~~~~~~Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~------~~kpv~~l~~~g~~~~~l~~~--~~~~~~~~-~- 143 (159)
T TIGR00725 74 IKVKTGMNFARNFILVRSADVVVSVGGGYGTAIEILGAYA------LGGPVVVLRGTGGWTDRLSQV--LIEGVYLD-E- 143 (159)
T ss_pred EEEECCCcchHHHHHHHHCCEEEEcCCchhHHHHHHHHHH------cCCCEEEEECCCcchHHHHHH--Hhcccccc-c-
Confidence 44 4444488999999999999999999999999999999 799999999999999998865 44444444 2
Q ss_pred ccceEEcCCHHHHHHHh
Q 028256 177 RYIIVSAQTAHELICKL 193 (211)
Q Consensus 177 ~~~i~~~~d~ee~~~~l 193 (211)
.+.+++|++|+++.+
T Consensus 144 --~~~~~~~~~e~~~~~ 158 (159)
T TIGR00725 144 --RVIVEITPAEAVKLA 158 (159)
T ss_pred --eeEecCCHHHHHHhh
Confidence 599999999999875
No 4
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=100.00 E-value=3.6e-39 Score=253.91 Aligned_cols=131 Identities=42% Similarity=0.743 Sum_probs=124.9
Q ss_pred hHHHHHHHHhcCCeEEEEecCcCCC-CCCCCCCCceeeecCCHHHHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHhC
Q 028256 63 MGLVSQAVYDGGRHVLGVIPKTLMP-REITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLG 141 (211)
Q Consensus 63 M~a~a~gA~~~gG~viGv~P~~~~~-~e~~~~~~~~~~~~~~~~~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg 141 (211)
|+|+++||+++||.|+||+|+.+.+ ++.+++.+++++.+++|++||..|+++||+||++|||+|||+|++++|+|.|++
T Consensus 1 M~a~~~ga~~~gG~viGi~p~~~~~~~~~~~~~~~~~~~~~~~~~Rk~~m~~~sda~I~lPGG~GTl~El~~~~~~~~l~ 80 (133)
T PF03641_consen 1 MGAVAKGAKEAGGRVIGIIPEFLFPFEEPPNPYVTELIIVDDMFERKEIMIESSDAFIALPGGIGTLDELFEALTLMQLG 80 (133)
T ss_dssp HHHHHHHHHHTTTTEEEEEETTGTTTTTTCCTTSSEEEEESSHHHHHHHHHHHESEEEEES-SHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHcCCeEEEEecCccccccccCCcccCceeEeCChHHHHHHHHHhCCEEEEEecCCchHHHHHHHHHHHhhc
Confidence 9999999999999999999999888 667777888999999999999999999999999999999999999999999999
Q ss_pred CCCC-cEEEEeCCccchhHHHHHHHHHHcCCCCcccccceEEcCCHHHHHHHh
Q 028256 142 IHDK-PVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKL 193 (211)
Q Consensus 142 ~~~k-Piill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee~~~~l 193 (211)
.++| ||+|+|.+|||+++++|+++++++||++++..+.+.+++|++|+++.|
T Consensus 81 ~~~~~Piil~~~~g~w~~l~~~l~~~~~~g~i~~~~~~~~~~~d~~~e~~~~i 133 (133)
T PF03641_consen 81 RHNKVPIILLNIDGFWDPLLEFLDRMIEEGFISPDDLDLLHFVDDPEEALEYI 133 (133)
T ss_dssp SSTS-EEEEEECGGCCHHHHHHHHHHHHTTSSSHHHHCCEEEESSHHHHHHHH
T ss_pred cccCCCEEEeCCcchHHHHHHHHHHHHHCCCCCHHHCCeEEEeCCHHHHHhhC
Confidence 9877 999999999999999999999999999999999999999999999876
No 5
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=99.68 E-value=2.1e-15 Score=128.13 Aligned_cols=155 Identities=14% Similarity=0.192 Sum_probs=117.6
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEecCCCCChhHHHHHHHHhcCCeEEEEecCcCC---CCCC-----
Q 028256 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLM---PREI----- 90 (211)
Q Consensus 19 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~a~gA~~~gG~viGv~P~~~~---~~e~----- 90 (211)
+.|+|. |||.. ++...+.|+++++.|+++|+.||+|++. |+|.+++++|+++||.+|+|+|..+. |.+.
T Consensus 45 ~~iaIv-GsR~~-s~~~~~~a~~l~~~l~~~g~~IVSG~A~-GiD~~ah~~al~~~g~tIaVl~~gld~~yp~~n~~l~~ 121 (220)
T TIGR00732 45 RKVAIV-GTRRP-TKYGERWTRKLAEELAKNGVTIVSGLAL-GIDGIAHKAALKVNGRTIAVLGTGLDQIYPRQNSKLAA 121 (220)
T ss_pred CeEEEE-cCCCC-CHHHHHHHHHHHHHHHhCCCEEEcCchh-hHHHHHHHHHHHcCCCEEEEECCCCccCCchhhHHHHH
Confidence 689999 56654 5666788999999999999999999987 99999999999999999999997652 2210
Q ss_pred --CCCC---Ccee-----eecCCHHHHHHHHHHhcCEEEEecCC--cCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchh
Q 028256 91 --TGDT---VGEV-----KAVSGMHQRKAEMARQADAFIALPGG--YGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNS 158 (211)
Q Consensus 91 --~~~~---~~~~-----~~~~~~~~Rk~~m~~~sDa~IvlpGG--~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~ 158 (211)
..+. +++. .....|..|++++...||++||+..+ .||+.++-.++. .+|||+.+-. ..+++
T Consensus 122 ~i~~~gglliSe~p~~~~~~~~~f~~RNriia~ls~~vivve~~~~sGtl~ta~~A~~------~gr~v~~~pg-~~~~~ 194 (220)
T TIGR00732 122 KIAENGGLLLSEYPPDTKPIKYNFPKRNRIISGLSRAVLVVEAPLKSGALITARYALE------QGREVFAYPG-DLNSP 194 (220)
T ss_pred HHHHcCCEEEEecCCCCCCCcccHHHHHHHHHHhcCEEEEEECCCCCchHHHHHHHHH------hCCcEEEEcC-CCCCc
Confidence 0001 1111 12346789999999999999999987 799999998887 6899999844 24555
Q ss_pred HHHHHHHHHHcCCCCcccccceEEcCCHHHHHHH
Q 028256 159 LLSFIDKAVDEGFIAPAARYIIVSAQTAHELICK 192 (211)
Q Consensus 159 l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee~~~~ 192 (211)
..+.-..++.+|- ..+.+++|+++.
T Consensus 195 ~~~G~~~Li~~GA---------~~i~~~~d~~~~ 219 (220)
T TIGR00732 195 ESDGCHKLIEQGA---------ALITSAKDILET 219 (220)
T ss_pred cchHHHHHHHCCC---------EEECCHHHHHHh
Confidence 5455566777663 346778888764
No 6
>PF02481 DNA_processg_A: DNA recombination-mediator protein A; InterPro: IPR003488 The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins. In Helicobacter pylori, dprA is required for natural chromosomal and plasmid transformation []. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyse the homology-dependent formation of joint molecules. While the Escherichia coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation [].; GO: 0009294 DNA mediated transformation; PDB: 3MAJ_A.
Probab=99.40 E-value=6.1e-12 Score=106.37 Aligned_cols=144 Identities=19% Similarity=0.215 Sum_probs=89.1
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEecCCCCChhHHHHHHHHhcCCeEEEEecCcCC---CCCCC--
Q 028256 17 RFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLM---PREIT-- 91 (211)
Q Consensus 17 ~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~a~gA~~~gG~viGv~P~~~~---~~e~~-- 91 (211)
..+.|+|. ||+.. ++...+.|+++++.|+++|+.||+|+.. |+..+++++|+++||++|+|+|..+. |.+..
T Consensus 43 ~~~~iaIv-GsR~~-s~~g~~~a~~l~~~l~~~g~~vvSGlA~-GiD~~ah~~al~~~g~tIaVl~~gl~~~yP~~n~~l 119 (212)
T PF02481_consen 43 KQPSIAIV-GSRNP-SEYGLKFAKKLARELAKAGIVVVSGLAK-GIDAAAHRGALDAGGPTIAVLACGLDNIYPKENREL 119 (212)
T ss_dssp GS-EEEEE---SS---HHHHHHHHHHHHHHHHHT-EEEE---T-THHHHHHHHHTTT---EEEE-SS-TTS-SSGGGHHH
T ss_pred cCceEEEE-cCCCC-CHHHHHHHHHHHHHHhhCCEEEEcCCCC-CHHHHHHHHHHHccCCEEEEECCCcccccchhhHHH
Confidence 35789999 56764 6777899999999999999999999987 99999999999999999999997652 32210
Q ss_pred ------CCCC-------ceeeecCCHHHHHHHHHHhcCEEEEecC--CcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccc
Q 028256 92 ------GDTV-------GEVKAVSGMHQRKAEMARQADAFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYY 156 (211)
Q Consensus 92 ------~~~~-------~~~~~~~~~~~Rk~~m~~~sDa~IvlpG--G~GTL~El~~~~~~~~lg~~~kPiill~~~g~~ 156 (211)
.+.+ ..-.....|..|++++...||++||+.- ..||+.-+-.++. .+|||+.+.. ..+
T Consensus 120 ~~~i~~~~glliSe~~p~~~~~~~~f~~RNRiiaaLs~~~vvvea~~~sGt~~ta~~A~~------~gr~v~~vp~-~~~ 192 (212)
T PF02481_consen 120 AERILDEGGLLISEYPPGTKPSRWRFPERNRIIAALSDAVVVVEAGEKSGTLHTARFALE------QGRPVFAVPG-PID 192 (212)
T ss_dssp HHHHHHTT-EEEE-S-TT----TTHHHHHHHHHHHH-S-EEE----TT-THHHHHHHHHH------HT--EEE-----TT
T ss_pred HHHHHhcCcEEEeCCCCCCCcccccChHHHHHHHHhCCeEEEEecCCCChHHHHHHHHHH------cCCeEEEEeC-CCC
Confidence 1110 1112234578999999999999999964 4799998888887 5899998743 356
Q ss_pred hhHHHHHHHHHHcC
Q 028256 157 NSLLSFIDKAVDEG 170 (211)
Q Consensus 157 ~~l~~~l~~~~~~g 170 (211)
++..+.-..++++|
T Consensus 193 ~~~~~G~~~Li~~G 206 (212)
T PF02481_consen 193 DPNSEGNNELIKEG 206 (212)
T ss_dssp -GGGHHHHHHHHTT
T ss_pred CcccHHHHHHHHcC
Confidence 66666666777776
No 7
>PRK10736 hypothetical protein; Provisional
Probab=99.32 E-value=8.9e-11 Score=106.75 Aligned_cols=157 Identities=15% Similarity=0.186 Sum_probs=117.2
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEecCCCCChhHHHHHHHHhcCCeEEEEecCcC---CCCC------
Q 028256 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTL---MPRE------ 89 (211)
Q Consensus 19 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~a~gA~~~gG~viGv~P~~~---~~~e------ 89 (211)
+.|+|. |||.. ++...+.|+++++.|+++|+.||+|+.. |+..+++++|+++||++|+|++..+ +|.+
T Consensus 108 ~~iaiV-GsR~~-s~yg~~~~~~l~~~la~~g~~IVSGlA~-GiD~~AH~~aL~~~g~TIaVlg~Gld~~YP~~n~~L~~ 184 (374)
T PRK10736 108 PQLAVV-GSRAH-SWYGERWGRLFCEELAKNGLTITSGLAR-GIDGVAHRAALQAGGKTIAVLGNGLENIYPRRHARLAE 184 (374)
T ss_pred CeEEEE-CCCCC-CHHHHHHHHHHHHHHHHCCCEEECcchh-hHHHHHHHHHHHcCCCEEEEECCCCCccCCHhHHHHHH
Confidence 579999 56764 5666788999999999999999999987 9999999999999999999988654 2321
Q ss_pred -C-CCCCC--cee-----eecCCHHHHHHHHHHhcCEEEEecCC--cCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchh
Q 028256 90 -I-TGDTV--GEV-----KAVSGMHQRKAEMARQADAFIALPGG--YGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNS 158 (211)
Q Consensus 90 -~-~~~~~--~~~-----~~~~~~~~Rk~~m~~~sDa~IvlpGG--~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~ 158 (211)
. ..+.+ +|. ....+|..|++++...|+++||+--+ +|||.=.-.++. .+|+|+.+-. ..+++
T Consensus 185 ~I~~~~G~liSEyp~~~~p~~~~Fp~RNRIIagLS~~viVvEA~~kSGsliTA~~Al~------~gR~VfavPG-~i~~~ 257 (374)
T PRK10736 185 SIIEQGGALVSEFPLDTPPLAANFPRRNRIISGLSKGVLVVEAALRSGSLVTARCALE------QGRDVFALPG-PIGNP 257 (374)
T ss_pred HHHhcCCEEEECCCCCCCCChhhhhHhhhHHHHhCCeEEEEEeCCCCchHHHHHHHHH------hCCeEEEEcC-CCCCc
Confidence 0 00100 111 12356889999999999999999654 688887777776 7899998843 24555
Q ss_pred HHHHHHHHHHcCCCCcccccceEEcCCHHHHHHHhh
Q 028256 159 LLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKLE 194 (211)
Q Consensus 159 l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee~~~~l~ 194 (211)
.-.--.+++.+|- ..+.+++|+++.+.
T Consensus 258 ~s~G~n~LI~~GA---------~lv~~~~Di~~~l~ 284 (374)
T PRK10736 258 GSEGPHWLIKQGA---------YLVTSPEDILENLQ 284 (374)
T ss_pred cchhHHHHHHCCC---------EEeCCHHHHHHHhh
Confidence 5455556666663 45778888888874
No 8
>COG0758 Smf Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=99.10 E-value=2.9e-09 Score=96.11 Aligned_cols=125 Identities=19% Similarity=0.225 Sum_probs=97.9
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEecCCCCChhHHHHHHHHhcCCeEEEEecCcC---CCCCC-----
Q 028256 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTL---MPREI----- 90 (211)
Q Consensus 19 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~a~gA~~~gG~viGv~P~~~---~~~e~----- 90 (211)
+.++|. |||.. +..-.+.++++++.|+++|++||+|+.. |+..+++++|+++||.+|+|+...+ +|++.
T Consensus 112 ~~vaIV-GsR~~-S~~g~~~~~~~a~~L~~~g~~IvSGlA~-GID~~AH~aaL~~~G~TiaVl~~Gld~iYP~~n~~l~~ 188 (350)
T COG0758 112 PSVAIV-GSRKP-SKYGLDYTRDLAEYLAQNGITIVSGLAR-GIDTEAHKAALNAGGKTIAVLATGLDKIYPRENIKLAE 188 (350)
T ss_pred CceEEE-eCCCC-CHhHHHHHHHHHHHHHhCCeEEEecCcc-eecHHHHHHHHHcCCcEEEEEcCCCCccCChhhHHHHH
Confidence 689999 56765 5666789999999999999999999987 9999999999999999999987654 23211
Q ss_pred --CCCC-------CceeeecCCHHHHHHHHHHhcCEEEEecCC--cCcHHHHHHHHHHHHhCCCCCcEEEEeC
Q 028256 91 --TGDT-------VGEVKAVSGMHQRKAEMARQADAFIALPGG--YGTLEELLEVITWAQLGIHDKPVGLLNV 152 (211)
Q Consensus 91 --~~~~-------~~~~~~~~~~~~Rk~~m~~~sDa~IvlpGG--~GTL~El~~~~~~~~lg~~~kPiill~~ 152 (211)
..+. ...-....+|..||+++...||++||+-.+ +|+|.=.-.++. .++.|+.+-+
T Consensus 189 ~i~~~g~liSEypp~~~p~~~~Fp~RNRiIagLS~gvlVvEA~~kSGSLiTA~~Ale------qgR~VfavPg 255 (350)
T COG0758 189 KIAENGLLISEYPPDTEPNKGNFPRRNRLIAGLSDGVLVVEAGLKSGSLITAKYALE------QGRDVFAVPG 255 (350)
T ss_pred HHHhcCeEEeecCCCCCcccccchHHHHHHHHhcCceEEEecCcccccHHHHHHHHH------cCCeeEEcCC
Confidence 0111 011223457899999999999999999777 699887777776 6788887744
No 9
>PF12694 MoCo_carrier: Putative molybdenum carrier; InterPro: IPR024755 The structure of proteins in this family contain central beta strands with flanking alpha helices. The structure is similar to that of a molybdenum cofactor carrier protein.; PDB: 3IMK_A.
Probab=97.26 E-value=0.0055 Score=48.98 Aligned_cols=94 Identities=21% Similarity=0.219 Sum_probs=51.9
Q ss_pred EEecCCCCChhHHHHHHHHhcCCeEEEEecCcCCCCC-CCCCCCc-eeeecCCHHHHHHHHHHhcCEEEEecCC-c--Cc
Q 028256 53 LVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPRE-ITGDTVG-EVKAVSGMHQRKAEMARQADAFIALPGG-Y--GT 127 (211)
Q Consensus 53 lv~GGg~~GlM~a~a~gA~~~gG~viGv~P~~~~~~e-~~~~~~~-~~~~~~~~~~Rk~~m~~~sDa~IvlpGG-~--GT 127 (211)
||+||- .|+..|+-+.|+++|-..=|-.|......+ ..+..|. ......+...|.+..++.||+.++|-=| . ||
T Consensus 1 IiSGGQ-TGvDRAALDaAi~~gi~~GGWcP~GR~aEDG~ip~~Y~L~E~~~~~Y~~RT~~NV~DsDgTlI~~~g~l~GGt 79 (145)
T PF12694_consen 1 IISGGQ-TGVDRAALDAAIAHGIPHGGWCPKGRRAEDGPIPARYPLQETPSSGYRQRTEWNVRDSDGTLIFTRGELTGGT 79 (145)
T ss_dssp EE-----TTHHHHHHHHHHHTT--EE-EE-GGG--TTSS--TTS--EE-SS--HHHHHHHHHHTSSEEEEEESSS--HHH
T ss_pred CccCcc-ccHHHHHHHHHHHcCCCccCcCCCCcccccCcCCccccceecCCCCHHHHHHhhhhhcCeEEEEecCCCCcHH
Confidence 688885 599999999999999888888886543322 1122221 2233577899999999999997776533 2 55
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEEeCC
Q 028256 128 LEELLEVITWAQLGIHDKPVGLLNVD 153 (211)
Q Consensus 128 L~El~~~~~~~~lg~~~kPiill~~~ 153 (211)
..=+..+- .+.||+.+++..
T Consensus 80 ~lT~~~a~------~~~KP~l~i~~~ 99 (145)
T PF12694_consen 80 ALTVEFAR------KHGKPCLHIDLS 99 (145)
T ss_dssp HHHHHHHH------HTT--EEEETS-
T ss_pred HHHHHHHH------HhCCCEEEEecC
Confidence 33332222 388999998654
No 10
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.98 E-value=0.16 Score=52.87 Aligned_cols=175 Identities=19% Similarity=0.206 Sum_probs=102.6
Q ss_pred ceEEEEeCCCCCC-CHHHHHHHHH-HHHHHHHcCCeEEecCCCCChhHHHHHHHHhcC-----CeE--EEEecCcCCC--
Q 028256 19 KRVCVFCGSSPGK-SPSYQLAAIQ-LGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGG-----RHV--LGVIPKTLMP-- 87 (211)
Q Consensus 19 ~~I~Vfggs~~~~-~~~~~~~A~~-lG~~la~~g~~lv~GGg~~GlM~a~a~gA~~~g-----G~v--iGv~P~~~~~-- 87 (211)
-.|.|-||...-. .|.+.+.-++ |-+..-..|-=|+|||-..|+|.-+.+++++++ +++ |||-|-....
T Consensus 119 LvISV~GG~~nF~L~pkl~~~frkGLvkaAqtTGAWIiTsG~~tGv~khVg~Al~dh~~~s~~~~ivaiGiApWGvv~nr 198 (1381)
T KOG3614|consen 119 LVISVHGGLQNFELQPKLKSVFRKGLIKAAQTTGAWIITSGLDTGVMKHVGSALRDHSLASSGGKIVAIGIAPWGIVKNR 198 (1381)
T ss_pred EEEEEecCCCCccccHHHHHHHHHHHHHHHhhcCeEEEecCcccchHHHHHHHHHhccchhccCceEEEeeccceeeech
Confidence 3589998887654 4555443333 333333479999999999999999999999864 233 6665522110
Q ss_pred ---------C-----CCC-------CCCCceeeecCC---------HHHHHHHHHHh------cC-------EEEEecCC
Q 028256 88 ---------R-----EIT-------GDTVGEVKAVSG---------MHQRKAEMARQ------AD-------AFIALPGG 124 (211)
Q Consensus 88 ---------~-----e~~-------~~~~~~~~~~~~---------~~~Rk~~m~~~------sD-------a~IvlpGG 124 (211)
. +.+ ++..+..+.+++ ..-|+++=--. +. +.+++.||
T Consensus 199 ~~lI~~d~~~~Y~~~~~~~~~L~~Ln~nhShFiLvDnGTvGkygae~~lR~~LEk~Is~q~~~~~~~~~iPvvc~v~eGg 278 (1381)
T KOG3614|consen 199 DDLIGGDFTVSYQTDDNPLNKLTILNNNHSHFILVDNGTVGKYGAETKLRLRLEKYISLQKINSGGTGKIPVVCLVLEGG 278 (1381)
T ss_pred hhhccCCcceeeeecCCCCcceeeccCCCceeEEecCCccCccchHHHHHHhchhhHhhhccCCCCCCccceEEEEecCC
Confidence 0 000 111122222221 22333321100 11 47888999
Q ss_pred cCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHH-HHHHHcCCCCcccccc-eEE--------cCCHHHHHHHhh
Q 028256 125 YGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFI-DKAVDEGFIAPAARYI-IVS--------AQTAHELICKLE 194 (211)
Q Consensus 125 ~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l-~~~~~~g~i~~~~~~~-i~~--------~~d~ee~~~~l~ 194 (211)
.+|+.=+.+..+ ...+.|++++.+.|--.++++++ +.....|.++...... +.+ -.|.++++.+|.
T Consensus 279 ~nti~~I~~~v~----~~~~iPvvVc~GSGraADilA~~~~~~~~~g~l~~~~~~~i~~~i~~~~~fs~~d~~~l~~~l~ 354 (1381)
T KOG3614|consen 279 PNTLAIILDYVT----DKPPIPVVVCAGSGRAADILAFAHEEHGAPGILSDAEREQILHLIRLTFEFSEFDAEKLIKWLR 354 (1381)
T ss_pred chHHHHHHHHhc----cCCCCceEEEcCCchHHHHHHHHHHhhcCCCcccHHHHHHHHHhHHHHccCCHHHHHHHHHHHH
Confidence 999998877665 12345999999999888898887 5555667766554432 111 234555566665
Q ss_pred hhc
Q 028256 195 VFF 197 (211)
Q Consensus 195 ~~~ 197 (211)
+..
T Consensus 355 ec~ 357 (1381)
T KOG3614|consen 355 ECL 357 (1381)
T ss_pred HHh
Confidence 543
No 11
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=95.79 E-value=0.025 Score=42.60 Aligned_cols=46 Identities=37% Similarity=0.341 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHhcCEEEEecCC----cCcHHHHHHHHHHHHhCCCCCcEEEEeCC
Q 028256 102 SGMHQRKAEMARQADAFIALPGG----YGTLEELLEVITWAQLGIHDKPVGLLNVD 153 (211)
Q Consensus 102 ~~~~~Rk~~m~~~sDa~IvlpGG----~GTL~El~~~~~~~~lg~~~kPiill~~~ 153 (211)
....+|....++.||++|+.-.+ .||.-|+-.++. .+|||+++..+
T Consensus 49 ~~i~~~d~~~i~~~D~via~l~~~~~d~Gt~~ElG~A~a------lgkpv~~~~~d 98 (113)
T PF05014_consen 49 REIFERDLEGIRECDIVIANLDGFRPDSGTAFELGYAYA------LGKPVILLTED 98 (113)
T ss_dssp HHHHHHHHHHHHHSSEEEEEECSSS--HHHHHHHHHHHH------TTSEEEEEECC
T ss_pred HHHHHHHHHHHHHCCEEEEECCCCCCCCcHHHHHHHHHH------CCCEEEEEEcC
Confidence 34578888899999998887665 899999999998 68999999764
No 12
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=95.45 E-value=0.96 Score=37.32 Aligned_cols=90 Identities=22% Similarity=0.306 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHHHHH---HHcCCeE-EecCCCCChhHHHHHHHHhcC-----CeEEEEecCcCCCCCCCCC--------
Q 028256 31 KSPSYQLAAIQLGKQL---VERNIDL-VYGGGSIGLMGLVSQAVYDGG-----RHVLGVIPKTLMPREITGD-------- 93 (211)
Q Consensus 31 ~~~~~~~~A~~lG~~l---a~~g~~l-v~GGg~~GlM~a~a~gA~~~g-----G~viGv~P~~~~~~e~~~~-------- 93 (211)
.+|.+...-..|-+.| -++|++- ++|| -.|+.--+++.+++.. -+.+-++|-...+..+...
T Consensus 20 ~~~~~~~ik~~L~~~i~~lie~G~~~fi~Gg-alG~D~waae~vl~LK~~yp~ikL~~v~Pf~~q~~~W~~~~q~~y~~i 98 (177)
T PF06908_consen 20 KDPKIQVIKKALKKQIIELIEEGVRWFITGG-ALGVDLWAAEVVLELKKEYPEIKLALVLPFENQGNNWNEANQERYQSI 98 (177)
T ss_dssp --HHHHHHHHHHHHHHHHHHTTT--EEEE----TTHHHHHHHHHHTTTTT-TT-EEEEEESSB-TTTTS-HHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHCCCCEEEECC-cccHHHHHHHHHHHHHhhhhheEEEEEEcccchhhcCCHHHHHHHHHH
Confidence 3565554445555433 4578866 5555 5699999999998864 3556667743322211100
Q ss_pred --CCceeeec--------CCHHHHHHHHHHhcCEEEEe
Q 028256 94 --TVGEVKAV--------SGMHQRKAEMARQADAFIAL 121 (211)
Q Consensus 94 --~~~~~~~~--------~~~~~Rk~~m~~~sDa~Ivl 121 (211)
..+.++.. .-|..|++.|+++||.+|++
T Consensus 99 l~~aD~v~~vs~~~Y~~~~~~~~rn~fMvdhsd~~iav 136 (177)
T PF06908_consen 99 LEQADFVVVVSERPYYSPGQLQKRNRFMVDHSDGLIAV 136 (177)
T ss_dssp HHH-SEEEESSSSB---HHHHHHHHHHHHHHSSEEEEE
T ss_pred HHhCCEEEEccCCCCCCHHHHHHHhHHHHhCCCeEEEE
Confidence 01222222 23579999999999998887
No 13
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=94.55 E-value=1.3 Score=38.41 Aligned_cols=123 Identities=24% Similarity=0.250 Sum_probs=66.2
Q ss_pred cCCeEEecCCCCChhHHHHHHHHhcCC-eEEEEecCcCCCCCCCCCCCceeeecCCHHHHHHHHHHhcCEEEEecCCcCc
Q 028256 49 RNIDLVYGGGSIGLMGLVSQAVYDGGR-HVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGT 127 (211)
Q Consensus 49 ~g~~lv~GGg~~GlM~a~a~gA~~~gG-~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~Rk~~m~~~sDa~IvlpGG~GT 127 (211)
.++.|||=||. |.- .+.+.+.+..+ .++-+-+.. . +.....+. +.-.. ...-.-++..||++|-- ||.+|
T Consensus 192 ~~~iLv~~gg~-~~~-~~~~~l~~~~~~~~~v~g~~~--~-~~~~~ni~-~~~~~--~~~~~~~m~~ad~vIs~-~G~~t 262 (318)
T PF13528_consen 192 EPKILVYFGGG-GPG-DLIEALKALPDYQFIVFGPNA--A-DPRPGNIH-VRPFS--TPDFAELMAAADLVISK-GGYTT 262 (318)
T ss_pred CCEEEEEeCCC-cHH-HHHHHHHhCCCCeEEEEcCCc--c-cccCCCEE-EeecC--hHHHHHHHHhCCEEEEC-CCHHH
Confidence 46677777664 555 55566666554 333332221 1 11112211 11111 12223346788966654 88999
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCCCcccccceEEcC-CHHHHHHHhhh
Q 028256 128 LEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQ-TAHELICKLEV 195 (211)
Q Consensus 128 L~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~-d~ee~~~~l~~ 195 (211)
+.|... .++|++++-..+.++.... .+.+.+.|... .+...+ +++.+.++|++
T Consensus 263 ~~Ea~~---------~g~P~l~ip~~~~~EQ~~~-a~~l~~~G~~~-----~~~~~~~~~~~l~~~l~~ 316 (318)
T PF13528_consen 263 ISEALA---------LGKPALVIPRPGQDEQEYN-ARKLEELGLGI-----VLSQEDLTPERLAEFLER 316 (318)
T ss_pred HHHHHH---------cCCCEEEEeCCCCchHHHH-HHHHHHCCCeE-----EcccccCCHHHHHHHHhc
Confidence 888763 6899999977666665443 23454555432 111111 67888888765
No 14
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=94.27 E-value=0.84 Score=36.08 Aligned_cols=71 Identities=17% Similarity=0.181 Sum_probs=49.5
Q ss_pred HHHHHHHHHhcCEEEEecCC----cCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCCCcccccce
Q 028256 105 HQRKAEMARQADAFIALPGG----YGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYII 180 (211)
Q Consensus 105 ~~Rk~~m~~~sDa~IvlpGG----~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i 180 (211)
.-|-+.+++.||.+||.-|- ..|--....+.+ .+||+|++.....-.+|.+. +. ...
T Consensus 63 ~iRT~~li~~aDvVVvrFGekYKQWNaAfDAg~a~A------lgKplI~lh~~~~~HpLKEv-da------------~A~ 123 (141)
T PF11071_consen 63 AIRTRTLIEKADVVVVRFGEKYKQWNAAFDAGYAAA------LGKPLITLHPEELHHPLKEV-DA------------AAL 123 (141)
T ss_pred HHHHHHHHhhCCEEEEEechHHHHHHHHhhHHHHHH------cCCCeEEecchhccccHHHH-hH------------hhH
Confidence 57889999999999998775 233323333333 58999999877666666552 21 224
Q ss_pred EEcCCHHHHHHHhh
Q 028256 181 VSAQTAHELICKLE 194 (211)
Q Consensus 181 ~~~~d~ee~~~~l~ 194 (211)
.++++|+.+++.|.
T Consensus 124 a~~et~~Qvv~iL~ 137 (141)
T PF11071_consen 124 AVAETPEQVVEILR 137 (141)
T ss_pred hhhCCHHHHHHHHH
Confidence 66999999999885
No 15
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=93.74 E-value=4.3 Score=35.30 Aligned_cols=72 Identities=17% Similarity=0.117 Sum_probs=38.5
Q ss_pred HHHHhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCCCcccccceEEcC--CHH
Q 028256 110 EMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQ--TAH 187 (211)
Q Consensus 110 ~m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~--d~e 187 (211)
-++..||++|. ++|..|+-|. ++ .++|++..+..+.-.....-.+.+.+. ....+.-.. +++
T Consensus 246 ~~l~~ad~~v~-~~g~~~l~Ea---~~------~g~Pvv~~~~~~~~~~~~~~~~~i~~~------~~G~~~~~~~~~~~ 309 (348)
T TIGR01133 246 AAYAAADLVIS-RAGASTVAEL---AA------AGVPAILIPYPYAADDQYYNAKFLEDL------GAGLVIRQKELLPE 309 (348)
T ss_pred HHHHhCCEEEE-CCChhHHHHH---HH------cCCCEEEeeCCCCccchhhHHHHHHHC------CCEEEEecccCCHH
Confidence 46788998886 5554565554 44 689999986543222211000112111 111222233 488
Q ss_pred HHHHHhhhhc
Q 028256 188 ELICKLEVFF 197 (211)
Q Consensus 188 e~~~~l~~~~ 197 (211)
++.+.|.+..
T Consensus 310 ~l~~~i~~ll 319 (348)
T TIGR01133 310 KLLEALLKLL 319 (348)
T ss_pred HHHHHHHHHH
Confidence 8888887655
No 16
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=93.13 E-value=5.2 Score=36.52 Aligned_cols=40 Identities=28% Similarity=0.236 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeC
Q 028256 103 GMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 152 (211)
Q Consensus 103 ~~~~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~ 152 (211)
.|.......+..||.+| --.|..|+.|+.. .++|.|++-.
T Consensus 241 ~f~~dm~~~~~~ADLvI-sRaGa~Ti~E~~a---------~g~P~IliP~ 280 (357)
T COG0707 241 PFIDDMAALLAAADLVI-SRAGALTIAELLA---------LGVPAILVPY 280 (357)
T ss_pred eHHhhHHHHHHhccEEE-eCCcccHHHHHHH---------hCCCEEEeCC
Confidence 34444556678899555 5566689999973 5899999854
No 17
>PRK13660 hypothetical protein; Provisional
Probab=92.83 E-value=4.9 Score=33.37 Aligned_cols=107 Identities=14% Similarity=0.107 Sum_probs=57.3
Q ss_pred HHHHHHHHcCCeE-EecCCCCChhHHHHHHHHhcC-----CeEEEEecCcCCCCCCCC----------CCCceeee----
Q 028256 41 QLGKQLVERNIDL-VYGGGSIGLMGLVSQAVYDGG-----RHVLGVIPKTLMPREITG----------DTVGEVKA---- 100 (211)
Q Consensus 41 ~lG~~la~~g~~l-v~GGg~~GlM~a~a~gA~~~g-----G~viGv~P~~~~~~e~~~----------~~~~~~~~---- 100 (211)
+|-+.+ +.|+.- ++|| -.|+---+++-|++.. -+.+-++|-......+.. ...+.+..
T Consensus 34 ~l~~~~-e~G~~wfi~gg-alG~d~wAaEvvl~LK~~yp~lkL~~~~PF~~q~~~W~e~~q~~y~~i~~~aD~v~~vs~~ 111 (182)
T PRK13660 34 KLIALL-EEGLEWVIISG-QLGVELWAAEVVLELKEEYPDLKLAVITPFEEHGENWNEANQEKLANILKQADFVKSISKR 111 (182)
T ss_pred HHHHHH-HCCCCEEEECC-cchHHHHHHHHHHHHHhhCCCeEEEEEeCccchhhcCCHHHHHHHHHHHHhCCEEEEecCC
Confidence 333333 467765 5555 5699988888888753 345666773322211110 01111211
Q ss_pred ----cCCHHHHHHHHHHhcCEEEEecCC---cCcHHHHHHHHHHHHhCCCCCcEEEEe
Q 028256 101 ----VSGMHQRKAEMARQADAFIALPGG---YGTLEELLEVITWAQLGIHDKPVGLLN 151 (211)
Q Consensus 101 ----~~~~~~Rk~~m~~~sDa~IvlpGG---~GTL~El~~~~~~~~lg~~~kPiill~ 151 (211)
..-|..|++.|+++||.+|++=-| .||---+- .+..+-..++.||.++.
T Consensus 112 ~y~~p~q~~~rn~fmv~~sd~~i~~YD~e~~Ggt~y~~~--~A~k~~~~~~y~i~~I~ 167 (182)
T PRK13660 112 PYESPAQFRQYNQFMLEHTDGALLVYDEENEGSPKYFYE--AAKKKQEKEDYPLDLIT 167 (182)
T ss_pred CCCChHHHHHHHHHHHHccCeEEEEEcCCCCCChHHHHH--HHHHhhhccCceEEEeC
Confidence 112789999999999998887322 23422111 11111113578888874
No 18
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=92.68 E-value=4.9 Score=35.91 Aligned_cols=78 Identities=15% Similarity=0.256 Sum_probs=56.4
Q ss_pred HHHhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCCCccccc--c-----eEEc
Q 028256 111 MARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARY--I-----IVSA 183 (211)
Q Consensus 111 m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~--~-----i~~~ 183 (211)
++..||++||-+-++-=+.|. ++ .++||.++...+--+.+..|++.|.+.|.+..-... . ..-.
T Consensus 225 ~La~ad~i~VT~DSvSMvsEA---~~------tG~pV~v~~l~~~~~r~~r~~~~L~~~g~~r~~~~~~~~~~~~~~~pl 295 (311)
T PF06258_consen 225 FLAAADAIVVTEDSVSMVSEA---AA------TGKPVYVLPLPGRSGRFRRFHQSLEERGAVRPFTGWRDLEQWTPYEPL 295 (311)
T ss_pred HHHhCCEEEEcCccHHHHHHH---HH------cCCCEEEecCCCcchHHHHHHHHHHHCCCEEECCCcccccccccCCCc
Confidence 678899999998876665554 44 689999998877556677788899999988654333 1 3445
Q ss_pred CCHHHHHHHhhhhc
Q 028256 184 QTAHELICKLEVFF 197 (211)
Q Consensus 184 ~d~ee~~~~l~~~~ 197 (211)
++.+.+.+.|.+.+
T Consensus 296 ~et~r~A~~i~~r~ 309 (311)
T PF06258_consen 296 DETDRVAAEIRERL 309 (311)
T ss_pred cHHHHHHHHHHHHh
Confidence 66677777776544
No 19
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=92.66 E-value=1.3 Score=31.02 Aligned_cols=63 Identities=21% Similarity=0.208 Sum_probs=45.7
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEecCCCCChhHHHHHHHHhcCCeEEEEecCc
Q 028256 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVER-NIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKT 84 (211)
Q Consensus 19 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~-g~~lv~GGg~~GlM~a~a~gA~~~gG~viGv~P~~ 84 (211)
++|.| +|++.-.|.. ..-..|-+.+++. ...||+||.+.|....+.+=|.+.|-.++-+-|+.
T Consensus 4 ~rVli-~GgR~~~D~~--~i~~~Ld~~~~~~~~~~lvhGga~~GaD~iA~~wA~~~gv~~~~~~adW 67 (71)
T PF10686_consen 4 MRVLI-TGGRDWTDHE--LIWAALDKVHARHPDMVLVHGGAPKGADRIAARWARERGVPVIRFPADW 67 (71)
T ss_pred CEEEE-EECCccccHH--HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHHHCCCeeEEeCcCh
Confidence 34555 4667655543 3445677777775 56789999856999999999999988888776653
No 20
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=92.55 E-value=2.3 Score=33.71 Aligned_cols=71 Identities=23% Similarity=0.258 Sum_probs=48.1
Q ss_pred HHHHHHHHHhcCEEEEecCC-c---CcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCCCcccccce
Q 028256 105 HQRKAEMARQADAFIALPGG-Y---GTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYII 180 (211)
Q Consensus 105 ~~Rk~~m~~~sDa~IvlpGG-~---GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i 180 (211)
.-|-+.+++.||.+||.-|- + .+--....+.+ .+||+|++.....-.+|.+. +. ...
T Consensus 66 aiRT~~li~~aDvvVvrFGekYKQWNaAfDAg~aaA------lgKplI~lh~~~~~HpLKEv-da------------aA~ 126 (144)
T TIGR03646 66 NIRTRKLIEKADVVIALFGEKYKQWNAAFDAGYAAA------LGKPLIILRPEELIHPLKEV-DN------------KAQ 126 (144)
T ss_pred hHHHHHHHhhCCEEEEEechHHHHHHHHhhHHHHHH------cCCCeEEecchhccccHHHH-hH------------HHH
Confidence 57888899999999998775 1 22222222223 58999999876665566552 21 124
Q ss_pred EEcCCHHHHHHHhh
Q 028256 181 VSAQTAHELICKLE 194 (211)
Q Consensus 181 ~~~~d~ee~~~~l~ 194 (211)
.++++|+.+++.|.
T Consensus 127 avaetp~Qvv~iL~ 140 (144)
T TIGR03646 127 AVVETPEQAIETLK 140 (144)
T ss_pred HHhcCHHHHHHHHH
Confidence 56899999999885
No 21
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=92.51 E-value=6.3 Score=35.08 Aligned_cols=135 Identities=16% Similarity=0.133 Sum_probs=81.0
Q ss_pred hcCcceEEEEeCCCCCCCHHHHHHHHHHHHH----HHHcCCeEEecCCCCChhHHHHHHHHhcCCeEEEE-ecCcCCCCC
Q 028256 15 KSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQ----LVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGV-IPKTLMPRE 89 (211)
Q Consensus 15 ~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~----la~~g~~lv~GGg~~GlM~a~a~gA~~~gG~viGv-~P~~~~~~e 89 (211)
+...+.|+|+-|...+.-+-..+.|.++... |.+.|+.++-.-+. =-.+.+..--..+=-.+-|+ -|+. +
T Consensus 158 p~~rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~~g~~~lisfSR-RTp~~~~s~l~~~l~s~~~i~w~~~----d 232 (329)
T COG3660 158 PLPRQRVAVLVGGNNKAFVFQEDKAHQFASLLVKILENQGGSFLISFSR-RTPDTVKSILKNNLNSSPGIVWNNE----D 232 (329)
T ss_pred CCCCceEEEEecCCCCCCccCHHHHHHHHHHHHHHHHhCCceEEEEeec-CCcHHHHHHHHhccccCceeEeCCC----C
Confidence 5556789998887766422223445555444 45578877666654 44444333222211122233 2222 1
Q ss_pred CCCCCCceeeecCCHHHHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCcc-chhHHHHHHHHHH
Q 028256 90 ITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGY-YNSLLSFIDKAVD 168 (211)
Q Consensus 90 ~~~~~~~~~~~~~~~~~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~~g~-~~~l~~~l~~~~~ 168 (211)
...|+|. -|+..||++|+---++.-..|.. + .+|||.++-.+++ -+.+.-|++.+++
T Consensus 233 ~g~NPY~-------------~~La~Adyii~TaDSinM~sEAa---s------TgkPv~~~~~~~~~s~K~r~Fi~~L~e 290 (329)
T COG3660 233 TGYNPYI-------------DMLAAADYIISTADSINMCSEAA---S------TGKPVFILEPPNFNSLKFRIFIEQLVE 290 (329)
T ss_pred CCCCchH-------------HHHhhcceEEEecchhhhhHHHh---c------cCCCeEEEecCCcchHHHHHHHHHHHH
Confidence 2234432 26788999999888887776654 3 6899999988888 6677778888887
Q ss_pred cCCCCccc
Q 028256 169 EGFIAPAA 176 (211)
Q Consensus 169 ~g~i~~~~ 176 (211)
.+....-.
T Consensus 291 q~~AR~f~ 298 (329)
T COG3660 291 QKIARPFE 298 (329)
T ss_pred hhhccccC
Confidence 66554433
No 22
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=92.37 E-value=3.4 Score=37.17 Aligned_cols=71 Identities=21% Similarity=0.247 Sum_probs=41.3
Q ss_pred HHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCCCcccccceEEcCCH
Q 028256 107 RKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTA 186 (211)
Q Consensus 107 Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ 186 (211)
.-..++..||++|.-+| .+|+.|. ++ .++|+++.+.-. ..+.-+ .+.+.+.|. -....|+
T Consensus 275 ~~~~l~~aaDv~V~~~g-~~ti~EA---ma------~g~PvI~~~~~p-gqe~gn-~~~i~~~g~--------g~~~~~~ 334 (382)
T PLN02605 275 NMEEWMGACDCIITKAG-PGTIAEA---LI------RGLPIILNGYIP-GQEEGN-VPYVVDNGF--------GAFSESP 334 (382)
T ss_pred cHHHHHHhCCEEEECCC-cchHHHH---HH------cCCCEEEecCCC-ccchhh-HHHHHhCCc--------eeecCCH
Confidence 34457799999887555 4786554 45 689999987411 011100 112222232 1234888
Q ss_pred HHHHHHhhhhc
Q 028256 187 HELICKLEVFF 197 (211)
Q Consensus 187 ee~~~~l~~~~ 197 (211)
+++.+.|.+..
T Consensus 335 ~~la~~i~~ll 345 (382)
T PLN02605 335 KEIARIVAEWF 345 (382)
T ss_pred HHHHHHHHHHH
Confidence 88888887654
No 23
>PRK10565 putative carbohydrate kinase; Provisional
Probab=92.00 E-value=0.9 Score=43.32 Aligned_cols=99 Identities=19% Similarity=0.148 Sum_probs=54.2
Q ss_pred cCCeEEecCCCCChhHH---HHHHHHhcC-CeEEEEecCcCCCCCCCCCCCceeeecCCHHHHHHHHHHhcCEEEEecCC
Q 028256 49 RNIDLVYGGGSIGLMGL---VSQAVYDGG-RHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGG 124 (211)
Q Consensus 49 ~g~~lv~GGg~~GlM~a---~a~gA~~~g-G~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~Rk~~m~~~sDa~IvlpGG 124 (211)
+|+.+|.||+. +.++| ++++|++.| |.|.-+.|....+ .......|+++.....+.-.-++..+|++++=||
T Consensus 254 ~G~vliigGs~-~~~GA~~Laa~aAlr~GaGlv~~~~~~~~~~--~~~~~~Pe~~~~~~~~~~~~~~~~~~~a~viGpG- 329 (508)
T PRK10565 254 HGRLLIIGGDH-GTAGAIRMAGEAALRSGAGLVRVLTRSENIA--PLLTARPELMVHELTPDSLEESLEWADVVVIGPG- 329 (508)
T ss_pred CCeEEEEECCC-CCccHHHHHHHHHHHhCCCeEEEEeChhhHH--HHhhcCceeEEecCCHhHHHHHhhcCCEEEEeCC-
Confidence 68899999965 66666 467777777 5665555643211 1111122333322111112223477898887776
Q ss_pred cCcHHHHHHHHHHHHhCCCCCcEEEEeCCc
Q 028256 125 YGTLEELLEVITWAQLGIHDKPVGLLNVDG 154 (211)
Q Consensus 125 ~GTL~El~~~~~~~~lg~~~kPiill~~~g 154 (211)
.|+-++...++.. +...++|+| ++.++
T Consensus 330 lg~~~~~~~~~~~--~~~~~~P~V-LDAda 356 (508)
T PRK10565 330 LGQQEWGKKALQK--VENFRKPML-WDADA 356 (508)
T ss_pred CCCCHHHHHHHHH--HHhcCCCEE-EEchH
Confidence 6775555443322 223467875 57765
No 24
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=91.43 E-value=9.1 Score=34.45 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=23.4
Q ss_pred HHHHhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEE
Q 028256 110 EMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLL 150 (211)
Q Consensus 110 ~m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill 150 (211)
.++..||+ ++--||.+|+.|+.. .++|++++
T Consensus 248 ~~~~~adl-vIsr~G~~t~~E~~~---------~g~P~I~i 278 (352)
T PRK12446 248 DILAITDF-VISRAGSNAIFEFLT---------LQKPMLLI 278 (352)
T ss_pred HHHHhCCE-EEECCChhHHHHHHH---------cCCCEEEE
Confidence 46788994 555666788888863 68999998
No 25
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=91.39 E-value=9 Score=33.28 Aligned_cols=76 Identities=18% Similarity=0.185 Sum_probs=40.2
Q ss_pred HHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCcc-chhHHHHHHHHHHcCCCCcccccceEEcC
Q 028256 106 QRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGY-YNSLLSFIDKAVDEGFIAPAARYIIVSAQ 184 (211)
Q Consensus 106 ~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~~g~-~~~l~~~l~~~~~~g~i~~~~~~~i~~~~ 184 (211)
..-..++..||++|. ++|..|+.| +++ .++|++.....+. .+.-....+.+.+.|. ..+.-.+
T Consensus 244 ~~~~~~l~~ad~~v~-~sg~~t~~E---am~------~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~------g~~v~~~ 307 (350)
T cd03785 244 DDMAAAYAAADLVIS-RAGASTVAE---LAA------LGLPAILIPLPYAADDHQTANARALVKAGA------AVLIPQE 307 (350)
T ss_pred hhHHHHHHhcCEEEE-CCCHhHHHH---HHH------hCCCEEEeecCCCCCCcHHHhHHHHHhCCC------EEEEecC
Confidence 334456789998885 555566444 455 6899998754321 1110000122222221 1122222
Q ss_pred --CHHHHHHHhhhhc
Q 028256 185 --TAHELICKLEVFF 197 (211)
Q Consensus 185 --d~ee~~~~l~~~~ 197 (211)
|++++.+.|.++.
T Consensus 308 ~~~~~~l~~~i~~ll 322 (350)
T cd03785 308 ELTPERLAAALLELL 322 (350)
T ss_pred CCCHHHHHHHHHHHh
Confidence 7888888887664
No 26
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=90.98 E-value=2.6 Score=37.39 Aligned_cols=31 Identities=35% Similarity=0.293 Sum_probs=22.4
Q ss_pred HHHHHhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEE
Q 028256 109 AEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLL 150 (211)
Q Consensus 109 ~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill 150 (211)
..+...||++|. ++|..|+ |.. . .++|+++.
T Consensus 256 ~~~~~~aDl~v~-~sG~~~l-Ea~---a------~G~PvI~~ 286 (380)
T PRK00025 256 REAMAAADAALA-ASGTVTL-ELA---L------LKVPMVVG 286 (380)
T ss_pred HHHHHhCCEEEE-CccHHHH-HHH---H------hCCCEEEE
Confidence 456789997766 6777776 553 3 58999876
No 27
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=90.87 E-value=11 Score=33.49 Aligned_cols=71 Identities=24% Similarity=0.228 Sum_probs=40.8
Q ss_pred HHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccch-hHHHHHHHHHHcCCCCcccccceEEcC
Q 028256 106 QRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYN-SLLSFIDKAVDEGFIAPAARYIIVSAQ 184 (211)
Q Consensus 106 ~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~-~l~~~l~~~~~~g~i~~~~~~~i~~~~ 184 (211)
+.-..++..||++|.-+|| .|+.| +++ .++|+++.+..+-.. .... .+.+.|+ .....
T Consensus 265 ~~~~~l~~~aD~~v~~~gg-~t~~E---A~a------~g~PvI~~~~~~g~~~~n~~---~~~~~G~--------~~~~~ 323 (380)
T PRK13609 265 ENIDELFRVTSCMITKPGG-ITLSE---AAA------LGVPVILYKPVPGQEKENAM---YFERKGA--------AVVIR 323 (380)
T ss_pred hhHHHHHHhccEEEeCCCc-hHHHH---HHH------hCCCEEECCCCCCcchHHHH---HHHhCCc--------EEEEC
Confidence 3344567899988765554 45444 455 689999876422111 1111 2223343 33467
Q ss_pred CHHHHHHHhhhhc
Q 028256 185 TAHELICKLEVFF 197 (211)
Q Consensus 185 d~ee~~~~l~~~~ 197 (211)
|++++.+.|.+..
T Consensus 324 ~~~~l~~~i~~ll 336 (380)
T PRK13609 324 DDEEVFAKTEALL 336 (380)
T ss_pred CHHHHHHHHHHHH
Confidence 8888888777654
No 28
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=90.75 E-value=5.8 Score=35.53 Aligned_cols=70 Identities=17% Similarity=0.163 Sum_probs=40.1
Q ss_pred HHHHhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCCCcccccceEEcCCHHHH
Q 028256 110 EMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHEL 189 (211)
Q Consensus 110 ~m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee~ 189 (211)
.++..||+|| -.||.||..|... +++|++++-. +.|.. .+.+.+.+.|.-..-.... -+++++
T Consensus 300 ~ll~~~d~~I-~hgG~~t~~eal~---------~GvP~v~~P~--~~dQ~-~~a~~~~~~G~g~~l~~~~----~~~~~l 362 (401)
T cd03784 300 WLLPRCAAVV-HHGGAGTTAAALR---------AGVPQLVVPF--FGDQP-FWAARVAELGAGPALDPRE----LTAERL 362 (401)
T ss_pred HHhhhhheee-ecCCchhHHHHHH---------cCCCEEeeCC--CCCcH-HHHHHHHHCCCCCCCCccc----CCHHHH
Confidence 3467789766 7788999888763 7899999843 23422 2234555555321101111 256666
Q ss_pred HHHhhhh
Q 028256 190 ICKLEVF 196 (211)
Q Consensus 190 ~~~l~~~ 196 (211)
.+.+++.
T Consensus 363 ~~al~~~ 369 (401)
T cd03784 363 AAALRRL 369 (401)
T ss_pred HHHHHHH
Confidence 6666544
No 29
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=90.32 E-value=6.9 Score=35.48 Aligned_cols=72 Identities=24% Similarity=0.213 Sum_probs=41.3
Q ss_pred HHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCCCcccccceEEcCC
Q 028256 106 QRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQT 185 (211)
Q Consensus 106 ~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d 185 (211)
++-..++..||++|.-|||. |+.|. ++ .++|+++.+..+- ++..+- .-+.+.|+ -...+|
T Consensus 265 ~~~~~~~~~aDl~I~k~gg~-tl~EA---~a------~G~PvI~~~~~pg-qe~~N~-~~~~~~G~--------g~~~~~ 324 (391)
T PRK13608 265 KHMNEWMASSQLMITKPGGI-TISEG---LA------RCIPMIFLNPAPG-QELENA-LYFEEKGF--------GKIADT 324 (391)
T ss_pred chHHHHHHhhhEEEeCCchH-HHHHH---HH------hCCCEEECCCCCC-cchhHH-HHHHhCCc--------EEEeCC
Confidence 44556789999998877764 65544 45 6899999864211 111110 11122232 233567
Q ss_pred HHHHHHHhhhhc
Q 028256 186 AHELICKLEVFF 197 (211)
Q Consensus 186 ~ee~~~~l~~~~ 197 (211)
++++.+.|.+..
T Consensus 325 ~~~l~~~i~~ll 336 (391)
T PRK13608 325 PEEAIKIVASLT 336 (391)
T ss_pred HHHHHHHHHHHh
Confidence 777777766554
No 30
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=89.90 E-value=6.2 Score=34.31 Aligned_cols=36 Identities=25% Similarity=0.206 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeC
Q 028256 106 QRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 152 (211)
Q Consensus 106 ~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~ 152 (211)
..-.-++..||.+|. .|| +|+-|+. + .++|++++-.
T Consensus 233 ~~m~~lm~~aDl~Is-~~G-~T~~E~~---a------~g~P~i~i~~ 268 (279)
T TIGR03590 233 ENMAELMNEADLAIG-AAG-STSWERC---C------LGLPSLAICL 268 (279)
T ss_pred HHHHHHHHHCCEEEE-CCc-hHHHHHH---H------cCCCEEEEEe
Confidence 344456788998888 666 8977775 3 5899998854
No 31
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=88.71 E-value=1.3 Score=34.92 Aligned_cols=34 Identities=32% Similarity=0.479 Sum_probs=23.0
Q ss_pred HHHHHhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeC
Q 028256 109 AEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 152 (211)
Q Consensus 109 ~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~ 152 (211)
..++..|| +||--||.||+.|+.. .++|.|++-.
T Consensus 67 ~~~m~~aD-lvIs~aG~~Ti~E~l~---------~g~P~I~ip~ 100 (167)
T PF04101_consen 67 AELMAAAD-LVISHAGAGTIAEALA---------LGKPAIVIPL 100 (167)
T ss_dssp HHHHHHHS-EEEECS-CHHHHHHHH---------CT--EEEE--
T ss_pred HHHHHHcC-EEEeCCCccHHHHHHH---------cCCCeeccCC
Confidence 34678899 7778899999988863 7899998743
No 32
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=87.84 E-value=11 Score=33.76 Aligned_cols=33 Identities=27% Similarity=0.347 Sum_probs=24.7
Q ss_pred HHHHhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeC
Q 028256 110 EMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 152 (211)
Q Consensus 110 ~m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~ 152 (211)
.++..||+ +|..||.||+.|... +++|++++-.
T Consensus 287 ~ll~~~~~-~I~hgG~~t~~Eal~---------~G~P~v~~p~ 319 (392)
T TIGR01426 287 EILKKADA-FITHGGMNSTMEALF---------NGVPMVAVPQ 319 (392)
T ss_pred HHHhhCCE-EEECCCchHHHHHHH---------hCCCEEecCC
Confidence 34577885 557899999887653 6899999843
No 33
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=87.51 E-value=19 Score=32.75 Aligned_cols=75 Identities=19% Similarity=0.148 Sum_probs=39.1
Q ss_pred HHHhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCC-------Ccc-cccceEE
Q 028256 111 MARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFI-------APA-ARYIIVS 182 (211)
Q Consensus 111 m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i-------~~~-~~~~i~~ 182 (211)
.+..||++|.-. |..|+ |++ . .++|+|+...-..+..++. ++++.-.++ +.+ ..+.+.-
T Consensus 264 ~l~aADl~V~~S-Gt~tl-Ea~---a------~G~P~Vv~yk~~pl~~~~~--~~~~~~~~~~~~nil~~~~~~pel~q~ 330 (385)
T TIGR00215 264 AMFAADAALLAS-GTAAL-EAA---L------IKTPMVVGYRMKPLTFLIA--RRLVKTDYISLPNILANRLLVPELLQE 330 (385)
T ss_pred HHHhCCEEeecC-CHHHH-HHH---H------cCCCEEEEEcCCHHHHHHH--HHHHcCCeeeccHHhcCCccchhhcCC
Confidence 568899766554 66677 664 3 6899998754323332211 222222222 111 1122333
Q ss_pred cCCHHHHHHHhhhhcc
Q 028256 183 AQTAHELICKLEVFFF 198 (211)
Q Consensus 183 ~~d~ee~~~~l~~~~~ 198 (211)
.-+++.+.+.+.++..
T Consensus 331 ~~~~~~l~~~~~~ll~ 346 (385)
T TIGR00215 331 ECTPHPLAIALLLLLE 346 (385)
T ss_pred CCCHHHHHHHHHHHhc
Confidence 3467777777776653
No 34
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=83.14 E-value=17 Score=31.63 Aligned_cols=113 Identities=21% Similarity=0.268 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHcCC--eEEecCCCCCh--hHHHHHHHHh-cC--CeEEEEecCcCC--------CCCCCCCCC----ce
Q 028256 37 LAAIQLGKQLVERNI--DLVYGGGSIGL--MGLVSQAVYD-GG--RHVLGVIPKTLM--------PREITGDTV----GE 97 (211)
Q Consensus 37 ~~A~~lG~~la~~g~--~lv~GGg~~Gl--M~a~a~gA~~-~g--G~viGv~P~~~~--------~~e~~~~~~----~~ 97 (211)
++| +.+-.+|+.|+ .||+||=+ |+ |-++.-.+.+ .| ..=+-|+|..-. .....|+.+ ++
T Consensus 60 ~Ra-~~AielA~~G~~ValVSsGDp-gVYgMA~lv~E~~~~~~~~~v~veVvPGvTA~~aaAa~lGAPL~hDF~~ISLSD 137 (249)
T COG1010 60 ERA-KEAIELAAEGRDVALVSSGDP-GVYGMAGLVLEAAEEEGWYDVDVEVVPGVTAALAAAARLGAPLGHDFCVISLSD 137 (249)
T ss_pred HHH-HHHHHHHhcCCeEEEEeCCCc-cHHHhHHHHHHHHHhcCCCCccEEEeCChHHHHHHHHHhCCCcccceEEEEhHh
Confidence 444 35566677665 55888755 98 5555555555 44 344667776431 111222211 12
Q ss_pred eeecCCHHHHHHHHHHhcCEEEEe--cCCcC---cHHHHHHHHHHHHhCCCCCcEEEEeCC
Q 028256 98 VKAVSGMHQRKAEMARQADAFIAL--PGGYG---TLEELLEVITWAQLGIHDKPVGLLNVD 153 (211)
Q Consensus 98 ~~~~~~~~~Rk~~m~~~sDa~Ivl--pGG~G---TL~El~~~~~~~~lg~~~kPiill~~~ 153 (211)
+...-..-++.......+|.+|+| |=+-+ -+.+.++++. +......||++...-
T Consensus 138 lLtPwe~IekRl~aAA~adfVi~~YNP~s~~R~~~~~~a~eil~--~~r~~~tpVgivrna 196 (249)
T COG1010 138 LLTPWEVIEKRLRAAAEADFVIALYNPISKRRPEQLGRAFEILR--EHRSPDTPVGIVRNA 196 (249)
T ss_pred cCCcHHHHHHHHHHHhhCCEEEEEECCccccchHHHHHHHHHHH--HhcCCCCcEEEEecC
Confidence 222222234555567889998888 66666 4555555543 333346899998543
No 35
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=82.47 E-value=13 Score=32.96 Aligned_cols=131 Identities=20% Similarity=0.192 Sum_probs=66.5
Q ss_pred HcCCeEEecCC--CCChhHHHHHHHHhcC-CeEEEEecCcCCCCCCCCCCCceeeec--CCHH-HHHHHHHHhcCEEEEe
Q 028256 48 ERNIDLVYGGG--SIGLMGLVSQAVYDGG-RHVLGVIPKTLMPREITGDTVGEVKAV--SGMH-QRKAEMARQADAFIAL 121 (211)
Q Consensus 48 ~~g~~lv~GGg--~~GlM~a~a~gA~~~g-G~viGv~P~~~~~~e~~~~~~~~~~~~--~~~~-~Rk~~m~~~sDa~Ivl 121 (211)
.+|..+|.||+ +.|-...++.+|..+| |.|.=..|..... .. .....++++. .+.. ..+..+.+..|+++ +
T Consensus 31 ~~G~vliigG~~~y~GA~~laa~aAl~~GaglV~v~~~~~~~~-~~-~s~~Pe~mv~~~~~~~~~~~~~~~~~~~avv-i 107 (284)
T COG0063 31 DYGRVLIIGGSRGYTGAPVLAALAALRAGAGLVSLASPPEAAS-AL-KSYLPELMVIEVEGKKLLEERELVERADAVV-I 107 (284)
T ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHhCCCeEEEecchhhhh-hH-hhcCcceeEeecccchhhHHhhhhccCCEEE-E
Confidence 36788888876 3577777788888887 4444444542110 10 1111233222 2222 22335677888655 4
Q ss_pred cCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCCCcccccceEEcCCHHHHHHHh
Q 028256 122 PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKL 193 (211)
Q Consensus 122 pGG~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee~~~~l 193 (211)
+-|.|.-+|..++....-.... +|+++ +.++.+ .+ .+...... ...++++..+.|..+.+
T Consensus 108 GpGlG~~~~~~~~~~~~l~~~~-~p~Vi-DADaL~----~l----a~~~~~~~--~~~~VlTPH~gEf~rL~ 167 (284)
T COG0063 108 GPGLGRDAEGQEALKELLSSDL-KPLVL-DADALN----LL----AELPDLLD--ERKVVLTPHPGEFARLL 167 (284)
T ss_pred CCCCCCCHHHHHHHHHHHhccC-CCEEE-eCcHHH----HH----HhCccccc--CCcEEECCCHHHHHHhc
Confidence 5578887776665542222112 88876 444332 11 11111111 11166677777766655
No 36
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=81.50 E-value=2.9 Score=37.07 Aligned_cols=46 Identities=20% Similarity=0.415 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHcCC-eEEecCCCCChhHHHHHHHHhcCCeEEEEecCc
Q 028256 38 AAIQLGKQLVERNI-DLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKT 84 (211)
Q Consensus 38 ~A~~lG~~la~~g~-~lv~GGg~~GlM~a~a~gA~~~gG~viGv~P~~ 84 (211)
.|.++++.++..++ .|+.+||. |...+++.|....+...+||+|..
T Consensus 46 ~a~~~a~~a~~~~~D~via~GGD-GTv~evingl~~~~~~~LgilP~G 92 (301)
T COG1597 46 DAIEIAREAAVEGYDTVIAAGGD-GTVNEVANGLAGTDDPPLGILPGG 92 (301)
T ss_pred cHHHHHHHHHhcCCCEEEEecCc-chHHHHHHHHhcCCCCceEEecCC
Confidence 46778888887776 45667775 999999999999988889999954
No 37
>COG3613 Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism]
Probab=80.96 E-value=14 Score=30.39 Aligned_cols=43 Identities=30% Similarity=0.210 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcCEEEEecCC------cCcHHHHHHHHHHHHhCCCCCcEEEEeCC
Q 028256 105 HQRKAEMARQADAFIALPGG------YGTLEELLEVITWAQLGIHDKPVGLLNVD 153 (211)
Q Consensus 105 ~~Rk~~m~~~sDa~IvlpGG------~GTL~El~~~~~~~~lg~~~kPiill~~~ 153 (211)
.+=...++++||++|+.-=+ .||.-|+-.+++ .+||++.+..+
T Consensus 59 ~e~d~~~i~~aD~vla~ld~fr~~~DsGTa~E~GYa~A------lgKPv~~~~~d 107 (172)
T COG3613 59 YEADIKLIDQADIVLANLDPFRPDPDSGTAFELGYAIA------LGKPVYAYRKD 107 (172)
T ss_pred HHHHHHHHhhcCEEEEecCCCCCCCCCcchHHHHHHHH------cCCceEEEeec
Confidence 34445578999998887443 799999999998 68999988654
No 38
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=79.96 E-value=46 Score=30.10 Aligned_cols=82 Identities=15% Similarity=0.078 Sum_probs=46.9
Q ss_pred eeeecCCHHHHHHHHHHhcCEEEEec---CCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCCC
Q 028256 97 EVKAVSGMHQRKAEMARQADAFIALP---GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIA 173 (211)
Q Consensus 97 ~~~~~~~~~~Rk~~m~~~sDa~Ivlp---GG~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~ 173 (211)
.+++.+++. ....+...||.+++.| .+.|.- +.|+++ .++||+.-...+-+.++. +.+.+.|+
T Consensus 303 ~v~l~~~~~-el~~~y~~aDi~~v~~S~~e~~g~~--~lEAma------~G~PVI~g~~~~~~~e~~---~~~~~~g~-- 368 (425)
T PRK05749 303 DVLLGDTMG-ELGLLYAIADIAFVGGSLVKRGGHN--PLEPAA------FGVPVISGPHTFNFKEIF---ERLLQAGA-- 368 (425)
T ss_pred cEEEEecHH-HHHHHHHhCCEEEECCCcCCCCCCC--HHHHHH------hCCCEEECCCccCHHHHH---HHHHHCCC--
Confidence 355555554 3445678999876642 123332 567777 799999743212123333 23333343
Q ss_pred cccccceEEcCCHHHHHHHhhhhcc
Q 028256 174 PAARYIIVSAQTAHELICKLEVFFF 198 (211)
Q Consensus 174 ~~~~~~i~~~~d~ee~~~~l~~~~~ 198 (211)
+...+|++++.+.|.+...
T Consensus 369 ------~~~~~d~~~La~~l~~ll~ 387 (425)
T PRK05749 369 ------AIQVEDAEDLAKAVTYLLT 387 (425)
T ss_pred ------eEEECCHHHHHHHHHHHhc
Confidence 4457888888888876543
No 39
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=76.66 E-value=51 Score=28.80 Aligned_cols=104 Identities=17% Similarity=0.126 Sum_probs=53.7
Q ss_pred CCeEEecCCCCChhHHHHHHHHhcCC-eEEEEecCcCCCCCCCCCCCceeeecCCHHHHHHHHHHhcCEEEEecCCcCcH
Q 028256 50 NIDLVYGGGSIGLMGLVSQAVYDGGR-HVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTL 128 (211)
Q Consensus 50 g~~lv~GGg~~GlM~a~a~gA~~~gG-~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~Rk~~m~~~sDa~IvlpGG~GTL 128 (211)
.+.+|++|+. | .+.+.+...+... .++---++.. .... . ..+.+.....+.-..++..||++|. .||.+|+
T Consensus 189 ~~iLv~~g~~-~-~~~l~~~l~~~~~~~~i~~~~~~~-~~~~-~---~~v~~~~~~~~~~~~~l~~ad~vI~-~~G~~t~ 260 (321)
T TIGR00661 189 DYILVYIGFE-Y-RYKILELLGKIANVKFVCYSYEVA-KNSY-N---ENVEIRRITTDNFKELIKNAELVIT-HGGFSLI 260 (321)
T ss_pred CcEEEECCcC-C-HHHHHHHHHhCCCeEEEEeCCCCC-cccc-C---CCEEEEECChHHHHHHHHhCCEEEE-CCChHHH
Confidence 5678998643 4 5666555444443 2221122211 1111 1 1222222111344556788996665 5677887
Q ss_pred HHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCC
Q 028256 129 EELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGF 171 (211)
Q Consensus 129 ~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~ 171 (211)
.|.. . +++|++++...+.++...+ .+.+.+.|.
T Consensus 261 ~Ea~---~------~g~P~l~ip~~~~~eQ~~n-a~~l~~~g~ 293 (321)
T TIGR00661 261 SEAL---S------LGKPLIVIPDLGQFEQGNN-AVKLEDLGC 293 (321)
T ss_pred HHHH---H------cCCCEEEEcCCCcccHHHH-HHHHHHCCC
Confidence 7754 3 7899999876655554333 234445454
No 40
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=76.42 E-value=18 Score=31.09 Aligned_cols=45 Identities=22% Similarity=0.302 Sum_probs=24.7
Q ss_pred HHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCc
Q 028256 106 QRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDG 154 (211)
Q Consensus 106 ~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~~g 154 (211)
++-..++..+|++++ .+|.++-+.+.++..... .+.+|++ ++.+|
T Consensus 84 ~~~~~~~~~~davvi-g~Gl~~~~~~~~l~~~~~--~~~~pvV-lDa~g 128 (272)
T TIGR00196 84 DEDEELLERYDVVVI-GPGLGQDPSFKKAVEEVL--ELDKPVV-LDADA 128 (272)
T ss_pred HHHHhhhccCCEEEE-cCCCCCCHHHHHHHHHHH--hcCCCEE-EEhHH
Confidence 333344566776655 666888665443333222 2567864 46654
No 41
>PRK00861 putative lipid kinase; Reviewed
Probab=75.28 E-value=6 Score=34.58 Aligned_cols=44 Identities=32% Similarity=0.520 Sum_probs=31.9
Q ss_pred HHHHHHHHHHcCC-eEEecCCCCChhHHHHHHHHhcCCeEEEEecCc
Q 028256 39 AIQLGKQLVERNI-DLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKT 84 (211)
Q Consensus 39 A~~lG~~la~~g~-~lv~GGg~~GlM~a~a~gA~~~gG~viGv~P~~ 84 (211)
|.++++..++.++ .||..||. |....+..+.... +..+||+|..
T Consensus 46 a~~~a~~~~~~~~d~vv~~GGD-GTl~evv~~l~~~-~~~lgviP~G 90 (300)
T PRK00861 46 ADQLAQEAIERGAELIIASGGD-GTLSAVAGALIGT-DIPLGIIPRG 90 (300)
T ss_pred HHHHHHHHHhcCCCEEEEECCh-HHHHHHHHHHhcC-CCcEEEEcCC
Confidence 3456666666664 45667776 9999999998765 4779999953
No 42
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=75.18 E-value=56 Score=28.47 Aligned_cols=69 Identities=17% Similarity=0.130 Sum_probs=40.3
Q ss_pred HHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCCCcccccceEEcCC
Q 028256 106 QRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQT 185 (211)
Q Consensus 106 ~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d 185 (211)
..-..+...||++|.=+| |..+|.+ . .++|++.++..+-+..+ .+.|. .+...+|
T Consensus 269 ~~~~~l~~~ad~~v~~Sg--gi~~Ea~---~------~g~PvI~~~~~~~~~~~-------~~~g~-------~~~~~~~ 323 (363)
T cd03786 269 LYFLLLLKNADLVLTDSG--GIQEEAS---F------LGVPVLNLRDRTERPET-------VESGT-------NVLVGTD 323 (363)
T ss_pred HHHHHHHHcCcEEEEcCc--cHHhhhh---h------cCCCEEeeCCCCccchh-------hheee-------EEecCCC
Confidence 344556778998885554 5544443 3 57999998643222221 22232 1333457
Q ss_pred HHHHHHHhhhhccC
Q 028256 186 AHELICKLEVFFFF 199 (211)
Q Consensus 186 ~ee~~~~l~~~~~~ 199 (211)
++++.+.|.+....
T Consensus 324 ~~~i~~~i~~ll~~ 337 (363)
T cd03786 324 PEAILAAIEKLLSD 337 (363)
T ss_pred HHHHHHHHHHHhcC
Confidence 89998888876653
No 43
>PRK09267 flavodoxin FldA; Validated
Probab=75.08 E-value=33 Score=27.17 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=18.1
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 028256 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLV 47 (211)
Q Consensus 18 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la 47 (211)
|++|.|+.+|..++.. +.|+.+++.|.
T Consensus 1 mmki~IiY~S~tGnT~---~vA~~Ia~~l~ 27 (169)
T PRK09267 1 MAKIGIFFGSDTGNTE---DIAKMIQKKLG 27 (169)
T ss_pred CCeEEEEEECCCChHH---HHHHHHHHHhC
Confidence 4578888888887543 44666666663
No 44
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=74.64 E-value=9.2 Score=30.61 Aligned_cols=45 Identities=16% Similarity=0.155 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHcCCeEEecCCCCChhHHHHHHHHhcCCeEEEE
Q 028256 35 YQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (211)
Q Consensus 35 ~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~a~gA~~~gG~viGv 80 (211)
+-.-|.-+.+.|+..|+.++++|.. =-.+.+++.|.+....+|||
T Consensus 25 Hd~gakvia~~l~d~GfeVi~~g~~-~tp~e~v~aA~~~dv~vIgv 69 (143)
T COG2185 25 HDRGAKVIARALADAGFEVINLGLF-QTPEEAVRAAVEEDVDVIGV 69 (143)
T ss_pred cccchHHHHHHHHhCCceEEecCCc-CCHHHHHHHHHhcCCCEEEE
Confidence 3345677899999999999999976 66788888899999999999
No 45
>PRK13337 putative lipid kinase; Reviewed
Probab=74.16 E-value=8.2 Score=33.89 Aligned_cols=45 Identities=29% Similarity=0.466 Sum_probs=30.8
Q ss_pred HHHHHHHHHHcCC-eEEecCCCCChhHHHHHHHHhcC-CeEEEEecCc
Q 028256 39 AIQLGKQLVERNI-DLVYGGGSIGLMGLVSQAVYDGG-RHVLGVIPKT 84 (211)
Q Consensus 39 A~~lG~~la~~g~-~lv~GGg~~GlM~a~a~gA~~~g-G~viGv~P~~ 84 (211)
|.++.+.++++++ .||..||. |...++..+....+ ...+||+|..
T Consensus 46 a~~~a~~~~~~~~d~vvv~GGD-GTl~~vv~gl~~~~~~~~lgiiP~G 92 (304)
T PRK13337 46 ATLAAERAVERKFDLVIAAGGD-GTLNEVVNGIAEKENRPKLGIIPVG 92 (304)
T ss_pred HHHHHHHHHhcCCCEEEEEcCC-CHHHHHHHHHhhCCCCCcEEEECCc
Confidence 3455555666664 45555666 99999999887654 3579999943
No 46
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=74.11 E-value=45 Score=27.26 Aligned_cols=123 Identities=17% Similarity=0.225 Sum_probs=66.1
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCe---EEecCCCCChhHHHHHHHHhcCCeEEEEecCcCCCCCCCCCC
Q 028256 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNID---LVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDT 94 (211)
Q Consensus 18 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~---lv~GGg~~GlM~a~a~gA~~~gG~viGv~P~~~~~~e~~~~~ 94 (211)
++.+-|-+|+..-.+=.-.-.+.+.-+.|-++|++ |=.|=|..+.-+-. +.+...+|.+|-.. .+
T Consensus 3 ~~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~~~d~~-~~~~k~~gl~id~y--~f--------- 70 (170)
T KOG3349|consen 3 LMTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPFFGDPI-DLIRKNGGLTIDGY--DF--------- 70 (170)
T ss_pred ceEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccCCCCHH-HhhcccCCeEEEEE--ec---------
Confidence 56777777776532222234456777788888874 34565532333333 33334444433220 11
Q ss_pred CceeeecCCHHHHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEE-eCCccchhHHHHHHHHHHcCCC
Q 028256 95 VGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLL-NVDGYYNSLLSFIDKAVDEGFI 172 (211)
Q Consensus 95 ~~~~~~~~~~~~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill-~~~g~~~~l~~~l~~~~~~g~i 172 (211)
.+.+. . -++.|| +|+=.+|.||--|. +. .+||.+++ |-+=+=++=.+..+.+.++|++
T Consensus 71 ------~psl~---e-~I~~Ad-lVIsHAGaGS~let---L~------l~KPlivVvNd~LMDNHQ~ELA~qL~~egyL 129 (170)
T KOG3349|consen 71 ------SPSLT---E-DIRSAD-LVISHAGAGSCLET---LR------LGKPLIVVVNDSLMDNHQLELAKQLAEEGYL 129 (170)
T ss_pred ------CccHH---H-HHhhcc-EEEecCCcchHHHH---HH------cCCCEEEEeChHhhhhHHHHHHHHHHhcCcE
Confidence 01111 1 234466 56678999996555 44 57998876 4322223444445778888875
No 47
>PRK08105 flavodoxin; Provisional
Probab=73.61 E-value=4.6 Score=31.96 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=27.1
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEE
Q 028256 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV 54 (211)
Q Consensus 18 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv 54 (211)
|++|.|+.||..++.+ +.|++|++.|.+.|+.+.
T Consensus 1 m~~i~I~YgS~tGnte---~~A~~l~~~l~~~g~~~~ 34 (149)
T PRK08105 1 MAKVGIFVGTVYGNAL---LVAEEAEAILTAQGHEVT 34 (149)
T ss_pred CCeEEEEEEcCchHHH---HHHHHHHHHHHhCCCceE
Confidence 4678999899988644 568899999998888754
No 48
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=73.34 E-value=63 Score=28.26 Aligned_cols=78 Identities=21% Similarity=0.187 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCcc--chhHHHHHHHHHHcCCCCcccccce
Q 028256 103 GMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGY--YNSLLSFIDKAVDEGFIAPAARYII 180 (211)
Q Consensus 103 ~~~~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~~g~--~~~l~~~l~~~~~~g~i~~~~~~~i 180 (211)
++...-..++..||++|. ++|.+|+-|. ++ .++|++.....+- .+... ..+.+.+.|. ..+
T Consensus 241 g~~~~~~~~~~~~d~~i~-~~g~~~~~Ea---~~------~g~Pvv~~~~~~~~~~~~~~-~~~~i~~~~~------g~~ 303 (357)
T PRK00726 241 PFIDDMAAAYAAADLVIC-RAGASTVAEL---AA------AGLPAILVPLPHAADDHQTA-NARALVDAGA------ALL 303 (357)
T ss_pred ehHhhHHHHHHhCCEEEE-CCCHHHHHHH---HH------hCCCEEEecCCCCCcCcHHH-HHHHHHHCCC------EEE
Confidence 333334457789999885 5556665554 44 6899998854321 11111 1123333332 123
Q ss_pred EEcCC--HHHHHHHhhhhc
Q 028256 181 VSAQT--AHELICKLEVFF 197 (211)
Q Consensus 181 ~~~~d--~ee~~~~l~~~~ 197 (211)
.-.+| ++++.+.|++..
T Consensus 304 ~~~~~~~~~~l~~~i~~ll 322 (357)
T PRK00726 304 IPQSDLTPEKLAEKLLELL 322 (357)
T ss_pred EEcccCCHHHHHHHHHHHH
Confidence 33344 888888888654
No 49
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=73.19 E-value=27 Score=32.22 Aligned_cols=91 Identities=24% Similarity=0.245 Sum_probs=53.8
Q ss_pred HHHcCCeEEecCCCCC----hhHHHHHHHHhcCCeEEEEecCcCCCCCCCCCCCceeeecCCHHHHHHHHHHhcCEEEEe
Q 028256 46 LVERNIDLVYGGGSIG----LMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIAL 121 (211)
Q Consensus 46 la~~g~~lv~GGg~~G----lM~a~a~gA~~~gG~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~Rk~~m~~~sDa~Ivl 121 (211)
.+.+....++=|+. + +-+.+.+.+.+.+.++|--.... .. .. .+-....++..... ...++..||+| |-
T Consensus 234 ~~d~~~vyvslGt~-~~~~~l~~~~~~a~~~l~~~vi~~~~~~-~~-~~-~~~p~n~~v~~~~p--~~~~l~~ad~v-I~ 306 (406)
T COG1819 234 PADRPIVYVSLGTV-GNAVELLAIVLEALADLDVRVIVSLGGA-RD-TL-VNVPDNVIVADYVP--QLELLPRADAV-IH 306 (406)
T ss_pred cCCCCeEEEEcCCc-ccHHHHHHHHHHHHhcCCcEEEEecccc-cc-cc-ccCCCceEEecCCC--HHHHhhhcCEE-Ee
Confidence 34455555555543 6 45667777778888877665441 11 00 11111233333332 22378889955 57
Q ss_pred cCCcCcHHHHHHHHHHHHhCCCCCcEEEEeC
Q 028256 122 PGGYGTLEELLEVITWAQLGIHDKPVGLLNV 152 (211)
Q Consensus 122 pGG~GTL~El~~~~~~~~lg~~~kPiill~~ 152 (211)
.||.||..|... .++|++++-.
T Consensus 307 hGG~gtt~eaL~---------~gvP~vv~P~ 328 (406)
T COG1819 307 HGGAGTTSEALY---------AGVPLVVIPD 328 (406)
T ss_pred cCCcchHHHHHH---------cCCCEEEecC
Confidence 999999888753 6899999854
No 50
>PRK09004 FMN-binding protein MioC; Provisional
Probab=72.63 E-value=4.5 Score=31.92 Aligned_cols=34 Identities=21% Similarity=0.309 Sum_probs=26.7
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEE
Q 028256 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV 54 (211)
Q Consensus 18 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv 54 (211)
|++|.|+.||..++.. +.|++|++.+.+.|+.+.
T Consensus 1 M~~i~I~ygS~tGnae---~~A~~l~~~~~~~g~~~~ 34 (146)
T PRK09004 1 MADITLISGSTLGGAE---YVADHLAEKLEEAGFSTE 34 (146)
T ss_pred CCeEEEEEEcCchHHH---HHHHHHHHHHHHcCCceE
Confidence 5678999999988654 568889999988887654
No 51
>PRK13055 putative lipid kinase; Reviewed
Probab=72.46 E-value=8.6 Score=34.38 Aligned_cols=44 Identities=23% Similarity=0.336 Sum_probs=30.3
Q ss_pred HHHHHHHHHHcCC-eEEecCCCCChhHHHHHHHHhcC-CeEEEEecC
Q 028256 39 AIQLGKQLVERNI-DLVYGGGSIGLMGLVSQAVYDGG-RHVLGVIPK 83 (211)
Q Consensus 39 A~~lG~~la~~g~-~lv~GGg~~GlM~a~a~gA~~~g-G~viGv~P~ 83 (211)
|.++.+.+++.++ .||..||. |.+..++.+....+ ...+||+|.
T Consensus 48 a~~~~~~~~~~~~d~vvv~GGD-GTl~evvngl~~~~~~~~LgiiP~ 93 (334)
T PRK13055 48 AKNEAKRAAEAGFDLIIAAGGD-GTINEVVNGIAPLEKRPKMAIIPA 93 (334)
T ss_pred HHHHHHHHhhcCCCEEEEECCC-CHHHHHHHHHhhcCCCCcEEEECC
Confidence 3455555556654 44555666 99999999988654 456999994
No 52
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=72.34 E-value=8.9 Score=33.46 Aligned_cols=44 Identities=23% Similarity=0.384 Sum_probs=30.0
Q ss_pred HHHHHHHHHHcCC-eEEecCCCCChhHHHHHHHHhcC-C--eEEEEecC
Q 028256 39 AIQLGKQLVERNI-DLVYGGGSIGLMGLVSQAVYDGG-R--HVLGVIPK 83 (211)
Q Consensus 39 A~~lG~~la~~g~-~lv~GGg~~GlM~a~a~gA~~~g-G--~viGv~P~ 83 (211)
|.++++.+++.++ .||.-||. |....+..|....+ + ..+||+|.
T Consensus 41 a~~~a~~~~~~~~d~vv~~GGD-GTi~ev~ngl~~~~~~~~~~lgiiP~ 88 (293)
T TIGR03702 41 AQRYVAEALALGVSTVIAGGGD-GTLREVATALAQIRDDAAPALGLLPL 88 (293)
T ss_pred HHHHHHHHHHcCCCEEEEEcCC-hHHHHHHHHHHhhCCCCCCcEEEEcC
Confidence 3456666666654 44555556 99999999998653 2 35999994
No 53
>PRK13054 lipid kinase; Reviewed
Probab=71.77 E-value=9.6 Score=33.38 Aligned_cols=43 Identities=21% Similarity=0.416 Sum_probs=28.3
Q ss_pred HHHHHHHHHcCC-eEEecCCCCChhHHHHHHHHhcC-C--eEEEEecC
Q 028256 40 IQLGKQLVERNI-DLVYGGGSIGLMGLVSQAVYDGG-R--HVLGVIPK 83 (211)
Q Consensus 40 ~~lG~~la~~g~-~lv~GGg~~GlM~a~a~gA~~~g-G--~viGv~P~ 83 (211)
.++.+.+++.++ .||..||. |....++.+..... + ..+||+|.
T Consensus 46 ~~~a~~~~~~~~d~vvv~GGD-GTl~evv~~l~~~~~~~~~~lgiiP~ 92 (300)
T PRK13054 46 ARYVEEALALGVATVIAGGGD-GTINEVATALAQLEGDARPALGILPL 92 (300)
T ss_pred HHHHHHHHHcCCCEEEEECCc-cHHHHHHHHHHhhccCCCCcEEEEeC
Confidence 445555555554 45566666 98888888877542 2 47999994
No 54
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=71.47 E-value=22 Score=30.60 Aligned_cols=125 Identities=23% Similarity=0.258 Sum_probs=59.2
Q ss_pred EEecCCCCChhHHH---HHHHHhcC-CeEEEEecCcCCCCCCCCCCCceeee-cCCH--HHHHHHHHHhcCEEEEecCCc
Q 028256 53 LVYGGGSIGLMGLV---SQAVYDGG-RHVLGVIPKTLMPREITGDTVGEVKA-VSGM--HQRKAEMARQADAFIALPGGY 125 (211)
Q Consensus 53 lv~GGg~~GlM~a~---a~gA~~~g-G~viGv~P~~~~~~e~~~~~~~~~~~-~~~~--~~Rk~~m~~~sDa~IvlpGG~ 125 (211)
+|.||+. +..+|+ +++|++.| |.|.-+.|....+. ......|+++ .-.. ...-....+..|++++=|| .
T Consensus 2 lvigGS~-~~~GA~~Laa~aAlr~GaGlV~~~~~~~~~~~--~~~~~Pe~m~~~~~~~~~~~~~~~~~~~~av~iGPG-l 77 (242)
T PF01256_consen 2 LVIGGSE-GYPGAAILAARAALRSGAGLVTLATPESIAPV--IASYSPEAMVSPLPSDEDVEILELLEKADAVVIGPG-L 77 (242)
T ss_dssp EEEE-BT-SSHHHHHHHHHHHHHTT-SEEEEEECGCCHHH--HHHHTTTSEEEETTHCCHHHHHHHHCH-SEEEE-TT--
T ss_pred EEEECCC-CCCCHHHHHHHHHHHHCCCcEEEEEcHHHHHH--HHhCCceeEEecccchhhhhhHhhhccCCEEEeecC-C
Confidence 4667754 777665 66777777 67766666543210 0001112221 1111 1122334577898877776 4
Q ss_pred CcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCCCcccccceEEcCCHHHHHHHhhh
Q 028256 126 GTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKLEV 195 (211)
Q Consensus 126 GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee~~~~l~~ 195 (211)
|+-++..+.+... -...+| ++++-++.| . + .... ......++++..+.|+-+.+..
T Consensus 78 g~~~~~~~~~~~~--~~~~~p-~VlDADaL~----~-l---~~~~---~~~~~~~IlTPH~gE~~rL~~~ 133 (242)
T PF01256_consen 78 GRDEETEELLEEL--LESDKP-LVLDADALN----L-L---AENP---KKRNAPVILTPHPGEFARLLGK 133 (242)
T ss_dssp SSSHHHHHHHHHH--HHHCST-EEEECHHHH----C-H---HHCC---CCSSSCEEEE-BHHHHHHHHTT
T ss_pred CCchhhHHHHHHH--Hhhcce-EEEehHHHH----H-H---Hhcc---ccCCCCEEECCCHHHHHHHhCC
Confidence 5555543333211 114678 455764332 1 1 1111 3344567778888887776654
No 55
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=71.15 E-value=6.2 Score=30.01 Aligned_cols=44 Identities=27% Similarity=0.415 Sum_probs=29.4
Q ss_pred HHHHHHHHHcCC--eEEecCCCCChhHHHHHHHHhcCC---eEEEEecCc
Q 028256 40 IQLGKQLVERNI--DLVYGGGSIGLMGLVSQAVYDGGR---HVLGVIPKT 84 (211)
Q Consensus 40 ~~lG~~la~~g~--~lv~GGg~~GlM~a~a~gA~~~gG---~viGv~P~~ 84 (211)
.++.+....... .||..||. |..-.+..+....+. ..+|++|..
T Consensus 43 ~~~~~~~~~~~~~~~ivv~GGD-GTl~~vv~~l~~~~~~~~~~l~iiP~G 91 (130)
T PF00781_consen 43 EALARILALDDYPDVIVVVGGD-GTLNEVVNGLMGSDREDKPPLGIIPAG 91 (130)
T ss_dssp HHHHHHHHHTTS-SEEEEEESH-HHHHHHHHHHCTSTSSS--EEEEEE-S
T ss_pred HHHHHHHhhccCccEEEEEcCc-cHHHHHHHHHhhcCCCccceEEEecCC
Confidence 445554444444 66666676 988888888888765 479999954
No 56
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=70.99 E-value=83 Score=28.62 Aligned_cols=42 Identities=17% Similarity=0.346 Sum_probs=29.3
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeE-EecCCCCChhHHHHHH
Q 028256 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDL-VYGGGSIGLMGLVSQA 69 (211)
Q Consensus 18 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~l-v~GGg~~GlM~a~a~g 69 (211)
+++|+|+|+.+.+ -.|+..|+++|+.+ +||= ...++...+..
T Consensus 1 ~~kI~ViGaGswG---------TALA~~la~ng~~V~lw~r-~~~~~~~i~~~ 43 (329)
T COG0240 1 MMKIAVIGAGSWG---------TALAKVLARNGHEVRLWGR-DEEIVAEINET 43 (329)
T ss_pred CceEEEEcCChHH---------HHHHHHHHhcCCeeEEEec-CHHHHHHHHhc
Confidence 4689999876654 36899999999887 4554 33555555444
No 57
>PF01182 Glucosamine_iso: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; InterPro: IPR006148 This domain is characteristic of the enzymes 6-phosphogluconolactonase (3.1.1.31 from EC), Glucosamine-6-phosphate isomerase (3.5.99.6 from EC), and Galactosamine-6-phosphate isomerase. 6-Phosphogluconolactonase is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. Glucosamine-6-phosphate isomerase (or Glucosamine 6-phosphate deaminase) is the enzyme responsible for the conversion of D-glucosamine 6-phosphate into D-fructose 6-phosphate []. It is the last specific step in the pathway for N-acetylglucosamine (GlcNAC) utilization in bacteria such as Escherichia coli (gene nagB) or in fungi such as Candida albicans (gene NAG1).; GO: 0005975 carbohydrate metabolic process; PDB: 3CSS_A 3CH7_A 1Y89_B 3TX2_A 2BKX_B 2BKV_B 3E15_B 1HOR_B 1JT9_A 1HOT_A ....
Probab=69.28 E-value=23 Score=29.23 Aligned_cols=86 Identities=26% Similarity=0.229 Sum_probs=47.8
Q ss_pred HHHhcCEEEEecCCcCcHHHHHHHHHHHH-hCCCCCcEEEEeCCccc------hhHHHHHH-HHHHcCCCCcccccceE-
Q 028256 111 MARQADAFIALPGGYGTLEELLEVITWAQ-LGIHDKPVGLLNVDGYY------NSLLSFID-KAVDEGFIAPAARYIIV- 181 (211)
Q Consensus 111 m~~~sDa~IvlpGG~GTL~El~~~~~~~~-lg~~~kPiill~~~g~~------~~l~~~l~-~~~~~g~i~~~~~~~i~- 181 (211)
+.+..++.|+|+||. |...+++.+.-.. .+..-+.|.+++.+.+| +....+++ .+.+..-|+++....+.
T Consensus 17 i~~~~~~~i~LsgGs-tp~~~y~~L~~~~~~~i~w~~v~~~~~DEr~v~~~~~~Sn~~~~~~~l~~~~~i~~~~i~~~~~ 95 (199)
T PF01182_consen 17 IAERGRAVIALSGGS-TPKPLYQELAKLHKERIDWSRVHFFNVDERVVPPDDPDSNYRMLREHLLDPLPIPPENIHPIDG 95 (199)
T ss_dssp HHHCSSEEEEE--SC-THHHHHHHHHHHHHTCSCGGGEEEEESEEESSTTTSTTSHHHHHHHHTGGGSGGGGGGEETSST
T ss_pred HHHCCCEEEEEcCCH-HHHHHHHHHhhhccccCChhHeEEEeCcccccCCCCCccHHHHHHHHhhccCCCCcceEEeCCC
Confidence 346688999999995 5556777665433 12233678888888887 12334443 34433333333222222
Q ss_pred EcCCHHHHHHHhhhhc
Q 028256 182 SAQTAHELICKLEVFF 197 (211)
Q Consensus 182 ~~~d~ee~~~~l~~~~ 197 (211)
-..|+++..+.+++..
T Consensus 96 ~~~~~~~~~~~y~~~l 111 (199)
T PF01182_consen 96 EADDPEEAAERYEQEL 111 (199)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 2467888777776544
No 58
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=67.98 E-value=69 Score=27.07 Aligned_cols=15 Identities=27% Similarity=0.536 Sum_probs=12.6
Q ss_pred HHHHhcCEEEEecCC
Q 028256 110 EMARQADAFIALPGG 124 (211)
Q Consensus 110 ~m~~~sDa~IvlpGG 124 (211)
-+.+.||.+|.+|+.
T Consensus 126 sLak~aDvvl~ip~~ 140 (202)
T COG0794 126 SLAKAADVVLVIPVK 140 (202)
T ss_pred hHHHhcCeEEEccCc
Confidence 367889999999986
No 59
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=67.75 E-value=3.4 Score=42.17 Aligned_cols=47 Identities=30% Similarity=0.484 Sum_probs=36.2
Q ss_pred HHHHHHHHHcCCeEEecCCCCChhHHHHHHHHhc-----------CCeEEEEecCcCCCC
Q 028256 40 IQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDG-----------GRHVLGVIPKTLMPR 88 (211)
Q Consensus 40 ~~lG~~la~~g~~lv~GGg~~GlM~a~a~gA~~~-----------gG~viGv~P~~~~~~ 88 (211)
.+|+|.|.-+-+.||.||| |.=++++-|++.| ||.+||-.-..++..
T Consensus 829 sRLAR~LtGnaIgLVLGGG--GARG~ahiGvl~ALeE~GIPvD~VGGTSIGafiGaLYA~ 886 (1158)
T KOG2968|consen 829 SRLARILTGNAIGLVLGGG--GARGAAHIGVLQALEEAGIPVDMVGGTSIGAFIGALYAE 886 (1158)
T ss_pred HHHHHHHhCCeEEEEecCc--chhhhhHHHHHHHHHHcCCCeeeeccccHHHhhhhhhhc
Confidence 3689999999999999996 8999999888763 777787544444433
No 60
>PRK11914 diacylglycerol kinase; Reviewed
Probab=66.58 E-value=12 Score=32.71 Aligned_cols=44 Identities=27% Similarity=0.371 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHcCC-eEEecCCCCChhHHHHHHHHhcCCeEEEEecC
Q 028256 38 AAIQLGKQLVERNI-DLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPK 83 (211)
Q Consensus 38 ~A~~lG~~la~~g~-~lv~GGg~~GlM~a~a~gA~~~gG~viGv~P~ 83 (211)
.|.++++.+++.++ .||..||. |...+++.+.... +..+||+|.
T Consensus 52 ~~~~~a~~~~~~~~d~vvv~GGD-GTi~evv~~l~~~-~~~lgiiP~ 96 (306)
T PRK11914 52 DARHLVAAALAKGTDALVVVGGD-GVISNALQVLAGT-DIPLGIIPA 96 (306)
T ss_pred HHHHHHHHHHhcCCCEEEEECCc-hHHHHHhHHhccC-CCcEEEEeC
Confidence 35667777777765 35556666 9999998887654 467999994
No 61
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=66.51 E-value=32 Score=29.33 Aligned_cols=73 Identities=18% Similarity=0.228 Sum_probs=44.7
Q ss_pred HHHHHHHHHhcCEEEEec----CCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCCCcccccce
Q 028256 105 HQRKAEMARQADAFIALP----GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYII 180 (211)
Q Consensus 105 ~~Rk~~m~~~sDa~Ivlp----GG~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i 180 (211)
.+....+...||++|... .|+|. =+.|+++ .++||+..+..+..+.+.. ......+
T Consensus 254 ~~~~~~~~~~ad~~i~ps~~~~e~~g~--~~~Ea~~------~g~Pvi~~~~~~~~~~i~~------------~~~~g~~ 313 (357)
T cd03795 254 DEEKAALLAACDVFVFPSVERSEAFGI--VLLEAMA------FGKPVISTEIGTGGSYVNL------------HGVTGLV 313 (357)
T ss_pred HHHHHHHHHhCCEEEeCCcccccccch--HHHHHHH------cCCCEEecCCCCchhHHhh------------CCCceEE
Confidence 344566778899987642 45554 2566676 7899998776544333221 0112234
Q ss_pred EEcCCHHHHHHHhhhhc
Q 028256 181 VSAQTAHELICKLEVFF 197 (211)
Q Consensus 181 ~~~~d~ee~~~~l~~~~ 197 (211)
.-.+|++++.+.|.+..
T Consensus 314 ~~~~d~~~~~~~i~~l~ 330 (357)
T cd03795 314 VPPGDPAALAEAIRRLL 330 (357)
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 44578888888887654
No 62
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=66.17 E-value=35 Score=28.20 Aligned_cols=72 Identities=17% Similarity=0.227 Sum_probs=41.2
Q ss_pred HHHHHHHHhcCEEEEecC--CcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCCCcccccceEEc
Q 028256 106 QRKAEMARQADAFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSA 183 (211)
Q Consensus 106 ~Rk~~m~~~sDa~IvlpG--G~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~ 183 (211)
+....++..||++|.-.. |+|+ =+.|+++ .++|++..+..+....+.. . .....+.-.
T Consensus 244 ~~~~~~~~~ad~~i~ps~~e~~~~--~~~Ea~a------~G~Pvi~~~~~~~~~~~~~-------~-----~~~g~~~~~ 303 (348)
T cd03820 244 KNIEEYYAKASIFVLTSRFEGFPM--VLLEAMA------FGLPVISFDCPTGPSEIIE-------D-----GVNGLLVPN 303 (348)
T ss_pred chHHHHHHhCCEEEeCccccccCH--HHHHHHH------cCCCEEEecCCCchHhhhc-------c-----CcceEEeCC
Confidence 334456778998765432 3343 3667776 7999998765433333221 1 111223334
Q ss_pred CCHHHHHHHhhhhc
Q 028256 184 QTAHELICKLEVFF 197 (211)
Q Consensus 184 ~d~ee~~~~l~~~~ 197 (211)
+|++++.+.|.+..
T Consensus 304 ~~~~~~~~~i~~ll 317 (348)
T cd03820 304 GDVEALAEALLRLM 317 (348)
T ss_pred CCHHHHHHHHHHHH
Confidence 57788888887764
No 63
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=66.16 E-value=16 Score=26.82 Aligned_cols=38 Identities=26% Similarity=0.183 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCEEEEecC---CcCcHHHHHHHHHHHHhCCCCCcEE
Q 028256 105 HQRKAEMARQADAFIALPG---GYGTLEELLEVITWAQLGIHDKPVG 148 (211)
Q Consensus 105 ~~Rk~~m~~~sDa~IvlpG---G~GTL~El~~~~~~~~lg~~~kPii 148 (211)
..+...++..||+++.||| +-|..-|...+-. .++||+
T Consensus 50 m~~~l~~L~~cD~i~~l~gWe~S~GA~~E~~~A~~------lGl~V~ 90 (92)
T PF14359_consen 50 MRICLAMLSDCDAIYMLPGWENSRGARLEHELAKK------LGLPVI 90 (92)
T ss_pred HHHHHHHHHhCCEEEEcCCcccCcchHHHHHHHHH------CCCeEe
Confidence 3455667779999999998 4699999987766 566664
No 64
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=66.16 E-value=8.9 Score=32.16 Aligned_cols=41 Identities=20% Similarity=0.115 Sum_probs=32.0
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEE-ecC
Q 028256 17 RFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV-YGG 57 (211)
Q Consensus 17 ~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv-~GG 57 (211)
++++|+|||||=.+...-+...|+++.+.+...-...+ ++.
T Consensus 1 ~~~~i~lfGGsFdP~H~GHl~ia~~~~~~l~ld~vi~~ps~~ 42 (197)
T COG1057 1 KMKKIALFGGSFDPPHYGHLLIAEEALDQLGLDKVIFLPSPV 42 (197)
T ss_pred CCceEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEecCCC
Confidence 47899999999998888888899998888876653333 444
No 65
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=65.48 E-value=39 Score=28.46 Aligned_cols=41 Identities=34% Similarity=0.473 Sum_probs=22.5
Q ss_pred HHHhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCcc
Q 028256 111 MARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGY 155 (211)
Q Consensus 111 m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~~g~ 155 (211)
.....|++++ .+|.|+-+.+..+..... .++.|++ ++.++.
T Consensus 74 ~~~~~d~v~i-g~gl~~~~~~~~i~~~~~--~~~~pvV-lDa~~~ 114 (254)
T cd01171 74 LLERADAVVI-GPGLGRDEEAAEILEKAL--AKDKPLV-LDADAL 114 (254)
T ss_pred hhccCCEEEE-ecCCCCCHHHHHHHHHHH--hcCCCEE-EEcHHH
Confidence 4466787665 556887544443333222 2467865 576643
No 66
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=65.32 E-value=13 Score=29.69 Aligned_cols=37 Identities=19% Similarity=0.219 Sum_probs=27.4
Q ss_pred hcCcceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEec
Q 028256 15 KSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYG 56 (211)
Q Consensus 15 ~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~G 56 (211)
.++-++|+|+|-|..+..+. ..+.+.|-++||.|+==
T Consensus 13 L~~~K~IAvVG~S~~P~r~s-----y~V~kyL~~~GY~ViPV 49 (140)
T COG1832 13 LKSAKTIAVVGASDKPDRPS-----YRVAKYLQQKGYRVIPV 49 (140)
T ss_pred HHhCceEEEEecCCCCCccH-----HHHHHHHHHCCCEEEee
Confidence 34567999998777654444 46888999999999633
No 67
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=65.24 E-value=18 Score=32.38 Aligned_cols=50 Identities=24% Similarity=0.290 Sum_probs=35.0
Q ss_pred HhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeC-----CccchhHHHHHHH
Q 028256 113 RQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV-----DGYYNSLLSFIDK 165 (211)
Q Consensus 113 ~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~-----~g~~~~l~~~l~~ 165 (211)
+..|+|||..| .-||+|....+++.-- .+||||+.+. .-..|...++.+.
T Consensus 77 ~~~dGiVVtHG-TDTmeeTA~~L~~~l~--~~kPVVlTGA~rp~~~~~sDg~~NL~~A 131 (323)
T cd00411 77 DSYDGFVITHG-TDTMEETAYFLSLTLE--NDKPVVLTGSMRPSTELSADGPLNLYNA 131 (323)
T ss_pred HhcCcEEEEcC-cccHHHHHHHHHHHhc--CCCCEEEECCCCCCCCcCcchHHHHHHH
Confidence 34799999876 7999999988876332 3899999854 1234555555544
No 68
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=64.63 E-value=10 Score=29.81 Aligned_cols=33 Identities=15% Similarity=0.331 Sum_probs=26.5
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeE
Q 028256 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDL 53 (211)
Q Consensus 18 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~l 53 (211)
|++|+||-+|..++.. ..|+.+...|...|+.+
T Consensus 1 M~ki~Ivy~S~tGnTe---~vA~~i~~~l~~~~~~~ 33 (151)
T COG0716 1 MMKILIVYGSRTGNTE---KVAEIIAEELGADGFEV 33 (151)
T ss_pred CCeEEEEEEcCCCcHH---HHHHHHHHHhccCCceE
Confidence 6789999899998644 46888888888888776
No 69
>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]
Probab=64.51 E-value=48 Score=27.67 Aligned_cols=70 Identities=19% Similarity=0.355 Sum_probs=43.8
Q ss_pred cCCeEEecCCCCChhHHHHHHHHhcCCeEEEEecCcCCCCCCCCCCCceeee--cCCHHHHHHHHHH---------hcCE
Q 028256 49 RNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKA--VSGMHQRKAEMAR---------QADA 117 (211)
Q Consensus 49 ~g~~lv~GGg~~GlM~a~a~gA~~~gG~viGv~P~~~~~~e~~~~~~~~~~~--~~~~~~Rk~~m~~---------~sDa 117 (211)
.|-.||||| . |..+.++..+.++++..++-+ .+...|.+.. .+++ .+++-+..+..++ .-|+
T Consensus 3 agrVivYGG-k-GALGSacv~~FkannywV~si--Dl~eNe~Ad~---sI~V~~~~swtEQe~~v~~~vg~sL~gekvDa 75 (236)
T KOG4022|consen 3 AGRVIVYGG-K-GALGSACVEFFKANNYWVLSI--DLSENEQADS---SILVDGNKSWTEQEQSVLEQVGSSLQGEKVDA 75 (236)
T ss_pred CceEEEEcC-c-chHhHHHHHHHHhcCeEEEEE--eecccccccc---eEEecCCcchhHHHHHHHHHHHHhhcccccce
Confidence 467899998 5 999999999999988776653 1222222211 1222 3445454444443 3699
Q ss_pred EEEecCCc
Q 028256 118 FIALPGGY 125 (211)
Q Consensus 118 ~IvlpGG~ 125 (211)
++.+.||.
T Consensus 76 v~CVAGGW 83 (236)
T KOG4022|consen 76 VFCVAGGW 83 (236)
T ss_pred EEEeeccc
Confidence 99888875
No 70
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=63.96 E-value=18 Score=33.57 Aligned_cols=83 Identities=24% Similarity=0.398 Sum_probs=50.8
Q ss_pred CeEEecCCCCChhHHHHHHHHh--------------------cCCeEEEEecCcCCCCCCCCCCCceeeecCCHHHHHHH
Q 028256 51 IDLVYGGGSIGLMGLVSQAVYD--------------------GGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAE 110 (211)
Q Consensus 51 ~~lv~GGg~~GlM~a~a~gA~~--------------------~gG~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~Rk~~ 110 (211)
+.|.+|-|| |+.+--.+-+.+ .+|+|.||--+.+.|.....-..+.-.+..+|
T Consensus 141 FHiTWGTGP-gvl~pFvr~~re~~~~~~v~f~~RHrV~~l~~t~grvtGv~GdVLeps~v~RG~~SSR~~~GdF------ 213 (552)
T COG3573 141 FHITWGTGP-GVLEPFVRRLREAQRRGRVTFRFRHRVDGLTTTGGRVTGVRGDVLEPSDVERGQPSSREVVGDF------ 213 (552)
T ss_pred eEEeecCCc-chhhHHHHHHHHHHhCCceEEEeeeeccceEeeCCeEeeecccccCCCccccCCCccceeecce------
Confidence 478899998 999888777666 36777887555554432211111111122222
Q ss_pred HHHhcCEEEEecCCcCcHHHHHH-HHHHHHhC
Q 028256 111 MARQADAFIALPGGYGTLEELLE-VITWAQLG 141 (211)
Q Consensus 111 m~~~sDa~IvlpGG~GTL~El~~-~~~~~~lg 141 (211)
.-++.++||-.||+|-=.|+.- .|--..+|
T Consensus 214 -ef~A~aviv~SGGIGGnhelVRrnWP~eRlG 244 (552)
T COG3573 214 -EFSASAVIVASGGIGGNHELVRRNWPTERLG 244 (552)
T ss_pred -EEeeeeEEEecCCcCCCHHHHHhcCchhhcC
Confidence 3457899999999998888764 33334444
No 71
>PRK05723 flavodoxin; Provisional
Probab=63.63 E-value=8.7 Score=30.58 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=26.4
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEE
Q 028256 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV 54 (211)
Q Consensus 19 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv 54 (211)
++|+|+.||..++.+ ..|+++.+.|.+.|+.+.
T Consensus 1 ~~i~I~ygS~tG~ae---~~A~~la~~l~~~g~~~~ 33 (151)
T PRK05723 1 MKVAILSGSVYGTAE---EVARHAESLLKAAGFEAW 33 (151)
T ss_pred CeEEEEEEcCchHHH---HHHHHHHHHHHHCCCcee
Confidence 478899899998655 458899999988888864
No 72
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=63.56 E-value=12 Score=33.29 Aligned_cols=107 Identities=26% Similarity=0.329 Sum_probs=62.4
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEecCCCCChhHHHHHHHHhcCCeEEEEecCcCCCCCCCCCCCc
Q 028256 17 RFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVG 96 (211)
Q Consensus 17 ~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~a~gA~~~gG~viGv~P~~~~~~e~~~~~~~ 96 (211)
++++|.++. +.+ .+...+.+.++.++|.++|+.+..---. . ... + ...
T Consensus 2 ~~kkv~lI~--n~~-~~~~~~~~~~i~~~L~~~g~~v~v~~~~-~---------~~~-----~------------~~~-- 49 (305)
T PRK02645 2 QLKQVIIAY--KAG-SSQAKEAAERCAKQLEARGCKVLMGPSG-P---------KDN-----P------------YPV-- 49 (305)
T ss_pred CcCEEEEEE--eCC-CHHHHHHHHHHHHHHHHCCCEEEEecCc-h---------hhc-----c------------ccc--
Confidence 467788884 333 3445567888888898888886543211 0 000 0 000
Q ss_pred eeeecCCHHHHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeC-C--ccchhH------HHHHHHHH
Q 028256 97 EVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV-D--GYYNSL------LSFIDKAV 167 (211)
Q Consensus 97 ~~~~~~~~~~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~-~--g~~~~l------~~~l~~~~ 167 (211)
. .......+|.+|++ ||=||+.+++..+. ..++|++-+|. + ||..+. .+.++.+.
T Consensus 50 -------~---~~~~~~~~d~vi~~-GGDGT~l~~~~~~~-----~~~~pv~gin~~G~lGFL~~~~~~~~~~~~l~~i~ 113 (305)
T PRK02645 50 -------F---LASASELIDLAIVL-GGDGTVLAAARHLA-----PHDIPILSVNVGGHLGFLTHPRDLLQDESVWDRLQ 113 (305)
T ss_pred -------h---hhccccCcCEEEEE-CCcHHHHHHHHHhc-----cCCCCEEEEecCCcceEecCchhhcchHHHHHHHH
Confidence 0 01111346766665 99999998886653 25789999997 3 676543 34556665
Q ss_pred HcCC
Q 028256 168 DEGF 171 (211)
Q Consensus 168 ~~g~ 171 (211)
+..|
T Consensus 114 ~g~~ 117 (305)
T PRK02645 114 EDRY 117 (305)
T ss_pred cCCc
Confidence 5443
No 73
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=63.41 E-value=39 Score=26.52 Aligned_cols=68 Identities=19% Similarity=0.220 Sum_probs=35.5
Q ss_pred cCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHH--------------HHHHHHHHcCCCCcccccce
Q 028256 115 ADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLL--------------SFIDKAVDEGFIAPAARYII 180 (211)
Q Consensus 115 sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~--------------~~l~~~~~~g~i~~~~~~~i 180 (211)
.+++++.--|++--.+++++.. ..... |||+++..+. ++.=. ...+.+. ...-+
T Consensus 55 t~~I~ly~E~~~d~~~f~~~~~--~a~~~-KPVv~lk~Gr-t~~g~~aa~sHTgslag~~~~~~a~~--------~~aGv 122 (138)
T PF13607_consen 55 TRVIVLYLEGIGDGRRFLEAAR--RAARR-KPVVVLKAGR-TEAGARAAASHTGSLAGDDAVYDAAL--------RQAGV 122 (138)
T ss_dssp --EEEEEES--S-HHHHHHHHH--HHCCC-S-EEEEE----------------------HHHHHHHH--------HHCTE
T ss_pred CCEEEEEccCCCCHHHHHHHHH--HHhcC-CCEEEEeCCC-chhhhhhhhccCCcccCcHHHHHHHH--------HHcCc
Confidence 5677777888988888888765 33333 9999997642 11100 0001111 11237
Q ss_pred EEcCCHHHHHHHhh
Q 028256 181 VSAQTAHELICKLE 194 (211)
Q Consensus 181 ~~~~d~ee~~~~l~ 194 (211)
+.++|++|+++..+
T Consensus 123 ~~v~~~~el~~~~~ 136 (138)
T PF13607_consen 123 VRVDDLDELLDAAK 136 (138)
T ss_dssp EEESSHHHHHHHHC
T ss_pred eEECCHHHHHHHHH
Confidence 88999999998764
No 74
>PRK09330 cell division protein FtsZ; Validated
Probab=62.52 E-value=43 Score=31.01 Aligned_cols=54 Identities=19% Similarity=0.291 Sum_probs=33.0
Q ss_pred ChhHHHHHHHHhcCCeEEEEecCcCCCCCCCCCCCceeeecCCHHHHHHHHHHhcCEEEEec
Q 028256 61 GLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALP 122 (211)
Q Consensus 61 GlM~a~a~gA~~~gG~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~Rk~~m~~~sDa~Ivlp 122 (211)
|.=-.+++-|.+.|..+++|.|..+. .|.... ...-..-...|.+.+|.+|++|
T Consensus 114 GaapvIA~iake~g~ltvaVvt~PF~-fEG~~r-------~~nA~~gL~~L~~~~D~vIvi~ 167 (384)
T PRK09330 114 GAAPVVAEIAKELGILTVAVVTKPFS-FEGKKR-------MKQAEEGIEELRKHVDTLIVIP 167 (384)
T ss_pred HHHHHHHHHHHHcCCcEEEEEecCcc-ccchhH-------HHHHHHHHHHHHHHCCEEEEEe
Confidence 44447889999999999999874431 111100 0011233445677889988887
No 75
>PF09152 DUF1937: Domain of unknown function (DUF1937); InterPro: IPR015235 This entry is represented by Bacteriophage N15, Gp57. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a set of hypothetical bacterial and phage proteins whose exact function has not, as yet, been described. ; PDB: 1T1J_A.
Probab=62.50 E-value=11 Score=29.15 Aligned_cols=39 Identities=21% Similarity=0.258 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCEEEEec--C---CcCcHHHHHHHHHHHHhCCCCCcEEEE
Q 028256 106 QRKAEMARQADAFIALP--G---GYGTLEELLEVITWAQLGIHDKPVGLL 150 (211)
Q Consensus 106 ~Rk~~m~~~sDa~Ivlp--G---G~GTL~El~~~~~~~~lg~~~kPiill 150 (211)
+=.+.+++.||++||+. | +.|+.-|+-.+.+ +++||.++
T Consensus 71 ~~d~~~L~~c~~lvV~~i~GW~~S~Gi~~Ei~~a~~------~~~~V~~~ 114 (116)
T PF09152_consen 71 DWDRPFLDACDELVVLDIPGWDDSEGIWAEIEAAEE------MGMPVFLY 114 (116)
T ss_dssp HHHHHHHHH-SEEEE---TTGGG-HHHHHHHHHHHH------TT-EEEEH
T ss_pred HHhHHHHHhcceeEEecCCCccccccHHHHHHHHHH------cCCeEEEe
Confidence 34566789999999985 4 4799999998887 78999874
No 76
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=62.37 E-value=97 Score=26.25 Aligned_cols=19 Identities=11% Similarity=0.146 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHcCCeEEe
Q 028256 37 LAAIQLGKQLVERNIDLVY 55 (211)
Q Consensus 37 ~~A~~lG~~la~~g~~lv~ 55 (211)
+.+.++-+..-+.|++.+=
T Consensus 29 ~~~~~~l~~A~~~Gi~~iD 47 (285)
T cd06660 29 EEAAAAVRAALDAGINFID 47 (285)
T ss_pred HHHHHHHHHHHHcCCCeEE
Confidence 3556666666678887753
No 77
>COG0163 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism]
Probab=61.44 E-value=17 Score=30.48 Aligned_cols=80 Identities=16% Similarity=0.171 Sum_probs=52.4
Q ss_pred cCEEEEecCCcCcHHHHHHHHHHHHhC-------CCCCcEEEEeCCccch--hHHHHHHHHHHcCCCCcccccceEEcCC
Q 028256 115 ADAFIALPGGYGTLEELLEVITWAQLG-------IHDKPVGLLNVDGYYN--SLLSFIDKAVDEGFIAPAARYIIVSAQT 185 (211)
Q Consensus 115 sDa~IvlpGG~GTL~El~~~~~~~~lg-------~~~kPiill~~~g~~~--~l~~~l~~~~~~g~i~~~~~~~i~~~~d 185 (211)
.|+.|+.|.+..||..+..=++-+-+. +.++|.+|+-.+-=+. +|.++++-...-+.|-|....+++-=.+
T Consensus 81 ~~gMiI~PCSmkTla~IA~G~~dnLi~RAAdV~LKErR~LVLv~REtPl~~ihLeNMlkl~~~GaiI~Pp~PaFY~~P~s 160 (191)
T COG0163 81 TDGMIIAPCSMKTLAAIAHGFADNLITRAADVALKERRPLVLVPRETPLSLIHLENMLKLAEMGAIIMPPMPAFYHKPQS 160 (191)
T ss_pred cCcEEEEeCcHHHHHHHHhcccccHHHHHHHHHHhhCCceEEEeccCCccHHHHHHHHHHHHCCCEecCCChhhhcCCCC
Confidence 489999999999999988655433332 3578988885542222 2333333222234455666667777789
Q ss_pred HHHHHHHhh
Q 028256 186 AHELICKLE 194 (211)
Q Consensus 186 ~ee~~~~l~ 194 (211)
.||+++++.
T Consensus 161 ieDlvd~~v 169 (191)
T COG0163 161 IEDLVDFVV 169 (191)
T ss_pred HHHHHHHHH
Confidence 999988875
No 78
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=61.40 E-value=22 Score=31.10 Aligned_cols=38 Identities=13% Similarity=0.158 Sum_probs=30.0
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEe
Q 028256 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVY 55 (211)
Q Consensus 18 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~ 55 (211)
+++|+|.+|..+...+.-.+.++.+.+.|.+.||.++.
T Consensus 3 ~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~ 40 (296)
T PRK14569 3 NEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVG 40 (296)
T ss_pred CcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEE
Confidence 45788887776666666678999999999999998653
No 79
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=61.39 E-value=22 Score=31.20 Aligned_cols=35 Identities=11% Similarity=0.026 Sum_probs=25.3
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEec
Q 028256 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYG 56 (211)
Q Consensus 19 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~G 56 (211)
++|+|+. +.+ .+.-.+.+.++.++|.++|+.+..-
T Consensus 1 m~v~iv~--~~~-k~~~~~~~~~I~~~L~~~g~~v~v~ 35 (277)
T PRK03708 1 MRFGIVA--RRD-KEEALKLAYRVYDFLKVSGYEVVVD 35 (277)
T ss_pred CEEEEEe--cCC-CHHHHHHHHHHHHHHHHCCCEEEEe
Confidence 4688883 333 3455677889999999999987763
No 80
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=61.16 E-value=36 Score=27.99 Aligned_cols=67 Identities=21% Similarity=0.178 Sum_probs=42.9
Q ss_pred cCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCCCcccccceEEcCCH-HHHHHHh
Q 028256 115 ADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTA-HELICKL 193 (211)
Q Consensus 115 sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~-ee~~~~l 193 (211)
.+.+|+.+||+=.-+|-...+. ....+|.|+.+ ++.+++ .+ +.+..+.+....++ +++-+.+
T Consensus 72 ~~~ViaTGGG~v~~~enr~~l~------~~g~vv~L~~~--~e~l~~---Rl------~~~~~RPll~~~~~~~~l~~L~ 134 (172)
T COG0703 72 DNAVIATGGGAVLSEENRNLLK------KRGIVVYLDAP--FETLYE---RL------QRDRKRPLLQTEDPREELEELL 134 (172)
T ss_pred CCeEEECCCccccCHHHHHHHH------hCCeEEEEeCC--HHHHHH---Hh------ccccCCCcccCCChHHHHHHHH
Confidence 3699999999999999887764 23477777764 344443 32 23344556667777 5466666
Q ss_pred hhhcc
Q 028256 194 EVFFF 198 (211)
Q Consensus 194 ~~~~~ 198 (211)
++-.|
T Consensus 135 ~~R~~ 139 (172)
T COG0703 135 EERQP 139 (172)
T ss_pred HHHHH
Confidence 55444
No 81
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=61.01 E-value=48 Score=29.32 Aligned_cols=61 Identities=25% Similarity=0.297 Sum_probs=35.9
Q ss_pred cCcceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC------------------------------eEEecCCCCChhHH
Q 028256 16 SRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNI------------------------------DLVYGGGSIGLMGL 65 (211)
Q Consensus 16 ~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~------------------------------~lv~GGg~~GlM~a 65 (211)
+.+++|+|+. +.. .+...+.+.++.++|.++|+ .+|+-||. |.|--
T Consensus 3 ~~~~~v~iv~--~~~-~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGD-Gt~l~ 78 (291)
T PRK02155 3 SQFKTVALIG--RYQ-TPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVVLGGD-GTMLG 78 (291)
T ss_pred CcCCEEEEEe--cCC-CHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEEECCc-HHHHH
Confidence 4466788883 222 24444556666666654432 23445566 77776
Q ss_pred HHHHHHhcCCeEEEE
Q 028256 66 VSQAVYDGGRHVLGV 80 (211)
Q Consensus 66 ~a~gA~~~gG~viGv 80 (211)
+++.....+-.++||
T Consensus 79 ~~~~~~~~~~pilGI 93 (291)
T PRK02155 79 IGRQLAPYGVPLIGI 93 (291)
T ss_pred HHHHhcCCCCCEEEE
Confidence 666666666778887
No 82
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=60.26 E-value=46 Score=27.32 Aligned_cols=80 Identities=11% Similarity=0.089 Sum_probs=48.2
Q ss_pred hcCEEEEecCCcCcHHHHHHHHH-----HH--HhCCCCCcEEEEeCCccchh-HH-HHHHHHHHcCC--CCcccccceEE
Q 028256 114 QADAFIALPGGYGTLEELLEVIT-----WA--QLGIHDKPVGLLNVDGYYNS-LL-SFIDKAVDEGF--IAPAARYIIVS 182 (211)
Q Consensus 114 ~sDa~IvlpGG~GTL~El~~~~~-----~~--~lg~~~kPiill~~~g~~~~-l~-~~l~~~~~~g~--i~~~~~~~i~~ 182 (211)
.+|++||.|-..+|+.-+..=++ .. ..-..++|+++.=.+ .|.. .. +=++.+.+.|+ +++. ...+.-
T Consensus 75 ~aD~~vIaPATantiAkiA~GiaD~Llt~~a~~~L~~~~pv~i~P~~-m~~~~~~~~Nl~~L~~~G~~ii~P~-~g~~~~ 152 (181)
T TIGR00421 75 PFDGMVVVPCSMKTLSAIANGYADNLITRAADVCLKERRKLVLVPRE-TPLNSIHLENMLRLSRMGAIILPPM-PAFYTR 152 (181)
T ss_pred hhCEEEEecCCHhHHHHHHcccCCCHHHHHHHHHHhcCCCEEEEeCC-CcCCHHHHHHHHHHHHCCCEEECCC-CcccCC
Confidence 58999999999999887753221 00 111257899988654 4543 21 22345555554 3332 244555
Q ss_pred cCCHHHHHHHhhh
Q 028256 183 AQTAHELICKLEV 195 (211)
Q Consensus 183 ~~d~ee~~~~l~~ 195 (211)
-.+++|+++++..
T Consensus 153 p~~~~~~~~~i~~ 165 (181)
T TIGR00421 153 PKSVEDMIDFIVG 165 (181)
T ss_pred CCCHHHHHHHHHH
Confidence 6889997777753
No 83
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=60.01 E-value=1.4e+02 Score=27.22 Aligned_cols=71 Identities=18% Similarity=0.129 Sum_probs=42.0
Q ss_pred cCEEE-EecCCcCcHHHHHHHHHHHHhC-CCCCcEEEEeCCc-cchhHHHHHHHHHHcCCCCcccccceEEcCCHHHHHH
Q 028256 115 ADAFI-ALPGGYGTLEELLEVITWAQLG-IHDKPVGLLNVDG-YYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELIC 191 (211)
Q Consensus 115 sDa~I-vlpGG~GTL~El~~~~~~~~lg-~~~kPiill~~~g-~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee~~~ 191 (211)
.|+++ .++|++...+++.+.+.-..-. ..+|||++- ..| ..+.... .+.+.|. .+.++++++++++
T Consensus 311 vd~vlv~~~~~~~~~~~va~~i~~~~~~~~~~kPvv~~-~~g~~~~~~~~---~L~~~Gi-------~ip~f~~pe~A~~ 379 (388)
T PRK00696 311 VKAILVNIFGGITRCDVIAEGIIAAVKEVGVTVPLVVR-LEGTNVELGKK---ILAESGL-------NIIAADTLDDAAQ 379 (388)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHhcCCCCcEEEE-eCCCCHHHHHH---HHHHCCC-------CceecCCHHHHHH
Confidence 46654 4567777777777776543322 157999554 333 2233332 2333231 1567999999999
Q ss_pred Hhhhh
Q 028256 192 KLEVF 196 (211)
Q Consensus 192 ~l~~~ 196 (211)
.+.+.
T Consensus 380 al~~~ 384 (388)
T PRK00696 380 KAVEA 384 (388)
T ss_pred HHHHH
Confidence 98754
No 84
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=59.99 E-value=48 Score=25.40 Aligned_cols=72 Identities=21% Similarity=0.396 Sum_probs=42.9
Q ss_pred HHHHHHHHHhcCEEEEecC--CcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCCCcccccceEE
Q 028256 105 HQRKAEMARQADAFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVS 182 (211)
Q Consensus 105 ~~Rk~~m~~~sDa~IvlpG--G~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~ 182 (211)
.+....++..||++|...- |+|+ =+.|++. .++|+++-+.. .+..++ .++ ....++-
T Consensus 83 ~~~l~~~~~~~di~v~~s~~e~~~~--~~~Ea~~------~g~pvI~~~~~-~~~e~~-------~~~-----~~g~~~~ 141 (172)
T PF00534_consen 83 DDELDELYKSSDIFVSPSRNEGFGL--SLLEAMA------CGCPVIASDIG-GNNEII-------NDG-----VNGFLFD 141 (172)
T ss_dssp HHHHHHHHHHTSEEEE-BSSBSS-H--HHHHHHH------TT-EEEEESST-HHHHHS-------GTT-----TSEEEES
T ss_pred ccccccccccceecccccccccccc--ccccccc------cccceeecccc-CCceee-------ccc-----cceEEeC
Confidence 4556677888998887743 3333 4566666 78999988754 333322 111 1233444
Q ss_pred cCCHHHHHHHhhhhc
Q 028256 183 AQTAHELICKLEVFF 197 (211)
Q Consensus 183 ~~d~ee~~~~l~~~~ 197 (211)
..|++++.+.|.+..
T Consensus 142 ~~~~~~l~~~i~~~l 156 (172)
T PF00534_consen 142 PNDIEELADAIEKLL 156 (172)
T ss_dssp TTSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 668899998887654
No 85
>PRK11914 diacylglycerol kinase; Reviewed
Probab=59.82 E-value=1.1e+02 Score=26.71 Aligned_cols=34 Identities=24% Similarity=0.270 Sum_probs=16.6
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCe
Q 028256 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNID 52 (211)
Q Consensus 18 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~ 52 (211)
|+++.++.-...+... ..+...++-+.|.++|+.
T Consensus 8 ~~~~~iI~NP~sG~g~-~~~~~~~~~~~l~~~g~~ 41 (306)
T PRK11914 8 IGKVTVLTNPLSGHGA-APHAAERAIARLHHRGVD 41 (306)
T ss_pred CceEEEEECCCCCCCc-HHHHHHHHHHHHHHcCCe
Confidence 4556655433333222 223445566667666654
No 86
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=59.01 E-value=12 Score=28.37 Aligned_cols=40 Identities=28% Similarity=0.402 Sum_probs=25.1
Q ss_pred EEEecCCcCcHHHHHHHHHHHHhCCC-C-CcEEEEeCCccchhHH
Q 028256 118 FIALPGGYGTLEELLEVITWAQLGIH-D-KPVGLLNVDGYYNSLL 160 (211)
Q Consensus 118 ~IvlpGG~GTL~El~~~~~~~~lg~~-~-kPiill~~~g~~~~l~ 160 (211)
.|+.-||=||++|+...+. +.... + .|+.++-. |=-++|-
T Consensus 52 ~vvv~GGDGTi~~vvn~l~--~~~~~~~~~plgiiP~-GTgNdfa 93 (124)
T smart00046 52 RVLVCGGDGTVGWVLNALD--KRELPLPEPPVAVLPL-GTGNDLA 93 (124)
T ss_pred EEEEEccccHHHHHHHHHH--hcccccCCCcEEEeCC-CChhHHH
Confidence 7778999999999987663 22211 1 57777732 3334443
No 87
>PRK12361 hypothetical protein; Provisional
Probab=58.99 E-value=19 Score=34.39 Aligned_cols=43 Identities=28% Similarity=0.371 Sum_probs=29.7
Q ss_pred HHHHHHHHHHcCC-eEEecCCCCChhHHHHHHHHhcCCeEEEEecC
Q 028256 39 AIQLGKQLVERNI-DLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPK 83 (211)
Q Consensus 39 A~~lG~~la~~g~-~lv~GGg~~GlM~a~a~gA~~~gG~viGv~P~ 83 (211)
|.++.+..++.|+ .||..||. |.-..+..+.... +..+||+|.
T Consensus 286 a~~la~~~~~~~~d~Viv~GGD-GTl~ev~~~l~~~-~~~lgiiP~ 329 (547)
T PRK12361 286 AEALAKQARKAGADIVIACGGD-GTVTEVASELVNT-DITLGIIPL 329 (547)
T ss_pred HHHHHHHHHhcCCCEEEEECCC-cHHHHHHHHHhcC-CCCEEEecC
Confidence 4556666666665 45556666 9888888888754 467999994
No 88
>PF01820 Dala_Dala_lig_N: D-ala D-ala ligase N-terminus; InterPro: IPR011127 This entry represents the N-terminal region of the D-alanine--D-alanine ligase enzyme (6.3.2.4 from EC) which is thought to be involved in substrate binding []. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity, 0009252 peptidoglycan biosynthetic process, 0005618 cell wall; PDB: 4EG0_B 3E5N_A 3RFC_A 3R5F_A 1IOV_A 1IOW_A 2DLN_A 3Q1K_D 3I12_C 3N8D_B ....
Probab=58.98 E-value=11 Score=28.63 Aligned_cols=36 Identities=17% Similarity=0.226 Sum_probs=28.6
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEE
Q 028256 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV 54 (211)
Q Consensus 19 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv 54 (211)
|+|+|++|......+.=...|+.+-+.|.+.+|.++
T Consensus 1 m~v~vlfGG~S~EheVSl~Sa~~v~~~L~~~~y~v~ 36 (117)
T PF01820_consen 1 MRVAVLFGGRSSEHEVSLRSARNVYEALDKEKYEVI 36 (117)
T ss_dssp EEEEEEEETSSTTHHHHHHHHHHHHHHSHTTTEEEE
T ss_pred CeEEEEeccCchhHHHHHHHHHHHHHHHhhhcceEE
Confidence 467777776666666667889999999999999886
No 89
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=58.54 E-value=55 Score=28.99 Aligned_cols=61 Identities=20% Similarity=0.280 Sum_probs=38.5
Q ss_pred cCcceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeE------------------------------EecCCCCChhHH
Q 028256 16 SRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDL------------------------------VYGGGSIGLMGL 65 (211)
Q Consensus 16 ~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~l------------------------------v~GGg~~GlM~a 65 (211)
+++++|+|+. +.. ++...+.+.++.++|.++|+.+ ++=||. |.+=.
T Consensus 3 ~~~~~i~iv~--~~~-~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~lGGD-GT~L~ 78 (292)
T PRK03378 3 NHFKCIGIVG--HPR-HPTALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIGQQADLAIVVGGD-GNMLG 78 (292)
T ss_pred ccCCEEEEEE--eCC-CHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcCCCCCEEEEECCc-HHHHH
Confidence 4577899984 322 4556677788888776554322 223345 77777
Q ss_pred HHHHHHhcCCeEEEE
Q 028256 66 VSQAVYDGGRHVLGV 80 (211)
Q Consensus 66 ~a~gA~~~gG~viGv 80 (211)
+++.+...+-.++||
T Consensus 79 aa~~~~~~~~Pilgi 93 (292)
T PRK03378 79 AARVLARYDIKVIGI 93 (292)
T ss_pred HHHHhcCCCCeEEEE
Confidence 777666666677887
No 90
>PRK06756 flavodoxin; Provisional
Probab=58.17 E-value=17 Score=28.10 Aligned_cols=33 Identities=12% Similarity=0.233 Sum_probs=20.9
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeE
Q 028256 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDL 53 (211)
Q Consensus 18 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~l 53 (211)
|++|.|+.+|..++.. +.|+.+++.|.+.|+.+
T Consensus 1 mmkv~IiY~S~tGnTe---~vA~~ia~~l~~~g~~v 33 (148)
T PRK06756 1 MSKLVMIFASMSGNTE---EMADHIAGVIRETENEI 33 (148)
T ss_pred CceEEEEEECCCchHH---HHHHHHHHHHhhcCCeE
Confidence 3567777777776543 45677777776665543
No 91
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=57.84 E-value=28 Score=31.44 Aligned_cols=51 Identities=16% Similarity=0.204 Sum_probs=36.2
Q ss_pred HHhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCC-----ccchhHHHHHHH
Q 028256 112 ARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD-----GYYNSLLSFIDK 165 (211)
Q Consensus 112 ~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~~-----g~~~~l~~~l~~ 165 (211)
.+..|+|||+-| .-||+|-..++++.-- .+|||||.+.- --.|...+++..
T Consensus 75 ~~~~dG~VVtHG-TDTme~TA~~Ls~~l~--~~kPVVlTGsmrp~~~~~sDg~~NL~~A 130 (336)
T TIGR00519 75 YDDYDGFVITHG-TDTMAYTAAALSFMLE--TPKPVVFTGAQRSSDRPSSDAALNLLCA 130 (336)
T ss_pred HhcCCeEEEccC-CchHHHHHHHHHHHcC--CCCCEEEECCCCCCCCcCcchHHHHHHH
Confidence 345899999985 7999999988876433 28999998651 234556665543
No 92
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=57.73 E-value=1.4e+02 Score=26.57 Aligned_cols=110 Identities=19% Similarity=0.254 Sum_probs=55.7
Q ss_pred CcchHHHHHHHhhhhcCcceEEE----EeCCCCCCCHH-HHHHHHHHHHHHHH----cCCeEEe---cCCC-CChhHHHH
Q 028256 1 METQQQQQQAAAALKSRFKRVCV----FCGSSPGKSPS-YQLAAIQLGKQLVE----RNIDLVY---GGGS-IGLMGLVS 67 (211)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~I~V----fggs~~~~~~~-~~~~A~~lG~~la~----~g~~lv~---GGg~-~GlM~a~a 67 (211)
+||..+.+.+..+ ..+|-+ ..|...+.+|+ -++.|++.-+.|-+ ...-+++ |||. .|.=-.++
T Consensus 32 inTd~~~L~~~~a----~~ki~iG~~~t~g~GaG~~~~~G~~~a~e~~~~I~~~le~~D~v~i~aglGGGTGSG~ap~ia 107 (303)
T cd02191 32 VNTDAQDLLGLEA----ENRVLIGQARTKGLGAGANPELGAEAAEEVQEAIDNIPVHVDMVFITAGLGGGTGTGGAPVVA 107 (303)
T ss_pred EECcHHHHhcCCC----CcEEecCCccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCccchhHHHHHH
Confidence 3566666765442 122222 12333445553 34444444444433 2333333 3333 35566667
Q ss_pred HHHHhcCCeEEEEecCcCCCCCCCCCCCceeeecCCHHHHHHHHHHhcCEEEEec
Q 028256 68 QAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALP 122 (211)
Q Consensus 68 ~gA~~~gG~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~Rk~~m~~~sDa~Ivlp 122 (211)
+.+++.+..+++|.|..+.. |.... ...-......|.+.+|.+|+++
T Consensus 108 ~~~ke~~~~~~~vvt~Pf~~-Eg~~~-------~~NA~~~l~~L~~~~D~~iv~d 154 (303)
T cd02191 108 EHLKRIGTLTVAVVTLPFSD-EGGIR-------MLNAAEGFQTLVREVDNLMVIP 154 (303)
T ss_pred HHHHHhCCCEEEEEeCCccc-CCccc-------hhhHHHHHHHHHHhCCEEEEEe
Confidence 88999998999997754321 11111 1111234445667788888776
No 93
>cd00587 HCP_like The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved alpha-beta rossman fold domain. HCP, formerly known as prismane, is thought to play a role in nitrogen metabolism but its specific function is unknown. Acetyl-CoA synthase (ACS), is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide and CoA.
Probab=57.54 E-value=22 Score=31.15 Aligned_cols=151 Identities=15% Similarity=0.185 Sum_probs=78.0
Q ss_pred cCcceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEecCCCCChhHHHHHHHHhcC-----CeEEEEecCcCCCCCC
Q 028256 16 SRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGG-----RHVLGVIPKTLMPREI 90 (211)
Q Consensus 16 ~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~a~gA~~~g-----G~viGv~P~~~~~~e~ 90 (211)
-+++-|++++|..... .+.+...+++++|-++++-|++.|+ +.+. ..++| |...|+ |..+ +..
T Consensus 92 G~I~Gv~~ivGC~n~~--~~~~~~~~iakeL~k~d~LVlt~GC--~a~~-----l~k~gl~~~~g~~~gi-P~vl-~~G- 159 (258)
T cd00587 92 GTIPGVALIVGCNNDK--KQDKAYADIAKELMKRGVMVLATGC--AAEA-----LLKLGLEDGAGILGGL-PIVF-DMG- 159 (258)
T ss_pred CCCCeEEEEEeCCCCC--ccchHHHHHHHHHHhCCEEEEecch--HHHH-----HHhcCCccccccccCC-Ccee-ecc-
Confidence 3678899888877543 3334567899999999999998885 3332 23343 555554 4332 222
Q ss_pred CCCCCceeeecCCHHHHHHHHHH---hcC--EEEEecCCcCcHHHHHHH--HHHHHhCCCCCcEEEEeCC--cc-chhHH
Q 028256 91 TGDTVGEVKAVSGMHQRKAEMAR---QAD--AFIALPGGYGTLEELLEV--ITWAQLGIHDKPVGLLNVD--GY-YNSLL 160 (211)
Q Consensus 91 ~~~~~~~~~~~~~~~~Rk~~m~~---~sD--a~IvlpGG~GTL~El~~~--~~~~~lg~~~kPiill~~~--g~-~~~l~ 160 (211)
.+++....-.+..|-..... ..| ++++.|| -++|=.-+ +.+..+|. |+++= +. .| -..+.
T Consensus 160 ---sCvD~~~ai~~A~~lA~~fg~~~in~LP~~~~a~~---~~sqKAvAi~~g~l~lGI---pv~~G-p~~P~~~s~~v~ 229 (258)
T cd00587 160 ---NCVDNSHAANLALKLANMFGGYDRSDLPAVASAPG---AYSQKAAAIATGAVFLGV---PVHVG-PPLPVDGSIPVW 229 (258)
T ss_pred ---cchhHHHHHHHHHHHHHHhCCCCcccCceEEEccc---hhhHHHHHHHHHHHHcCC---ceeeC-CCCccccChhHH
Confidence 12222222233344433322 233 4666666 34443333 33444443 55542 21 11 12333
Q ss_pred HHHHHHHHcCCCCcccccceEEcCCHHHHHHHh
Q 028256 161 SFIDKAVDEGFIAPAARYIIVSAQTAHELICKL 193 (211)
Q Consensus 161 ~~l~~~~~~g~i~~~~~~~i~~~~d~ee~~~~l 193 (211)
++|.. +. ..-....+.+..||+++.+.+
T Consensus 230 ~~L~~----~~-~~~~g~~~~~~~dp~~~a~~i 257 (258)
T cd00587 230 KVLTP----EA-SDNEGGYFISVTDYQDIVQKA 257 (258)
T ss_pred HHHHh----cc-hhccCcEEEecCCHHHHHHHh
Confidence 33321 11 112333478889999988765
No 94
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=57.52 E-value=39 Score=28.07 Aligned_cols=70 Identities=23% Similarity=0.269 Sum_probs=40.5
Q ss_pred HHHHHhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCCCcccccceEEcCCHHH
Q 028256 109 AEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHE 188 (211)
Q Consensus 109 ~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee 188 (211)
..+...||++|.-...-|.-.=+.|+++ .++||+.-+..+. .+++. ......+.-.+|+++
T Consensus 258 ~~~~~~adi~i~ps~~e~~~~~~~Ea~~------~G~Pvi~s~~~~~-~~~i~------------~~~~g~~~~~~~~~~ 318 (359)
T cd03808 258 PELLAAADVFVLPSYREGLPRVLLEAMA------MGRPVIATDVPGC-REAVI------------DGVNGFLVPPGDAEA 318 (359)
T ss_pred HHHHHhccEEEecCcccCcchHHHHHHH------cCCCEEEecCCCc-hhhhh------------cCcceEEECCCCHHH
Confidence 3467889987654332222234667776 7999998766433 22211 111223444567888
Q ss_pred HHHHhhhhc
Q 028256 189 LICKLEVFF 197 (211)
Q Consensus 189 ~~~~l~~~~ 197 (211)
+.+.|.+..
T Consensus 319 ~~~~i~~l~ 327 (359)
T cd03808 319 LADAIERLI 327 (359)
T ss_pred HHHHHHHHH
Confidence 888887653
No 95
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=57.49 E-value=51 Score=28.57 Aligned_cols=72 Identities=19% Similarity=0.263 Sum_probs=45.5
Q ss_pred HHHHHHHHHhcCEEEEec-CCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCCCcccccceEEc
Q 028256 105 HQRKAEMARQADAFIALP-GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSA 183 (211)
Q Consensus 105 ~~Rk~~m~~~sDa~Ivlp-GG~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~ 183 (211)
.+....++..||++|+.. -|+|.. +.|+++ .++||+..+..|. .+++ .......+.-.
T Consensus 252 ~~~~~~~~~~ad~~v~ps~e~~g~~--~~Eama------~G~Pvi~~~~~~~-~e~i------------~~~~~G~~~~~ 310 (351)
T cd03804 252 DEELRDLYARARAFLFPAEEDFGIV--PVEAMA------SGTPVIAYGKGGA-LETV------------IDGVTGILFEE 310 (351)
T ss_pred HHHHHHHHHhCCEEEECCcCCCCch--HHHHHH------cCCCEEEeCCCCC-ccee------------eCCCCEEEeCC
Confidence 344566788999887532 566764 467777 7999999876542 2221 11122234445
Q ss_pred CCHHHHHHHhhhhc
Q 028256 184 QTAHELICKLEVFF 197 (211)
Q Consensus 184 ~d~ee~~~~l~~~~ 197 (211)
+|++++.+.|.++.
T Consensus 311 ~~~~~la~~i~~l~ 324 (351)
T cd03804 311 QTVESLAAAVERFE 324 (351)
T ss_pred CCHHHHHHHHHHHH
Confidence 78888888887664
No 96
>PRK15494 era GTPase Era; Provisional
Probab=57.47 E-value=63 Score=28.97 Aligned_cols=91 Identities=15% Similarity=0.166 Sum_probs=45.8
Q ss_pred HHhcCEEEEecCCcCcHHHHHHHHHHHHhCCCC-CcEEEEeCCccchhHHHHHHHHHHcCCCCcccccceEE----cCCH
Q 028256 112 ARQADAFIALPGGYGTLEELLEVITWAQLGIHD-KPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVS----AQTA 186 (211)
Q Consensus 112 ~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~-kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~----~~d~ 186 (211)
+..||++|++--..-++++....+ +..+.... .|++++|.-+..+.....+.....+... ....+.+ -+..
T Consensus 129 l~~aDvil~VvD~~~s~~~~~~~i-l~~l~~~~~p~IlViNKiDl~~~~~~~~~~~l~~~~~---~~~i~~iSAktg~gv 204 (339)
T PRK15494 129 LHSADLVLLIIDSLKSFDDITHNI-LDKLRSLNIVPIFLLNKIDIESKYLNDIKAFLTENHP---DSLLFPISALSGKNI 204 (339)
T ss_pred hhhCCEEEEEEECCCCCCHHHHHH-HHHHHhcCCCEEEEEEhhcCccccHHHHHHHHHhcCC---CcEEEEEeccCccCH
Confidence 567998777644433344432211 22222233 4555557644333222222222222111 0112222 3578
Q ss_pred HHHHHHhhhhccCceeEEee
Q 028256 187 HELICKLEVFFFFFFWLFSF 206 (211)
Q Consensus 187 ee~~~~l~~~~~~~~~~~~~ 206 (211)
++++++|.++.++..|+|.-
T Consensus 205 ~eL~~~L~~~l~~~~~~~~~ 224 (339)
T PRK15494 205 DGLLEYITSKAKISPWLYAE 224 (339)
T ss_pred HHHHHHHHHhCCCCCCCCCC
Confidence 99999999999988888853
No 97
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=56.89 E-value=1.1e+02 Score=27.04 Aligned_cols=66 Identities=18% Similarity=0.374 Sum_probs=37.1
Q ss_pred cCCeEEe---cCCC-CChhHHHHHHHHhcCCeEEEEecCcCCCCCCCCCCCceeeecCCHHHHHHHHHHhcCEEEEec
Q 028256 49 RNIDLVY---GGGS-IGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALP 122 (211)
Q Consensus 49 ~g~~lv~---GGg~-~GlM~a~a~gA~~~gG~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~Rk~~m~~~sDa~Ivlp 122 (211)
....+|+ |||. .|.--.+++-+.+.|-.+++|.|..+. .|.... ...-......|.+.+|.+|+++
T Consensus 85 ~d~v~i~aglGGGTGSG~ap~ia~~a~e~g~~~~~vvt~Pf~-~Eg~~~-------~~nA~~~l~~L~~~~d~~ivid 154 (304)
T cd02201 85 ADMVFITAGMGGGTGTGAAPVIAKIAKEMGALTVAVVTKPFS-FEGKKR-------MRQAEEGLEELRKHVDTLIVIP 154 (304)
T ss_pred CCEEEEeeccCCCcchhHHHHHHHHHHHcCCCEEEEEeCCcc-ccchhH-------HHHHHHHHHHHHHhCCEEEEEe
Confidence 4444555 4543 245555678888888888888653321 111100 0011234455667889888887
No 98
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=56.40 E-value=57 Score=26.99 Aligned_cols=80 Identities=16% Similarity=0.116 Sum_probs=50.5
Q ss_pred hcCEEEEecCCcCcHHHHHHHHHH-------HHhCCCCCcEEEEeCCccchhH--HHHHHHHHHcCCC-CcccccceEEc
Q 028256 114 QADAFIALPGGYGTLEELLEVITW-------AQLGIHDKPVGLLNVDGYYNSL--LSFIDKAVDEGFI-APAARYIIVSA 183 (211)
Q Consensus 114 ~sDa~IvlpGG~GTL~El~~~~~~-------~~lg~~~kPiill~~~g~~~~l--~~~l~~~~~~g~i-~~~~~~~i~~~ 183 (211)
.+|++||.|-..+|+.-+..=++- ...-..++|+++.-. .+|..- .+-++.+.+.|+. =+.....+.--
T Consensus 78 ~aD~~vIaPaTaNtlAKiA~GiaDnLlt~~a~~~L~~~~pvii~P~-~M~~~p~~~~Nl~~L~~~G~~vi~P~~g~~a~p 156 (185)
T PRK06029 78 GTDGMVIAPCSMKTLAKIAHGYSDNLITRAADVMLKERRRLVLCVR-ETPLHLGHLRNMTKLAEMGAIIMPPVPAFYHRP 156 (185)
T ss_pred hhCEEEEeeCCHhHHHHHHccccCcHHHHHHHHHHhcCCCEEEEec-cccCCHHHHHHHHHHHHCcCEEECCCcccccCC
Confidence 589999999999998776532211 011125799999865 477542 2334556666653 22233445556
Q ss_pred CCHHHHHHHhh
Q 028256 184 QTAHELICKLE 194 (211)
Q Consensus 184 ~d~ee~~~~l~ 194 (211)
.+.+|+++++.
T Consensus 157 ~~~~~~~~~~v 167 (185)
T PRK06029 157 QTLEDMVDQTV 167 (185)
T ss_pred CCHHHHHHHHH
Confidence 89999998875
No 99
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=56.06 E-value=58 Score=28.68 Aligned_cols=73 Identities=14% Similarity=0.203 Sum_probs=44.3
Q ss_pred HHHHHHHHHhcCEEEEecC--CcCcHHHHHHHHHHHHhCCCCCcEEEEe-CCccchhHHHHHHHHHHcCCCCcccccceE
Q 028256 105 HQRKAEMARQADAFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLLN-VDGYYNSLLSFIDKAVDEGFIAPAARYIIV 181 (211)
Q Consensus 105 ~~Rk~~m~~~sDa~IvlpG--G~GTL~El~~~~~~~~lg~~~kPiill~-~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~ 181 (211)
.+....+...+|++|.-.- |+| -=+.|+++ .++||+..+ .+| ..+++ .+ .....++
T Consensus 248 ~~~~~~~~~~~d~~v~~s~~Egf~--~~~lEAma------~G~Pvv~s~~~~g-~~eiv-------~~-----~~~G~lv 306 (359)
T PRK09922 248 WEVVQQKIKNVSALLLTSKFEGFP--MTLLEAMS------YGIPCISSDCMSG-PRDII-------KP-----GLNGELY 306 (359)
T ss_pred HHHHHHHHhcCcEEEECCcccCcC--hHHHHHHH------cCCCEEEeCCCCC-hHHHc-------cC-----CCceEEE
Confidence 3444445667898885433 333 34667776 799999988 544 33322 11 1122344
Q ss_pred EcCCHHHHHHHhhhhcc
Q 028256 182 SAQTAHELICKLEVFFF 198 (211)
Q Consensus 182 ~~~d~ee~~~~l~~~~~ 198 (211)
-.+|++++.+.|.++..
T Consensus 307 ~~~d~~~la~~i~~l~~ 323 (359)
T PRK09922 307 TPGNIDEFVGKLNKVIS 323 (359)
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 46899999999987653
No 100
>PRK08185 hypothetical protein; Provisional
Probab=55.72 E-value=1.5e+02 Score=26.28 Aligned_cols=101 Identities=13% Similarity=0.090 Sum_probs=57.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCeE-----EecCCCCC-----------hhHHHHHHHHhcCCeEEEEecCc---CC
Q 028256 26 GSSPGKSPSYQLAAIQLGKQLVERNIDL-----VYGGGSIG-----------LMGLVSQAVYDGGRHVLGVIPKT---LM 86 (211)
Q Consensus 26 gs~~~~~~~~~~~A~~lG~~la~~g~~l-----v~GGg~~G-----------lM~a~a~gA~~~gG~viGv~P~~---~~ 86 (211)
..+.-+.+++.+.++++.+.....|..| ..||...+ =.+.+.+-+.+.|-..+.+.-.. .+
T Consensus 98 D~S~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~~~~~~~t~peea~~f~~~TgvD~LAvaiGt~HG~y 177 (283)
T PRK08185 98 DGSLLPYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGGVSEIIYTDPEQAEDFVSRTGVDTLAVAIGTAHGIY 177 (283)
T ss_pred eCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccccccccccccCCCHHHHHHHHHhhCCCEEEeccCcccCCc
Confidence 3343456788889999988888777766 22331111 12333333333355555551110 01
Q ss_pred CCCCCCCCCceeeecCCHHHHHHHHHHhcCEEEEecCCcCcHHHHHHHH
Q 028256 87 PREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVI 135 (211)
Q Consensus 87 ~~e~~~~~~~~~~~~~~~~~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~ 135 (211)
+.. ..+.+ + .+|.+.+.+..|.-+|+-||+|+-+|-+.-.
T Consensus 178 ~~~-~kp~L-------~-~e~l~~I~~~~~iPLVlHGgsg~~~e~~~~a 217 (283)
T PRK08185 178 PKD-KKPEL-------Q-MDLLKEINERVDIPLVLHGGSANPDAEIAES 217 (283)
T ss_pred CCC-CCCCc-------C-HHHHHHHHHhhCCCEEEECCCCCCHHHHHHH
Confidence 100 00111 1 6777777777899999999999998887543
No 101
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=55.36 E-value=49 Score=29.04 Aligned_cols=60 Identities=25% Similarity=0.314 Sum_probs=40.4
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEecCCCCChhHHHHHHHHhcCCeEEEEecCcC
Q 028256 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTL 85 (211)
Q Consensus 18 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~a~gA~~~gG~viGv~P~~~ 85 (211)
++++-|- |++.+ ..+++++.||++|+.||-=+-..=-++++++.-.+..|.-+=|+|-.+
T Consensus 6 ~~~~lIT-GASsG-------IG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DL 65 (265)
T COG0300 6 GKTALIT-GASSG-------IGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADL 65 (265)
T ss_pred CcEEEEE-CCCch-------HHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcC
Confidence 3445454 66655 246789999999999988886655566777666665555566666444
No 102
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=55.20 E-value=25 Score=33.38 Aligned_cols=44 Identities=16% Similarity=0.326 Sum_probs=30.4
Q ss_pred HHHHHHHHHHcCC-eEEecCCCCChhHHHHHHHHhcC------CeEEEEecC
Q 028256 39 AIQLGKQLVERNI-DLVYGGGSIGLMGLVSQAVYDGG------RHVLGVIPK 83 (211)
Q Consensus 39 A~~lG~~la~~g~-~lv~GGg~~GlM~a~a~gA~~~g------G~viGv~P~ 83 (211)
|+++.+.++..++ .||.-||. |..-.+..|..... ...+||+|.
T Consensus 157 A~~la~~~~~~~~D~VV~vGGD-GTlnEVvNGL~~~~~~~~~~~~pLGiIPa 207 (481)
T PLN02958 157 AKEVVRTMDLSKYDGIVCVSGD-GILVEVVNGLLEREDWKTAIKLPIGMVPA 207 (481)
T ss_pred HHHHHHHhhhcCCCEEEEEcCC-CHHHHHHHHHhhCccccccccCceEEecC
Confidence 4455666655565 45666666 99999999887542 356999994
No 103
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=55.20 E-value=58 Score=28.92 Aligned_cols=59 Identities=22% Similarity=0.368 Sum_probs=38.7
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCe------------------------------------EEecCCCC
Q 028256 17 RFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNID------------------------------------LVYGGGSI 60 (211)
Q Consensus 17 ~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~------------------------------------lv~GGg~~ 60 (211)
.+++|+|+. +. ..+...+.+.++.++|.++|+. ++.| |.
T Consensus 4 ~~~~i~ii~--~~-~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lG-GD- 78 (296)
T PRK04539 4 PFHNIGIVT--RP-NTPDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELGQYCDLVAVLG-GD- 78 (296)
T ss_pred CCCEEEEEe--cC-CCHHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcCcCCCEEEEEC-Cc-
Confidence 367799984 32 2455667788888888665532 3344 45
Q ss_pred ChhHHHHHHHHhcCCeEEEE
Q 028256 61 GLMGLVSQAVYDGGRHVLGV 80 (211)
Q Consensus 61 GlM~a~a~gA~~~gG~viGv 80 (211)
|.|=.+++-+...+-.++||
T Consensus 79 GT~L~aa~~~~~~~~PilGI 98 (296)
T PRK04539 79 GTFLSVAREIAPRAVPIIGI 98 (296)
T ss_pred HHHHHHHHHhcccCCCEEEE
Confidence 77777777666667788887
No 104
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=54.94 E-value=65 Score=26.96 Aligned_cols=44 Identities=25% Similarity=0.278 Sum_probs=28.3
Q ss_pred HHHhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccc
Q 028256 111 MARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYY 156 (211)
Q Consensus 111 m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~~g~~ 156 (211)
+-+..++.|+++||. |...+++.+.-.. ...=+.|.++..+.+|
T Consensus 19 i~~~~~~~l~lsGGs-tp~~~y~~L~~~~-~i~w~~v~~f~~DEr~ 62 (219)
T cd01400 19 IAKRGRFSLALSGGS-TPKPLYELLAAAP-ALDWSKVHVFLGDERC 62 (219)
T ss_pred HHhcCeEEEEECCCc-cHHHHHHHhcccc-CCCCceEEEEEeeccc
Confidence 344578999999995 5557777765332 1222566777776666
No 105
>PF00861 Ribosomal_L18p: Ribosomal L18p/L5e family; InterPro: IPR005484 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes L18 from bacteria and L5 from eukaryotes. The ribosomal 5S RNA is the only known rRNA species to bind a ribosomal protein before its assembly into the ribosomal subunits []. In eukaryotes, the 5S rRNA molecule binds one protein species, a 34kDa protein which has been implicated in the intracellular transport of 5 S rRNA, while in bacteria it binds two or three different protein species []. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_M 4A1C_M 4A1A_M 4A17_M 3IZR_Q 3O58_E 1S1I_E 3IZS_Q 3O5H_E 1KQS_M ....
Probab=54.57 E-value=48 Score=25.31 Aligned_cols=41 Identities=24% Similarity=0.419 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHH----cCC-eEEecCC---CCChhHHHHHHHHhcCCe
Q 028256 36 QLAAIQLGKQLVE----RNI-DLVYGGG---SIGLMGLVSQAVYDGGRH 76 (211)
Q Consensus 36 ~~~A~~lG~~la~----~g~-~lv~GGg---~~GlM~a~a~gA~~~gG~ 76 (211)
.+.|+.+|+.||+ .|+ .++++=+ +.|-+.|++++|.++|-.
T Consensus 70 ~~aa~~vG~lla~ra~~~gi~~v~fdr~~~~y~grv~a~~~~~re~Gl~ 118 (119)
T PF00861_consen 70 VEAAYLVGELLAKRALEKGIAKVVFDRGGYKYHGRVKALADGAREGGLE 118 (119)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSEEEECTSTSSSSSHHHHHHHHHHHTTCB
T ss_pred EehHHHHHHHHHHHHHHcCCcEEEEcCCCCcccHHHHHHHHHHHHcCCC
Confidence 3677888888876 676 5566432 368999999999998843
No 106
>PRK13057 putative lipid kinase; Reviewed
Probab=54.01 E-value=26 Score=30.33 Aligned_cols=42 Identities=19% Similarity=0.403 Sum_probs=28.5
Q ss_pred HHHHHHHHHHcCC-eEEecCCCCChhHHHHHHHHhcCCeEEEEecC
Q 028256 39 AIQLGKQLVERNI-DLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPK 83 (211)
Q Consensus 39 A~~lG~~la~~g~-~lv~GGg~~GlM~a~a~gA~~~gG~viGv~P~ 83 (211)
|.++.+.+ +.++ .|+..||. |....++.+.... +..+||+|.
T Consensus 40 a~~~~~~~-~~~~d~iiv~GGD-GTv~~v~~~l~~~-~~~lgiiP~ 82 (287)
T PRK13057 40 LSEVIEAY-ADGVDLVIVGGGD-GTLNAAAPALVET-GLPLGILPL 82 (287)
T ss_pred HHHHHHHH-HcCCCEEEEECch-HHHHHHHHHHhcC-CCcEEEECC
Confidence 44555553 3443 45556666 9999999988765 467999994
No 107
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=53.93 E-value=54 Score=26.80 Aligned_cols=84 Identities=14% Similarity=0.188 Sum_probs=49.2
Q ss_pred HhcCEEEEecCCcCcHHHHHHHHHH-----HHhC-CCCCcEEEEeC--Cccchh--HHHHHHHHHHcCCC--Cccccc--
Q 028256 113 RQADAFIALPGGYGTLEELLEVITW-----AQLG-IHDKPVGLLNV--DGYYNS--LLSFIDKAVDEGFI--APAARY-- 178 (211)
Q Consensus 113 ~~sDa~IvlpGG~GTL~El~~~~~~-----~~lg-~~~kPiill~~--~g~~~~--l~~~l~~~~~~g~i--~~~~~~-- 178 (211)
..+|++||.|-..+|+.-+..=++- .-+- ..++|+++.-. ..+|+. ..+-++.+.+.|+. +++...
T Consensus 75 ~~aD~~vVaPaSanTlakiA~GiaDnLlt~~a~a~~~~~pv~i~PaMn~~M~~~p~~~~nl~~L~~~G~~vi~P~~g~la 154 (177)
T TIGR02113 75 KKADLFLVAPASANTIAHLAHGFADNIVTSVALALPPETPKLIAPAMNTKMYQNPITQRNIKILKKIGYQEIQPKESLLA 154 (177)
T ss_pred hhhCEEEEEeCCHHHHHHHHcCcCCcHHHHHHHHcCCCCCEEEEeCCCHHHhCCHHHHHHHHHHHHCCCEEECCCcCccc
Confidence 3689999999999998876532211 1111 23689998731 247754 33345566665553 333311
Q ss_pred ----ceEEcCCHHHHHHHhhhh
Q 028256 179 ----IIVSAQTAHELICKLEVF 196 (211)
Q Consensus 179 ----~i~~~~d~ee~~~~l~~~ 196 (211)
-.=-..+++++++.+.++
T Consensus 155 ~g~~g~g~~~~~~~i~~~~~~~ 176 (177)
T TIGR02113 155 CGDYGRGALADLDDILQTIKEI 176 (177)
T ss_pred CCCccccCCCCHHHHHHHHHHh
Confidence 122245788888888764
No 108
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=53.93 E-value=1.1e+02 Score=26.74 Aligned_cols=42 Identities=24% Similarity=0.430 Sum_probs=28.8
Q ss_pred HHHHHHHHH-----hcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcE
Q 028256 105 HQRKAEMAR-----QADAFIALPGGYGTLEELLEVITWAQLGIHDKPV 147 (211)
Q Consensus 105 ~~Rk~~m~~-----~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPi 147 (211)
.+|-+-|.+ ..|+++..-||.|+. ++..-+.|..+..++|++
T Consensus 48 ~~Ra~dL~~a~~d~~i~aI~~~rGG~ga~-rlL~~ld~~~~~~~pK~~ 94 (282)
T cd07025 48 EERAADLNAAFADPEIKAIWCARGGYGAN-RLLPYLDYDLIRANPKIF 94 (282)
T ss_pred HHHHHHHHHHhhCCCCCEEEEcCCcCCHH-HhhhhCCHHHHhhCCeEE
Confidence 556555544 368999999999995 466666777766555543
No 109
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=53.86 E-value=1.7e+02 Score=26.34 Aligned_cols=94 Identities=13% Similarity=0.023 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHHHHHcCCeE-----EecCCCCCh-----------hHHHHHHHHhcCCeEEEEecCcCCCCCCCCCCC
Q 028256 32 SPSYQLAAIQLGKQLVERNIDL-----VYGGGSIGL-----------MGLVSQAVYDGGRHVLGVIPKTLMPREITGDTV 95 (211)
Q Consensus 32 ~~~~~~~A~~lG~~la~~g~~l-----v~GGg~~Gl-----------M~a~a~gA~~~gG~viGv~P~~~~~~e~~~~~~ 95 (211)
-++-.+.++++.+..-..|..| ..||...|+ .+.+.+=+.+.|-..+.|.-... |-.|
T Consensus 110 ~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~~~TdPeeA~~Fv~~TgvD~LAvaiGt~------HG~Y 183 (307)
T PRK05835 110 FEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAPAIGTS------HGAF 183 (307)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccccccccCCCHHHHHHHHHhhCCCEEEEccCcc------cccc
Confidence 4555677788888777778776 224433331 24444444455655555521110 1000
Q ss_pred ceeeecCCH-HHHHHHHHHhcCEEEEecCCcCcHHHHH
Q 028256 96 GEVKAVSGM-HQRKAEMARQADAFIALPGGYGTLEELL 132 (211)
Q Consensus 96 ~~~~~~~~~-~~Rk~~m~~~sDa~IvlpGG~GTL~El~ 132 (211)
.. .-.+.+ ++|...+-+..+.-+||-||+|+-+|+.
T Consensus 184 k~-~~~p~L~f~~L~~I~~~~~iPLVLHGgSGip~e~~ 220 (307)
T PRK05835 184 KF-KGEPKLDFERLQEVKRLTNIPLVLHGASAIPDDVR 220 (307)
T ss_pred CC-CCCCccCHHHHHHHHHHhCCCEEEeCCCCCchHHh
Confidence 00 000112 5677777777899999999999999743
No 110
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=53.78 E-value=15 Score=31.46 Aligned_cols=38 Identities=29% Similarity=0.522 Sum_probs=29.2
Q ss_pred HHHHHhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchh
Q 028256 109 AEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNS 158 (211)
Q Consensus 109 ~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~ 158 (211)
.-+++.||++|.+-+..|= |++. ++|||++++.. ||+.
T Consensus 194 ~~Ll~~s~~VvtinStvGl-----EAll------~gkpVi~~G~~-~Y~~ 231 (269)
T PF05159_consen 194 YELLEQSDAVVTINSTVGL-----EALL------HGKPVIVFGRA-FYAG 231 (269)
T ss_pred HHHHHhCCEEEEECCHHHH-----HHHH------cCCceEEecCc-ccCC
Confidence 3578999999999998774 4454 79999999764 5553
No 111
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=53.77 E-value=34 Score=31.83 Aligned_cols=49 Identities=18% Similarity=0.198 Sum_probs=35.0
Q ss_pred cCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCC-----ccchhHHHHHHH
Q 028256 115 ADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD-----GYYNSLLSFIDK 165 (211)
Q Consensus 115 sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~~-----g~~~~l~~~l~~ 165 (211)
.|+|||..| .-||+|-..+++++--. .+|||||.+.- --.|...+++..
T Consensus 140 ~dGvVVtHG-TDTM~yTA~aLs~~l~~-~~kPVVlTGAqrp~~~~~sDa~~NL~~A 193 (404)
T TIGR02153 140 ADGVVVAHG-TDTMAYTAAALSFMFET-LPVPVVLVGAQRSSDRPSSDAALNLICA 193 (404)
T ss_pred CCcEEEecC-ChhHHHHHHHHHHHhhC-CCCCEEEECCCCCCCCCCchHHHHHHHH
Confidence 789999886 79999999888764432 37999998652 134566665543
No 112
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=53.70 E-value=1.2e+02 Score=26.76 Aligned_cols=42 Identities=24% Similarity=0.318 Sum_probs=28.5
Q ss_pred HHHHHHHHHh-----cCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcE
Q 028256 105 HQRKAEMARQ-----ADAFIALPGGYGTLEELLEVITWAQLGIHDKPV 147 (211)
Q Consensus 105 ~~Rk~~m~~~-----sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPi 147 (211)
.+|-+-|.+. .||++..-||.|+. ++..-+.+..+..++|++
T Consensus 52 ~~Ra~dL~~a~~Dp~i~aI~~~rGG~g~~-rlL~~lD~~~i~~~PK~f 98 (308)
T cd07062 52 EERAEELMAAFADPSIKAIIPTIGGDDSN-ELLPYLDYELIKKNPKIF 98 (308)
T ss_pred HHHHHHHHHHhcCCCCCEEEECCcccCHh-hhhhhcCHHHHhhCCCEE
Confidence 4555444433 58999999999995 466666776666566644
No 113
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=53.42 E-value=32 Score=29.86 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=18.2
Q ss_pred CCHHHHHHHHHHHHHHHHcCCe--EEecCCCCChhHHHHH
Q 028256 31 KSPSYQLAAIQLGKQLVERNID--LVYGGGSIGLMGLVSQ 68 (211)
Q Consensus 31 ~~~~~~~~A~~lG~~la~~g~~--lv~GGg~~GlM~a~a~ 68 (211)
.|+++.+.-.+--+.+.+.|+. ||.|||. +.+-...
T Consensus 25 id~~~i~~~a~~i~~~~~~g~eV~iVvGGGn--i~Rg~~~ 62 (238)
T COG0528 25 IDPEVLDRIANEIKELVDLGVEVAVVVGGGN--IARGYIG 62 (238)
T ss_pred CCHHHHHHHHHHHHHHHhcCcEEEEEECCCH--HHHhHHH
Confidence 4555543322333334445665 5999985 4444333
No 114
>TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family. A combination of crystal structure, molecular modeling, and bioinformatic data together suggest that members of this family, including YhbY of E. coli, are RNA binding proteins.
Probab=53.34 E-value=71 Score=23.65 Aligned_cols=55 Identities=16% Similarity=0.072 Sum_probs=37.2
Q ss_pred CCCCcEEEEeCCccchhHHHHHH-HHHHcCCCCcccccceEEcCCHHHHHHHhhhhcc
Q 028256 142 IHDKPVGLLNVDGYYNSLLSFID-KAVDEGFIAPAARYIIVSAQTAHELICKLEVFFF 198 (211)
Q Consensus 142 ~~~kPiill~~~g~~~~l~~~l~-~~~~~g~i~~~~~~~i~~~~d~ee~~~~l~~~~~ 198 (211)
.+-+|++.++.+|..+.+++.++ .+.....|.-+-... ..+|..|+.+.|++...
T Consensus 14 h~l~p~v~IGK~Glt~~vi~ei~~aL~~hELIKVkvl~~--~~~~~~e~a~~i~~~~~ 69 (95)
T TIGR00253 14 HHLKPVVLVGKNGLTEGVIKEIEQALEHRELIKVKVATE--DREDKTLIAEALVKETG 69 (95)
T ss_pred CCCCCeEEECCCCCCHHHHHHHHHHHHhCCcEEEEecCC--ChhHHHHHHHHHHHHHC
Confidence 34589999999999999999985 455656665332211 13466677777776544
No 115
>PLN02275 transferase, transferring glycosyl groups
Probab=53.04 E-value=1e+02 Score=27.50 Aligned_cols=70 Identities=16% Similarity=0.190 Sum_probs=41.7
Q ss_pred HHHHHHHHhcCEEEEec-C--CcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCCCcccccceEE
Q 028256 106 QRKAEMARQADAFIALP-G--GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVS 182 (211)
Q Consensus 106 ~Rk~~m~~~sDa~Ivlp-G--G~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~ 182 (211)
+.-..++..||++|+.. . +.|--.=+.|+++ .++||+..+.+|. .+ ++.+| ... +.
T Consensus 298 ~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA------~G~PVVa~~~gg~-~e-------iv~~g-----~~G-~l- 356 (371)
T PLN02275 298 EDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFG------CGLPVCAVSYSCI-GE-------LVKDG-----KNG-LL- 356 (371)
T ss_pred HHHHHHHHhCCEEEEeccccccccccHHHHHHHH------CCCCEEEecCCCh-HH-------HccCC-----CCe-EE-
Confidence 44455678999998631 2 2233345777787 7999999876542 22 22211 111 22
Q ss_pred cCCHHHHHHHhhhh
Q 028256 183 AQTAHELICKLEVF 196 (211)
Q Consensus 183 ~~d~ee~~~~l~~~ 196 (211)
++|++++.+.|.+.
T Consensus 357 v~~~~~la~~i~~l 370 (371)
T PLN02275 357 FSSSSELADQLLEL 370 (371)
T ss_pred ECCHHHHHHHHHHh
Confidence 35789888887653
No 116
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=52.92 E-value=55 Score=27.78 Aligned_cols=73 Identities=23% Similarity=0.322 Sum_probs=42.2
Q ss_pred HHHHHHHHhcCEEEEecCC------cCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCCCcccccc
Q 028256 106 QRKAEMARQADAFIALPGG------YGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYI 179 (211)
Q Consensus 106 ~Rk~~m~~~sDa~IvlpGG------~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~ 179 (211)
+....+...||++|...-. -|.-.=++|+++ .++|++..+..+. ..++ +++ ....
T Consensus 247 ~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a------~G~Pvi~~~~~~~-~~~i-------~~~-----~~g~ 307 (355)
T cd03799 247 EEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMA------MGLPVISTDVSGI-PELV-------EDG-----ETGL 307 (355)
T ss_pred HHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHH------cCCCEEecCCCCc-chhh-------hCC-----CceE
Confidence 4455667889987764221 222335777777 7999998776543 2222 111 1122
Q ss_pred eEEcCCHHHHHHHhhhhc
Q 028256 180 IVSAQTAHELICKLEVFF 197 (211)
Q Consensus 180 i~~~~d~ee~~~~l~~~~ 197 (211)
+.-.+|++++.+.|.++.
T Consensus 308 ~~~~~~~~~l~~~i~~~~ 325 (355)
T cd03799 308 LVPPGDPEALADAIERLL 325 (355)
T ss_pred EeCCCCHHHHHHHHHHHH
Confidence 333348888888887654
No 117
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=52.89 E-value=43 Score=24.59 Aligned_cols=70 Identities=21% Similarity=0.217 Sum_probs=37.9
Q ss_pred HHHHHHHhcCEEEEec-CCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCCCcccccceEEcCC
Q 028256 107 RKAEMARQADAFIALP-GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQT 185 (211)
Q Consensus 107 Rk~~m~~~sDa~Ivlp-GG~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d 185 (211)
....++..+|+.|..- =+.++-.-++|++. .++|++..+. + +..+. ...... +.+.+|
T Consensus 63 e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~------~G~pvi~~~~-~-~~~~~------------~~~~~~-~~~~~~ 121 (135)
T PF13692_consen 63 ELPEILAAADVGLIPSRFNEGFPNKLLEAMA------AGKPVIASDN-G-AEGIV------------EEDGCG-VLVAND 121 (135)
T ss_dssp HHHHHHHC-SEEEE-BSS-SCC-HHHHHHHC------TT--EEEEHH-H-CHCHS---------------SEE-EE-TT-
T ss_pred HHHHHHHhCCEEEEEeeCCCcCcHHHHHHHH------hCCCEEECCc-c-hhhhe------------eecCCe-EEECCC
Confidence 3455677799777532 13356667777776 7999998764 2 22221 111222 344999
Q ss_pred HHHHHHHhhhhc
Q 028256 186 AHELICKLEVFF 197 (211)
Q Consensus 186 ~ee~~~~l~~~~ 197 (211)
++++.+.|.+..
T Consensus 122 ~~~l~~~i~~l~ 133 (135)
T PF13692_consen 122 PEELAEAIERLL 133 (135)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998754
No 118
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=52.46 E-value=73 Score=27.12 Aligned_cols=71 Identities=15% Similarity=0.269 Sum_probs=40.9
Q ss_pred HHHHHHHHhcCEEEEec--CCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCCCcccccceEEc
Q 028256 106 QRKAEMARQADAFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSA 183 (211)
Q Consensus 106 ~Rk~~m~~~sDa~Ivlp--GG~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~ 183 (211)
+....+...||++|.-. .|+|. =+.|+++ .++|++..+..++-+ ++. ......+.-.
T Consensus 256 ~~~~~~~~~ad~~l~ps~~e~~g~--~~~Eam~------~g~PvI~~~~~~~~e-~~~------------~~~~g~~~~~ 314 (365)
T cd03825 256 ESLALIYSAADVFVVPSLQENFPN--TAIEALA------CGTPVVAFDVGGIPD-IVD------------HGVTGYLAKP 314 (365)
T ss_pred HHHHHHHHhCCEEEeccccccccH--HHHHHHh------cCCCEEEecCCCChh-hee------------CCCceEEeCC
Confidence 34456778899877643 33343 4666676 799999887754322 111 1111223334
Q ss_pred CCHHHHHHHhhhhc
Q 028256 184 QTAHELICKLEVFF 197 (211)
Q Consensus 184 ~d~ee~~~~l~~~~ 197 (211)
.|++++.+.|.+..
T Consensus 315 ~~~~~~~~~l~~l~ 328 (365)
T cd03825 315 GDPEDLAEGIEWLL 328 (365)
T ss_pred CCHHHHHHHHHHHH
Confidence 57777777776654
No 119
>PRK06703 flavodoxin; Provisional
Probab=51.94 E-value=20 Score=27.82 Aligned_cols=33 Identities=12% Similarity=0.110 Sum_probs=21.8
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeE
Q 028256 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDL 53 (211)
Q Consensus 18 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~l 53 (211)
|++|.|+.+|..++.. +.|+.+++.|.+.|+.+
T Consensus 1 mmkv~IiY~S~tGnT~---~iA~~ia~~l~~~g~~v 33 (151)
T PRK06703 1 MAKILIAYASMSGNTE---DIADLIKVSLDAFDHEV 33 (151)
T ss_pred CCeEEEEEECCCchHH---HHHHHHHHHHHhcCCce
Confidence 3466666677777543 45778888777777654
No 120
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=51.89 E-value=52 Score=26.99 Aligned_cols=88 Identities=16% Similarity=0.190 Sum_probs=53.9
Q ss_pred HHHhcCEEEEecCCcCcHHHHHHHHHHHH-----hC-CCCCcEEEEeC--Cccchh--HHHHHHHHHHcCCC--Cccccc
Q 028256 111 MARQADAFIALPGGYGTLEELLEVITWAQ-----LG-IHDKPVGLLNV--DGYYNS--LLSFIDKAVDEGFI--APAARY 178 (211)
Q Consensus 111 m~~~sDa~IvlpGG~GTL~El~~~~~~~~-----lg-~~~kPiill~~--~g~~~~--l~~~l~~~~~~g~i--~~~~~~ 178 (211)
+...+|++||.|-..+|+.-+..=++-.- +. ..++|+++.-. ...|.. ..+-++.+.+.|+. ++....
T Consensus 74 l~~~aD~~vIaPaTantlakiA~GiaDnllt~~~~a~~~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~vi~p~~g~ 153 (182)
T PRK07313 74 LAKRADLFLVAPATANTIAKLAHGIADDLVTSVALALPATTPKLIAPAMNTKMYENPATQRNLKTLKEDGVQEIEPKEGL 153 (182)
T ss_pred cccccCEEEEeeCCHhHHHHHHccccCcHHHHHHHHcCCCCCEEEEECCCHHHhcCHHHHHHHHHHHHCCCEEECCCCCc
Confidence 45679999999999999877653221110 11 24799998832 246654 22234566666653 333211
Q ss_pred ------ceEEcCCHHHHHHHhhhhcc
Q 028256 179 ------IIVSAQTAHELICKLEVFFF 198 (211)
Q Consensus 179 ------~i~~~~d~ee~~~~l~~~~~ 198 (211)
-.---.|++++++++.++..
T Consensus 154 la~~~~g~g~~~~~~~i~~~v~~~~~ 179 (182)
T PRK07313 154 LACGDEGYGALADIETILETIENTLK 179 (182)
T ss_pred cccCCccCCCCCCHHHHHHHHHHHhc
Confidence 13446789999999988654
No 121
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=51.69 E-value=86 Score=28.04 Aligned_cols=60 Identities=30% Similarity=0.356 Sum_probs=36.8
Q ss_pred cCcceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC----------------------------------------eEEe
Q 028256 16 SRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNI----------------------------------------DLVY 55 (211)
Q Consensus 16 ~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~----------------------------------------~lv~ 55 (211)
.++++|+++. +.. .+...+.++++.++|.++|+ .++.
T Consensus 3 ~~~~~I~iv~--~~~-~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~l 79 (306)
T PRK03372 3 TASRRVLLVA--HTG-RDEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELVLVL 79 (306)
T ss_pred CCccEEEEEe--cCC-CHHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcccCCCEEEEE
Confidence 4566788883 222 34455667777777655443 2333
Q ss_pred cCCCCChhHHHHHHHHhcCCeEEEE
Q 028256 56 GGGSIGLMGLVSQAVYDGGRHVLGV 80 (211)
Q Consensus 56 GGg~~GlM~a~a~gA~~~gG~viGv 80 (211)
| |. |.|=.+++-+...+-.++||
T Consensus 80 G-GD-GT~L~aar~~~~~~~PilGI 102 (306)
T PRK03372 80 G-GD-GTILRAAELARAADVPVLGV 102 (306)
T ss_pred c-CC-HHHHHHHHHhccCCCcEEEE
Confidence 3 45 77766666666677788887
No 122
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=51.66 E-value=30 Score=30.97 Aligned_cols=39 Identities=13% Similarity=0.074 Sum_probs=30.8
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEec
Q 028256 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYG 56 (211)
Q Consensus 18 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~G 56 (211)
|.+|+|++|..+...+.=...|+.+.+.|.+.||.++.-
T Consensus 1 ~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~v~~i 39 (347)
T PRK14572 1 MAKIAVFFGGSSTEHSISIRTGCFICATLHTMGHSVKPI 39 (347)
T ss_pred CcEEEEEECCCCcchHHHHHhHHHHHHHHhhcCCEEEEE
Confidence 457888887776666666789999999999999998544
No 123
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=51.60 E-value=1.7e+02 Score=25.88 Aligned_cols=102 Identities=17% Similarity=0.103 Sum_probs=58.3
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCeE-----EecCCCCCh-----------hHHHHHHHHhcCCeEEEEecCcCCCCCCCCC
Q 028256 30 GKSPSYQLAAIQLGKQLVERNIDL-----VYGGGSIGL-----------MGLVSQAVYDGGRHVLGVIPKTLMPREITGD 93 (211)
Q Consensus 30 ~~~~~~~~~A~~lG~~la~~g~~l-----v~GGg~~Gl-----------M~a~a~gA~~~gG~viGv~P~~~~~~e~~~~ 93 (211)
-+-++-.+.++++.+..-..|..| .-||...|+ .+.+.+=+.+.|-..+.|.-.. .|-
T Consensus 108 lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt------~HG 181 (286)
T PRK12738 108 FPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGT------AHG 181 (286)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHHHhCCCEEEeccCc------ccC
Confidence 334556677788888777777776 234433331 2334444444565555542111 011
Q ss_pred CCceeeecCCH-HHHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHhCC
Q 028256 94 TVGEVKAVSGM-HQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGI 142 (211)
Q Consensus 94 ~~~~~~~~~~~-~~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~ 142 (211)
.|. ..+.+ ++|.+.+-+..|.-+||-||+|+-+|-+.-. .++|.
T Consensus 182 ~Y~---~~p~Ldfd~l~~I~~~~~vPLVLHGgSG~~~e~~~ka--i~~GI 226 (286)
T PRK12738 182 LYS---KTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRT--IELGV 226 (286)
T ss_pred CCC---CCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHH--HHcCC
Confidence 110 01111 6788888888899999999999999887543 34554
No 124
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=51.53 E-value=65 Score=27.21 Aligned_cols=70 Identities=19% Similarity=0.171 Sum_probs=40.8
Q ss_pred HHHHHHHHhcCEEEEec--C--Cc-CcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCCCcccccce
Q 028256 106 QRKAEMARQADAFIALP--G--GY-GTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYII 180 (211)
Q Consensus 106 ~Rk~~m~~~sDa~Ivlp--G--G~-GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i 180 (211)
+....++..||++|.-. . |+ ++ +.|+++ .++||+..+..+ .+.+.. .....+
T Consensus 259 ~~~~~~~~~ad~~v~ps~~e~~~~~~~---~~Ea~a------~G~PvI~~~~~~-~~~i~~-------------~~~g~~ 315 (366)
T cd03822 259 EELPELFSAADVVVLPYRSADQTQSGV---LAYAIG------FGKPVISTPVGH-AEEVLD-------------GGTGLL 315 (366)
T ss_pred HHHHHHHhhcCEEEecccccccccchH---HHHHHH------cCCCEEecCCCC-hheeee-------------CCCcEE
Confidence 44556778899876432 1 33 34 445565 689999887654 332211 112234
Q ss_pred EEcCCHHHHHHHhhhhcc
Q 028256 181 VSAQTAHELICKLEVFFF 198 (211)
Q Consensus 181 ~~~~d~ee~~~~l~~~~~ 198 (211)
.-.+|++++.+.|.+...
T Consensus 316 ~~~~d~~~~~~~l~~l~~ 333 (366)
T cd03822 316 VPPGDPAALAEAIRRLLA 333 (366)
T ss_pred EcCCCHHHHHHHHHHHHc
Confidence 445678888888876543
No 125
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=51.48 E-value=1.1e+02 Score=23.75 Aligned_cols=40 Identities=15% Similarity=0.066 Sum_probs=33.5
Q ss_pred HHHHHHHHHcCCeEEecCCCCChhHHHHHHHHhcCCeEEEE
Q 028256 40 IQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (211)
Q Consensus 40 ~~lG~~la~~g~~lv~GGg~~GlM~a~a~gA~~~gG~viGv 80 (211)
.-++..|-.+||.+++-|-. =-.+...+.|.+.+..+||+
T Consensus 17 niv~~~L~~~GfeVidLG~~-v~~e~~v~aa~~~~adiVgl 56 (128)
T cd02072 17 KILDHAFTEAGFNVVNLGVL-SPQEEFIDAAIETDADAILV 56 (128)
T ss_pred HHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEE
Confidence 44566777899999999854 56799999999999999999
No 126
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=51.44 E-value=19 Score=31.12 Aligned_cols=40 Identities=13% Similarity=0.049 Sum_probs=29.8
Q ss_pred hhhcCcceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCe
Q 028256 13 ALKSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNID 52 (211)
Q Consensus 13 ~~~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~ 52 (211)
++..+.++|+|||||=.+..--+...|+++.+.+.-....
T Consensus 16 ~~~~~~~~IgifGGSFdPiH~GHl~ia~~~~~~l~ld~v~ 55 (243)
T PRK06973 16 PPLARPRRIGILGGTFDPIHDGHLALARRFADVLDLTELV 55 (243)
T ss_pred CCCCCCceEEEECCCCCCCcHHHHHHHHHHHHHcCCCEEE
Confidence 3445667899999999888888888888888877643333
No 127
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=51.15 E-value=79 Score=28.02 Aligned_cols=60 Identities=23% Similarity=0.355 Sum_probs=33.5
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCe------------------------------EEecCCCCChhHHH
Q 028256 17 RFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNID------------------------------LVYGGGSIGLMGLV 66 (211)
Q Consensus 17 ~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~------------------------------lv~GGg~~GlM~a~ 66 (211)
.+++|+|+. +.. .+.-.+.++++.++|.++|+. +++-||. |.+--+
T Consensus 3 ~~~~v~iv~--~~~-k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGD-Gt~l~~ 78 (295)
T PRK01231 3 SFRNIGLIG--RLG-SSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIVVGGD-GSLLGA 78 (295)
T ss_pred CCCEEEEEe--cCC-CHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEEEeCc-HHHHHH
Confidence 466788883 222 244445666676666544332 3334445 765555
Q ss_pred HHHHHhcCCeEEEE
Q 028256 67 SQAVYDGGRHVLGV 80 (211)
Q Consensus 67 a~gA~~~gG~viGv 80 (211)
++.+...+-.++||
T Consensus 79 ~~~~~~~~~Pvlgi 92 (295)
T PRK01231 79 ARALARHNVPVLGI 92 (295)
T ss_pred HHHhcCCCCCEEEE
Confidence 55555556677887
No 128
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=50.88 E-value=1.8e+02 Score=25.75 Aligned_cols=98 Identities=16% Similarity=0.131 Sum_probs=57.5
Q ss_pred CCHHHHHHHHHHHHHHHHcCCeE-----EecCCCCCh------------hHHHHHHHHhcCCeEEEEecCcCCCCCCCCC
Q 028256 31 KSPSYQLAAIQLGKQLVERNIDL-----VYGGGSIGL------------MGLVSQAVYDGGRHVLGVIPKTLMPREITGD 93 (211)
Q Consensus 31 ~~~~~~~~A~~lG~~la~~g~~l-----v~GGg~~Gl------------M~a~a~gA~~~gG~viGv~P~~~~~~e~~~~ 93 (211)
+-++-.+.++++.+..-..|..| ..||...|+ .+.+.+=+.+.|-..+.|.-... +.
T Consensus 108 ~~eeNi~~T~~vv~~ah~~gv~VEaElG~i~g~ed~~~~~~~~~~~~TdP~~a~~Fv~~TgvD~LAvaiGt~--HG---- 181 (287)
T PF01116_consen 108 PFEENIAITREVVEYAHAYGVSVEAELGHIGGKEDGIESEEETESLYTDPEEAKEFVEETGVDALAVAIGTA--HG---- 181 (287)
T ss_dssp -HHHHHHHHHHHHHHHHHTT-EEEEEESBSSSSCTTCSSSTT-TTCSSSHHHHHHHHHHHTTSEEEE-SSSB--SS----
T ss_pred CHHHHHHHHHHHHHhhhhhCCEEEEEeeeeeccCCCccccccccccccCHHHHHHHHHHhCCCEEEEecCcc--cc----
Confidence 34556677888888887778776 224432232 24455555667777777622111 11
Q ss_pred CCceeeecCCH-HHHHHHHHHhc-CEEEEecCCcCcHHHHHHHH
Q 028256 94 TVGEVKAVSGM-HQRKAEMARQA-DAFIALPGGYGTLEELLEVI 135 (211)
Q Consensus 94 ~~~~~~~~~~~-~~Rk~~m~~~s-Da~IvlpGG~GTL~El~~~~ 135 (211)
.|..- ..+.+ .+|...+-+.. +.-+||-||+|+-+|-+...
T Consensus 182 ~y~~~-~~p~Ld~~~L~~I~~~~~~iPLVlHGgSG~~~e~~~~a 224 (287)
T PF01116_consen 182 MYKGG-KKPKLDFDRLKEIREAVPDIPLVLHGGSGLPDEQIRKA 224 (287)
T ss_dssp SBSSS-SSTC--HHHHHHHHHHHHTSEEEESSCTTS-HHHHHHH
T ss_pred ccCCC-CCcccCHHHHHHHHHhcCCCCEEEECCCCCCHHHHHHH
Confidence 00000 11122 67888888888 99999999999999877654
No 129
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=50.62 E-value=89 Score=23.88 Aligned_cols=14 Identities=7% Similarity=0.021 Sum_probs=6.4
Q ss_pred ceEEcCCHHHHHHH
Q 028256 179 IIVSAQTAHELICK 192 (211)
Q Consensus 179 ~i~~~~d~ee~~~~ 192 (211)
.+.++.|+--+-+.
T Consensus 97 ~i~lVTs~~H~~Ra 110 (150)
T cd06259 97 SVLLVTSAYHMPRA 110 (150)
T ss_pred eEEEECCHHHHHHH
Confidence 34455555444433
No 130
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=50.44 E-value=43 Score=31.32 Aligned_cols=48 Identities=13% Similarity=0.212 Sum_probs=35.9
Q ss_pred cCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCC-----ccchhHHHHHHH
Q 028256 115 ADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD-----GYYNSLLSFIDK 165 (211)
Q Consensus 115 sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~~-----g~~~~l~~~l~~ 165 (211)
.|+|||..| .-||+|-..+++++- ..+|||||.+.- --.|...+++..
T Consensus 153 ~dGvVVtHG-TDTM~yTA~aLs~~l--~~~kPVVlTGAqrp~~~~~sDa~~NL~~A 205 (419)
T PRK04183 153 ADGVVVAHG-TDTMHYTAAALSFML--KTPVPIVFVGAQRSSDRPSSDAAMNLICA 205 (419)
T ss_pred CCeEEEecC-CchHHHHHHHHHHhc--CCCCCEEEeCCCCCCCCCCchHHHHHHHH
Confidence 799999985 799999999888755 358999998652 234666666544
No 131
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=50.41 E-value=48 Score=28.95 Aligned_cols=68 Identities=18% Similarity=0.225 Sum_probs=40.3
Q ss_pred HHHhcCEEEEecC--CcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCCCcccccceEEcCCHHH
Q 028256 111 MARQADAFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHE 188 (211)
Q Consensus 111 m~~~sDa~IvlpG--G~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee 188 (211)
+...||++|...- |+|. =+.|+++ +++|||..+.+.--..+ +.......+.-..|+++
T Consensus 275 ~~~~ad~~v~~S~~Eg~~~--~~lEAma------~G~PvI~~~~~~g~~~~------------v~~~~~G~lv~~~d~~~ 334 (372)
T cd04949 275 VYQKAQLSLLTSQSEGFGL--SLMEALS------HGLPVISYDVNYGPSEI------------IEDGENGYLVPKGDIEA 334 (372)
T ss_pred HHhhhhEEEecccccccCh--HHHHHHh------CCCCEEEecCCCCcHHH------------cccCCCceEeCCCcHHH
Confidence 4677998877642 4443 3667777 89999998765211222 11112222333358888
Q ss_pred HHHHhhhhcc
Q 028256 189 LICKLEVFFF 198 (211)
Q Consensus 189 ~~~~l~~~~~ 198 (211)
+.+.|.++..
T Consensus 335 la~~i~~ll~ 344 (372)
T cd04949 335 LAEAIIELLN 344 (372)
T ss_pred HHHHHHHHHc
Confidence 8888877653
No 132
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=50.38 E-value=1.7e+02 Score=25.51 Aligned_cols=103 Identities=14% Similarity=0.237 Sum_probs=59.2
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEE-ecCCCCChhHHHHHHHHhcCCeEEEEecCcCCCCCCCCCCC
Q 028256 17 RFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV-YGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTV 95 (211)
Q Consensus 17 ~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv-~GGg~~GlM~a~a~gA~~~gG~viGv~P~~~~~~e~~~~~~ 95 (211)
..-++=|.+....-.++. ....+-++.|++.|+.++ |-.- -+ ..++...+.|-..+ .|-. .+... ...+
T Consensus 92 ~~iKlEVi~d~~~Llpd~--~~tv~aa~~L~~~Gf~vlpyc~d--d~--~~ar~l~~~G~~~v--mPlg-~pIGs-g~Gi 161 (248)
T cd04728 92 DWIKLEVIGDDKTLLPDP--IETLKAAEILVKEGFTVLPYCTD--DP--VLAKRLEDAGCAAV--MPLG-SPIGS-GQGL 161 (248)
T ss_pred CeEEEEEecCccccccCH--HHHHHHHHHHHHCCCEEEEEeCC--CH--HHHHHHHHcCCCEe--CCCC-cCCCC-CCCC
Confidence 344667776544332222 234566778888899888 6653 23 33444555565554 3311 11110 1111
Q ss_pred ceeeecCCHHHHHHHHHHhcCEEEEecCCcCcHHHHHHHHH
Q 028256 96 GEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVIT 136 (211)
Q Consensus 96 ~~~~~~~~~~~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~ 136 (211)
.+ .+.-+.+.+..+.-|+..||+||.+++..++.
T Consensus 162 ------~~-~~~I~~I~e~~~vpVI~egGI~tpeda~~Ame 195 (248)
T cd04728 162 ------LN-PYNLRIIIERADVPVIVDAGIGTPSDAAQAME 195 (248)
T ss_pred ------CC-HHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHH
Confidence 11 33334566667899999999999999998876
No 133
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=50.21 E-value=84 Score=27.42 Aligned_cols=40 Identities=30% Similarity=0.649 Sum_probs=26.1
Q ss_pred cHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHH-----HHHHHHHcC
Q 028256 127 TLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLS-----FIDKAVDEG 170 (211)
Q Consensus 127 TL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~-----~l~~~~~~g 170 (211)
|++.+++.+.-.. .....|++|+. ||+++.. |++.+.+.|
T Consensus 75 ~~~~~~~~~~~~r-~~~~~p~vlm~---Y~N~i~~~G~e~F~~~~~~aG 119 (263)
T CHL00200 75 NLNKILSILSEVN-GEIKAPIVIFT---YYNPVLHYGINKFIKKISQAG 119 (263)
T ss_pred CHHHHHHHHHHHh-cCCCCCEEEEe---cccHHHHhCHHHHHHHHHHcC
Confidence 5667777665433 23567988774 8887666 567776655
No 134
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=50.15 E-value=62 Score=25.14 Aligned_cols=45 Identities=16% Similarity=0.150 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHcCCeEEecCCCCChhHHHHHHHHhcCCeEEEE
Q 028256 35 YQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (211)
Q Consensus 35 ~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~a~gA~~~gG~viGv 80 (211)
+-..+.=+...|...||.+++-|.. =-.+.+.+.|.+.+..+||+
T Consensus 15 Hd~g~~iv~~~l~~~GfeVi~lg~~-~s~e~~v~aa~e~~adii~i 59 (132)
T TIGR00640 15 HDRGAKVIATAYADLGFDVDVGPLF-QTPEEIARQAVEADVHVVGV 59 (132)
T ss_pred cHHHHHHHHHHHHhCCcEEEECCCC-CCHHHHHHHHHHcCCCEEEE
Confidence 3344556677788899999999976 56788899999999999999
No 135
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=50.10 E-value=71 Score=27.23 Aligned_cols=67 Identities=18% Similarity=0.235 Sum_probs=41.5
Q ss_pred HHHHHHhcCEEEEec---CCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCCCcccccceEEcC
Q 028256 108 KAEMARQADAFIALP---GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQ 184 (211)
Q Consensus 108 k~~m~~~sDa~Ivlp---GG~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~ 184 (211)
...++..||++|... .|+|+ =++|+++ .++|+|..+..+ ..+++. ++ ....+.-.+
T Consensus 257 ~~~~l~~ad~~i~ps~~~e~~~~--~l~EA~a------~G~PvI~~~~~~-~~e~i~-------~~-----~~g~~~~~~ 315 (355)
T cd03819 257 MPAAYALADIVVSASTEPEAFGR--TAVEAQA------MGRPVIASDHGG-ARETVR-------PG-----ETGLLVPPG 315 (355)
T ss_pred HHHHHHhCCEEEecCCCCCCCch--HHHHHHh------cCCCEEEcCCCC-cHHHHh-------CC-----CceEEeCCC
Confidence 345677899877643 34553 4667777 799999987654 333322 11 122344467
Q ss_pred CHHHHHHHhhh
Q 028256 185 TAHELICKLEV 195 (211)
Q Consensus 185 d~ee~~~~l~~ 195 (211)
|++++.+.|..
T Consensus 316 ~~~~l~~~i~~ 326 (355)
T cd03819 316 DAEALAQALDQ 326 (355)
T ss_pred CHHHHHHHHHH
Confidence 88888888854
No 136
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=49.73 E-value=44 Score=28.88 Aligned_cols=38 Identities=24% Similarity=0.417 Sum_probs=26.0
Q ss_pred HHHcCC-eEEecCCCCChhHHHHHHHHhcC-CeEEEEecCc
Q 028256 46 LVERNI-DLVYGGGSIGLMGLVSQAVYDGG-RHVLGVIPKT 84 (211)
Q Consensus 46 la~~g~-~lv~GGg~~GlM~a~a~gA~~~g-G~viGv~P~~ 84 (211)
.++.++ .||.-||. |....++.+..... ...+|++|..
T Consensus 53 ~~~~~~d~ivv~GGD-GTl~~v~~~l~~~~~~~~lgiiP~G 92 (293)
T TIGR00147 53 ARKFGVDTVIAGGGD-GTINEVVNALIQLDDIPALGILPLG 92 (293)
T ss_pred HHhcCCCEEEEECCC-ChHHHHHHHHhcCCCCCcEEEEcCc
Confidence 344443 45555666 99999999987743 3589999843
No 137
>PRK09271 flavodoxin; Provisional
Probab=49.70 E-value=23 Score=28.01 Aligned_cols=31 Identities=16% Similarity=0.220 Sum_probs=21.2
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeE
Q 028256 20 RVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDL 53 (211)
Q Consensus 20 ~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~l 53 (211)
+|.|+.+|..++.. +.|+.+++.|.+.|+.+
T Consensus 2 kv~IvY~S~tGnTe---~~A~~ia~~l~~~g~~v 32 (160)
T PRK09271 2 RILLAYASLSGNTR---EVAREIEERCEEAGHEV 32 (160)
T ss_pred eEEEEEEcCCchHH---HHHHHHHHHHHhCCCee
Confidence 56666677777533 56777888877777654
No 138
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=49.56 E-value=79 Score=28.24 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=16.3
Q ss_pred EecCCCCChhHHHHHHHHhcCCeEEEE
Q 028256 54 VYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (211)
Q Consensus 54 v~GGg~~GlM~a~a~gA~~~gG~viGv 80 (211)
+.|| . |.|=-+++-+...+-.++||
T Consensus 74 ~iGG-D-GTlL~aar~~~~~~iPilGI 98 (305)
T PRK02649 74 VLGG-D-GTVLSAARQLAPCGIPLLTI 98 (305)
T ss_pred EEeC-c-HHHHHHHHHhcCCCCcEEEE
Confidence 4444 5 77766666666667788887
No 139
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=49.46 E-value=70 Score=28.28 Aligned_cols=57 Identities=21% Similarity=0.334 Sum_probs=37.5
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC----------------------------CeEEecCCCCChhHHHHHH
Q 028256 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERN----------------------------IDLVYGGGSIGLMGLVSQA 69 (211)
Q Consensus 18 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g----------------------------~~lv~GGg~~GlM~a~a~g 69 (211)
+++|+|+. +.. +...+.+.++.++|.++| +.++.|| . |.|=-+++-
T Consensus 10 ~~~i~ii~--~~~--~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~iGG-D-GT~L~aa~~ 83 (287)
T PRK14077 10 IKKIGLVT--RPN--VSLDKEILKLQKILSIYKVEILLEKESAEILDLPGYGLDELFKISDFLISLGG-D-GTLISLCRK 83 (287)
T ss_pred CCEEEEEe--CCc--HHHHHHHHHHHHHHHHCCCEEEEecchhhhhcccccchhhcccCCCEEEEECC-C-HHHHHHHHH
Confidence 66799994 333 255677888888886554 2334454 5 887666666
Q ss_pred HHhcCCeEEEE
Q 028256 70 VYDGGRHVLGV 80 (211)
Q Consensus 70 A~~~gG~viGv 80 (211)
+...+-.++||
T Consensus 84 ~~~~~~PilGI 94 (287)
T PRK14077 84 AAEYDKFVLGI 94 (287)
T ss_pred hcCCCCcEEEE
Confidence 66667788887
No 140
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=49.21 E-value=1.9e+02 Score=25.62 Aligned_cols=99 Identities=12% Similarity=0.018 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHHHHHHHcCCeE-----EecCCCCC---------hhHHHHHHHHhcCCeEEEEecCcCCCCCCCCCCCce
Q 028256 32 SPSYQLAAIQLGKQLVERNIDL-----VYGGGSIG---------LMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGE 97 (211)
Q Consensus 32 ~~~~~~~A~~lG~~la~~g~~l-----v~GGg~~G---------lM~a~a~gA~~~gG~viGv~P~~~~~~e~~~~~~~~ 97 (211)
.++-.+..+++.+.....|..| ..||...| =.+.+.+=+.+.|-..+.|.-.. .|-.|..
T Consensus 110 ~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt------~HG~Y~~ 183 (283)
T PRK07998 110 FEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGCDMLAVSIGN------VHGLEDI 183 (283)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccccccccCCHHHHHHHHHHhCcCeeehhccc------cccCCCC
Confidence 4455667777777777778766 22332212 12333444445554444431100 1111111
Q ss_pred eeecCCH-HHHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHhCC
Q 028256 98 VKAVSGM-HQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGI 142 (211)
Q Consensus 98 ~~~~~~~-~~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~ 142 (211)
..+ .+|.+.+.+..|.-+||-||+|+-+|-+... .+.|.
T Consensus 184 ----p~l~~~~l~~I~~~~~vPLVlHGgSG~~~e~~~~a--i~~Gi 223 (283)
T PRK07998 184 ----PRIDIPLLKRIAEVSPVPLVIHGGSGIPPEILRSF--VNYKV 223 (283)
T ss_pred ----CCcCHHHHHHHHhhCCCCEEEeCCCCCCHHHHHHH--HHcCC
Confidence 222 5788888888899999999999998877533 34554
No 141
>PRK10343 RNA-binding protein YhbY; Provisional
Probab=49.11 E-value=87 Score=23.31 Aligned_cols=55 Identities=18% Similarity=0.100 Sum_probs=35.7
Q ss_pred CCCCcEEEEeCCccchhHHHHHHH-HHHcCCCCcccccceEEcCCHHHHHHHhhhhcc
Q 028256 142 IHDKPVGLLNVDGYYNSLLSFIDK-AVDEGFIAPAARYIIVSAQTAHELICKLEVFFF 198 (211)
Q Consensus 142 ~~~kPiill~~~g~~~~l~~~l~~-~~~~g~i~~~~~~~i~~~~d~ee~~~~l~~~~~ 198 (211)
.+-+|++.++.+|.-+.+++.++. +.....|.-+-.. ..-+|..|+.+.|++...
T Consensus 16 h~l~Pvv~IGk~Glt~~vi~ei~~aL~~hELIKvkv~~--~~~~~~~e~~~~i~~~~~ 71 (97)
T PRK10343 16 HPLKPVVLLGSNGLTEGVLAEIEQALEHHELIKVKIAT--EDRETKTLIVEAIVRETG 71 (97)
T ss_pred CCCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEecC--CChhHHHHHHHHHHHHHC
Confidence 345899999999999999999865 5555555422111 122345667777766543
No 142
>PRK00089 era GTPase Era; Reviewed
Probab=49.10 E-value=1.3e+02 Score=25.76 Aligned_cols=89 Identities=15% Similarity=0.123 Sum_probs=45.9
Q ss_pred HHHhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEE-eCCccc---hhHHHHHHHHHHc-CCCCcccccceEE---
Q 028256 111 MARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLL-NVDGYY---NSLLSFIDKAVDE-GFIAPAARYIIVS--- 182 (211)
Q Consensus 111 m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill-~~~g~~---~~l~~~l~~~~~~-g~i~~~~~~~i~~--- 182 (211)
.+..+|+++++--....+.+... +.+..+...++|++++ |.-+.- +.+...++.+.+. ++ .+.+.+
T Consensus 81 ~~~~~D~il~vvd~~~~~~~~~~-~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~-----~~i~~iSA~ 154 (292)
T PRK00089 81 SLKDVDLVLFVVDADEKIGPGDE-FILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSELMDF-----AEIVPISAL 154 (292)
T ss_pred HHhcCCEEEEEEeCCCCCChhHH-HHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCC-----CeEEEecCC
Confidence 34678987666544332222111 1122222345787765 654332 3344445554431 11 111211
Q ss_pred -cCCHHHHHHHhhhhccCceeEEe
Q 028256 183 -AQTAHELICKLEVFFFFFFWLFS 205 (211)
Q Consensus 183 -~~d~ee~~~~l~~~~~~~~~~~~ 205 (211)
-...+++++.|.++.++..|.|.
T Consensus 155 ~~~gv~~L~~~L~~~l~~~~~~y~ 178 (292)
T PRK00089 155 KGDNVDELLDVIAKYLPEGPPYYP 178 (292)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCCC
Confidence 24689999999999887777765
No 143
>TIGR00060 L18_bact ribosomal protein L18, bacterial type. The archaeal and eukaryotic type rpL18 is not detectable under this model.
Probab=49.01 E-value=47 Score=25.52 Aligned_cols=39 Identities=31% Similarity=0.504 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHH----cCCeE-Eec-CC--CCChhHHHHHHHHhcC
Q 028256 36 QLAAIQLGKQLVE----RNIDL-VYG-GG--SIGLMGLVSQAVYDGG 74 (211)
Q Consensus 36 ~~~A~~lG~~la~----~g~~l-v~G-Gg--~~GlM~a~a~gA~~~g 74 (211)
.+.|+.+|+.||+ .|+.= ++- || +-|-+.|++++|.++|
T Consensus 65 ~~aA~~vG~~la~ra~~~gi~~vvfDrgg~~YhGrv~A~a~~aRe~G 111 (114)
T TIGR00060 65 KDAAKKVGKLVAERLKEKGIKDVVFDRGGYKYHGRVAALAEAAREAG 111 (114)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCCCCcchHHHHHHHHHHHHhC
Confidence 5778888888886 45432 221 22 2688999999999987
No 144
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=48.95 E-value=78 Score=26.12 Aligned_cols=69 Identities=20% Similarity=0.313 Sum_probs=39.3
Q ss_pred HHHHHHhcCEEEEec--CCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCCCcccccceEEcCC
Q 028256 108 KAEMARQADAFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQT 185 (211)
Q Consensus 108 k~~m~~~sDa~Ivlp--GG~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d 185 (211)
...++..||++|... .|.|+ =++|+++ .++||+..+..++ .+++. ......+.-.+|
T Consensus 269 ~~~~~~~~di~i~~~~~~~~~~--~~~Ea~~------~g~pvI~~~~~~~-~~~~~------------~~~~g~~~~~~~ 327 (374)
T cd03801 269 LPALYAAADVFVLPSLYEGFGL--VLLEAMA------AGLPVVASDVGGI-PEVVE------------DGETGLLVPPGD 327 (374)
T ss_pred HHHHHHhcCEEEecchhccccc--hHHHHHH------cCCcEEEeCCCCh-hHHhc------------CCcceEEeCCCC
Confidence 444667899877543 23333 3556666 7899998876433 22211 112223444455
Q ss_pred HHHHHHHhhhhc
Q 028256 186 AHELICKLEVFF 197 (211)
Q Consensus 186 ~ee~~~~l~~~~ 197 (211)
++++.+.|.+..
T Consensus 328 ~~~l~~~i~~~~ 339 (374)
T cd03801 328 PEALAEAILRLL 339 (374)
T ss_pred HHHHHHHHHHHH
Confidence 888888887753
No 145
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=48.68 E-value=1.7e+02 Score=26.71 Aligned_cols=112 Identities=20% Similarity=0.278 Sum_probs=62.7
Q ss_pred cchHHHHHHHhhhhcCcceEEE--EeCCCCCC-CHHHHHHHHHHHHHHHH--cCCeE--E-e--cCCC-CChhHHHHHHH
Q 028256 2 ETQQQQQQAAAALKSRFKRVCV--FCGSSPGK-SPSYQLAAIQLGKQLVE--RNIDL--V-Y--GGGS-IGLMGLVSQAV 70 (211)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~I~V--fggs~~~~-~~~~~~~A~~lG~~la~--~g~~l--v-~--GGg~-~GlM~a~a~gA 70 (211)
||-.|.++.... .+++ .|+- .-|-..+. +....+.|++--..+.+ .|... + . |||. .|.--.+++.|
T Consensus 44 nTD~q~L~~~~a-~~ki-~iG~~~t~GlGaGa~P~vG~~aAee~~~~I~~~l~g~dmvfitaG~GGGTGtGaaPVvakia 121 (338)
T COG0206 44 NTDAQALKSSKA-DRKI-LIGESITRGLGAGANPEVGRAAAEESIEEIEEALKGADMVFVTAGMGGGTGTGAAPVVAEIA 121 (338)
T ss_pred ccCHHHHhcccc-CeEE-EeccceeeccCCCCCcHHHHHHHHHHHHHHHHHhccCCeEEEEeeecCCccccccHHHHHHH
Confidence 455666665542 2222 3331 11223333 44556667766666655 45552 2 1 3433 35577889999
Q ss_pred HhcCCeEEEEecCcCCCCCCCCCCCceeeecCCHHHHHHHHHHhcCEEEEecC
Q 028256 71 YDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPG 123 (211)
Q Consensus 71 ~~~gG~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~Rk~~m~~~sDa~IvlpG 123 (211)
.+.|-.+++|..-.+ ..|. . .....-......|.+.+|-+|++|-
T Consensus 122 ke~g~ltvavvt~Pf-~~EG--~-----~r~~~A~~gi~~L~~~~DtlIvi~N 166 (338)
T COG0206 122 KELGALTVAVVTLPF-SFEG--S-----PRMENAEEGIEELREVVDTLIVIPN 166 (338)
T ss_pred HhcCCcEEEEEEecc-hhcC--c-----hHHHHHHHHHHHHHHhCCcEEEEec
Confidence 999999999842211 1111 0 0111225667788889999999984
No 146
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=48.06 E-value=42 Score=28.61 Aligned_cols=52 Identities=12% Similarity=0.116 Sum_probs=35.1
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEecCCCCChhHHHHHHHHhcCCeEEEE
Q 028256 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (211)
Q Consensus 18 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~a~gA~~~gG~viGv 80 (211)
||+++++|-.+. -..|++.+++.||.++.|+. .--++....+...+..++|-
T Consensus 1 m~~~~i~GtGni---------G~alA~~~a~ag~eV~igs~--r~~~~~~a~a~~l~~~i~~~ 52 (211)
T COG2085 1 MMIIAIIGTGNI---------GSALALRLAKAGHEVIIGSS--RGPKALAAAAAALGPLITGG 52 (211)
T ss_pred CcEEEEeccChH---------HHHHHHHHHhCCCeEEEecC--CChhHHHHHHHhhccccccC
Confidence 567888753333 24689999999999999974 45566655565555554443
No 147
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=47.79 E-value=1.2e+02 Score=26.03 Aligned_cols=88 Identities=17% Similarity=0.064 Sum_probs=46.0
Q ss_pred HHHhcCEEEEe-cCCcCcHHHHHHHHHHHHhCCCCCcEEEE-eCCccc--hhHHHHHHHHHHcCCCCcccccce----EE
Q 028256 111 MARQADAFIAL-PGGYGTLEELLEVITWAQLGIHDKPVGLL-NVDGYY--NSLLSFIDKAVDEGFIAPAARYII----VS 182 (211)
Q Consensus 111 m~~~sDa~Ivl-pGG~GTL~El~~~~~~~~lg~~~kPiill-~~~g~~--~~l~~~l~~~~~~g~i~~~~~~~i----~~ 182 (211)
.++.+|+++++ ...-+...+ .. .+..+...++|++++ |.-+.. +.+...++.+....-.. ..+ ..
T Consensus 76 ~l~~aDvvl~VvD~~~~~~~~-~~--i~~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~----~v~~iSA~~ 148 (270)
T TIGR00436 76 AIGGVDLILFVVDSDQWNGDG-EF--VLTKLQNLKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFK----DIVPISALT 148 (270)
T ss_pred HHhhCCEEEEEEECCCCCchH-HH--HHHHHHhcCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCC----ceEEEecCC
Confidence 35779986665 333333332 11 122333356887765 654332 22333333333211110 111 12
Q ss_pred cCCHHHHHHHhhhhccCceeEEe
Q 028256 183 AQTAHELICKLEVFFFFFFWLFS 205 (211)
Q Consensus 183 ~~d~ee~~~~l~~~~~~~~~~~~ 205 (211)
-+..+++.+.|.++.++..|.|.
T Consensus 149 g~gi~~L~~~l~~~l~~~~~~~~ 171 (270)
T TIGR00436 149 GDNTSFLAAFIEVHLPEGPFRYP 171 (270)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCC
Confidence 36789999999999988888774
No 148
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=47.76 E-value=1e+02 Score=26.26 Aligned_cols=55 Identities=20% Similarity=0.259 Sum_probs=37.6
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEecCCCCChhHHHHHHHHhcCCeEEEEe
Q 028256 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVI 81 (211)
Q Consensus 19 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~a~gA~~~gG~viGv~ 81 (211)
+...++.|+.. |+ ..|+++++.|-.+|..+|+..+ .| ..+.+.|.+.|..+||+-
T Consensus 153 ~v~~~~~g~~~--D~---~~a~~~a~~l~~~G~DvI~~~~-~~--~g~~~aa~~~g~~~IG~d 207 (258)
T cd06353 153 TVKVIWTGSWF--DP---AKEKEAALALIDQGADVIYQHT-DS--PGVIQAAEEKGVYAIGYV 207 (258)
T ss_pred EEEEEEecCCC--Cc---HHHHHHHHHHHHCCCcEEEecC-CC--hHHHHHHHHhCCEEEeec
Confidence 34455544433 33 4567788888889999999885 24 245567778899999983
No 149
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=47.53 E-value=96 Score=27.54 Aligned_cols=29 Identities=21% Similarity=0.378 Sum_probs=18.5
Q ss_pred CCeEEecCCCCChhHHHHHHHHhcCCeEEEE
Q 028256 50 NIDLVYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (211)
Q Consensus 50 g~~lv~GGg~~GlM~a~a~gA~~~gG~viGv 80 (211)
...++.| |. |.+-.+++.....+-.++||
T Consensus 59 d~vi~~G-GD-GT~l~~~~~~~~~~~pv~gi 87 (305)
T PRK02645 59 DLAIVLG-GD-GTVLAAARHLAPHDIPILSV 87 (305)
T ss_pred CEEEEEC-Cc-HHHHHHHHHhccCCCCEEEE
Confidence 4444544 56 88888888776655555555
No 150
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=47.24 E-value=2.3e+02 Score=25.93 Aligned_cols=35 Identities=40% Similarity=0.393 Sum_probs=23.0
Q ss_pred HHHHHhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCc
Q 028256 109 AEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDG 154 (211)
Q Consensus 109 ~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~~g 154 (211)
...+..||++|.-.| .-| .|+. . .++|++++-..+
T Consensus 291 ~~~l~~ADlvI~rSG-t~T-~E~a---~------lg~P~Ilip~~~ 325 (396)
T TIGR03492 291 AEILHWADLGIAMAG-TAT-EQAV---G------LGKPVIQLPGKG 325 (396)
T ss_pred HHHHHhCCEEEECcC-HHH-HHHH---H------hCCCEEEEeCCC
Confidence 356788998887755 344 4433 3 589999986333
No 151
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=46.98 E-value=80 Score=27.98 Aligned_cols=71 Identities=17% Similarity=0.247 Sum_probs=41.9
Q ss_pred HHHHHHHHhcCEEEEe--cCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCCCcccccceEEc
Q 028256 106 QRKAEMARQADAFIAL--PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSA 183 (211)
Q Consensus 106 ~Rk~~m~~~sDa~Ivl--pGG~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~ 183 (211)
+....++..||++|.- ..|+|. =+.|+++ .++||+..+..| ...++ .++ ....+.-.
T Consensus 294 ~~~~~~l~~ad~~v~ps~~E~~g~--~~lEAma------~G~Pvi~~~~~~-~~e~i-------~~~-----~~g~~~~~ 352 (405)
T TIGR03449 294 EELVHVYRAADVVAVPSYNESFGL--VAMEAQA------CGTPVVAARVGG-LPVAV-------ADG-----ETGLLVDG 352 (405)
T ss_pred HHHHHHHHhCCEEEECCCCCCcCh--HHHHHHH------cCCCEEEecCCC-cHhhh-------ccC-----CceEECCC
Confidence 4455678899988764 355665 3667776 789999987654 22221 111 11112223
Q ss_pred CCHHHHHHHhhhhc
Q 028256 184 QTAHELICKLEVFF 197 (211)
Q Consensus 184 ~d~ee~~~~l~~~~ 197 (211)
+|++++.+.|.++.
T Consensus 353 ~d~~~la~~i~~~l 366 (405)
T TIGR03449 353 HDPADWADALARLL 366 (405)
T ss_pred CCHHHHHHHHHHHH
Confidence 57888777776654
No 152
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6. These are fungal Neuropathy Target Esterase (NTE), commonly referred to as NTE1. Patatin-like phospholipase. NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This family includes NTE1 from fungi.
Probab=46.46 E-value=14 Score=32.28 Aligned_cols=30 Identities=33% Similarity=0.671 Sum_probs=23.9
Q ss_pred HHHHHHHHcCCeEEecCCCCChhHHHHHHHHh
Q 028256 41 QLGKQLVERNIDLVYGGGSIGLMGLVSQAVYD 72 (211)
Q Consensus 41 ~lG~~la~~g~~lv~GGg~~GlM~a~a~gA~~ 72 (211)
+|+|.|+.+.+.||.||| |.=++++-|+++
T Consensus 1 rlar~l~g~~igLVL~GG--GaRG~ahiGVL~ 30 (269)
T cd07227 1 RLARRLCGQAIGLVLGGG--GARGISHIGILQ 30 (269)
T ss_pred ChhhHhcCCCEEEEECCc--HHHHHHHHHHHH
Confidence 378888888899998886 777777777765
No 153
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=46.46 E-value=53 Score=29.49 Aligned_cols=29 Identities=31% Similarity=0.343 Sum_probs=20.1
Q ss_pred CCeEEecCCCCChhHHHHHHHHhcCC-eEEEE
Q 028256 50 NIDLVYGGGSIGLMGLVSQAVYDGGR-HVLGV 80 (211)
Q Consensus 50 g~~lv~GGg~~GlM~a~a~gA~~~gG-~viGv 80 (211)
+..+|.|.|+.|||- ...|...|. ++|.+
T Consensus 170 ~~V~V~GaGpIGLla--~~~a~~~Ga~~Viv~ 199 (350)
T COG1063 170 GTVVVVGAGPIGLLA--IALAKLLGASVVIVV 199 (350)
T ss_pred CEEEEECCCHHHHHH--HHHHHHcCCceEEEe
Confidence 358899999999997 444556664 44444
No 154
>PRK12359 flavodoxin FldB; Provisional
Probab=46.43 E-value=53 Score=26.76 Aligned_cols=19 Identities=16% Similarity=0.373 Sum_probs=9.3
Q ss_pred HHHHHHHhcCCeEEEEecC
Q 028256 65 LVSQAVYDGGRHVLGVIPK 83 (211)
Q Consensus 65 a~a~gA~~~gG~viGv~P~ 83 (211)
...+...+.|+.++|-.|.
T Consensus 103 ~l~~~l~~~Ga~ivG~~~~ 121 (172)
T PRK12359 103 MLHDKLAPKGVKFVGYWPT 121 (172)
T ss_pred HHHHHHHhCCCeEEeeEeC
Confidence 3444444455555655543
No 155
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=46.33 E-value=46 Score=23.20 Aligned_cols=33 Identities=39% Similarity=0.674 Sum_probs=23.8
Q ss_pred CEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCc
Q 028256 116 DAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDG 154 (211)
Q Consensus 116 Da~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~~g 154 (211)
--+|.+| +|++|+..+.+ .++|.. |--+++.+|
T Consensus 19 GKvi~lP---~SleeLl~ia~-~kfg~~--~~~v~~~dg 51 (69)
T PF11834_consen 19 GKVIWLP---DSLEELLKIAS-EKFGFS--ATKVLNEDG 51 (69)
T ss_pred CEEEEcC---ccHHHHHHHHH-HHhCCC--ceEEEcCCC
Confidence 3488899 69999998765 677764 555666654
No 156
>PRK05568 flavodoxin; Provisional
Probab=46.30 E-value=38 Score=25.77 Aligned_cols=32 Identities=16% Similarity=0.235 Sum_probs=18.5
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCe
Q 028256 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNID 52 (211)
Q Consensus 18 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~ 52 (211)
|++|.|+..|..++.. +.|+.+++.+.+.|+.
T Consensus 1 m~~~~IvY~S~~GnT~---~~a~~i~~~~~~~g~~ 32 (142)
T PRK05568 1 MKKINIIYWSGTGNTE---AMANLIAEGAKENGAE 32 (142)
T ss_pred CCeEEEEEECCCchHH---HHHHHHHHHHHHCCCe
Confidence 3456666667766443 4466666666555554
No 157
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=46.12 E-value=45 Score=28.36 Aligned_cols=40 Identities=18% Similarity=0.151 Sum_probs=23.0
Q ss_pred hhhcCcceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeE
Q 028256 13 ALKSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDL 53 (211)
Q Consensus 13 ~~~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~l 53 (211)
+-++++++|.+++||.+. ++.-...|+.+.+.+...|+.+
T Consensus 21 ~~~~~~~kI~~I~GSlR~-~S~n~~la~~~~~~~~~~g~~v 60 (219)
T TIGR02690 21 THKPHIPRILLLYGSLRE-RSYSRLLAEEAARLLGCEGRET 60 (219)
T ss_pred CCCCCCCEEEEEECCCCC-cchHHHHHHHHHHHHhhcCCEE
Confidence 345567788888887765 3333345555555554444443
No 158
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=46.09 E-value=65 Score=28.23 Aligned_cols=58 Identities=26% Similarity=0.328 Sum_probs=39.5
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEecCCCCChhHHHHHHHHhcCCe--EEEEec
Q 028256 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRH--VLGVIP 82 (211)
Q Consensus 19 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~a~gA~~~gG~--viGv~P 82 (211)
+....|-||-. |+ ..++++++.|-.+|..+|+.-+. +.-..+.+.|.+.|.. +||+--
T Consensus 162 ~v~~~~~gs~~--D~---~~~~~~a~~li~~GaDvI~~~ag-~~~~gv~~aa~e~g~~~~~IG~d~ 221 (306)
T PF02608_consen 162 KVNVSYTGSFN--DP---AKAKEAAEALIDQGADVIFPVAG-GSGQGVIQAAKEAGVYGYVIGVDS 221 (306)
T ss_dssp EEEEEE-SSSS---H---HHHHHHHHHHHHTT-SEEEEE-C-CCHHHHHHHHHHHTHETEEEEEES
T ss_pred eEEEEEcCCcC--ch---HHHHHHHHHHhhcCCeEEEECCC-CCchHHHHHHHHcCCceEEEEecc
Confidence 34455555433 45 46788999999999999999432 5566777888888877 999843
No 159
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=45.86 E-value=58 Score=27.15 Aligned_cols=66 Identities=21% Similarity=0.313 Sum_probs=37.8
Q ss_pred HHHHhcCEEEEecCCc-CcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCCCcccccceEEcCCHHH
Q 028256 110 EMARQADAFIALPGGY-GTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHE 188 (211)
Q Consensus 110 ~m~~~sDa~IvlpGG~-GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee 188 (211)
.++..||++|. |... |.-.=+.|+++ .++||+..+..+. ..++ ++ .| .+.-.+|+++
T Consensus 264 ~~~~~adi~v~-ps~~e~~~~~~~Ea~a------~g~PvI~~~~~~~-~e~~---~~---~g--------~~~~~~~~~~ 321 (365)
T cd03807 264 ALLNALDVFVL-SSLSEGFPNVLLEAMA------CGLPVVATDVGDN-AELV---GD---TG--------FLVPPGDPEA 321 (365)
T ss_pred HHHHhCCEEEe-CCccccCCcHHHHHHh------cCCCEEEcCCCCh-HHHh---hc---CC--------EEeCCCCHHH
Confidence 46788997664 4322 11123556666 7899998766432 2222 11 12 2344568888
Q ss_pred HHHHhhhhc
Q 028256 189 LICKLEVFF 197 (211)
Q Consensus 189 ~~~~l~~~~ 197 (211)
+.+.|.+..
T Consensus 322 l~~~i~~l~ 330 (365)
T cd03807 322 LAEAIEALL 330 (365)
T ss_pred HHHHHHHHH
Confidence 888777654
No 160
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=45.79 E-value=85 Score=28.15 Aligned_cols=71 Identities=15% Similarity=0.199 Sum_probs=41.8
Q ss_pred HHHHHHHHhcCEEEEe---cCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCCCcccccceE-
Q 028256 106 QRKAEMARQADAFIAL---PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIV- 181 (211)
Q Consensus 106 ~Rk~~m~~~sDa~Ivl---pGG~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~- 181 (211)
+....+...||++|+- ..|+|. =+.|+++ .++||+..+.+|. .+++. ++ ....+.
T Consensus 268 ~~l~~~~~~aDv~v~pS~~~E~f~~--~~lEAma------~G~PVI~s~~gg~-~Eiv~-------~~-----~~G~~l~ 326 (380)
T PRK15484 268 EKMHNYYPLADLVVVPSQVEEAFCM--VAVEAMA------AGKPVLASTKGGI-TEFVL-------EG-----ITGYHLA 326 (380)
T ss_pred HHHHHHHHhCCEEEeCCCCcccccc--HHHHHHH------cCCCEEEeCCCCc-Hhhcc-------cC-----CceEEEe
Confidence 3445567899998863 245554 2567777 7999999877543 22211 11 111112
Q ss_pred EcCCHHHHHHHhhhhc
Q 028256 182 SAQTAHELICKLEVFF 197 (211)
Q Consensus 182 ~~~d~ee~~~~l~~~~ 197 (211)
-..|++++.+.|.+..
T Consensus 327 ~~~d~~~la~~I~~ll 342 (380)
T PRK15484 327 EPMTSDSIISDINRTL 342 (380)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 2457888877776654
No 161
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=45.76 E-value=2.2e+02 Score=25.26 Aligned_cols=100 Identities=15% Similarity=0.100 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHHHHHcCCeE-----EecCCCCCh-----------hHHHHHHHHhcCCeEEEEecCcCCCCCCCCCCC
Q 028256 32 SPSYQLAAIQLGKQLVERNIDL-----VYGGGSIGL-----------MGLVSQAVYDGGRHVLGVIPKTLMPREITGDTV 95 (211)
Q Consensus 32 ~~~~~~~A~~lG~~la~~g~~l-----v~GGg~~Gl-----------M~a~a~gA~~~gG~viGv~P~~~~~~e~~~~~~ 95 (211)
-++-.+.++++.+..-..|..| .-||...|+ .+.+.+=+.+.|-..+.|.-... |-.|
T Consensus 110 ~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~------HG~y 183 (284)
T PRK09195 110 FAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVEATGIDSLAVAIGTA------HGMY 183 (284)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCcccccccccCCCHHHHHHHHHHHCcCEEeeccCcc------cccc
Confidence 4555567777777777777766 224443342 22333334444544444411100 0000
Q ss_pred ceeeecCCH-HHHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHhCC
Q 028256 96 GEVKAVSGM-HQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGI 142 (211)
Q Consensus 96 ~~~~~~~~~-~~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~ 142 (211)
.. .+.+ ++|.+-+-+..|.-+||-||+|+-+|-+... .+.|.
T Consensus 184 ~~---~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~a--i~~Gi 226 (284)
T PRK09195 184 KG---EPKLDFDRLENIRQWVNIPLVLHGASGLPTKDIQQT--IKLGI 226 (284)
T ss_pred CC---CCcCCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHH--HHcCC
Confidence 00 0111 5677777777799999999999999887544 34454
No 162
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=45.72 E-value=2.2e+02 Score=25.24 Aligned_cols=101 Identities=18% Similarity=0.132 Sum_probs=57.1
Q ss_pred CCHHHHHHHHHHHHHHHHcCCeE-----EecCCCCCh-----------hHHHHHHHHhcCCeEEEEecCcCCCCCCCCCC
Q 028256 31 KSPSYQLAAIQLGKQLVERNIDL-----VYGGGSIGL-----------MGLVSQAVYDGGRHVLGVIPKTLMPREITGDT 94 (211)
Q Consensus 31 ~~~~~~~~A~~lG~~la~~g~~l-----v~GGg~~Gl-----------M~a~a~gA~~~gG~viGv~P~~~~~~e~~~~~ 94 (211)
+-++-.+.++++.+..-+.|..| .-||...|+ .+.+.+=+.+.|-..+.|.-... |-.
T Consensus 109 p~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~------HG~ 182 (284)
T PRK12737 109 SFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERTGIDSLAVAIGTA------HGL 182 (284)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHHhCCCEEeeccCcc------ccc
Confidence 34555677788888777777776 224443342 14444444455655554411110 101
Q ss_pred CceeeecCCH-HHHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHhCC
Q 028256 95 VGEVKAVSGM-HQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGI 142 (211)
Q Consensus 95 ~~~~~~~~~~-~~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~ 142 (211)
|.. .+.+ ++|.+-+-+..|.-+||-||+|+-+|-+... .+.|.
T Consensus 183 y~~---~p~Ld~~~L~~I~~~~~iPLVlHGgSG~~~e~~~ka--i~~Gi 226 (284)
T PRK12737 183 YKG---EPKLDFERLAEIREKVSIPLVLHGASGVPDEDVKKA--ISLGI 226 (284)
T ss_pred cCC---CCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHH--HHCCC
Confidence 100 0111 4577777777788899999999999887644 34554
No 163
>PRK00654 glgA glycogen synthase; Provisional
Probab=45.54 E-value=2.5e+02 Score=25.94 Aligned_cols=72 Identities=14% Similarity=0.060 Sum_probs=41.6
Q ss_pred HHHHHhcCEEEEe--cCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCC-CcccccceEEcCC
Q 028256 109 AEMARQADAFIAL--PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFI-APAARYIIVSAQT 185 (211)
Q Consensus 109 ~~m~~~sDa~Ivl--pGG~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i-~~~~~~~i~~~~d 185 (211)
..+...||++|.- -.|.|.. +.|+++ .+.|+|+-+.+|.-+-+.. +-- .......++-.+|
T Consensus 351 ~~~~~~aDv~v~PS~~E~~gl~--~lEAma------~G~p~V~~~~gG~~e~v~~--------~~~~~~~~~G~lv~~~d 414 (466)
T PRK00654 351 HRIYAGADMFLMPSRFEPCGLT--QLYALR------YGTLPIVRRTGGLADTVID--------YNPEDGEATGFVFDDFN 414 (466)
T ss_pred HHHHhhCCEEEeCCCCCCchHH--HHHHHH------CCCCEEEeCCCCccceeec--------CCCCCCCCceEEeCCCC
Confidence 3567889988763 2456642 556665 7889988888776553321 100 0112223444568
Q ss_pred HHHHHHHhhhh
Q 028256 186 AHELICKLEVF 196 (211)
Q Consensus 186 ~ee~~~~l~~~ 196 (211)
++++.+.|.+.
T Consensus 415 ~~~la~~i~~~ 425 (466)
T PRK00654 415 AEDLLRALRRA 425 (466)
T ss_pred HHHHHHHHHHH
Confidence 88887777653
No 164
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=45.51 E-value=44 Score=25.27 Aligned_cols=32 Identities=25% Similarity=0.383 Sum_probs=23.1
Q ss_pred eEEecCCCCChhHHHHHHHHhcCC----eEEEEecCc
Q 028256 52 DLVYGGGSIGLMGLVSQAVYDGGR----HVLGVIPKT 84 (211)
Q Consensus 52 ~lv~GGg~~GlM~a~a~gA~~~gG----~viGv~P~~ 84 (211)
.||..||. |....+..+..+... ..+|++|..
T Consensus 52 ~vvv~GGD-GTi~~vvn~l~~~~~~~~~~plgiiP~G 87 (124)
T smart00046 52 RVLVCGGD-GTVGWVLNALDKRELPLPEPPVAVLPLG 87 (124)
T ss_pred EEEEEccc-cHHHHHHHHHHhcccccCCCcEEEeCCC
Confidence 55556666 998888888876654 469999853
No 165
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=45.47 E-value=2.8e+02 Score=26.43 Aligned_cols=114 Identities=18% Similarity=0.183 Sum_probs=59.0
Q ss_pred HHHHHHHHHc--CCeEEecCCCC-------ChhHHHHHHHHhcCCeEEEEecCcCCCCCCCCCCCceeeecCCHHHHHHH
Q 028256 40 IQLGKQLVER--NIDLVYGGGSI-------GLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAE 110 (211)
Q Consensus 40 ~~lG~~la~~--g~~lv~GGg~~-------GlM~a~a~gA~~~gG~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~Rk~~ 110 (211)
.++-+.|.+. |..+++=|... -..+++.++....+-++|=-......+... ...+.+.+-+.. ..+
T Consensus 285 ~~l~~fl~~~~~g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~~~~~~----p~Nv~i~~w~Pq-~~l 359 (507)
T PHA03392 285 DYLEEFLNNSTNGVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEVEAINL----PANVLTQKWFPQ-RAV 359 (507)
T ss_pred HHHHHHHhcCCCcEEEEECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCcCcccC----CCceEEecCCCH-HHH
Confidence 3455556544 45556655421 134566666656665544322211111011 123445555553 333
Q ss_pred HH-HhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCC
Q 028256 111 MA-RQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGF 171 (211)
Q Consensus 111 m~-~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~ 171 (211)
|. ..+++| |--||.||..|... +++|++.+-. ++|.... .+.+.+.|.
T Consensus 360 L~hp~v~~f-ItHGG~~s~~Eal~---------~GvP~v~iP~--~~DQ~~N-a~rv~~~G~ 408 (507)
T PHA03392 360 LKHKNVKAF-VTQGGVQSTDEAID---------ALVPMVGLPM--MGDQFYN-TNKYVELGI 408 (507)
T ss_pred hcCCCCCEE-EecCCcccHHHHHH---------cCCCEEECCC--CccHHHH-HHHHHHcCc
Confidence 32 335544 56788999887753 7999998753 5565433 445555553
No 166
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=45.31 E-value=51 Score=28.08 Aligned_cols=67 Identities=18% Similarity=0.211 Sum_probs=40.9
Q ss_pred HHHHhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCCCcccccceEEcCCHHHH
Q 028256 110 EMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHEL 189 (211)
Q Consensus 110 ~m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee~ 189 (211)
.++..||++|.-...-|.-.=++|+++ .++|++..+..+. .+++ ++ ...++-.+|++++
T Consensus 258 ~~~~~ad~~v~~s~~e~~~~~~~Ea~a------~G~PvI~~~~~~~-~e~i---~~-----------~g~~~~~~~~~~~ 316 (360)
T cd04951 258 AYYNAADLFVLSSAWEGFGLVVAEAMA------CELPVVATDAGGV-REVV---GD-----------SGLIVPISDPEAL 316 (360)
T ss_pred HHHHhhceEEecccccCCChHHHHHHH------cCCCEEEecCCCh-hhEe---cC-----------CceEeCCCCHHHH
Confidence 467889987765432222224677777 7899998776432 2221 11 2234556889888
Q ss_pred HHHhhhhc
Q 028256 190 ICKLEVFF 197 (211)
Q Consensus 190 ~~~l~~~~ 197 (211)
.+.|.+..
T Consensus 317 ~~~i~~ll 324 (360)
T cd04951 317 ANKIDEIL 324 (360)
T ss_pred HHHHHHHH
Confidence 88887764
No 167
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=45.23 E-value=1.2e+02 Score=26.41 Aligned_cols=55 Identities=22% Similarity=0.320 Sum_probs=36.7
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC---------eEEecCCCCChhHHHHHHHHh--cCCeEEEE
Q 028256 20 RVCVFCGSSPGKSPSYQLAAIQLGKQLVERNI---------DLVYGGGSIGLMGLVSQAVYD--GGRHVLGV 80 (211)
Q Consensus 20 ~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~---------~lv~GGg~~GlM~a~a~gA~~--~gG~viGv 80 (211)
+|+|+. + . ++...+.+.++.++|.++|+ .++.|| . |.|=-+++-+.. .+-.++||
T Consensus 2 ~i~Ii~--~-~-~~~~~~~~~~l~~~l~~~g~~~~~~~~Dlvi~iGG-D-GT~L~a~~~~~~~~~~iPilGI 67 (265)
T PRK04885 2 KVAIIS--N-G-DPKSKRVASKLKKYLKDFGFILDEKNPDIVISVGG-D-GTLLSAFHRYENQLDKVRFVGV 67 (265)
T ss_pred EEEEEe--C-C-CHHHHHHHHHHHHHHHHcCCccCCcCCCEEEEECC-c-HHHHHHHHHhcccCCCCeEEEE
Confidence 588882 3 2 45566788899998877664 345555 6 877666665554 46677776
No 168
>TIGR01198 pgl 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
Probab=45.06 E-value=1.5e+02 Score=25.10 Aligned_cols=78 Identities=22% Similarity=0.176 Sum_probs=43.3
Q ss_pred HHhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccc------hhHHHHH-HHHHHcCCCCcccccceEEcC
Q 028256 112 ARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYY------NSLLSFI-DKAVDEGFIAPAARYIIVSAQ 184 (211)
Q Consensus 112 ~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~~g~~------~~l~~~l-~~~~~~g~i~~~~~~~i~~~~ 184 (211)
-+...+.|+|+|| .|...+++.+.-. ...=..+.++..+.+| +....++ +.+.+..-+++ +.++..+
T Consensus 25 ~~~~~~~lalsGG-stp~~~y~~L~~~--~i~w~~v~~f~~DER~Vp~~~~~SN~~~~~~~Ll~~~~i~~---~~i~~~~ 98 (233)
T TIGR01198 25 AERGQFSLALSGG-RSPIALLEALAAQ--PLDWSRIHLFLGDERYVPLDHADSNTGLAREALLDRVAIPA---SNIHPMP 98 (233)
T ss_pred HhcCcEEEEECCC-ccHHHHHHHHhhC--CCCcceEEEEEecccccCCCCccchHHHHHHHHhccCCCCh---hheeeCC
Confidence 3457789999999 4777788777632 2222556677777676 2233334 23443322332 2333332
Q ss_pred ----CHHHHHHHhhh
Q 028256 185 ----TAHELICKLEV 195 (211)
Q Consensus 185 ----d~ee~~~~l~~ 195 (211)
++++..+..++
T Consensus 99 ~~~~~~~~~a~~y~~ 113 (233)
T TIGR01198 99 TELSDIEEAAELYEQ 113 (233)
T ss_pred CccCCHHHHHHHHHH
Confidence 57776666554
No 169
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=45.05 E-value=97 Score=28.98 Aligned_cols=103 Identities=21% Similarity=0.286 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHH-----cCCeEEecCCCCC---hhHHHHHHHHhcCC--eEEEEecCcCCCCCCCCCCCceeeecCCHHH
Q 028256 37 LAAIQLGKQLVE-----RNIDLVYGGGSIG---LMGLVSQAVYDGGR--HVLGVIPKTLMPREITGDTVGEVKAVSGMHQ 106 (211)
Q Consensus 37 ~~A~~lG~~la~-----~g~~lv~GGg~~G---lM~a~a~gA~~~gG--~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~ 106 (211)
+.|..++..+|+ .+.-.+|||-..| ||.|+...+.+.+- +++.+....+. +.+...+....|.+
T Consensus 96 ~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~------~~~v~a~~~~~~~~ 169 (408)
T COG0593 96 RLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFT------NDFVKALRDNEMEK 169 (408)
T ss_pred HHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHH------HHHHHHHHhhhHHH
Confidence 567888888888 4567788873333 69999999999875 55555332211 01111111233322
Q ss_pred HHHHHHHhcCEEEE-----ecCCcCcHHHHHHHHHHHHhCCCCCcEEE
Q 028256 107 RKAEMARQADAFIA-----LPGGYGTLEELLEVITWAQLGIHDKPVGL 149 (211)
Q Consensus 107 Rk~~m~~~sDa~Iv-----lpGG~GTL~El~~~~~~~~lg~~~kPiil 149 (211)
=|... +.|++++ +.|.-.|.+|+|.+.. .+...+|-|++
T Consensus 170 Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN--~l~~~~kqIvl 213 (408)
T COG0593 170 FKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFN--ALLENGKQIVL 213 (408)
T ss_pred HHHhh--ccCeeeechHhHhcCChhHHHHHHHHHH--HHHhcCCEEEE
Confidence 22222 6787665 6788899999998764 44434554444
No 170
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE
Probab=44.85 E-value=21 Score=31.74 Aligned_cols=31 Identities=35% Similarity=0.551 Sum_probs=25.5
Q ss_pred HHHHHHHHHcCCeEEecCCCCChhHHHHHHHHh
Q 028256 40 IQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYD 72 (211)
Q Consensus 40 ~~lG~~la~~g~~lv~GGg~~GlM~a~a~gA~~ 72 (211)
++|+|.|+.+...||.+|| |+=+.++-|+++
T Consensus 5 ~rl~r~l~~~~~gLvL~GG--G~RG~ahiGvL~ 35 (306)
T cd07225 5 SRLARVLTGNSIALVLGGG--GARGCAHIGVIK 35 (306)
T ss_pred HHHHHHhcCCCEEEEECCh--HHHHHHHHHHHH
Confidence 4689999999999999886 777777777765
No 171
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=44.83 E-value=64 Score=29.10 Aligned_cols=52 Identities=15% Similarity=0.179 Sum_probs=36.8
Q ss_pred HhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCC-----ccchhHHHHHHHH
Q 028256 113 RQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD-----GYYNSLLSFIDKA 166 (211)
Q Consensus 113 ~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~~-----g~~~~l~~~l~~~ 166 (211)
+..|+|||.-| .-||+|-...+++.-. ..+|||||.+.- --.|...++.+.+
T Consensus 80 ~~~dG~VVtHG-TDTmeeTA~~L~~~l~-~~~kPVVlTGAmrP~~~~~sDg~~NL~~Av 136 (335)
T PRK09461 80 DDYDGFVILHG-TDTMAYTASALSFMLE-NLGKPVIVTGSQIPLAELRSDGQTNLLNAL 136 (335)
T ss_pred ccCCeEEEeec-cchHHHHHHHHHHHHh-CCCCCEEEeCCCCCCCCCCchHHHHHHHHH
Confidence 56799999985 7999999988876432 237999998651 2356666665543
No 172
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=44.53 E-value=2.5e+02 Score=25.58 Aligned_cols=103 Identities=14% Similarity=0.204 Sum_probs=62.2
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeE-EecCCCCChhHHHHHHHHhcCCeEEEEec-CcCCCCCCCCCC
Q 028256 17 RFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDL-VYGGGSIGLMGLVSQAVYDGGRHVLGVIP-KTLMPREITGDT 94 (211)
Q Consensus 17 ~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~l-v~GGg~~GlM~a~a~gA~~~gG~viGv~P-~~~~~~e~~~~~ 94 (211)
..-++=|.+-.+...++. ....+-++.|.+.|+.+ +|-. + -+. .++...+.|- +.|.| .....- ...
T Consensus 166 ~~iKlEvi~e~~~llpd~--~~~v~aa~~L~~~Gf~v~~yc~-~-d~~--~a~~l~~~g~--~avmPl~~pIGs---g~g 234 (326)
T PRK11840 166 DLVKLEVLGDAKTLYPDM--VETLKATEILVKEGFQVMVYCS-D-DPI--AAKRLEDAGA--VAVMPLGAPIGS---GLG 234 (326)
T ss_pred CeEEEEEcCCCCCcccCH--HHHHHHHHHHHHCCCEEEEEeC-C-CHH--HHHHHHhcCC--EEEeeccccccC---CCC
Confidence 344677776555433222 23456778888999998 6665 3 333 3344444443 66766 332110 111
Q ss_pred CceeeecCCHHHHHHHHHHhcCEEEEecCCcCcHHHHHHHHHH
Q 028256 95 VGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITW 137 (211)
Q Consensus 95 ~~~~~~~~~~~~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~ 137 (211)
+. =.+.-+.+++..+.-|++.+|+||-+.+..++.+
T Consensus 235 v~-------~p~~i~~~~e~~~vpVivdAGIg~~sda~~Amel 270 (326)
T PRK11840 235 IQ-------NPYTIRLIVEGATVPVLVDAGVGTASDAAVAMEL 270 (326)
T ss_pred CC-------CHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHc
Confidence 11 1344555667789999999999999999988873
No 173
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=44.49 E-value=95 Score=27.67 Aligned_cols=71 Identities=13% Similarity=0.103 Sum_probs=42.6
Q ss_pred HHHHHHHHhcCEEEEe--cCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCCCcccccceEEc
Q 028256 106 QRKAEMARQADAFIAL--PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSA 183 (211)
Q Consensus 106 ~Rk~~m~~~sDa~Ivl--pGG~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~ 183 (211)
+....++..||++|.. |.++|. =++|+++ .++|||..+..|. .+++. ......+.-.
T Consensus 292 ~~~~~~l~~adv~v~~s~~e~~~~--~llEAmA------~G~PVIas~~~g~-~e~i~------------~~~~G~lv~~ 350 (396)
T cd03818 292 DQYLALLQVSDVHVYLTYPFVLSW--SLLEAMA------CGCLVVGSDTAPV-REVIT------------DGENGLLVDF 350 (396)
T ss_pred HHHHHHHHhCcEEEEcCcccccch--HHHHHHH------CCCCEEEcCCCCc-hhhcc------------cCCceEEcCC
Confidence 3444567889998864 344442 3677777 7999999876532 22211 1112223335
Q ss_pred CCHHHHHHHhhhhc
Q 028256 184 QTAHELICKLEVFF 197 (211)
Q Consensus 184 ~d~ee~~~~l~~~~ 197 (211)
+|++++.+.|.+..
T Consensus 351 ~d~~~la~~i~~ll 364 (396)
T cd03818 351 FDPDALAAAVIELL 364 (396)
T ss_pred CCHHHHHHHHHHHH
Confidence 68888888887654
No 174
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=44.46 E-value=41 Score=30.03 Aligned_cols=37 Identities=16% Similarity=0.261 Sum_probs=29.8
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEE
Q 028256 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV 54 (211)
Q Consensus 18 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv 54 (211)
+++|+|.+|......+.=...|+.+.+.|.+.||.++
T Consensus 3 ~~~i~vl~GG~S~E~evSl~s~~~v~~~l~~~~~~v~ 39 (343)
T PRK14568 3 RIKVGILFGGCSEEHPVSVKSAIEVARNLDTEKYEPF 39 (343)
T ss_pred CcEEEEEECCCCCchHHHHHhHHHHHHhhcccCCeEE
Confidence 3578888777766666667889999999999999885
No 175
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=44.38 E-value=76 Score=28.76 Aligned_cols=33 Identities=21% Similarity=0.126 Sum_probs=23.2
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeE
Q 028256 17 RFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDL 53 (211)
Q Consensus 17 ~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~l 53 (211)
+++.|+|.|.++.+. ....++|.+.|.++|+.+
T Consensus 204 ~~~~~~~~g~~~~GK----tt~~~~l~~~l~~~g~~v 236 (366)
T PRK14489 204 APPLLGVVGYSGTGK----TTLLEKLIPELIARGYRI 236 (366)
T ss_pred CccEEEEecCCCCCH----HHHHHHHHHHHHHcCCEE
Confidence 567788887666652 234577888888888766
No 176
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=44.18 E-value=40 Score=29.11 Aligned_cols=37 Identities=16% Similarity=0.118 Sum_probs=26.7
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEe
Q 028256 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVY 55 (211)
Q Consensus 19 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~ 55 (211)
++|+|.+|+.......-.+.++++-+.|.+.||.++.
T Consensus 5 ~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~ 41 (304)
T PRK01372 5 GKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHP 41 (304)
T ss_pred cEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEE
Confidence 4688887766554333345779999999999998744
No 177
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=44.09 E-value=47 Score=28.81 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=26.5
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEE
Q 028256 20 RVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV 54 (211)
Q Consensus 20 ~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv 54 (211)
+|+|.+|..+...+.-...++++.+.|.+.||.++
T Consensus 2 ~v~v~~gg~s~e~~~sl~s~~~i~~al~~~g~~~~ 36 (299)
T PRK14571 2 RVALLMGGVSREREISLRSGERVKKALEKLGYEVT 36 (299)
T ss_pred eEEEEeCCCCCCccchHHHHHHHHHHHHHcCCeEE
Confidence 57776666555555556889999999999999763
No 178
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=43.52 E-value=1.3e+02 Score=25.88 Aligned_cols=69 Identities=22% Similarity=0.276 Sum_probs=40.4
Q ss_pred HHHHHHhcCEEEEecC---------CcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCCCccccc
Q 028256 108 KAEMARQADAFIALPG---------GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARY 178 (211)
Q Consensus 108 k~~m~~~sDa~IvlpG---------G~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~ 178 (211)
...++..||++|. |. |+|+ =++|+++ .++||+.-+..+.- +++ ......
T Consensus 258 l~~~~~~ad~~v~-ps~~~~~~~~E~~~~--~~~EA~a------~G~PvI~s~~~~~~-e~i------------~~~~~g 315 (367)
T cd05844 258 VRELMRRARIFLQ-PSVTAPSGDAEGLPV--VLLEAQA------SGVPVVATRHGGIP-EAV------------EDGETG 315 (367)
T ss_pred HHHHHHhCCEEEE-CcccCCCCCccCCch--HHHHHHH------cCCCEEEeCCCCch-hhe------------ecCCee
Confidence 3446788998765 32 2232 4667776 79999987765422 211 111122
Q ss_pred ceEEcCCHHHHHHHhhhhcc
Q 028256 179 IIVSAQTAHELICKLEVFFF 198 (211)
Q Consensus 179 ~i~~~~d~ee~~~~l~~~~~ 198 (211)
.+.-.+|++++.+.|.+...
T Consensus 316 ~~~~~~d~~~l~~~i~~l~~ 335 (367)
T cd05844 316 LLVPEGDVAALAAALGRLLA 335 (367)
T ss_pred EEECCCCHHHHHHHHHHHHc
Confidence 23335688888888876543
No 179
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=43.27 E-value=1.6e+02 Score=23.07 Aligned_cols=40 Identities=13% Similarity=0.038 Sum_probs=34.3
Q ss_pred HHHHHHHHHcCCeEEecCCCCChhHHHHHHHHhcCCeEEEE
Q 028256 40 IQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (211)
Q Consensus 40 ~~lG~~la~~g~~lv~GGg~~GlM~a~a~gA~~~gG~viGv 80 (211)
.-+...|-.+||.+++-|-. =-.+...+.|.+.+..+||+
T Consensus 19 ~iv~~~l~~~GfeVi~LG~~-v~~e~~v~aa~~~~adiVgl 58 (134)
T TIGR01501 19 KILDHAFTNAGFNVVNLGVL-SPQEEFIKAAIETKADAILV 58 (134)
T ss_pred HHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEE
Confidence 45677777899999999854 66899999999999999999
No 180
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=43.26 E-value=66 Score=29.41 Aligned_cols=34 Identities=26% Similarity=0.277 Sum_probs=27.8
Q ss_pred CEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeC
Q 028256 116 DAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 152 (211)
Q Consensus 116 Da~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~ 152 (211)
|+|||..| .-||+|-...++++--. +|||+|.+.
T Consensus 102 dGvVItHG-TDTmeeTA~~L~l~l~~--~kPVVlTGa 135 (351)
T COG0252 102 DGVVITHG-TDTMEETAFFLSLTLNT--PKPVVLTGA 135 (351)
T ss_pred CeEEEeCC-CchHHHHHHHHHHHhcC--CCCEEEeCC
Confidence 88888875 79999999888876543 899999865
No 181
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=43.22 E-value=72 Score=26.84 Aligned_cols=69 Identities=19% Similarity=0.292 Sum_probs=38.7
Q ss_pred HHHHHHhcCEEEEecC--CcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCCCcccccceEEcCC
Q 028256 108 KAEMARQADAFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQT 185 (211)
Q Consensus 108 k~~m~~~sDa~IvlpG--G~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d 185 (211)
...++..||++|.-.. |+|. =++|+++ .++||+..+..+. .+++. ......+.-.+|
T Consensus 260 ~~~~~~~~d~~l~~s~~e~~~~--~~lEa~a------~g~PvI~~~~~~~-~~~i~------------~~~~g~~~~~~~ 318 (364)
T cd03814 260 LAAAYASADVFVFPSRTETFGL--VVLEAMA------SGLPVVAPDAGGP-ADIVT------------DGENGLLVEPGD 318 (364)
T ss_pred HHHHHHhCCEEEECcccccCCc--HHHHHHH------cCCCEEEcCCCCc-hhhhc------------CCcceEEcCCCC
Confidence 3456788998664321 2232 2566776 7999998776542 22211 112223444567
Q ss_pred HHHHHHHhhhhc
Q 028256 186 AHELICKLEVFF 197 (211)
Q Consensus 186 ~ee~~~~l~~~~ 197 (211)
.+++.+.|.+..
T Consensus 319 ~~~l~~~i~~l~ 330 (364)
T cd03814 319 AEAFAAALAALL 330 (364)
T ss_pred HHHHHHHHHHHH
Confidence 777777776654
No 182
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=42.75 E-value=30 Score=26.15 Aligned_cols=38 Identities=26% Similarity=0.469 Sum_probs=23.6
Q ss_pred HHHhcCE--EEEecCCcCcHHHHHHHHHHHHhCCC-CCcEEEE
Q 028256 111 MARQADA--FIALPGGYGTLEELLEVITWAQLGIH-DKPVGLL 150 (211)
Q Consensus 111 m~~~sDa--~IvlpGG~GTL~El~~~~~~~~lg~~-~kPiill 150 (211)
.....+. .|+.-||=||++|+...+. ..... ..|+.++
T Consensus 48 ~~~~~~~~~~ivv~GGDGTl~~vv~~l~--~~~~~~~~~l~ii 88 (130)
T PF00781_consen 48 ILALDDYPDVIVVVGGDGTLNEVVNGLM--GSDREDKPPLGII 88 (130)
T ss_dssp HHHHTTS-SEEEEEESHHHHHHHHHHHC--TSTSSS--EEEEE
T ss_pred HHhhccCccEEEEEcCccHHHHHHHHHh--hcCCCccceEEEe
Confidence 3344443 8888899999999987663 11111 1277777
No 183
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=42.57 E-value=48 Score=29.44 Aligned_cols=37 Identities=19% Similarity=0.228 Sum_probs=28.7
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEE
Q 028256 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV 54 (211)
Q Consensus 18 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv 54 (211)
+++|+|.+|......+.-...|+.+.+.|.+.||.++
T Consensus 3 ~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~~~ 39 (333)
T PRK01966 3 KMRVALLFGGRSAEHEVSLVSAKSVLKALDKEKYEVV 39 (333)
T ss_pred CcEEEEEeCCCCCcchhhHHHHHHHHHHhcccCCEEE
Confidence 3478887777766566666889999999999999874
No 184
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=42.57 E-value=1.4e+02 Score=22.41 Aligned_cols=51 Identities=16% Similarity=0.300 Sum_probs=27.7
Q ss_pred HHHhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHH
Q 028256 111 MARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVD 168 (211)
Q Consensus 111 m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~ 168 (211)
+.+.+|++|=+. -.-++.+..+.+. .+++|+++ ++.||-+.-++.++.+.+
T Consensus 64 ~~~~~DVvIDfT-~p~~~~~~~~~~~-----~~g~~~Vi-GTTG~~~~~~~~l~~~a~ 114 (124)
T PF01113_consen 64 LLEEADVVIDFT-NPDAVYDNLEYAL-----KHGVPLVI-GTTGFSDEQIDELEELAK 114 (124)
T ss_dssp HTTH-SEEEEES--HHHHHHHHHHHH-----HHT-EEEE-E-SSSHHHHHHHHHHHTT
T ss_pred hcccCCEEEEcC-ChHHhHHHHHHHH-----hCCCCEEE-ECCCCCHHHHHHHHHHhc
Confidence 344599999987 2222333333222 25778776 567887777777776543
No 185
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=42.53 E-value=1.5e+02 Score=25.96 Aligned_cols=28 Identities=29% Similarity=0.370 Sum_probs=16.9
Q ss_pred CeEEecCCCCChhHHHHHHHHhcCC-eEEEE
Q 028256 51 IDLVYGGGSIGLMGLVSQAVYDGGR-HVLGV 80 (211)
Q Consensus 51 ~~lv~GGg~~GlM~a~a~gA~~~gG-~viGv 80 (211)
..+|+|+|+.|+| +..-|+..|. +++.+
T Consensus 172 ~VlV~G~G~vG~~--aiqlak~~G~~~Vi~~ 200 (343)
T PRK09880 172 RVFVSGVGPIGCL--IVAAVKTLGAAEIVCA 200 (343)
T ss_pred EEEEECCCHHHHH--HHHHHHHcCCcEEEEE
Confidence 4567777655544 3455666776 56665
No 186
>PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain. The name chloroplast RNA splicing and ribosome maturation (CRM) has been suggested to reflect the functions established for the four characterised members of the family: Zea mays (Maize) CRS1 (Q9FYT6 from SWISSPROT), CAF1 (Q84N49 from SWISSPROT) and CAF2 (Q84N48 from SWISSPROT) proteins and the Escherichia coli protein YhbY (P0AGK4 from SWISSPROT). The CRM domain is found in eubacteria, archaea, and plants. The CRM domain is represented as a stand-alone protein in archaea and bacteria, and in single- and multi-domain proteins in plants. It has been suggested that prokaryotic CRM proteins existed as ribosome-associated proteins prior to the divergence of archaea and bacteria, and that they were co-opted in the plant lineage as RNA binding modules by incorporation into diverse protein contexts. Plant CRM domains are predicted to reside not only in the chloroplast, but also in the mitochondrion and the nucleo/cytoplasmic compartment. The diversity of the CRM domain family in plants suggests a diverse set of RNA targets [, ]. The CRM domain is a compact alpha/beta domain consisting of a four-stranded beta sheet and three alpha helices with an alpha-beta-alpha-beta-alpha-beta-beta topology. The beta sheet face is basic, consistent with a role in RNA binding. Proximal to the basic beta sheet face is another moiety that could contribute to nucleic acid recognition. Connecting strand beta1 and helix alpha2 is a loop with a six amino acid motif, GxxG flanked by large aliphatic residues, within which one 'x' is typically a basic residue []. Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants []. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing []. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes []. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome [].; GO: 0003723 RNA binding; PDB: 1RQ8_A 1JO0_B 1LN4_A.
Probab=42.42 E-value=22 Score=25.39 Aligned_cols=58 Identities=17% Similarity=0.141 Sum_probs=32.6
Q ss_pred HhCCCCCcEEEEeCCccchhHHHHHHH-HHHcCCCCcccccceEEcCCHHHHHHHhhhhcc
Q 028256 139 QLGIHDKPVGLLNVDGYYNSLLSFIDK-AVDEGFIAPAARYIIVSAQTAHELICKLEVFFF 198 (211)
Q Consensus 139 ~lg~~~kPiill~~~g~~~~l~~~l~~-~~~~g~i~~~~~~~i~~~~d~ee~~~~l~~~~~ 198 (211)
..+..-+|++.++.+|.++.+++-++. +..+..+.-+... ...+|.+++.+.|++...
T Consensus 11 ~~a~~l~p~v~IGk~Glt~~vi~~i~~~l~~~eLvKVk~~~--~~~~~~~~~~~~l~~~t~ 69 (84)
T PF01985_consen 11 KLAHHLKPVVQIGKNGLTDGVIEEIDDALEKHELVKVKVLG--NCREDRKEIAEQLAEKTG 69 (84)
T ss_dssp HHHTTC--SEEE-TTSS-HHHHHHHHHHHHHHSEEEEEETT----HHHHHHHHHHHHHHHT
T ss_pred HHhcCCCCeEEECCCCCCHHHHHHHHHHHHhCCeeEEEEcc--CCHHHHHHHHHHHHHHhC
Confidence 333456899999999999999998854 5444444322221 134456667777766543
No 187
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=42.39 E-value=1.6e+02 Score=27.34 Aligned_cols=33 Identities=12% Similarity=0.150 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHhcCEEEEecCCcCcHHHHHHH
Q 028256 102 SGMHQRKAEMARQADAFIALPGGYGTLEELLEV 134 (211)
Q Consensus 102 ~~~~~Rk~~m~~~sDa~IvlpGG~GTL~El~~~ 134 (211)
+...++..-+++.||++|..+--+|+-.++...
T Consensus 326 ~~~~~~a~~~~~~~~~vi~~~~~~g~~~~~~~~ 358 (402)
T PRK09536 326 DSTRAEATDLIIAADAVVAAGVAAAARSGVIGL 358 (402)
T ss_pred HHHHHHHHHHHHhCCEEEECCCccCCCCCchhe
Confidence 344678888999999999987777776666543
No 188
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=42.29 E-value=83 Score=26.83 Aligned_cols=71 Identities=13% Similarity=-0.012 Sum_probs=41.4
Q ss_pred HHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCCCcccccceEEcCCHH
Q 028256 108 KAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAH 187 (211)
Q Consensus 108 k~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~e 187 (211)
...++..||++|.-.-.-|.-.=++|+++ .++|||.-+..|. ..++ ++ ....+...++++
T Consensus 260 ~~~~~~~adi~v~ps~~E~~~~~~lEAma------~G~PvI~s~~~~~-~~~i---~~----------~~~~~~~~~~~~ 319 (358)
T cd03812 260 VPELLQAMDVFLFPSLYEGLPLVLIEAQA------SGLPCILSDTITK-EVDL---TD----------LVKFLSLDESPE 319 (358)
T ss_pred HHHHHHhcCEEEecccccCCCHHHHHHHH------hCCCEEEEcCCch-hhhh---cc----------CccEEeCCCCHH
Confidence 33467889987653221122224677777 7999999877543 2211 11 112234455679
Q ss_pred HHHHHhhhhcc
Q 028256 188 ELICKLEVFFF 198 (211)
Q Consensus 188 e~~~~l~~~~~ 198 (211)
++.+.|.+...
T Consensus 320 ~~a~~i~~l~~ 330 (358)
T cd03812 320 IWAEEILKLKS 330 (358)
T ss_pred HHHHHHHHHHh
Confidence 98888887643
No 189
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=41.86 E-value=69 Score=28.76 Aligned_cols=29 Identities=17% Similarity=0.023 Sum_probs=20.3
Q ss_pred ceeeecCCHHHHHHHHHHhcCEEEEecCC
Q 028256 96 GEVKAVSGMHQRKAEMARQADAFIALPGG 124 (211)
Q Consensus 96 ~~~~~~~~~~~Rk~~m~~~sDa~IvlpGG 124 (211)
.+-++-+|+..-+-.-.-.||.+|+|-.-
T Consensus 207 VeAVIDKDlasalLA~~i~AD~liILTdV 235 (312)
T COG0549 207 VEAVIDKDLASALLAEQIDADLLIILTDV 235 (312)
T ss_pred eeEEEccHHHHHHHHHHhcCCEEEEEecc
Confidence 46678888864444444569999999764
No 190
>PRK08862 short chain dehydrogenase; Provisional
Probab=41.73 E-value=1.2e+02 Score=25.03 Aligned_cols=54 Identities=6% Similarity=-0.029 Sum_probs=30.8
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEecCCCCChhHHHHHHHHhcCCeEEEE
Q 028256 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (211)
Q Consensus 19 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~a~gA~~~gG~viGv 80 (211)
+.+.|.|+|+ + ..+++++.|+++|+.|+.-+-...-.+.+.+...+.++.+..+
T Consensus 6 k~~lVtGas~-G-------IG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~ 59 (227)
T PRK08862 6 SIILITSAGS-V-------LGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSF 59 (227)
T ss_pred eEEEEECCcc-H-------HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEE
Confidence 4666776554 2 2467888888999998765433233333344444445554443
No 191
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=41.71 E-value=48 Score=29.65 Aligned_cols=51 Identities=24% Similarity=0.212 Sum_probs=34.4
Q ss_pred hcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCC-----ccchhHHHHHHHH
Q 028256 114 QADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD-----GYYNSLLSFIDKA 166 (211)
Q Consensus 114 ~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~~-----g~~~~l~~~l~~~ 166 (211)
..|+|||..| .-||+|....+++.- .-.+||||+.+.- --.|...++++.+
T Consensus 77 ~~dG~VVtHG-TDTmeeTA~~Ls~~l-~~l~kPVVlTGa~rp~~~~~sDg~~NL~~Av 132 (323)
T smart00870 77 GYDGVVVTHG-TDTLEETAYFLSLTL-DSLDKPVVLTGAMRPATALSSDGPANLLDAV 132 (323)
T ss_pred CCCEEEEecC-CccHHHHHHHHHHHh-hcCCCCEEEECCCCCCCCCCchhHHHHHHHH
Confidence 4689988875 699999998887532 2237999998541 2345556655443
No 192
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=41.53 E-value=1.7e+02 Score=27.78 Aligned_cols=60 Identities=27% Similarity=0.375 Sum_probs=32.7
Q ss_pred eeeecCCHHHHHHHHHHhc--CEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHH
Q 028256 97 EVKAVSGMHQRKAEMARQA--DAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLL 160 (211)
Q Consensus 97 ~~~~~~~~~~Rk~~m~~~s--Da~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~ 160 (211)
+++.+++-..-|.+.-... .-+|++.||=||+.|+..-+-.+ ....-|+.++-. | |+++.
T Consensus 96 ~Ivktd~~gqak~l~e~~~t~~Dii~VaGGDGT~~eVVTGi~Rr--r~~~~pv~~~P~-G-~~~l~ 157 (535)
T KOG4435|consen 96 DIVKTDNQGQAKALAEAVDTQEDIIYVAGGDGTIGEVVTGIFRR--RKAQLPVGFYPG-G-YDNLW 157 (535)
T ss_pred EEEecCcHHHHHHHHHHhccCCCeEEEecCCCcHHHhhHHHHhc--ccccCceeeccC-c-cchHh
Confidence 3444455444444332222 13677789999999997544211 123468888743 3 45543
No 193
>cd04249 AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis. There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK).
Probab=41.50 E-value=2.2e+02 Score=24.13 Aligned_cols=40 Identities=20% Similarity=0.235 Sum_probs=24.2
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC--eEEecCCCC
Q 028256 21 VCVFCGSSPGKSPSYQLAAIQLGKQLVERNI--DLVYGGGSI 60 (211)
Q Consensus 21 I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~--~lv~GGg~~ 60 (211)
|--||||.....+.+...+..+.......|. .||.|||+.
T Consensus 2 ViK~GGs~l~~~~~~~~~~~~i~~~~~~~~~~iVlVhGgg~~ 43 (252)
T cd04249 2 VIKLGGALLETEAALEQLFSALSEYQQQHNRQLVIVHGGGCV 43 (252)
T ss_pred EEEEChHHhcChhhHHHHHHHHHHHHHhCCCCEEEECCCCHH
Confidence 3457787764333455566666654444444 578998874
No 194
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=41.45 E-value=2.1e+02 Score=25.22 Aligned_cols=30 Identities=20% Similarity=0.268 Sum_probs=18.4
Q ss_pred CCeEEecCCCCChhHHHHHHHHhcCCe-EEEEe
Q 028256 50 NIDLVYGGGSIGLMGLVSQAVYDGGRH-VLGVI 81 (211)
Q Consensus 50 g~~lv~GGg~~GlM~a~a~gA~~~gG~-viGv~ 81 (211)
...+|+|+|..| .++..-|+..|.. ++.+.
T Consensus 178 ~~VlV~G~g~vG--~~a~~~ak~~G~~~Vi~~~ 208 (358)
T TIGR03451 178 DSVAVIGCGGVG--DAAIAGAALAGASKIIAVD 208 (358)
T ss_pred CEEEEECCCHHH--HHHHHHHHHcCCCeEEEEc
Confidence 456688765433 3455567777774 77774
No 195
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=41.39 E-value=59 Score=24.78 Aligned_cols=32 Identities=19% Similarity=0.320 Sum_probs=20.5
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeE
Q 028256 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDL 53 (211)
Q Consensus 19 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~l 53 (211)
|.|+|++ +..+... ...|..|++.||++|..+
T Consensus 1 k~i~v~s-~~~g~G~--t~~a~~lA~~la~~~~~V 32 (157)
T PF13614_consen 1 KVIAVWS-PKGGVGK--TTLALNLAAALARKGKKV 32 (157)
T ss_dssp EEEEEEE-SSTTSSH--HHHHHHHHHHHHHTTT-E
T ss_pred CEEEEEC-CCCCCCH--HHHHHHHHHHHHhcCCCe
Confidence 4578884 3433333 246888999999988654
No 196
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=41.20 E-value=21 Score=33.27 Aligned_cols=27 Identities=44% Similarity=0.770 Sum_probs=19.6
Q ss_pred eEEecCCCCChhHHHHHHHHhcCCeEEEE
Q 028256 52 DLVYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (211)
Q Consensus 52 ~lv~GGg~~GlM~a~a~gA~~~gG~viGv 80 (211)
.+|-|||+.|+|-|+.-+ ++|.+|+=+
T Consensus 6 viIIGgGpAGlMaA~~aa--~~G~~V~li 32 (408)
T COG2081 6 VIIIGGGPAGLMAAISAA--KAGRRVLLI 32 (408)
T ss_pred EEEECCCHHHHHHHHHHh--hcCCEEEEE
Confidence 468899999999887644 466666544
No 197
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=41.18 E-value=35 Score=27.66 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=18.1
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHH
Q 028256 18 FKRVCVFCGSSPGKSPSYQLAAIQ 41 (211)
Q Consensus 18 ~~~I~Vfggs~~~~~~~~~~~A~~ 41 (211)
|++|||||||=.+..--+...|++
T Consensus 1 m~~i~ifGGSFDP~H~GHl~ia~~ 24 (174)
T PRK08887 1 MKKIAVFGSAFNPPSLGHKSVIES 24 (174)
T ss_pred CCeEEEeCCCCCCCCHHHHHHHHH
Confidence 467999999988777666666555
No 198
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=40.83 E-value=38 Score=26.01 Aligned_cols=31 Identities=16% Similarity=0.176 Sum_probs=19.3
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeE
Q 028256 20 RVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDL 53 (211)
Q Consensus 20 ~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~l 53 (211)
+|.|+.+|..++.. +.|+.+.+.|...|+.+
T Consensus 2 ~i~IiY~S~tGnTe---~iA~~ia~~l~~~g~~v 32 (140)
T TIGR01754 2 RILLAYLSLSGNTE---EVAFMIQDYLQKDGHEV 32 (140)
T ss_pred eEEEEEECCCChHH---HHHHHHHHHHhhCCeeE
Confidence 45555577777533 55777777776665543
No 199
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=40.69 E-value=1.3e+02 Score=27.18 Aligned_cols=63 Identities=17% Similarity=0.177 Sum_probs=36.2
Q ss_pred HHHhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCCCcccccceEEcCCHHHHH
Q 028256 111 MARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELI 190 (211)
Q Consensus 111 m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee~~ 190 (211)
++.-||.+| ||.|||. .|+.. .+.|.|-+..+ .+..+-. -+.+.|. ++.+.|++|++
T Consensus 245 Ll~~a~l~I---g~ggTMa--~EAA~------LGtPaIs~~~g-~~~~vd~---~L~~~Gl--------l~~~~~~~ei~ 301 (335)
T PF04007_consen 245 LLYYADLVI---GGGGTMA--REAAL------LGTPAISCFPG-KLLAVDK---YLIEKGL--------LYHSTDPDEIV 301 (335)
T ss_pred HHHhcCEEE---eCCcHHH--HHHHH------hCCCEEEecCC-cchhHHH---HHHHCCC--------eEecCCHHHHH
Confidence 444556544 4556654 23333 47888865432 2222222 2445554 68899999999
Q ss_pred HHhhhh
Q 028256 191 CKLEVF 196 (211)
Q Consensus 191 ~~l~~~ 196 (211)
+.+.+-
T Consensus 302 ~~v~~~ 307 (335)
T PF04007_consen 302 EYVRKN 307 (335)
T ss_pred HHHHHh
Confidence 987653
No 200
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=40.36 E-value=49 Score=23.22 Aligned_cols=34 Identities=21% Similarity=0.153 Sum_probs=21.2
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEe
Q 028256 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVY 55 (211)
Q Consensus 18 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~ 55 (211)
++.+.|++ ...+.. ...=.++++.|+++|+.++.
T Consensus 15 ~k~~v~i~-HG~~eh---~~ry~~~a~~L~~~G~~V~~ 48 (79)
T PF12146_consen 15 PKAVVVIV-HGFGEH---SGRYAHLAEFLAEQGYAVFA 48 (79)
T ss_pred CCEEEEEe-CCcHHH---HHHHHHHHHHHHhCCCEEEE
Confidence 35555553 333322 23336789999999999874
No 201
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=40.18 E-value=1e+02 Score=24.17 Aligned_cols=53 Identities=19% Similarity=0.242 Sum_probs=35.1
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEecCC---C-CChhHHHHHHHHhcC
Q 028256 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGG---S-IGLMGLVSQAVYDGG 74 (211)
Q Consensus 18 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg---~-~GlM~a~a~gA~~~g 74 (211)
+++|.++|-.+...+| .|+.+.+.++..++.+-+.|- + .++-.-+.+-+.+.|
T Consensus 2 ~~kVLFVC~gN~cRSp----mAE~l~~~~~~~~~~v~SAGt~~~~g~~~~~~a~~vl~e~G 58 (139)
T COG0394 2 MMKVLFVCTGNICRSP----MAEALLRHLAPDNVEVDSAGTGGHPGEPPDPRAVEVLAEHG 58 (139)
T ss_pred CceEEEEcCCCcccCH----HHHHHHHHhccCCeEEECCccCCCCCCCCCHHHHHHHHHcC
Confidence 5788999987777554 688899999888888776662 1 124444444444544
No 202
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=40.16 E-value=2.6e+02 Score=24.62 Aligned_cols=105 Identities=18% Similarity=0.182 Sum_probs=57.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCeE-----EecCCCCCh---------hHHHHHHHHhcCCeEEEEecCcCCCCCCCCC
Q 028256 28 SPGKSPSYQLAAIQLGKQLVERNIDL-----VYGGGSIGL---------MGLVSQAVYDGGRHVLGVIPKTLMPREITGD 93 (211)
Q Consensus 28 ~~~~~~~~~~~A~~lG~~la~~g~~l-----v~GGg~~Gl---------M~a~a~gA~~~gG~viGv~P~~~~~~e~~~~ 93 (211)
|.-+.++-.+.++++.+..-..|..| ..||...|. .+.+.+=+.+.|-..+.|.-... |-
T Consensus 101 S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvsiGt~------HG 174 (276)
T cd00947 101 SHLPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVEETGVDALAVAIGTS------HG 174 (276)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCcccccccCCCHHHHHHHHHHHCCCEEEeccCcc------cc
Confidence 33345566678888888887788776 223333231 33344444445544444411110 10
Q ss_pred CCceeeecCCH-HHHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHhCC
Q 028256 94 TVGEVKAVSGM-HQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGI 142 (211)
Q Consensus 94 ~~~~~~~~~~~-~~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~ 142 (211)
.|.. -...+ .+|...+-+..+.-+||-||+|+-+|-+... .+.|.
T Consensus 175 ~Y~~--~~p~L~~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~a--i~~Gi 220 (276)
T cd00947 175 AYKG--GEPKLDFDRLKEIAERVNVPLVLHGGSGIPDEQIRKA--IKLGV 220 (276)
T ss_pred ccCC--CCCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHH--HHcCC
Confidence 0000 01112 5677777777799999999999998866543 34443
No 203
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=40.01 E-value=1.3e+02 Score=27.79 Aligned_cols=74 Identities=15% Similarity=0.250 Sum_probs=42.9
Q ss_pred HHHHHHHHhcCEEEEec--CCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCCCcccccceEEc
Q 028256 106 QRKAEMARQADAFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSA 183 (211)
Q Consensus 106 ~Rk~~m~~~sDa~Ivlp--GG~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~ 183 (211)
+....++..||++|.-. .|+|. =++|+++ .++|||..+..|. .+++. +. .......++-.
T Consensus 323 ~ev~~~~~~aDv~V~pS~~E~~g~--~vlEAmA------~G~PVI~s~~gg~-~eiv~-------~~--~~~~~G~lv~~ 384 (465)
T PLN02871 323 DELSQAYASGDVFVMPSESETLGF--VVLEAMA------SGVPVVAARAGGI-PDIIP-------PD--QEGKTGFLYTP 384 (465)
T ss_pred HHHHHHHHHCCEEEECCcccccCc--HHHHHHH------cCCCEEEcCCCCc-Hhhhh-------cC--CCCCceEEeCC
Confidence 44555778899887532 23443 3667777 7999998876553 22221 10 00112233335
Q ss_pred CCHHHHHHHhhhhc
Q 028256 184 QTAHELICKLEVFF 197 (211)
Q Consensus 184 ~d~ee~~~~l~~~~ 197 (211)
+|++++.+.|.+..
T Consensus 385 ~d~~~la~~i~~ll 398 (465)
T PLN02871 385 GDVDDCVEKLETLL 398 (465)
T ss_pred CCHHHHHHHHHHHH
Confidence 68888888777654
No 204
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=39.96 E-value=81 Score=25.93 Aligned_cols=82 Identities=17% Similarity=0.141 Sum_probs=43.6
Q ss_pred HHHHHHHcCCeEEecCCCCChhHHHHHHHHhcCCeEEEEecCc--CC---CCCCCCCCCce-e---eecCCHHHHHHHHH
Q 028256 42 LGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKT--LM---PREITGDTVGE-V---KAVSGMHQRKAEMA 112 (211)
Q Consensus 42 lG~~la~~g~~lv~GGg~~GlM~a~a~gA~~~gG~viGv~P~~--~~---~~e~~~~~~~~-~---~~~~~~~~Rk~~m~ 112 (211)
|-+.+...+..|-|||| =+|-.-++.++...|.||=+--+. +. ..+...+.+.+ - .+.+-|.+|+.+.-
T Consensus 65 l~~l~~~~~~ViaTGGG--~v~~~enr~~l~~~g~vv~L~~~~e~l~~Rl~~~~~RPll~~~~~~~~l~~L~~~R~~~Y~ 142 (172)
T COG0703 65 LKELLEEDNAVIATGGG--AVLSEENRNLLKKRGIVVYLDAPFETLYERLQRDRKRPLLQTEDPREELEELLEERQPLYR 142 (172)
T ss_pred HHHHhhcCCeEEECCCc--cccCHHHHHHHHhCCeEEEEeCCHHHHHHHhccccCCCcccCCChHHHHHHHHHHHHHHHH
Confidence 33334444577777776 478888888998888777662111 00 11111111111 1 12334578888877
Q ss_pred HhcCEEEEecCCc
Q 028256 113 RQADAFIALPGGY 125 (211)
Q Consensus 113 ~~sDa~IvlpGG~ 125 (211)
+.||.++-.....
T Consensus 143 e~a~~~~~~~~~~ 155 (172)
T COG0703 143 EVADFIIDTDDRS 155 (172)
T ss_pred HhCcEEecCCCCc
Confidence 7666555444444
No 205
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=39.91 E-value=59 Score=26.98 Aligned_cols=36 Identities=17% Similarity=0.312 Sum_probs=27.0
Q ss_pred cceEEEEeCCCCCC-CHHHHHHHHHHHHHHHHcCCeE
Q 028256 18 FKRVCVFCGSSPGK-SPSYQLAAIQLGKQLVERNIDL 53 (211)
Q Consensus 18 ~~~I~Vfggs~~~~-~~~~~~~A~~lG~~la~~g~~l 53 (211)
|++|+|+|.-..++ ---|+..+++|+..|+++|+.+
T Consensus 1 mkkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v 37 (185)
T PF09314_consen 1 MKKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDV 37 (185)
T ss_pred CceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceE
Confidence 78999995333322 1247889999999999999875
No 206
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=39.83 E-value=1.1e+02 Score=25.33 Aligned_cols=72 Identities=21% Similarity=0.343 Sum_probs=42.0
Q ss_pred HHHHHHHHhcCEEEEec--CCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCCCcccccceEEc
Q 028256 106 QRKAEMARQADAFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSA 183 (211)
Q Consensus 106 ~Rk~~m~~~sDa~Ivlp--GG~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~ 183 (211)
+...-++..||++|... .|+|+ =+.|+++ .++|++.-+..+. ..++ .++ ....+.-.
T Consensus 270 ~~~~~~~~~ad~~i~~~~~~~~~~--~~~Ea~~------~G~pvI~~~~~~~-~~~~-------~~~-----~~g~~~~~ 328 (377)
T cd03798 270 EEVPAYYAAADVFVLPSLREGFGL--VLLEAMA------CGLPVVATDVGGI-PEII-------TDG-----ENGLLVPP 328 (377)
T ss_pred HHHHHHHHhcCeeecchhhccCCh--HHHHHHh------cCCCEEEecCCCh-HHHh-------cCC-----cceeEECC
Confidence 33455678899877553 33443 2566666 7899998765432 2221 111 11234456
Q ss_pred CCHHHHHHHhhhhcc
Q 028256 184 QTAHELICKLEVFFF 198 (211)
Q Consensus 184 ~d~ee~~~~l~~~~~ 198 (211)
+|++++.+.|.+...
T Consensus 329 ~~~~~l~~~i~~~~~ 343 (377)
T cd03798 329 GDPEALAEAILRLLA 343 (377)
T ss_pred CCHHHHHHHHHHHhc
Confidence 788988888876543
No 207
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=39.74 E-value=50 Score=28.31 Aligned_cols=71 Identities=6% Similarity=-0.009 Sum_probs=44.2
Q ss_pred HHHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHhC-CCCCcEEEEeCCc-cchhHHHHHHHHHHcCCCCcccccceEE
Q 028256 105 HQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLG-IHDKPVGLLNVDG-YYNSLLSFIDKAVDEGFIAPAARYIIVS 182 (211)
Q Consensus 105 ~~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg-~~~kPiill~~~g-~~~~l~~~l~~~~~~g~i~~~~~~~i~~ 182 (211)
.+|....+..||.+||++ |=-.+.-+..+.... ..+.|++++|.+. .++. ...+.+
T Consensus 169 ~~~~~~~~~~aDl~lviG----TSl~V~pa~~l~~~~~~~g~~~i~iN~~~t~~d~------------------~~~~~i 226 (244)
T PRK14138 169 LREAIRLSSKASLMIVMG----SSLVVYPAAELPLITVRSGGKLVIVNLGETPLDD------------------IATLKY 226 (244)
T ss_pred HHHHHHHHhcCCEEEEeC----cCCeeecHhHHHHHHHHcCCeEEEEcCCCCCCCc------------------ceeEEE
Confidence 466666778899988853 333333333333222 2578999999741 1221 123678
Q ss_pred cCCHHHHHHHhhhhc
Q 028256 183 AQTAHELICKLEVFF 197 (211)
Q Consensus 183 ~~d~ee~~~~l~~~~ 197 (211)
..+..|+++.|.++.
T Consensus 227 ~~~~~~~l~~l~~~~ 241 (244)
T PRK14138 227 NMDVVEFANRVMSEG 241 (244)
T ss_pred eCCHHHHHHHHHHHh
Confidence 899999999987753
No 208
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=39.58 E-value=2.7e+02 Score=24.66 Aligned_cols=101 Identities=12% Similarity=0.099 Sum_probs=54.3
Q ss_pred CCHHHHHHHHHHHHHHHHcCCeE-----EecCCCCC---------hhHHHHHHHHhcCCeEEEEecCcCCCCCCCCCCCc
Q 028256 31 KSPSYQLAAIQLGKQLVERNIDL-----VYGGGSIG---------LMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVG 96 (211)
Q Consensus 31 ~~~~~~~~A~~lG~~la~~g~~l-----v~GGg~~G---------lM~a~a~gA~~~gG~viGv~P~~~~~~e~~~~~~~ 96 (211)
+-++-.+.++++.+.....|..| ..||...| =.+.+.+=+.+.|-..+.|.-... |-.|.
T Consensus 112 ~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv~~TgvD~LAvaiGt~------HG~Y~ 185 (286)
T PRK08610 112 PFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVADGIIYADPKECQELVEKTGIDALAPALGSV------HGPYK 185 (286)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCcccccCCHHHHHHHHHHHCCCEEEeecccc------ccccC
Confidence 34555667777777777777766 22433223 123333334444544444411110 10010
Q ss_pred eeeecCCH-HHHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHhCC
Q 028256 97 EVKAVSGM-HQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGI 142 (211)
Q Consensus 97 ~~~~~~~~-~~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~ 142 (211)
-.+.+ ++|.+.+-+..+.-+||-||+|+-+|-+... .+.|.
T Consensus 186 ---~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~a--i~~GI 227 (286)
T PRK08610 186 ---GEPKLGFKEMEEIGLSTGLPLVLHGGTGIPTKDIQKA--IPFGT 227 (286)
T ss_pred ---CCCCCCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHH--HHCCC
Confidence 00122 5677667777788999999999998876543 34444
No 209
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=39.54 E-value=36 Score=26.92 Aligned_cols=75 Identities=16% Similarity=0.169 Sum_probs=45.3
Q ss_pred HHHHHHHHHhcCEEEEecCC--cCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchh-HHHHHHHHHHcCCCCcccccceE
Q 028256 105 HQRKAEMARQADAFIALPGG--YGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNS-LLSFIDKAVDEGFIAPAARYIIV 181 (211)
Q Consensus 105 ~~Rk~~m~~~sDa~IvlpGG--~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~-l~~~l~~~~~~g~i~~~~~~~i~ 181 (211)
......++..||++++-+=- -||++++.+... ..+++++++++.=+-+ . +.+.|+ + ... =.
T Consensus 53 ~~~~~~~l~~aD~viiTGsTlvN~Ti~~iL~~~~------~~~~vil~GpS~~~~P~~------l~~~Gv-~--~v~-g~ 116 (147)
T PF04016_consen 53 DEDAEEILPWADVVIITGSTLVNGTIDDILELAR------NAREVILYGPSAPLHPEA------LFDYGV-T--YVG-GS 116 (147)
T ss_dssp GGGHHHHGGG-SEEEEECHHCCTTTHHHHHHHTT------TSSEEEEESCCGGS-GGG------GCCTT--S--EEE-EE
T ss_pred HHHHHHHHccCCEEEEEeeeeecCCHHHHHHhCc------cCCeEEEEecCchhhHHH------HHhCCC-C--EEE-EE
Confidence 34566788999976665433 399999986543 4689999988632222 1 112221 0 111 24
Q ss_pred EcCCHHHHHHHhhh
Q 028256 182 SAQTAHELICKLEV 195 (211)
Q Consensus 182 ~~~d~ee~~~~l~~ 195 (211)
.+.|++.+++.+++
T Consensus 117 ~v~d~~~~~~~i~~ 130 (147)
T PF04016_consen 117 RVVDPEKVLRAISE 130 (147)
T ss_dssp EES-HHHHHHHHCT
T ss_pred EEeCHHHHHHHHHc
Confidence 48899999999976
No 210
>PRK06703 flavodoxin; Provisional
Probab=39.42 E-value=75 Score=24.54 Aligned_cols=14 Identities=7% Similarity=0.306 Sum_probs=7.6
Q ss_pred HHHHHHhcCCeEEE
Q 028256 66 VSQAVYDGGRHVLG 79 (211)
Q Consensus 66 ~a~gA~~~gG~viG 79 (211)
+.+-..+.|..+++
T Consensus 105 l~~~l~~~G~~~~~ 118 (151)
T PRK06703 105 FEERLVERGAELVQ 118 (151)
T ss_pred HHHHHHHCCCEEcc
Confidence 44444556666655
No 211
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=39.42 E-value=1.4e+02 Score=25.14 Aligned_cols=107 Identities=12% Similarity=0.095 Sum_probs=55.0
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeE--EecCCCCChhHHHHHHHHhcCCeEEEEecCcCCCCCCCC---
Q 028256 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDL--VYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITG--- 92 (211)
Q Consensus 18 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~l--v~GGg~~GlM~a~a~gA~~~gG~viGv~P~~~~~~e~~~--- 92 (211)
.+.|.|+=+. ++ +.|.++.+.|.+.|+++ ||=-.+ +..+++.+-..+.....||.-. .+. .+...
T Consensus 4 ~~vv~Vir~~----~~---~~a~~ia~al~~gGi~~iEit~~tp-~a~~~I~~l~~~~~~~~vGAGT-Vl~-~e~a~~ai 73 (201)
T PRK06015 4 QPVIPVLLID----DV---EHAVPLARALAAGGLPAIEITLRTP-AALDAIRAVAAEVEEAIVGAGT-ILN-AKQFEDAA 73 (201)
T ss_pred CCEEEEEEcC----CH---HHHHHHHHHHHHCCCCEEEEeCCCc-cHHHHHHHHHHHCCCCEEeeEe-CcC-HHHHHHHH
Confidence 3456776321 22 45778888888888876 333345 7777776665566666777621 111 11110
Q ss_pred CCCceeeecCCHHHHHHHHHHhcCEEEEecCCcCcHHHHHHHHH
Q 028256 93 DTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVIT 136 (211)
Q Consensus 93 ~~~~~~~~~~~~~~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~ 136 (211)
.-=.+.++.+.+...-... .....+.++||- -|..|+..+|.
T Consensus 74 ~aGA~FivSP~~~~~vi~~-a~~~~i~~iPG~-~TptEi~~A~~ 115 (201)
T PRK06015 74 KAGSRFIVSPGTTQELLAA-ANDSDVPLLPGA-ATPSEVMALRE 115 (201)
T ss_pred HcCCCEEECCCCCHHHHHH-HHHcCCCEeCCC-CCHHHHHHHHH
Confidence 0001334444443222222 222336666653 57777777665
No 212
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=39.10 E-value=79 Score=29.78 Aligned_cols=77 Identities=18% Similarity=0.092 Sum_probs=49.6
Q ss_pred EEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeC-CccchhHHH-------HHHHHHHcCCCCcccccceEEcCCHHHH
Q 028256 118 FIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV-DGYYNSLLS-------FIDKAVDEGFIAPAARYIIVSAQTAHEL 189 (211)
Q Consensus 118 ~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~-~g~~~~l~~-------~l~~~~~~g~i~~~~~~~i~~~~d~ee~ 189 (211)
+.++-||.+-..... . + ..+|=|++.+ +..||++.+ .++.++ +|+. +. .+-.|.++.
T Consensus 160 ~~~lvGG~~m~~q~~---~---L--~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LV----lDEA--Dr-lLd~dF~~~ 224 (476)
T KOG0330|consen 160 VAVLVGGMDMMLQAN---Q---L--SKKPHILVATPGRLWDHLENTKGFSLEQLKFLV----LDEA--DR-LLDMDFEEE 224 (476)
T ss_pred EEEEecCchHHHHHH---H---h--hcCCCEEEeCcHHHHHHHHhccCccHHHhHHHh----hchH--Hh-hhhhhhHHH
Confidence 567788877654322 2 1 4678777755 446887762 122222 2222 22 336788899
Q ss_pred HHHhhhhccCceeEEeeeec
Q 028256 190 ICKLEVFFFFFFWLFSFSVL 209 (211)
Q Consensus 190 ~~~l~~~~~~~~~~~~~~~~ 209 (211)
+++|-+..|..-.+|=||-|
T Consensus 225 ld~ILk~ip~erqt~LfsAT 244 (476)
T KOG0330|consen 225 LDYILKVIPRERQTFLFSAT 244 (476)
T ss_pred HHHHHHhcCccceEEEEEee
Confidence 99999999999999999975
No 213
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=39.10 E-value=1.5e+02 Score=25.48 Aligned_cols=41 Identities=32% Similarity=0.346 Sum_probs=23.0
Q ss_pred HHHhcCEEEEecCCcCcHHHHHH--HHHHHH-hCCCCCcEEEEeCCcc
Q 028256 111 MARQADAFIALPGGYGTLEELLE--VITWAQ-LGIHDKPVGLLNVDGY 155 (211)
Q Consensus 111 m~~~sDa~IvlpGG~GTL~El~~--~~~~~~-lg~~~kPiill~~~g~ 155 (211)
++..+|++++ +.||+.+-.. +....+ ...+++|++ +++.+.
T Consensus 51 ~~~~~~alvi---~~G~l~~~~~~~i~~~~~~a~~~~~pvV-lDpv~~ 94 (263)
T PRK09355 51 MAKIAGALVI---NIGTLTEERIEAMLAAGKIANEAGKPVV-LDPVGV 94 (263)
T ss_pred HHHhcCceEE---eCCCCCHHHHHHHHHHHHHHHhcCCCEE-ECCccc
Confidence 4578899888 5555544322 222211 233578965 677654
No 214
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=39.06 E-value=89 Score=27.10 Aligned_cols=69 Identities=22% Similarity=0.320 Sum_probs=39.7
Q ss_pred HHHHHHhcCEEEEe--cCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCCCcccccceEEcCC
Q 028256 108 KAEMARQADAFIAL--PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQT 185 (211)
Q Consensus 108 k~~m~~~sDa~Ivl--pGG~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d 185 (211)
...+...||++|.- ..|+|. =++|+++ .++||+..+..| ...+ +.+ .....+.-.+|
T Consensus 296 ~~~~~~~adi~l~ps~~e~~~~--~l~Ea~a------~G~Pvi~s~~~~-~~e~-------i~~-----~~~g~~~~~~~ 354 (398)
T cd03800 296 LPALYRAADVFVNPALYEPFGL--TALEAMA------CGLPVVATAVGG-PRDI-------VVD-----GVTGLLVDPRD 354 (398)
T ss_pred HHHHHHhCCEEEecccccccCc--HHHHHHh------cCCCEEECCCCC-HHHH-------ccC-----CCCeEEeCCCC
Confidence 34467789987643 244453 2667776 789998876543 2222 111 11122333457
Q ss_pred HHHHHHHhhhhc
Q 028256 186 AHELICKLEVFF 197 (211)
Q Consensus 186 ~ee~~~~l~~~~ 197 (211)
++++.+.|.+..
T Consensus 355 ~~~l~~~i~~l~ 366 (398)
T cd03800 355 PEALAAALRRLL 366 (398)
T ss_pred HHHHHHHHHHHH
Confidence 888888887654
No 215
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=39.01 E-value=1.4e+02 Score=24.99 Aligned_cols=72 Identities=15% Similarity=0.284 Sum_probs=43.0
Q ss_pred HHHHHHHHhcCEEEEe---cCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCCCcccccceEE
Q 028256 106 QRKAEMARQADAFIAL---PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVS 182 (211)
Q Consensus 106 ~Rk~~m~~~sDa~Ivl---pGG~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~ 182 (211)
+...-++..||++|.- ..|+|. =++|+++ .++|++..+..+. ..++ .+ .....+.-
T Consensus 254 ~~~~~~~~~ad~~i~ps~~~e~~~~--~~~Ea~a------~G~Pvi~~~~~~~-~e~i-------~~-----~~~g~~~~ 312 (359)
T cd03823 254 EEIDDFYAEIDVLVVPSIWPENFPL--VIREALA------AGVPVIASDIGGM-AELV-------RD-----GVNGLLFP 312 (359)
T ss_pred HHHHHHHHhCCEEEEcCcccCCCCh--HHHHHHH------CCCCEEECCCCCH-HHHh-------cC-----CCcEEEEC
Confidence 4445577889987753 234443 3566676 7899998776432 2221 11 11233444
Q ss_pred cCCHHHHHHHhhhhcc
Q 028256 183 AQTAHELICKLEVFFF 198 (211)
Q Consensus 183 ~~d~ee~~~~l~~~~~ 198 (211)
.+|++++.+.|.+...
T Consensus 313 ~~d~~~l~~~i~~l~~ 328 (359)
T cd03823 313 PGDAEDLAAALERLID 328 (359)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 5678888888877653
No 216
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=38.94 E-value=2e+02 Score=24.19 Aligned_cols=107 Identities=19% Similarity=0.170 Sum_probs=57.0
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeE--EecCCCCChhHHHHHHHHhcCCeEEEEecCcCCCCCCCC---
Q 028256 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDL--VYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITG--- 92 (211)
Q Consensus 18 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~l--v~GGg~~GlM~a~a~gA~~~gG~viGv~P~~~~~~e~~~--- 92 (211)
.+.|+|+=+. ++ +.|.++++.|.+.|+++ |+=-.+ +..++..+-..+.+...||.-. .+.+ +...
T Consensus 8 ~~liaVlr~~----~~---e~a~~~~~al~~~Gi~~iEit~~t~-~a~~~i~~l~~~~~~~~vGAGT-Vl~~-~~a~~a~ 77 (204)
T TIGR01182 8 AKIVPVIRID----DV---DDALPLAKALIEGGLRVLEVTLRTP-VALDAIRLLRKEVPDALIGAGT-VLNP-EQLRQAV 77 (204)
T ss_pred CCEEEEEecC----CH---HHHHHHHHHHHHcCCCEEEEeCCCc-cHHHHHHHHHHHCCCCEEEEEe-CCCH-HHHHHHH
Confidence 4567777321 22 45678888888888876 333334 6667666665556666677621 1111 1110
Q ss_pred CCCceeeecCCHHHHHHHHHHhcCEEEEecCCcCcHHHHHHHHH
Q 028256 93 DTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVIT 136 (211)
Q Consensus 93 ~~~~~~~~~~~~~~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~ 136 (211)
.-=.+.++.+.+.. ...-...-..+.++| |.-|..|+..++.
T Consensus 78 ~aGA~FivsP~~~~-~v~~~~~~~~i~~iP-G~~TptEi~~A~~ 119 (204)
T TIGR01182 78 DAGAQFIVSPGLTP-ELAKHAQDHGIPIIP-GVATPSEIMLALE 119 (204)
T ss_pred HcCCCEEECCCCCH-HHHHHHHHcCCcEEC-CCCCHHHHHHHHH
Confidence 00023444444422 211112223467777 6678888888776
No 217
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=38.76 E-value=1e+02 Score=26.28 Aligned_cols=70 Identities=11% Similarity=0.082 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCCCcccccceEEcC
Q 028256 105 HQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQ 184 (211)
Q Consensus 105 ~~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~ 184 (211)
..+....++.||.+||++=. -++.-+..+...-..+.|++++|.+- .+ + +.....-+.+..
T Consensus 166 ~~~~~~~~~~aDlllvvGTS----l~V~pa~~l~~~~~~~~~~v~iN~~~--~~------------~-~~~~~~d~~~~~ 226 (235)
T cd01408 166 FSHMEEDKEEADLLIVIGTS----LKVAPFASLPSRVPSEVPRVLINREP--VG------------H-LGKRPFDVALLG 226 (235)
T ss_pred HHHHHHHHhcCCEEEEECCC----CeeccHHHHHHHHhCCCcEEEEeCCC--CC------------C-CCCCCcCEEEeC
Confidence 45665667889998886433 22222222222222468999999751 01 0 000112367788
Q ss_pred CHHHHHHHh
Q 028256 185 TAHELICKL 193 (211)
Q Consensus 185 d~ee~~~~l 193 (211)
+.+|+++.|
T Consensus 227 ~~~~~l~~~ 235 (235)
T cd01408 227 DCDDGVREL 235 (235)
T ss_pred CHHHHHHhC
Confidence 888888754
No 218
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=38.69 E-value=1.4e+02 Score=25.92 Aligned_cols=69 Identities=19% Similarity=0.120 Sum_probs=35.7
Q ss_pred EEEEecCCcCcHHHHHHHHHHHHhCC-CCCcEEEEe---CCccchhHHHHHHHHHHcCCCCcccccceE--EcCCHHHHH
Q 028256 117 AFIALPGGYGTLEELLEVITWAQLGI-HDKPVGLLN---VDGYYNSLLSFIDKAVDEGFIAPAARYIIV--SAQTAHELI 190 (211)
Q Consensus 117 a~IvlpGG~GTL~El~~~~~~~~lg~-~~kPiill~---~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~--~~~d~ee~~ 190 (211)
|+|+|-||.||-- |. .+||.+=+. ..-+.+-..+.+..+...- -.......++ ...+.++..
T Consensus 2 a~viLaGG~GtRL-----------g~~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~-~~~~~Ip~~imts~~t~~~t~ 69 (266)
T cd04180 2 AVVLLAGGLGTRL-----------GKDGPKSSTDVGLPSGQCFLQLIGEKILTLQEID-LYSCKIPEQLMNSKYTHEKTQ 69 (266)
T ss_pred EEEEECCCCcccc-----------CCCCCceeeeecCCCCCcHHHHHHHHHHHHHHHh-hcCCCCCEEEEcCchhHHHHH
Confidence 6899999999932 32 466666433 2234555555544332200 0000112222 234566788
Q ss_pred HHhhhhc
Q 028256 191 CKLEVFF 197 (211)
Q Consensus 191 ~~l~~~~ 197 (211)
++++++.
T Consensus 70 ~~l~~~~ 76 (266)
T cd04180 70 CYFEKIN 76 (266)
T ss_pred HHHHHcC
Confidence 8888765
No 219
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=38.65 E-value=1.4e+02 Score=25.97 Aligned_cols=68 Identities=22% Similarity=0.247 Sum_probs=40.4
Q ss_pred HHHHHHhcCEEEEec--CCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCCCcccccceEEcCC
Q 028256 108 KAEMARQADAFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQT 185 (211)
Q Consensus 108 k~~m~~~sDa~Ivlp--GG~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d 185 (211)
...+...||+++..+ -|+|.. +.|+++ .++||+..+..|. .+++. ++ ..-+.+..|
T Consensus 293 ~~~~l~~ad~~l~~s~~E~~g~~--~lEAma------~G~PvI~s~~~~~-~e~i~-------~~------~~g~~~~~~ 350 (392)
T cd03805 293 KELLLSSARALLYTPSNEHFGIV--PLEAMY------AGKPVIACNSGGP-LETVV-------DG------ETGFLCEPT 350 (392)
T ss_pred HHHHHhhCeEEEECCCcCCCCch--HHHHHH------cCCCEEEECCCCc-HHHhc-------cC------CceEEeCCC
Confidence 345678899887643 334442 467777 7899999887542 22211 11 112334567
Q ss_pred HHHHHHHhhhhc
Q 028256 186 AHELICKLEVFF 197 (211)
Q Consensus 186 ~ee~~~~l~~~~ 197 (211)
++++.+.|.+..
T Consensus 351 ~~~~a~~i~~l~ 362 (392)
T cd03805 351 PEEFAEAMLKLA 362 (392)
T ss_pred HHHHHHHHHHHH
Confidence 888777776543
No 220
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=38.62 E-value=95 Score=27.00 Aligned_cols=47 Identities=21% Similarity=0.283 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHHHHHHHcCCeEEecCCCCChhHHHHHHHHhcCCeEE
Q 028256 32 SPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVL 78 (211)
Q Consensus 32 ~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~a~gA~~~gG~vi 78 (211)
.-.|.+.|-.+.+-+|.+|-.+.+=|-..|-++-+.+.|.++||..+
T Consensus 90 T~~~Lr~A~~fVa~vA~r~GiILFv~tn~~~~~~ve~aA~r~~gy~~ 136 (251)
T KOG0832|consen 90 TASYLRRALNFVAHVAHRGGIILFVGTNNGFKDLVERAARRAGGYSH 136 (251)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCcchHHHHHHHHHHhcCcee
Confidence 35789999999999998755554444466999999999999998765
No 221
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=38.57 E-value=38 Score=29.25 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=15.8
Q ss_pred EEecCCCCChhHHHHHHHHhcCCeEE
Q 028256 53 LVYGGGSIGLMGLVSQAVYDGGRHVL 78 (211)
Q Consensus 53 lv~GGg~~GlM~a~a~gA~~~gG~vi 78 (211)
|+|||+. |+=-+.++...+.|-.||
T Consensus 9 LITGG~s-GIGl~lak~f~elgN~VI 33 (245)
T COG3967 9 LITGGAS-GIGLALAKRFLELGNTVI 33 (245)
T ss_pred EEeCCcc-hhhHHHHHHHHHhCCEEE
Confidence 4566654 766666666666666654
No 222
>PRK07308 flavodoxin; Validated
Probab=38.52 E-value=43 Score=25.79 Aligned_cols=29 Identities=17% Similarity=0.078 Sum_probs=17.6
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 028256 20 RVCVFCGSSPGKSPSYQLAAIQLGKQLVERNI 51 (211)
Q Consensus 20 ~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~ 51 (211)
.|.|+.+|..++.. +.|+.+++.|.+.|+
T Consensus 3 ~~~IvY~S~tGnTe---~iA~~ia~~l~~~g~ 31 (146)
T PRK07308 3 LAKIVYASMTGNTE---EIADIVADKLRELGH 31 (146)
T ss_pred eEEEEEECCCchHH---HHHHHHHHHHHhCCC
Confidence 46666677776433 456677776665544
No 223
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=38.33 E-value=42 Score=29.44 Aligned_cols=71 Identities=14% Similarity=0.168 Sum_probs=45.6
Q ss_pred HHHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHhC-CCCCcEEEEeCCcc-chhHHHHHHHHHHcCCCCcccccceEE
Q 028256 105 HQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLG-IHDKPVGLLNVDGY-YNSLLSFIDKAVDEGFIAPAARYIIVS 182 (211)
Q Consensus 105 ~~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg-~~~kPiill~~~g~-~~~l~~~l~~~~~~g~i~~~~~~~i~~ 182 (211)
..|....++.+|.+|+ +||--.+.-++.+.+.- .++.|++++|.+.. +++. -.+.+
T Consensus 205 ~~~a~~~~~~~Dlllv----vGTSl~V~p~~~~~~~a~~~g~~~i~IN~~~t~~~~~------------------~~~~i 262 (285)
T PRK05333 205 VAAARAALDAADAVLV----VGSSLMVYSGYRFCVWAAQQGKPIAALNLGRTRADPL------------------LTLKV 262 (285)
T ss_pred HHHHHHHHhcCCEEEE----ECcCceecchhhhHHHHHHCCCeEEEECCCCCCCCcc------------------eeEEE
Confidence 4566667788998888 66655555444333322 35679999997521 1111 13678
Q ss_pred cCCHHHHHHHhhhhc
Q 028256 183 AQTAHELICKLEVFF 197 (211)
Q Consensus 183 ~~d~ee~~~~l~~~~ 197 (211)
..+..|++..|.+..
T Consensus 263 ~g~~~evL~~l~~~l 277 (285)
T PRK05333 263 EASCAQALAALVARL 277 (285)
T ss_pred eCCHHHHHHHHHHHh
Confidence 889999999996644
No 224
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=38.26 E-value=43 Score=29.02 Aligned_cols=38 Identities=21% Similarity=0.198 Sum_probs=25.4
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEecC
Q 028256 20 RVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGG 57 (211)
Q Consensus 20 ~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GG 57 (211)
+|+|+||......+.=...++.+-+.|.+.||.++.-.
T Consensus 1 ~~~~~~gg~s~e~~~s~~s~~~i~~al~~~g~~v~~i~ 38 (315)
T TIGR01205 1 RVAVLFGGKSAEHEISLVSAAAVLKALRDLGYDVYPVD 38 (315)
T ss_pred CEEEEeCCCCCCeeeeHHHHHHHHHHHhhcCCEEEEEe
Confidence 36666665544333224678899999999999875444
No 225
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=38.16 E-value=72 Score=24.38 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=19.9
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeE
Q 028256 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDL 53 (211)
Q Consensus 19 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~l 53 (211)
|+|.++.||...+ ..-...|+.+.+.+.+.|+.+
T Consensus 1 Mkilii~gS~r~~-~~t~~l~~~~~~~l~~~g~e~ 34 (152)
T PF03358_consen 1 MKILIINGSPRKN-SNTRKLAEAVAEQLEEAGAEV 34 (152)
T ss_dssp -EEEEEESSSSTT-SHHHHHHHHHHHHHHHTTEEE
T ss_pred CEEEEEECcCCCC-CHHHHHHHHHHHHHHHcCCEE
Confidence 3566666665432 333466777777777665544
No 226
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=37.84 E-value=83 Score=24.47 Aligned_cols=58 Identities=22% Similarity=0.142 Sum_probs=32.9
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEE------ecCCCCChhHHHHHHHHhcCCeEEEEe
Q 028256 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV------YGGGSIGLMGLVSQAVYDGGRHVLGVI 81 (211)
Q Consensus 19 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv------~GGg~~GlM~a~a~gA~~~gG~viGv~ 81 (211)
+.|+|+|.+..|. ...++.|.+.|.++|+.+. .|.......+.=..-. ++|...+.+.
T Consensus 1 pvv~VvG~~~sGK----TTl~~~Li~~l~~~g~~v~~ik~~~~g~~~~d~pG~Dt~r~-~aGA~~~~~~ 64 (140)
T PF03205_consen 1 PVVQVVGPKNSGK----TTLIRKLINELKRRGYRVAVIKHTDHGQFEIDPPGTDTWRF-KAGADVVLVS 64 (140)
T ss_dssp -EEEEEESTTSSH----HHHHHHHHHHHHHTT--EEEEEE-STTSTTCSTTCHHHHHH-HCT-SEEEEE
T ss_pred CEEEEECCCCCCH----HHHHHHHHHHHhHcCCceEEEEEccCCCcccCCCCcccccc-cccceEEEEE
Confidence 4789998877762 2457889999999999875 1222223333333334 6666555543
No 227
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=37.81 E-value=1.8e+02 Score=26.42 Aligned_cols=72 Identities=19% Similarity=0.229 Sum_probs=43.0
Q ss_pred HHHHHHHHhcCEEEEe-cC--CcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCCCcccccceEE
Q 028256 106 QRKAEMARQADAFIAL-PG--GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVS 182 (211)
Q Consensus 106 ~Rk~~m~~~sDa~Ivl-pG--G~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~ 182 (211)
+....++..||++|.+ +. |.|--.-++|+++ .++||+..+..| ..++ ++++- .. +.
T Consensus 306 ~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama------~G~PVI~s~~~~-~~ei-------v~~~~-----~G-~l- 364 (415)
T cd03816 306 EDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFG------CGLPVCALDFKC-IDEL-------VKHGE-----NG-LV- 364 (415)
T ss_pred HHHHHHHHhCCEEEEccccccccCCcHHHHHHHH------cCCCEEEeCCCC-HHHH-------hcCCC-----CE-EE-
Confidence 4444577899999853 22 2333445777777 799999977643 2222 22211 11 22
Q ss_pred cCCHHHHHHHhhhhcc
Q 028256 183 AQTAHELICKLEVFFF 198 (211)
Q Consensus 183 ~~d~ee~~~~l~~~~~ 198 (211)
++|++++.+.|.+...
T Consensus 365 v~d~~~la~~i~~ll~ 380 (415)
T cd03816 365 FGDSEELAEQLIDLLS 380 (415)
T ss_pred ECCHHHHHHHHHHHHh
Confidence 2689999888876643
No 228
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.75 E-value=1.6e+02 Score=25.72 Aligned_cols=28 Identities=18% Similarity=0.361 Sum_probs=17.9
Q ss_pred CCeEEecCCCCChhHHHHHHHHhcCCeEEEE
Q 028256 50 NIDLVYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (211)
Q Consensus 50 g~~lv~GGg~~GlM~a~a~gA~~~gG~viGv 80 (211)
.+.++.|| . |.|-.+++ ....+-.++||
T Consensus 59 d~vi~iGG-D-GTlL~a~~-~~~~~~pi~gI 86 (277)
T PRK03708 59 DFIIAIGG-D-GTILRIEH-KTKKDIPILGI 86 (277)
T ss_pred CEEEEEeC-c-HHHHHHHH-hcCCCCeEEEE
Confidence 44555555 5 98776666 66666667776
No 229
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=37.51 E-value=1.5e+02 Score=26.86 Aligned_cols=71 Identities=25% Similarity=0.296 Sum_probs=41.3
Q ss_pred HHHHHHhcCEEEEec--CC----cCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCCCcccccceE
Q 028256 108 KAEMARQADAFIALP--GG----YGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIV 181 (211)
Q Consensus 108 k~~m~~~sDa~Ivlp--GG----~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~ 181 (211)
-..++..||++|.-. +. -|.-.=+.|+++ .++|||..+.+|. .++ +. ......+.
T Consensus 292 l~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma------~G~PVI~t~~~g~-~E~-------v~-----~~~~G~lv 352 (406)
T PRK15427 292 VKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMA------VGIPVVSTLHSGI-PEL-------VE-----ADKSGWLV 352 (406)
T ss_pred HHHHHHhCCEEEECCccCCCCCccCccHHHHHHHh------CCCCEEEeCCCCc-hhh-------hc-----CCCceEEe
Confidence 345678899887532 11 122335677777 7999999877653 222 11 11122233
Q ss_pred EcCCHHHHHHHhhhhc
Q 028256 182 SAQTAHELICKLEVFF 197 (211)
Q Consensus 182 ~~~d~ee~~~~l~~~~ 197 (211)
-.+|++++.+.|.++.
T Consensus 353 ~~~d~~~la~ai~~l~ 368 (406)
T PRK15427 353 PENDAQALAQRLAAFS 368 (406)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 3468888888877654
No 230
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=37.51 E-value=3.3e+02 Score=24.96 Aligned_cols=106 Identities=11% Similarity=0.029 Sum_probs=55.2
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHcCCeE-----EecCCCCCh-------------hHHHHHHHHhcC----CeEEEE
Q 028256 23 VFCGSSPGKSPSYQLAAIQLGKQLVERNIDL-----VYGGGSIGL-------------MGLVSQAVYDGG----RHVLGV 80 (211)
Q Consensus 23 Vfggs~~~~~~~~~~~A~~lG~~la~~g~~l-----v~GGg~~Gl-------------M~a~a~gA~~~g----G~viGv 80 (211)
|+...|..+-++-.+.++++-+.....|..| ..||...|+ .+.+.+=+.+.| -..+.|
T Consensus 125 VMiDgS~l~~eeNi~~T~~vve~Ah~~gi~VEaElG~igG~ed~~~~~~~~~~~~yT~Peea~~Fv~~Tg~i~pvD~LAv 204 (340)
T cd00453 125 HMIDLSEESLQENIEICSKYLERMSKIGMTLEIELGCTGGEEDGVDNSHMDASALYTQPEDVDYAYTELSKISPRFTIAA 204 (340)
T ss_pred EEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEecCCccCCcccccccccccCCCHHHHHHHHHHhCCCCcceEEee
Confidence 3334443444566678888888888888877 445554452 233333344445 222322
Q ss_pred ecCcCCCCCCCCCCCceeeecCCHHHHHHHHHHhc---------CEEEEecCCcCcHHHHHHHH
Q 028256 81 IPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQA---------DAFIALPGGYGTLEELLEVI 135 (211)
Q Consensus 81 ~P~~~~~~e~~~~~~~~~~~~~~~~~Rk~~m~~~s---------Da~IvlpGG~GTL~El~~~~ 135 (211)
.-.. .|-.|..-...-+ ++|.+.+-+.. +..+||-||+|+-+|-+...
T Consensus 205 siGt------~HG~Yk~g~p~L~-~~~L~~i~~~~~~~~gl~~~~~pLVlHGgSG~~~e~~~~a 261 (340)
T cd00453 205 SFGN------VHGVYKKGNVVLT-PTILRDSQEYVSKKHNLPHNSLNFVFHGGSGSTAQEIKDS 261 (340)
T ss_pred ecCc------cccCCCCCCCccC-HHHHHHHHHHHHhhcccCCCCCceEEeCCCCCCHHHHHHH
Confidence 1000 0100100000112 34444444443 78899999999998887644
No 231
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=37.41 E-value=54 Score=24.99 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=17.1
Q ss_pred eEEecCCCCChhHHHHHHHHhcCCeEEEE
Q 028256 52 DLVYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (211)
Q Consensus 52 ~lv~GGg~~GlM~a~a~gA~~~gG~viGv 80 (211)
.||+||+. |+=.++++...+.|+.++.+
T Consensus 3 ~lItGa~~-giG~~~a~~l~~~g~~~v~~ 30 (167)
T PF00106_consen 3 VLITGASS-GIGRALARALARRGARVVIL 30 (167)
T ss_dssp EEEETTTS-HHHHHHHHHHHHTTTEEEEE
T ss_pred EEEECCCC-HHHHHHHHHHHhcCceEEEE
Confidence 46666654 66666666666666544443
No 232
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=37.26 E-value=3e+02 Score=24.40 Aligned_cols=101 Identities=15% Similarity=0.102 Sum_probs=55.3
Q ss_pred CHHHHHHHHHHHHHHHHcCCeE-----EecCCCCC---------hhHHHHHHHHhcCCeEEEEecCcCCCCCCCCCCCce
Q 028256 32 SPSYQLAAIQLGKQLVERNIDL-----VYGGGSIG---------LMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGE 97 (211)
Q Consensus 32 ~~~~~~~A~~lG~~la~~g~~l-----v~GGg~~G---------lM~a~a~gA~~~gG~viGv~P~~~~~~e~~~~~~~~ 97 (211)
-++-.+.++++.+..-..|..| ..||...| =.+.+.+=+.+.|-..+.|.-... |-.|..
T Consensus 113 ~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~~TgvD~LAvaiGt~------HG~Y~~ 186 (285)
T PRK07709 113 FEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCLAPALGSV------HGPYKG 186 (285)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHHHhCCCEEEEeeccc------ccCcCC
Confidence 4555677777777777777766 22443323 123344444445555444411110 101100
Q ss_pred eeecCCHHHHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHhCC
Q 028256 98 VKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGI 142 (211)
Q Consensus 98 ~~~~~~~~~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~ 142 (211)
...-+ ++|.+.+-+..|.-+||-||+|+-+|-+... ..+|.
T Consensus 187 -~p~L~-~~~L~~I~~~~~iPLVLHGgSG~~~e~~~~a--i~~Gi 227 (285)
T PRK07709 187 -EPNLG-FAEMEQVRDFTGVPLVLHGGTGIPTADIEKA--ISLGT 227 (285)
T ss_pred -CCccC-HHHHHHHHHHHCCCEEEeCCCCCCHHHHHHH--HHcCC
Confidence 00012 4677777777898899999999998876543 34454
No 233
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=37.18 E-value=2.9e+02 Score=24.29 Aligned_cols=98 Identities=12% Similarity=0.027 Sum_probs=55.0
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCeEE-----ecCCCC-----C----hhHHHHHHHHhcCCeEEEEecCcCCCCCCCCCCC
Q 028256 30 GKSPSYQLAAIQLGKQLVERNIDLV-----YGGGSI-----G----LMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTV 95 (211)
Q Consensus 30 ~~~~~~~~~A~~lG~~la~~g~~lv-----~GGg~~-----G----lM~a~a~gA~~~gG~viGv~P~~~~~~e~~~~~~ 95 (211)
.+..+..+.++++-+...+.|..+= -||... | =.+.+.+.+.+.|-..+++-.....+.-...+.
T Consensus 108 ~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~~tg~DyLAvaiG~~hg~~~~~~~- 186 (281)
T PRK06806 108 LPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAEETDVDALAVAIGNAHGMYNGDPN- 186 (281)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCcccccceeCCHHHHHHHHHhhCCCEEEEccCCCCCCCCCCCc-
Confidence 3456777888888888888777652 232211 1 123333333445778888833222221000011
Q ss_pred ceeeecCCHHHHHHHHHHhcCEEEEecCCcC-cHHHHHHHH
Q 028256 96 GEVKAVSGMHQRKAEMARQADAFIALPGGYG-TLEELLEVI 135 (211)
Q Consensus 96 ~~~~~~~~~~~Rk~~m~~~sDa~IvlpGG~G-TL~El~~~~ 135 (211)
-+ .+|-+.+.+..+.-+|+-||+| |.+++-.+.
T Consensus 187 ------l~-~~~L~~i~~~~~iPlV~hG~SGI~~e~~~~~i 220 (281)
T PRK06806 187 ------LR-FDRLQEINDVVHIPLVLHGGSGISPEDFKKCI 220 (281)
T ss_pred ------cC-HHHHHHHHHhcCCCEEEECCCCCCHHHHHHHH
Confidence 11 4566666777788899999999 555555443
No 234
>PRK13059 putative lipid kinase; Reviewed
Probab=37.06 E-value=1.4e+02 Score=26.03 Aligned_cols=42 Identities=31% Similarity=0.652 Sum_probs=26.5
Q ss_pred hcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHH
Q 028256 114 QADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLL 160 (211)
Q Consensus 114 ~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~ 160 (211)
..| .|+.-||=||++|+...+. +.+ .+.|+.++-. |=.+++-
T Consensus 56 ~~d-~vi~~GGDGTv~evv~gl~--~~~-~~~~lgviP~-GTgNdfA 97 (295)
T PRK13059 56 SYK-YILIAGGDGTVDNVVNAMK--KLN-IDLPIGILPV-GTANDFA 97 (295)
T ss_pred CCC-EEEEECCccHHHHHHHHHH--hcC-CCCcEEEECC-CCHhHHH
Confidence 345 6678899999999987663 221 2467887732 3334443
No 235
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=36.93 E-value=3e+02 Score=24.34 Aligned_cols=106 Identities=18% Similarity=0.103 Sum_probs=58.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCeE-----EecCCCCChh-----------HHHHHHHHhcCCeEEEEecCcCCCCC
Q 028256 26 GSSPGKSPSYQLAAIQLGKQLVERNIDL-----VYGGGSIGLM-----------GLVSQAVYDGGRHVLGVIPKTLMPRE 89 (211)
Q Consensus 26 gs~~~~~~~~~~~A~~lG~~la~~g~~l-----v~GGg~~GlM-----------~a~a~gA~~~gG~viGv~P~~~~~~e 89 (211)
..|.-+-++-.+.++++.+.....|..| ..||...|+. +.+.+=+.+.|-..+.|.-...
T Consensus 102 DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~---- 177 (282)
T TIGR01858 102 DGSHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFVEATGVDSLAVAIGTA---- 177 (282)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccchhccCCHHHHHHHHHHHCcCEEecccCcc----
Confidence 3333334556677888888887778766 2344343421 2333333445544444411110
Q ss_pred CCCCCCceeeecCCH-HHHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHhCC
Q 028256 90 ITGDTVGEVKAVSGM-HQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGI 142 (211)
Q Consensus 90 ~~~~~~~~~~~~~~~-~~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~ 142 (211)
|-.|.. .+.+ ++|.+-+-+..|.-+||-||+|+-+|-+... .+.|.
T Consensus 178 --HG~yk~---~p~Ldf~~L~~I~~~~~iPLVlHGgSG~~~e~~~~a--i~~Gi 224 (282)
T TIGR01858 178 --HGLYKK---TPKLDFDRLAEIREVVDVPLVLHGASDVPDEDVRRT--IELGI 224 (282)
T ss_pred --ccCcCC---CCccCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHH--HHcCC
Confidence 100000 0112 5677777777799999999999998877544 34444
No 236
>PRK13059 putative lipid kinase; Reviewed
Probab=36.75 E-value=76 Score=27.69 Aligned_cols=39 Identities=18% Similarity=0.331 Sum_probs=26.9
Q ss_pred HHHHHcCC-eEEecCCCCChhHHHHHHHHhcC-CeEEEEecC
Q 028256 44 KQLVERNI-DLVYGGGSIGLMGLVSQAVYDGG-RHVLGVIPK 83 (211)
Q Consensus 44 ~~la~~g~-~lv~GGg~~GlM~a~a~gA~~~g-G~viGv~P~ 83 (211)
+..++.++ .||..||. |.-..++.+....+ ...+||+|.
T Consensus 50 ~~~~~~~~d~vi~~GGD-GTv~evv~gl~~~~~~~~lgviP~ 90 (295)
T PRK13059 50 FKDIDESYKYILIAGGD-GTVDNVVNAMKKLNIDLPIGILPV 90 (295)
T ss_pred HHHhhcCCCEEEEECCc-cHHHHHHHHHHhcCCCCcEEEECC
Confidence 34445554 44555566 99999999888765 466999994
No 237
>PRK13937 phosphoheptose isomerase; Provisional
Probab=36.58 E-value=95 Score=25.23 Aligned_cols=31 Identities=19% Similarity=0.119 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHHHHHcCCeEEecCCCCCh
Q 028256 32 SPSYQLAAIQLGKQLVERNIDLVYGGGSIGL 62 (211)
Q Consensus 32 ~~~~~~~A~~lG~~la~~g~~lv~GGg~~Gl 62 (211)
.+...+.|+++.+.|.+.+...++|.|..++
T Consensus 21 ~~~l~~aa~~i~~~l~~a~rI~i~G~G~S~~ 51 (188)
T PRK13937 21 LEAIAKVAEALIEALANGGKILLCGNGGSAA 51 (188)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCcHhHH
Confidence 3667788999999999999999999987554
No 238
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=36.45 E-value=2.3e+02 Score=25.93 Aligned_cols=93 Identities=31% Similarity=0.329 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHH----cCCeEEecCCCCChh-HHHHHHHHhcCCeEEEEecCc-CCCCCCCCCCCceeee---cCC----
Q 028256 37 LAAIQLGKQLVE----RNIDLVYGGGSIGLM-GLVSQAVYDGGRHVLGVIPKT-LMPREITGDTVGEVKA---VSG---- 103 (211)
Q Consensus 37 ~~A~~lG~~la~----~g~~lv~GGg~~GlM-~a~a~gA~~~gG~viGv~P~~-~~~~e~~~~~~~~~~~---~~~---- 103 (211)
+.|.++..-|++ .|+.|| || ..--| +-...+=.+.-|.++|+.... ..+.+... ..++++ .+.
T Consensus 114 ~~~~~iv~GiaeGc~~ag~aLv-GG-ETAeMPg~y~~g~yDlaG~~vGvvek~~ii~g~~i~--~GDviigl~SSG~HSN 189 (345)
T COG0150 114 EVAAQIVKGIAEGCKQAGCALV-GG-ETAEMPGMYRGGDYDLAGFAVGVVEKDEIIDGSKVK--EGDVIIGLASSGLHSN 189 (345)
T ss_pred HHHHHHHHHHHHHHHHhCCEEe-cc-ccccCCCcccCCceeeeeeEEEEEEccccccccccC--CCCEEEEecCCCcCCC
Confidence 345677777764 799998 33 33333 333333466678999997633 22211111 123332 222
Q ss_pred -H-HHHHHHHHHhcCEEEEecCCcC-cHHHHHH
Q 028256 104 -M-HQRKAEMARQADAFIALPGGYG-TLEELLE 133 (211)
Q Consensus 104 -~-~~Rk~~m~~~sDa~IvlpGG~G-TL~El~~ 133 (211)
+ ..||.+....-+.---+|...| ||-|.+.
T Consensus 190 GySLvRKi~~~~~~~~~~~~~~~~g~~l~e~LL 222 (345)
T COG0150 190 GYSLVRKIIEESGLDYDDELPEELGKTLGEELL 222 (345)
T ss_pred chHHHHHHHHhcCccccccCccccccCHHHHhc
Confidence 3 3788766533333445788777 8777664
No 239
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=36.39 E-value=1.6e+02 Score=25.86 Aligned_cols=65 Identities=12% Similarity=0.157 Sum_probs=36.9
Q ss_pred HHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEE-eCCccchhHHHHHHHHHHcCCCCcccccceEEcCC
Q 028256 107 RKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLL-NVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQT 185 (211)
Q Consensus 107 Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill-~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d 185 (211)
+...++..||++|. +.| +. +.|++. .++|++.. +..+. ..+. ..| ..+.+..|
T Consensus 267 ~~~~~l~~ad~vv~-~Sg--~~--~~EA~a------~g~PvI~~~~~~~~-~e~~-------~~g-------~~~lv~~d 320 (365)
T TIGR00236 267 DFLNLAANSHLILT-DSG--GV--QEEAPS------LGKPVLVLRDTTER-PETV-------EAG-------TNKLVGTD 320 (365)
T ss_pred HHHHHHHhCCEEEE-CCh--hH--HHHHHH------cCCCEEECCCCCCC-hHHH-------hcC-------ceEEeCCC
Confidence 34456677887654 433 22 355555 68999986 33332 2221 111 12334568
Q ss_pred HHHHHHHhhhhc
Q 028256 186 AHELICKLEVFF 197 (211)
Q Consensus 186 ~ee~~~~l~~~~ 197 (211)
++++.+.|.+..
T Consensus 321 ~~~i~~ai~~ll 332 (365)
T TIGR00236 321 KENITKAAKRLL 332 (365)
T ss_pred HHHHHHHHHHHH
Confidence 999888887765
No 240
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=36.39 E-value=41 Score=23.47 Aligned_cols=41 Identities=17% Similarity=0.340 Sum_probs=33.2
Q ss_pred chhHHHHHHHHHHcCCCCcccccceEEcCCHHHHHHHhhhhc
Q 028256 156 YNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKLEVFF 197 (211)
Q Consensus 156 ~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee~~~~l~~~~ 197 (211)
|+.+..+|+.+.+.|+|. .....+.+++.-.++++.++++.
T Consensus 33 ~~~~~~yL~~L~~~gLI~-~~~~~Y~lTekG~~~l~~l~~~~ 73 (77)
T PF14947_consen 33 YSTLKKYLKELEEKGLIK-KKDGKYRLTEKGKEFLEELEELI 73 (77)
T ss_dssp HHHHHHHHHHHHHTTSEE-EETTEEEE-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCee-CCCCEEEECccHHHHHHHHHHHH
Confidence 577888899999999994 46677899999999999887754
No 241
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.23 E-value=1.1e+02 Score=27.18 Aligned_cols=34 Identities=26% Similarity=0.388 Sum_probs=23.9
Q ss_pred hcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCC
Q 028256 114 QADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD 153 (211)
Q Consensus 114 ~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~~ 153 (211)
.+| +|+.-||=||+.+.+..+. ....||+=+|.+
T Consensus 62 ~~d-~vi~~GGDGt~l~~~~~~~-----~~~~Pvlgin~G 95 (295)
T PRK01231 62 VCD-LVIVVGGDGSLLGAARALA-----RHNVPVLGINRG 95 (295)
T ss_pred CCC-EEEEEeCcHHHHHHHHHhc-----CCCCCEEEEeCC
Confidence 455 5566688999998875542 356898878774
No 242
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=36.04 E-value=92 Score=27.68 Aligned_cols=38 Identities=26% Similarity=0.233 Sum_probs=25.6
Q ss_pred HhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeC
Q 028256 113 RQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 152 (211)
Q Consensus 113 ~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~ 152 (211)
+..|+|||+.| .-||+|....+++.-- ..+|||||.+.
T Consensus 71 ~~~~GvVVtHG-TDTme~tA~~Ls~~l~-~l~kPVVlTGa 108 (313)
T PF00710_consen 71 DDYDGVVVTHG-TDTMEETAFFLSLLLD-NLDKPVVLTGA 108 (313)
T ss_dssp TTCSEEEEE---STTHHHHHHHHHHHEE-S-SSEEEEE--
T ss_pred HhcCeEEEecC-chHHHHHHHHHHHHhc-CCCCCEEEeCC
Confidence 44889888875 6999999887775332 23799999853
No 243
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=36.02 E-value=75 Score=27.28 Aligned_cols=33 Identities=33% Similarity=0.604 Sum_probs=24.3
Q ss_pred cHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHH
Q 028256 127 TLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSF 162 (211)
Q Consensus 127 TL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~ 162 (211)
||+.+++......-.-...||+|+ |||++++.+
T Consensus 78 tl~~i~emvk~ar~~gvt~PIiLm---gYYNPIl~y 110 (268)
T KOG4175|consen 78 TLNSIIEMVKEARPQGVTCPIILM---GYYNPILRY 110 (268)
T ss_pred cHHHHHHHHHHhcccCcccceeee---ecccHHHhh
Confidence 788888876544433246899998 599999875
No 244
>KOG1584 consensus Sulfotransferase [General function prediction only]
Probab=35.99 E-value=74 Score=28.51 Aligned_cols=57 Identities=21% Similarity=0.367 Sum_probs=36.6
Q ss_pred CCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCCCcccccc-eE----EcCCHHHHHHHhhhhc
Q 028256 123 GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYI-IV----SAQTAHELICKLEVFF 197 (211)
Q Consensus 123 GG~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~-i~----~~~d~ee~~~~l~~~~ 197 (211)
.+.||++|+++..+ .+ +++++ -||++++.|.+ +. +..+. +. +-.||...++.|.+|.
T Consensus 152 ~~~~~~e~~fe~F~------~G--~~~~G--p~~dHVl~~W~-~~-------~~~~VLFl~YEdmk~dp~~~ikrlaeFL 213 (297)
T KOG1584|consen 152 PGPGTFEEFFESFC------NG--VVPYG--PWWDHVLGYWE-LE-------DPKNVLFLKYEDMKADPKGEIKKLAEFL 213 (297)
T ss_pred CCCCcHHHHHHHHh------CC--cCCcC--ChHHHHHHHHH-hc-------CCCceEEEEHHHhhhCHHHHHHHHHHHh
Confidence 56788999999887 33 23333 49999999876 21 11122 22 2357777888888775
No 245
>PTZ00032 60S ribosomal protein L18; Provisional
Probab=35.98 E-value=86 Score=26.65 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHH----cCCe-EEec--C-CCCChhHHHHHHHHhcC
Q 028256 36 QLAAIQLGKQLVE----RNID-LVYG--G-GSIGLMGLVSQAVYDGG 74 (211)
Q Consensus 36 ~~~A~~lG~~la~----~g~~-lv~G--G-g~~GlM~a~a~gA~~~g 74 (211)
.+.|.++|+.||+ .|+. ||+- | =+-|-+.|.|++|+++|
T Consensus 162 ieaA~~VGk~IAerAl~kGI~kVvFDRgGy~YHGRVkALAdaARe~G 208 (211)
T PTZ00032 162 IKAAYELGKLIGRKALSKGISKVRFDRAHYKYAGKVEALAEGARAVG 208 (211)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCCCCeehhHHHHHHHHHHHcC
Confidence 4678889999887 4653 3332 2 13689999999999987
No 246
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=35.96 E-value=2.1e+02 Score=22.25 Aligned_cols=40 Identities=15% Similarity=0.096 Sum_probs=31.7
Q ss_pred HHHHHHHHHcCCeEEecCCCCChhHHHHHHHHhcCCeEEEE
Q 028256 40 IQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (211)
Q Consensus 40 ~~lG~~la~~g~~lv~GGg~~GlM~a~a~gA~~~gG~viGv 80 (211)
.-+...|..+||.++|-|-. =-.+.+.+.|.+.+-.++++
T Consensus 21 ~iv~~~lr~~G~eVi~LG~~-vp~e~i~~~a~~~~~d~V~l 60 (137)
T PRK02261 21 KILDRALTEAGFEVINLGVM-TSQEEFIDAAIETDADAILV 60 (137)
T ss_pred HHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEE
Confidence 34555666799999999843 33688899999999999999
No 247
>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=35.88 E-value=62 Score=30.29 Aligned_cols=36 Identities=31% Similarity=0.400 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHcCCeEEecCC----------CCChhHHHHHHHHhc
Q 028256 38 AAIQLGKQLVERNIDLVYGGG----------SIGLMGLVSQAVYDG 73 (211)
Q Consensus 38 ~A~~lG~~la~~g~~lv~GGg----------~~GlM~a~a~gA~~~ 73 (211)
-|+.|+..|-++||.||+||- +.|+.++.++-.++.
T Consensus 329 Nakala~~l~~~Gy~lvtgGTDnHlvLvDLr~~G~dGarvE~vle~ 374 (477)
T KOG2467|consen 329 NAKALASALISRGYKLVTGGTDNHLVLVDLRPKGVDGARVEKVLEL 374 (477)
T ss_pred HHHHHHHHHHHcCceEecCCccceEEEEeccccCCchHHHHHHHHH
Confidence 356677777889999999995 358888888887774
No 248
>COG0256 RplR Ribosomal protein L18 [Translation, ribosomal structure and biogenesis]
Probab=35.70 E-value=1.2e+02 Score=23.73 Aligned_cols=40 Identities=25% Similarity=0.446 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHH----cCCe-EEecCC---CCChhHHHHHHHHhcCC
Q 028256 36 QLAAIQLGKQLVE----RNID-LVYGGG---SIGLMGLVSQAVYDGGR 75 (211)
Q Consensus 36 ~~~A~~lG~~la~----~g~~-lv~GGg---~~GlM~a~a~gA~~~gG 75 (211)
.+.|+.+|..+|+ .|+. +|+|=+ +.|---|+++||.++|=
T Consensus 76 ~~aA~~vG~lia~ra~~kgi~~vVfdr~g~~yhgRV~Ala~~AreaGL 123 (125)
T COG0256 76 TEAAYLVGKLIAERALAKGIEEVVFDRGGYKYHGRVAALADGAREAGL 123 (125)
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCcchHHHHHHHHHHHcCc
Confidence 4677888888876 5663 455543 25788999999999873
No 249
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=35.59 E-value=72 Score=23.98 Aligned_cols=31 Identities=13% Similarity=0.135 Sum_probs=18.3
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEE
Q 028256 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV 54 (211)
Q Consensus 19 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv 54 (211)
|+|+|+|.|..... .++.+-+.|.++|+.+.
T Consensus 1 ksiAVvGaS~~~~~-----~g~~v~~~l~~~G~~v~ 31 (116)
T PF13380_consen 1 KSIAVVGASDNPGK-----FGYRVLRNLKAAGYEVY 31 (116)
T ss_dssp -EEEEET--SSTTS-----HHHHHHHHHHHTT-EEE
T ss_pred CEEEEEcccCCCCC-----hHHHHHHHHHhCCCEEE
Confidence 57999976664322 25667777777887765
No 250
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.27 E-value=1.4e+02 Score=25.80 Aligned_cols=53 Identities=17% Similarity=0.275 Sum_probs=32.5
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCe----------------EEecCCCCChhHHHHHHHHhcCCeEEEEe
Q 028256 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNID----------------LVYGGGSIGLMGLVSQAVYDGGRHVLGVI 81 (211)
Q Consensus 19 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~----------------lv~GGg~~GlM~a~a~gA~~~gG~viGv~ 81 (211)
|+++|+ .+. .-.+.+.++-+.|.++|+. +++=||. |.|=-+++.+ +-.++||-
T Consensus 1 m~~~~~--~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vi~iGGD-GT~L~a~~~~---~~Pilgin 69 (256)
T PRK14075 1 MKLGIF--YRE----EKEKEAKFLKEKISKEHEVVEFCEASASGKVTADLIIVVGGD-GTVLKAAKKV---GTPLVGFK 69 (256)
T ss_pred CEEEEE--eCc----cHHHHHHHHHHHHHHcCCeeEeecccccccCCCCEEEEECCc-HHHHHHHHHc---CCCEEEEe
Confidence 467777 222 1336677888888877642 3333456 8776555544 67788883
No 251
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=35.21 E-value=90 Score=25.28 Aligned_cols=33 Identities=18% Similarity=0.197 Sum_probs=25.2
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEE
Q 028256 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV 54 (211)
Q Consensus 18 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv 54 (211)
|+.++|.|.|..|. ....+++.+.|.++|+++.
T Consensus 2 ~~Il~ivG~k~SGK----TTLie~lv~~L~~~G~rVa 34 (161)
T COG1763 2 MKILGIVGYKNSGK----TTLIEKLVRKLKARGYRVA 34 (161)
T ss_pred CcEEEEEecCCCCh----hhHHHHHHHHHHhCCcEEE
Confidence 67789998887773 3456788889999998763
No 252
>PF12965 DUF3854: Domain of unknown function (DUF3854); InterPro: IPR024385 This is a family of uncharacterised proteins, found by clustering human gut metagenomic sequences [].
Probab=35.20 E-value=1.9e+02 Score=22.40 Aligned_cols=50 Identities=24% Similarity=0.347 Sum_probs=34.5
Q ss_pred cceEEEEeCCC--CCCCHHHHHHHHHHHHHHHHcCCeEEe-----cCCCCChhHHHHH
Q 028256 18 FKRVCVFCGSS--PGKSPSYQLAAIQLGKQLVERNIDLVY-----GGGSIGLMGLVSQ 68 (211)
Q Consensus 18 ~~~I~Vfggs~--~~~~~~~~~~A~~lG~~la~~g~~lv~-----GGg~~GlM~a~a~ 68 (211)
-+.|.|...+. ........+..+++++.|.++|+.+-. +.+. |+...++.
T Consensus 68 gr~v~iaFD~D~~~~Tn~~V~~a~~~l~~~L~~~G~~v~~~~w~~~~~K-GiDD~l~~ 124 (130)
T PF12965_consen 68 GREVYIAFDADTKPKTNKNVRRAIKRLGKLLKEAGCKVKIITWPPGEGK-GIDDLLAA 124 (130)
T ss_pred CceEEEEecCCCccchhHHHHHHHHHHHHHHHHCCCEEEEEEeCCCCCC-CHhHHHHh
Confidence 34556655665 333466778889999999999998732 4554 88887654
No 253
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=35.13 E-value=1.8e+02 Score=24.41 Aligned_cols=40 Identities=23% Similarity=0.294 Sum_probs=28.3
Q ss_pred HHHHHHhcCEEEEec---CCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCcc
Q 028256 108 KAEMARQADAFIALP---GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGY 155 (211)
Q Consensus 108 k~~m~~~sDa~Ivlp---GG~GTL~El~~~~~~~~lg~~~kPiill~~~g~ 155 (211)
...++..+|++|... .|+|. =++|+++ .++||+..+..|.
T Consensus 237 ~~~~~~~~d~~v~ps~~~E~~~~--~~lEAma------~G~PvI~~~~~~~ 279 (335)
T cd03802 237 KAELLGNARALLFPILWEEPFGL--VMIEAMA------CGTPVIAFRRGAV 279 (335)
T ss_pred HHHHHHhCcEEEeCCcccCCcch--HHHHHHh------cCCCEEEeCCCCc
Confidence 345678899888752 46665 3677777 7899999887543
No 254
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=35.11 E-value=96 Score=23.09 Aligned_cols=13 Identities=8% Similarity=0.419 Sum_probs=6.3
Q ss_pred HHHHHhcCCeEEE
Q 028256 67 SQAVYDGGRHVLG 79 (211)
Q Consensus 67 a~gA~~~gG~viG 79 (211)
.+-..+.|..+++
T Consensus 103 ~~~l~~~g~~~v~ 115 (140)
T TIGR01753 103 EERLKEAGATIIA 115 (140)
T ss_pred HHHHHHCCCEEec
Confidence 3333345666554
No 255
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=34.61 E-value=47 Score=29.81 Aligned_cols=26 Identities=38% Similarity=0.569 Sum_probs=14.4
Q ss_pred cCCeEEecCCCCChhHHHHHHHHhcCC
Q 028256 49 RNIDLVYGGGSIGLMGLVSQAVYDGGR 75 (211)
Q Consensus 49 ~g~~lv~GGg~~GlM~a~a~gA~~~gG 75 (211)
.+..|+||||. |+=++.+....+.|.
T Consensus 38 g~~vLITGgg~-GlGr~ialefa~rg~ 63 (300)
T KOG1201|consen 38 GEIVLITGGGS-GLGRLIALEFAKRGA 63 (300)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHHhCC
Confidence 34555666654 665555555555554
No 256
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.55 E-value=89 Score=27.89 Aligned_cols=118 Identities=18% Similarity=0.189 Sum_probs=65.5
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEecCCCCChhHHHHHHHHhcCCeEEEEecC-cCCCCCCCCCCCc
Q 028256 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPK-TLMPREITGDTVG 96 (211)
Q Consensus 18 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~a~gA~~~gG~viGv~P~-~~~~~e~~~~~~~ 96 (211)
|++|+|+. +.. .+...+.+.++.++|.++|+.++..--. +...+ . .. |. .....+ ++
T Consensus 1 m~~igiv~--n~~-~~~~~~~~~~l~~~L~~~g~~v~~~~~~----------~~~~~-~--~~-~~~~~~~~~-----~~ 58 (305)
T PRK02649 1 MPKAGIIY--NDG-KPLAVRTAEELQDKLEAAGWEVVRASSS----------GGILG-Y--AN-PDQPVCHTG-----ID 58 (305)
T ss_pred CCEEEEEE--cCC-CHHHHHHHHHHHHHHHHCCCEEEEecch----------hhhcC-c--cc-ccccccccc-----cc
Confidence 56799994 322 4556678899999999999998764311 11111 0 00 00 000000 00
Q ss_pred eeeecCCHHHHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCC--ccc-----hhHHHHHHHHHHc
Q 028256 97 EVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD--GYY-----NSLLSFIDKAVDE 169 (211)
Q Consensus 97 ~~~~~~~~~~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~~--g~~-----~~l~~~l~~~~~~ 169 (211)
...+ ..+.+.+|.+|+ -||=||+-..+..+. ...+||+=+|.+ ||. +++.+.++.+.+.
T Consensus 59 ----~~~~----~~~~~~~Dlvi~-iGGDGTlL~aar~~~-----~~~iPilGIN~G~lGFLt~~~~~~~~~~l~~l~~g 124 (305)
T PRK02649 59 ----QLVP----PGFDSSMKFAIV-LGGDGTVLSAARQLA-----PCGIPLLTINTGHLGFLTEAYLNQLDEAIDQVLAG 124 (305)
T ss_pred ----ccCh----hhcccCcCEEEE-EeCcHHHHHHHHHhc-----CCCCcEEEEeCCCCcccccCCHHHHHHHHHHHHcC
Confidence 0000 112234675555 578899887665443 357899888775 665 5566677777655
Q ss_pred CC
Q 028256 170 GF 171 (211)
Q Consensus 170 g~ 171 (211)
.|
T Consensus 125 ~y 126 (305)
T PRK02649 125 QY 126 (305)
T ss_pred Cc
Confidence 54
No 257
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=34.50 E-value=3.8e+02 Score=24.84 Aligned_cols=36 Identities=22% Similarity=0.304 Sum_probs=26.0
Q ss_pred HhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCC
Q 028256 113 RQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD 153 (211)
Q Consensus 113 ~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~~ 153 (211)
+.+|++|+.-.-+||-..+...+. ..++|++++...
T Consensus 62 ~~~d~ii~~~~tf~~~~~~~~~~~-----~~~~Pvll~a~~ 97 (452)
T cd00578 62 ANCDGLIVWMHTFGPAKMWIAGLS-----ELRKPVLLLATQ 97 (452)
T ss_pred cCCcEEEEcccccccHHHHHHHHH-----hcCCCEEEEeCC
Confidence 368899998888888665655432 257899998653
No 258
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=34.22 E-value=1.1e+02 Score=28.10 Aligned_cols=13 Identities=23% Similarity=0.358 Sum_probs=8.3
Q ss_pred HHhcCEEEEecCC
Q 028256 112 ARQADAFIALPGG 124 (211)
Q Consensus 112 ~~~sDa~IvlpGG 124 (211)
....|++|+-+|-
T Consensus 66 ~~~~d~vv~~~g~ 78 (450)
T PRK14106 66 LEGVDLVVVSPGV 78 (450)
T ss_pred hhcCCEEEECCCC
Confidence 3557777776653
No 259
>COG1582 FlgEa Uncharacterized protein, possibly involved in motility [Cell motility and secretion]
Probab=34.16 E-value=34 Score=23.72 Aligned_cols=24 Identities=17% Similarity=0.056 Sum_probs=20.1
Q ss_pred cccceEEcCCHHHHHHHhhhhccC
Q 028256 176 ARYIIVSAQTAHELICKLEVFFFF 199 (211)
Q Consensus 176 ~~~~i~~~~d~ee~~~~l~~~~~~ 199 (211)
....+++-+|.||+++.+.+|...
T Consensus 34 nGkkyvVkEsveEVi~kI~~y~rk 57 (67)
T COG1582 34 NGKKYVVKESVEEVINKIIEYRRK 57 (67)
T ss_pred cCcEEEEcccHHHHHHHHHHHHHH
Confidence 346688999999999999998753
No 260
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=33.96 E-value=3.4e+02 Score=24.70 Aligned_cols=64 Identities=16% Similarity=0.051 Sum_probs=45.3
Q ss_pred hhcCcceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEecCCCCChhHHHHHHHHhcCCeEEEE
Q 028256 14 LKSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (211)
Q Consensus 14 ~~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~a~gA~~~gG~viGv 80 (211)
+.+..++|+|+++++..++.. ..+++=+.+.+.|+.|+.=+-+..-+-..+..++.....+|=+
T Consensus 155 ~~Pnak~Igv~Y~p~E~ns~~---l~eelk~~A~~~Gl~vve~~v~~~ndi~~a~~~l~g~~d~i~~ 218 (322)
T COG2984 155 LLPNAKSIGVLYNPGEANSVS---LVEELKKEARKAGLEVVEAAVTSVNDIPRAVQALLGKVDVIYI 218 (322)
T ss_pred hCCCCeeEEEEeCCCCcccHH---HHHHHHHHHHHCCCEEEEEecCcccccHHHHHHhcCCCcEEEE
Confidence 555678999999888765443 4577888888899999988776566655555566655555544
No 261
>cd00458 SugarP_isomerase SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium, the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate. 6PGL converts 6-phosphoglucono-1,5-lactone to 6-phosphogluconate, the second step of the oxidative phase of the pentose phosphate pathway.
Probab=33.91 E-value=2.4e+02 Score=22.41 Aligned_cols=44 Identities=16% Similarity=0.070 Sum_probs=26.1
Q ss_pred HHhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccc
Q 028256 112 ARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYY 156 (211)
Q Consensus 112 ~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~~g~~ 156 (211)
-+...+.|+++||. |..++++.+.-......=+.|.++..+.+|
T Consensus 17 ~~~~~~~i~lsgGs-Tp~~~y~~L~~~~~~~~w~~v~~f~~DEr~ 60 (169)
T cd00458 17 EEKDDMVIGLGTGS-TPAYFYKLLGEKLKRGEISDIVGFPTDERY 60 (169)
T ss_pred HhCCCEEEEECCCc-cHHHHHHHHHhhhhhCCccceEEEECcccc
Confidence 34567889999984 666666665422211111456777777665
No 262
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=33.91 E-value=34 Score=31.56 Aligned_cols=29 Identities=31% Similarity=0.468 Sum_probs=17.9
Q ss_pred eEEecCCCCChhHHHHHHHHhcCCeEEEEec
Q 028256 52 DLVYGGGSIGLMGLVSQAVYDGGRHVLGVIP 82 (211)
Q Consensus 52 ~lv~GGg~~GlM~a~a~gA~~~gG~viGv~P 82 (211)
.||.|||+.|++-|+ .|.++|-+|+=|-+
T Consensus 2 VVVvGgG~aG~~AAi--~AAr~G~~VlLiE~ 30 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAI--AAARAGAKVLLIEK 30 (428)
T ss_dssp EEEE--SHHHHHHHH--HHHHTTS-EEEE-S
T ss_pred EEEECccHHHHHHHH--HHHHCCCEEEEEEC
Confidence 478999998887655 35567878877744
No 263
>TIGR03282 methan_mark_13 putative methanogenesis marker 13 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This metal cluster-binding family is related to nitrogenase structural protein NifD and accessory protein NifE, among others.
Probab=33.44 E-value=1.4e+02 Score=27.32 Aligned_cols=69 Identities=17% Similarity=0.260 Sum_probs=40.5
Q ss_pred CeEEecCCCCChhHHHHHHHHhcCCeEEEEecCcCCCCCCCCCCCceeeecCCHHHHHHHHHHhcCEEEE-ecCCcCcHH
Q 028256 51 IDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIA-LPGGYGTLE 129 (211)
Q Consensus 51 ~~lv~GGg~~GlM~a~a~gA~~~gG~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~Rk~~m~~~sDa~Iv-lpGG~GTL~ 129 (211)
-.+|+||.. -|-+++.+.+.......|+|+.+.. ..++.+|+..=-+-+-.....+-+ .|||+|+-.
T Consensus 53 ~DvVFGGee-KL~eaI~ea~e~y~P~lI~VvTTCv-----------seIIGDDIeaVvkE~~~giPVI~V~t~GGfGdn~ 120 (352)
T TIGR03282 53 NDFVFGASE-KLVKVIRYAEEKFKPELIGVVGTCA-----------SMIIGEDLKEAVDEADVDAEVIAVEVHAGFGDNT 120 (352)
T ss_pred CceEeCcHH-HHHHHHHHHHHhcCCCEEEEECCCc-----------hhhccCCHHHHHHHhCCCCCEEEEECCCCCccHH
Confidence 367888865 8888887777777888888865432 225666764211111112333333 368888754
Q ss_pred HH
Q 028256 130 EL 131 (211)
Q Consensus 130 El 131 (211)
+=
T Consensus 121 ~G 122 (352)
T TIGR03282 121 EG 122 (352)
T ss_pred HH
Confidence 43
No 264
>PRK00861 putative lipid kinase; Reviewed
Probab=33.42 E-value=1.8e+02 Score=25.19 Aligned_cols=30 Identities=33% Similarity=0.608 Sum_probs=22.1
Q ss_pred cCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEE
Q 028256 115 ADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLL 150 (211)
Q Consensus 115 sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill 150 (211)
.| .|+.-||=||++|+...+. ....|+.++
T Consensus 58 ~d-~vv~~GGDGTl~evv~~l~-----~~~~~lgvi 87 (300)
T PRK00861 58 AE-LIIASGGDGTLSAVAGALI-----GTDIPLGII 87 (300)
T ss_pred CC-EEEEECChHHHHHHHHHHh-----cCCCcEEEE
Confidence 35 5667899999999987764 134677777
No 265
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=33.42 E-value=1e+02 Score=25.25 Aligned_cols=62 Identities=15% Similarity=0.247 Sum_probs=33.1
Q ss_pred EEEecCCcCcH-HHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHH-HHHHHcCCCCcccccc-eEEcCCHHHHHHHhh
Q 028256 118 FIALPGGYGTL-EELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFI-DKAVDEGFIAPAARYI-IVSAQTAHELICKLE 194 (211)
Q Consensus 118 ~IvlpGG~GTL-~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l-~~~~~~g~i~~~~~~~-i~~~~d~ee~~~~l~ 194 (211)
.|++-||.||- ..+. ..+|-.++-..|- +++.+. +.+...|.= +. +.+....+++.+++.
T Consensus 3 aiIla~G~g~Rl~plt----------~~~pK~llpi~g~--piI~~~l~~l~~~Gi~-----~I~iv~~~~~~~i~~~l~ 65 (217)
T cd04197 3 AVVLADSFNRRFRPLT----------KEKPRCLLPLANV--PLIDYTLEFLALNGVE-----EVFVFCCSHSDQIKEYIE 65 (217)
T ss_pred EEEEcCCCcccccccc----------cCCCceeeEECCE--ehHHHHHHHHHHCCCC-----eEEEEeCCCHHHHHHHHh
Confidence 47788888883 2221 2334334444443 566654 677765541 22 223334666777776
Q ss_pred hh
Q 028256 195 VF 196 (211)
Q Consensus 195 ~~ 196 (211)
+.
T Consensus 66 ~~ 67 (217)
T cd04197 66 KS 67 (217)
T ss_pred hc
Confidence 54
No 266
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=33.07 E-value=3.1e+02 Score=24.48 Aligned_cols=49 Identities=18% Similarity=0.361 Sum_probs=30.2
Q ss_pred HHHHHHHHhcCEEEEecCC---cCcHHHHHHHHHHHHhCCCCCcEEEEeCCccch
Q 028256 106 QRKAEMARQADAFIALPGG---YGTLEELLEVITWAQLGIHDKPVGLLNVDGYYN 157 (211)
Q Consensus 106 ~Rk~~m~~~sDa~IvlpGG---~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~ 157 (211)
++-..++..=+|+|+=||= -+++.++..++.... ..++|+++ +.+|.|-
T Consensus 93 ~~i~k~L~RlhavVIGPGLGRdp~~~k~i~~iley~~--~~dvP~VI-DaDGL~L 144 (306)
T KOG3974|consen 93 DIIEKLLQRLHAVVIGPGLGRDPAILKEIAKILEYLR--GKDVPLVI-DADGLWL 144 (306)
T ss_pred hHHHHHHhheeEEEECCCCCCCHHHHHHHHHHHHHHh--cCCCcEEE-cCCceEe
Confidence 3444477778888887752 245666666554322 24678876 7788883
No 267
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=32.65 E-value=2.8e+02 Score=22.75 Aligned_cols=66 Identities=20% Similarity=0.194 Sum_probs=37.0
Q ss_pred CeEEecCCCCChhHHH-HHHHHhcCCeEEEEecCcCCCCCCCCCCCceeeec---CCHHHHHHHHHHhcCEEEEe
Q 028256 51 IDLVYGGGSIGLMGLV-SQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAV---SGMHQRKAEMARQADAFIAL 121 (211)
Q Consensus 51 ~~lv~GGg~~GlM~a~-a~gA~~~gG~viGv~P~~~~~~e~~~~~~~~~~~~---~~~~~Rk~~m~~~sDa~Ivl 121 (211)
.+.++=-+. |-|+.+ ++.|...|..|+=|.-... ...++..+.+.+ .+|.+.-...+..+|++|..
T Consensus 20 VR~ItN~SS-G~~G~~lA~~~~~~Ga~V~li~g~~~----~~~p~~~~~i~v~sa~em~~~~~~~~~~~Di~I~a 89 (185)
T PF04127_consen 20 VRFITNRSS-GKMGAALAEEAARRGAEVTLIHGPSS----LPPPPGVKVIRVESAEEMLEAVKELLPSADIIIMA 89 (185)
T ss_dssp SEEEEES---SHHHHHHHHHHHHTT-EEEEEE-TTS--------TTEEEEE-SSHHHHHHHHHHHGGGGSEEEE-
T ss_pred ceEecCCCc-CHHHHHHHHHHHHCCCEEEEEecCcc----ccccccceEEEecchhhhhhhhccccCcceeEEEe
Confidence 345555544 999865 7888889999988854321 112223344444 45666666667778887754
No 268
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=32.23 E-value=2.3e+02 Score=27.43 Aligned_cols=64 Identities=14% Similarity=0.127 Sum_probs=41.7
Q ss_pred hhhcCcceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeE------------------------------EecCCCCCh
Q 028256 13 ALKSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDL------------------------------VYGGGSIGL 62 (211)
Q Consensus 13 ~~~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~l------------------------------v~GGg~~Gl 62 (211)
....++++|+|+. +.. .+...+.+.++.++|.++|+.+ |+=||. |.
T Consensus 285 ~w~~~~~~i~iv~--~~~-~~~~~~~~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGD-GT 360 (569)
T PRK14076 285 KWRIKPTKFGIVS--RID-NEEAINLALKIIKYLDSKGIPYELESFLYNKLKNRLNEECNLIDDIEEISHIISIGGD-GT 360 (569)
T ss_pred hcccCCcEEEEEc--CCC-CHHHHHHHHHHHHHHHHCCCEEEEechhhhhhcccccccccccccccCCCEEEEECCc-HH
Confidence 3466778899993 332 4566678888888886665422 222445 77
Q ss_pred hHHHHHHHHhcCCeEEEE
Q 028256 63 MGLVSQAVYDGGRHVLGV 80 (211)
Q Consensus 63 M~a~a~gA~~~gG~viGv 80 (211)
|=-+++-....+-.++||
T Consensus 361 ~L~aa~~~~~~~~PilGi 378 (569)
T PRK14076 361 VLRASKLVNGEEIPIICI 378 (569)
T ss_pred HHHHHHHhcCCCCCEEEE
Confidence 766666666667788887
No 269
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=32.18 E-value=63 Score=26.16 Aligned_cols=41 Identities=32% Similarity=0.403 Sum_probs=22.5
Q ss_pred HhcCEEEEecCC-----cCcHHHHHHHHHHHHhC-CCCCcEEEEeCC
Q 028256 113 RQADAFIALPGG-----YGTLEELLEVITWAQLG-IHDKPVGLLNVD 153 (211)
Q Consensus 113 ~~sDa~IvlpGG-----~GTL~El~~~~~~~~lg-~~~kPiill~~~ 153 (211)
..+|.+|+.+|| ..+.......+.+...- ..++|+++++.+
T Consensus 62 ~~~~~vii~GGg~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~g~g 108 (286)
T PF04230_consen 62 KNADDVIIGGGGGSDNNFIDLWSLPIFLRWLFLAKKLGKPVIILGQG 108 (286)
T ss_pred ccCCeEEEECCcccccCCCcchhhHHHHHHHHHHHhcCCCeEEECce
Confidence 567777777775 22222221112222222 368999999774
No 270
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=32.10 E-value=52 Score=29.62 Aligned_cols=54 Identities=19% Similarity=0.065 Sum_probs=37.3
Q ss_pred ccchhHHHHHHHHHHcCCCCcccccc---eEEcCCHHHHHHHhhhhccCc-eeEEeee
Q 028256 154 GYYNSLLSFIDKAVDEGFIAPAARYI---IVSAQTAHELICKLEVFFFFF-FWLFSFS 207 (211)
Q Consensus 154 g~~~~l~~~l~~~~~~g~i~~~~~~~---i~~~~d~ee~~~~l~~~~~~~-~~~~~~~ 207 (211)
.+|+-+-.-+..|+.+|.|+++..+. ..+..+++|+.+.|++--... ..+..|.
T Consensus 198 ~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I~~le~~~ 255 (334)
T PF03492_consen 198 MLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEIEKLELFE 255 (334)
T ss_dssp CHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEEEEEEEEE
T ss_pred hHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEEEEEEEEe
Confidence 47888888889999999999997764 578999999999988643322 4444444
No 271
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=32.04 E-value=3.7e+02 Score=23.95 Aligned_cols=87 Identities=22% Similarity=0.243 Sum_probs=53.5
Q ss_pred HHHHhcCEEEEe--------cCCcCcHHHHHHHHHHHHhCCCCCcEEEEeC---CccchhHHHHHHHHHHcCCCCcccc-
Q 028256 110 EMARQADAFIAL--------PGGYGTLEELLEVITWAQLGIHDKPVGLLNV---DGYYNSLLSFIDKAVDEGFIAPAAR- 177 (211)
Q Consensus 110 ~m~~~sDa~Ivl--------pGG~GTL~El~~~~~~~~lg~~~kPiill~~---~g~~~~l~~~l~~~~~~g~i~~~~~- 177 (211)
.+++.+..+|++ |+.+||.+++-+... ..+....+.+-|.. .+--+.+.+|++++....-..+...
T Consensus 113 ~i~~~~kv~v~f~D~~Q~i~~~e~~~~~~l~~~~~--~~~~~~~~~~~L~~q~R~~~~~~~~~wI~~ll~~~~~~~~~~~ 190 (352)
T PF09848_consen 113 EIIKRAKVVVFFYDENQSIRPSEIGTLENLEEIAE--NLGIEVRHFFELKTQFRCHGSKEYIDWIDNLLDNKNISPKPFN 190 (352)
T ss_pred HHHhcCCEEEEEEccccEeecccCCCHHHHHHHHH--hcCCccccCcCcCcceecCCCHHHHHHHHHHHhccccCccccc
Confidence 456667777765 677898887655443 22211112111211 0113678899999887666554432
Q ss_pred ---c-ceEEcCCHHHHHHHhhhhcc
Q 028256 178 ---Y-IIVSAQTAHELICKLEVFFF 198 (211)
Q Consensus 178 ---~-~i~~~~d~ee~~~~l~~~~~ 198 (211)
+ .+.+++|++++.+.|++...
T Consensus 191 ~~~~yd~~~f~~~~~~~~~i~~k~~ 215 (352)
T PF09848_consen 191 PDENYDFRVFDSPEEMKEAIKEKNK 215 (352)
T ss_pred cCCceeEEEECCHHHHHHHHHHHhc
Confidence 2 38999999999999987644
No 272
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=32.02 E-value=2.2e+02 Score=25.04 Aligned_cols=60 Identities=25% Similarity=0.330 Sum_probs=34.4
Q ss_pred cHHHHHHHHHHHHhCCCCCcEEEEeCCccchhH-----HHHHHHHHHcCCCCcccccceEEcCCHHHHHHHhhh
Q 028256 127 TLEELLEVITWAQLGIHDKPVGLLNVDGYYNSL-----LSFIDKAVDEGFIAPAARYIIVSAQTAHELICKLEV 195 (211)
Q Consensus 127 TL~El~~~~~~~~lg~~~kPiill~~~g~~~~l-----~~~l~~~~~~g~i~~~~~~~i~~~~d~ee~~~~l~~ 195 (211)
|++..++.+....-.-...|++|+. ||+++ ..|++.+.+.|. +-+.+.|=|-|.-+.+..
T Consensus 77 t~~~~lel~~~~r~~~~~~Pivlm~---Y~Npi~~~Gie~F~~~~~~~Gv------dGlivpDLP~ee~~~~~~ 141 (265)
T COG0159 77 TLEDTLELVEEIRAKGVKVPIVLMT---YYNPIFNYGIEKFLRRAKEAGV------DGLLVPDLPPEESDELLK 141 (265)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEE---eccHHHHhhHHHHHHHHHHcCC------CEEEeCCCChHHHHHHHH
Confidence 5566666654333222457999995 77764 445666666554 235556655555554443
No 273
>PRK05569 flavodoxin; Provisional
Probab=31.88 E-value=67 Score=24.36 Aligned_cols=29 Identities=21% Similarity=0.360 Sum_probs=16.9
Q ss_pred CCCcEEEEeCCccc-hhHHHHHHHH-HHcCC
Q 028256 143 HDKPVGLLNVDGYY-NSLLSFIDKA-VDEGF 171 (211)
Q Consensus 143 ~~kPiill~~~g~~-~~l~~~l~~~-~~~g~ 171 (211)
.+||++++.+.|+. ......++.+ ...|+
T Consensus 82 ~~K~v~~f~t~g~~~~~~~~~~~~~l~~~g~ 112 (141)
T PRK05569 82 ENKKCILFGSYGWDNGEFMKLWKDRMKDYGF 112 (141)
T ss_pred CCCEEEEEeCCCCCCCcHHHHHHHHHHHCCC
Confidence 57999999887654 2444444333 33344
No 274
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=31.69 E-value=1.2e+02 Score=24.43 Aligned_cols=36 Identities=11% Similarity=0.255 Sum_probs=25.8
Q ss_pred cCcceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEE
Q 028256 16 SRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV 54 (211)
Q Consensus 16 ~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv 54 (211)
..++.|+|. |...+.... ..|..|+..+|++|..++
T Consensus 15 ~~~kvI~v~-s~kgG~GKT--t~a~~LA~~la~~G~rVl 50 (204)
T TIGR01007 15 AEIKVLLIT-SVKPGEGKS--TTSANIAVAFAQAGYKTL 50 (204)
T ss_pred CCCcEEEEe-cCCCCCCHH--HHHHHHHHHHHhCCCeEE
Confidence 336778887 455554443 468899999999998765
No 275
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.57 E-value=1.2e+02 Score=26.85 Aligned_cols=52 Identities=27% Similarity=0.296 Sum_probs=32.9
Q ss_pred hcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCC--ccc-----hhHHHHHHHHHHcCC
Q 028256 114 QADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD--GYY-----NSLLSFIDKAVDEGF 171 (211)
Q Consensus 114 ~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~~--g~~-----~~l~~~l~~~~~~g~ 171 (211)
.+|.+| .-||=||+--.+..+. ..++||+=+|.+ ||. +++.+.++.+.+..|
T Consensus 64 ~~Dlvi-~iGGDGT~L~aa~~~~-----~~~~PilGIN~G~lGFLt~~~~~~~~~~l~~i~~g~y 122 (287)
T PRK14077 64 ISDFLI-SLGGDGTLISLCRKAA-----EYDKFVLGIHAGHLGFLTDITVDEAEKFFQAFFQGEF 122 (287)
T ss_pred CCCEEE-EECCCHHHHHHHHHhc-----CCCCcEEEEeCCCcccCCcCCHHHHHHHHHHHHcCCC
Confidence 467544 4578899765554332 357898878775 566 456666766655443
No 276
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=31.51 E-value=3.7e+02 Score=23.77 Aligned_cols=111 Identities=16% Similarity=0.147 Sum_probs=58.8
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeE-----EecCCCCCh-----------hHHHHHHHHhcCCeEEEEec
Q 028256 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDL-----VYGGGSIGL-----------MGLVSQAVYDGGRHVLGVIP 82 (211)
Q Consensus 19 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~l-----v~GGg~~Gl-----------M~a~a~gA~~~gG~viGv~P 82 (211)
..|=+= ||+. +-++-.+.++++.+..-..|..| ..||...|+ .+.+.+=+.+.|-..+.|.-
T Consensus 99 tSVM~D-gS~l-p~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvai 176 (284)
T PRK12857 99 TSVMID-GSKL-PLEENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDITVDEREAAMTDPEEARRFVEETGVDALAIAI 176 (284)
T ss_pred CeEEEe-CCCC-CHHHHHHHHHHHHHHHHHcCCEEEEEeeecCCccCCCCcccchhhcCCHHHHHHHHHHHCCCEEeecc
Confidence 344444 3333 34556677888888777777766 234433342 12233333344544444411
Q ss_pred CcCCCCCCCCCCCceeeecCCH-HHHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHhCC
Q 028256 83 KTLMPREITGDTVGEVKAVSGM-HQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGI 142 (211)
Q Consensus 83 ~~~~~~e~~~~~~~~~~~~~~~-~~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~ 142 (211)
... |-.|.. ...+ ++|.+.+-+..|.-+||-||+|+-+|-+... .+.|.
T Consensus 177 Gt~------HG~y~~---~p~Ld~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~a--i~~Gi 226 (284)
T PRK12857 177 GTA------HGPYKG---EPKLDFDRLAKIKELVNIPIVLHGSSGVPDEAIRKA--ISLGV 226 (284)
T ss_pred Ccc------ccccCC---CCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHH--HHcCC
Confidence 110 100100 0111 5676667777788899999999999887644 34443
No 277
>PRK06443 chorismate mutase; Validated
Probab=31.39 E-value=82 Score=26.11 Aligned_cols=41 Identities=20% Similarity=0.275 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHcCCeEEecCCCCChhHHHHHHHHhcCCeEEE
Q 028256 35 YQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLG 79 (211)
Q Consensus 35 ~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~a~gA~~~gG~viG 79 (211)
|...|+.||..+.+.||.|+-- -.....-.|+..+||.++-
T Consensus 92 y~~~~~sl~~~~~~~g~~v~i~----~~~~~~~~~~~~~~~~~~~ 132 (177)
T PRK06443 92 YDSLILSLGLILSRPGIEIYIE----DNPDSIEEGCSKAGGHVVI 132 (177)
T ss_pred hHHHHHHHHHHHhcCCcEEEec----cCchHHHHhhhhcCCeEec
Confidence 7789999999999999998732 3678888899999998753
No 278
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=31.08 E-value=1.4e+02 Score=25.91 Aligned_cols=31 Identities=32% Similarity=0.479 Sum_probs=22.0
Q ss_pred EEEecCCcCcHHHHHHHHHHHHhCC-CCCcEEEE
Q 028256 118 FIALPGGYGTLEELLEVITWAQLGI-HDKPVGLL 150 (211)
Q Consensus 118 ~IvlpGG~GTL~El~~~~~~~~lg~-~~kPiill 150 (211)
+|+.-||=||++|+...+. ..+. ...|+.++
T Consensus 55 ~vv~~GGDGTi~ev~ngl~--~~~~~~~~~lgii 86 (293)
T TIGR03702 55 TVIAGGGDGTLREVATALA--QIRDDAAPALGLL 86 (293)
T ss_pred EEEEEcCChHHHHHHHHHH--hhCCCCCCcEEEE
Confidence 6778899999999997763 2121 23578877
No 279
>TIGR00642 mmCoA_mut_beta methylmalonyl-CoA mutase, heterodimeric type, beta chain. The adenosylcobalamin-binding, catalytic chain of methylmalonyl-CoA mutase may form homodimers, as in mitochondrion and E. coli, or heterodimers with a shorter, homologous chain that does not bind adenosylcobalamin. This model describes this non-catalytic beta chain, as found in the enzyme from Propionibacterium freudenreichii, for which the 3-dimensional structure has been solved.
Probab=30.98 E-value=1.3e+02 Score=29.63 Aligned_cols=46 Identities=22% Similarity=0.357 Sum_probs=32.0
Q ss_pred cCcceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEecCCCCChhHH
Q 028256 16 SRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGL 65 (211)
Q Consensus 16 ~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a 65 (211)
..-..|+|+|||. +.|.+.|.++.+.|-+.|...|+=.|..+-|+.
T Consensus 544 ~sga~i~viCssD----~~Y~~~a~~~~~al~~ag~~~v~lAG~p~~~~~ 589 (619)
T TIGR00642 544 KAGAQVAVLCSSD----KVYAQQGLEVAKALKAAGAKALYLAGAFKEFGD 589 (619)
T ss_pred hcCCCEEEEeCCC----cchHHHHHHHHHHHHhCCCCEEEEeCCCcchhh
Confidence 3445799999754 568899999999997776655444445455554
No 280
>PRK07454 short chain dehydrogenase; Provisional
Probab=30.83 E-value=2.6e+02 Score=22.65 Aligned_cols=34 Identities=15% Similarity=0.089 Sum_probs=23.8
Q ss_pred cCcceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEecC
Q 028256 16 SRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGG 57 (211)
Q Consensus 16 ~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GG 57 (211)
+.++++.|.|+++. ....+.+.|+++|+.|+.-+
T Consensus 4 ~~~k~vlItG~sg~--------iG~~la~~l~~~G~~V~~~~ 37 (241)
T PRK07454 4 NSMPRALITGASSG--------IGKATALAFAKAGWDLALVA 37 (241)
T ss_pred CCCCEEEEeCCCch--------HHHHHHHHHHHCCCEEEEEe
Confidence 34678888876542 35678888888998876544
No 281
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=30.82 E-value=1.2e+02 Score=24.72 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=27.6
Q ss_pred HHHHhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCC
Q 028256 110 EMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD 153 (211)
Q Consensus 110 ~m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~~ 153 (211)
.+-+..|++|+.|-....+.++.+.+.- .+.||++++..
T Consensus 51 ~i~~~~d~Iiv~~~~~~~~~~~l~~~~~-----~gIpvv~~d~~ 89 (257)
T PF13407_consen 51 AISQGVDGIIVSPVDPDSLAPFLEKAKA-----AGIPVVTVDSD 89 (257)
T ss_dssp HHHTTESEEEEESSSTTTTHHHHHHHHH-----TTSEEEEESST
T ss_pred HHHhcCCEEEecCCCHHHHHHHHHHHhh-----cCceEEEEecc
Confidence 3455589999998887766666665542 46799988765
No 282
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=30.81 E-value=4.1e+02 Score=24.08 Aligned_cols=70 Identities=16% Similarity=0.133 Sum_probs=40.1
Q ss_pred cCEEE-EecCCcCcHHHHHHHHHHHHhCC-CCCcEEEEeCCc-cchhHHHHHHHHHHcCCCCcccccceEEcCCHHHHHH
Q 028256 115 ADAFI-ALPGGYGTLEELLEVITWAQLGI-HDKPVGLLNVDG-YYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELIC 191 (211)
Q Consensus 115 sDa~I-vlpGG~GTL~El~~~~~~~~lg~-~~kPiill~~~g-~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee~~~ 191 (211)
.|+++ .++||+.-.+++.+.+.-..-.. .+|||++- ..| -.+.... .+.+.|+ .+.++++++++++
T Consensus 311 vd~ilv~i~gg~~~~~~va~~i~~a~~~~~~~kPvvv~-~~g~~~~~~~~---~L~~~G~-------~ip~~~~~~~Av~ 379 (386)
T TIGR01016 311 VKVVFINIFGGITRCDLVAKGLVEALKEVGVNVPVVVR-LEGTNVEEGKK---ILAESGL-------NIIFATSMEEAAE 379 (386)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHhcCCCCcEEEE-eCCccHHHHHH---HHHHcCC-------CccccCCHHHHHH
Confidence 46655 45788877788877665332222 24899543 334 2222322 2333342 2567999999998
Q ss_pred Hhhh
Q 028256 192 KLEV 195 (211)
Q Consensus 192 ~l~~ 195 (211)
..-+
T Consensus 380 ~~~~ 383 (386)
T TIGR01016 380 KAVE 383 (386)
T ss_pred HHHH
Confidence 7754
No 283
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=30.67 E-value=1.6e+02 Score=25.27 Aligned_cols=68 Identities=19% Similarity=0.275 Sum_probs=38.3
Q ss_pred HHHHHhcCEEEEec--CCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCCCcccccceEEcCCH
Q 028256 109 AEMARQADAFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTA 186 (211)
Q Consensus 109 ~~m~~~sDa~Ivlp--GG~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ 186 (211)
.-+...||++|.-. .|+|. =+.|+++ .++|++..+..+. .+++. +| ....+.-.+|+
T Consensus 265 ~~~~~~~d~~v~ps~~E~~~~--~~~EAma------~g~PvI~s~~~~~-~e~i~-------~~-----~~G~~~~~~~~ 323 (371)
T cd04962 265 EELLSIADLFLLPSEKESFGL--AALEAMA------CGVPVVASNAGGI-PEVVK-------HG-----ETGFLVDVGDV 323 (371)
T ss_pred HHHHHhcCEEEeCCCcCCCcc--HHHHHHH------cCCCEEEeCCCCc-hhhhc-------CC-----CceEEcCCCCH
Confidence 34567899877542 34453 2666676 7899999877543 22211 11 11122223477
Q ss_pred HHHHHHhhhhc
Q 028256 187 HELICKLEVFF 197 (211)
Q Consensus 187 ee~~~~l~~~~ 197 (211)
+++.+.+.+..
T Consensus 324 ~~l~~~i~~l~ 334 (371)
T cd04962 324 EAMAEYALSLL 334 (371)
T ss_pred HHHHHHHHHHH
Confidence 77777766543
No 284
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=30.65 E-value=1.7e+02 Score=24.06 Aligned_cols=35 Identities=26% Similarity=0.400 Sum_probs=23.8
Q ss_pred HHHhcCEEEEec--CCcCcHHHHHHHHHHHHhCCCCCcEEEEeCC
Q 028256 111 MARQADAFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVD 153 (211)
Q Consensus 111 m~~~sDa~Ivlp--GG~GTL~El~~~~~~~~lg~~~kPiill~~~ 153 (211)
+...||++|.-. .|.|+ =+.|+++ .++||+..+..
T Consensus 260 ~~~~~d~~i~ps~~e~~~~--~~~Ea~~------~G~PvI~~~~~ 296 (353)
T cd03811 260 YLKAADLFVLSSRYEGFPN--VLLEAMA------LGTPVVATDCP 296 (353)
T ss_pred HHHhCCEEEeCcccCCCCc--HHHHHHH------hCCCEEEcCCC
Confidence 577899877542 33444 3666676 79999987765
No 285
>PLN02929 NADH kinase
Probab=30.54 E-value=1.2e+02 Score=27.28 Aligned_cols=34 Identities=35% Similarity=0.389 Sum_probs=22.2
Q ss_pred HhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCC
Q 028256 113 RQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD 153 (211)
Q Consensus 113 ~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~~ 153 (211)
..+|.+| .-||=||+--.+.. + ...+||+=+|.+
T Consensus 63 ~~~Dlvi-~lGGDGT~L~aa~~-----~-~~~iPvlGIN~G 96 (301)
T PLN02929 63 RDVDLVV-AVGGDGTLLQASHF-----L-DDSIPVLGVNSD 96 (301)
T ss_pred CCCCEEE-EECCcHHHHHHHHH-----c-CCCCcEEEEECC
Confidence 3457554 45788998755433 2 357899888874
No 286
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.40 E-value=2.5e+02 Score=24.49 Aligned_cols=58 Identities=14% Similarity=0.068 Sum_probs=35.5
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCe-----------EEecCCCCChhHHHHHHHHhc-CCeEEEEe
Q 028256 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNID-----------LVYGGGSIGLMGLVSQAVYDG-GRHVLGVI 81 (211)
Q Consensus 18 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~-----------lv~GGg~~GlM~a~a~gA~~~-gG~viGv~ 81 (211)
|.+|+++. +.. . ...+.+.++.++|.++|+. ++.|| . |.|=-+++-+... .-.++||-
T Consensus 2 ~~~i~iv~--~~~-~-~a~~~~~~l~~~l~~~g~~~~~~~~~~D~vi~lGG-D-GT~L~a~~~~~~~~~~pilgIn 71 (264)
T PRK03501 2 RRNLFFFY--KRD-K-ELVEKVKPLKKIAEEYGFTVVDHPKNANIIVSIGG-D-GTFLQAVRKTGFREDCLYAGIS 71 (264)
T ss_pred CcEEEEEE--CCC-H-HHHHHHHHHHHHHHHCCCEEEcCCCCccEEEEECC-c-HHHHHHHHHhcccCCCeEEeEe
Confidence 34788884 222 2 4557788888888887754 34454 5 8876555554433 44567773
No 287
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=30.25 E-value=1.8e+02 Score=25.84 Aligned_cols=82 Identities=15% Similarity=0.041 Sum_probs=36.9
Q ss_pred CeEEecCCCCChhHHHHHHHHhcCCeEEEEecCcCCCCCCC-CCCCceeeecCCHHHHHHHHHHhcCEEEEecCCcCcHH
Q 028256 51 IDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREIT-GDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLE 129 (211)
Q Consensus 51 ~~lv~GGg~~GlM~a~a~gA~~~gG~viGv~P~~~~~~e~~-~~~~~~~~~~~~~~~Rk~~m~~~sDa~IvlpGG~GTL~ 129 (211)
..+|.|+|..|++ +..-|+..|..++.+........+.. .-..+.++...+- ++-..+....|.+|=.-|+..|++
T Consensus 186 ~VlV~G~G~vG~~--avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~-~~~~~~~~~~D~vid~~g~~~~~~ 262 (360)
T PLN02586 186 HLGVAGLGGLGHV--AVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDP-EKMKAAIGTMDYIIDTVSAVHALG 262 (360)
T ss_pred EEEEECCCHHHHH--HHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCH-HHHHhhcCCCCEEEECCCCHHHHH
Confidence 3456565544443 55667778888877643321100110 1111222222221 111111123577776666655666
Q ss_pred HHHHHH
Q 028256 130 ELLEVI 135 (211)
Q Consensus 130 El~~~~ 135 (211)
+.+..+
T Consensus 263 ~~~~~l 268 (360)
T PLN02586 263 PLLGLL 268 (360)
T ss_pred HHHHHh
Confidence 655443
No 288
>PLN02591 tryptophan synthase
Probab=30.12 E-value=2.6e+02 Score=24.24 Aligned_cols=41 Identities=24% Similarity=0.516 Sum_probs=26.6
Q ss_pred cHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHH-----HHHHHHHcCC
Q 028256 127 TLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLS-----FIDKAVDEGF 171 (211)
Q Consensus 127 TL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~-----~l~~~~~~g~ 171 (211)
|++.+++.+.-.. ...+.|++++. ||+++.. |++.+.+.|.
T Consensus 62 ~~~~~~~~~~~~r-~~~~~p~ilm~---Y~N~i~~~G~~~F~~~~~~aGv 107 (250)
T PLN02591 62 TLDSVISMLKEVA-PQLSCPIVLFT---YYNPILKRGIDKFMATIKEAGV 107 (250)
T ss_pred CHHHHHHHHHHHh-cCCCCCEEEEe---cccHHHHhHHHHHHHHHHHcCC
Confidence 6677777665433 23567988774 8887655 6677776654
No 289
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=30.09 E-value=57 Score=27.55 Aligned_cols=39 Identities=13% Similarity=0.023 Sum_probs=21.6
Q ss_pred cceEEEEeCCCCCC-CHHHHHHHHHHHHHHHHcCCeEEecC
Q 028256 18 FKRVCVFCGSSPGK-SPSYQLAAIQLGKQLVERNIDLVYGG 57 (211)
Q Consensus 18 ~~~I~Vfggs~~~~-~~~~~~~A~~lG~~la~~g~~lv~GG 57 (211)
|++|+|+.+|...- .-+. ..+..--..|.+.|+.+..=+
T Consensus 1 ~kkVlills~~~~~dG~e~-~E~~~P~~~L~~aG~~V~~aS 40 (217)
T PRK11780 1 MKKIAVILSGCGVYDGSEI-HEAVLTLLALDRAGAEAVCFA 40 (217)
T ss_pred CCEEEEEEccCCCCCCEeh-hHHHHHHHHHHHCCCEEEEEe
Confidence 35788886532211 1122 223345677788999886644
No 290
>PRK00625 shikimate kinase; Provisional
Probab=30.04 E-value=2e+02 Score=23.18 Aligned_cols=77 Identities=19% Similarity=0.083 Sum_probs=39.6
Q ss_pred HHHHHHHHcCCeEEecCCCCChhHHHHHHHHhcCCeEEEEecC--cC----CCCCCCCCCCce-eeecCCHHHHHHHHHH
Q 028256 41 QLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPK--TL----MPREITGDTVGE-VKAVSGMHQRKAEMAR 113 (211)
Q Consensus 41 ~lG~~la~~g~~lv~GGg~~GlM~a~a~gA~~~gG~viGv~P~--~~----~~~e~~~~~~~~-~~~~~~~~~Rk~~m~~ 113 (211)
++-+.+...+..|.+|||. ++..-+...+..+|.++-+-.. .. ..+.... .... -.+.+-+..|....-+
T Consensus 65 ~~l~~l~~~~~VIs~GGg~--~~~~e~~~~l~~~~~Vv~L~~~~e~l~~Rl~~R~~~~-~~~~~~~~~~ll~~R~~~Y~~ 141 (173)
T PRK00625 65 LALTSLPVIPSIVALGGGT--LMIEPSYAHIRNRGLLVLLSLPIATIYQRLQKRGLPE-RLKHAPSLEEILSQRIDRMRS 141 (173)
T ss_pred HHHHHhccCCeEEECCCCc--cCCHHHHHHHhcCCEEEEEECCHHHHHHHHhcCCCCc-ccCcHHHHHHHHHHHHHHHHH
Confidence 3345555566667788764 4555555567777887766321 11 1111111 0100 0112224678777766
Q ss_pred hcCEEEE
Q 028256 114 QADAFIA 120 (211)
Q Consensus 114 ~sDa~Iv 120 (211)
.||..|-
T Consensus 142 ~ad~~i~ 148 (173)
T PRK00625 142 IADYIFS 148 (173)
T ss_pred HCCEEEe
Confidence 6888764
No 291
>COG1534 Predicted RNA-binding protein containing KH domain, possibly ribosomal protein [Translation, ribosomal structure and biogenesis]
Probab=30.04 E-value=1.4e+02 Score=22.36 Aligned_cols=54 Identities=17% Similarity=0.137 Sum_probs=37.2
Q ss_pred CCCcEEEEeCCccchhHHHHHHH-HHHcCCCCcccccceEEcCCHHHHHHHhhhhcc
Q 028256 143 HDKPVGLLNVDGYYNSLLSFIDK-AVDEGFIAPAARYIIVSAQTAHELICKLEVFFF 198 (211)
Q Consensus 143 ~~kPiill~~~g~~~~l~~~l~~-~~~~g~i~~~~~~~i~~~~d~ee~~~~l~~~~~ 198 (211)
+-+|++.++.+|.-+.++..++. +.+.+.|.-.-.. -..+|..|+.+.|++-..
T Consensus 16 ~l~piv~IGk~Glte~vi~Ei~~aL~~reLIKVkvl~--~~~edr~eia~~l~~~~~ 70 (97)
T COG1534 16 HLKPIVQIGKNGLTEGVIKEIDRALEARELIKVKVLQ--NAREDKKEIAEALAEETG 70 (97)
T ss_pred cCCceEEecCCccCHHHHHHHHHHHHhCCcEEEEeec--cchhhHHHHHHHHHHHhC
Confidence 56899999999999999999965 5556666522111 123467778888876543
No 292
>PRK06801 hypothetical protein; Provisional
Probab=29.82 E-value=3.9e+02 Score=23.59 Aligned_cols=102 Identities=19% Similarity=0.128 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHHHHHHHHcCCeE-----EecCCCCC------------hhHHHHHHHHhcCCeEEEEecCcCCCCCCCCC
Q 028256 31 KSPSYQLAAIQLGKQLVERNIDL-----VYGGGSIG------------LMGLVSQAVYDGGRHVLGVIPKTLMPREITGD 93 (211)
Q Consensus 31 ~~~~~~~~A~~lG~~la~~g~~l-----v~GGg~~G------------lM~a~a~gA~~~gG~viGv~P~~~~~~e~~~~ 93 (211)
+.++..+.++++.+...+.|..| .-||...+ -.+.+.+-+.+.|-..++| + ....+.
T Consensus 109 ~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~~~tgvD~LAv-a-iGt~Hg---- 182 (286)
T PRK06801 109 EYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFVDRTGIDALAV-A-IGNAHG---- 182 (286)
T ss_pred CHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccCCcccccCCCHHHHHHHHHHHCcCEEEe-c-cCCCCC----
Confidence 34566778888888887777766 12332212 1245555555677777777 2 211111
Q ss_pred CCceeeecCCHHHHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHhCC
Q 028256 94 TVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGI 142 (211)
Q Consensus 94 ~~~~~~~~~~~~~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~ 142 (211)
.+.. ...-=++|.+.+.+..+.-+|+-||+|+-+|-+... ...|.
T Consensus 183 ~y~~--~~~l~~e~l~~i~~~~~~PLVlHGGSgi~~e~~~~~--i~~Gi 227 (286)
T PRK06801 183 KYKG--EPKLDFARLAAIHQQTGLPLVLHGGSGISDADFRRA--IELGI 227 (286)
T ss_pred CCCC--CCCCCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHH--HHcCC
Confidence 1100 011114566667777788899999999988766433 45554
No 293
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=29.80 E-value=1.4e+02 Score=24.80 Aligned_cols=16 Identities=44% Similarity=0.669 Sum_probs=7.3
Q ss_pred HHHHHHHhcCCeEEEE
Q 028256 65 LVSQAVYDGGRHVLGV 80 (211)
Q Consensus 65 a~a~gA~~~gG~viGv 80 (211)
++.+.+.+.|..++||
T Consensus 68 ~~~~~~~~~~~PvlGi 83 (209)
T PRK13146 68 AVIEAVLAAGRPFLGI 83 (209)
T ss_pred HHHHHHHhCCCcEEEE
Confidence 3333334445555554
No 294
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=29.79 E-value=70 Score=27.02 Aligned_cols=45 Identities=11% Similarity=0.068 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCC
Q 028256 105 HQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD 153 (211)
Q Consensus 105 ~~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~~ 153 (211)
.++....++.+|.+|+ +||--.+.-++.+.+...++.|++++|.+
T Consensus 162 ~~~~~~~~~~~Dlllv----iGTSl~v~p~~~l~~~~~~~~~~i~iN~~ 206 (225)
T cd01411 162 IEEAIQAIEKADLLVI----VGTSFVVYPFAGLIDYRQAGANLIAINKE 206 (225)
T ss_pred HHHHHHHHhcCCEEEE----ECcCCeehhHHHHHHHHhCCCeEEEECCC
Confidence 3566667788997777 33544454445544433357899999986
No 295
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=29.77 E-value=89 Score=28.46 Aligned_cols=41 Identities=12% Similarity=0.204 Sum_probs=25.7
Q ss_pred HHHHHHhhhhcCcceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEE
Q 028256 6 QQQQAAAALKSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV 54 (211)
Q Consensus 6 ~~~~~~~~~~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv 54 (211)
|++++--+....+++|+|+||... ....+++.|.++|+.|.
T Consensus 86 q~~~~~~~~~~~~~~I~IiGG~Gl--------mG~slA~~l~~~G~~V~ 126 (374)
T PRK11199 86 ENDKGFKTLNPDLRPVVIVGGKGQ--------LGRLFAKMLTLSGYQVR 126 (374)
T ss_pred hHHhcccccCcccceEEEEcCCCh--------hhHHHHHHHHHCCCeEE
Confidence 344444444446678999975432 23567888888888754
No 296
>PRK05867 short chain dehydrogenase; Provisional
Probab=29.72 E-value=2.7e+02 Score=22.87 Aligned_cols=54 Identities=15% Similarity=0.189 Sum_probs=0.0
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEecCCCCChhHHHHHHHHhcCCeEEEE
Q 028256 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (211)
Q Consensus 19 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~a~gA~~~gG~viGv 80 (211)
+++-|.|+++ -...++++.|+++|+.|+..+-...-.+...+...+.++++..+
T Consensus 10 k~vlVtGas~--------gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~ 63 (253)
T PRK05867 10 KRALITGAST--------GIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPV 63 (253)
T ss_pred CEEEEECCCc--------hHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEE
No 297
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=29.70 E-value=2.7e+02 Score=24.54 Aligned_cols=69 Identities=9% Similarity=0.016 Sum_probs=43.9
Q ss_pred cCcceEEEEeCCCCCC---CHHHHHHHHHHHHHHHHcCCeEEecCCCCChhHHH--HHHHHhcCCeEEEEecCcC
Q 028256 16 SRFKRVCVFCGSSPGK---SPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLV--SQAVYDGGRHVLGVIPKTL 85 (211)
Q Consensus 16 ~~~~~I~Vfggs~~~~---~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~--a~gA~~~gG~viGv~P~~~ 85 (211)
....-|.|.|++.... .++..+..+...+. +.....|+.|-|..+.-+++ ++.|.+.|..-+-++|..+
T Consensus 41 ~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~-~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y 114 (309)
T cd00952 41 AGVDGILTMGTFGECATLTWEEKQAFVATVVET-VAGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMW 114 (309)
T ss_pred cCCCEEEECcccccchhCCHHHHHHHHHHHHHH-hCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCcC
Confidence 3455677776655442 34554444433333 44568888888866887776 4667888988888876544
No 298
>PRK13057 putative lipid kinase; Reviewed
Probab=29.64 E-value=1.1e+02 Score=26.41 Aligned_cols=32 Identities=28% Similarity=0.517 Sum_probs=23.3
Q ss_pred hcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEe
Q 028256 114 QADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLN 151 (211)
Q Consensus 114 ~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~ 151 (211)
..| .|+.-||=||++|+...+. ..+.|+.++-
T Consensus 50 ~~d-~iiv~GGDGTv~~v~~~l~-----~~~~~lgiiP 81 (287)
T PRK13057 50 GVD-LVIVGGGDGTLNAAAPALV-----ETGLPLGILP 81 (287)
T ss_pred CCC-EEEEECchHHHHHHHHHHh-----cCCCcEEEEC
Confidence 345 5667899999999987664 1356888873
No 299
>cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK). The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition.
Probab=29.60 E-value=3.2e+02 Score=22.52 Aligned_cols=35 Identities=29% Similarity=0.290 Sum_probs=18.3
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcC--CeEEecCCC
Q 028256 24 FCGSSPGKSPSYQLAAIQLGKQLVERN--IDLVYGGGS 59 (211)
Q Consensus 24 fggs~~~~~~~~~~~A~~lG~~la~~g--~~lv~GGg~ 59 (211)
||||.....+.+.+.++.+..+ .+.| ..||.|||+
T Consensus 4 iGGs~l~~~~~~~~~~~~i~~l-~~~~~~~viV~ggg~ 40 (248)
T cd02115 4 FGGSSVSSEERLRNLARILVKL-ASEGGRVVVVHGAGP 40 (248)
T ss_pred eCccccCCHHHHHHHHHHHHHH-HhcCCCEEEEECCCC
Confidence 6677765334444444444332 2233 566888876
No 300
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=29.57 E-value=3.6e+02 Score=23.00 Aligned_cols=117 Identities=16% Similarity=0.167 Sum_probs=66.8
Q ss_pred HhhhhcCcceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeE--EecCCCCChhHHHHHHHHhcCCeEEEEecCcCCCC
Q 028256 11 AAALKSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDL--VYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPR 88 (211)
Q Consensus 11 ~~~~~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~l--v~GGg~~GlM~a~a~gA~~~gG~viGv~P~~~~~~ 88 (211)
-.......+.|.|+-+- ++ +.|..+++.|.+.|+.. ||==.+ .--++...-+.+.+...||-- +.+.+.
T Consensus 6 ~~~~l~~~~vI~Vlr~~----~~---e~a~~~a~Ali~gGi~~IEITl~sp-~a~e~I~~l~~~~p~~lIGAG-TVL~~~ 76 (211)
T COG0800 6 ILSKLKAQPVVPVIRGD----DV---EEALPLAKALIEGGIPAIEITLRTP-AALEAIRALAKEFPEALIGAG-TVLNPE 76 (211)
T ss_pred HHHHHHHCCeeEEEEeC----CH---HHHHHHHHHHHHcCCCeEEEecCCC-CHHHHHHHHHHhCcccEEccc-cccCHH
Confidence 33444456789999542 23 46788999999988876 333334 666777776777776666641 111111
Q ss_pred C--CCCCCCceeeecCCHHHHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHH
Q 028256 89 E--ITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWA 138 (211)
Q Consensus 89 e--~~~~~~~~~~~~~~~~~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~ 138 (211)
. ....-=.++++.++++..-....... .+..+|| .-|..|++.++.+-
T Consensus 77 q~~~a~~aGa~fiVsP~~~~ev~~~a~~~-~ip~~PG-~~TptEi~~Ale~G 126 (211)
T COG0800 77 QARQAIAAGAQFIVSPGLNPEVAKAANRY-GIPYIPG-VATPTEIMAALELG 126 (211)
T ss_pred HHHHHHHcCCCEEECCCCCHHHHHHHHhC-CCcccCC-CCCHHHHHHHHHcC
Confidence 0 00111124556666654433333333 3666775 67899999888643
No 301
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=29.50 E-value=4e+02 Score=23.56 Aligned_cols=46 Identities=11% Similarity=0.096 Sum_probs=33.9
Q ss_pred hhhhcCcceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEecCCC
Q 028256 12 AALKSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGS 59 (211)
Q Consensus 12 ~~~~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~ 59 (211)
.-..++...|+|+-. . ..++-|.+...-+.+.+.++|+.++..-..
T Consensus 52 ~L~~~~s~~Ig~i~p-~-~~~~~~~~i~~gi~~~~~~~gy~~~l~~~~ 97 (333)
T COG1609 52 SLRTGRTKTIGLVVP-D-ITNPFFAEILKGIEEAAREAGYSLLLANTD 97 (333)
T ss_pred HHHhCCCCEEEEEeC-C-CCCchHHHHHHHHHHHHHHcCCEEEEECCC
Confidence 334446678999865 2 335788888889999999999998777654
No 302
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=29.50 E-value=4.2e+02 Score=27.17 Aligned_cols=77 Identities=13% Similarity=0.176 Sum_probs=37.4
Q ss_pred CcHHHHHHHHHHHHhC-C-CCCcEEEEe-CCccchhHHHHHHHHHHcCCCCcccccceEEcCCHHHHHHHhhhhccCcee
Q 028256 126 GTLEELLEVITWAQLG-I-HDKPVGLLN-VDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKLEVFFFFFFW 202 (211)
Q Consensus 126 GTL~El~~~~~~~~lg-~-~~kPiill~-~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee~~~~l~~~~~~~~~ 202 (211)
+..+++-++.....+. . .++.|+|++ .+.+-..-.+.|-+.+++ .+...-+|..+++++.++.-|++. +.
T Consensus 100 ~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEE---pP~~~~fIl~tt~~~kLl~TIrSR----c~ 172 (824)
T PRK07764 100 GGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEE---PPEHLKFIFATTEPDKVIGTIRSR----TH 172 (824)
T ss_pred CCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhC---CCCCeEEEEEeCChhhhhHHHHhh----ee
Confidence 4456665543333322 1 345677764 333333322222222222 233445566777787766666543 55
Q ss_pred EEeeeec
Q 028256 203 LFSFSVL 209 (211)
Q Consensus 203 ~~~~~~~ 209 (211)
.|+|.++
T Consensus 173 ~v~F~~l 179 (824)
T PRK07764 173 HYPFRLV 179 (824)
T ss_pred EEEeeCC
Confidence 6666654
No 303
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=29.33 E-value=1.4e+02 Score=23.71 Aligned_cols=20 Identities=30% Similarity=0.635 Sum_probs=10.5
Q ss_pred hHHHHHHHHhcCCeEEEEec
Q 028256 63 MGLVSQAVYDGGRHVLGVIP 82 (211)
Q Consensus 63 M~a~a~gA~~~gG~viGv~P 82 (211)
|+.+.+-..+.|..++|-.|
T Consensus 100 ~~~l~~~l~~~G~~~ig~~~ 119 (167)
T TIGR01752 100 MGILYDKIKARGAKVVGFWP 119 (167)
T ss_pred HHHHHHHHHHcCCeEEceec
Confidence 44444444455666666543
No 304
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=29.22 E-value=1.9e+02 Score=24.04 Aligned_cols=67 Identities=15% Similarity=0.083 Sum_probs=39.5
Q ss_pred HHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHhC-CCCCcEEEEeCCccchhHHHHHHHHHHcCCCCcccccceEEcC
Q 028256 106 QRKAEMARQADAFIALPGGYGTLEELLEVITWAQLG-IHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQ 184 (211)
Q Consensus 106 ~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg-~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~ 184 (211)
++....++.+|.+|+++ -.++. .-++.+...- ..+.|++++|.+.-. ++ ...-+.+..
T Consensus 156 ~~~~~~~~~~dl~lvlG-Tsl~v---~p~~~l~~~~~~~~~~~i~iN~~~~~---------------~~--~~~~~~i~g 214 (224)
T cd01412 156 LEAVEALAKADLFLVIG-TSGVV---YPAAGLPEEAKERGARVIEINPEPTP---------------LS--PIADFAFRG 214 (224)
T ss_pred HHHHHHHHcCCEEEEEC-cCccc---hhHHHHHHHHHHCCCeEEEECCCCCC---------------CC--CcCCEEEEC
Confidence 34445567899888865 33333 3333333321 357899999986211 11 223467788
Q ss_pred CHHHHHHHh
Q 028256 185 TAHELICKL 193 (211)
Q Consensus 185 d~ee~~~~l 193 (211)
+..|+++.|
T Consensus 215 ~~~~~l~~l 223 (224)
T cd01412 215 KAGEVLPAL 223 (224)
T ss_pred CHHHHHHHh
Confidence 899988765
No 305
>PRK06924 short chain dehydrogenase; Provisional
Probab=29.22 E-value=93 Score=25.48 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=0.0
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEE
Q 028256 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV 54 (211)
Q Consensus 18 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv 54 (211)
|++|.|.|+++ -..+.+++.|+++|+.|+
T Consensus 1 ~k~vlItGasg--------giG~~ia~~l~~~g~~V~ 29 (251)
T PRK06924 1 MRYVIITGTSQ--------GLGEAIANQLLEKGTHVI 29 (251)
T ss_pred CcEEEEecCCc--------hHHHHHHHHHHhcCCEEE
No 306
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=29.13 E-value=1.6e+02 Score=24.08 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=26.0
Q ss_pred hcCEEEEecCCcCcHHHHHHHHH-------HHHhCCCCCcEEEE
Q 028256 114 QADAFIALPGGYGTLEELLEVIT-------WAQLGIHDKPVGLL 150 (211)
Q Consensus 114 ~sDa~IvlpGG~GTL~El~~~~~-------~~~lg~~~kPiill 150 (211)
.+|++|+.|-...|+.-+..-++ ..+....++|++++
T Consensus 78 ~~D~~vVaPaTaNtlakiA~GiaD~l~t~~~~~~lk~~~pvvi~ 121 (174)
T TIGR02699 78 KYDFLLIAPATANTVAKIAYGIADTLVTNAVIQAAKAKVPVYIM 121 (174)
T ss_pred ccCEEEEEeCCHHHHHHHHccccCcHHHHHHHHHhccCCCEEEE
Confidence 47999999999999988764332 11112357899987
No 307
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=29.01 E-value=4.4e+02 Score=23.92 Aligned_cols=54 Identities=17% Similarity=0.235 Sum_probs=30.5
Q ss_pred ChhHHHHHHHHhcCCeEEEEecCcCCCCCCCCCCCceeeecCCHHHHHHHHHHhcCEEEEec
Q 028256 61 GLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALP 122 (211)
Q Consensus 61 GlM~a~a~gA~~~gG~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~Rk~~m~~~sDa~Ivlp 122 (211)
|.=-.+++-|.+.+-.+++|.|..+. .|.... ...-..-...|.+.+|.+|+++
T Consensus 118 G~apvia~~ake~~~l~vaivt~Pf~-~Eg~~r-------~~nA~~~l~~L~~~~D~vivid 171 (349)
T TIGR00065 118 GAAPVVAKIAKELGALTVAVVTKPFK-FEGLKR-------RKKAEEGLERLKQAVDTLIVIP 171 (349)
T ss_pred hHHHHHHHHHHHcCCCEEEEEeCCcc-ccchhh-------HHHHHHHHHHHHHhCCEEEEEe
Confidence 55556678888888889998653321 121100 0011233445567788888775
No 308
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=28.61 E-value=68 Score=30.00 Aligned_cols=41 Identities=29% Similarity=0.380 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHcCCeEEecCCC----------CChhHHHHHHHHhcCCeE
Q 028256 37 LAAIQLGKQLVERNIDLVYGGGS----------IGLMGLVSQAVYDGGRHV 77 (211)
Q Consensus 37 ~~A~~lG~~la~~g~~lv~GGg~----------~GlM~a~a~gA~~~gG~v 77 (211)
+-|+.|++.|.++|+.||+||-. .|+-+..++.+++.-+.+
T Consensus 291 ~NAkaLAe~l~~~G~~vvsGgTdnHl~lVDl~~~~~~Gk~ae~~L~~~~It 341 (413)
T COG0112 291 KNAKALAEALKERGFKVVSGGTDNHLVLVDLRSKGLTGKKAEAALERAGIT 341 (413)
T ss_pred HHHHHHHHHHHHcCCeEecCCccceEEEEEcccCCCCHHHHHHHHHHcCEe
Confidence 34667788888899999998742 266677777777764433
No 309
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=28.59 E-value=4.9e+02 Score=24.28 Aligned_cols=151 Identities=17% Similarity=0.200 Sum_probs=79.8
Q ss_pred cCcceEEEEeCCCCC-CCHHHHHHHHHHHHHHHH---cCCeEEecCCC-CChhHHHHHHHHh--cCC----eEEEEecCc
Q 028256 16 SRFKRVCVFCGSSPG-KSPSYQLAAIQLGKQLVE---RNIDLVYGGGS-IGLMGLVSQAVYD--GGR----HVLGVIPKT 84 (211)
Q Consensus 16 ~~~~~I~Vfggs~~~-~~~~~~~~A~~lG~~la~---~g~~lv~GGg~-~GlM~a~a~gA~~--~gG----~viGv~P~~ 84 (211)
+|..++-|--..... .+..| --||..+.+ .++.++.|... ...-..=+-+|.- .|+ .+.||.|+.
T Consensus 179 nR~~~~~v~v~~~~~~d~~~~----~~LG~~iG~~~~~~IPvi~g~~~~p~~d~lK~lgAA~Atsgs~~m~Hi~GvTPEa 254 (400)
T PF04412_consen 179 NRRATILVEVEAPPEEDDADW----GLLGYLIGKKVGDRIPVITGLERRPSEDDLKALGAAMATSGSVAMFHIVGVTPEA 254 (400)
T ss_pred CCCCeEEEEeCCCCCcCcchH----HHHHHHHHHhcCCCcCeEeCCCCCCCHHHHHHHhhhhhcccceeeEEEeCCCCCC
Confidence 556667666555543 23333 357776665 48999999854 2444444444433 233 567888875
Q ss_pred CCCCCCCCCCCceeeec-CCHH-HHHHHH-HHhcCE-EEEecCCcCcHHHHHHHHHHHHhCC--CCCcEEEEeCCccchh
Q 028256 85 LMPREITGDTVGEVKAV-SGMH-QRKAEM-ARQADA-FIALPGGYGTLEELLEVITWAQLGI--HDKPVGLLNVDGYYNS 158 (211)
Q Consensus 85 ~~~~e~~~~~~~~~~~~-~~~~-~Rk~~m-~~~sDa-~IvlpGG~GTL~El~~~~~~~~lg~--~~kPiill~~~g~~~~ 158 (211)
-...+........+.+. +++. .++.+- ....+. +|+|+.=-=|++|+.++..+..-.. ..+|+++.-....+..
T Consensus 255 ~~~~~a~~~~~e~i~i~~~dl~~~~~~l~~~~~~~~D~V~lGcPH~S~~El~~ia~ll~gr~~~~~~~~~i~t~~~v~~~ 334 (400)
T PF04412_consen 255 PTLEAAFGGKAERITITDADLEEVYEELNTAGDEKVDLVALGCPHLSLEELREIAELLEGRKVHPNVPLWITTSRAVYEL 334 (400)
T ss_pred CcchhhhcCCceEEEeCHHHHHHHHHHhccCCCCCCCEEEECCCCCCHHHHHHHHHHHhCCCCCCCceEEEECCHHHHHH
Confidence 32211111112222222 2332 222220 122233 6777666789999999887766544 4678888755434444
Q ss_pred HHH--HHHHHHHcC
Q 028256 159 LLS--FIDKAVDEG 170 (211)
Q Consensus 159 l~~--~l~~~~~~g 170 (211)
... +++.+.+.|
T Consensus 335 a~~~G~~~~le~~G 348 (400)
T PF04412_consen 335 AERMGYVERLEKAG 348 (400)
T ss_pred HHhCCHHHHHHHcC
Confidence 333 344444444
No 310
>PRK06756 flavodoxin; Provisional
Probab=28.54 E-value=1.5e+02 Score=22.72 Aligned_cols=17 Identities=12% Similarity=0.268 Sum_probs=8.8
Q ss_pred hHHHHHHHHhcCCeEEE
Q 028256 63 MGLVSQAVYDGGRHVLG 79 (211)
Q Consensus 63 M~a~a~gA~~~gG~viG 79 (211)
+....+...+.|..+++
T Consensus 103 ~~~l~~~l~~~g~~~v~ 119 (148)
T PRK06756 103 VDILIEKLQERGAAVVL 119 (148)
T ss_pred HHHHHHHHHHCCCEEcC
Confidence 34444444556666655
No 311
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=28.51 E-value=1.2e+02 Score=25.06 Aligned_cols=34 Identities=3% Similarity=-0.039 Sum_probs=19.7
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEe
Q 028256 20 RVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVY 55 (211)
Q Consensus 20 ~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~ 55 (211)
+|+|+..+. .++-+.+....+-+.+.+.|+.++.
T Consensus 1 ~igvi~~~~--~~~~~~~~~~gi~~~~~~~g~~~~~ 34 (275)
T cd06320 1 KYGVVLKTL--SNEFWRSLKEGYENEAKKLGVSVDI 34 (275)
T ss_pred CeeEEEecC--CCHHHHHHHHHHHHHHHHhCCeEEE
Confidence 356665332 2555555566666666667776643
No 312
>PRK05866 short chain dehydrogenase; Provisional
Probab=28.43 E-value=2.2e+02 Score=24.47 Aligned_cols=54 Identities=22% Similarity=0.289 Sum_probs=29.3
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEecCCCCChhHHHHHHHHhcCCeEEEE
Q 028256 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (211)
Q Consensus 19 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~a~gA~~~gG~viGv 80 (211)
++|-|.|+++ + ....+++.|+++|+.|+..+-...-.+...+.....++.+..+
T Consensus 41 k~vlItGasg-g-------IG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~ 94 (293)
T PRK05866 41 KRILLTGASS-G-------IGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAV 94 (293)
T ss_pred CEEEEeCCCc-H-------HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEE
Confidence 5566666544 2 3467778888889988766533222233333333335554443
No 313
>KOG2683 consensus Sirtuin 4 and related class II sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=28.43 E-value=93 Score=27.36 Aligned_cols=41 Identities=20% Similarity=0.355 Sum_probs=27.2
Q ss_pred HHHHhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCC
Q 028256 110 EMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD 153 (211)
Q Consensus 110 ~m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~~ 153 (211)
-++..||++++|+-+.=+++-+-.+.. ....++||.++|++
T Consensus 242 ~~v~e~dg~LvlGsSL~v~Sg~r~i~~---a~~~k~pi~IvNIG 282 (305)
T KOG2683|consen 242 EKVKECDGFLVLGSSLMVLSGFRFIRH---AHEKKKPIAIVNIG 282 (305)
T ss_pred HHHhccCceEEechhHHHHHHHHHHHH---HHhhcCcEEEEecC
Confidence 457789999999766655554433222 11247899999985
No 314
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=28.33 E-value=4.2e+02 Score=23.43 Aligned_cols=36 Identities=25% Similarity=0.439 Sum_probs=26.8
Q ss_pred HHHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHhCC
Q 028256 105 HQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGI 142 (211)
Q Consensus 105 ~~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~ 142 (211)
++|.+.+-+..|.-+||-||+|+-+|-+... .+.|.
T Consensus 195 ~~~L~~I~~~v~vPLVlHGgSG~~~e~~~~a--i~~Gi 230 (288)
T TIGR00167 195 FERLEEIQKYVNLPLVLHGGSGIPDEEIKKA--ISLGV 230 (288)
T ss_pred HHHHHHHHHHhCCCEEEeCCCCCCHHHHHHH--HHcCC
Confidence 4677777777899999999999998766533 34443
No 315
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=28.29 E-value=63 Score=28.15 Aligned_cols=112 Identities=15% Similarity=0.209 Sum_probs=57.8
Q ss_pred cceEEEEeCCCCC-CCHHHHHHHHHHHHHHHHcCCeEEecCCCCChhHHHHHHHHhcCCeEEEEecCcCCCCCCCCCCCc
Q 028256 18 FKRVCVFCGSSPG-KSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVG 96 (211)
Q Consensus 18 ~~~I~Vfggs~~~-~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~a~gA~~~gG~viGv~P~~~~~~e~~~~~~~ 96 (211)
.-++=|.+....- +|+ + ...+-.+.|.+.|+.|.-=..+ .=.+++.-.++|-.+ |.|-. .|.. ....+
T Consensus 93 wIKLEVi~D~~~L~PD~-~--etl~Aae~Lv~eGF~VlPY~~~---D~v~akrL~d~Gcaa--vMPlg-sPIG-Sg~Gi- 161 (247)
T PF05690_consen 93 WIKLEVIGDDKTLLPDP-I--ETLKAAEILVKEGFVVLPYCTD---DPVLAKRLEDAGCAA--VMPLG-SPIG-SGRGI- 161 (247)
T ss_dssp EEEE--BS-TTT--B-H-H--HHHHHHHHHHHTT-EEEEEE-S----HHHHHHHHHTT-SE--BEEBS-SSTT-T---S-
T ss_pred eEEEEEeCCCCCcCCCh-h--HHHHHHHHHHHCCCEEeecCCC---CHHHHHHHHHCCCCE--EEecc-cccc-cCcCC-
Confidence 3456666554432 233 1 2345677788888887522222 445677777777653 34421 1111 00010
Q ss_pred eeeecCCHHHHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeC
Q 028256 97 EVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 152 (211)
Q Consensus 97 ~~~~~~~~~~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~ 152 (211)
. + ..--+++++.+|.-|++-+|+||.++..+++. .+-=-+|+|+
T Consensus 162 ---~--n-~~~l~~i~~~~~vPvIvDAGiG~pSdaa~AME------lG~daVLvNT 205 (247)
T PF05690_consen 162 ---Q--N-PYNLRIIIERADVPVIVDAGIGTPSDAAQAME------LGADAVLVNT 205 (247)
T ss_dssp ---S--T-HHHHHHHHHHGSSSBEEES---SHHHHHHHHH------TT-SEEEESH
T ss_pred ---C--C-HHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHH------cCCceeehhh
Confidence 0 0 23356677888999999999999999999887 3445577776
No 316
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.28 E-value=2.1e+02 Score=25.29 Aligned_cols=35 Identities=17% Similarity=0.188 Sum_probs=26.7
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEec
Q 028256 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYG 56 (211)
Q Consensus 19 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~G 56 (211)
|+|+|+. +.. .+...+.+.++.++|.++|+.++.-
T Consensus 1 m~igii~--~~~-~~~~~~~~~~i~~~l~~~g~~v~~~ 35 (292)
T PRK01911 1 MKIAIFG--QTY-QESASPYIQELFDELEERGAEVLIE 35 (292)
T ss_pred CEEEEEe--CCC-CHHHHHHHHHHHHHHHHCCCEEEEe
Confidence 4689984 322 4566688999999999999998864
No 317
>PRK13054 lipid kinase; Reviewed
Probab=28.19 E-value=1.7e+02 Score=25.53 Aligned_cols=34 Identities=21% Similarity=0.308 Sum_probs=22.5
Q ss_pred cCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEE
Q 028256 115 ADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLL 150 (211)
Q Consensus 115 sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill 150 (211)
.| .|+.-||=||++|+...+.-... ....|+.++
T Consensus 57 ~d-~vvv~GGDGTl~evv~~l~~~~~-~~~~~lgii 90 (300)
T PRK13054 57 VA-TVIAGGGDGTINEVATALAQLEG-DARPALGIL 90 (300)
T ss_pred CC-EEEEECCccHHHHHHHHHHhhcc-CCCCcEEEE
Confidence 45 66788999999999877631111 123577777
No 318
>PRK10494 hypothetical protein; Provisional
Probab=27.96 E-value=1.3e+02 Score=26.03 Aligned_cols=11 Identities=45% Similarity=0.915 Sum_probs=7.2
Q ss_pred cCEEEEecCCc
Q 028256 115 ADAFIALPGGY 125 (211)
Q Consensus 115 sDa~IvlpGG~ 125 (211)
+|++|||+||.
T Consensus 79 ~d~IVVLGgG~ 89 (259)
T PRK10494 79 VDYIVVLGGGY 89 (259)
T ss_pred CCEEEEcCCCc
Confidence 56677776664
No 319
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=27.96 E-value=1.3e+02 Score=24.87 Aligned_cols=34 Identities=15% Similarity=0.200 Sum_probs=23.6
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEE
Q 028256 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV 54 (211)
Q Consensus 18 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv 54 (211)
|+.|+|+ +..-|.... ..|..||..||++|+.++
T Consensus 1 m~iI~v~-s~KGGvGKT--t~a~nla~~la~~g~~Vl 34 (246)
T TIGR03371 1 MKVIAIV-GVKGGVGKT--TLTANLASALKLLGEPVL 34 (246)
T ss_pred CcEEEEE-eCCCCccHH--HHHHHHHHHHHhCCCcEE
Confidence 4567777 444454443 468899999999998653
No 320
>PRK07109 short chain dehydrogenase; Provisional
Probab=27.94 E-value=2.4e+02 Score=24.80 Aligned_cols=56 Identities=14% Similarity=0.186 Sum_probs=32.2
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEecCCCCChhHHHHHHHHhcCCeEEEEe
Q 028256 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVI 81 (211)
Q Consensus 18 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~a~gA~~~gG~viGv~ 81 (211)
.++|.|.|+|+ + ....+++.|+++|+.|+.-+-..--.+...+...+.|+++..+.
T Consensus 8 ~k~vlITGas~-g-------IG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~ 63 (334)
T PRK07109 8 RQVVVITGASA-G-------VGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVV 63 (334)
T ss_pred CCEEEEECCCC-H-------HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEE
Confidence 35677776554 2 34678888899999987654321112233333344566666553
No 321
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=27.76 E-value=3.2e+02 Score=23.89 Aligned_cols=30 Identities=23% Similarity=0.393 Sum_probs=18.6
Q ss_pred CCeEEecCCCCChhHHHHHHHHhcCCeEEEEe
Q 028256 50 NIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVI 81 (211)
Q Consensus 50 g~~lv~GGg~~GlM~a~a~gA~~~gG~viGv~ 81 (211)
...+|+|+|+.|+ ++..-|+..|.+++.+.
T Consensus 168 ~~VlV~G~G~vG~--~a~~~a~~~G~~vi~~~ 197 (349)
T TIGR03201 168 DLVIVIGAGGVGG--YMVQTAKAMGAAVVAID 197 (349)
T ss_pred CEEEEECCCHHHH--HHHHHHHHcCCeEEEEc
Confidence 3456777654343 34566777788877763
No 322
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=27.76 E-value=1.1e+02 Score=27.68 Aligned_cols=41 Identities=12% Similarity=0.226 Sum_probs=33.0
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEecCCC
Q 028256 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGS 59 (211)
Q Consensus 19 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~ 59 (211)
++|.++|.++....--+..+...|++.|.+.|+.+++=+.+
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~ 41 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQ 41 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhcCceEEEeccc
Confidence 46888888877666566677889999999999999887755
No 323
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=27.55 E-value=4.9e+02 Score=23.92 Aligned_cols=114 Identities=15% Similarity=0.048 Sum_probs=62.4
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEe---cCCC----CC-------hhHHHHHHHHhcCCeEEEEecCcC
Q 028256 20 RVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVY---GGGS----IG-------LMGLVSQAVYDGGRHVLGVIPKTL 85 (211)
Q Consensus 20 ~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~---GGg~----~G-------lM~a~a~gA~~~gG~viGv~P~~~ 85 (211)
.+.||-||... .+..+...++.++.-+.|..++- -=|+ .+ +..-+++-|.+.|..+|=+-+...
T Consensus 164 ~~tvy~Gs~~E--~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELGADIVKv~yp~~ 241 (348)
T PRK09250 164 GATIYFGSEES--RRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATIGADIIKQKLPTN 241 (348)
T ss_pred EEEEecCCHHH--HHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHHcCCEEEecCCCC
Confidence 45667665432 22333444555555667888763 2221 12 566677788888999888843211
Q ss_pred -CCCCC-----CCCCCceeeecCCHHHHHHHHHHhc---CEEEEecCCc-CcHHHHHHHH
Q 028256 86 -MPREI-----TGDTVGEVKAVSGMHQRKAEMARQA---DAFIALPGGY-GTLEELLEVI 135 (211)
Q Consensus 86 -~~~e~-----~~~~~~~~~~~~~~~~Rk~~m~~~s---Da~IvlpGG~-GTL~El~~~~ 135 (211)
...+. ......+.+..++..+|-+..++.| ..-|++-||. -+.+|+++..
T Consensus 242 ~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~L~~v 301 (348)
T PRK09250 242 NGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGASKGEDDLLDAV 301 (348)
T ss_pred hhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCCCCCCHHHHHHHH
Confidence 00000 0111123344567788999889987 5655555554 3555555443
No 324
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=27.48 E-value=2.3e+02 Score=26.44 Aligned_cols=52 Identities=21% Similarity=0.249 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHcCCeE---EecCCCCChhHHHHHHHHhcCCeEEEEecCc
Q 028256 33 PSYQLAAIQLGKQLVERNIDL---VYGGGSIGLMGLVSQAVYDGGRHVLGVIPKT 84 (211)
Q Consensus 33 ~~~~~~A~~lG~~la~~g~~l---v~GGg~~GlM~a~a~gA~~~gG~viGv~P~~ 84 (211)
+-....+.+|-..+-++--+| |||+|..-+|=.+.+.|++.||+|.=..|..
T Consensus 100 ~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRv 154 (441)
T COG4098 100 PGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRV 154 (441)
T ss_pred hhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcc
Confidence 444567788888888876665 8999999999999999999999987767753
No 325
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=27.36 E-value=2e+02 Score=23.97 Aligned_cols=52 Identities=27% Similarity=0.353 Sum_probs=29.1
Q ss_pred cCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCC
Q 028256 115 ADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFI 172 (211)
Q Consensus 115 sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i 172 (211)
.| .|+++|| |+++|+++++ |..+..-+ -++.|.- --+.+...++.+.+.|+.
T Consensus 103 ~d-aiFIGGg-~~i~~ile~~-~~~l~~gg--rlV~nai-tlE~~~~a~~~~~~~g~~ 154 (187)
T COG2242 103 PD-AIFIGGG-GNIEEILEAA-WERLKPGG--RLVANAI-TLETLAKALEALEQLGGR 154 (187)
T ss_pred CC-EEEECCC-CCHHHHHHHH-HHHcCcCC--eEEEEee-cHHHHHHHHHHHHHcCCc
Confidence 34 4666777 9999999976 44443322 3444542 113344445556666663
No 326
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=27.35 E-value=47 Score=25.65 Aligned_cols=35 Identities=23% Similarity=0.395 Sum_probs=19.1
Q ss_pred EEEecCCcCcHHHHH-H---HHHHHHhC-CCCCcEEEEeC
Q 028256 118 FIALPGGYGTLEELL-E---VITWAQLG-IHDKPVGLLNV 152 (211)
Q Consensus 118 ~IvlpGG~GTL~El~-~---~~~~~~lg-~~~kPiill~~ 152 (211)
.|++|||.|..+-+. . ...+.+-- .++|||..+-.
T Consensus 40 alilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~ 79 (147)
T PF01965_consen 40 ALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICH 79 (147)
T ss_dssp EEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETT
T ss_pred EEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCC
Confidence 788999999666555 2 22222211 25789887743
No 327
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=27.29 E-value=2.6e+02 Score=23.27 Aligned_cols=40 Identities=23% Similarity=0.313 Sum_probs=25.9
Q ss_pred HHHHHHHHhcCEEEEecC--CcCcHHHHHHHHHHHHhCCCCCcEEEEeCC
Q 028256 106 QRKAEMARQADAFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLLNVD 153 (211)
Q Consensus 106 ~Rk~~m~~~sDa~IvlpG--G~GTL~El~~~~~~~~lg~~~kPiill~~~ 153 (211)
+....+...||++|.... +.|+ =+.|+++ .++||+..+..
T Consensus 270 ~~~~~~~~~ad~~l~~s~~e~~~~--~~~Ea~~------~g~PvI~~~~~ 311 (374)
T cd03817 270 EELPDYYKAADLFVFASTTETQGL--VLLEAMA------AGLPVVAVDAP 311 (374)
T ss_pred HHHHHHHHHcCEEEecccccCcCh--HHHHHHH------cCCcEEEeCCC
Confidence 445566788998775432 2332 2666676 79999988764
No 328
>PRK07890 short chain dehydrogenase; Provisional
Probab=27.29 E-value=2.3e+02 Score=23.11 Aligned_cols=54 Identities=22% Similarity=0.174 Sum_probs=0.0
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEecCCCCChhHHHHHHHHhcCCeEEEE
Q 028256 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (211)
Q Consensus 19 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~a~gA~~~gG~viGv 80 (211)
++|.|.|+++.. .+.+++.|+++|+.|+..+-...-.+.........+.++..+
T Consensus 6 k~vlItGa~~~I--------G~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~ 59 (258)
T PRK07890 6 KVVVVSGVGPGL--------GRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAV 59 (258)
T ss_pred CEEEEECCCCcH--------HHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEE
No 329
>cd00432 Ribosomal_L18_L5e Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit. L18 binds 5S rRNA and induces a conformational change that stimulates the binding of L5 to 5S rRNA. Association of 5S rRNA with 23S rRNA depends on the binding of L18 and L5 to 5S rRNA. L18/L5e is generally described as L18 in prokaryotes and archaea, and as L5e (or L5) in eukaryotes. In bacteria, the CP proteins L5, L18, and L25 are required for the ribosome to incorporate 5S rRNA into the large subunit, one of the last steps in ribosome assembly. In archaea, both L18 and L5 bind 5S rRNA; in eukaryotes, only the L18 homolog (L5e) binds 5S rRNA but a homolog to L5 is also identified.
Probab=27.28 E-value=1.3e+02 Score=22.01 Aligned_cols=38 Identities=32% Similarity=0.468 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHc----CCeE-E--ecCCC-CChhHHHHHHHHhcC
Q 028256 37 LAAIQLGKQLVER----NIDL-V--YGGGS-IGLMGLVSQAVYDGG 74 (211)
Q Consensus 37 ~~A~~lG~~la~~----g~~l-v--~GGg~-~GlM~a~a~gA~~~g 74 (211)
+.|+.+|+.||++ |+.- + -|+-. .|-+.|+++++.++|
T Consensus 57 ~aA~~vG~~la~r~~~~gi~~vv~D~~~~~~~grv~a~~~~~r~~G 102 (103)
T cd00432 57 EAAYLVGRLLAKRALEKGIKKVVFDRGGYRYHGRVKALAKGAREGG 102 (103)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEeCCCcccccHHHHHHHHHHHcC
Confidence 6788888888863 3322 1 13221 488999999999986
No 330
>PRK07677 short chain dehydrogenase; Provisional
Probab=27.02 E-value=98 Score=25.53 Aligned_cols=31 Identities=29% Similarity=0.380 Sum_probs=19.5
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEecC
Q 028256 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGG 57 (211)
Q Consensus 19 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GG 57 (211)
+++.|.|+++. ....+++.|+++|+.|+.-+
T Consensus 2 k~~lItG~s~g--------iG~~ia~~l~~~G~~Vi~~~ 32 (252)
T PRK07677 2 KVVIITGGSSG--------MGKAMAKRFAEEGANVVITG 32 (252)
T ss_pred CEEEEeCCCCh--------HHHHHHHHHHHCCCEEEEEe
Confidence 35666665442 34567777788888876543
No 331
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=26.83 E-value=1e+02 Score=25.30 Aligned_cols=27 Identities=19% Similarity=0.163 Sum_probs=20.0
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHHHH
Q 028256 18 FKRVCVFCGSSPGKSPSYQLAAIQLGK 44 (211)
Q Consensus 18 ~~~I~Vfggs~~~~~~~~~~~A~~lG~ 44 (211)
+++|+|||||=.+..--+...|+++-+
T Consensus 3 ~~~i~i~gGsFdP~H~GH~~l~~~a~~ 29 (203)
T PRK00071 3 MKRIGLFGGTFDPPHYGHLAIAEEAAE 29 (203)
T ss_pred CcEEEEEeeCCCccCHHHHHHHHHHHH
Confidence 568999999988877767666665544
No 332
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=26.81 E-value=94 Score=28.06 Aligned_cols=51 Identities=16% Similarity=0.299 Sum_probs=35.2
Q ss_pred hcCcceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEecCCCCChhHHHHHHHHh
Q 028256 15 KSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYD 72 (211)
Q Consensus 15 ~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~a~gA~~ 72 (211)
.++...-||.-|+.++... +.+++||++|+.++-=+-...=-+++++.-.+
T Consensus 45 ~~~~g~WAVVTGaTDGIGK-------ayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~ 95 (312)
T KOG1014|consen 45 KEKLGSWAVVTGATDGIGK-------AYARELAKRGFNVVLISRTQEKLEAVAKEIEE 95 (312)
T ss_pred HHhcCCEEEEECCCCcchH-------HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH
Confidence 3445577888788877654 44566788999988777665666777666544
No 333
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase
Probab=26.79 E-value=1.6e+02 Score=25.00 Aligned_cols=40 Identities=15% Similarity=-0.001 Sum_probs=31.8
Q ss_pred hcCcceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEE
Q 028256 15 KSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV 54 (211)
Q Consensus 15 ~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv 54 (211)
..+...|+|||||=.+..-.+...|+..-+.+...++.+|
T Consensus 18 ~~~~~~v~i~GGSFdP~H~gHl~ia~~a~~~l~~d~~~~v 57 (236)
T PLN02945 18 GPRTRVVLVATGSFNPPTYMHLRMFELARDALMSEGYHVL 57 (236)
T ss_pred cCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHhhcCcEEE
Confidence 4566789999999988888888888888888877776554
No 334
>PLN02271 serine hydroxymethyltransferase
Probab=26.73 E-value=66 Score=31.51 Aligned_cols=38 Identities=32% Similarity=0.422 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHcCCeEEecCCC----------CChhHHHHHHHHhcCC
Q 028256 38 AAIQLGKQLVERNIDLVYGGGS----------IGLMGLVSQAVYDGGR 75 (211)
Q Consensus 38 ~A~~lG~~la~~g~~lv~GGg~----------~GlM~a~a~gA~~~gG 75 (211)
-|+.|++.|.++|+.||+||-. .|+.+..++.+++.-|
T Consensus 443 NAkaLA~~L~~~G~~vv~ggTdnHlvLvDl~~~g~~G~~ae~~Le~~~ 490 (586)
T PLN02271 443 NAQALASALLRRKCRLVTGGTDNHLLLWDLTTLGLTGKNYEKVCEMCH 490 (586)
T ss_pred HHHHHHHHHHHCCCeEeeCCCCcceeeecCcccCCCHHHHHHHHHHcC
Confidence 3566788888899999998732 3566677776666543
No 335
>PLN02565 cysteine synthase
Probab=26.72 E-value=4.5e+02 Score=23.30 Aligned_cols=32 Identities=22% Similarity=0.272 Sum_probs=23.4
Q ss_pred eEEecCCCCChhHHHHHHHHhcC--CeEEEEecC
Q 028256 52 DLVYGGGSIGLMGLVSQAVYDGG--RHVLGVIPK 83 (211)
Q Consensus 52 ~lv~GGg~~GlM~a~a~gA~~~g--G~viGv~P~ 83 (211)
.+|.+.|..|++-.++++.++.+ -+++||-|.
T Consensus 175 ~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep~ 208 (322)
T PLN02565 175 AFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEPV 208 (322)
T ss_pred EEEEcCCchHHHHHHHHHHHHhCCCCEEEEEecC
Confidence 34445555699999999888764 588999774
No 336
>PHA01630 putative group 1 glycosyl transferase
Probab=26.65 E-value=1.7e+02 Score=26.08 Aligned_cols=42 Identities=10% Similarity=0.135 Sum_probs=31.7
Q ss_pred HHHHHHHHhcCEEEEe--cCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCcc
Q 028256 106 QRKAEMARQADAFIAL--PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGY 155 (211)
Q Consensus 106 ~Rk~~m~~~sDa~Ivl--pGG~GTL~El~~~~~~~~lg~~~kPiill~~~g~ 155 (211)
+....+...||++|.- ..|+|.. +.|+++ .++||+..+.+|.
T Consensus 201 ~~l~~~y~~aDv~v~pS~~E~fgl~--~lEAMA------~G~PVIas~~gg~ 244 (331)
T PHA01630 201 DDIYSLFAGCDILFYPVRGGAFEIP--VIEALA------LGLDVVVTEKGAW 244 (331)
T ss_pred HHHHHHHHhCCEEEECCccccCChH--HHHHHH------cCCCEEEeCCCCc
Confidence 5556678999998864 4666654 788888 7999999987653
No 337
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.63 E-value=2e+02 Score=25.70 Aligned_cols=53 Identities=25% Similarity=0.422 Sum_probs=31.9
Q ss_pred HhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCC--ccc-----hhHHHHHHHHHHcCC
Q 028256 113 RQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD--GYY-----NSLLSFIDKAVDEGF 171 (211)
Q Consensus 113 ~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~~--g~~-----~~l~~~l~~~~~~g~ 171 (211)
+.+|.+|+ -||=||+-..+... ..+.+||+=+|.+ ||. +++.+.++.+.+..|
T Consensus 71 ~~~D~vi~-lGGDGT~L~aar~~-----~~~~~PilGIN~G~lGFL~~~~~~~~~~~l~~i~~g~y 130 (306)
T PRK03372 71 DGCELVLV-LGGDGTILRAAELA-----RAADVPVLGVNLGHVGFLAEAEAEDLDEAVERVVDRDY 130 (306)
T ss_pred cCCCEEEE-EcCCHHHHHHHHHh-----ccCCCcEEEEecCCCceeccCCHHHHHHHHHHHHcCCc
Confidence 45775554 57889987665432 2357898888775 553 334455555554443
No 338
>PRK04155 chaperone protein HchA; Provisional
Probab=26.59 E-value=62 Score=28.63 Aligned_cols=34 Identities=32% Similarity=0.275 Sum_probs=20.8
Q ss_pred EEEEecCCcCcHHHHHHHHHHHHhC----CCCCcEEEE
Q 028256 117 AFIALPGGYGTLEELLEVITWAQLG----IHDKPVGLL 150 (211)
Q Consensus 117 a~IvlpGG~GTL~El~~~~~~~~lg----~~~kPiill 150 (211)
..|++|||.|.+..+.+.-.+.++- ..+|||+.+
T Consensus 149 DaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAI 186 (287)
T PRK04155 149 AAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITL 186 (287)
T ss_pred cEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEE
Confidence 3789999999977654432222221 256777655
No 339
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=26.58 E-value=1.3e+02 Score=25.12 Aligned_cols=33 Identities=15% Similarity=0.384 Sum_probs=23.7
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEE
Q 028256 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV 54 (211)
Q Consensus 18 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv 54 (211)
|++|+|+ + .-|... ...|..|+..||++|+.++
T Consensus 1 m~~iav~-~-KGGvGK--TT~~~nLA~~La~~G~kVl 33 (270)
T cd02040 1 MRQIAIY-G-KGGIGK--STTTQNLSAALAEMGKKVM 33 (270)
T ss_pred CcEEEEE-e-CCcCCH--HHHHHHHHHHHHhCCCeEE
Confidence 5678888 4 444443 2568899999999998653
No 340
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=26.58 E-value=1.2e+02 Score=26.56 Aligned_cols=40 Identities=30% Similarity=0.605 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHH-HHHHHHc
Q 028256 127 TLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSF-IDKAVDE 169 (211)
Q Consensus 127 TL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~-l~~~~~~ 169 (211)
|++.+++.+.-.+-.....|++++. ||+++..+ ++.+.++
T Consensus 70 ~~~~~~~~~~~ir~~~~~~pivlm~---Y~N~i~~~G~e~F~~~ 110 (259)
T PF00290_consen 70 TLEKIFELVKEIRKKEPDIPIVLMT---YYNPIFQYGIERFFKE 110 (259)
T ss_dssp -HHHHHHHHHHHHHHCTSSEEEEEE----HHHHHHH-HHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCCCEEEEe---eccHHhccchHHHHHH
No 341
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=26.56 E-value=3.8e+02 Score=22.30 Aligned_cols=73 Identities=16% Similarity=0.088 Sum_probs=43.5
Q ss_pred HHHHHHHHhcCEEEEecC-----CcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCCCcccccce
Q 028256 106 QRKAEMARQADAFIALPG-----GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYII 180 (211)
Q Consensus 106 ~Rk~~m~~~sDa~IvlpG-----G~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i 180 (211)
+....++..||++|.... |.+.-.=+.|+++ .++||+..+..+.-+.+. + .....+
T Consensus 286 ~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~------~G~pvi~~~~~~~~~~~~--------~-----~~~g~~ 346 (394)
T cd03794 286 EELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMA------AGKPVLASVDGESAELVE--------E-----AGAGLV 346 (394)
T ss_pred HHHHHHHHhhCeeEEeccCcccccccCchHHHHHHH------CCCcEEEecCCCchhhhc--------c-----CCcceE
Confidence 344456788998876533 2333334667777 799999987654322211 1 112223
Q ss_pred EEcCCHHHHHHHhhhhc
Q 028256 181 VSAQTAHELICKLEVFF 197 (211)
Q Consensus 181 ~~~~d~ee~~~~l~~~~ 197 (211)
.-.+|++++.+.|.+..
T Consensus 347 ~~~~~~~~l~~~i~~~~ 363 (394)
T cd03794 347 VPPGDPEALAAAILELL 363 (394)
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 44458888888887765
No 342
>PRK00208 thiG thiazole synthase; Reviewed
Probab=26.35 E-value=4.4e+02 Score=23.04 Aligned_cols=104 Identities=13% Similarity=0.208 Sum_probs=61.4
Q ss_pred cCcceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEE-ecCCCCChhHHHHHHHHhcCCeEEEEecCcCCCCCCCCCC
Q 028256 16 SRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV-YGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDT 94 (211)
Q Consensus 16 ~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv-~GGg~~GlM~a~a~gA~~~gG~viGv~P~~~~~~e~~~~~ 94 (211)
...-++=|.+......++. ....+-++.|++.|+.++ |-.- -+. .++...+.|-..+ .| .-.+... ...
T Consensus 91 ~~~iKlEVi~d~~~llpd~--~~tv~aa~~L~~~Gf~vlpyc~~--d~~--~ak~l~~~G~~~v--mP-lg~pIGs-g~g 160 (250)
T PRK00208 91 TNWIKLEVIGDDKTLLPDP--IETLKAAEILVKEGFVVLPYCTD--DPV--LAKRLEEAGCAAV--MP-LGAPIGS-GLG 160 (250)
T ss_pred CCeEEEEEecCCCCCCcCH--HHHHHHHHHHHHCCCEEEEEeCC--CHH--HHHHHHHcCCCEe--CC-CCcCCCC-CCC
Confidence 3345677786555433222 234567778888999988 6653 233 3444455565554 33 1111110 111
Q ss_pred CceeeecCCHHHHHHHHHHhcCEEEEecCCcCcHHHHHHHHH
Q 028256 95 VGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVIT 136 (211)
Q Consensus 95 ~~~~~~~~~~~~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~ 136 (211)
+ .+ .+..+.+.+..+.-|+..||++|.+++..++.
T Consensus 161 i------~~-~~~i~~i~e~~~vpVIveaGI~tpeda~~Ame 195 (250)
T PRK00208 161 L------LN-PYNLRIIIEQADVPVIVDAGIGTPSDAAQAME 195 (250)
T ss_pred C------CC-HHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHH
Confidence 1 11 44466666767899999999999999998886
No 343
>PRK05854 short chain dehydrogenase; Provisional
Probab=26.27 E-value=95 Score=27.02 Aligned_cols=19 Identities=11% Similarity=0.296 Sum_probs=14.5
Q ss_pred HHHHHHHHHHcCCeEEecC
Q 028256 39 AIQLGKQLVERNIDLVYGG 57 (211)
Q Consensus 39 A~~lG~~la~~g~~lv~GG 57 (211)
..++++.|+++|+.|+..+
T Consensus 27 G~~~a~~La~~G~~Vil~~ 45 (313)
T PRK05854 27 GLGLARRLAAAGAEVILPV 45 (313)
T ss_pred HHHHHHHHHHCCCEEEEEe
Confidence 4567788888999887655
No 344
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=26.18 E-value=3e+02 Score=21.17 Aligned_cols=19 Identities=11% Similarity=0.151 Sum_probs=15.6
Q ss_pred HHHHHHHHHHcCCeEEecC
Q 028256 39 AIQLGKQLVERNIDLVYGG 57 (211)
Q Consensus 39 A~~lG~~la~~g~~lv~GG 57 (211)
++.+.+.|.++|...|+|=
T Consensus 2 ~e~i~~~L~~~gv~~vfg~ 20 (160)
T cd07034 2 NEAVARGALAAGVDVVAAY 20 (160)
T ss_pred hHHHHHHHHHhCCCEEEEe
Confidence 3568888999999998886
No 345
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=26.11 E-value=1.1e+02 Score=22.67 Aligned_cols=39 Identities=13% Similarity=0.174 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHcCCeEEecCCCCChhHHHHHHHHhcCCeEEEE
Q 028256 37 LAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (211)
Q Consensus 37 ~~A~~lG~~la~~g~~lv~GGg~~GlM~a~a~gA~~~gG~viGv 80 (211)
.=.-.||+.|.++||.|..+..+ +.-+.+ .+.|-..+-+
T Consensus 13 ~P~lala~~L~~rGh~V~~~~~~-~~~~~v----~~~Gl~~~~~ 51 (139)
T PF03033_consen 13 YPFLALARALRRRGHEVRLATPP-DFRERV----EAAGLEFVPI 51 (139)
T ss_dssp HHHHHHHHHHHHTT-EEEEEETG-GGHHHH----HHTT-EEEES
T ss_pred HHHHHHHHHHhccCCeEEEeecc-cceecc----cccCceEEEe
Confidence 34568999999999999877754 544443 4455444443
No 346
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=26.02 E-value=1.7e+02 Score=24.54 Aligned_cols=35 Identities=17% Similarity=0.161 Sum_probs=18.8
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCC--eEEecCCC
Q 028256 24 FCGSSPGKSPSYQLAAIQLGKQLVERNI--DLVYGGGS 59 (211)
Q Consensus 24 fggs~~~~~~~~~~~A~~lG~~la~~g~--~lv~GGg~ 59 (211)
||||...+.+...+.++++... .+.|+ .||.||+.
T Consensus 6 ~GGs~l~~~~~~~~~~~~i~~l-~~~g~~~vvV~sg~g 42 (239)
T cd04261 6 FGGTSVASIERIKRVAERIKKR-KKKGNQVVVVVSAMG 42 (239)
T ss_pred ECCcccCCHHHHHHHHHHHHHH-HHcCCCEEEEECCCC
Confidence 7777765333444445555443 34444 46777743
No 347
>PRK13337 putative lipid kinase; Reviewed
Probab=26.02 E-value=4.4e+02 Score=22.88 Aligned_cols=32 Identities=28% Similarity=0.543 Sum_probs=22.3
Q ss_pred cCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEE
Q 028256 115 ADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLL 150 (211)
Q Consensus 115 sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill 150 (211)
.| .|+.-||=||++|+...+. ..+ ...|+.++
T Consensus 58 ~d-~vvv~GGDGTl~~vv~gl~--~~~-~~~~lgii 89 (304)
T PRK13337 58 FD-LVIAAGGDGTLNEVVNGIA--EKE-NRPKLGII 89 (304)
T ss_pred CC-EEEEEcCCCHHHHHHHHHh--hCC-CCCcEEEE
Confidence 35 6778899999999997663 111 23577777
No 348
>PF14953 DUF4504: Domain of unknown function (DUF4504)
Probab=26.00 E-value=2.8e+02 Score=24.32 Aligned_cols=58 Identities=17% Similarity=0.147 Sum_probs=39.3
Q ss_pred CCCcEEEEeCCcc-chhHHHHHHHH-----HHcCCCCcccc----cceEEcCCHHHHHHHhhhhccCc
Q 028256 143 HDKPVGLLNVDGY-YNSLLSFIDKA-----VDEGFIAPAAR----YIIVSAQTAHELICKLEVFFFFF 200 (211)
Q Consensus 143 ~~kPiill~~~g~-~~~l~~~l~~~-----~~~g~i~~~~~----~~i~~~~d~ee~~~~l~~~~~~~ 200 (211)
.-||.++++..+. +..+.++++.+ .+.+++...-. +--.+.=+++++.++++.-....
T Consensus 31 GLRpa~L~Dy~~~~~~~lq~~L~~L~~~~~q~~~~~~~~L~vl~I~~~~~lvn~~~~~~~le~~l~s~ 98 (270)
T PF14953_consen 31 GLRPAVLYDYNGAGAPQLQEYLCSLLRLAQQESGLLFQNLRVLVIDDNILLVNPKELLEHLESSLRSN 98 (270)
T ss_pred CCccEEEEEcCCCCHHHHHHHHHHhhhhhhcccchhccceEEEEEcCcEEEEeHHHHHHHHHHHhcCC
Confidence 3499999999988 99999999888 55565533311 11234456888888887744433
No 349
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=25.85 E-value=5.5e+02 Score=24.56 Aligned_cols=20 Identities=15% Similarity=0.175 Sum_probs=16.0
Q ss_pred HHHHHHHHhcCCeEEEEecC
Q 028256 64 GLVSQAVYDGGRHVLGVIPK 83 (211)
Q Consensus 64 ~a~a~gA~~~gG~viGv~P~ 83 (211)
+|+-+.|+.+|++|+-++-.
T Consensus 87 eAAk~AAlgAGA~V~~~~a~ 106 (463)
T TIGR01319 87 EAAKRAAHGAGAKIANVYAY 106 (463)
T ss_pred HHHHHHHhcCCcEEEEEEee
Confidence 67778888899999997643
No 350
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=25.84 E-value=3.2e+02 Score=25.63 Aligned_cols=105 Identities=19% Similarity=0.218 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHc---------CCeEEecCCCCC---hhHHHHHHHHhcCCeEEEEecCcCCCCCCCCCCCceeeecCCH
Q 028256 37 LAAIQLGKQLVER---------NIDLVYGGGSIG---LMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGM 104 (211)
Q Consensus 37 ~~A~~lG~~la~~---------g~~lv~GGg~~G---lM~a~a~gA~~~gG~viGv~P~~~~~~e~~~~~~~~~~~~~~~ 104 (211)
+.|...++.+|++ +..++||+-..| |+.|++..+...|.+++-+....+.. .+.+.+....+
T Consensus 120 ~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~------~~~~~l~~~~~ 193 (445)
T PRK12422 120 DLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTE------HLVSAIRSGEM 193 (445)
T ss_pred HHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHH------HHHHHHhcchH
Confidence 3455666666641 235688763333 58888888887777776653322110 00000111112
Q ss_pred HHHHHHHHHhcCEEEE-----ecCCcCcHHHHHHHHHHHHhCCCCCcEEEE
Q 028256 105 HQRKAEMARQADAFIA-----LPGGYGTLEELLEVITWAQLGIHDKPVGLL 150 (211)
Q Consensus 105 ~~Rk~~m~~~sDa~Iv-----lpGG~GTL~El~~~~~~~~lg~~~kPiill 150 (211)
++-+...+..|++++ +.|.-.|.+|+|..+..... .++++++.
T Consensus 194 -~~f~~~~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~--~~k~IIlt 241 (445)
T PRK12422 194 -QRFRQFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHT--EGKLIVIS 241 (445)
T ss_pred -HHHHHHcccCCEEEEcchhhhcCChhhHHHHHHHHHHHHH--CCCcEEEe
Confidence 122223456676554 34555688888877653322 35777765
No 351
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=25.83 E-value=62 Score=26.97 Aligned_cols=25 Identities=20% Similarity=0.506 Sum_probs=17.9
Q ss_pred CCCcEEEEeCCccchhHHHHHHHHHH
Q 028256 143 HDKPVGLLNVDGYYNSLLSFIDKAVD 168 (211)
Q Consensus 143 ~~kPiill~~~g~~~~l~~~l~~~~~ 168 (211)
..+|+|==|. |||..|+.+=.++.+
T Consensus 133 a~RpiIRPN~-GFw~QLi~YE~qL~g 157 (198)
T KOG1718|consen 133 ARRPIIRPNV-GFWRQLIDYEQQLFG 157 (198)
T ss_pred hhCceeCCCc-cHHHHHHHHHHHhcC
Confidence 3578876555 799999997555543
No 352
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.77 E-value=3.2e+02 Score=24.13 Aligned_cols=30 Identities=20% Similarity=0.345 Sum_probs=22.6
Q ss_pred cCCeEEecCCCCChhHHHHHHHHhcCCeEEEE
Q 028256 49 RNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (211)
Q Consensus 49 ~g~~lv~GGg~~GlM~a~a~gA~~~gG~viGv 80 (211)
..+.++.|| . |.|=-+++-+...+-.++||
T Consensus 65 ~dlvi~lGG-D-GT~L~aa~~~~~~~~PilGI 94 (292)
T PRK01911 65 ADMVISIGG-D-GTFLRTATYVGNSNIPILGI 94 (292)
T ss_pred CCEEEEECC-c-HHHHHHHHHhcCCCCCEEEE
Confidence 466777776 5 98877777776777788888
No 353
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=25.55 E-value=1.5e+02 Score=24.33 Aligned_cols=28 Identities=7% Similarity=-0.108 Sum_probs=14.5
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 028256 20 RVCVFCGSSPGKSPSYQLAAIQLGKQLVER 49 (211)
Q Consensus 20 ~I~Vfggs~~~~~~~~~~~A~~lG~~la~~ 49 (211)
+|+|... . ..++-+.+..+.+-+.+.+.
T Consensus 1 ~Ig~i~~-~-~~~~~~~~~~~~i~~~~~~~ 28 (272)
T cd06300 1 KIGLSNS-Y-AGNTWRAQMLDEFKAQAKEL 28 (272)
T ss_pred CeEEecc-c-cCChHHHHHHHHHHHHHHhh
Confidence 3555542 2 23455555555555656556
No 354
>PRK08264 short chain dehydrogenase; Validated
Probab=25.48 E-value=3.6e+02 Score=21.69 Aligned_cols=10 Identities=10% Similarity=0.119 Sum_probs=8.2
Q ss_pred cCEEEEecCC
Q 028256 115 ADAFIALPGG 124 (211)
Q Consensus 115 sDa~IvlpGG 124 (211)
.|++|-..|.
T Consensus 74 id~vi~~ag~ 83 (238)
T PRK08264 74 VTILVNNAGI 83 (238)
T ss_pred CCEEEECCCc
Confidence 5888888877
No 355
>PRK07102 short chain dehydrogenase; Provisional
Probab=25.47 E-value=97 Score=25.35 Aligned_cols=32 Identities=13% Similarity=0.206 Sum_probs=20.7
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEecC
Q 028256 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGG 57 (211)
Q Consensus 18 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GG 57 (211)
|++|.|.|+++. ....+++.|+++|+.|+.-+
T Consensus 1 ~~~vlItGas~g--------iG~~~a~~l~~~G~~Vi~~~ 32 (243)
T PRK07102 1 MKKILIIGATSD--------IARACARRYAAAGARLYLAA 32 (243)
T ss_pred CcEEEEEcCCcH--------HHHHHHHHHHhcCCEEEEEe
Confidence 456778866542 24567777788888865443
No 356
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=25.40 E-value=2.6e+02 Score=24.15 Aligned_cols=10 Identities=10% Similarity=0.009 Sum_probs=5.1
Q ss_pred cCEEEEecCC
Q 028256 115 ADAFIALPGG 124 (211)
Q Consensus 115 sDa~IvlpGG 124 (211)
.|++|||++|
T Consensus 45 ~d~ivVLGa~ 54 (239)
T PRK10834 45 RQVGVVLGTA 54 (239)
T ss_pred CCEEEEcCCc
Confidence 4555555544
No 357
>PRK05920 aromatic acid decarboxylase; Validated
Probab=25.39 E-value=3.5e+02 Score=22.68 Aligned_cols=79 Identities=22% Similarity=0.232 Sum_probs=46.6
Q ss_pred hcCEEEEecCCcCcHHHHHHHHHH--------HHhCCCCCcEEEEeCCccchh-H-HHHHHHHHHcCCC-CcccccceEE
Q 028256 114 QADAFIALPGGYGTLEELLEVITW--------AQLGIHDKPVGLLNVDGYYNS-L-LSFIDKAVDEGFI-APAARYIIVS 182 (211)
Q Consensus 114 ~sDa~IvlpGG~GTL~El~~~~~~--------~~lg~~~kPiill~~~g~~~~-l-~~~l~~~~~~g~i-~~~~~~~i~~ 182 (211)
.+|++||.|-..+|+.-+..-++- ..++ .++|+++.=.+ .|.. . .+-++.+.+.|.. =+.....+.-
T Consensus 93 ~aD~~vVaPaTantlakiA~GiaD~ll~~~a~~~L~-~~~pvvi~P~~-m~~~~~~~~nl~~L~~~G~~ii~P~~g~y~~ 170 (204)
T PRK05920 93 RTDGMVIAPCSMGTLAAIAHGLSDNLIERAADVVLK-ERRKLILVPRE-TPLSLIHLENMLKLAEAGAIILPAIPAFYHK 170 (204)
T ss_pred ccCEEEEeeCCHhHHHHHHccccCcHHHHHHHHHHh-cCCCEEEEeCC-CCCCHHHHHHHHHHHHCCCEEeCCcccccCC
Confidence 689999999999998776532211 1122 57899988554 4443 2 2224556665552 1222233444
Q ss_pred cCCHHHHHHHhh
Q 028256 183 AQTAHELICKLE 194 (211)
Q Consensus 183 ~~d~ee~~~~l~ 194 (211)
-++.+|.++++-
T Consensus 171 p~~~~~~~~f~~ 182 (204)
T PRK05920 171 PQTIDDLVDFVV 182 (204)
T ss_pred CCCHHHHHHHHH
Confidence 556788888775
No 358
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=25.37 E-value=3.9e+02 Score=22.44 Aligned_cols=56 Identities=16% Similarity=0.096 Sum_probs=34.6
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeE--EecCCCCChhHHHHHHHHhcC---CeEEEE
Q 028256 17 RFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDL--VYGGGSIGLMGLVSQAVYDGG---RHVLGV 80 (211)
Q Consensus 17 ~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~l--v~GGg~~GlM~a~a~gA~~~g---G~viGv 80 (211)
..+.|.|+=+. +. +.|.++++.|.+.|+++ ||==.+ +-.++..+-..+.+ +..||.
T Consensus 12 ~~~vi~vir~~----~~---~~a~~~~~al~~~Gi~~iEit~~~~-~a~~~i~~l~~~~~~~p~~~vGa 72 (213)
T PRK06552 12 ANGVVAVVRGE----SK---EEALKISLAVIKGGIKAIEVTYTNP-FASEVIKELVELYKDDPEVLIGA 72 (213)
T ss_pred HCCEEEEEECC----CH---HHHHHHHHHHHHCCCCEEEEECCCc-cHHHHHHHHHHHcCCCCCeEEee
Confidence 35678888322 22 55788888888888876 233334 66666666555553 356775
No 359
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=25.35 E-value=1.1e+02 Score=25.08 Aligned_cols=32 Identities=22% Similarity=0.135 Sum_probs=20.6
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEecC
Q 028256 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGG 57 (211)
Q Consensus 18 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GG 57 (211)
.++|-|.|+++. ....+++.|+++|+.|+.-+
T Consensus 5 ~k~vlItGas~g--------IG~~ia~~l~~~G~~vi~~~ 36 (248)
T TIGR01832 5 GKVALVTGANTG--------LGQGIAVGLAEAGADIVGAG 36 (248)
T ss_pred CCEEEEECCCch--------HHHHHHHHHHHCCCEEEEEc
Confidence 356777765432 24567777888888876544
No 360
>PRK06180 short chain dehydrogenase; Provisional
Probab=25.25 E-value=1e+02 Score=26.01 Aligned_cols=32 Identities=16% Similarity=-0.049 Sum_probs=22.6
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEecC
Q 028256 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGG 57 (211)
Q Consensus 18 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GG 57 (211)
+++|.|.|+++- ..+.+.+.|+++|+.|+..+
T Consensus 4 ~~~vlVtGasgg--------iG~~la~~l~~~G~~V~~~~ 35 (277)
T PRK06180 4 MKTWLITGVSSG--------FGRALAQAALAAGHRVVGTV 35 (277)
T ss_pred CCEEEEecCCCh--------HHHHHHHHHHhCcCEEEEEe
Confidence 456888876552 34677888888999977654
No 361
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=25.25 E-value=1.9e+02 Score=27.99 Aligned_cols=65 Identities=25% Similarity=0.388 Sum_probs=39.4
Q ss_pred hHHHHHHHhhhhcCcceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEecCCCCChhHHHHHHHHhcCCeEEEE
Q 028256 4 QQQQQQAAAALKSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (211)
Q Consensus 4 ~~~~~~~~~~~~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~a~gA~~~gG~viGv 80 (211)
|.++.......+.+++.+|||||++.+ + ++++ -++|..||-|. |.=+++-.-.+.........-|
T Consensus 180 QV~~~~~~~~~~~~~~~~cvyGG~~~~--~----Q~~~-----l~~gvdiviaT-PGRl~d~le~g~~~l~~v~ylV 244 (519)
T KOG0331|consen 180 QVQAEAREFGKSLRLRSTCVYGGAPKG--P----QLRD-----LERGVDVVIAT-PGRLIDLLEEGSLNLSRVTYLV 244 (519)
T ss_pred HHHHHHHHHcCCCCccEEEEeCCCCcc--H----HHHH-----HhcCCcEEEeC-ChHHHHHHHcCCccccceeEEE
Confidence 445555555555566788888887764 2 1222 25678777776 5345777777766665554444
No 362
>PRK06182 short chain dehydrogenase; Validated
Probab=25.22 E-value=3.4e+02 Score=22.55 Aligned_cols=11 Identities=18% Similarity=0.311 Sum_probs=8.1
Q ss_pred hcCEEEEecCC
Q 028256 114 QADAFIALPGG 124 (211)
Q Consensus 114 ~sDa~IvlpGG 124 (211)
..|++|-..|.
T Consensus 74 ~id~li~~ag~ 84 (273)
T PRK06182 74 RIDVLVNNAGY 84 (273)
T ss_pred CCCEEEECCCc
Confidence 46888888764
No 363
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=25.18 E-value=3.1e+02 Score=26.21 Aligned_cols=86 Identities=16% Similarity=0.179 Sum_probs=47.4
Q ss_pred EEecCCCCChhHHHHHHHHhcCCeEEEEecCcCCCCCCCCCCCceeeecCCHHHHHHHHHHhcCEEEEecCCcCcHH-HH
Q 028256 53 LVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLE-EL 131 (211)
Q Consensus 53 lv~GGg~~GlM~a~a~gA~~~gG~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~Rk~~m~~~sDa~IvlpGG~GTL~-El 131 (211)
+|.|.|. +=..+++-++..|.+|+.+-++.....+.....+ ...++. -+++.||.||..+|..+.++ |.
T Consensus 258 gVIG~G~--IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~----~~~~le----ell~~ADIVI~atGt~~iI~~e~ 327 (476)
T PTZ00075 258 VVCGYGD--VGKGCAQALRGFGARVVVTEIDPICALQAAMEGY----QVVTLE----DVVETADIFVTATGNKDIITLEH 327 (476)
T ss_pred EEECCCH--HHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCc----eeccHH----HHHhcCCEEEECCCcccccCHHH
Confidence 3667765 3345677777788888776222111100001111 112333 24678999999988777665 44
Q ss_pred HHHHHHHHhCCCCCcEEEEeCCccc
Q 028256 132 LEVITWAQLGIHDKPVGLLNVDGYY 156 (211)
Q Consensus 132 ~~~~~~~~lg~~~kPiill~~~g~~ 156 (211)
+.. .+.-.+|.|...+.
T Consensus 328 ~~~--------MKpGAiLINvGr~d 344 (476)
T PTZ00075 328 MRR--------MKNNAIVGNIGHFD 344 (476)
T ss_pred Hhc--------cCCCcEEEEcCCCc
Confidence 433 23446778886553
No 364
>KOG0503 consensus Asparaginase [Amino acid transport and metabolism]
Probab=25.17 E-value=1.1e+02 Score=28.13 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=27.6
Q ss_pred HhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeC
Q 028256 113 RQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 152 (211)
Q Consensus 113 ~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~ 152 (211)
+..|++||+.| .-||+|....++++-- . .|||++.+.
T Consensus 120 ~~~~G~VV~HG-TDTLe~tAffls~~~~-t-~KPIVitGa 156 (368)
T KOG0503|consen 120 KSYDGIVVTHG-TDTLEETAFFLSFTIN-T-LKPIVITGA 156 (368)
T ss_pred cccCcEEEEcC-cchHHHHHHHHHHHHh-c-CCcEEEecc
Confidence 34789999885 6999999888875432 2 299998754
No 365
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=25.16 E-value=3.6e+02 Score=25.83 Aligned_cols=81 Identities=19% Similarity=0.175 Sum_probs=43.4
Q ss_pred HHHHHHHHHHcC-CeEEecCCCC--ChhHHHHHHHHhcCCeEE------EEecCcCCCCCCCCCCCceeeecCCHHHHHH
Q 028256 39 AIQLGKQLVERN-IDLVYGGGSI--GLMGLVSQAVYDGGRHVL------GVIPKTLMPREITGDTVGEVKAVSGMHQRKA 109 (211)
Q Consensus 39 A~~lG~~la~~g-~~lv~GGg~~--GlM~a~a~gA~~~gG~vi------Gv~P~~~~~~e~~~~~~~~~~~~~~~~~Rk~ 109 (211)
..++.+.|.+.. -.|+.|+|-. |..+++.+=|-..|-.++ |++|+. |+.+.-.+-...-...+.
T Consensus 196 i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~~~~-------hp~~~G~~G~~~~~~~~~ 268 (572)
T PRK08979 196 IKRGLQALLAAKKPVLYVGGGAIISGADKQILQLAEKLNLPVVSTLMGLGAFPGT-------HKNSLGMLGMHGRYEANM 268 (572)
T ss_pred HHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHhCCCEEEcccccccCCCC-------CcccccCCccCCCHHHHH
Confidence 445566666654 5556666543 677777777777777766 333321 221111110011122333
Q ss_pred HHHHhcCEEEEecCCcCc
Q 028256 110 EMARQADAFIALPGGYGT 127 (211)
Q Consensus 110 ~m~~~sDa~IvlpGG~GT 127 (211)
.++.||.+|+++-.++.
T Consensus 269 -~~~~aD~vl~vG~~~~~ 285 (572)
T PRK08979 269 -AMHNADLIFGIGVRFDD 285 (572)
T ss_pred -HHHhCCEEEEEcCCCCc
Confidence 55789999998866443
No 366
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=25.16 E-value=1.7e+02 Score=27.49 Aligned_cols=86 Identities=22% Similarity=0.263 Sum_probs=44.1
Q ss_pred eEEecCCCCChhHHHHHHHHhcCCeEEEEecCcCCCCCCCCCCCceeeecCCHHHHHHHHHHhcCEEEEecCCcCcHH-H
Q 028256 52 DLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLE-E 130 (211)
Q Consensus 52 ~lv~GGg~~GlM~a~a~gA~~~gG~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~Rk~~m~~~sDa~IvlpGG~GTL~-E 130 (211)
.+|.|.|+.| ..+++.++..|.+|+.+-.+.....+.....+ + +.++. -.++.+|.+|...|-.++++ +
T Consensus 215 VlViG~G~IG--~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~-~---v~~l~----eal~~aDVVI~aTG~~~vI~~~ 284 (425)
T PRK05476 215 VVVAGYGDVG--KGCAQRLRGLGARVIVTEVDPICALQAAMDGF-R---VMTME----EAAELGDIFVTATGNKDVITAE 284 (425)
T ss_pred EEEECCCHHH--HHHHHHHHhCCCEEEEEcCCchhhHHHHhcCC-E---ecCHH----HHHhCCCEEEECCCCHHHHHHH
Confidence 4577776544 34666677778887776322111111001111 1 12332 23468999998887666555 3
Q ss_pred HHHHHHHHHhCCCCCcEEEEeCCcc
Q 028256 131 LLEVITWAQLGIHDKPVGLLNVDGY 155 (211)
Q Consensus 131 l~~~~~~~~lg~~~kPiill~~~g~ 155 (211)
.+.. .++-.+++|.+.+
T Consensus 285 ~~~~--------mK~GailiNvG~~ 301 (425)
T PRK05476 285 HMEA--------MKDGAILANIGHF 301 (425)
T ss_pred HHhc--------CCCCCEEEEcCCC
Confidence 3332 2344566777533
No 367
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=25.16 E-value=2.2e+02 Score=25.33 Aligned_cols=65 Identities=15% Similarity=0.159 Sum_probs=39.3
Q ss_pred HHHHhcCEEEEe---cCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCCCcccccceEEcCCH
Q 028256 110 EMARQADAFIAL---PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTA 186 (211)
Q Consensus 110 ~m~~~sDa~Ivl---pGG~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ 186 (211)
..+..||++|+- ..|++ .=+.|+++ .++|||..+.. . ..+ .. ....-+.+.+|+
T Consensus 293 ~~~~~adv~v~Ps~~~eG~~--~~~lEAma------~G~PVV~t~~~-~-~~i------------~~-~~~~g~lv~~~~ 349 (397)
T TIGR03087 293 PYLAHAAVAVAPLRIARGIQ--NKVLEAMA------MAKPVVASPEA-A-EGI------------DA-LPGAELLVAADP 349 (397)
T ss_pred HHHHhCCEEEecccccCCcc--cHHHHHHH------cCCCEEecCcc-c-ccc------------cc-cCCcceEeCCCH
Confidence 356889988752 23444 35777787 79999986532 1 111 11 111224445899
Q ss_pred HHHHHHhhhhc
Q 028256 187 HELICKLEVFF 197 (211)
Q Consensus 187 ee~~~~l~~~~ 197 (211)
+++.+.|.+..
T Consensus 350 ~~la~ai~~ll 360 (397)
T TIGR03087 350 ADFAAAILALL 360 (397)
T ss_pred HHHHHHHHHHH
Confidence 99988887754
No 368
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=25.12 E-value=2.1e+02 Score=26.65 Aligned_cols=88 Identities=19% Similarity=0.189 Sum_probs=46.5
Q ss_pred CCe-EEecCCCCChhHHHHHHHHhcCCeEEEEecCcCCCCCCCCCCCceeeecCCHHHHHHHHHHhcCEEEEecCCcCcH
Q 028256 50 NID-LVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTL 128 (211)
Q Consensus 50 g~~-lv~GGg~~GlM~a~a~gA~~~gG~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~Rk~~m~~~sDa~IvlpGG~GTL 128 (211)
|-+ +|.|.|+.|.. +++.++..|.+|+.+-.+.....+.....+ ...++. . .+..+|.+|...|..+.+
T Consensus 195 Gk~VvViG~G~IG~~--vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~----~v~~le---e-al~~aDVVItaTG~~~vI 264 (406)
T TIGR00936 195 GKTVVVAGYGWCGKG--IAMRARGMGARVIVTEVDPIRALEAAMDGF----RVMTME---E-AAKIGDIFITATGNKDVI 264 (406)
T ss_pred cCEEEEECCCHHHHH--HHHHHhhCcCEEEEEeCChhhHHHHHhcCC----EeCCHH---H-HHhcCCEEEECCCCHHHH
Confidence 444 47787765543 555667778888887322211111011111 112332 2 357899999998887777
Q ss_pred HH-HHHHHHHHHhCCCCCcEEEEeCCcc
Q 028256 129 EE-LLEVITWAQLGIHDKPVGLLNVDGY 155 (211)
Q Consensus 129 ~E-l~~~~~~~~lg~~~kPiill~~~g~ 155 (211)
++ .+.. .+.-.++.|.+.+
T Consensus 265 ~~~~~~~--------mK~GailiN~G~~ 284 (406)
T TIGR00936 265 RGEHFEN--------MKDGAIVANIGHF 284 (406)
T ss_pred HHHHHhc--------CCCCcEEEEECCC
Confidence 64 4332 2333466666433
No 369
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=25.12 E-value=81 Score=28.32 Aligned_cols=42 Identities=12% Similarity=0.173 Sum_probs=29.8
Q ss_pred HHHHHHHhhhhcCcceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEE
Q 028256 5 QQQQQAAAALKSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV 54 (211)
Q Consensus 5 ~~~~~~~~~~~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv 54 (211)
+....+...+.+..++|.|.|++.. ....|.+.|.++||.|+
T Consensus 8 ~~~~~~~~~~~~~~~~IlVtGgtGf--------IG~~l~~~L~~~G~~V~ 49 (370)
T PLN02695 8 LAELEREPYWPSEKLRICITGAGGF--------IASHIARRLKAEGHYII 49 (370)
T ss_pred hhhcCCCCCCCCCCCEEEEECCccH--------HHHHHHHHHHhCCCEEE
Confidence 3344455666777789999987653 24678888888898775
No 370
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=25.02 E-value=83 Score=27.58 Aligned_cols=31 Identities=23% Similarity=0.164 Sum_probs=21.2
Q ss_pred CCeEEecCCCCChhHHHHHHHHhcCCeEEEEec
Q 028256 50 NIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIP 82 (211)
Q Consensus 50 g~~lv~GGg~~GlM~a~a~gA~~~gG~viGv~P 82 (211)
...+|+|+|..|+ ++..-|+..|.+++.+..
T Consensus 167 ~~VlV~G~g~iG~--~a~~~a~~~G~~vi~~~~ 197 (329)
T TIGR02822 167 GRLGLYGFGGSAH--LTAQVALAQGATVHVMTR 197 (329)
T ss_pred CEEEEEcCCHHHH--HHHHHHHHCCCeEEEEeC
Confidence 3567888765454 456678888888887754
No 371
>PRK06194 hypothetical protein; Provisional
Probab=24.95 E-value=3.8e+02 Score=22.40 Aligned_cols=31 Identities=13% Similarity=0.125 Sum_probs=21.5
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEecC
Q 028256 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGG 57 (211)
Q Consensus 19 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GG 57 (211)
++|-|.|+++- ...++++.|+++|+.|+.-+
T Consensus 7 k~vlVtGasgg--------IG~~la~~l~~~G~~V~~~~ 37 (287)
T PRK06194 7 KVAVITGAASG--------FGLAFARIGAALGMKLVLAD 37 (287)
T ss_pred CEEEEeCCccH--------HHHHHHHHHHHCCCEEEEEe
Confidence 56778876552 24567788888999876544
No 372
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=24.65 E-value=2.2e+02 Score=26.18 Aligned_cols=13 Identities=38% Similarity=0.583 Sum_probs=10.9
Q ss_pred HhcCEEEEecCCc
Q 028256 113 RQADAFIALPGGY 125 (211)
Q Consensus 113 ~~sDa~IvlpGG~ 125 (211)
..+|++|.++||+
T Consensus 105 ~~~D~IiavGGGS 117 (395)
T PRK15454 105 SGCDGVIAFGGGS 117 (395)
T ss_pred cCcCEEEEeCChH
Confidence 4689999999984
No 373
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=24.57 E-value=1.9e+02 Score=25.19 Aligned_cols=39 Identities=23% Similarity=0.348 Sum_probs=26.3
Q ss_pred HHHHHHhcCEEEEec--CCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCc
Q 028256 108 KAEMARQADAFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDG 154 (211)
Q Consensus 108 k~~m~~~sDa~Ivlp--GG~GTL~El~~~~~~~~lg~~~kPiill~~~g 154 (211)
...+...||++|.-. -|+|.. +.|+++ .++||+..+.+|
T Consensus 274 ~~~~~~~aDv~v~ps~~e~~g~~--~lEA~a------~G~PvI~s~~~~ 314 (388)
T TIGR02149 274 LVELLSNAEVFVCPSIYEPLGIV--NLEAMA------CGTPVVASATGG 314 (388)
T ss_pred HHHHHHhCCEEEeCCccCCCChH--HHHHHH------cCCCEEEeCCCC
Confidence 344568899877542 345543 467777 799999987754
No 374
>PRK08177 short chain dehydrogenase; Provisional
Probab=24.50 E-value=1.3e+02 Score=24.35 Aligned_cols=32 Identities=16% Similarity=0.142 Sum_probs=21.0
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEecC
Q 028256 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGG 57 (211)
Q Consensus 18 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GG 57 (211)
|++|.|.|+++. ....+++.|+++|+.|+.-+
T Consensus 1 ~k~vlItG~sg~--------iG~~la~~l~~~G~~V~~~~ 32 (225)
T PRK08177 1 KRTALIIGASRG--------LGLGLVDRLLERGWQVTATV 32 (225)
T ss_pred CCEEEEeCCCch--------HHHHHHHHHHhCCCEEEEEe
Confidence 356777766542 24567778888888876443
No 375
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=24.42 E-value=5.6e+02 Score=23.56 Aligned_cols=116 Identities=16% Similarity=0.130 Sum_probs=61.5
Q ss_pred EecCCCCChhHHHHHHHHhcCCeEEEEecCcCCCCCCCCCCCceeee---cCCHHHHHHHHHH--hcCEEE-EecCCcCc
Q 028256 54 VYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKA---VSGMHQRKAEMAR--QADAFI-ALPGGYGT 127 (211)
Q Consensus 54 v~GGg~~GlM~a~a~gA~~~gG~viGv~P~~~~~~e~~~~~~~~~~~---~~~~~~Rk~~m~~--~sDa~I-vlpGG~GT 127 (211)
+-+.|- |+.-+..+....+||. | .|+++ +-- .+.+..=-+.+.+ ..|+++ .++||+.-
T Consensus 261 ~i~nGa-Gl~m~t~D~i~~~gg~-----p---------aNPlD-lgg~a~~e~~~~aL~~ll~Dp~VdaVlv~i~ggi~~ 324 (392)
T PRK14046 261 CIVNGA-GLAMATMDMIKLAGGE-----P---------ANFLD-VGGGASPERVAKAFRLVLSDRNVKAILVNIFAGINR 324 (392)
T ss_pred EEeCCc-cHHHHHHHHHHhcCCC-----C---------cCCEE-ecCCCCHHHHHHHHHHHHcCCCCCEEEEEcCCCCCC
Confidence 334443 8888888888888875 2 12221 100 0111111122222 246655 44677766
Q ss_pred HHHHHHHHHHHHhC-CCCCcEEEEeCCc-cchhHHHHHHHHHHcCCCCcccccceEEcCCHHHHHHHhhhh
Q 028256 128 LEELLEVITWAQLG-IHDKPVGLLNVDG-YYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKLEVF 196 (211)
Q Consensus 128 L~El~~~~~~~~lg-~~~kPiill~~~g-~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee~~~~l~~~ 196 (211)
.+++.+.+.-..-. ..+||+++ ...| -.+.... .+.+.|. .++..+|.+|+++...+.
T Consensus 325 ~~~vA~~Ii~a~~~~~~~kPvvv-~l~G~~~e~~~~---iL~~~Gi-------pvf~~~~~~~a~~~~v~~ 384 (392)
T PRK14046 325 CDWVAEGVVQAAREVGIDVPLVV-RLAGTNVEEGRK---ILAESGL-------PIITADTLAEAAEKAVEA 384 (392)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEE-EcCCCCHHHHHH---HHHHcCC-------CeeecCCHHHHHHHHHHH
Confidence 68887776543322 25789954 3333 2222222 2333343 278899999999988754
No 376
>PLN02740 Alcohol dehydrogenase-like
Probab=24.33 E-value=1.4e+02 Score=26.62 Aligned_cols=83 Identities=20% Similarity=0.248 Sum_probs=39.6
Q ss_pred CCeEEecCCCCChhHHHHHHHHhcCC-eEEEEecCcCCCCCCCC-CCCceeeecC----CHHHHHHHHHH-hcCEEEEec
Q 028256 50 NIDLVYGGGSIGLMGLVSQAVYDGGR-HVLGVIPKTLMPREITG-DTVGEVKAVS----GMHQRKAEMAR-QADAFIALP 122 (211)
Q Consensus 50 g~~lv~GGg~~GlM~a~a~gA~~~gG-~viGv~P~~~~~~e~~~-~~~~~~~~~~----~~~~Rk~~m~~-~sDa~Ivlp 122 (211)
...+|+|+|+.|++ +..-|+..|. .|+++..... ..+... -..+.++... ++.++-..+.. ..|++|=..
T Consensus 200 ~~VlV~G~G~vG~~--a~q~ak~~G~~~Vi~~~~~~~-r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~~ 276 (381)
T PLN02740 200 SSVAIFGLGAVGLA--VAEGARARGASKIIGVDINPE-KFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSFECA 276 (381)
T ss_pred CEEEEECCCHHHHH--HHHHHHHCCCCcEEEEcCChH-HHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECC
Confidence 35678887654444 4556777787 5888743211 011100 0112222211 13322222221 357777777
Q ss_pred CCcCcHHHHHHHH
Q 028256 123 GGYGTLEELLEVI 135 (211)
Q Consensus 123 GG~GTL~El~~~~ 135 (211)
|+..++.+.+...
T Consensus 277 G~~~~~~~a~~~~ 289 (381)
T PLN02740 277 GNVEVLREAFLST 289 (381)
T ss_pred CChHHHHHHHHhh
Confidence 7666666665543
No 377
>PRK08105 flavodoxin; Provisional
Probab=24.30 E-value=1.7e+02 Score=22.87 Aligned_cols=41 Identities=20% Similarity=0.158 Sum_probs=21.4
Q ss_pred HHHHHHHHHHc-----C-CeEEecCCC------CChhHHHHHHHHhcCCeEEE
Q 028256 39 AIQLGKQLVER-----N-IDLVYGGGS------IGLMGLVSQAVYDGGRHVLG 79 (211)
Q Consensus 39 A~~lG~~la~~-----g-~~lv~GGg~------~GlM~a~a~gA~~~gG~viG 79 (211)
+.++-+.|.+. | .--|+|-|. .+.+..+.+-..+.|+..++
T Consensus 68 ~~~f~~~l~~~~~~l~~~~~avfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~ 120 (149)
T PRK08105 68 IVPLFQALKDTAGYQPNLRYGVIALGDSSYDNFCGAGKQFDALLQEQGAKRVG 120 (149)
T ss_pred HHHHHHHHHhcCcccCCCEEEEEeeecCCHHHHHHHHHHHHHHHHHCCCeEee
Confidence 45555555442 2 123667665 23344444444557877776
No 378
>PRK00170 azoreductase; Reviewed
Probab=24.17 E-value=2e+02 Score=23.01 Aligned_cols=36 Identities=14% Similarity=0.055 Sum_probs=19.4
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHHHHHHHHc--CCeE
Q 028256 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVER--NIDL 53 (211)
Q Consensus 18 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~--g~~l 53 (211)
|++|.|+.||-..+.+.-.+.++.+.+.+.++ |+.+
T Consensus 1 Mmkil~i~gSpr~~~s~s~~l~~~~~~~l~~~~~~~~v 38 (201)
T PRK00170 1 MSKVLVIKSSILGDYSQSMQLGDAFIEAYKEAHPDDEV 38 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHHHhCCCCeE
Confidence 35666665555443243345666666666665 5543
No 379
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=24.12 E-value=1.9e+02 Score=25.72 Aligned_cols=55 Identities=20% Similarity=0.238 Sum_probs=35.5
Q ss_pred EEEeCCCCCC--CHHHHHHHHHHHHHHHHcCCe-EEecCCCCChhHHHHHHHHhcCCeEEEE
Q 028256 22 CVFCGSSPGK--SPSYQLAAIQLGKQLVERNID-LVYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (211)
Q Consensus 22 ~Vfggs~~~~--~~~~~~~A~~lG~~la~~g~~-lv~GGg~~GlM~a~a~gA~~~gG~viGv 80 (211)
++.++||... +++. -+++.+.|-++++. |++=||. |-|..+.+=+.+.+-.+|||
T Consensus 64 t~LgtsR~~~~~~~~~---~~~~~~~l~~~~Id~Li~IGGd-gs~~~a~~L~e~~~i~vigi 121 (301)
T TIGR02482 64 TILGTARCPEFKTEEG---RQKAVENLKKLGIEGLVVIGGD-GSYTGAQKLYEEGGIPVIGL 121 (301)
T ss_pred ceeccCCCCccCCHHH---HHHHHHHHHHcCCCEEEEeCCc-hHHHHHHHHHHhhCCCEEee
Confidence 4566665432 2222 34567777777664 3444556 99999888776678899997
No 380
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=24.11 E-value=25 Score=31.26 Aligned_cols=10 Identities=50% Similarity=0.826 Sum_probs=8.7
Q ss_pred EEecCCcCcH
Q 028256 119 IALPGGYGTL 128 (211)
Q Consensus 119 IvlpGG~GTL 128 (211)
|+|-||.||-
T Consensus 4 iILAgG~GTR 13 (286)
T COG1209 4 VILAGGSGTR 13 (286)
T ss_pred EEecCcCccc
Confidence 7899999993
No 381
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=24.06 E-value=2.1e+02 Score=24.85 Aligned_cols=42 Identities=26% Similarity=0.514 Sum_probs=25.9
Q ss_pred cHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHH-----HHHHHHHcCC
Q 028256 127 TLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLS-----FIDKAVDEGF 171 (211)
Q Consensus 127 TL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~-----~l~~~~~~g~ 171 (211)
|++++++.+.-..-...+.|++++. ||+++.. |++.+.+.|.
T Consensus 72 ~~~~~~~~~~~~r~~~~~~p~vlm~---Y~N~i~~~G~e~f~~~~~~aGv 118 (258)
T PRK13111 72 TLADVFELVREIREKDPTIPIVLMT---YYNPIFQYGVERFAADAAEAGV 118 (258)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEe---cccHHhhcCHHHHHHHHHHcCC
Confidence 4666776655333223567988774 7876554 6677776554
No 382
>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet
Probab=24.03 E-value=96 Score=26.33 Aligned_cols=28 Identities=14% Similarity=0.156 Sum_probs=17.1
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 028256 23 VFCGSSPGKSPSYQLAAIQLGKQLVERNI 51 (211)
Q Consensus 23 Vfggs~~~~~~~~~~~A~~lG~~la~~g~ 51 (211)
=||||...+.+.+.+.++++.+... .|+
T Consensus 5 K~GGs~l~~~~~~~~~~~~I~~~~~-~g~ 32 (244)
T cd04260 5 KFGGTSVSTKERREQVAKKVKQAVD-EGY 32 (244)
T ss_pred EECchhcCCHHHHHHHHHHHHHHHH-CCC
Confidence 3788887655556566666665544 443
No 383
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=24.03 E-value=3.5e+02 Score=21.13 Aligned_cols=106 Identities=16% Similarity=0.150 Sum_probs=53.6
Q ss_pred hcCcceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEecCCCCChhHHHHHHHHhcCCeEEEEecCcCCCCCCCCCC
Q 028256 15 KSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDT 94 (211)
Q Consensus 15 ~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~a~gA~~~gG~viGv~P~~~~~~e~~~~~ 94 (211)
.-+-++|+|+|-|. ...+.|+..|.++|.++..--...- .+.+.+.++.-.+..+.-..+.+.++-.+.
T Consensus 25 ~~~gk~v~VvGrs~--------~vG~pla~lL~~~gatV~~~~~~t~---~l~~~v~~ADIVvsAtg~~~~i~~~~ikpG 93 (140)
T cd05212 25 RLDGKKVLVVGRSG--------IVGAPLQCLLQRDGATVYSCDWKTI---QLQSKVHDADVVVVGSPKPEKVPTEWIKPG 93 (140)
T ss_pred CCCCCEEEEECCCc--------hHHHHHHHHHHHCCCEEEEeCCCCc---CHHHHHhhCCEEEEecCCCCccCHHHcCCC
Confidence 34457899995433 2356788888899998855443211 122233444333333211122222222222
Q ss_pred CceeeecCCHHHHHHHHHHhcCEEEEecCCcCcHHHHH
Q 028256 95 VGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELL 132 (211)
Q Consensus 95 ~~~~~~~~~~~~Rk~~m~~~sDa~IvlpGG~GTL~El~ 132 (211)
..-+-+..++ +.-....+.+.++.=.|||.|-+.=..
T Consensus 94 a~Vidvg~~~-~~~~~~~~~a~~~tPvpgGVGp~T~a~ 130 (140)
T cd05212 94 ATVINCSPTK-LSGDDVKESASLYVPMTGGVGKLTVAM 130 (140)
T ss_pred CEEEEcCCCc-ccchhhHhhceEEcCCCCCchHHHHHH
Confidence 1111111122 112334556888999999999876444
No 384
>PF07442 Ponericin: Ponericin; InterPro: IPR010002 This family contains a number of ponericin peptides (approximately 30 residues long) from the venom of the predatory ant Pachycondyla goeldii (Ponerine ant). These peptides exhibit antibacterial and insecticidal properties, and may adopt an amphipathic alpha-helical structure in polar environments such as cell membranes [].; GO: 0005576 extracellular region
Probab=24.00 E-value=50 Score=18.99 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=16.0
Q ss_pred HHHHHHHHHHcCCeEEecCCCCChhHHHHHHH
Q 028256 39 AIQLGKQLVERNIDLVYGGGSIGLMGLVSQAV 70 (211)
Q Consensus 39 A~~lG~~la~~g~~lv~GGg~~GlM~a~a~gA 70 (211)
...-+.+|-+. || |+|.|+..+|
T Consensus 6 ~k~~~~wlkkk--------gp-gi~kaal~aa 28 (29)
T PF07442_consen 6 LKKAGEWLKKK--------GP-GILKAALKAA 28 (29)
T ss_pred HHHHHHHHHhc--------Cc-hHHHHHHHhc
Confidence 44556666665 57 9999987765
No 385
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=23.90 E-value=1.6e+02 Score=24.61 Aligned_cols=38 Identities=24% Similarity=0.198 Sum_probs=23.7
Q ss_pred HHHHhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeC
Q 028256 110 EMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 152 (211)
Q Consensus 110 ~m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~ 152 (211)
++-+..|++|+.|.......+....+. ..+.|+++++.
T Consensus 51 ~~~~~vdgiii~~~~~~~~~~~i~~~~-----~~~iPvV~~~~ 88 (272)
T cd06313 51 MASQGWDFIAVDPLGIGTLTEAVQKAI-----ARGIPVIDMGT 88 (272)
T ss_pred HHHcCCCEEEEcCCChHHhHHHHHHHH-----HCCCcEEEeCC
Confidence 444558999998865554455433322 24678888864
No 386
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=23.83 E-value=3.5e+02 Score=25.39 Aligned_cols=79 Identities=19% Similarity=0.253 Sum_probs=48.4
Q ss_pred eeecCCHH-HHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCCCccc
Q 028256 98 VKAVSGMH-QRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAA 176 (211)
Q Consensus 98 ~~~~~~~~-~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~ 176 (211)
++..+++. .+..-+.+.||+++-.-=|-|-..=+.++.. +++||+-++.. +.+- + ++..
T Consensus 330 vvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~------~G~pI~afd~t--~~~~-~---------~i~~-- 389 (438)
T TIGR02919 330 VKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFE------YNLLILGFEET--AHNR-D---------FIAS-- 389 (438)
T ss_pred cEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHH------cCCcEEEEecc--cCCc-c---------cccC--
Confidence 34444433 3566778888888777655555555555555 89999988764 1110 1 1211
Q ss_pred ccceEEcCCHHHHHHHhhhhc
Q 028256 177 RYIIVSAQTAHELICKLEVFF 197 (211)
Q Consensus 177 ~~~i~~~~d~ee~~~~l~~~~ 197 (211)
..++-.++++++++.|.+..
T Consensus 390 -g~l~~~~~~~~m~~~i~~lL 409 (438)
T TIGR02919 390 -ENIFEHNEVDQLISKLKDLL 409 (438)
T ss_pred -CceecCCCHHHHHHHHHHHh
Confidence 34666788888888887654
No 387
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=23.81 E-value=2.3e+02 Score=24.94 Aligned_cols=52 Identities=17% Similarity=0.275 Sum_probs=32.0
Q ss_pred hcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCC--ccch-----hHHHHHHHHHHcCC
Q 028256 114 QADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD--GYYN-----SLLSFIDKAVDEGF 171 (211)
Q Consensus 114 ~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~~--g~~~-----~l~~~l~~~~~~g~ 171 (211)
.+|. |+.-||=||+.+.+..+. ..++|++=+|.+ ||.. ++.+.|+.+.+..|
T Consensus 63 ~~d~-vi~~GGDGt~l~~~~~~~-----~~~~pilGIn~G~lGFL~~~~~~~~~~~l~~~~~g~~ 121 (291)
T PRK02155 63 RADL-AVVLGGDGTMLGIGRQLA-----PYGVPLIGINHGRLGFITDIPLDDMQETLPPMLAGNY 121 (291)
T ss_pred CCCE-EEEECCcHHHHHHHHHhc-----CCCCCEEEEcCCCccccccCCHHHHHHHHHHHHcCCc
Confidence 4665 455588899998876543 246788767664 4543 34555666554443
No 388
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=23.54 E-value=4e+02 Score=26.85 Aligned_cols=46 Identities=15% Similarity=0.145 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHcCCeEEecCCCCChhHHHHHHHHhcCCeEEEE
Q 028256 34 SYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (211)
Q Consensus 34 ~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~a~gA~~~gG~viGv 80 (211)
.+...+.=+...|+..|+.+++|++. ---+.+++.|.+.+..++++
T Consensus 594 ~H~~ra~fv~~~l~~~GfeV~~~~~~-~s~e~~v~aa~~~~a~ivvl 639 (714)
T PRK09426 594 GHDRGAKVIATAFADLGFDVDIGPLF-QTPEEAARQAVENDVHVVGV 639 (714)
T ss_pred chhHhHHHHHHHHHhCCeeEecCCCC-CCHHHHHHHHHHcCCCEEEE
Confidence 35566666777888899999988765 55778999999999999998
No 389
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=23.49 E-value=1.2e+02 Score=24.87 Aligned_cols=32 Identities=19% Similarity=0.146 Sum_probs=19.5
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeE
Q 028256 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVE-RNIDL 53 (211)
Q Consensus 19 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~-~g~~l 53 (211)
++|.|+.+|..++. .+.|+.+.+.+.+ .|..+
T Consensus 2 ~kilIvy~S~~G~T---~~lA~~ia~g~~~~~G~ev 34 (200)
T PRK03767 2 AKVLVLYYSMYGHI---ETMAEAVAEGAREVAGAEV 34 (200)
T ss_pred CeEEEEEcCCCCHH---HHHHHHHHHHHhhcCCcEE
Confidence 46777767776532 2566777776665 66554
No 390
>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.41 E-value=1.1e+02 Score=25.88 Aligned_cols=29 Identities=31% Similarity=0.494 Sum_probs=25.7
Q ss_pred CeEEecCCCCChhHHHHHHHHhcCCeEEEE
Q 028256 51 IDLVYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (211)
Q Consensus 51 ~~lv~GGg~~GlM~a~a~gA~~~gG~viGv 80 (211)
..++||.|. |+=.+....-.++|.+||.|
T Consensus 9 ~vlvTgaga-GIG~~~v~~La~aGA~ViAv 37 (245)
T KOG1207|consen 9 IVLVTGAGA-GIGKEIVLSLAKAGAQVIAV 37 (245)
T ss_pred EEEeecccc-cccHHHHHHHHhcCCEEEEE
Confidence 356899986 99999999999999999998
No 391
>PLN02949 transferase, transferring glycosyl groups
Probab=23.39 E-value=2.7e+02 Score=26.18 Aligned_cols=70 Identities=17% Similarity=0.115 Sum_probs=42.8
Q ss_pred HHHHHhcCEEEEe--cCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCCCcccccceEEcCCH
Q 028256 109 AEMARQADAFIAL--PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTA 186 (211)
Q Consensus 109 ~~m~~~sDa~Ivl--pGG~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ 186 (211)
..+...||++|.- .-|+|. =+.|+++ .++|++..|.+|-+.+++.--.. -..|++ ++|+
T Consensus 349 ~~ll~~a~~~v~~s~~E~FGi--vvlEAMA------~G~PVIa~~~gGp~~eIV~~~~~-g~tG~l----------~~~~ 409 (463)
T PLN02949 349 VRLLGGAVAGLHSMIDEHFGI--SVVEYMA------AGAVPIAHNSAGPKMDIVLDEDG-QQTGFL----------ATTV 409 (463)
T ss_pred HHHHHhCcEEEeCCccCCCCh--HHHHHHH------cCCcEEEeCCCCCcceeeecCCC-Cccccc----------CCCH
Confidence 3356788988753 367776 3666676 78999999987765444320000 011322 3678
Q ss_pred HHHHHHhhhhc
Q 028256 187 HELICKLEVFF 197 (211)
Q Consensus 187 ee~~~~l~~~~ 197 (211)
+++.+.|.+..
T Consensus 410 ~~la~ai~~ll 420 (463)
T PLN02949 410 EEYADAILEVL 420 (463)
T ss_pred HHHHHHHHHHH
Confidence 88877777654
No 392
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=23.38 E-value=4.7e+02 Score=22.27 Aligned_cols=69 Identities=9% Similarity=0.109 Sum_probs=42.4
Q ss_pred CcceEEEEeCCCCCC---CHHHHHHHHHHHHHHHHcCCeEEecCCCCChhHHH--HHHHHhcCCeEEEEecCcCC
Q 028256 17 RFKRVCVFCGSSPGK---SPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLV--SQAVYDGGRHVLGVIPKTLM 86 (211)
Q Consensus 17 ~~~~I~Vfggs~~~~---~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~--a~gA~~~gG~viGv~P~~~~ 86 (211)
...-|.|.|++.... .++..+..+...+.. .....|+.|-|....-+++ ++.|.++|..-+-++|..+.
T Consensus 31 Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~-~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP~y~ 104 (281)
T cd00408 31 GVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAV-AGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVPPYYN 104 (281)
T ss_pred CCCEEEECCCCcccccCCHHHHHHHHHHHHHHh-CCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCCcCC
Confidence 456677776655443 344444444444433 3457888888765664444 56677889888888776543
No 393
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=23.38 E-value=2.3e+02 Score=24.34 Aligned_cols=34 Identities=26% Similarity=0.563 Sum_probs=22.5
Q ss_pred hcCEEEEecCCcCcHHHHHHHHHHHHhCCCC-CcEEEEeC
Q 028256 114 QADAFIALPGGYGTLEELLEVITWAQLGIHD-KPVGLLNV 152 (211)
Q Consensus 114 ~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~-kPiill~~ 152 (211)
..| +|+.-||=||+.|+...+. +... .|+.++..
T Consensus 57 ~~d-~ivv~GGDGTl~~v~~~l~----~~~~~~~lgiiP~ 91 (293)
T TIGR00147 57 GVD-TVIAGGGDGTINEVVNALI----QLDDIPALGILPL 91 (293)
T ss_pred CCC-EEEEECCCChHHHHHHHHh----cCCCCCcEEEEcC
Confidence 345 5667899999999987663 1122 36777754
No 394
>PRK07035 short chain dehydrogenase; Provisional
Probab=23.35 E-value=1.2e+02 Score=24.97 Aligned_cols=31 Identities=16% Similarity=0.143 Sum_probs=20.6
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEecC
Q 028256 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGG 57 (211)
Q Consensus 19 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GG 57 (211)
++|.|.|+|+. ....+++.|+++|+.|+--+
T Consensus 9 k~vlItGas~g--------IG~~l~~~l~~~G~~Vi~~~ 39 (252)
T PRK07035 9 KIALVTGASRG--------IGEAIAKLLAQQGAHVIVSS 39 (252)
T ss_pred CEEEEECCCcH--------HHHHHHHHHHHCCCEEEEEe
Confidence 45667765542 24677888888899877544
No 395
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=23.28 E-value=3.4e+02 Score=24.72 Aligned_cols=62 Identities=18% Similarity=0.254 Sum_probs=41.6
Q ss_pred CCCCCceeeecCCHHHHHHHHHHhcCE-EEEecCCc----CcHHH-HHHHHHHHHhC-CCCCcEEEEeC
Q 028256 91 TGDTVGEVKAVSGMHQRKAEMARQADA-FIALPGGY----GTLEE-LLEVITWAQLG-IHDKPVGLLNV 152 (211)
Q Consensus 91 ~~~~~~~~~~~~~~~~Rk~~m~~~sDa-~IvlpGG~----GTL~E-l~~~~~~~~lg-~~~kPiill~~ 152 (211)
..+.+..++.+.++.+|...+...-++ +=+.-||+ -|.++ +-.+..+..+. ....||-.|++
T Consensus 165 s~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~pdsVPIn~l~P 233 (335)
T COG0502 165 SPEFYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANLPTPDSVPINFLNP 233 (335)
T ss_pred CHHHHcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHHHHHHHHHHhCCCCCeeeeeeecC
Confidence 344566788889999999887665443 33334443 35555 55666777777 56789998876
No 396
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=23.26 E-value=2.6e+02 Score=19.32 Aligned_cols=58 Identities=14% Similarity=0.074 Sum_probs=41.2
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEecCCCCChhHHHHHHHHhcCCeEEEEe
Q 028256 21 VCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVI 81 (211)
Q Consensus 21 I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~a~gA~~~gG~viGv~ 81 (211)
|+|++-+.. ++.+.+.|.++.+.|-++|+.+..=-.. .=++.--+-|...|-+.+-|+
T Consensus 2 v~Ii~~~~~--~~~~~~~a~~l~~~L~~~gi~v~~d~~~-~~~~k~~~~a~~~g~p~~iii 59 (94)
T PF03129_consen 2 VVIIPVGKK--DEEIIEYAQELANKLRKAGIRVELDDSD-KSLGKQIKYADKLGIPFIIII 59 (94)
T ss_dssp EEEEESSCS--HHHHHHHHHHHHHHHHHTTSEEEEESSS-STHHHHHHHHHHTTESEEEEE
T ss_pred EEEEEeCCC--cHHHHHHHHHHHHHHHHCCCEEEEECCC-CchhHHHHHHhhcCCeEEEEE
Confidence 556654333 5678899999999999999877555444 567777777888776655554
No 397
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=23.23 E-value=2.5e+02 Score=19.61 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=19.3
Q ss_pred cCcceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeE
Q 028256 16 SRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDL 53 (211)
Q Consensus 16 ~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~l 53 (211)
.+-+.|.|+|.+.. .+...++.|.+.|+.+
T Consensus 59 ~~~~~ivv~C~~G~--------rs~~aa~~L~~~G~~~ 88 (100)
T cd01523 59 PDDQEVTVICAKEG--------SSQFVAELLAERGYDV 88 (100)
T ss_pred CCCCeEEEEcCCCC--------cHHHHHHHHHHcCcee
Confidence 34567888886542 1345666777888873
No 398
>PRK08339 short chain dehydrogenase; Provisional
Probab=23.18 E-value=1.3e+02 Score=25.35 Aligned_cols=19 Identities=11% Similarity=0.232 Sum_probs=13.9
Q ss_pred HHHHHHHHHHcCCeEEecC
Q 028256 39 AIQLGKQLVERNIDLVYGG 57 (211)
Q Consensus 39 A~~lG~~la~~g~~lv~GG 57 (211)
..++++.|+++|+.|+.-+
T Consensus 21 G~aia~~l~~~G~~V~~~~ 39 (263)
T PRK08339 21 GFGVARVLARAGADVILLS 39 (263)
T ss_pred HHHHHHHHHHCCCEEEEEe
Confidence 4567788888898876544
No 399
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=23.10 E-value=2.5e+02 Score=23.43 Aligned_cols=107 Identities=18% Similarity=0.222 Sum_probs=60.8
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeE--EecCCCCChhHHHHHHHHhcCCeEEEEecCcCCCCCCCCC--
Q 028256 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDL--VYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGD-- 93 (211)
Q Consensus 18 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~l--v~GGg~~GlM~a~a~gA~~~gG~viGv~P~~~~~~e~~~~-- 93 (211)
.+.|+|+=+. ++ +.|.++++.|.+.|+.+ ||==.+ +..+++.+-..+.....+|.-. .+ ..|....
T Consensus 8 ~~iiaVir~~----~~---~~a~~~~~al~~gGi~~iEiT~~t~-~a~~~I~~l~~~~p~~~vGAGT-V~-~~e~a~~a~ 77 (196)
T PF01081_consen 8 NKIIAVIRGD----DP---EDAVPIAEALIEGGIRAIEITLRTP-NALEAIEALRKEFPDLLVGAGT-VL-TAEQAEAAI 77 (196)
T ss_dssp HSEEEEETTS----SG---GGHHHHHHHHHHTT--EEEEETTST-THHHHHHHHHHHHTTSEEEEES----SHHHHHHHH
T ss_pred CCEEEEEEcC----CH---HHHHHHHHHHHHCCCCEEEEecCCc-cHHHHHHHHHHHCCCCeeEEEe-cc-CHHHHHHHH
Confidence 4678888322 22 45788999999999887 344445 7778777666667778888731 11 1111100
Q ss_pred -CCceeeecCCHHHHHHHHHHhcCEEEEecCCcCcHHHHHHHHH
Q 028256 94 -TVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVIT 136 (211)
Q Consensus 94 -~~~~~~~~~~~~~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~ 136 (211)
-=.+.++.+.+...-.......+ +.++|| .-|..|+..++.
T Consensus 78 ~aGA~FivSP~~~~~v~~~~~~~~-i~~iPG-~~TptEi~~A~~ 119 (196)
T PF01081_consen 78 AAGAQFIVSPGFDPEVIEYAREYG-IPYIPG-VMTPTEIMQALE 119 (196)
T ss_dssp HHT-SEEEESS--HHHHHHHHHHT-SEEEEE-ESSHHHHHHHHH
T ss_pred HcCCCEEECCCCCHHHHHHHHHcC-CcccCC-cCCHHHHHHHHH
Confidence 00234566666544444444333 666775 468899988886
No 400
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=23.04 E-value=2.2e+02 Score=24.16 Aligned_cols=69 Identities=16% Similarity=0.100 Sum_probs=41.3
Q ss_pred HHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHh-CCCCCcEEEEeCCccchhHHHHHHHHHHcCCCCcccccceEEcC
Q 028256 106 QRKAEMARQADAFIALPGGYGTLEELLEVITWAQL-GIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQ 184 (211)
Q Consensus 106 ~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~l-g~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~ 184 (211)
.+....++.+|.+|+++ -..+ +.-++.+... ...+.|++++|.+... ++. ...+.+..
T Consensus 169 ~~a~~~~~~~dl~lviG-Tsl~---V~p~~~l~~~~~~~~~~~i~iN~~~~~---------------~~~--~~~~~i~~ 227 (242)
T PRK00481 169 DEAYEALEEADLFIVIG-TSLV---VYPAAGLPYEAREHGAKTVEINLEPTP---------------LDS--LFDLVIHG 227 (242)
T ss_pred HHHHHHHhcCCEEEEEC-CCce---EcCHhHHHHHHHHCCCeEEEECCCCCC---------------CCC--ccCEEEEC
Confidence 45555667889988865 3332 3233333321 2257899999986311 111 12378888
Q ss_pred CHHHHHHHhhh
Q 028256 185 TAHELICKLEV 195 (211)
Q Consensus 185 d~ee~~~~l~~ 195 (211)
+.+++++.|.+
T Consensus 228 ~~~~~l~~l~~ 238 (242)
T PRK00481 228 KAGEVVPELVE 238 (242)
T ss_pred CHHHHHHHHHH
Confidence 99999988854
No 401
>PLN02891 IMP cyclohydrolase
Probab=23.02 E-value=1.2e+02 Score=29.57 Aligned_cols=34 Identities=29% Similarity=0.346 Sum_probs=28.5
Q ss_pred HHHHHHHHHcCCeEEecCCCCChhHHHHHHHHhcCCeEEEE
Q 028256 40 IQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (211)
Q Consensus 40 ~~lG~~la~~g~~lv~GGg~~GlM~a~a~gA~~~gG~viGv 80 (211)
.+|++.|.+.|+.|++-||. ++--.++|-.|+-|
T Consensus 36 ~~fAk~L~~~gveIiSTgGT-------ak~L~e~Gi~v~~V 69 (547)
T PLN02891 36 ALLANGLQELGYTIVSTGGT-------ASALEAAGVSVTKV 69 (547)
T ss_pred HHHHHHHHHCCCEEEEcchH-------HHHHHHcCCceeeH
Confidence 57999999999999999986 55567788888776
No 402
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=22.91 E-value=57 Score=27.77 Aligned_cols=34 Identities=18% Similarity=0.286 Sum_probs=20.3
Q ss_pred EEEecCCcCcHHHHHHHHHHHHhC----CCCCcEEEEe
Q 028256 118 FIALPGGYGTLEELLEVITWAQLG----IHDKPVGLLN 151 (211)
Q Consensus 118 ~IvlpGG~GTL~El~~~~~~~~lg----~~~kPiill~ 151 (211)
.|++|||.|.+..+..--.+.++- ..+|||..+-
T Consensus 97 av~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIC 134 (231)
T cd03147 97 IFFVAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVC 134 (231)
T ss_pred EEEECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEC
Confidence 678999999866554322222211 2578887763
No 403
>PRK12367 short chain dehydrogenase; Provisional
Probab=22.90 E-value=1.2e+02 Score=25.54 Aligned_cols=12 Identities=8% Similarity=-0.103 Sum_probs=8.2
Q ss_pred CCHHHHHHHhhh
Q 028256 184 QTAHELICKLEV 195 (211)
Q Consensus 184 ~d~ee~~~~l~~ 195 (211)
-+|+++.+.+..
T Consensus 196 ~~~~~vA~~i~~ 207 (245)
T PRK12367 196 MSADFVAKQILD 207 (245)
T ss_pred CCHHHHHHHHHH
Confidence 377887777654
No 404
>PRK07023 short chain dehydrogenase; Provisional
Probab=22.87 E-value=1.4e+02 Score=24.44 Aligned_cols=30 Identities=23% Similarity=0.132 Sum_probs=0.0
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEe
Q 028256 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVY 55 (211)
Q Consensus 18 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~ 55 (211)
|++|.|.|+++.. ...+++.|+++|+.++.
T Consensus 1 ~~~vlItGasggi--------G~~ia~~l~~~G~~v~~ 30 (243)
T PRK07023 1 AVRAIVTGHSRGL--------GAALAEQLLQPGIAVLG 30 (243)
T ss_pred CceEEEecCCcch--------HHHHHHHHHhCCCEEEE
No 405
>PRK07775 short chain dehydrogenase; Provisional
Probab=22.69 E-value=4.2e+02 Score=22.17 Aligned_cols=32 Identities=16% Similarity=0.109 Sum_probs=22.4
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEecC
Q 028256 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGG 57 (211)
Q Consensus 18 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GG 57 (211)
.+.|.|.|+++. ....+.+.|+++|+.|+...
T Consensus 10 ~~~vlVtGa~g~--------iG~~la~~L~~~G~~V~~~~ 41 (274)
T PRK07775 10 RRPALVAGASSG--------IGAATAIELAAAGFPVALGA 41 (274)
T ss_pred CCEEEEECCCch--------HHHHHHHHHHHCCCEEEEEe
Confidence 457888866542 34678888899999886544
No 406
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=22.69 E-value=84 Score=23.73 Aligned_cols=38 Identities=26% Similarity=0.218 Sum_probs=25.5
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEe
Q 028256 17 RFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVY 55 (211)
Q Consensus 17 ~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~ 55 (211)
+.++.+|||-.+..-.. |...++.+-+.|.+.|..++.
T Consensus 86 ~~~~~avfg~Gd~~~~~-f~~~~k~l~~~l~~~G~~~~~ 123 (143)
T PF00258_consen 86 KGKKYAVFGLGDSGYGG-FCAAAKKLDERLEELGAKRVG 123 (143)
T ss_dssp TTCEEEEEEEEETTSST-TTHHHHHHHHHHHHTTEEEES
T ss_pred ccceeeeeecCCccchh-hhhHHHHHHHHHHHCCCEEEE
Confidence 34566776322222223 888899999999999888874
No 407
>COG0148 Eno Enolase [Carbohydrate transport and metabolism]
Probab=22.67 E-value=3.3e+02 Score=25.59 Aligned_cols=75 Identities=21% Similarity=0.159 Sum_probs=48.8
Q ss_pred eecCCHH------HHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCC
Q 028256 99 KAVSGMH------QRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFI 172 (211)
Q Consensus 99 ~~~~~~~------~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i 172 (211)
++.++++ -|+-+=...++++++-|==+|||.|.+++..+.+-.-+ +||+-=....=-|..++=|--....|+|
T Consensus 306 ivGDDLfvTN~~~l~~gi~~g~aNaiLIK~NQIGTLTEt~~ai~~A~~~gy-~~viSHRSGETeD~tIAdLAVa~~agqI 384 (423)
T COG0148 306 IVGDDLFVTNPKRLKKGIEKGAANAILIKPNQIGTLTETLEAINLAKDAGY-TAVISHRSGETEDTTIADLAVATNAGQI 384 (423)
T ss_pred EECCcceecCHHHHHHHHHhccCceEEEechhcccHHHHHHHHHHHHHCCC-eEEEecCCCCcccchHHHHHHHhCCCee
Confidence 4455553 45555556689999999999999999999987775322 4665544333345555544444556666
Q ss_pred Cc
Q 028256 173 AP 174 (211)
Q Consensus 173 ~~ 174 (211)
..
T Consensus 385 KT 386 (423)
T COG0148 385 KT 386 (423)
T ss_pred ec
Confidence 43
No 408
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=22.67 E-value=4.2e+02 Score=22.00 Aligned_cols=56 Identities=14% Similarity=0.124 Sum_probs=0.0
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEecCCCCChhHHHHHHHHhcCCeEEEE
Q 028256 17 RFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (211)
Q Consensus 17 ~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~a~gA~~~gG~viGv 80 (211)
+.+++.|.|+++ -....+++.|+++|+.|+..+-..---+...+...+.++++..+
T Consensus 9 ~~k~vlVtGas~--------giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~ 64 (278)
T PRK08277 9 KGKVAVITGGGG--------VLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAV 64 (278)
T ss_pred CCCEEEEeCCCc--------hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEE
No 409
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=22.66 E-value=4.8e+02 Score=23.51 Aligned_cols=12 Identities=25% Similarity=0.418 Sum_probs=10.4
Q ss_pred hcCEEEEecCCc
Q 028256 114 QADAFIALPGGY 125 (211)
Q Consensus 114 ~sDa~IvlpGG~ 125 (211)
.+|++|.++||.
T Consensus 81 ~~D~IIaiGGGS 92 (347)
T cd08184 81 LPCAIVGIGGGS 92 (347)
T ss_pred CCCEEEEeCCcH
Confidence 579999999984
No 410
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=22.66 E-value=3.1e+02 Score=24.38 Aligned_cols=68 Identities=18% Similarity=0.270 Sum_probs=39.5
Q ss_pred HHHHHHHhcCEEEEe--cCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCCCcccccceEEcC
Q 028256 107 RKAEMARQADAFIAL--PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQ 184 (211)
Q Consensus 107 Rk~~m~~~sDa~Ivl--pGG~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~ 184 (211)
....++..||++|.- ..|+|. =+.|+++ .++||+.-+..|. .+++. ++. .++...
T Consensus 262 ~~~~~l~~ad~~v~pS~~E~~g~--~~~EAma------~G~PVI~s~~gg~-~e~i~-------~~~-------~~~~~~ 318 (398)
T cd03796 262 RVRDVLVQGHIFLNTSLTEAFCI--AIVEAAS------CGLLVVSTRVGGI-PEVLP-------PDM-------ILLAEP 318 (398)
T ss_pred HHHHHHHhCCEEEeCChhhccCH--HHHHHHH------cCCCEEECCCCCc-hhhee-------CCc-------eeecCC
Confidence 344467889987753 234552 3567776 7999998776543 22221 111 233455
Q ss_pred CHHHHHHHhhhhc
Q 028256 185 TAHELICKLEVFF 197 (211)
Q Consensus 185 d~ee~~~~l~~~~ 197 (211)
|++++.+.|.+..
T Consensus 319 ~~~~l~~~l~~~l 331 (398)
T cd03796 319 DVESIVRKLEEAI 331 (398)
T ss_pred CHHHHHHHHHHHH
Confidence 7777777776543
No 411
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=22.63 E-value=2.2e+02 Score=25.90 Aligned_cols=49 Identities=10% Similarity=0.087 Sum_probs=27.7
Q ss_pred CCc-EEEEeCCccchhHHHHHHHHHHcCCCCcccccceEEcCCHHHHHHHhhh
Q 028256 144 DKP-VGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKLEV 195 (211)
Q Consensus 144 ~kP-iill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee~~~~l~~ 195 (211)
.+| +++++..-|+......+..+...-.. ....+++.-+++++.++..+
T Consensus 125 srpllvilDd~fy~ks~Ryel~~LAr~~~~---~~~~V~ld~ple~~l~RN~~ 174 (340)
T TIGR03575 125 SRPLCLVLDDNFYYQSMRYEVYQLARKYSL---GFCQLFLDCPVESCLLRNKQ 174 (340)
T ss_pred hCCCCceecCCCCCHHHHHHHHHHHHHhCC---CEEEEEEeCCHHHHHHHHhc
Confidence 567 45666655566666655554432111 12346666777777777654
No 412
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=22.60 E-value=2.1e+02 Score=25.07 Aligned_cols=47 Identities=21% Similarity=0.195 Sum_probs=34.4
Q ss_pred hhcCcceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEecCCCCChhHHHH
Q 028256 14 LKSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVS 67 (211)
Q Consensus 14 ~~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~a 67 (211)
+.+..+.|.|-|.|+-+.. .+|+++++++|+.++--.-..--|...+
T Consensus 3 ~~~~~k~VlItgcs~GGIG-------~ala~ef~~~G~~V~AtaR~~e~M~~L~ 49 (289)
T KOG1209|consen 3 LQSQPKKVLITGCSSGGIG-------YALAKEFARNGYLVYATARRLEPMAQLA 49 (289)
T ss_pred cccCCCeEEEeecCCcchh-------HHHHHHHHhCCeEEEEEccccchHhhHH
Confidence 3455678999988776642 4688889999999988776655566554
No 413
>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional
Probab=22.59 E-value=1.1e+02 Score=26.86 Aligned_cols=18 Identities=22% Similarity=0.386 Sum_probs=13.2
Q ss_pred HHHHHHHHHHcCCeEEec
Q 028256 39 AIQLGKQLVERNIDLVYG 56 (211)
Q Consensus 39 A~~lG~~la~~g~~lv~G 56 (211)
.+++++.||++|..||..
T Consensus 23 G~a~A~~la~~Ga~Vvv~ 40 (299)
T PRK06300 23 GWGIAKALAEAGATILVG 40 (299)
T ss_pred HHHHHHHHHHCCCEEEEE
Confidence 466777778888888764
No 414
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=22.58 E-value=3.6e+02 Score=20.65 Aligned_cols=60 Identities=18% Similarity=0.097 Sum_probs=36.5
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeE----EecCC------CCChhHHHHHHHHhcCCeEEEEe
Q 028256 21 VCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDL----VYGGG------SIGLMGLVSQAVYDGGRHVLGVI 81 (211)
Q Consensus 21 I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~l----v~GGg------~~GlM~a~a~gA~~~gG~viGv~ 81 (211)
.+.|-|++....-.-...|+++++.+-+.|+.- +-|.| + |--+..+--++...|..|+.|
T Consensus 34 ~~g~kg~kk~TpyAAq~aa~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~-G~Gr~~air~l~~~glkI~~I 103 (114)
T TIGR03628 34 MVVKADRDESSPYAAMQAAGRAAEKAKERGITGLHIKVRAPGGNGQKSP-GPGAQAAIRALARAGLRIGRI 103 (114)
T ss_pred ceEeCCCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEecCCCCCCCC-CCcHHHHHHHHHHCCCEEEEE
Confidence 345655554433344567788888888888754 55633 4 555555555666666666665
No 415
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=22.54 E-value=6.2e+02 Score=24.03 Aligned_cols=33 Identities=18% Similarity=0.277 Sum_probs=23.3
Q ss_pred cCCeEEecCCCCChhHHHHHHHHhc-----C-CeEEEEe
Q 028256 49 RNIDLVYGGGSIGLMGLVSQAVYDG-----G-RHVLGVI 81 (211)
Q Consensus 49 ~g~~lv~GGg~~GlM~a~a~gA~~~-----g-G~viGv~ 81 (211)
-...|||+||+.--|-++.+++... + ..++|+.
T Consensus 88 ~~iaIvT~GG~~PGlN~vIr~iv~~~~~~~~v~~V~Gi~ 126 (459)
T PTZ00286 88 VKAGIVTCGGLCPGLNVVIRELVMNLINNYGVKTIYGAK 126 (459)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 4567899999988887777665432 3 3788873
No 416
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=22.43 E-value=1e+02 Score=26.01 Aligned_cols=12 Identities=33% Similarity=0.966 Sum_probs=9.4
Q ss_pred EEEecCCcCcHH
Q 028256 118 FIALPGGYGTLE 129 (211)
Q Consensus 118 ~IvlpGG~GTL~ 129 (211)
.|++|||.|..+
T Consensus 85 alviPGG~~~~~ 96 (213)
T cd03133 85 ALIFPGGFGAAK 96 (213)
T ss_pred EEEECCCCchhh
Confidence 678999998743
No 417
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=22.42 E-value=4.1e+02 Score=21.27 Aligned_cols=31 Identities=16% Similarity=0.042 Sum_probs=22.0
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEec
Q 028256 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYG 56 (211)
Q Consensus 18 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~G 56 (211)
+++|.|.|+++ ....++++.|+++|+.++.-
T Consensus 5 ~~~ilI~Gasg--------~iG~~la~~l~~~g~~v~~~ 35 (247)
T PRK05565 5 GKVAIVTGASG--------GIGRAIAELLAKEGAKVVIA 35 (247)
T ss_pred CCEEEEeCCCc--------HHHHHHHHHHHHCCCEEEEE
Confidence 45788887654 23467778888889998765
No 418
>PF09345 DUF1987: Domain of unknown function (DUF1987); InterPro: IPR018530 This family of proteins are functionally uncharacterised.
Probab=22.41 E-value=1.4e+02 Score=22.18 Aligned_cols=16 Identities=19% Similarity=0.696 Sum_probs=13.5
Q ss_pred ccchhHHHHHHHHHHc
Q 028256 154 GYYNSLLSFIDKAVDE 169 (211)
Q Consensus 154 g~~~~l~~~l~~~~~~ 169 (211)
.||+|+++||+.-.++
T Consensus 25 ~Fy~Pi~~wl~~Yl~~ 40 (99)
T PF09345_consen 25 AFYQPILDWLEAYLAE 40 (99)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 5999999999886665
No 419
>PRK10537 voltage-gated potassium channel; Provisional
Probab=22.40 E-value=6.2e+02 Score=23.35 Aligned_cols=94 Identities=15% Similarity=0.129 Sum_probs=50.2
Q ss_pred cCCeEEecCCCCChhHHHHHHHHhcCCeEEEEecCcCCCCCCCCCCCceeeecC--CHHHHHHHHHHhcCEEEEecCCcC
Q 028256 49 RNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVS--GMHQRKAEMARQADAFIALPGGYG 126 (211)
Q Consensus 49 ~g~~lv~GGg~~GlM~a~a~gA~~~gG~viGv~P~~~~~~e~~~~~~~~~~~~~--~~~~Rk~~m~~~sDa~IvlpGG~G 126 (211)
++|.||+|.|+.| ..+++.-.+.|-.++-|.++.. .+...+. .+.+..+ +...=++.-++.|+++|++..--
T Consensus 240 k~HvII~G~g~lg--~~v~~~L~~~g~~vvVId~d~~--~~~~~~g-~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD- 313 (393)
T PRK10537 240 KDHFIICGHSPLA--INTYLGLRQRGQAVTVIVPLGL--EHRLPDD-ADLIPGDSSDSAVLKKAGAARARAILALRDND- 313 (393)
T ss_pred CCeEEEECCChHH--HHHHHHHHHCCCCEEEEECchh--hhhccCC-CcEEEeCCCCHHHHHhcCcccCCEEEEcCCCh-
Confidence 6999999987633 4466665666777777765422 1111112 1233332 23333334467889999887652
Q ss_pred cHHHHHHHHHHHHhCCCCCcEEEE
Q 028256 127 TLEELLEVITWAQLGIHDKPVGLL 150 (211)
Q Consensus 127 TL~El~~~~~~~~lg~~~kPiill 150 (211)
-+-++-+++.++++. +.+++..
T Consensus 314 -~~Nl~ivL~ar~l~p-~~kIIa~ 335 (393)
T PRK10537 314 -ADNAFVVLAAKEMSS-DVKTVAA 335 (393)
T ss_pred -HHHHHHHHHHHHhCC-CCcEEEE
Confidence 222334445555543 3455543
No 420
>PRK11096 ansB L-asparaginase II; Provisional
Probab=22.32 E-value=1.2e+02 Score=27.50 Aligned_cols=49 Identities=24% Similarity=0.348 Sum_probs=34.0
Q ss_pred HhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeC-----CccchhHHHHHH
Q 028256 113 RQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV-----DGYYNSLLSFID 164 (211)
Q Consensus 113 ~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~-----~g~~~~l~~~l~ 164 (211)
+..|+|||..| .-||+|....+++. +. .+||||+.+. .-..|...++.+
T Consensus 99 ~~~dGiVVtHG-TDTme~tA~~Ls~~-~~-~~kPVVlTGAmrP~~~~~sDg~~NL~~ 152 (347)
T PRK11096 99 DKTDGFVITHG-TDTMEETAYFLDLT-VK-CDKPVVLVGAMRPSTAMSADGPLNLYN 152 (347)
T ss_pred CCCCEEEEeCC-CchHHHHHHHHHHh-cc-CCCCEEEeCCCCCCCCcCCchHHHHHH
Confidence 44678888765 79999999988874 33 4899999863 224455555443
No 421
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=22.31 E-value=6.1e+02 Score=23.25 Aligned_cols=71 Identities=11% Similarity=0.068 Sum_probs=39.2
Q ss_pred HHHHHhcCEEEEec--CCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCCCcc-cccceEEcCC
Q 028256 109 AEMARQADAFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPA-ARYIIVSAQT 185 (211)
Q Consensus 109 ~~m~~~sDa~Ivlp--GG~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~-~~~~i~~~~d 185 (211)
..+...||++|+-. .+.|. =+.|+++ .++|+|.-+.+|.-+-+.. +-.... ....++-..|
T Consensus 360 ~~~~~~aDv~l~pS~~E~~gl--~~lEAma------~G~pvI~s~~gg~~e~v~~--------~~~~~~~~~G~l~~~~d 423 (473)
T TIGR02095 360 HLIYAGADFILMPSRFEPCGL--TQLYAMR------YGTVPIVRRTGGLADTVVD--------GDPEAESGTGFLFEEYD 423 (473)
T ss_pred HHHHHhCCEEEeCCCcCCcHH--HHHHHHH------CCCCeEEccCCCccceEec--------CCCCCCCCceEEeCCCC
Confidence 34678899877532 34453 2355665 7889998887765443321 100000 1122333468
Q ss_pred HHHHHHHhhh
Q 028256 186 AHELICKLEV 195 (211)
Q Consensus 186 ~ee~~~~l~~ 195 (211)
++++.+.|.+
T Consensus 424 ~~~la~~i~~ 433 (473)
T TIGR02095 424 PGALLAALSR 433 (473)
T ss_pred HHHHHHHHHH
Confidence 8887777654
No 422
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=22.24 E-value=1.4e+02 Score=27.90 Aligned_cols=49 Identities=29% Similarity=0.360 Sum_probs=0.0
Q ss_pred HHHHHHHcCCeE-EecCCCCChhHHHHHHHHhcCCeEEEEecCcCCCCCCCCCC
Q 028256 42 LGKQLVERNIDL-VYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDT 94 (211)
Q Consensus 42 lG~~la~~g~~l-v~GGg~~GlM~a~a~gA~~~gG~viGv~P~~~~~~e~~~~~ 94 (211)
+.++..+..|.| |-|||..|| |.++.|...|.+|.-+ ++..|-.+....
T Consensus 11 l~~~~~sydyDLIviGgGSgGL--acaKeAa~~G~kV~~l--DfV~PtP~GtsW 60 (503)
T KOG4716|consen 11 LARLFSSYDYDLIVIGGGSGGL--ACAKEAADLGAKVACL--DFVKPTPQGTSW 60 (503)
T ss_pred hhhhcccCCccEEEEcCCcchh--hHHHHHHhcCCcEEEE--eecccCCCCCcc
No 423
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=22.22 E-value=1.3e+02 Score=25.12 Aligned_cols=10 Identities=50% Similarity=0.943 Sum_probs=7.1
Q ss_pred HhcCEEEEecC
Q 028256 113 RQADAFIALPG 123 (211)
Q Consensus 113 ~~sDa~IvlpG 123 (211)
..+|++| +||
T Consensus 38 ~~~d~iI-lPG 47 (210)
T CHL00188 38 AQVHALV-LPG 47 (210)
T ss_pred hhCCEEE-ECC
Confidence 4588755 787
No 424
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=22.21 E-value=3.4e+02 Score=24.72 Aligned_cols=13 Identities=38% Similarity=0.672 Sum_probs=11.0
Q ss_pred HhcCEEEEecCCc
Q 028256 113 RQADAFIALPGGY 125 (211)
Q Consensus 113 ~~sDa~IvlpGG~ 125 (211)
..+|++|.++||.
T Consensus 87 ~~~D~IiaiGGGS 99 (383)
T PRK09860 87 NNCDSVISLGGGS 99 (383)
T ss_pred cCCCEEEEeCCch
Confidence 4689999999984
No 425
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=22.21 E-value=2.6e+02 Score=25.42 Aligned_cols=39 Identities=33% Similarity=0.388 Sum_probs=25.9
Q ss_pred HhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCc
Q 028256 113 RQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDG 154 (211)
Q Consensus 113 ~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~~g 154 (211)
..=|.+|+.||+.||..=+..-++ +++. ..+||=++..+
T Consensus 179 ~~fD~vVva~gs~gT~AGl~~g~~--~~~~-~~~ViG~~v~~ 217 (323)
T COG2515 179 LKFDSVVVAPGSGGTHAGLLVGLA--QLGP-DVEVIGIDVSA 217 (323)
T ss_pred cCCCEEEEeCCCcchHHHHHHHhh--hccC-CCceEEEeecC
Confidence 445899999999999887764443 4433 45666555543
No 426
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=22.19 E-value=1.5e+02 Score=29.94 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=20.4
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEE
Q 028256 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV 54 (211)
Q Consensus 18 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv 54 (211)
+++|+|++|......+.=...|+.+.+.|-+.||.++
T Consensus 451 ~~~i~vl~GG~S~E~~vSl~s~~~v~~al~~~~~~v~ 487 (809)
T PRK14573 451 KLSLGLVCGGKSCEHDISLLSAKNIAKYLSPEFYDVS 487 (809)
T ss_pred CcEEEEEECCCCCchHHHHHhHHHHHHhhcccCcEEE
Confidence 3455555555544444444556666666666666553
No 427
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.02 E-value=3.5e+02 Score=23.92 Aligned_cols=53 Identities=25% Similarity=0.345 Sum_probs=31.5
Q ss_pred HhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCC--ccch-----hHHHHHHHHHHcCC
Q 028256 113 RQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD--GYYN-----SLLSFIDKAVDEGF 171 (211)
Q Consensus 113 ~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~~--g~~~-----~l~~~l~~~~~~g~ 171 (211)
+.+|.+| .-||=||+-.....+. .+++||+=+|.+ ||.. ++.+.++.+.+..|
T Consensus 62 ~~~d~vi-~lGGDGT~L~aa~~~~-----~~~~Pilgin~G~lGFl~~~~~~~~~~~l~~i~~g~~ 121 (292)
T PRK03378 62 QQADLAI-VVGGDGNMLGAARVLA-----RYDIKVIGINRGNLGFLTDLDPDNALQQLSDVLEGHY 121 (292)
T ss_pred CCCCEEE-EECCcHHHHHHHHHhc-----CCCCeEEEEECCCCCcccccCHHHHHHHHHHHHcCCc
Confidence 3467544 5578899987765543 246788877764 4543 34444555544333
No 428
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=21.98 E-value=1.1e+02 Score=24.97 Aligned_cols=11 Identities=18% Similarity=0.214 Sum_probs=5.9
Q ss_pred HHhcCEEEEec
Q 028256 112 ARQADAFIALP 122 (211)
Q Consensus 112 ~~~sDa~Ivlp 122 (211)
+..||++++..
T Consensus 74 i~~adv~~I~V 84 (185)
T PF03721_consen 74 IKDADVVFICV 84 (185)
T ss_dssp HHH-SEEEE--
T ss_pred hhccceEEEec
Confidence 67899866653
No 429
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=21.97 E-value=1.2e+02 Score=27.56 Aligned_cols=35 Identities=29% Similarity=0.353 Sum_probs=26.9
Q ss_pred cCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeC
Q 028256 115 ADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 152 (211)
Q Consensus 115 sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~ 152 (211)
.|+|||+.| .-||+|....+.+.-- .+|||||.+.
T Consensus 106 ~~GiVVtHG-TDTme~tA~~Lsl~l~--~~kPVVlTGA 140 (349)
T TIGR00520 106 YDGIVITHG-TDTLEETAYFLDLTVK--SDKPVVIVGA 140 (349)
T ss_pred CCEEEEeCC-cccHHHHHHHHHHHcC--CCCCEEEECC
Confidence 578888775 7999999988875432 4899999843
No 430
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=21.96 E-value=5.3e+02 Score=22.36 Aligned_cols=69 Identities=14% Similarity=0.154 Sum_probs=41.7
Q ss_pred cCcceEEEEeCCCCCC---CHHHHHHHHHHHHHHHHcCCeEEecCCCCChhHHH--HHHHHhcCCeEEEEecCcCC
Q 028256 16 SRFKRVCVFCGSSPGK---SPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLV--SQAVYDGGRHVLGVIPKTLM 86 (211)
Q Consensus 16 ~~~~~I~Vfggs~~~~---~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~--a~gA~~~gG~viGv~P~~~~ 86 (211)
....-|.|.|++.... .++..+..+...+. +.....|+.|-|. +.=+++ ++.|.++|..-+-++|..+.
T Consensus 33 ~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~-~~~~~pvi~gv~~-~t~~~i~~a~~a~~~Gad~v~~~pP~y~ 106 (289)
T cd00951 33 YGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEE-TAGRVPVLAGAGY-GTATAIAYAQAAEKAGADGILLLPPYLT 106 (289)
T ss_pred cCCCEEEECcCCcCcccCCHHHHHHHHHHHHHH-hCCCCCEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 3456677776655442 34444444434443 3445778888775 665544 46677888888888776553
No 431
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=21.96 E-value=1.9e+02 Score=26.03 Aligned_cols=66 Identities=23% Similarity=0.299 Sum_probs=34.2
Q ss_pred EEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeC-----CccchhHHHHHHHHHH---cCCCCcccccceEEc--CCH
Q 028256 117 AFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV-----DGYYNSLLSFIDKAVD---EGFIAPAARYIIVSA--QTA 186 (211)
Q Consensus 117 a~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~-----~g~~~~l~~~l~~~~~---~g~i~~~~~~~i~~~--~d~ 186 (211)
|+|.|-||.|| .+|. ..|=.++.+ .-|++-..+++..+.+ ++. ......++++ ++-
T Consensus 2 a~vllaGG~GT-----------RLG~-~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~~~--~~~IPl~IMTS~~Th 67 (315)
T cd06424 2 VFVLVAGGLGE-----------RLGY-SGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKKGE--KMEIPFVIMTSDDTH 67 (315)
T ss_pred EEEEecCCCcc-----------ccCC-CCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhccC--CCceeEEEECCCchh
Confidence 78999999999 2343 334444433 2366666666554432 210 0111122222 445
Q ss_pred HHHHHHhhhh
Q 028256 187 HELICKLEVF 196 (211)
Q Consensus 187 ee~~~~l~~~ 196 (211)
++..+++++.
T Consensus 68 ~~T~~~fe~n 77 (315)
T cd06424 68 SKTLKLLEEN 77 (315)
T ss_pred HHHHHHHHHC
Confidence 6677777754
No 432
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=21.96 E-value=1.3e+02 Score=24.95 Aligned_cols=52 Identities=17% Similarity=0.092 Sum_probs=28.9
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEecCCCCChhHHHHHHHHhcCCeEEEE
Q 028256 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (211)
Q Consensus 19 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~a~gA~~~gG~viGv 80 (211)
+++-|.|+++ + ..+.+++.|+++|+.|+.-+ .....+ ..+...+.+.++..+
T Consensus 9 k~~lItGas~-g-------IG~aia~~l~~~G~~vv~~~-~~~~~~-~~~~~~~~~~~~~~~ 60 (251)
T PRK12481 9 KVAIITGCNT-G-------LGQGMAIGLAKAGADIVGVG-VAEAPE-TQAQVEALGRKFHFI 60 (251)
T ss_pred CEEEEeCCCc-h-------HHHHHHHHHHHCCCEEEEec-CchHHH-HHHHHHHcCCeEEEE
Confidence 4566665544 2 35678888899999987544 323322 222223345555444
No 433
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=21.94 E-value=1.6e+02 Score=24.41 Aligned_cols=30 Identities=17% Similarity=0.173 Sum_probs=20.7
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEe
Q 028256 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVY 55 (211)
Q Consensus 18 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~ 55 (211)
+++|.|+|+|+. ....+.+.|.++|+.|+.
T Consensus 17 ~~~ilItGasG~--------iG~~l~~~L~~~g~~V~~ 46 (251)
T PLN00141 17 TKTVFVAGATGR--------TGKRIVEQLLAKGFAVKA 46 (251)
T ss_pred CCeEEEECCCcH--------HHHHHHHHHHhCCCEEEE
Confidence 568888876552 345677777788888653
No 434
>PRK06696 uridine kinase; Validated
Probab=21.92 E-value=2.2e+02 Score=23.50 Aligned_cols=37 Identities=22% Similarity=0.224 Sum_probs=27.8
Q ss_pred hcCcceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEe
Q 028256 15 KSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVY 55 (211)
Q Consensus 15 ~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~ 55 (211)
..+...|+|-|+|..|.+ ..|.+|.+.|.+.|..++.
T Consensus 19 ~~~~~iI~I~G~sgsGKS----TlA~~L~~~l~~~g~~v~~ 55 (223)
T PRK06696 19 LTRPLRVAIDGITASGKT----TFADELAEEIKKRGRPVIR 55 (223)
T ss_pred CCCceEEEEECCCCCCHH----HHHHHHHHHHHHcCCeEEE
Confidence 345678999988888732 4578888888888887765
No 435
>PRK12743 oxidoreductase; Provisional
Probab=21.89 E-value=4.5e+02 Score=21.56 Aligned_cols=106 Identities=10% Similarity=0.022 Sum_probs=0.0
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeE-EecCCCCChhHHHHHHHHhcCCeEEEEecCcCCCCCCCCCCC
Q 028256 17 RFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDL-VYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTV 95 (211)
Q Consensus 17 ~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~l-v~GGg~~GlM~a~a~gA~~~gG~viGv~P~~~~~~e~~~~~~ 95 (211)
..++|-|.|+|+ -....+++.|+++|+.| +..-...---+.+.+.....|+.+..+ .-.+
T Consensus 1 ~~k~vlItGas~--------giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~Dl 61 (256)
T PRK12743 1 MAQVAIVTASDS--------GIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIR-----------QLDL 61 (256)
T ss_pred CCCEEEEECCCc--------hHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEE-----------EccC
Q ss_pred ceeeecCCHHHHHHHHHHhcCEEEEecCCcC-------cHHHHHHHHHHHHhC
Q 028256 96 GEVKAVSGMHQRKAEMARQADAFIALPGGYG-------TLEELLEVITWAQLG 141 (211)
Q Consensus 96 ~~~~~~~~~~~Rk~~m~~~sDa~IvlpGG~G-------TL~El~~~~~~~~lg 141 (211)
++.--.....++-..-...-|++|...|... +.+++...+..+..+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~ 114 (256)
T PRK12743 62 SDLPEGAQALDKLIQRLGRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDG 114 (256)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHH
No 436
>PRK10037 cell division protein; Provisional
Probab=21.84 E-value=1.9e+02 Score=24.24 Aligned_cols=33 Identities=12% Similarity=0.052 Sum_probs=22.6
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeE
Q 028256 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDL 53 (211)
Q Consensus 18 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~l 53 (211)
|+.|+|+ +..-|... ...|..|+..||++|+.+
T Consensus 1 ~~~iav~-n~KGGvGK--TT~a~nLA~~La~~G~rV 33 (250)
T PRK10037 1 MAILGLQ-GVRGGVGT--TSITAALAWSLQMLGENV 33 (250)
T ss_pred CcEEEEe-cCCCCccH--HHHHHHHHHHHHhcCCcE
Confidence 5677777 33334333 245889999999999865
No 437
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.
Probab=21.82 E-value=4.2e+02 Score=22.41 Aligned_cols=67 Identities=22% Similarity=0.227 Sum_probs=36.4
Q ss_pred ChhHHHHHHHHhcCCeEEEEecCcCCCCCCCCCCCceeeecCCHHHHHHHHHHhcCEEEEecCCcCc---HHHHHHHHHH
Q 028256 61 GLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGT---LEELLEVITW 137 (211)
Q Consensus 61 GlM~a~a~gA~~~gG~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~Rk~~m~~~sDa~IvlpGG~GT---L~El~~~~~~ 137 (211)
=-|.-++++++..||..+ +. +..+....+++.+|++++=+|- ++ .+.+..+..
T Consensus 18 ~~~~~~a~~~~~~g~~~~---~~-------------------~~~e~~~~~l~~~d~vvi~~G~-l~~~~~~~i~~~~~- 73 (242)
T cd01170 18 VVMNFVANVLLAIGASPI---MS-------------------DAPEEVEELAKIAGALVINIGT-LTSEQIEAMLKAGK- 73 (242)
T ss_pred hhHhHHHHHHHHhCCchh---hc-------------------CCHHHHHHHHHHcCcEEEeCCC-CChHHHHHHHHHHH-
Confidence 458888999999887633 11 1133344456788998884433 23 222222221
Q ss_pred HHhCCCCCcEEEEeCC
Q 028256 138 AQLGIHDKPVGLLNVD 153 (211)
Q Consensus 138 ~~lg~~~kPiill~~~ 153 (211)
....+++|++ +|..
T Consensus 74 -~~~~~~~pvV-lDp~ 87 (242)
T cd01170 74 -AANQLGKPVV-LDPV 87 (242)
T ss_pred -HHHhcCCCEE-Eccc
Confidence 1223567864 5765
No 438
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=21.82 E-value=67 Score=27.35 Aligned_cols=34 Identities=29% Similarity=0.249 Sum_probs=20.8
Q ss_pred EEEecCCcCcHHHHHHHHHHHHh----CCCCCcEEEEe
Q 028256 118 FIALPGGYGTLEELLEVITWAQL----GIHDKPVGLLN 151 (211)
Q Consensus 118 ~IvlpGG~GTL~El~~~~~~~~l----g~~~kPiill~ 151 (211)
.|++|||.|++..+...-.+.++ ...+|||..+=
T Consensus 99 av~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAIC 136 (232)
T cd03148 99 AVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLC 136 (232)
T ss_pred EEEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEEC
Confidence 67899999998754333222222 12578887663
No 439
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=21.74 E-value=2.8e+02 Score=25.05 Aligned_cols=13 Identities=31% Similarity=0.506 Sum_probs=10.8
Q ss_pred HhcCEEEEecCCc
Q 028256 113 RQADAFIALPGGY 125 (211)
Q Consensus 113 ~~sDa~IvlpGG~ 125 (211)
..+|++|.++||.
T Consensus 82 ~~~D~IiavGGGS 94 (380)
T cd08185 82 EGCDFVVGLGGGS 94 (380)
T ss_pred cCCCEEEEeCCcc
Confidence 3589999999984
No 440
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.71 E-value=2e+02 Score=23.68 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=21.3
Q ss_pred HHHHhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeC
Q 028256 110 EMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 152 (211)
Q Consensus 110 ~m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~ 152 (211)
+.....|++|+.+.....+.+....+. ..++|+++++.
T Consensus 51 ~~~~~~Dgiii~~~~~~~~~~~i~~~~-----~~~iPvV~~~~ 88 (282)
T cd06318 51 LLTRGVNVLIINPVDPEGLVPAVAAAK-----AAGVPVVVVDS 88 (282)
T ss_pred HHHcCCCEEEEecCCccchHHHHHHHH-----HCCCCEEEecC
Confidence 344557888887655443333332221 24678888864
No 441
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=21.66 E-value=1.8e+02 Score=22.68 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=25.0
Q ss_pred HHHHHHHcCCeEEecCCCCChhHHHHHHHHhcCCeEEEE
Q 028256 42 LGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (211)
Q Consensus 42 lG~~la~~g~~lv~GGg~~GlM~a~a~gA~~~gG~viGv 80 (211)
|.+.+.+++..|.+||| -++..-++..+..+|.+|-+
T Consensus 55 l~~l~~~~~~VIa~GGG--~~~~~~~~~~L~~~g~vI~L 91 (158)
T PF01202_consen 55 LRELLKENNCVIACGGG--IVLKEENRELLKENGLVIYL 91 (158)
T ss_dssp HHHHHCSSSEEEEE-TT--GGGSHHHHHHHHHHSEEEEE
T ss_pred HHHHhccCcEEEeCCCC--CcCcHHHHHHHHhCCEEEEE
Confidence 33333444778888886 46666677788888898887
No 442
>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated
Probab=21.60 E-value=5.7e+02 Score=23.20 Aligned_cols=53 Identities=9% Similarity=0.098 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHHHHHHH-cCCeEEec----CCCCChhHHHHHHHHhcCCeEEEEecCcCC
Q 028256 32 SPSYQLAAIQLGKQLVE-RNIDLVYG----GGSIGLMGLVSQAVYDGGRHVLGVIPKTLM 86 (211)
Q Consensus 32 ~~~~~~~A~~lG~~la~-~g~~lv~G----Gg~~GlM~a~a~gA~~~gG~viGv~P~~~~ 86 (211)
++...+.-++|++.+.+ .++.+.++ +.| -+.+++. ...+.|..-|-|+|-++.
T Consensus 18 dp~~~~~~~~La~~l~~~~~~~V~~aFLE~~eP-sl~eal~-~l~~~G~~~IvVvPlFL~ 75 (335)
T PRK05782 18 RETFNSDMEGMANYLKEKLGVPIYLTYNEFAEP-NWRSLLN-EIIKEGYRRVIIALAFLG 75 (335)
T ss_pred ChHHHHHHHHHHHHHHhccCCceEEEEeccCCC-CHHHHHH-HHHHCCCCEEEEeccccc
Confidence 56677777888888865 46666655 555 6666664 455667777888886553
No 443
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=21.59 E-value=2.3e+02 Score=25.05 Aligned_cols=31 Identities=29% Similarity=0.508 Sum_probs=22.4
Q ss_pred cCEEEEecCCcCcHHHHHHHHHHHHhCCCCCc-EEEE
Q 028256 115 ADAFIALPGGYGTLEELLEVITWAQLGIHDKP-VGLL 150 (211)
Q Consensus 115 sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kP-iill 150 (211)
..-.|+..||=||++|+...+. ..+.| +.++
T Consensus 58 ~~D~via~GGDGTv~evingl~-----~~~~~~Lgil 89 (301)
T COG1597 58 GYDTVIAAGGDGTVNEVANGLA-----GTDDPPLGIL 89 (301)
T ss_pred CCCEEEEecCcchHHHHHHHHh-----cCCCCceEEe
Confidence 3347777899999999998775 23455 6666
No 444
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=21.59 E-value=5.4e+02 Score=22.35 Aligned_cols=49 Identities=29% Similarity=0.335 Sum_probs=32.0
Q ss_pred ecCCHHHHHHHHHHhcCEEEEe---cCCcCc----HHHHHHHHHHHHhCCCCCcEEE
Q 028256 100 AVSGMHQRKAEMARQADAFIAL---PGGYGT----LEELLEVITWAQLGIHDKPVGL 149 (211)
Q Consensus 100 ~~~~~~~Rk~~m~~~sDa~Ivl---pGG~GT----L~El~~~~~~~~lg~~~kPiil 149 (211)
...+-.+|-..+.+.|+.||-+ +|=.|. .+++.+.+...+- ..+.||++
T Consensus 152 ~PtT~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~-~t~~Pi~v 207 (263)
T CHL00200 152 APTSSKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKK-MTNKPIIL 207 (263)
T ss_pred CCCCCHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHH-hcCCCEEE
Confidence 3455579999999999988877 665565 2444444433332 23678886
No 445
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=21.58 E-value=4.5e+02 Score=21.44 Aligned_cols=56 Identities=11% Similarity=0.062 Sum_probs=0.0
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEecCCCCChhHHHHHHHHhcCCeEEEE
Q 028256 17 RFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (211)
Q Consensus 17 ~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~a~gA~~~gG~viGv 80 (211)
..+++-|.|+|+ .....+++.|+++|+.++.-+-...-.....+...+.+..+..+
T Consensus 8 ~~k~~lItGas~--------giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~ 63 (254)
T PRK08085 8 AGKNILITGSAQ--------GIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAA 63 (254)
T ss_pred CCCEEEEECCCC--------hHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEE
No 446
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=21.53 E-value=3.6e+02 Score=24.58 Aligned_cols=74 Identities=14% Similarity=0.014 Sum_probs=44.5
Q ss_pred HHHHHHHHhcCEEEEec--CCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCCCcccccceEEc
Q 028256 106 QRKAEMARQADAFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSA 183 (211)
Q Consensus 106 ~Rk~~m~~~sDa~Ivlp--GG~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~ 183 (211)
+....++..||++|.-+ -++|- =++|+++ .++|++..+..|-..+++.- . ...... +. +
T Consensus 316 ~~l~~~l~~adv~v~~s~~E~Fgi--~~lEAMa------~G~pvIa~~~ggp~~~iv~~---~------~~g~~G-~l-~ 376 (419)
T cd03806 316 EELLEELSTASIGLHTMWNEHFGI--GVVEYMA------AGLIPLAHASGGPLLDIVVP---W------DGGPTG-FL-A 376 (419)
T ss_pred HHHHHHHHhCeEEEECCccCCccc--HHHHHHH------cCCcEEEEcCCCCchheeec---c------CCCCce-EE-e
Confidence 33445668899987643 56664 4577776 78999988876544333210 0 011111 22 4
Q ss_pred CCHHHHHHHhhhhcc
Q 028256 184 QTAHELICKLEVFFF 198 (211)
Q Consensus 184 ~d~ee~~~~l~~~~~ 198 (211)
+|++++.+.|.+...
T Consensus 377 ~d~~~la~ai~~ll~ 391 (419)
T cd03806 377 STAEEYAEAIEKILS 391 (419)
T ss_pred CCHHHHHHHHHHHHh
Confidence 699999888887653
No 447
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=21.53 E-value=2.1e+02 Score=23.51 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=18.3
Q ss_pred CCHHHHHHHHHHHHHHHHcCCeEEecC
Q 028256 31 KSPSYQLAAIQLGKQLVERNIDLVYGG 57 (211)
Q Consensus 31 ~~~~~~~~A~~lG~~la~~g~~lv~GG 57 (211)
.++-+.+..+.+-+.+.++|+.++...
T Consensus 10 ~~~~~~~~~~~~~~~a~~~g~~~~~~~ 36 (273)
T cd06309 10 ESPWRTAETKSIKDAAEKRGFDLKFAD 36 (273)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEeC
Confidence 356666677777777777777776543
No 448
>PRK14557 pyrH uridylate kinase; Provisional
Probab=21.52 E-value=1.4e+02 Score=25.71 Aligned_cols=41 Identities=22% Similarity=0.480 Sum_probs=22.0
Q ss_pred cceEEE-EeCCCCCCCH---HHHHHHHHHHHHHH---HcCC--eEEecCC
Q 028256 18 FKRVCV-FCGSSPGKSP---SYQLAAIQLGKQLV---ERNI--DLVYGGG 58 (211)
Q Consensus 18 ~~~I~V-fggs~~~~~~---~~~~~A~~lG~~la---~~g~--~lv~GGg 58 (211)
.++|.+ +||+....+. .-.+..+++++.|+ +.|+ .||.|||
T Consensus 4 ~~riViKlGG~al~~~~~~~~~~~~i~~~a~~i~~~~~~g~~vvVVvGgG 53 (247)
T PRK14557 4 YKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGG 53 (247)
T ss_pred ccEEEEEeCceeECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEECCc
Confidence 445555 7777764311 01134555666665 4565 5688886
No 449
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=21.50 E-value=4.8e+02 Score=21.74 Aligned_cols=67 Identities=21% Similarity=0.313 Sum_probs=38.7
Q ss_pred HHHHHHhcCEEEEec--CCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCCCcccccceEEcCC
Q 028256 108 KAEMARQADAFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQT 185 (211)
Q Consensus 108 k~~m~~~sDa~Ivlp--GG~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d 185 (211)
...+...||++|.-. .|+|. =++|+++ .++||+..+..++-+ +.. ....++..+|
T Consensus 266 ~~~~~~~~d~~l~ps~~e~~~~--~~~Ea~a------~G~pvI~~~~~~~~e-~~~--------------~~~~~~~~~~ 322 (365)
T cd03809 266 LAALYRGARAFVFPSLYEGFGL--PVLEAMA------CGTPVIASNISSLPE-VAG--------------DAALYFDPLD 322 (365)
T ss_pred HHHHHhhhhhhcccchhccCCC--CHHHHhc------CCCcEEecCCCCccc-eec--------------CceeeeCCCC
Confidence 344567788655331 22232 2566666 789999877643322 211 1223455678
Q ss_pred HHHHHHHhhhhc
Q 028256 186 AHELICKLEVFF 197 (211)
Q Consensus 186 ~ee~~~~l~~~~ 197 (211)
++++.+.|.+..
T Consensus 323 ~~~~~~~i~~l~ 334 (365)
T cd03809 323 PEALAAAIERLL 334 (365)
T ss_pred HHHHHHHHHHHh
Confidence 899888887753
No 450
>PRK09134 short chain dehydrogenase; Provisional
Probab=21.48 E-value=4.3e+02 Score=21.64 Aligned_cols=33 Identities=9% Similarity=0.017 Sum_probs=22.5
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEecC
Q 028256 17 RFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGG 57 (211)
Q Consensus 17 ~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GG 57 (211)
..++|.|.|+++. ...++.+.|+++|+.++.-.
T Consensus 8 ~~k~vlItGas~g--------iG~~la~~l~~~g~~v~~~~ 40 (258)
T PRK09134 8 APRAALVTGAARR--------IGRAIALDLAAHGFDVAVHY 40 (258)
T ss_pred CCCEEEEeCCCcH--------HHHHHHHHHHHCCCEEEEEe
Confidence 3456777765532 34678888899999986543
No 451
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=21.45 E-value=1.6e+02 Score=25.67 Aligned_cols=38 Identities=24% Similarity=0.476 Sum_probs=25.3
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEecCCC
Q 028256 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGS 59 (211)
Q Consensus 18 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~ 59 (211)
|++|.++++...+ +...+.+|++.|.++||.+..-+++
T Consensus 1 ~~~i~i~~~g~gG----~~~~~~~la~~L~~~g~ev~vv~~~ 38 (357)
T PRK00726 1 MKKILLAGGGTGG----HVFPALALAEELKKRGWEVLYLGTA 38 (357)
T ss_pred CcEEEEEcCcchH----hhhHHHHHHHHHHhCCCEEEEEECC
Confidence 4678888543322 3346779999999999987443333
No 452
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=21.39 E-value=74 Score=25.48 Aligned_cols=60 Identities=13% Similarity=0.205 Sum_probs=32.9
Q ss_pred hcCcceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEe--cCCC---CChhHHHHHHHHhcCCeEEE
Q 028256 15 KSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVY--GGGS---IGLMGLVSQAVYDGGRHVLG 79 (211)
Q Consensus 15 ~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~--GGg~---~GlM~a~a~gA~~~gG~viG 79 (211)
.++.++|.|+||+..- . -.+..++|.|+++|+.+.. -+-. .......-+-+.+.|+.++-
T Consensus 22 ~~~~~~v~il~G~GnN-G----gDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 86 (169)
T PF03853_consen 22 SPKGPRVLILCGPGNN-G----GDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKIIE 86 (169)
T ss_dssp CCTT-EEEEEE-SSHH-H----HHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEES
T ss_pred ccCCCeEEEEECCCCC-h----HHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEee
Confidence 3566889999987631 1 2355788999999998743 2111 12333333445556755443
No 453
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=21.37 E-value=5.4e+02 Score=22.26 Aligned_cols=67 Identities=22% Similarity=0.328 Sum_probs=40.9
Q ss_pred HHHHhcCEEEEe--cCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccchhHHHHHHHHHHcCCCCcccccceEEcCCHH
Q 028256 110 EMARQADAFIAL--PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAH 187 (211)
Q Consensus 110 ~m~~~sDa~Ivl--pGG~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~e 187 (211)
.++..||++|.. ..|+|. =+.|+++ .++||+.-+..|. .+++. ++ ....+.-.+|++
T Consensus 268 ~~~~~adi~v~pS~~Eg~~~--~~lEAma------~G~Pvv~s~~~g~-~e~i~-------~~-----~~g~~~~~~d~~ 326 (374)
T TIGR03088 268 ALMQALDLFVLPSLAEGISN--TILEAMA------SGLPVIATAVGGN-PELVQ-------HG-----VTGALVPPGDAV 326 (374)
T ss_pred HHHHhcCEEEeccccccCch--HHHHHHH------cCCCEEEcCCCCc-HHHhc-------CC-----CceEEeCCCCHH
Confidence 456889987743 244544 3677777 7999999877542 22221 11 122334457888
Q ss_pred HHHHHhhhhc
Q 028256 188 ELICKLEVFF 197 (211)
Q Consensus 188 e~~~~l~~~~ 197 (211)
++.+.|.++.
T Consensus 327 ~la~~i~~l~ 336 (374)
T TIGR03088 327 ALARALQPYV 336 (374)
T ss_pred HHHHHHHHHH
Confidence 8888887654
No 454
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=21.37 E-value=4.1e+02 Score=20.88 Aligned_cols=69 Identities=16% Similarity=0.189 Sum_probs=36.0
Q ss_pred HHHHHhhhhcCcceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeE-------------------EecCCCCChhHHHH
Q 028256 7 QQQAAAALKSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDL-------------------VYGGGSIGLMGLVS 67 (211)
Q Consensus 7 ~~~~~~~~~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~l-------------------v~GGg~~GlM~a~a 67 (211)
+.++......+-++|-+||.... + -.|..+...|.+-|..+ ++-.|..--+-.++
T Consensus 19 ~~~~~~~~l~~a~~I~i~G~G~S-----~-~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~Dv~I~iS~sG~t~~~i~~~ 92 (179)
T TIGR03127 19 ELDKLADKIIKAKRIFVAGAGRS-----G-LVGKAFAMRLMHLGFNVYVVGETTTPSIKKGDLLIAISGSGETESLVTVA 92 (179)
T ss_pred HHHHHHHHHHhCCEEEEEecCHH-----H-HHHHHHHHHHHhCCCeEEEeCCcccCCCCCCCEEEEEeCCCCcHHHHHHH
Confidence 34444444455678888864332 1 24566666666544333 22222223344455
Q ss_pred HHHHhcCCeEEEEe
Q 028256 68 QAVYDGGRHVLGVI 81 (211)
Q Consensus 68 ~gA~~~gG~viGv~ 81 (211)
+-|++.|.++|+|.
T Consensus 93 ~~ak~~g~~ii~IT 106 (179)
T TIGR03127 93 KKAKEIGATVAAIT 106 (179)
T ss_pred HHHHHCCCeEEEEE
Confidence 55666666766664
No 455
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=21.35 E-value=3.8e+02 Score=23.42 Aligned_cols=42 Identities=21% Similarity=0.272 Sum_probs=26.9
Q ss_pred HHHHHHhcCEEEEec--CCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCccch
Q 028256 108 KAEMARQADAFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYN 157 (211)
Q Consensus 108 k~~m~~~sDa~Ivlp--GG~GTL~El~~~~~~~~lg~~~kPiill~~~g~~~ 157 (211)
...+...||+||.-. -|+|- =+.|+++ .++||+..+..|..+
T Consensus 267 ~~~~~~~ad~~v~~s~~Eg~g~--~~lEA~a------~G~Pvv~s~~~~~~~ 310 (372)
T cd03792 267 VNALQRASTVVLQKSIREGFGL--TVTEALW------KGKPVIAGPVGGIPL 310 (372)
T ss_pred HHHHHHhCeEEEeCCCccCCCH--HHHHHHH------cCCCEEEcCCCCchh
Confidence 344678899886432 23442 3556666 789999987766543
No 456
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=21.27 E-value=2.4e+02 Score=21.59 Aligned_cols=33 Identities=15% Similarity=0.203 Sum_probs=23.5
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeE
Q 028256 20 RVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDL 53 (211)
Q Consensus 20 ~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~l 53 (211)
+++|.--+.+ .++.....|.++++.+++.|+.+
T Consensus 2 ~~~iv~~~~P-y~~~~~~~al~~A~aa~~~gh~v 34 (128)
T PRK00207 2 RYAIAVTGPA-YGTQQASSAYQFAQALLAEGHEL 34 (128)
T ss_pred EEEEEEcCCC-CCCHHHHHHHHHHHHHHhCCCCe
Confidence 4555544444 34556688999999999999874
No 457
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=21.26 E-value=7.6e+02 Score=23.91 Aligned_cols=137 Identities=18% Similarity=0.189 Sum_probs=76.0
Q ss_pred cceEEEEeCCCCCCCH----------------HHHHHHHHHHHHHHHcCCeEEecCCCCChhHHHHHHHHhcCCeEEEEe
Q 028256 18 FKRVCVFCGSSPGKSP----------------SYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVI 81 (211)
Q Consensus 18 ~~~I~Vfggs~~~~~~----------------~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~a~gA~~~gG~viGv~ 81 (211)
..+|+|++-.+....- .-.+.++..-+.|.++|+.+|-|++. +++-|.++|-..+=+.
T Consensus 107 ~~~iavv~~~~~~~~~~~~~~~l~~~i~~~~~~~~~e~~~~v~~lk~~G~~~vvG~~~------~~~~A~~~g~~g~~~~ 180 (538)
T PRK15424 107 TSSIGVVTYQETIPALVAFQKTFNLRIEQRSYVTEEDARGQINELKANGIEAVVGAGL------ITDLAEEAGMTGIFIY 180 (538)
T ss_pred CCcEEEEecCcccHHHHHHHHHhCCceEEEEecCHHHHHHHHHHHHHCCCCEEEcCch------HHHHHHHhCCceEEec
Confidence 4578888765544110 01235666778888899999999854 4566666665533331
Q ss_pred cC-cC-------------CCCC---------CCC-CCCceeeecCC--HH-HHHH-HHHHhcCEEEEecCCcCcHHHHHH
Q 028256 82 PK-TL-------------MPRE---------ITG-DTVGEVKAVSG--MH-QRKA-EMARQADAFIALPGGYGTLEELLE 133 (211)
Q Consensus 82 P~-~~-------------~~~e---------~~~-~~~~~~~~~~~--~~-~Rk~-~m~~~sDa~IvlpGG~GTL~El~~ 133 (211)
.. .+ ...+ ... ..+.++ +..+ |. .|.. .-+..+|.-|.+-|-.||==|++.
T Consensus 181 s~e~i~~a~~~A~~~~~~~~~~~~~~~~~~~~~~~~~f~~i-iG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A 259 (538)
T PRK15424 181 SAATVRQAFEDALDMTRMTLRHNTHYATRNALRTRYVLGDL-LGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAA 259 (538)
T ss_pred CHHHHHHHHHHHHHHHHHHhhhhhccchhhhhccccchhhe-eeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHH
Confidence 10 00 0000 000 011222 2222 21 2222 234568899999999999777765
Q ss_pred HHHHHH--------hCCCCCcEEEEeCCccchhHHH
Q 028256 134 VITWAQ--------LGIHDKPVGLLNVDGYYNSLLS 161 (211)
Q Consensus 134 ~~~~~~--------lg~~~kPiill~~~g~~~~l~~ 161 (211)
-.-... ......|.+.+|...+-+.+++
T Consensus 260 ~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~lle 295 (538)
T PRK15424 260 QAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLE 295 (538)
T ss_pred HHHHHhhcccccccCccCCCCeEEeecccCChhhHH
Confidence 443333 2235689999998776665544
No 458
>PRK09291 short chain dehydrogenase; Provisional
Probab=21.20 E-value=1.4e+02 Score=24.45 Aligned_cols=31 Identities=13% Similarity=0.193 Sum_probs=22.2
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEecC
Q 028256 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGG 57 (211)
Q Consensus 19 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GG 57 (211)
++|.|.|+++. ....+.+.|+++|+.++...
T Consensus 3 ~~vlVtGasg~--------iG~~ia~~l~~~G~~v~~~~ 33 (257)
T PRK09291 3 KTILITGAGSG--------FGREVALRLARKGHNVIAGV 33 (257)
T ss_pred CEEEEeCCCCH--------HHHHHHHHHHHCCCEEEEEe
Confidence 46788876552 34667888889999987654
No 459
>PRK07478 short chain dehydrogenase; Provisional
Probab=21.15 E-value=4.6e+02 Score=21.38 Aligned_cols=59 Identities=12% Similarity=0.070 Sum_probs=0.0
Q ss_pred CcceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEecCCCCChhHHHHHHHHhcCCeEEEEecC
Q 028256 17 RFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPK 83 (211)
Q Consensus 17 ~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~a~gA~~~gG~viGv~P~ 83 (211)
+.+++.|.|+|+ -...++++.|+++|+.|+.-+-...--+.+.+...+.++.+..+..+
T Consensus 5 ~~k~~lItGas~--------giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 63 (254)
T PRK07478 5 NGKVAIITGASS--------GIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGD 63 (254)
T ss_pred CCCEEEEeCCCC--------hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcC
No 460
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=21.15 E-value=4.6e+02 Score=21.39 Aligned_cols=57 Identities=12% Similarity=0.162 Sum_probs=0.0
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEecCCCCChhHHHHHHHHhcCCeEEEEecC
Q 028256 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPK 83 (211)
Q Consensus 19 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~a~gA~~~gG~viGv~P~ 83 (211)
++|.|.|+++ .....+++.|+++|+.|+.-+-..---++..+...+.|+++..+..+
T Consensus 11 k~vlItGa~g--------~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D 67 (255)
T PRK07523 11 RRALVTGSSQ--------GIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFD 67 (255)
T ss_pred CEEEEECCcc--------hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEcc
No 461
>KOG4321 consensus Predicted phosphate acyltransferases [Lipid transport and metabolism]
Probab=21.12 E-value=1.1e+02 Score=25.46 Aligned_cols=30 Identities=30% Similarity=0.430 Sum_probs=25.9
Q ss_pred HHHHHHHHHhcCEEEEecCCcCcHHHHHHH
Q 028256 105 HQRKAEMARQADAFIALPGGYGTLEELLEV 134 (211)
Q Consensus 105 ~~Rk~~m~~~sDa~IvlpGG~GTL~El~~~ 134 (211)
..|.+++...+|-|++---|.||.+|.|.+
T Consensus 68 lqrerliytigdrflfklpgwgtiseafhv 97 (279)
T KOG4321|consen 68 LQRERLIYTIGDRFLFKLPGWGTISEAFHV 97 (279)
T ss_pred HhhhhheEeecceeEEeCCCccchhhhhcc
Confidence 578888889999998887789999999864
No 462
>PRK08267 short chain dehydrogenase; Provisional
Probab=21.06 E-value=1.7e+02 Score=24.21 Aligned_cols=29 Identities=7% Similarity=-0.031 Sum_probs=0.0
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEE
Q 028256 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV 54 (211)
Q Consensus 18 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv 54 (211)
|++|.|.|+|+ -....+++.|+++|+.|+
T Consensus 1 mk~vlItGasg--------~iG~~la~~l~~~G~~V~ 29 (260)
T PRK08267 1 MKSIFITGAAS--------GIGRATALLFAAEGWRVG 29 (260)
T ss_pred CcEEEEeCCCc--------hHHHHHHHHHHHCCCeEE
No 463
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=21.02 E-value=3.9e+02 Score=23.09 Aligned_cols=17 Identities=6% Similarity=-0.058 Sum_probs=13.3
Q ss_pred EEcCCHHHHHHHhhhhc
Q 028256 181 VSAQTAHELICKLEVFF 197 (211)
Q Consensus 181 ~~~~d~ee~~~~l~~~~ 197 (211)
..++|.+|+++++++..
T Consensus 239 ~~~~~~~el~~~l~~~~ 255 (256)
T TIGR00715 239 AIFDDISQLNQFVARLL 255 (256)
T ss_pred ccCCCHHHHHHHHHHhc
Confidence 45789999999988754
No 464
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=20.98 E-value=2.3e+02 Score=21.65 Aligned_cols=42 Identities=21% Similarity=0.170 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEecCCCCChhHHHHHHHHhcCCe
Q 028256 33 PSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRH 76 (211)
Q Consensus 33 ~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~a~gA~~~gG~ 76 (211)
+...+.|+.+.+.+.+.|-..++|-|. -.-.+..-+.+.++.
T Consensus 19 ~~i~~aa~~i~~~~~~gg~i~~~G~G~--S~~~a~~~~~~~~~~ 60 (138)
T PF13580_consen 19 EAIEKAADLIAEALRNGGRIFVCGNGH--SAAIASHFAADLGGL 60 (138)
T ss_dssp HHHHHHHHHHHHHHHTT--EEEEESTH--HHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCch--hhhHHHHHHHHHhcC
Confidence 456677778888887788888888764 333345556666543
No 465
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=20.91 E-value=1.4e+02 Score=24.16 Aligned_cols=31 Identities=13% Similarity=0.188 Sum_probs=18.3
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEecC
Q 028256 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGG 57 (211)
Q Consensus 19 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GG 57 (211)
+++.|.|+++. ....+++.|+++|+.++.-.
T Consensus 6 ~~~lItG~~g~--------iG~~~a~~l~~~G~~vi~~~ 36 (253)
T PRK08217 6 KVIVITGGAQG--------LGRAMAEYLAQKGAKLALID 36 (253)
T ss_pred CEEEEECCCch--------HHHHHHHHHHHCCCEEEEEe
Confidence 35666655432 23557777777888765443
No 466
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=20.89 E-value=1.4e+02 Score=23.10 Aligned_cols=28 Identities=14% Similarity=0.267 Sum_probs=21.3
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEE
Q 028256 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV 54 (211)
Q Consensus 18 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv 54 (211)
..+|+|+|..+.+ ..||+.|.+.||.|+
T Consensus 10 ~l~I~iIGaGrVG---------~~La~aL~~ag~~v~ 37 (127)
T PF10727_consen 10 RLKIGIIGAGRVG---------TALARALARAGHEVV 37 (127)
T ss_dssp --EEEEECTSCCC---------CHHHHHHHHTTSEEE
T ss_pred ccEEEEECCCHHH---------HHHHHHHHHCCCeEE
Confidence 3589999776664 469999999999875
No 467
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=20.87 E-value=95 Score=30.37 Aligned_cols=36 Identities=17% Similarity=0.306 Sum_probs=28.5
Q ss_pred cCcceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEE
Q 028256 16 SRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV 54 (211)
Q Consensus 16 ~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv 54 (211)
..++.|.|+.||..|+.+ ..|+++++.+.+.|+.+.
T Consensus 59 ~~~~~v~IlygSqTGnae---~lA~~la~~l~~~g~~~~ 94 (600)
T PRK10953 59 AEMPGITLISASQTGNAR---RVAEQLRDDLLAAKLNVN 94 (600)
T ss_pred CCCCeEEEEEEcCchHHH---HHHHHHHHHHHhCCCCcE
Confidence 346789999999998654 458899999988888754
No 468
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=20.81 E-value=1.9e+02 Score=23.98 Aligned_cols=36 Identities=28% Similarity=0.183 Sum_probs=19.9
Q ss_pred HHHHhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEe
Q 028256 110 EMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLN 151 (211)
Q Consensus 110 ~m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~ 151 (211)
++-...|++|+.|......+++.++. ..+.|+++++
T Consensus 53 ~~~~~vdgiI~~~~~~~~~~~~~~~~------~~giPvV~~~ 88 (268)
T cd06306 53 CAAWGADAILLGAVSPDGLNEILQQV------AASIPVIALV 88 (268)
T ss_pred HHHcCCCEEEEcCCChhhHHHHHHHH------HCCCCEEEec
Confidence 34457899988875422222222221 2567888775
No 469
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=20.76 E-value=1.7e+02 Score=25.13 Aligned_cols=30 Identities=17% Similarity=0.393 Sum_probs=21.0
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeE
Q 028256 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDL 53 (211)
Q Consensus 19 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~l 53 (211)
++|.|+||+..--.+- .-++|.|.++|+.+
T Consensus 61 ~~V~VlcG~GNNGGDG-----lv~AR~L~~~G~~V 90 (246)
T PLN03050 61 PRVLLVCGPGNNGGDG-----LVAARHLAHFGYEV 90 (246)
T ss_pred CeEEEEECCCCCchhH-----HHHHHHHHHCCCeE
Confidence 5799999876432333 35778888888866
No 470
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=20.73 E-value=2.4e+02 Score=25.95 Aligned_cols=52 Identities=19% Similarity=0.307 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCeEEecCCC---CChhHHHHHHHHhcCC-eEEEEe
Q 028256 30 GKSPSYQLAAIQLGKQLVERNIDLVYGGGS---IGLMGLVSQAVYDGGR-HVLGVI 81 (211)
Q Consensus 30 ~~~~~~~~~A~~lG~~la~~g~~lv~GGg~---~GlM~a~a~gA~~~gG-~viGv~ 81 (211)
+-++.+.+.-+.+-..++++|+.||+++|- .|+.+++.+-|.+.|= .-|+++
T Consensus 51 gY~~~~~~~L~~~L~~~~~~gIkvI~NaGg~np~~~a~~v~eia~e~Gl~lkvA~V 106 (362)
T PF07287_consen 51 GYAPDFVRDLRPLLPAAAEKGIKVITNAGGLNPAGCADIVREIARELGLSLKVAVV 106 (362)
T ss_pred CchHHHHHHHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHHHHHhcCCCeeEEEE
Confidence 346677777788888899999999998863 2334444555555553 335554
No 471
>PRK09072 short chain dehydrogenase; Provisional
Probab=20.73 E-value=1.4e+02 Score=24.67 Aligned_cols=31 Identities=23% Similarity=0.140 Sum_probs=19.5
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEec
Q 028256 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYG 56 (211)
Q Consensus 18 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~G 56 (211)
.++|.|.|+|+. ...++.+.|+++|+.|+.-
T Consensus 5 ~~~vlItG~s~~--------iG~~ia~~l~~~G~~V~~~ 35 (263)
T PRK09072 5 DKRVLLTGASGG--------IGQALAEALAAAGARLLLV 35 (263)
T ss_pred CCEEEEECCCch--------HHHHHHHHHHHCCCEEEEE
Confidence 356777765542 2456777777888876543
No 472
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=20.70 E-value=3.7e+02 Score=21.62 Aligned_cols=18 Identities=17% Similarity=0.143 Sum_probs=8.2
Q ss_pred hHHHHHHHHhcCCeEEEE
Q 028256 63 MGLVSQAVYDGGRHVLGV 80 (211)
Q Consensus 63 M~a~a~gA~~~gG~viGv 80 (211)
.-|++..+.+.|-.|.-+
T Consensus 64 a~ai~~~~~~~g~~v~f~ 81 (178)
T PF01695_consen 64 AVAIANEAIRKGYSVLFI 81 (178)
T ss_dssp HHHHHHHHHHTT--EEEE
T ss_pred HHHHHHHhccCCcceeEe
Confidence 344455555555454444
No 473
>PRK05723 flavodoxin; Provisional
Probab=20.68 E-value=2.6e+02 Score=21.98 Aligned_cols=21 Identities=10% Similarity=0.088 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHcCCeE
Q 028256 33 PSYQLAAIQLGKQLVERNIDL 53 (211)
Q Consensus 33 ~~~~~~A~~lG~~la~~g~~l 53 (211)
+.|...+++|=+.|++.|-+-
T Consensus 99 ~~Fc~a~~~ld~~L~~lGA~r 119 (151)
T PRK05723 99 DTFCGGGEQMRELFAELGVRE 119 (151)
T ss_pred HHHhHHHHHHHHHHHHCCCcE
Confidence 344555555555555444433
No 474
>PRK08589 short chain dehydrogenase; Validated
Probab=20.60 E-value=1.4e+02 Score=25.08 Aligned_cols=53 Identities=9% Similarity=0.032 Sum_probs=30.3
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEecCCCCChhHHHHHHHHhcCCeEEEE
Q 028256 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (211)
Q Consensus 19 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~a~gA~~~gG~viGv 80 (211)
+++-|.|+++ + ..+++++.|+++|+.|+.-+-. .--+...+...+.++++..+
T Consensus 7 k~vlItGas~-g-------IG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~ 59 (272)
T PRK08589 7 KVAVITGAST-G-------IGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNGGKAKAY 59 (272)
T ss_pred CEEEEECCCc-h-------HHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcCCeEEEE
Confidence 4666666544 2 3567888889999998766532 11122223233445665555
No 475
>PRK07062 short chain dehydrogenase; Provisional
Probab=20.58 E-value=1.4e+02 Score=24.71 Aligned_cols=31 Identities=26% Similarity=0.320 Sum_probs=20.6
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEecC
Q 028256 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGG 57 (211)
Q Consensus 19 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GG 57 (211)
+.+.|.|+|+ + ..+++++.|+++|+.|+.-+
T Consensus 9 k~~lItGas~-g-------iG~~ia~~l~~~G~~V~~~~ 39 (265)
T PRK07062 9 RVAVVTGGSS-G-------IGLATVELLLEAGASVAICG 39 (265)
T ss_pred CEEEEeCCCc-h-------HHHHHHHHHHHCCCeEEEEe
Confidence 4566666544 2 24568888888999876544
No 476
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=20.54 E-value=5.3e+02 Score=22.47 Aligned_cols=55 Identities=24% Similarity=0.356 Sum_probs=35.0
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC-------eEEecCCCCChhHHHHHHHHhcCCeEEEE
Q 028256 20 RVCVFCGSSPGKSPSYQLAAIQLGKQLVERNI-------DLVYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (211)
Q Consensus 20 ~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~-------~lv~GGg~~GlM~a~a~gA~~~gG~viGv 80 (211)
+..++. +. ++.-.+.+.+|-+.+...++ .++.|| . |.|=-+++-+...+-.++||
T Consensus 2 ~~~i~~--~~--~~~s~~~~~~l~~~~~~~~~~~~~~D~vi~iGG-D-GT~L~a~~~~~~~~iPilGI 63 (259)
T PRK00561 2 KYKIFA--ST--TPQTEPVLPKLKKVLKKKLAVEDGADYLFVLGG-D-GFFVSTAANYNCAGCKVVGI 63 (259)
T ss_pred EEEEEe--CC--CHHHHHHHHHHHHHHhhCCCccCCCCEEEEECC-c-HHHHHHHHHhcCCCCcEEEE
Confidence 466662 32 34455667777777765555 445555 5 88776666666677788887
No 477
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=20.51 E-value=2e+02 Score=24.36 Aligned_cols=83 Identities=22% Similarity=0.304 Sum_probs=39.1
Q ss_pred CCeEEecCCCCChhHHHHHHHHhcCCe-EEEEecCcCCCCCCCC-CCCceeeecCCHHHHHHHHH--HhcCEEEEecCCc
Q 028256 50 NIDLVYGGGSIGLMGLVSQAVYDGGRH-VLGVIPKTLMPREITG-DTVGEVKAVSGMHQRKAEMA--RQADAFIALPGGY 125 (211)
Q Consensus 50 g~~lv~GGg~~GlM~a~a~gA~~~gG~-viGv~P~~~~~~e~~~-~~~~~~~~~~~~~~Rk~~m~--~~sDa~IvlpGG~ 125 (211)
...+|+|+|+.|++ ++.-|+..|.. ++.+-.... ..+... -..+.++......+.-..+. ...|.+|=..|+.
T Consensus 122 ~~VlV~G~G~vG~~--~~~~ak~~G~~~Vi~~~~~~~-r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~ 198 (280)
T TIGR03366 122 RRVLVVGAGMLGLT--AAAAAAAAGAARVVAADPSPD-RRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGAT 198 (280)
T ss_pred CEEEEECCCHHHHH--HHHHHHHcCCCEEEEECCCHH-HHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCCh
Confidence 35678877655544 34556677776 666622110 001100 01122222222111111111 1368888777777
Q ss_pred CcHHHHHHHH
Q 028256 126 GTLEELLEVI 135 (211)
Q Consensus 126 GTL~El~~~~ 135 (211)
.++++.+..+
T Consensus 199 ~~~~~~~~~l 208 (280)
T TIGR03366 199 AAVRACLESL 208 (280)
T ss_pred HHHHHHHHHh
Confidence 7777776655
No 478
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=20.46 E-value=1.3e+02 Score=27.04 Aligned_cols=30 Identities=20% Similarity=0.076 Sum_probs=22.9
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 028256 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVE 48 (211)
Q Consensus 19 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~ 48 (211)
|+|+|||||=.+..--+...|++..+.+.-
T Consensus 1 m~i~i~gGsFdP~H~GHl~la~~a~~~~~~ 30 (342)
T PRK07152 1 MKIAIFGGSFDPIHKGHINIAKKAIKKLKL 30 (342)
T ss_pred CeEEEEeeCCCCcCHHHHHHHHHHHHHhCC
Confidence 369999999888777777777776666543
No 479
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=20.46 E-value=59 Score=30.19 Aligned_cols=26 Identities=35% Similarity=0.655 Sum_probs=15.0
Q ss_pred eEEecCCCCChhHHHHHHHHhcCCeEEE
Q 028256 52 DLVYGGGSIGLMGLVSQAVYDGGRHVLG 79 (211)
Q Consensus 52 ~lv~GGg~~GlM~a~a~gA~~~gG~viG 79 (211)
.+|-|||+.|+|-|..- .+.|-+|+=
T Consensus 3 viIIGgGaAGl~aA~~a--a~~g~~V~v 28 (409)
T PF03486_consen 3 VIIIGGGAAGLMAAITA--AEKGARVLV 28 (409)
T ss_dssp EEEE--SHHHHHHHHHH--HHTT--EEE
T ss_pred EEEECCCHHHHHHHHHH--HhCCCCEEE
Confidence 36789999999988765 344444443
No 480
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=20.46 E-value=1.7e+02 Score=26.64 Aligned_cols=37 Identities=11% Similarity=0.024 Sum_probs=28.5
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHHHHHH-HHcCCeEEe
Q 028256 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQL-VERNIDLVY 55 (211)
Q Consensus 19 ~~I~Vfggs~~~~~~~~~~~A~~lG~~l-a~~g~~lv~ 55 (211)
++|+|.+|..+...+.=...|..+.+.| -+.+|.++.
T Consensus 3 ~~v~vl~GG~S~EhevSl~Sa~~v~~~l~~~~~~~v~~ 40 (364)
T PRK14570 3 KNLMLIFGGVSFEHEISLRSAYGIYSALLKLDKYNIYS 40 (364)
T ss_pred cEEEEEECCCCcchhhhHHhHHHHHHHhccccCceEEE
Confidence 4788887777666666678899999999 577888753
No 481
>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati
Probab=20.45 E-value=2.4e+02 Score=23.64 Aligned_cols=34 Identities=21% Similarity=0.257 Sum_probs=17.4
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCe--EEecCC
Q 028256 24 FCGSSPGKSPSYQLAAIQLGKQLVERNID--LVYGGG 58 (211)
Q Consensus 24 fggs~~~~~~~~~~~A~~lG~~la~~g~~--lv~GGg 58 (211)
||||...+.+.....++++.+. .+.|+. ||.|||
T Consensus 6 ~GGs~l~~~~~~~~~~~~i~~l-~~~g~~~viV~sg~ 41 (239)
T cd04246 6 FGGTSVADIERIKRVAERIKKA-VKKGYQVVVVVSAM 41 (239)
T ss_pred ECccccCCHHHHHHHHHHHHHH-HHcCCCEEEEECCC
Confidence 7777765333444445444432 334553 566653
No 482
>PRK06849 hypothetical protein; Provisional
Probab=20.39 E-value=1.5e+02 Score=26.66 Aligned_cols=35 Identities=17% Similarity=0.283 Sum_probs=25.0
Q ss_pred cCcceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEecCC
Q 028256 16 SRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGG 58 (211)
Q Consensus 16 ~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg 58 (211)
+.+++|-|.|++.. .+..++|.|.+.|+.++....
T Consensus 2 ~~~~~VLI~G~~~~--------~~l~iar~l~~~G~~Vi~~d~ 36 (389)
T PRK06849 2 NTKKTVLITGARAP--------AALELARLFHNAGHTVILADS 36 (389)
T ss_pred CCCCEEEEeCCCcH--------HHHHHHHHHHHCCCEEEEEeC
Confidence 34678999965442 356788888889999876543
No 483
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=20.38 E-value=6e+02 Score=22.37 Aligned_cols=68 Identities=12% Similarity=0.120 Sum_probs=41.8
Q ss_pred cceEEEEeCCCCCC--CHHHHHHHHHHHHHHHHcCCeEEecCCCCChhHHH--HHHHHhcCCeEEEEecCcC
Q 028256 18 FKRVCVFCGSSPGK--SPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLV--SQAVYDGGRHVLGVIPKTL 85 (211)
Q Consensus 18 ~~~I~Vfggs~~~~--~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~--a~gA~~~gG~viGv~P~~~ 85 (211)
...|.|.|++.... +.+-+++..+.....+.....|+.|-|....=+++ ++.|.+.|..-+=++|..+
T Consensus 39 v~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~PyY 110 (299)
T COG0329 39 VDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPPYY 110 (299)
T ss_pred CCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 34566665554432 22333444456666666667788888877776666 5557778877666666554
No 484
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=20.37 E-value=2.1e+02 Score=24.90 Aligned_cols=34 Identities=18% Similarity=0.330 Sum_probs=23.8
Q ss_pred cCcceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeE
Q 028256 16 SRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDL 53 (211)
Q Consensus 16 ~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~l 53 (211)
++|+.|+|+ | .-|... ...+..|+..||+.|+.+
T Consensus 2 ~~~~~iai~-~-KGGvGK--Tt~~~nLa~~la~~g~kV 35 (295)
T PRK13234 2 SKLRQIAFY-G-KGGIGK--STTSQNTLAALVEMGQKI 35 (295)
T ss_pred CcceEEEEE-C-CCCccH--HHHHHHHHHHHHHCCCeE
Confidence 467889997 3 223232 245788999999999876
No 485
>PRK08303 short chain dehydrogenase; Provisional
Probab=20.35 E-value=1.4e+02 Score=26.09 Aligned_cols=31 Identities=19% Similarity=0.162 Sum_probs=20.5
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEecC
Q 028256 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGG 57 (211)
Q Consensus 19 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GG 57 (211)
+.+.|.|+|+ + ...++++.|++.|+.|+.-+
T Consensus 9 k~~lITGgs~-G-------IG~aia~~la~~G~~Vv~~~ 39 (305)
T PRK08303 9 KVALVAGATR-G-------AGRGIAVELGAAGATVYVTG 39 (305)
T ss_pred CEEEEeCCCc-h-------HHHHHHHHHHHCCCEEEEEe
Confidence 4666665544 3 24567788888999877644
No 486
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=20.35 E-value=4.6e+02 Score=22.85 Aligned_cols=57 Identities=16% Similarity=0.216 Sum_probs=0.0
Q ss_pred hhcCcceEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEecCCCCChhHHHHHHHHhcC-CeEEEE
Q 028256 14 LKSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGG-RHVLGV 80 (211)
Q Consensus 14 ~~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~a~gA~~~g-G~viGv 80 (211)
+.+...+|+++-|++.+ ..++.++.|++.|+.||-.|-+ .+.+..-|.+-+ +.++-+
T Consensus 1 m~~~~~kv~lITGASSG-------iG~A~A~~l~~~G~~vvl~aRR---~drL~~la~~~~~~~~~~~ 58 (246)
T COG4221 1 MTTLKGKVALITGASSG-------IGEATARALAEAGAKVVLAARR---EERLEALADEIGAGAALAL 58 (246)
T ss_pred CCCCCCcEEEEecCcch-------HHHHHHHHHHHCCCeEEEEecc---HHHHHHHHHhhccCceEEE
No 487
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=20.26 E-value=7.4e+02 Score=23.39 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=16.3
Q ss_pred HHHHHHHHHHcCCeEEecC
Q 028256 39 AIQLGKQLVERNIDLVYGG 57 (211)
Q Consensus 39 A~~lG~~la~~g~~lv~GG 57 (211)
+..|.+.|.+.|..-|+|-
T Consensus 2 ~~~l~~~L~~~Gv~~vFg~ 20 (539)
T TIGR02418 2 ADLVVDQLENQGVRYVFGI 20 (539)
T ss_pred HHHHHHHHHHcCCCEEEEC
Confidence 4568899999999999996
No 488
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=20.24 E-value=2.4e+02 Score=21.63 Aligned_cols=44 Identities=25% Similarity=0.193 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHhCCCCCcEEEEeCCc
Q 028256 105 HQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDG 154 (211)
Q Consensus 105 ~~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~lg~~~kPiill~~~g 154 (211)
.+....+.+.||++|..+..-+.-.=++|++. .++|++..+..+
T Consensus 172 ~~~~~~~~~~~di~l~~~~~e~~~~~~~Eam~------~g~pvi~s~~~~ 215 (229)
T cd01635 172 EELLALLLAAADVFVLPSLREGFGLVVLEAMA------CGLPVIATDVGG 215 (229)
T ss_pred HHHHHHHhhcCCEEEecccccCcChHHHHHHh------CCCCEEEcCCCC
Confidence 44455566779988876543222234666666 799999877643
No 489
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=20.20 E-value=71 Score=29.74 Aligned_cols=43 Identities=23% Similarity=0.380 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHcCCeEEecCCC----------CChhHHHHHHHHhcCCeEEE
Q 028256 37 LAAIQLGKQLVERNIDLVYGGGS----------IGLMGLVSQAVYDGGRHVLG 79 (211)
Q Consensus 37 ~~A~~lG~~la~~g~~lv~GGg~----------~GlM~a~a~gA~~~gG~viG 79 (211)
+-|+.|++.|.++|+.|++||-. .|+-+..+..+++.-|.++-
T Consensus 307 ~NAk~La~~L~~~G~~v~~ggTd~H~vlvd~~~~~~~g~~a~~~Le~~gI~vn 359 (399)
T PF00464_consen 307 KNAKALAEALQERGFKVVTGGTDNHQVLVDLRSFGIDGKEAEKALEEAGIIVN 359 (399)
T ss_dssp HHHHHHHHHHHHTT-EEGGGS-SSSEEEEEGGGGTS-HHHHHHHHHHTTEE-E
T ss_pred HHHHHHHHHHhhCCcEEEECCCCCCeEEEEecccccchHHHHHHHHhcCeeec
Confidence 34667788888899999987632 25555666666666555553
No 490
>PRK08589 short chain dehydrogenase; Validated
Probab=20.19 E-value=5.2e+02 Score=21.57 Aligned_cols=29 Identities=24% Similarity=0.391 Sum_probs=21.7
Q ss_pred CeEEecCCCCChhHHHHHHHHhcCCeEEEE
Q 028256 51 IDLVYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (211)
Q Consensus 51 ~~lv~GGg~~GlM~a~a~gA~~~gG~viGv 80 (211)
..||+||+. |+=.++++...+.|-.++.+
T Consensus 8 ~vlItGas~-gIG~aia~~l~~~G~~vi~~ 36 (272)
T PRK08589 8 VAVITGAST-GIGQASAIALAQEGAYVLAV 36 (272)
T ss_pred EEEEECCCc-hHHHHHHHHHHHCCCEEEEE
Confidence 567788765 88777888777777777766
No 491
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=20.17 E-value=5.7e+02 Score=22.03 Aligned_cols=69 Identities=10% Similarity=0.056 Sum_probs=43.1
Q ss_pred cCcceEEEEeCCCCCC---CHHHHHHHHHHHHHHHHcCCeEEecCCCCChhHHH--HHHHHhcCCeEEEEecCcC
Q 028256 16 SRFKRVCVFCGSSPGK---SPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLV--SQAVYDGGRHVLGVIPKTL 85 (211)
Q Consensus 16 ~~~~~I~Vfggs~~~~---~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~--a~gA~~~gG~viGv~P~~~ 85 (211)
....-|.|.|++.... .++..+..+.+.+ -+.....|+.|-|...+-+++ ++.|.++|...+-++|..+
T Consensus 34 ~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~-~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP~~ 107 (292)
T PRK03170 34 NGTDGLVVVGTTGESPTLTHEEHEELIRAVVE-AVNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTPYY 107 (292)
T ss_pred cCCCEEEECCcCCccccCCHHHHHHHHHHHHH-HhCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCCcC
Confidence 4456677776655442 3455444443333 344457888887765665554 5778889988888877654
No 492
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=20.16 E-value=3.4e+02 Score=20.29 Aligned_cols=63 Identities=19% Similarity=0.204 Sum_probs=40.7
Q ss_pred cHHHHHHHHHHHHhCC--CCCcEEEEeCCccchhHHHHHHHHHHcCCCCcccccceEEcCC--HHHHHHHhh
Q 028256 127 TLEELLEVITWAQLGI--HDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQT--AHELICKLE 194 (211)
Q Consensus 127 TL~El~~~~~~~~lg~--~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d--~ee~~~~l~ 194 (211)
+++-+..++...+... .-+-+.++|..-+++.++..+.. |++++..+.+.+.++ .+++.+++.
T Consensus 79 ~~~~lk~~~~~~~~~yp~~l~~i~ivn~p~~~~~~~~~~~~-----~l~~~~~~ki~~~~~~~~~~L~~~i~ 145 (158)
T smart00516 79 DLSVLRKILKILQDHYPERLGKVLIINPPWFFRVLWKIIKP-----FLDEKTREKIRFVGNDSKEELLEYID 145 (158)
T ss_pred cHHHHHHHHHHHHHHhHHHhCeEEEECCCHHHHHHHHHHHh-----hcChhhhccEEEeCCCCHHHHHhhCC
Confidence 3555554444444432 34788899998666666665443 566777777888887 777777764
No 493
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=20.09 E-value=1.2e+02 Score=20.94 Aligned_cols=20 Identities=25% Similarity=0.301 Sum_probs=15.2
Q ss_pred ceEEcCCHHHHHHHhhhhcc
Q 028256 179 IIVSAQTAHELICKLEVFFF 198 (211)
Q Consensus 179 ~i~~~~d~ee~~~~l~~~~~ 198 (211)
.+++++|++|+.+.+..+..
T Consensus 42 ~~~~~~~~~el~~~i~~ll~ 61 (92)
T PF13524_consen 42 HIITYNDPEELAEKIEYLLE 61 (92)
T ss_pred eEEEECCHHHHHHHHHHHHC
Confidence 35666799999999887653
No 494
>TIGR02076 pyrH_arch uridylate kinase, putative. This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP.
Probab=20.09 E-value=1.3e+02 Score=24.98 Aligned_cols=43 Identities=16% Similarity=0.241 Sum_probs=21.7
Q ss_pred HHHhcCEEEEecCCc--CcHHHHHHHHHHHHhCCCCCcEE-EEeCCccch
Q 028256 111 MARQADAFIALPGGY--GTLEELLEVITWAQLGIHDKPVG-LLNVDGYYN 157 (211)
Q Consensus 111 m~~~sDa~IvlpGG~--GTL~El~~~~~~~~lg~~~kPii-ll~~~g~~~ 157 (211)
++...+ +++++|-. -|-|.++..++ ..+ ...-++ +-+.+|.|+
T Consensus 99 ~l~~g~-ipv~~G~~~~~s~D~~A~~lA-~~l--~A~~li~ltdVdGvy~ 144 (221)
T TIGR02076 99 AMSLGK-IVVMGGTHPGHTTDAVAALLA-EFS--KADLLINATNVDGVYD 144 (221)
T ss_pred HHHcCC-EEEEcCCCCCCCcHHHHHHHH-HHc--CCCEEEEEeCCCcccC
Confidence 344455 45555531 14466665444 222 223344 458888885
No 495
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=20.07 E-value=62 Score=23.62 Aligned_cols=52 Identities=10% Similarity=0.057 Sum_probs=25.2
Q ss_pred HHHHHhcCCeEEEEecCcCCCCCCC--------CCCCceeeecCCHHHHHHHHHHhcCEEEE
Q 028256 67 SQAVYDGGRHVLGVIPKTLMPREIT--------GDTVGEVKAVSGMHQRKAEMARQADAFIA 120 (211)
Q Consensus 67 a~gA~~~gG~viGv~P~~~~~~e~~--------~~~~~~~~~~~~~~~Rk~~m~~~sDa~Iv 120 (211)
.-|+.++||..+=..|+...-.... .+++. .+...|-.|-...+.++..+++
T Consensus 31 ~~gtv~gGGllill~p~~~~w~~~~d~~~~~~~~~~~~--~~~~~F~~rf~~~L~~~~~i~i 90 (92)
T PF08351_consen 31 LAGTVRGGGLLILLLPPWESWPQLPDPFSRRLSVPPYT--DVTPRFIRRFIRSLQSDPGIII 90 (92)
T ss_dssp HHTTB-TT-EEEEEES-GGGTTTS-BGGGHHCC--SS---B--HHHHHHHHHHHCCSTTS--
T ss_pred HhcceecCeEEEEEcCCHHHhhhcchHHHhccccCCCC--cccHHHHHHHHHHHHHCcCCcc
Confidence 3456778999998888643211111 11111 3445577887777777766554
No 496
>PRK07308 flavodoxin; Validated
Probab=20.03 E-value=2.1e+02 Score=21.88 Aligned_cols=58 Identities=12% Similarity=0.094 Sum_probs=25.2
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHH---cC-CeEEecCCC------CChhHHHHHHHHhcCCeEEE
Q 028256 21 VCVFCGSSPGKSPSYQLAAIQLGKQLVE---RN-IDLVYGGGS------IGLMGLVSQAVYDGGRHVLG 79 (211)
Q Consensus 21 I~Vfggs~~~~~~~~~~~A~~lG~~la~---~g-~~lv~GGg~------~GlM~a~a~gA~~~gG~viG 79 (211)
..|+|++..+.. .+-+.+..+-+.|.. +| ...|+|-|. .+.+..+.+-..+.|+.+++
T Consensus 51 ~vi~g~~t~g~G-~~p~~~~~fl~~l~~~~l~~k~~~vfG~Gd~~y~~~~~a~~~~~~~l~~~g~~~~~ 118 (146)
T PRK07308 51 IAIVATYTYGDG-ELPDEIVDFYEDLADLDLSGKIYGVVGSGDTFYDYFCKSVDDFEAQFALTGATKGA 118 (146)
T ss_pred EEEEEeCccCCC-CCCHHHHHHHHHHhcCCCCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHHcCCeEcc
Confidence 444555554311 111234455555533 23 334666653 13344444434456666544
No 497
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=20.02 E-value=5.8e+02 Score=22.13 Aligned_cols=69 Identities=10% Similarity=0.113 Sum_probs=42.0
Q ss_pred cCcceEEEEeCCCCCC---CHHHHHHHHHHHHHHHHcCCeEEecCCCCChhHH--HHHHHHhcCCeEEEEecCcCC
Q 028256 16 SRFKRVCVFCGSSPGK---SPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGL--VSQAVYDGGRHVLGVIPKTLM 86 (211)
Q Consensus 16 ~~~~~I~Vfggs~~~~---~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a--~a~gA~~~gG~viGv~P~~~~ 86 (211)
.-..-|.|.|++.... .++..+..+...+. +.....|+.|-|. .+-++ .++.|.+.|...+-++|..+.
T Consensus 38 ~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~-~~g~~pvi~gv~~-~t~~ai~~a~~a~~~Gadav~~~pP~y~ 111 (296)
T TIGR03249 38 YGLEALFAAGGTGEFFSLTPAEYEQVVEIAVST-AKGKVPVYTGVGG-NTSDAIEIARLAEKAGADGYLLLPPYLI 111 (296)
T ss_pred cCCCEEEECCCCcCcccCCHHHHHHHHHHHHHH-hCCCCcEEEecCc-cHHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 3455677776655442 34444444434333 4445788888775 55555 356677889888888876654
No 498
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=20.00 E-value=2.8e+02 Score=25.40 Aligned_cols=55 Identities=24% Similarity=0.251 Sum_probs=35.5
Q ss_pred EEEeCCCCCC--CHHHHHHHHHHHHHHHHcCCe-EEecCCCCChhHHHHHHHHhcCCeEEEE
Q 028256 22 CVFCGSSPGK--SPSYQLAAIQLGKQLVERNID-LVYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (211)
Q Consensus 22 ~Vfggs~~~~--~~~~~~~A~~lG~~la~~g~~-lv~GGg~~GlM~a~a~gA~~~gG~viGv 80 (211)
++.++||... .++.. .+..+.|.+.|+. ||.=||. |-+..+.+=+-+.+-.+|||
T Consensus 67 T~lgssR~~~~~~~e~~---~~~~~~l~~~gId~LvvIGGD-gS~~gA~~Lae~~~i~vVGv 124 (347)
T COG0205 67 TFLGSARFPEFKTEEGR---KVAAENLKKLGIDALVVIGGD-GSYTGAALLAEEGGIPVVGV 124 (347)
T ss_pred eEEeeCCCCCcccHHHH---HHHHHHHHHcCCCEEEEECCC-ChHHHHHHHHHhcCCcEEec
Confidence 4566666553 23333 3566677777764 3444556 88888877777777889998
Done!