Your job contains 1 sequence.
>028257
MSSKSICSPSESSSSTKSWIVHGIVAGAAIAVAVGARAYLGRSKNFRSRVVGIIPARFAS
SRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESC
RNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKP
EDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 028257
(211 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2037015 - symbol:CKS "CMP-KDO synthetase" spec... 836 1.9e-83 1
TIGR_CMR|SO_2478 - symbol:SO_2478 "3-deoxy-D-manno-octulo... 349 7.7e-32 1
UNIPROTKB|Q9KQX2 - symbol:kdsB "3-deoxy-manno-octulosonat... 344 2.6e-31 1
TIGR_CMR|GSU_1896 - symbol:GSU_1896 "3-deoxy-D-manno-octu... 344 2.6e-31 1
TIGR_CMR|VC_1875 - symbol:VC_1875 "3-deoxy-manno-octuloso... 344 2.6e-31 1
UNIPROTKB|P04951 - symbol:kdsB "3-deoxy-D-manno-octuloson... 321 7.1e-29 1
TIGR_CMR|CPS_2128 - symbol:CPS_2128 "3-deoxy-D-manno-octu... 312 6.4e-28 1
TIGR_CMR|CBU_0479 - symbol:CBU_0479 "3-deoxy-D-manno-octu... 294 5.2e-26 1
TIGR_CMR|CJE_0904 - symbol:CJE_0904 "3-deoxy-D-manno-octu... 284 5.9e-25 1
TIGR_CMR|SPO_0038 - symbol:SPO_0038 "3-deoxy-D-manno-octu... 284 5.9e-25 1
UNIPROTKB|Q0BY57 - symbol:HNE_2908 "Putative 3-deoxy-D-ma... 214 1.6e-17 1
UNIPROTKB|Q483E6 - symbol:CPS_2094 "Putative acylneuramin... 121 2.2e-06 1
TIGR_CMR|CPS_2094 - symbol:CPS_2094 "putative acylneurami... 121 2.2e-06 1
UNIPROTKB|Q5HT94 - symbol:neuA "CMP-N-acetylneuraminic ac... 121 2.2e-06 1
TIGR_CMR|CJE_1506 - symbol:CJE_1506 "CMP-N-acetylneuramin... 121 2.2e-06 1
TIGR_CMR|GSU_1972 - symbol:GSU_1972 "acylneuraminate cyti... 120 3.7e-06 1
>TAIR|locus:2037015 [details] [associations]
symbol:CKS "CMP-KDO synthetase" species:3702 "Arabidopsis
thaliana" [GO:0008690 "3-deoxy-manno-octulosonate
cytidylyltransferase activity" evidence=IEA;IDA] [GO:0009103
"lipopolysaccharide biosynthetic process" evidence=IEA;ISS]
[GO:0016779 "nucleotidyltransferase activity" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0009555 "pollen
development" evidence=IMP] [GO:0009860 "pollen tube growth"
evidence=IMP] [GO:0033468 "CMP-keto-3-deoxy-D-manno-octulosonic
acid biosynthetic process" evidence=IDA] [GO:0031307 "integral to
mitochondrial outer membrane" evidence=IDA] [GO:0019243
"methylglyoxal catabolic process to D-lactate" evidence=RCA]
HAMAP:MF_00057 InterPro:IPR003329 InterPro:IPR004528 Pfam:PF02348
UniPathway:UPA00358 EMBL:CP002684 GO:GO:0009555 GO:GO:0031307
GO:GO:0009860 GO:GO:0009103 EMBL:AC019018 EMBL:AJ505021
EMBL:AK317553 IPI:IPI00529090 RefSeq:NP_175708.2 UniGene:At.18072
HSSP:P04951 ProteinModelPortal:Q9C920 SMR:Q9C920 STRING:Q9C920
PRIDE:Q9C920 EnsemblPlants:AT1G53000.1 GeneID:841733
KEGG:ath:AT1G53000 TAIR:At1g53000 HOGENOM:HOG000007602
InParanoid:Q9C920 KO:K00979 OMA:NSGTERC PhylomeDB:Q9C920
ProtClustDB:PLN02917 BRENDA:2.7.7.38 Genevestigator:Q9C920
GO:GO:0008690 GO:GO:0033468 PANTHER:PTHR21485:SF4
TIGRFAMs:TIGR00466 Uniprot:Q9C920
Length = 290
Score = 836 (299.3 bits), Expect = 1.9e-83, P = 1.9e-83
Identities = 159/173 (91%), Positives = 165/173 (95%)
Query: 39 YLGRSKNFRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATD 98
YLGRSK FRSRVVGIIPAR+ASSRFEGKPLV ILGKPMIQRTWERSKLATTLDH+VVATD
Sbjct: 34 YLGRSKKFRSRVVGIIPARYASSRFEGKPLVQILGKPMIQRTWERSKLATTLDHIVVATD 93
Query: 99 DEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDG 158
DE+IAECC+ FGADVIMTSESCRNGTERCNEAL+KLEKKYD+VVNIQGDEPLIEPEIIDG
Sbjct: 94 DERIAECCRGFGADVIMTSESCRNGTERCNEALEKLEKKYDVVVNIQGDEPLIEPEIIDG 153
Query: 159 VVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
VVKALQ PDAVFSTAVTSLKPED DPNRVKCVVDN GYAIYFSRGLIPYNK
Sbjct: 154 VVKALQVTPDAVFSTAVTSLKPEDGLDPNRVKCVVDNRGYAIYFSRGLIPYNK 206
>TIGR_CMR|SO_2478 [details] [associations]
symbol:SO_2478 "3-deoxy-D-manno-octulosonate
cytidylyltransferase" species:211586 "Shewanella oneidensis MR-1"
[GO:0008690 "3-deoxy-manno-octulosonate cytidylyltransferase
activity" evidence=ISS] [GO:0009244 "lipopolysaccharide core region
biosynthetic process" evidence=ISS] HAMAP:MF_00057
InterPro:IPR003329 InterPro:IPR004528 Pfam:PF02348
UniPathway:UPA00030 UniPathway:UPA00358 GO:GO:0005737 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0009103 HSSP:P04951
HOGENOM:HOG000007602 KO:K00979 OMA:NSGTERC GO:GO:0008690
GO:GO:0033468 PANTHER:PTHR21485:SF4 TIGRFAMs:TIGR00466
eggNOG:COG1212 ProtClustDB:PRK05450 RefSeq:NP_718065.1
ProteinModelPortal:Q8EEA9 GeneID:1170191 KEGG:son:SO_2478
PATRIC:23524575 Uniprot:Q8EEA9
Length = 245
Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
Identities = 74/163 (45%), Positives = 101/163 (61%)
Query: 53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
+IPAR+ SSRF GKPL I GKPMIQ +ER+ LA L ++ VATDDE+I + FG
Sbjct: 6 LIPARYGSSRFPGKPLAPINGKPMIQHVYERASLAKGLTNIYVATDDERIKSAVEGFGGK 65
Query: 113 VIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
V+MTS +GT+R N+A+ +L K D+V+N+QGD+PLI+P I+ V+ + P F
Sbjct: 66 VVMTSPDAASGTDRINDAINQLGLKDDDLVINLQGDQPLIDPTSIEQVISLFERHPGE-F 124
Query: 172 STAVTS---LKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
A + + DP VK V DN YA+YFSR IP+ +
Sbjct: 125 EMATLGYEIVNKAELDDPMHVKMVFDNDYYALYFSRARIPFGR 167
>UNIPROTKB|Q9KQX2 [details] [associations]
symbol:kdsB "3-deoxy-manno-octulosonate
cytidylyltransferase" species:243277 "Vibrio cholerae O1 biovar El
Tor str. N16961" [GO:0008690 "3-deoxy-manno-octulosonate
cytidylyltransferase activity" evidence=ISS] [GO:0009244
"lipopolysaccharide core region biosynthetic process" evidence=ISS]
HAMAP:MF_00057 InterPro:IPR003329 InterPro:IPR004528 Pfam:PF02348
UniPathway:UPA00030 UniPathway:UPA00358 GO:GO:0005737 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0009244 KO:K00979 BRENDA:2.7.7.38
GO:GO:0008690 GO:GO:0033468 PANTHER:PTHR21485:SF4
TIGRFAMs:TIGR00466 eggNOG:COG1212 OMA:RAPLPWA ProtClustDB:PRK05450
PIR:A82146 RefSeq:NP_231509.1 PDB:3OAM PDBsum:3OAM
ProteinModelPortal:Q9KQX2 SMR:Q9KQX2 DNASU:2613629 GeneID:2613629
KEGG:vch:VC1875 PATRIC:20082792 EvolutionaryTrace:Q9KQX2
Uniprot:Q9KQX2
Length = 252
Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 75/161 (46%), Positives = 104/161 (64%)
Query: 53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
+IPAR+ S+R GKPL +I GKPMIQ +E++ A D +++ATDDE++ + Q FG
Sbjct: 6 VIPARYQSTRLPGKPLADIGGKPMIQWVYEQAMQAGA-DRVIIATDDERVEQAVQAFGGV 64
Query: 113 VIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
V MTS + ++GTER E + K+ D IVVN+QGDEPLI P II V L AA A
Sbjct: 65 VCMTSPNHQSGTERLAEVVAKMAIPADHIVVNVQGDEPLIPPAIIRQVADNL-AACSAPM 123
Query: 172 STAVTSLKPE-DAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
+T ++ E + F+PN VK + D GYA+YFSR IP+++
Sbjct: 124 ATLAVEIEDEAEVFNPNAVKVITDKSGYALYFSRATIPWDR 164
>TIGR_CMR|GSU_1896 [details] [associations]
symbol:GSU_1896 "3-deoxy-D-manno-octulosonate
cytidylyltransferase" species:243231 "Geobacter sulfurreducens PCA"
[GO:0008690 "3-deoxy-manno-octulosonate cytidylyltransferase
activity" evidence=ISS] [GO:0009244 "lipopolysaccharide core region
biosynthetic process" evidence=ISS] HAMAP:MF_00057
InterPro:IPR003329 InterPro:IPR004528 Pfam:PF02348
UniPathway:UPA00030 UniPathway:UPA00358 GO:GO:0005737 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0009103 HSSP:P04951
HOGENOM:HOG000007602 KO:K00979 OMA:NSGTERC GO:GO:0008690
GO:GO:0033468 PANTHER:PTHR21485:SF4 TIGRFAMs:TIGR00466
eggNOG:COG1212 ProtClustDB:PRK05450 RefSeq:NP_952945.2
ProteinModelPortal:Q74BY2 PRIDE:Q74BY2 GeneID:2686228
KEGG:gsu:GSU1896 PATRIC:22026657
BioCyc:GSUL243231:GH27-1932-MONOMER Uniprot:Q74BY2
Length = 250
Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 72/161 (44%), Positives = 98/161 (60%)
Query: 50 VVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF 109
+ IIPARFAS+RF GK L +I GKPM+Q +ER+ A + +VVATDD++IA+ + F
Sbjct: 3 ITAIIPARFASTRFPGKALADIAGKPMVQHVYERTARARLVSEVVVATDDDRIAQAVRGF 62
Query: 110 GADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDA 169
G V MTS GT+R E ++ +I+VN+QGDEPLIEP +ID + L P
Sbjct: 63 GGRVEMTSRDHETGTDRLAEVASRIGA--EIIVNVQGDEPLIEPAMIDEAIAPLAENPAV 120
Query: 170 VFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGLIPY 209
T + ++ D PN VK V D GYA+YFSR +P+
Sbjct: 121 RMGTLKSRIRTLHDFLSPNVVKVVTDLEGYALYFSRSPLPF 161
>TIGR_CMR|VC_1875 [details] [associations]
symbol:VC_1875 "3-deoxy-manno-octulosonate
cytidylyltransferase" species:686 "Vibrio cholerae O1 biovar El
Tor" [GO:0008690 "3-deoxy-manno-octulosonate cytidylyltransferase
activity" evidence=ISS] [GO:0009244 "lipopolysaccharide core region
biosynthetic process" evidence=ISS] HAMAP:MF_00057
InterPro:IPR003329 InterPro:IPR004528 Pfam:PF02348
UniPathway:UPA00030 UniPathway:UPA00358 GO:GO:0005737 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0009244 KO:K00979 BRENDA:2.7.7.38
GO:GO:0008690 GO:GO:0033468 PANTHER:PTHR21485:SF4
TIGRFAMs:TIGR00466 eggNOG:COG1212 OMA:RAPLPWA ProtClustDB:PRK05450
PIR:A82146 RefSeq:NP_231509.1 PDB:3OAM PDBsum:3OAM
ProteinModelPortal:Q9KQX2 SMR:Q9KQX2 DNASU:2613629 GeneID:2613629
KEGG:vch:VC1875 PATRIC:20082792 EvolutionaryTrace:Q9KQX2
Uniprot:Q9KQX2
Length = 252
Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 75/161 (46%), Positives = 104/161 (64%)
Query: 53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
+IPAR+ S+R GKPL +I GKPMIQ +E++ A D +++ATDDE++ + Q FG
Sbjct: 6 VIPARYQSTRLPGKPLADIGGKPMIQWVYEQAMQAGA-DRVIIATDDERVEQAVQAFGGV 64
Query: 113 VIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
V MTS + ++GTER E + K+ D IVVN+QGDEPLI P II V L AA A
Sbjct: 65 VCMTSPNHQSGTERLAEVVAKMAIPADHIVVNVQGDEPLIPPAIIRQVADNL-AACSAPM 123
Query: 172 STAVTSLKPE-DAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
+T ++ E + F+PN VK + D GYA+YFSR IP+++
Sbjct: 124 ATLAVEIEDEAEVFNPNAVKVITDKSGYALYFSRATIPWDR 164
>UNIPROTKB|P04951 [details] [associations]
symbol:kdsB "3-deoxy-D-manno-octulosonate
cytidylyltransferase" species:83333 "Escherichia coli K-12"
[GO:0033468 "CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic
process" evidence=IEA] [GO:0019294
"keto-3-deoxy-D-manno-octulosonic acid biosynthetic process"
evidence=IDA] [GO:0000287 "magnesium ion binding" evidence=IDA]
[GO:0008690 "3-deoxy-manno-octulosonate cytidylyltransferase
activity" evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA]
HAMAP:MF_00057 InterPro:IPR003329 InterPro:IPR004528 Pfam:PF02348
UniPathway:UPA00030 UniPathway:UPA00358 GO:GO:0005737 GO:GO:0000287
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0019294 HOGENOM:HOG000007602
KO:K00979 GO:GO:0008690 GO:GO:0033468 PANTHER:PTHR21485:SF4
TIGRFAMs:TIGR00466 eggNOG:COG1212 OMA:RAPLPWA ProtClustDB:PRK05450
EMBL:J02614 PIR:A26322 RefSeq:NP_415438.1 RefSeq:YP_489190.1
PDB:1VH1 PDB:3K8D PDB:3K8E PDBsum:1VH1 PDBsum:3K8D PDBsum:3K8E
ProteinModelPortal:P04951 SMR:P04951 DIP:DIP-10066N IntAct:P04951
MINT:MINT-1224838 SWISS-2DPAGE:P04951 PRIDE:P04951
EnsemblBacteria:EBESCT00000001713 EnsemblBacteria:EBESCT00000016199
GeneID:12931016 GeneID:945539 KEGG:ecj:Y75_p0890 KEGG:eco:b0918
PATRIC:32117049 EchoBASE:EB0514 EcoGene:EG10519
BioCyc:EcoCyc:CPM-KDOSYNTH-MONOMER BioCyc:ECOL316407:JW0901-MONOMER
BioCyc:MetaCyc:CPM-KDOSYNTH-MONOMER EvolutionaryTrace:P04951
Genevestigator:P04951 Uniprot:P04951
Length = 248
Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
Identities = 71/162 (43%), Positives = 100/162 (61%)
Query: 51 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFG 110
V IIPAR+AS+R GKPLV+I GKPMI ER++ + + ++VATD E +A + G
Sbjct: 4 VVIIPARYASTRLPGKPLVDINGKPMIVHVLERAR-ESGAERIIVATDHEDVARAVEAAG 62
Query: 111 ADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDA 169
+V MT ++GTER E ++K D ++VN+QGDEP+I II V L
Sbjct: 63 GEVCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVG 122
Query: 170 VFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
+ + AV E+AF+PN VK V+D GYA+YFSR IP+++
Sbjct: 123 MATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDR 164
>TIGR_CMR|CPS_2128 [details] [associations]
symbol:CPS_2128 "3-deoxy-D-manno-octulosonate
cytidylyltransferase" species:167879 "Colwellia psychrerythraea
34H" [GO:0008690 "3-deoxy-manno-octulosonate cytidylyltransferase
activity" evidence=ISS] [GO:0009244 "lipopolysaccharide core region
biosynthetic process" evidence=ISS] HAMAP:MF_00057
InterPro:IPR003329 InterPro:IPR004528 Pfam:PF02348
UniPathway:UPA00030 UniPathway:UPA00358 GO:GO:0005737 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0009103 HOGENOM:HOG000007602
KO:K00979 GO:GO:0008690 GO:GO:0033468 PANTHER:PTHR21485:SF4
TIGRFAMs:TIGR00466 RefSeq:YP_268854.1 ProteinModelPortal:Q483B3
SMR:Q483B3 STRING:Q483B3 GeneID:3522547 KEGG:cps:CPS_2128
PATRIC:21467371 eggNOG:COG1212 OMA:RAPLPWA
BioCyc:CPSY167879:GI48-2198-MONOMER Uniprot:Q483B3
Length = 280
Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
Identities = 72/167 (43%), Positives = 104/167 (62%)
Query: 51 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFG 110
V +IPAR+ SSR GK L +I GKPMIQ E+++L+ ++VATD++++A FG
Sbjct: 20 VVVIPARYQSSRLPGKVLADIDGKPMIQWVVEKAQLSGARQ-VIVATDNDEVAAVVNSFG 78
Query: 111 ADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKAL----QA 165
A+V T ++GTER E ++K + D I+VN+QGDEP I P+ I V L Q+
Sbjct: 79 AEVCKTRADHQSGTERLAEVMEKYQFSDDEIIVNVQGDEPFIPPDNIAQVANNLANQQQS 138
Query: 166 APDAVFSTAVTSLKPED-AFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
+ A ST ++ D AF+PN VK ++D GYA+YFSR IPY++
Sbjct: 139 SHVARMSTLAINIDSVDEAFNPNAVKVILDKDGYALYFSRATIPYDR 185
>TIGR_CMR|CBU_0479 [details] [associations]
symbol:CBU_0479 "3-deoxy-D-manno-octulosonate
cytidylyltransferase" species:227377 "Coxiella burnetii RSA 493"
[GO:0008690 "3-deoxy-manno-octulosonate cytidylyltransferase
activity" evidence=ISS] [GO:0019294
"keto-3-deoxy-D-manno-octulosonic acid biosynthetic process"
evidence=ISS] HAMAP:MF_00057 InterPro:IPR003329 InterPro:IPR004528
Pfam:PF02348 UniPathway:UPA00030 UniPathway:UPA00358 GO:GO:0005737
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0009103
HOGENOM:HOG000007602 KO:K00979 GO:GO:0008690 GO:GO:0033468
PANTHER:PTHR21485:SF4 TIGRFAMs:TIGR00466 eggNOG:COG1212 OMA:RAPLPWA
RefSeq:NP_819514.2 PDB:3TQD PDBsum:3TQD ProteinModelPortal:Q83E52
PRIDE:Q83E52 GeneID:1208363 KEGG:cbu:CBU_0479 PATRIC:17929649
ProtClustDB:PRK05450 BioCyc:CBUR227377:GJ7S-476-MONOMER
EvolutionaryTrace:Q83E52 Uniprot:Q83E52
Length = 249
Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
Identities = 66/161 (40%), Positives = 100/161 (62%)
Query: 53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
IIPARF S+R GK LV+I GKPMIQ +E S + + + +V+ATDD++I + + FGA
Sbjct: 6 IIPARFDSTRLPGKALVDIAGKPMIQHVYE-SAIKSGAEEVVIATDDKRIRQVAEDFGAV 64
Query: 113 VIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
V MTS ++GTER EA L + D I+V +QGDEPLI P+ I + + L +
Sbjct: 65 VCMTSSDHQSGTERIAEAAVALGFEDDEIIVCLQGDEPLIPPDAIRKLAEDLDEHDNVKV 124
Query: 172 STAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
++ T + + ++ F+P+ K V++ YA+YFS IP+ +
Sbjct: 125 ASLCTPITEVDELFNPHSTKVVLNRRNYALYFSHAPIPWGR 165
>TIGR_CMR|CJE_0904 [details] [associations]
symbol:CJE_0904 "3-deoxy-D-manno-octulosonate
cytidylyltransferase" species:195099 "Campylobacter jejuni RM1221"
[GO:0008690 "3-deoxy-manno-octulosonate cytidylyltransferase
activity" evidence=ISS] [GO:0009244 "lipopolysaccharide core region
biosynthetic process" evidence=ISS] InterPro:IPR003329
InterPro:IPR004528 Pfam:PF02348 UniPathway:UPA00030
UniPathway:UPA00358 GO:GO:0005737 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0009103 HOGENOM:HOG000007602
KO:K00979 OMA:NSGTERC GO:GO:0008690 GO:GO:0033468
PANTHER:PTHR21485:SF4 TIGRFAMs:TIGR00466 eggNOG:COG1212
ProtClustDB:PRK05450 RefSeq:YP_178906.1 ProteinModelPortal:Q5HUX9
STRING:Q5HUX9 GeneID:3231417 KEGG:cjr:CJE0904 PATRIC:20043575
BioCyc:CJEJ195099:GJC0-924-MONOMER Uniprot:Q5HUX9
Length = 239
Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
Identities = 63/162 (38%), Positives = 95/162 (58%)
Query: 53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
IIPAR SSRF K L ++ G PM T R +++D + +A DDEK+ +++G +
Sbjct: 3 IIPARLKSSRFHEKILCDVGGVPMFVATARR---VSSVDEVCIALDDEKVLSIAKEYGLN 59
Query: 113 VIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPD--A 169
++TS++ +GT+R NEA +KL K D I++N+Q DEP IE E + + + D A
Sbjct: 60 AVLTSKNHESGTDRINEACKKLSLKDDEIIINVQADEPFIECENLLKFKEFASSCLDKKA 119
Query: 170 VFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
++ + E+A D N VK + D GYA+YFSR IPY +
Sbjct: 120 FMASCYKKITQEEAMDSNLVKVLCDKEGYALYFSRAKIPYER 161
>TIGR_CMR|SPO_0038 [details] [associations]
symbol:SPO_0038 "3-deoxy-D-manno-octulosonate
cytidylyltransferase" species:246200 "Ruegeria pomeroyi DSS-3"
[GO:0008690 "3-deoxy-manno-octulosonate cytidylyltransferase
activity" evidence=ISS] [GO:0009244 "lipopolysaccharide core region
biosynthetic process" evidence=ISS] InterPro:IPR003329
InterPro:IPR004528 Pfam:PF02348 GO:GO:0005737 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0009103 HOGENOM:HOG000007602
KO:K00979 OMA:NSGTERC GO:GO:0008690 PANTHER:PTHR21485:SF4
ProtClustDB:PRK05450 RefSeq:YP_165311.1 ProteinModelPortal:Q5LWI2
GeneID:3196170 KEGG:sil:SPO0038 PATRIC:23373307 Uniprot:Q5LWI2
Length = 266
Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
Identities = 58/127 (45%), Positives = 83/127 (65%)
Query: 54 IPARFASSRFEGKPLVNILGKP-----MIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
IPAR+AS+R+ GKPLV++ G +I+R+W + + D +VVATDD++I +
Sbjct: 7 IPARYASTRYPGKPLVSLTGASGTEMTLIERSWRAAMAVSGADRVVVATDDDRIRAVAEG 66
Query: 109 FGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
FGA+V+MTS C NGTERC EA L +DIVVN+QGD PL ++ ++ L+AAP+
Sbjct: 67 FGAEVVMTSSDCVNGTERCAEAHAVLGGGFDIVVNLQGDAPLTPHWFVEDLIAGLRAAPE 126
Query: 169 AVFSTAV 175
A +T V
Sbjct: 127 ADIATPV 133
>UNIPROTKB|Q0BY57 [details] [associations]
symbol:HNE_2908 "Putative 3-deoxy-D-manno-octulosonate
cytidylyltransferase" species:228405 "Hyphomonas neptunium ATCC
15444" [GO:0008690 "3-deoxy-manno-octulosonate cytidylyltransferase
activity" evidence=ISS] [GO:0009244 "lipopolysaccharide core region
biosynthetic process" evidence=ISS] InterPro:IPR003329
InterPro:IPR004528 Pfam:PF02348 GO:GO:0005737 GO:GO:0009244
EMBL:CP000158 GenomeReviews:CP000158_GR HOGENOM:HOG000007602
KO:K00979 GO:GO:0008690 PANTHER:PTHR21485:SF4 eggNOG:COG1212
ProtClustDB:PRK05450 RefSeq:YP_761586.1 ProteinModelPortal:Q0BY57
STRING:Q0BY57 GeneID:4289023 KEGG:hne:HNE_2908 PATRIC:32218685
OMA:APCELEQ BioCyc:HNEP228405:GI69-2915-MONOMER Uniprot:Q0BY57
Length = 270
Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 58/168 (34%), Positives = 87/168 (51%)
Query: 53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTL----DHLVVATDDEKIAECCQQ 108
++PAR+ S+R GKPL I GK M+ R + ++ A VVATDD +I + C+
Sbjct: 6 VVPARYGSTRLPGKPLAKIAGKTMVSRVADLARRAAARLGKGAEFVVATDDTRILQYCRD 65
Query: 109 FGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ---- 164
+V+MT + +G++R A+ L D VVN+QGD P E + VV+AL+
Sbjct: 66 NNINVVMTDPALPSGSDRALAAVDGLGMSPDFVVNLQGDAPFTPAEHVVAVVEALEKSGT 125
Query: 165 --AAPDAVFS-TAVTSLKPEDAFDP-NRVKCVVDNHGYAIYFSRGLIP 208
A P S A+ L+ A P + V D G AI+FS+ ++P
Sbjct: 126 DAATPYIRLSWAALDQLRNHKAQTPFSGTTLVKDPKGRAIWFSKIILP 173
>UNIPROTKB|Q483E6 [details] [associations]
symbol:CPS_2094 "Putative acylneuraminate
cytidylyltransferase" species:167879 "Colwellia psychrerythraea
34H" [GO:0008781 "N-acylneuraminate cytidylyltransferase activity"
evidence=ISS] [GO:0045227 "capsule polysaccharide biosynthetic
process" evidence=ISS] InterPro:IPR003329 Pfam:PF02348
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0045227 GO:GO:0009103
GO:GO:0008781 KO:K00983 eggNOG:COG1083 HOGENOM:HOG000284760
RefSeq:YP_268821.1 ProteinModelPortal:Q483E6 STRING:Q483E6
GeneID:3519647 KEGG:cps:CPS_2094 PATRIC:21467301 OMA:VQDIDTL
BioCyc:CPSY167879:GI48-2164-MONOMER InterPro:IPR020039
TIGRFAMs:TIGR03584 Uniprot:Q483E6
Length = 231
Score = 121 (47.7 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 25/63 (39%), Positives = 39/63 (61%)
Query: 51 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFG 110
+ IIPAR S R K + N GKP+I + E + + D ++V+TDD +IAE +++G
Sbjct: 3 IAIIPARGGSKRIPRKNIKNFHGKPLIAYSIEAALKSECFDRVIVSTDDSEIAEVAKKYG 62
Query: 111 ADV 113
A+V
Sbjct: 63 AEV 65
>TIGR_CMR|CPS_2094 [details] [associations]
symbol:CPS_2094 "putative acylneuraminate
cytidylyltransferase" species:167879 "Colwellia psychrerythraea
34H" [GO:0008781 "N-acylneuraminate cytidylyltransferase activity"
evidence=ISS] [GO:0045227 "capsule polysaccharide biosynthetic
process" evidence=ISS] InterPro:IPR003329 Pfam:PF02348
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0045227 GO:GO:0009103
GO:GO:0008781 KO:K00983 eggNOG:COG1083 HOGENOM:HOG000284760
RefSeq:YP_268821.1 ProteinModelPortal:Q483E6 STRING:Q483E6
GeneID:3519647 KEGG:cps:CPS_2094 PATRIC:21467301 OMA:VQDIDTL
BioCyc:CPSY167879:GI48-2164-MONOMER InterPro:IPR020039
TIGRFAMs:TIGR03584 Uniprot:Q483E6
Length = 231
Score = 121 (47.7 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 25/63 (39%), Positives = 39/63 (61%)
Query: 51 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFG 110
+ IIPAR S R K + N GKP+I + E + + D ++V+TDD +IAE +++G
Sbjct: 3 IAIIPARGGSKRIPRKNIKNFHGKPLIAYSIEAALKSECFDRVIVSTDDSEIAEVAKKYG 62
Query: 111 ADV 113
A+V
Sbjct: 63 AEV 65
>UNIPROTKB|Q5HT94 [details] [associations]
symbol:neuA "CMP-N-acetylneuraminic acid synthetase"
species:195099 "Campylobacter jejuni RM1221" [GO:0000271
"polysaccharide biosynthetic process" evidence=ISS] [GO:0008781
"N-acylneuraminate cytidylyltransferase activity" evidence=ISS]
InterPro:IPR003329 Pfam:PF02348 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0009103 GO:GO:0000271 GO:GO:0008781
eggNOG:COG1083 HOGENOM:HOG000284760 OMA:VQDIDTL InterPro:IPR020039
TIGRFAMs:TIGR03584 RefSeq:YP_179491.1 ProteinModelPortal:Q5HT94
STRING:Q5HT94 GeneID:3232137 KEGG:cjr:CJE1506 PATRIC:20044804
KO:K15899 ProtClustDB:CLSK879196
BioCyc:CJEJ195099:GJC0-1534-MONOMER Uniprot:Q5HT94
Length = 232
Score = 121 (47.7 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 41/156 (26%), Positives = 71/156 (45%)
Query: 53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
IIPAR S R K +++ LGKP+I + E + + D +V+++DDE+I E ++GA
Sbjct: 6 IIPARGGSKRIPRKNIIDFLGKPLIAYSIENALNSGIFDEVVLSSDDEEIIEVALKYGAK 65
Query: 113 VIMT-----SESCRNGTERCNEALQKLEKK---YDIVVNIQGDEPLIEPEII-DGVVKAL 163
S+ + T A++ L+ + YD V + PL+ I+ K +
Sbjct: 66 APFVRDKNLSDDYASSTAAVQNAIEILQSQNQIYDHVCCLYATAPLLNKNILKQAYEKFI 125
Query: 164 QAAPDAVFSTAVTSLKPEDAF---DPNRVKCVVDNH 196
Q +F+ + AF + N+V + H
Sbjct: 126 QNESKFLFAATEFEYPIQRAFYLNENNQVYMFDEKH 161
>TIGR_CMR|CJE_1506 [details] [associations]
symbol:CJE_1506 "CMP-N-acetylneuraminic acid synthetase"
species:195099 "Campylobacter jejuni RM1221" [GO:0000271
"polysaccharide biosynthetic process" evidence=ISS] [GO:0008781
"N-acylneuraminate cytidylyltransferase activity" evidence=ISS]
InterPro:IPR003329 Pfam:PF02348 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0009103 GO:GO:0000271 GO:GO:0008781
eggNOG:COG1083 HOGENOM:HOG000284760 OMA:VQDIDTL InterPro:IPR020039
TIGRFAMs:TIGR03584 RefSeq:YP_179491.1 ProteinModelPortal:Q5HT94
STRING:Q5HT94 GeneID:3232137 KEGG:cjr:CJE1506 PATRIC:20044804
KO:K15899 ProtClustDB:CLSK879196
BioCyc:CJEJ195099:GJC0-1534-MONOMER Uniprot:Q5HT94
Length = 232
Score = 121 (47.7 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 41/156 (26%), Positives = 71/156 (45%)
Query: 53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
IIPAR S R K +++ LGKP+I + E + + D +V+++DDE+I E ++GA
Sbjct: 6 IIPARGGSKRIPRKNIIDFLGKPLIAYSIENALNSGIFDEVVLSSDDEEIIEVALKYGAK 65
Query: 113 VIMT-----SESCRNGTERCNEALQKLEKK---YDIVVNIQGDEPLIEPEII-DGVVKAL 163
S+ + T A++ L+ + YD V + PL+ I+ K +
Sbjct: 66 APFVRDKNLSDDYASSTAAVQNAIEILQSQNQIYDHVCCLYATAPLLNKNILKQAYEKFI 125
Query: 164 QAAPDAVFSTAVTSLKPEDAF---DPNRVKCVVDNH 196
Q +F+ + AF + N+V + H
Sbjct: 126 QNESKFLFAATEFEYPIQRAFYLNENNQVYMFDEKH 161
>TIGR_CMR|GSU_1972 [details] [associations]
symbol:GSU_1972 "acylneuraminate cytidylyltransferase,
putative" species:243231 "Geobacter sulfurreducens PCA" [GO:0000271
"polysaccharide biosynthetic process" evidence=ISS] [GO:0008781
"N-acylneuraminate cytidylyltransferase activity" evidence=ISS]
InterPro:IPR003329 Pfam:PF02348 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0009103 GO:GO:0016779 KO:K00983
HOGENOM:HOG000284760 RefSeq:NP_953021.1 ProteinModelPortal:Q74BR9
GeneID:2686184 KEGG:gsu:GSU1972 PATRIC:22026807 OMA:SACEFEY
ProtClustDB:CLSK763152 BioCyc:GSUL243231:GH27-1915-MONOMER
Uniprot:Q74BR9
Length = 235
Score = 120 (47.3 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 26/69 (37%), Positives = 42/69 (60%)
Query: 51 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFG 110
+ +IPAR S R GK + ++GKP+I T E + + + +VV+TD ++IAE Q+ G
Sbjct: 6 IAVIPARGGSKRVPGKNIKPLMGKPLIAYTVEAAADSGLFERIVVSTDCQEIAEVAQRHG 65
Query: 111 ADVIMTSES 119
A+V E+
Sbjct: 66 AEVPFLREA 74
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.136 0.407 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 211 175 0.00078 109 3 11 22 0.40 32
31 0.49 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 16
No. of states in DFA: 592 (63 KB)
Total size of DFA: 156 KB (2093 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 17.65u 0.25s 17.90t Elapsed: 00:00:01
Total cpu time: 17.65u 0.25s 17.90t Elapsed: 00:00:01
Start: Fri May 10 10:21:04 2013 End: Fri May 10 10:21:05 2013