Query 028257
Match_columns 211
No_of_seqs 150 out of 1216
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 08:42:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028257.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028257hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02917 CMP-KDO synthetase 100.0 3.5E-39 7.7E-44 279.9 22.3 206 6-211 4-209 (293)
2 COG1212 KdsB CMP-2-keto-3-deox 100.0 7.5E-27 1.6E-31 192.1 17.7 162 47-210 1-164 (247)
3 TIGR00466 kdsB 3-deoxy-D-manno 99.9 5.2E-26 1.1E-30 191.9 18.8 157 52-210 2-160 (238)
4 PRK05450 3-deoxy-manno-octulos 99.9 6.9E-24 1.5E-28 178.3 19.6 159 48-209 1-162 (245)
5 PRK13368 3-deoxy-manno-octulos 99.9 3.8E-23 8.2E-28 173.1 19.3 156 48-205 1-157 (238)
6 cd02517 CMP-KDO-Synthetase CMP 99.9 1E-22 2.3E-27 170.5 19.3 159 49-207 1-160 (239)
7 PF01128 IspD: 2-C-methyl-D-er 99.9 3.2E-23 7E-28 173.2 12.1 145 50-200 1-163 (221)
8 PF02348 CTP_transf_3: Cytidyl 99.9 2.7E-22 5.9E-27 165.5 16.3 160 51-210 1-162 (217)
9 PLN02728 2-C-methyl-D-erythrit 99.9 2.2E-22 4.7E-27 171.4 15.2 152 48-200 23-188 (252)
10 PRK13385 2-C-methyl-D-erythrit 99.9 1.3E-21 2.9E-26 163.7 12.8 151 48-200 1-167 (230)
11 PRK09382 ispDF bifunctional 2- 99.9 3.3E-21 7.1E-26 172.6 16.0 152 46-200 2-160 (378)
12 PF12804 NTP_transf_3: MobA-li 99.9 2.5E-21 5.4E-26 152.5 13.1 120 52-173 1-122 (160)
13 COG1211 IspD 4-diphosphocytidy 99.9 3E-21 6.5E-26 161.5 12.5 150 47-200 2-170 (230)
14 cd02513 CMP-NeuAc_Synthase CMP 99.9 2.5E-20 5.3E-25 154.0 16.5 127 49-175 1-136 (223)
15 TIGR03584 PseF pseudaminic aci 99.9 2.8E-20 6.2E-25 155.5 16.9 125 52-176 2-134 (222)
16 PRK02726 molybdopterin-guanine 99.8 3.5E-20 7.7E-25 152.4 14.9 118 44-165 2-120 (200)
17 cd04182 GT_2_like_f GT_2_like_ 99.8 5.1E-20 1.1E-24 147.4 14.3 116 50-166 1-119 (186)
18 cd02503 MobA MobA catalyzes th 99.8 5.7E-20 1.2E-24 147.6 14.0 117 51-173 2-119 (181)
19 PRK00155 ispD 2-C-methyl-D-ery 99.8 8.9E-20 1.9E-24 152.0 14.8 150 47-199 1-165 (227)
20 TIGR00453 ispD 2-C-methyl-D-er 99.8 1.5E-19 3.2E-24 149.5 13.8 147 51-200 1-161 (217)
21 cd02516 CDP-ME_synthetase CDP- 99.8 1.4E-19 3E-24 149.3 12.9 148 51-200 2-166 (218)
22 TIGR03202 pucB xanthine dehydr 99.8 2E-19 4.4E-24 146.0 13.0 118 51-169 2-127 (190)
23 TIGR03310 matur_ygfJ molybdenu 99.8 3.9E-19 8.6E-24 143.1 12.9 115 52-168 2-120 (188)
24 TIGR02665 molyb_mobA molybdopt 99.8 5.4E-19 1.2E-23 142.5 13.7 112 50-165 1-115 (186)
25 PRK00317 mobA molybdopterin-gu 99.8 9.2E-19 2E-23 142.5 15.0 118 47-170 1-121 (193)
26 COG1083 NeuA CMP-N-acetylneura 99.8 4.9E-19 1.1E-23 144.9 12.4 131 47-177 1-137 (228)
27 COG0746 MobA Molybdopterin-gua 99.8 9.3E-19 2E-23 143.5 13.5 118 47-170 2-119 (192)
28 COG2068 Uncharacterized MobA-r 99.8 2.3E-18 5E-23 140.4 13.5 119 47-166 3-125 (199)
29 cd02518 GT2_SpsF SpsF is a gly 99.8 5E-18 1.1E-22 142.0 14.8 115 52-170 2-121 (233)
30 TIGR00454 conserved hypothetic 99.8 2.5E-17 5.5E-22 134.0 15.8 112 51-166 2-117 (183)
31 cd02540 GT2_GlmU_N_bac N-termi 99.8 5.7E-17 1.2E-21 134.3 17.1 144 52-204 1-151 (229)
32 PRK14490 putative bifunctional 99.7 1.7E-17 3.8E-22 148.3 14.0 113 46-163 171-284 (369)
33 PRK00560 molybdopterin-guanine 99.7 2.8E-17 6.1E-22 134.8 13.3 109 44-161 3-114 (196)
34 PRK14358 glmU bifunctional N-a 99.7 1.4E-16 3E-21 146.9 18.7 153 47-207 5-163 (481)
35 PRK14353 glmU bifunctional N-a 99.7 1.5E-16 3.3E-21 144.7 17.4 125 47-172 3-133 (446)
36 PRK14356 glmU bifunctional N-a 99.7 2.5E-16 5.3E-21 143.7 17.7 146 49-204 5-156 (456)
37 COG2266 GTP:adenosylcobinamide 99.7 9.5E-17 2.1E-21 128.0 12.3 106 52-164 3-112 (177)
38 PRK14500 putative bifunctional 99.7 1.6E-16 3.4E-21 141.0 13.4 113 48-165 159-272 (346)
39 COG1207 GlmU N-acetylglucosami 99.7 9.8E-16 2.1E-20 136.5 16.8 150 48-205 1-158 (460)
40 COG1861 SpsF Spore coat polysa 99.7 3.2E-16 6.9E-21 129.0 12.3 120 47-170 1-125 (241)
41 PRK09451 glmU bifunctional N-a 99.7 1.2E-15 2.6E-20 139.5 16.9 149 47-206 3-156 (456)
42 PRK14352 glmU bifunctional N-a 99.7 2.5E-15 5.3E-20 138.5 18.7 152 49-206 4-162 (482)
43 PRK14489 putative bifunctional 99.7 1.2E-15 2.7E-20 136.3 14.6 114 47-165 3-120 (366)
44 TIGR01173 glmU UDP-N-acetylglu 99.7 2.4E-15 5.1E-20 136.7 16.6 113 51-166 2-119 (451)
45 cd06915 NTP_transferase_WcbM_l 99.7 2.8E-15 6.1E-20 123.1 15.5 145 52-207 1-158 (223)
46 PRK14355 glmU bifunctional N-a 99.7 3.5E-15 7.5E-20 136.6 17.6 152 47-205 1-158 (459)
47 PRK14360 glmU bifunctional N-a 99.7 5.1E-15 1.1E-19 134.8 17.3 150 50-206 2-157 (450)
48 PRK14354 glmU bifunctional N-a 99.6 9.8E-15 2.1E-19 133.2 17.3 115 48-165 1-120 (458)
49 COG1213 Predicted sugar nucleo 99.6 3.3E-15 7.2E-20 124.4 11.6 151 47-210 1-160 (239)
50 cd06422 NTP_transferase_like_1 99.6 4.3E-14 9.3E-19 117.0 15.7 146 52-206 2-160 (221)
51 PRK14359 glmU bifunctional N-a 99.6 3.5E-14 7.6E-19 128.5 15.8 116 48-172 1-124 (430)
52 TIGR01105 galF UTP-glucose-1-p 99.6 1.6E-13 3.5E-18 119.5 17.1 114 49-166 3-157 (297)
53 cd04181 NTP_transferase NTP_tr 99.6 2.6E-13 5.5E-18 111.1 16.1 145 52-207 1-158 (217)
54 cd02538 G1P_TT_short G1P_TT_sh 99.5 3.2E-13 6.9E-18 113.3 16.3 146 51-206 2-161 (240)
55 COG1208 GCD1 Nucleoside-diphos 99.5 1.8E-13 4E-18 122.0 15.6 146 51-206 3-161 (358)
56 cd02509 GDP-M1P_Guanylyltransf 99.5 4.9E-13 1.1E-17 115.1 17.7 152 51-207 2-175 (274)
57 cd04197 eIF-2B_epsilon_N The N 99.5 3.8E-13 8.2E-18 111.5 16.3 153 51-209 2-180 (217)
58 PRK14357 glmU bifunctional N-a 99.5 3.2E-13 7E-18 123.0 16.5 117 51-172 2-124 (448)
59 TIGR01099 galU UTP-glucose-1-p 99.5 5E-13 1.1E-17 113.3 15.9 150 51-207 2-189 (260)
60 cd02523 PC_cytidylyltransferas 99.5 4.5E-13 9.7E-18 111.4 14.9 115 52-174 1-125 (229)
61 cd04183 GT2_BcE_like GT2_BcbE_ 99.5 3.7E-13 7.9E-18 112.0 14.3 143 52-205 1-157 (231)
62 PRK15480 glucose-1-phosphate t 99.5 5.2E-13 1.1E-17 116.1 15.7 146 49-206 3-164 (292)
63 cd06425 M1P_guanylylT_B_like_N 99.5 5.8E-13 1.3E-17 111.2 15.5 148 51-207 2-164 (233)
64 cd04198 eIF-2B_gamma_N The N-t 99.5 9.3E-13 2E-17 109.1 16.3 110 51-166 2-127 (214)
65 TIGR01207 rmlA glucose-1-phosp 99.5 4.3E-13 9.2E-18 116.3 14.4 144 52-206 2-160 (286)
66 PF00483 NTP_transferase: Nucl 99.5 2.1E-13 4.7E-18 114.2 12.2 150 51-208 1-168 (248)
67 cd04189 G1P_TT_long G1P_TT_lon 99.5 1.6E-12 3.5E-17 108.3 16.2 118 51-173 2-132 (236)
68 cd02541 UGPase_prokaryotic Pro 99.5 9.5E-13 2.1E-17 112.1 15.0 119 51-172 2-154 (267)
69 COG1209 RfbA dTDP-glucose pyro 99.5 9.9E-13 2.1E-17 111.7 14.4 143 52-206 3-160 (286)
70 PRK00844 glgC glucose-1-phosph 99.5 1.5E-12 3.3E-17 117.7 16.6 155 46-207 2-181 (407)
71 cd06426 NTP_transferase_like_2 99.5 1.5E-12 3.3E-17 107.3 14.6 143 52-207 1-156 (220)
72 PRK10122 GalU regulator GalF; 99.5 3.5E-12 7.7E-17 111.1 17.2 114 48-166 2-157 (297)
73 PRK05293 glgC glucose-1-phosph 99.5 1.7E-12 3.8E-17 115.9 15.3 151 48-206 2-180 (380)
74 cd02508 ADP_Glucose_PP ADP-glu 99.5 7.8E-13 1.7E-17 108.2 11.6 112 52-166 1-137 (200)
75 PRK00725 glgC glucose-1-phosph 99.5 3.1E-12 6.8E-17 116.4 16.4 154 46-207 12-193 (425)
76 PRK02862 glgC glucose-1-phosph 99.4 2.1E-12 4.6E-17 117.7 14.9 153 47-207 1-180 (429)
77 TIGR01208 rmlA_long glucose-1- 99.4 2.9E-12 6.4E-17 113.5 15.3 143 52-206 2-159 (353)
78 cd06428 M1P_guanylylT_A_like_N 99.4 8.1E-12 1.8E-16 105.9 16.4 150 52-207 1-168 (257)
79 TIGR02091 glgC glucose-1-phosp 99.4 2.6E-12 5.7E-17 113.9 13.0 147 52-206 1-174 (361)
80 TIGR02623 G1P_cyt_trans glucos 99.4 9.4E-12 2E-16 105.8 15.5 141 52-207 2-177 (254)
81 cd02524 G1P_cytidylyltransfera 99.4 1.1E-11 2.4E-16 104.9 15.7 145 52-208 1-179 (253)
82 KOG1322 GDP-mannose pyrophosph 99.4 6.5E-12 1.4E-16 109.0 13.0 152 48-209 8-177 (371)
83 TIGR01479 GMP_PMI mannose-1-ph 99.4 2.5E-11 5.4E-16 111.9 17.0 151 50-206 1-176 (468)
84 TIGR02092 glgD glucose-1-phosp 99.4 7.1E-12 1.5E-16 111.6 12.3 150 49-204 2-176 (369)
85 PLN02241 glucose-1-phosphate a 99.4 1.4E-11 3.1E-16 112.4 14.5 155 47-207 1-186 (436)
86 PRK13389 UTP--glucose-1-phosph 99.3 5.5E-11 1.2E-15 103.9 16.4 113 51-166 10-162 (302)
87 cd02507 eIF-2B_gamma_N_like Th 99.3 3.2E-11 6.8E-16 100.1 14.2 149 51-205 2-177 (216)
88 COG4750 LicC CTP:phosphocholin 99.3 4.4E-12 9.5E-17 102.7 8.0 101 51-157 2-111 (231)
89 PRK00576 molybdopterin-guanine 99.3 2.1E-11 4.4E-16 98.2 11.0 99 63-166 1-103 (178)
90 COG0836 {ManC} Mannose-1-phosp 99.3 1.8E-10 4E-15 99.9 15.2 134 50-184 2-154 (333)
91 PRK15460 cpsB mannose-1-phosph 99.2 6.7E-10 1.5E-14 102.5 14.8 136 47-184 3-158 (478)
92 KOG1460 GDP-mannose pyrophosph 99.1 1.1E-09 2.4E-14 94.2 11.9 157 48-209 1-174 (407)
93 KOG1462 Translation initiation 99.1 8.4E-11 1.8E-15 103.9 4.6 115 46-165 6-137 (433)
94 TIGR03552 F420_cofC 2-phospho- 99.1 1.3E-09 2.9E-14 88.6 11.0 94 74-171 30-123 (195)
95 COG1210 GalU UDP-glucose pyrop 99.1 3.7E-09 8E-14 90.2 13.5 125 49-176 4-162 (291)
96 COG0448 GlgC ADP-glucose pyrop 98.9 1.1E-08 2.3E-13 91.4 10.8 155 47-208 3-184 (393)
97 cd04180 UGPase_euk_like Eukary 98.5 6.2E-06 1.3E-10 71.0 15.5 107 50-156 1-153 (266)
98 cd04193 UDPGlcNAc_PPase UDPGlc 98.3 3.5E-05 7.6E-10 68.1 14.4 111 49-160 15-182 (323)
99 PTZ00339 UDP-N-acetylglucosami 98.1 4.2E-05 9.1E-10 70.9 12.2 113 48-161 105-277 (482)
100 KOG1461 Translation initiation 97.8 0.00047 1E-08 65.0 13.9 151 47-204 22-193 (673)
101 COG1920 Predicted nucleotidylt 97.5 0.00063 1.4E-08 55.5 8.4 108 52-173 3-120 (210)
102 PF01983 CofC: Guanylyl transf 97.5 0.00016 3.5E-09 60.4 4.6 109 51-172 2-121 (217)
103 cd02511 Beta4Glucosyltransfera 97.4 0.0088 1.9E-07 49.5 14.0 96 72-174 10-107 (229)
104 cd06421 CESA_CelA_like CESA_Ce 97.2 0.012 2.7E-07 47.8 13.5 92 75-169 15-115 (234)
105 PRK10714 undecaprenyl phosphat 97.2 0.01 2.2E-07 52.4 13.2 117 44-173 2-125 (325)
106 PLN02435 probable UDP-N-acetyl 97.1 0.0076 1.6E-07 56.1 11.6 113 48-160 115-287 (493)
107 cd00897 UGPase_euk Eukaryotic 97.1 0.002 4.3E-08 56.4 7.2 62 48-110 2-75 (300)
108 PLN02474 UTP--glucose-1-phosph 97.1 0.031 6.8E-07 51.8 15.3 64 47-110 77-151 (469)
109 PRK11204 N-glycosyltransferase 97.0 0.041 8.9E-07 49.6 15.8 104 48-169 54-165 (420)
110 cd06439 CESA_like_1 CESA_like_ 97.0 0.033 7.2E-07 46.0 14.1 102 46-165 27-136 (251)
111 cd06424 UGGPase UGGPase cataly 97.0 0.00098 2.1E-08 58.7 4.8 103 51-153 2-158 (315)
112 PLN02830 UDP-sugar pyrophospho 96.9 0.018 3.8E-07 55.1 12.4 115 48-163 127-298 (615)
113 cd06438 EpsO_like EpsO protein 96.8 0.041 8.8E-07 43.6 12.6 100 72-172 7-115 (183)
114 PRK13915 putative glucosyl-3-p 96.8 0.035 7.7E-07 48.6 13.3 111 46-172 29-152 (306)
115 TIGR03030 CelA cellulose synth 96.8 0.041 9E-07 53.6 14.5 92 76-170 146-260 (713)
116 cd00761 Glyco_tranf_GTA_type G 96.7 0.041 9E-07 40.4 11.4 94 73-169 8-108 (156)
117 TIGR03111 glyc2_xrt_Gpos1 puta 96.7 0.07 1.5E-06 48.9 15.0 105 48-170 49-163 (439)
118 PF00535 Glycos_transf_2: Glyc 96.7 0.0089 1.9E-07 45.2 7.6 97 72-172 8-112 (169)
119 TIGR03469 HonB hopene-associat 96.7 0.098 2.1E-06 47.0 15.1 111 47-172 39-167 (384)
120 PLN02726 dolichyl-phosphate be 96.7 0.092 2E-06 43.7 14.0 113 42-172 3-128 (243)
121 PRK11498 bcsA cellulose syntha 96.6 0.042 9.1E-07 54.5 13.0 92 76-170 275-371 (852)
122 cd04195 GT2_AmsE_like GT2_AmsE 96.5 0.073 1.6E-06 42.3 12.2 95 76-174 14-116 (201)
123 cd06427 CESA_like_2 CESA_like_ 96.5 0.14 3E-06 42.4 13.8 96 72-170 11-117 (241)
124 PF01704 UDPGP: UTP--glucose-1 96.3 0.0092 2E-07 54.6 6.3 61 48-109 55-127 (420)
125 cd06434 GT2_HAS Hyaluronan syn 96.3 0.11 2.5E-06 42.2 12.2 87 72-164 10-103 (235)
126 cd04184 GT2_RfbC_Mx_like Myxoc 96.2 0.24 5.2E-06 39.2 13.5 93 72-168 11-113 (202)
127 cd06423 CESA_like CESA_like is 96.1 0.16 3.6E-06 38.0 11.4 97 72-171 7-111 (180)
128 PF10111 Glyco_tranf_2_2: Glyc 96.0 0.2 4.3E-06 43.0 12.8 73 101-176 51-129 (281)
129 TIGR03472 HpnI hopanoid biosyn 95.9 0.35 7.7E-06 43.2 14.5 100 48-165 41-153 (373)
130 cd06442 DPM1_like DPM1_like re 95.9 0.18 3.9E-06 40.6 11.7 97 72-172 7-113 (224)
131 PF09837 DUF2064: Uncharacteri 95.9 0.037 8.1E-07 42.0 7.0 89 80-172 1-93 (122)
132 cd04186 GT_2_like_c Subfamily 95.9 0.16 3.5E-06 38.4 10.7 94 72-169 7-105 (166)
133 cd04179 DPM_DPG-synthase_like 95.9 0.24 5.2E-06 38.5 11.8 96 74-173 9-115 (185)
134 cd06435 CESA_NdvC_like NdvC_li 95.8 0.25 5.4E-06 40.3 12.2 88 75-164 12-110 (236)
135 PRK14583 hmsR N-glycosyltransf 95.7 0.47 1E-05 43.5 14.5 92 74-169 87-186 (444)
136 COG4284 UDP-glucose pyrophosph 95.6 0.013 2.9E-07 53.8 4.0 39 48-86 104-146 (472)
137 cd02520 Glucosylceramide_synth 95.5 0.57 1.2E-05 37.4 13.0 86 75-164 14-112 (196)
138 PRK10073 putative glycosyl tra 95.5 0.46 1E-05 41.8 13.4 105 49-172 7-120 (328)
139 cd04188 DPG_synthase DPG_synth 95.5 0.26 5.5E-06 39.7 10.9 98 72-173 7-118 (211)
140 cd02510 pp-GalNAc-T pp-GalNAc- 95.4 0.24 5.1E-06 42.6 11.1 97 72-172 8-117 (299)
141 cd04187 DPM1_like_bac Bacteria 95.4 0.55 1.2E-05 36.7 12.4 51 121-174 66-116 (181)
142 PTZ00260 dolichyl-phosphate be 95.4 0.5 1.1E-05 41.8 13.2 41 121-164 148-188 (333)
143 cd06433 GT_2_WfgS_like WfgS an 95.3 0.29 6.2E-06 38.2 10.4 89 72-165 8-102 (202)
144 cd06437 CESA_CaSu_A2 Cellulose 95.3 0.54 1.2E-05 38.4 12.5 89 72-164 11-113 (232)
145 cd06913 beta3GnTL1_like Beta 1 95.3 0.61 1.3E-05 37.8 12.6 102 71-175 6-121 (219)
146 cd02525 Succinoglycan_BP_ExoA 95.2 0.37 8E-06 39.2 11.1 89 73-166 11-109 (249)
147 PRK10018 putative glycosyl tra 94.9 0.93 2E-05 39.1 13.2 90 72-165 15-112 (279)
148 COG1215 Glycosyltransferases, 94.9 0.52 1.1E-05 42.3 12.1 105 48-169 54-168 (439)
149 cd04192 GT_2_like_e Subfamily 94.9 0.72 1.6E-05 37.0 11.8 93 72-167 7-111 (229)
150 COG1216 Predicted glycosyltran 94.7 0.84 1.8E-05 39.5 12.5 103 71-175 12-121 (305)
151 cd04196 GT_2_like_d Subfamily 94.5 0.91 2E-05 36.0 11.5 94 72-168 8-109 (214)
152 cd04185 GT_2_like_b Subfamily 94.4 0.9 2E-05 36.0 11.2 92 71-164 6-105 (202)
153 PRK10063 putative glycosyl tra 94.4 1.2 2.6E-05 37.5 12.4 81 72-157 11-101 (248)
154 cd02526 GT2_RfbF_like RfbF is 94.3 0.8 1.7E-05 37.2 11.0 87 70-160 5-97 (237)
155 TIGR01556 rhamnosyltran L-rham 94.2 1 2.2E-05 38.1 11.7 89 74-166 7-101 (281)
156 cd04191 Glucan_BSP_ModH Glucan 93.9 1.7 3.7E-05 36.9 12.5 43 125-168 83-125 (254)
157 cd06436 GlcNAc-1-P_transferase 93.1 2 4.3E-05 34.2 11.0 93 71-164 6-115 (191)
158 PRK05454 glucosyltransferase M 93.1 2 4.4E-05 41.9 12.8 91 77-168 144-250 (691)
159 cd06420 GT2_Chondriotin_Pol_N 92.9 2.6 5.6E-05 32.6 11.2 89 72-163 7-104 (182)
160 cd02522 GT_2_like_a GT_2_like_ 92.8 2.7 5.8E-05 33.6 11.4 89 72-166 9-100 (221)
161 KOG2388 UDP-N-acetylglucosamin 91.7 0.12 2.7E-06 47.6 2.5 77 4-86 58-140 (477)
162 COG0463 WcaA Glycosyltransfera 89.5 6 0.00013 29.4 9.9 98 47-162 2-106 (291)
163 KOG2978 Dolichol-phosphate man 89.2 12 0.00025 31.1 11.9 94 75-171 19-122 (238)
164 PF13641 Glyco_tranf_2_3: Glyc 89.1 1.3 2.7E-05 35.8 6.1 87 74-164 13-112 (228)
165 PRK14716 bacteriophage N4 adso 87.2 13 0.00029 35.0 12.3 92 71-163 75-183 (504)
166 COG3222 Uncharacterized protei 85.7 9.3 0.0002 31.3 9.0 91 74-166 37-132 (211)
167 PF13704 Glyco_tranf_2_4: Glyc 85.3 8 0.00017 27.1 7.9 79 74-153 4-87 (97)
168 cd04190 Chitin_synth_C C-termi 84.3 12 0.00027 30.9 9.8 32 137-169 73-104 (244)
169 PRK11234 nfrB bacteriophage N4 83.7 35 0.00076 33.7 13.8 91 71-164 72-180 (727)
170 cd02514 GT13_GLCNAC-TI GT13_GL 82.7 35 0.00076 30.4 13.3 102 72-175 9-136 (334)
171 PRK13010 purU formyltetrahydro 77.4 29 0.00062 30.3 9.9 99 42-159 88-190 (289)
172 PRK13011 formyltetrahydrofolat 75.4 36 0.00078 29.6 9.9 97 44-159 86-186 (286)
173 PF09258 Glyco_transf_64: Glyc 73.9 3.9 8.4E-05 34.8 3.5 100 74-177 12-114 (247)
174 PF07302 AroM: AroM protein; 73.0 45 0.00097 28.1 9.5 106 51-163 90-200 (221)
175 PF13712 Glyco_tranf_2_5: Glyc 69.2 28 0.0006 28.8 7.6 55 121-177 40-95 (217)
176 PF13506 Glyco_transf_21: Glyc 68.2 20 0.00042 28.6 6.3 39 125-165 20-58 (175)
177 PRK06027 purU formyltetrahydro 68.2 80 0.0017 27.4 10.6 91 52-159 92-186 (286)
178 COG2943 MdoH Membrane glycosyl 68.1 43 0.00093 32.1 9.1 37 134-171 237-273 (736)
179 TIGR02990 ectoine_eutA ectoine 67.0 77 0.0017 26.8 9.9 86 75-163 106-205 (239)
180 PRK15489 nfrB bacteriophage N4 65.2 1.5E+02 0.0032 29.4 12.6 96 71-168 80-192 (703)
181 PRK05647 purN phosphoribosylgl 62.8 81 0.0018 25.8 9.0 80 75-157 13-99 (200)
182 TIGR00655 PurU formyltetrahydr 57.8 89 0.0019 27.1 8.8 91 52-159 87-181 (280)
183 PF04028 DUF374: Domain of unk 53.5 71 0.0015 22.0 6.3 48 100-150 23-70 (74)
184 TIGR03715 KxYKxGKxW KxYKxGKxW 53.4 8.8 0.00019 21.5 1.3 12 15-26 9-20 (29)
185 COG0299 PurN Folate-dependent 52.1 1.4E+02 0.003 24.8 10.1 94 52-163 3-104 (200)
186 PF14097 SpoVAE: Stage V sporu 50.7 1.3E+02 0.0029 24.3 10.6 103 92-201 1-115 (180)
187 COG0788 PurU Formyltetrahydrof 47.8 80 0.0017 27.5 6.7 69 90-161 118-189 (287)
188 PF10087 DUF2325: Uncharacteri 42.4 87 0.0019 22.1 5.4 42 90-134 49-96 (97)
189 PF13684 Dak1_2: Dihydroxyacet 40.9 97 0.0021 27.2 6.5 55 92-148 98-153 (313)
190 KOG0384 Chromodomain-helicase 40.7 54 0.0012 34.3 5.3 123 66-194 676-828 (1373)
191 PF06306 CgtA: Beta-1,4-N-acet 40.4 86 0.0019 28.0 5.9 110 63-177 87-213 (347)
192 COG0079 HisC Histidinol-phosph 39.9 2.7E+02 0.006 24.8 10.1 87 74-165 85-176 (356)
193 PF09292 Neil1-DNA_bind: Endon 39.6 40 0.00087 20.2 2.6 22 188-209 16-37 (39)
194 TIGR00334 5S_RNA_mat_M5 ribonu 38.3 1.8E+02 0.0039 23.6 7.1 69 90-163 2-70 (174)
195 KOG2638 UDP-glucose pyrophosph 38.0 87 0.0019 29.1 5.7 63 47-109 101-174 (498)
196 COG3473 Maleate cis-trans isom 37.5 2.5E+02 0.0055 23.7 9.6 83 78-163 107-203 (238)
197 PRK00865 glutamate racemase; P 37.3 1.9E+02 0.0042 24.4 7.6 63 32-101 13-79 (261)
198 PF05679 CHGN: Chondroitin N-a 37.0 3.6E+02 0.0078 25.3 11.6 54 125-180 330-383 (499)
199 PF01053 Cys_Met_Meta_PP: Cys/ 36.9 2.8E+02 0.0061 25.1 9.0 92 76-175 82-178 (386)
200 COG2121 Uncharacterized protei 36.9 1.6E+02 0.0034 24.7 6.6 65 91-158 68-136 (214)
201 TIGR03599 YloV DAK2 domain fus 36.1 3E+02 0.0066 26.2 9.4 54 93-148 317-371 (530)
202 TIGR00067 glut_race glutamate 36.0 56 0.0012 27.7 4.1 77 32-113 6-88 (251)
203 PRK00652 lpxK tetraacyldisacch 35.4 1.1E+02 0.0024 27.1 6.0 34 42-87 43-78 (325)
204 PRK13412 fkp bifunctional fuco 34.3 40 0.00086 34.5 3.3 32 52-83 95-137 (974)
205 COG0421 SpeE Spermidine syntha 33.6 3.2E+02 0.0069 23.7 8.9 26 138-163 182-207 (282)
206 PRK13505 formate--tetrahydrofo 33.6 2.9E+02 0.0063 26.5 8.7 93 66-162 349-455 (557)
207 TIGR00460 fmt methionyl-tRNA f 30.3 3.7E+02 0.008 23.4 8.8 76 75-157 10-97 (313)
208 PRK07764 DNA polymerase III su 30.2 5.1E+02 0.011 26.1 10.2 38 137-176 120-157 (824)
209 COG1448 TyrB Aspartate/tyrosin 28.3 4.6E+02 0.0099 24.1 8.6 72 93-165 123-203 (396)
210 COG0796 MurI Glutamate racemas 28.1 3.4E+02 0.0073 23.5 7.6 114 32-163 13-134 (269)
211 PLN02828 formyltetrahydrofolat 27.8 4E+02 0.0087 23.0 9.9 89 52-159 73-168 (268)
212 COG0541 Ffh Signal recognition 27.4 5.2E+02 0.011 24.2 13.3 110 50-171 100-217 (451)
213 PHA00520 packaging NTPase P4 27.2 16 0.00035 32.2 -0.7 30 5-39 108-137 (330)
214 KOG0734 AAA+-type ATPase conta 26.6 1.6E+02 0.0034 28.6 5.6 111 61-175 330-470 (752)
215 COG2179 Predicted hydrolase of 25.2 3.7E+02 0.008 21.8 7.2 91 74-178 48-140 (175)
216 PF13632 Glyco_trans_2_3: Glyc 25.1 1.3E+02 0.0029 23.2 4.4 24 140-164 1-24 (193)
217 cd08351 ChaP_like ChaP, an enz 24.2 2.7E+02 0.0058 19.8 6.0 54 151-205 66-121 (123)
218 COG1412 Uncharacterized protei 23.8 1.9E+02 0.0042 22.3 4.8 40 73-115 83-122 (136)
219 PF05991 NYN_YacP: YacP-like N 22.7 1.9E+02 0.0041 22.8 4.8 38 75-114 81-118 (166)
220 COG4262 Predicted spermidine s 22.1 2.8E+02 0.006 25.7 6.1 37 138-174 399-435 (508)
221 PLN03013 cysteine synthase 21.9 5.9E+02 0.013 23.6 8.4 74 100-174 211-288 (429)
222 cd08355 Glo_EDI_BRP_like_14 Th 21.6 2.6E+02 0.0055 19.7 5.0 45 155-205 78-122 (122)
223 PRK10669 putative cation:proto 21.4 4.5E+02 0.0098 24.8 7.8 69 71-148 423-492 (558)
224 KOG0062 ATPase component of AB 21.3 4.8E+02 0.01 25.1 7.6 75 98-174 458-536 (582)
225 TIGR00639 PurN phosphoribosylg 21.1 4.5E+02 0.0097 21.2 9.4 82 75-159 12-100 (190)
226 PF05337 CSF-1: Macrophage col 20.8 33 0.00071 29.8 0.0 28 19-46 226-254 (285)
227 PF00746 Gram_pos_anchor: Gram 20.5 33 0.00073 20.1 0.0 19 24-43 21-39 (39)
228 TIGR03065 srtB_sig_QVPTGV sort 20.3 35 0.00076 19.3 0.1 13 32-44 19-31 (32)
229 cd09011 Glo_EDI_BRP_like_23 Th 20.0 2.5E+02 0.0053 19.8 4.6 49 151-204 70-118 (120)
No 1
>PLN02917 CMP-KDO synthetase
Probab=100.00 E-value=3.5e-39 Score=279.85 Aligned_cols=206 Identities=91% Similarity=1.347 Sum_probs=179.6
Q ss_pred CCCCCCCCCCchhHHHHHHhhcchhhhhhceeehcccCCCCCCcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHH
Q 028257 6 ICSPSESSSSTKSWIVHGIVAGAAIAVAVGARAYLGRSKNFRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSK 85 (211)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~ 85 (211)
..+.|.+++|||+||+|||++|++++.++|+-.|++|.++..|++.+||||+|.|+||++|+|++++|+|||+|+++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aIIpA~G~SsR~~~K~L~~i~GkPLL~~vi~~a~ 83 (293)
T PLN02917 4 SSSSSSSSSSTKSWIVHGIVAGAAIAAAIGAGAYLRRSRKFRSRVVGIIPARFASSRFEGKPLVHILGKPMIQRTWERAK 83 (293)
T ss_pred ccCCccccccchhHHhhhhcccccceeeccCchhhhhccccCCcEEEEEecCCCCCCCCCCCeeeECCEEHHHHHHHHHH
Confidence 34556677789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh
Q 028257 86 LATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 165 (211)
Q Consensus 86 ~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~ 165 (211)
+++.++.|||+++++++.+++.+++++++.+++..++++.++..|++.+..+.|++++++||+||+++++|+++++.+.+
T Consensus 84 ~~~~~~~VVV~~~~e~I~~~~~~~~v~vi~~~~~~~~GT~~~~~a~~~l~~~~d~Vlil~gD~PlI~~~tI~~li~~~~~ 163 (293)
T PLN02917 84 LATTLDHIVVATDDERIAECCRGFGADVIMTSESCRNGTERCNEALKKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 163 (293)
T ss_pred cCCCCCEEEEECChHHHHHHHHHcCCEEEeCCcccCCchHHHHHHHHhccCCCCEEEEecCCcCCCCHHHHHHHHHHHHh
Confidence 87777888888888999888887888887776666788888888888875446899999999999999999999998876
Q ss_pred CCCeEEEEeeeeCCCCCCCCCCCeEEEeCCCccEEeeecCCCCCCC
Q 028257 166 APDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211 (211)
Q Consensus 166 ~~d~vv~v~~~~~~~~~~~d~~~~~~v~~~~~~~~~~~~~~~~~~~ 211 (211)
+.+.+++..+..++.+...+..+++++.+.+|+++||||+++|+.|
T Consensus 164 ~~~~iv~t~~~~~~~~~~~~ygrv~vv~~~~g~alyfsr~~Ipe~k 209 (293)
T PLN02917 164 APDAVFSTAVTSLKPEDASDPNRVKCVVDNQGYAIYFSRGLIPYNK 209 (293)
T ss_pred cCCceEEEEeeecCHHHhcCCCceEEEECCCCeEEEeecCcCCcCC
Confidence 6677776666656556677888899999999999999999887653
No 2
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.95 E-value=7.5e-27 Score=192.08 Aligned_cols=162 Identities=50% Similarity=0.800 Sum_probs=148.0
Q ss_pred CCcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCCChHH
Q 028257 47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTER 126 (211)
Q Consensus 47 ~m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g~~~s 126 (211)
+|+..+||||+=.||||++|+|..++|+||++|+.+++.++ +.+++||.||++++.+.+..+|.+++..+.+...|+++
T Consensus 1 ~~~~~viIPAR~~STRLpgKPLadI~GkpmI~rV~e~a~~s-~~~rvvVATDde~I~~av~~~G~~avmT~~~h~SGTdR 79 (247)
T COG1212 1 TMKFVVIIPARLASTRLPGKPLADIGGKPMIVRVAERALKS-GADRVVVATDDERIAEAVQAFGGEAVMTSKDHQSGTDR 79 (247)
T ss_pred CCceEEEEecchhcccCCCCchhhhCCchHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHhCCEEEecCCCCCCccHH
Confidence 47888999999999999999999999999999999999998 69999999999999999999999999998888899999
Q ss_pred HHHHHHhhc-cCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeee-CCCCCCCCCCCeEEEeCCCccEEeeec
Q 028257 127 CNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTS-LKPEDAFDPNRVKCVVDNHGYAIYFSR 204 (211)
Q Consensus 127 i~~al~~l~-~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~-~~~~~~~d~~~~~~v~~~~~~~~~~~~ 204 (211)
+..+++.+. .+.+.++=+++|.||+.++.|+.+++.+.++ ++-++.+..+ .++++.+++|.+|+|.|.+|+++||||
T Consensus 80 ~~Ev~~~l~~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~-~~~~aTl~~~i~~~ee~~nPN~VKvV~d~~g~ALYFSR 158 (247)
T COG1212 80 LAEVVEKLGLPDDEIIVNVQGDEPFIEPEVIRAVAENLENS-NADMATLAVKITDEEEAFNPNVVKVVLDKEGYALYFSR 158 (247)
T ss_pred HHHHHHhcCCCcceEEEEccCCCCCCCHHHHHHHHHHHHhC-CcceeeeeeecCCHHHhcCCCcEEEEEcCCCcEEEEEc
Confidence 999999884 3567899999999999999999999999876 5556666666 456889999999999999999999999
Q ss_pred CCCCCC
Q 028257 205 GLIPYN 210 (211)
Q Consensus 205 ~~~~~~ 210 (211)
.++||+
T Consensus 159 s~iP~~ 164 (247)
T COG1212 159 APIPYG 164 (247)
T ss_pred CCCCCc
Confidence 999997
No 3
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=99.94 E-value=5.2e-26 Score=191.94 Aligned_cols=157 Identities=48% Similarity=0.794 Sum_probs=131.6
Q ss_pred EEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCCChHHHHHHH
Q 028257 52 GIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEAL 131 (211)
Q Consensus 52 aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g~~~si~~al 131 (211)
+||||+|.|+||++|+|++++|+|||+|+++++.++ .+++|+|+++++++.+.+++++++++.+.....++++++..++
T Consensus 2 ~iIpA~g~s~R~~~K~L~~l~GkPli~~~le~~~~~-~~d~VvVvt~~~~i~~~~~~~g~~~v~~~~~~~~Gt~r~~~~~ 80 (238)
T TIGR00466 2 VIIPARLASSRLPGKPLEDIFGKPMIVHVAENANES-GADRCIVATDDESVAQTCQKFGIEVCMTSKHHNSGTERLAEVV 80 (238)
T ss_pred EEEecCCCCCCCCCCeecccCCcCHHHHHHHHHHhC-CCCeEEEEeCHHHHHHHHHHcCCEEEEeCCCCCChhHHHHHHH
Confidence 799999999999999999999999999999999987 4999999999888888888888887765555678888888777
Q ss_pred Hhhc-cCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeeeC-CCCCCCCCCCeEEEeCCCccEEeeecCCCCC
Q 028257 132 QKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIPY 209 (211)
Q Consensus 132 ~~l~-~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~~-~~~~~~d~~~~~~v~~~~~~~~~~~~~~~~~ 209 (211)
+.+. .+.|+++++++|+||++++.|+++++.+.+. +.-+++...++ ++++..|++.+|++.+.+|+++||||.++|+
T Consensus 81 ~~l~~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~-~~~~a~~~~~~~d~~~~~~p~~vk~v~~~~g~alyfsr~~ip~ 159 (238)
T TIGR00466 81 EKLALKDDERIVNLQGDEPFIPKEIIRQVADNLATK-NVPMAALAVKIHDAEEAFNPNAVKVVLDSQGYALYFSRSLIPF 159 (238)
T ss_pred HHhCCCCCCEEEEEcCCcCcCCHHHHHHHHHHHhcC-CCCEEEEeeecCCHHHccCCCceEEEeCCCCeEEEecCCCCCC
Confidence 7652 2468999999999999999999999998532 22334445554 4467888999999989999999999998877
Q ss_pred C
Q 028257 210 N 210 (211)
Q Consensus 210 ~ 210 (211)
+
T Consensus 160 ~ 160 (238)
T TIGR00466 160 D 160 (238)
T ss_pred C
Confidence 5
No 4
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.92 E-value=6.9e-24 Score=178.26 Aligned_cols=159 Identities=52% Similarity=0.812 Sum_probs=127.1
Q ss_pred CcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCCChHHH
Q 028257 48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERC 127 (211)
Q Consensus 48 m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g~~~si 127 (211)
|++.+||||||+|+||++|+|++++|+|||+|+++++.++ ++++|+|+++++.+.+++.+++++++...++..+++.++
T Consensus 1 m~~~~iIlA~g~S~R~~~K~Ll~i~Gkpll~~~l~~l~~~-~i~~ivvv~~~~~i~~~~~~~~~~v~~~~~~~~~gt~~~ 79 (245)
T PRK05450 1 MKFLIIIPARYASTRLPGKPLADIGGKPMIVRVYERASKA-GADRVVVATDDERIADAVEAFGGEVVMTSPDHPSGTDRI 79 (245)
T ss_pred CceEEEEecCCCCCCCCCCcccccCCcCHHHHHHHHHHhc-CCCeEEEECCcHHHHHHHHHcCCEEEECCCcCCCchHHH
Confidence 7899999999999999999999999999999999999988 799999999988888877777888766554555566666
Q ss_pred HHHHHhhc-cCCCEEEEEcCCCcCCCHHHHHHHHHHHHhC-CCeEEEEeeeeC-CCCCCCCCCCeEEEeCCCccEEeeec
Q 028257 128 NEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSR 204 (211)
Q Consensus 128 ~~al~~l~-~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~-~d~vv~v~~~~~-~~~~~~d~~~~~~v~~~~~~~~~~~~ 204 (211)
..++..+. .+.+++++++||+||++++.++++++.+.++ .+.++.+ .+. ++....+++.++++.|.+|++.+|++
T Consensus 80 ~~~~~~~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~d~~g~v~~~~e 157 (245)
T PRK05450 80 AEAAAKLGLADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLA--VPIHDAEEAFNPNVVKVVLDADGRALYFSR 157 (245)
T ss_pred HHHHHhcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeee--eecCCHHHhcCcCCCEEEeCCCCcEEEecC
Confidence 66666552 2357899999999999999999999988654 3433332 232 22334577788999999999999999
Q ss_pred CCCCC
Q 028257 205 GLIPY 209 (211)
Q Consensus 205 ~~~~~ 209 (211)
++.+.
T Consensus 158 ~~~~~ 162 (245)
T PRK05450 158 APIPY 162 (245)
T ss_pred CCCCC
Confidence 98643
No 5
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.91 E-value=3.8e-23 Score=173.06 Aligned_cols=156 Identities=44% Similarity=0.753 Sum_probs=121.1
Q ss_pred CcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCCChHHH
Q 028257 48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERC 127 (211)
Q Consensus 48 m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g~~~si 127 (211)
|++.+||||||+|+||++|+|++++|+|||+|+++++.+++.+++|+|+++++++.+++++++++++..++...+++.++
T Consensus 1 m~~~aiIlA~g~s~R~~~K~l~~i~GkPli~~~i~~l~~~~~~~~ivv~t~~~~i~~~~~~~~~~v~~~~~~~~~g~~~~ 80 (238)
T PRK13368 1 MKVVVVIPARYGSSRLPGKPLLDILGKPMIQHVYERAAQAAGVEEVYVATDDQRIEDAVEAFGGKVVMTSDDHLSGTDRL 80 (238)
T ss_pred CcEEEEEecCCCCCCCCCCccCccCCcCHHHHHHHHHHhcCCCCeEEEECChHHHHHHHHHcCCeEEecCccCCCccHHH
Confidence 57899999999999999999999999999999999999986799999999988888888888888877665666677778
Q ss_pred HHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeeeCCCC-CCCCCCCeEEEeCCCccEEeeecC
Q 028257 128 NEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPE-DAFDPNRVKCVVDNHGYAIYFSRG 205 (211)
Q Consensus 128 ~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~~~~~-~~~d~~~~~~v~~~~~~~~~~~~~ 205 (211)
..+++.+ +.|++++++||+||++++.++++++.+.++....+.....+.... ...++...+++.+++|.+..|.++
T Consensus 81 ~~a~~~~--~~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~v~~~~~~ 157 (238)
T PRK13368 81 AEVMLKI--EADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLCAPISTEEEFESPNVVKVVVDKNGDALYFSRS 157 (238)
T ss_pred HHHHHhC--CCCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEEEEcCCHHHhcCcCCCEEEECCCCCEEEeeCC
Confidence 8888876 368999999999999999999999988644322222222222211 111244444566777888888854
No 6
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=99.91 E-value=1e-22 Score=170.51 Aligned_cols=159 Identities=54% Similarity=0.863 Sum_probs=122.9
Q ss_pred cEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCCChHHHH
Q 028257 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCN 128 (211)
Q Consensus 49 ~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g~~~si~ 128 (211)
++.+||||||+|+||++|+|++++|+|||+|+++++.+++++++|+|+++++.+.+++.++++++++.++...+++.++.
T Consensus 1 ~~~~iIlA~g~s~R~~~K~l~~i~gkpll~~~l~~l~~~~~i~~ivvv~~~~~i~~~~~~~~~~~~~~~~~~~~gt~~~~ 80 (239)
T cd02517 1 KVIVVIPARYASSRLPGKPLADIAGKPMIQHVYERAKKAKGLDEVVVATDDERIADAVESFGGKVVMTSPDHPSGTDRIA 80 (239)
T ss_pred CEEEEEecCCCCCCCCCCCCcccCCcCHHHHHHHHHHhCCCCCEEEEECCcHHHHHHHHHcCCEEEEcCcccCchhHHHH
Confidence 36799999999999999999999999999999999998756999999999888888887778887766544455666777
Q ss_pred HHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeeeCC-CCCCCCCCCeEEEeCCCccEEeeecCCC
Q 028257 129 EALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRGLI 207 (211)
Q Consensus 129 ~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~~~-~~~~~d~~~~~~v~~~~~~~~~~~~~~~ 207 (211)
.+++.+....|++++++||+||+++++++.+++.+.++++..+++...++. +....+...++++.+.+|.+.+|++++.
T Consensus 81 ~~~~~~~~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~ 160 (239)
T cd02517 81 EVAEKLDADDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATPISDEEELFNPNVVKVVLDKDGYALYFSRSPI 160 (239)
T ss_pred HHHHhcCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEEcCCHHHccCCCCCEEEECCCCCEEEecCCCC
Confidence 777776422488999999999999999999999886442332333333432 2111244567788898999999997643
No 7
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=99.90 E-value=3.2e-23 Score=173.16 Aligned_cols=145 Identities=25% Similarity=0.395 Sum_probs=111.7
Q ss_pred EEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHH---HHHHHHHcCCeEeeCCcccCCC
Q 028257 50 VVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEK---IAECCQQFGADVIMTSESCRNG 123 (211)
Q Consensus 50 i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~---i~~~~~~~~v~vi~~~~~~~g~ 123 (211)
+.+||+|||.|+||| +|++++++|+|+|.|+++++.+.+.+++|+|++++++ ++++..+..+.++. ||
T Consensus 1 V~aIilAaG~G~R~g~~~pKQf~~l~Gkpvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~~~v~iv~------GG 74 (221)
T PF01128_consen 1 VAAIILAAGSGSRMGSGIPKQFLELGGKPVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSKKKVKIVE------GG 74 (221)
T ss_dssp EEEEEEESS-STCCTSSS-GGGSEETTEEHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHHTTEEEEE--------
T ss_pred CEEEEeCCccchhcCcCCCCeeeEECCeEeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcCCCEEEec------CC
Confidence 469999999999997 5999999999999999999999999999999997654 33444442333222 33
Q ss_pred ---hHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEEeeee-C---CC----CCCCCCCCeEE
Q 028257 124 ---TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTS-L---KP----EDAFDPNRVKC 191 (211)
Q Consensus 124 ---~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v~~~~-~---~~----~~~~d~~~~~~ 191 (211)
.+|+++||+.+....|+|++|++.+||++++.|+++++.+.+ +..++.+.++++ + +. ..++||+.++.
T Consensus 75 ~tR~~SV~ngL~~l~~~~d~VlIHDaaRPfv~~~~i~~~i~~~~~~~~aai~~~p~~DTik~v~~~~~v~~tldR~~l~~ 154 (221)
T PF01128_consen 75 ATRQESVYNGLKALAEDCDIVLIHDAARPFVSPELIDRVIEAAREGHGAAIPALPVTDTIKRVDDDGFVTETLDRSKLWA 154 (221)
T ss_dssp SSHHHHHHHHHHCHHCTSSEEEEEETTSTT--HHHHHHHHHHHHHTCSEEEEEEE-SSEEEEESTTSBEEEEETGGGEEE
T ss_pred hhHHHHHHHHHHHHHcCCCEEEEEccccCCCCHHHHHHHHHHHHhhcCcEEEEEeccccEEEEecCCcccccCCHHHeee
Confidence 368999999987556899999999999999999999999987 444455555555 2 21 25899999999
Q ss_pred EeCCCccEE
Q 028257 192 VVDNHGYAI 200 (211)
Q Consensus 192 v~~~~~~~~ 200 (211)
+|+||+|..
T Consensus 155 ~QTPQ~F~~ 163 (221)
T PF01128_consen 155 VQTPQAFRF 163 (221)
T ss_dssp EEEEEEEEH
T ss_pred ecCCCeecH
Confidence 999999965
No 8
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=99.89 E-value=2.7e-22 Score=165.53 Aligned_cols=160 Identities=38% Similarity=0.637 Sum_probs=130.5
Q ss_pred EEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCCChHHHHHH
Q 028257 51 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEA 130 (211)
Q Consensus 51 ~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g~~~si~~a 130 (211)
.|||||+|+|+|+|+|++++++|+|||+|+++++++++.+++|||+|+++++.++++++++.++.+++...+.+++...+
T Consensus 1 iaiIpAR~gS~rlp~Knl~~l~gkpLi~~~i~~a~~s~~~d~IvVaTd~~~i~~~~~~~g~~v~~~~~~~~~~~~r~~~~ 80 (217)
T PF02348_consen 1 IAIIPARGGSKRLPGKNLKPLGGKPLIEYVIERAKQSKLIDEIVVATDDEEIDDIAEEYGAKVIFRRGSLADDTDRFIEA 80 (217)
T ss_dssp EEEEEE-SSSSSSTTGGGSEETTEEHHHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHTTSEEEE--TTSSSHHHHHHHH
T ss_pred CEEEecCCCCCCCCcchhhHhCCccHHHHHHHHHHhCCCCCeEEEeCCCHHHHHHHHHcCCeeEEcChhhcCCcccHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999988888888888888888
Q ss_pred HHhhcc-CCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeeeC-CCCCCCCCCCeEEEeCCCccEEeeecCCCC
Q 028257 131 LQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIP 208 (211)
Q Consensus 131 l~~l~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~~-~~~~~~d~~~~~~v~~~~~~~~~~~~~~~~ 208 (211)
+.+... ..+.++.+.+|.||++++.++++++.+.+.....+....... ...+.++.+.++.+.+.++...+|++...+
T Consensus 81 ~~~~~~~~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (217)
T PF02348_consen 81 IKHFLADDEDIVVRLQGDSPLLDPTSIDRAIEDIREANEDYISNLVDPVGSSVEIFNFNPLKVLFDDDGLELYFSEHVIP 160 (217)
T ss_dssp HHHHTCSTTSEEEEESTTETT--HHHHHHHHHHHHHSTTSSEEEEEEEECSHHHHTSTTSTEEEECTTSBEEEEESSESS
T ss_pred HHHhhhhHHhhccccCCeeeECCHHHHHHHHHHHhcCchhhhccccccccchhhcccccceEEEeccccchhhcccCCCc
Confidence 877642 234999999999999999999999999764332222222222 234567888999999999999999999888
Q ss_pred CC
Q 028257 209 YN 210 (211)
Q Consensus 209 ~~ 210 (211)
|.
T Consensus 161 ~~ 162 (217)
T PF02348_consen 161 YI 162 (217)
T ss_dssp EC
T ss_pred cc
Confidence 75
No 9
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=99.89 E-value=2.2e-22 Score=171.39 Aligned_cols=152 Identities=17% Similarity=0.221 Sum_probs=118.3
Q ss_pred CcEEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHH---HHHHHHHcCCeEeeCCcccC
Q 028257 48 SRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEK---IAECCQQFGADVIMTSESCR 121 (211)
Q Consensus 48 m~i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~---i~~~~~~~~v~vi~~~~~~~ 121 (211)
+++.+||||||.|+||+ +|+|++++|+|+|+|+++++.....+++|+|+++++. ++...+.++..+.+.. ...
T Consensus 23 ~~i~aIILAAG~gsRmg~~~pKqll~l~Gkpll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~~~~~~i~~v~-gg~ 101 (252)
T PLN02728 23 KSVSVILLAGGVGKRMGANMPKQYLPLLGQPIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVENIDVPLKFAL-PGK 101 (252)
T ss_pred CceEEEEEcccccccCCCCCCcceeEECCeEHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHHhcCCceEEcC-CCC
Confidence 35789999999999997 6999999999999999999998667999999998543 2233344554443322 122
Q ss_pred CChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeee-CC---C----CCCCCCCCeEEEe
Q 028257 122 NGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTS-LK---P----EDAFDPNRVKCVV 193 (211)
Q Consensus 122 g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~-~~---~----~~~~d~~~~~~v~ 193 (211)
+...++++|++.+..+.+.|+++++++||++++.|+++++...++..++.++++++ ++ . ..++||+.++.+|
T Consensus 102 ~r~~SV~~gl~~l~~~~~~VlihDaarP~vs~~~i~~li~~~~~~ga~i~~~~~~dtik~v~~~~~v~~t~~R~~l~~~Q 181 (252)
T PLN02728 102 ERQDSVFNGLQEVDANSELVCIHDSARPLVTSADIEKVLKDAAVHGAAVLGVPVKATIKEANSDSFVVKTLDRKRLWEMQ 181 (252)
T ss_pred chHHHHHHHHHhccCCCCEEEEecCcCCCCCHHHHHHHHHHHhhCCeEEEeecchhhEEEecCCCceeeccChHHeEEEe
Confidence 34678999999885456789999999999999999999998876655555666555 32 1 2589999999999
Q ss_pred CCCccEE
Q 028257 194 DNHGYAI 200 (211)
Q Consensus 194 ~~~~~~~ 200 (211)
+||+|..
T Consensus 182 TPQ~F~~ 188 (252)
T PLN02728 182 TPQVIKP 188 (252)
T ss_pred CCccchH
Confidence 9999954
No 10
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=99.87 E-value=1.3e-21 Score=163.67 Aligned_cols=151 Identities=15% Similarity=0.258 Sum_probs=113.4
Q ss_pred CcEEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHH---HHHHHcCCe---EeeCCc
Q 028257 48 SRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIA---ECCQQFGAD---VIMTSE 118 (211)
Q Consensus 48 m~i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~---~~~~~~~v~---vi~~~~ 118 (211)
|++.+||||||.|+||+ +|+|++++|+|||+|+++++..++.+++++|++++++.. +.+++++.. +....
T Consensus 1 ~~~~~iIlAaG~g~R~g~~~~K~l~~l~gkpll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~~~~~~~~~~~v~- 79 (230)
T PRK13385 1 MNYELIFLAAGQGKRMNAPLNKMWLDLVGEPIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLMKQLNVADQRVEVVK- 79 (230)
T ss_pred CceEEEEECCeeccccCCCCCcceeEECCeEHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHHHhcCcCCCceEEcC-
Confidence 46789999999999995 699999999999999999999876799999999865533 344555431 11111
Q ss_pred ccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeee-CC---C---CCCCCCCCeEE
Q 028257 119 SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTS-LK---P---EDAFDPNRVKC 191 (211)
Q Consensus 119 ~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~-~~---~---~~~~d~~~~~~ 191 (211)
...+...++..|++.+. +.+.+++++||+||++++.++++++.+.++...+.....++ +. . ..+++|+.++.
T Consensus 80 ~g~~r~~sv~~gl~~~~-~~d~vli~~~d~P~i~~~~i~~li~~~~~~~~~~~~~~~~dti~~~~~~~~~~~i~r~~~~~ 158 (230)
T PRK13385 80 GGTERQESVAAGLDRIG-NEDVILVHDGARPFLTQDIIDRLLEGVAKYGAAICAVEVKDTVKRVKDKQVIETVDRNELWQ 158 (230)
T ss_pred CCchHHHHHHHHHHhcc-CCCeEEEccCCCCCCCHHHHHHHHHHHhhCCcEEEEEeccceEEEEcCCeeEeccCHHHHhh
Confidence 11233578899999874 35789999999999999999999999876544444444433 21 1 24578889999
Q ss_pred EeCCCccEE
Q 028257 192 VVDNHGYAI 200 (211)
Q Consensus 192 v~~~~~~~~ 200 (211)
+|+||+|..
T Consensus 159 ~qtpq~f~~ 167 (230)
T PRK13385 159 GQTPQAFEL 167 (230)
T ss_pred hcCCceeeH
Confidence 999999964
No 11
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=99.87 E-value=3.3e-21 Score=172.63 Aligned_cols=152 Identities=23% Similarity=0.295 Sum_probs=114.1
Q ss_pred CCCcEEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHc-CCe-EeeCCccc
Q 028257 46 FRSRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF-GAD-VIMTSESC 120 (211)
Q Consensus 46 ~~m~i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~-~v~-vi~~~~~~ 120 (211)
.||++.+||||||.|+||+ +|++++++|+|||+|+++++.+.+.+++|+|+++++......... +.. +.... ..
T Consensus 2 ~mm~v~aIILAAG~GsRmg~~~pKqll~l~GkPll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~~~~~~v~~v~-gG 80 (378)
T PRK09382 2 LMSDISLVIVAAGRSTRFSAEVKKQWLRIGGKPLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKALPEIKFVTLVT-GG 80 (378)
T ss_pred CCCcceEEEECCCCCccCCCCCCeeEEEECCeeHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhcccCCeEEEeC-CC
Confidence 4688999999999999996 699999999999999999999887789999999765433221111 111 11111 11
Q ss_pred CCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeee-CCC-CCCCCCCCeEEEeCCCcc
Q 028257 121 RNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTS-LKP-EDAFDPNRVKCVVDNHGY 198 (211)
Q Consensus 121 ~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~-~~~-~~~~d~~~~~~v~~~~~~ 198 (211)
.+...++++|++.+. .|++++++||+||++++.++++++.+.++...+.+.++++ ++. ..++||+.++.+|+||+|
T Consensus 81 ~~r~~SV~~gL~~l~--~d~VLVhdadrPfv~~e~I~~li~~~~~~~a~i~~~pv~Dtik~~~~tldR~~l~~~QTPQ~f 158 (378)
T PRK09382 81 ATRQESVRNALEALD--SEYVLIHDAARPFVPKELIDRLIEALDKADCVLPALPVADTLKRANETVDREGLKLIQTPQLS 158 (378)
T ss_pred chHHHHHHHHHHhcC--CCeEEEeeccccCCCHHHHHHHHHHhhcCCeEEEEEEeccCcEEeeeEcCcccEEEEECCCCC
Confidence 223568999999884 4899999999999999999999998876533344444455 332 348999999999999999
Q ss_pred EE
Q 028257 199 AI 200 (211)
Q Consensus 199 ~~ 200 (211)
..
T Consensus 159 ~~ 160 (378)
T PRK09382 159 RT 160 (378)
T ss_pred CH
Confidence 53
No 12
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=99.87 E-value=2.5e-21 Score=152.50 Aligned_cols=120 Identities=31% Similarity=0.468 Sum_probs=102.8
Q ss_pred EEEecCCCCCCCC-CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCCChHHHHHH
Q 028257 52 GIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEA 130 (211)
Q Consensus 52 aIIlA~G~ssRlg-~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g~~~si~~a 130 (211)
+||||||.|+||+ +|++++++|+|||+|+++++.+. ++++|+|+++++++...+...+++++.++.+..|+..++..|
T Consensus 1 ~vILa~G~s~Rmg~~K~l~~i~g~~li~~~l~~l~~~-~~~~Ivvv~~~~~~~~~~~~~~~~~v~~~~~~~G~~~sl~~a 79 (160)
T PF12804_consen 1 AVILAAGKSSRMGGPKALLPIGGKPLIERVLEALREA-GVDDIVVVTGEEEIYEYLERYGIKVVVDPEPGQGPLASLLAA 79 (160)
T ss_dssp EEEEESSSCGGGTSCGGGSEETTEEHHHHHHHHHHHH-TESEEEEEESTHHHHHHHTTTTSEEEE-STSSCSHHHHHHHH
T ss_pred CEEECCcCcccCCCCccceeECCccHHHHHHHHhhcc-CCceEEEecChHHHHHHHhccCceEEEeccccCChHHHHHHH
Confidence 6999999999998 69999999999999999999998 489999999988888777777899888776667788999999
Q ss_pred HHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEE
Q 028257 131 LQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFST 173 (211)
Q Consensus 131 l~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v 173 (211)
+..+. ..+++++++||+||+++++++.+++.+.+ ..+.+++.
T Consensus 80 ~~~~~-~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~ 122 (160)
T PF12804_consen 80 LSQLP-SSEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVPV 122 (160)
T ss_dssp HHTST-TSSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEE
T ss_pred HHhcc-cCCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEEE
Confidence 99874 57899999999999999999999999864 44555443
No 13
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=99.86 E-value=3e-21 Score=161.50 Aligned_cols=150 Identities=22% Similarity=0.310 Sum_probs=116.5
Q ss_pred CCcEEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHH----cCCeEeeCCcc
Q 028257 47 RSRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ----FGADVIMTSES 119 (211)
Q Consensus 47 ~m~i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~----~~v~vi~~~~~ 119 (211)
+|++.+||||||.|+||+ +|++++++|+||++|+++.+..++.+++|||+++.++...+.+. .+-.+..
T Consensus 2 ~~~~~~vilAaG~G~R~~~~~pKq~l~l~g~pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~~~~~~v~~---- 77 (230)
T COG1211 2 RMMVSAVILAAGFGSRMGNPVPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPKLSADKRVEV---- 77 (230)
T ss_pred CceEEEEEEcCccccccCCCCCceEEEECCEEehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhhhccCCeEEE----
Confidence 467889999999999997 59999999999999999999999999999999986443322221 1112211
Q ss_pred cCCC---hHHHHHHHHhhcc-CCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeee-CC---C----CCCCCCC
Q 028257 120 CRNG---TERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTS-LK---P----EDAFDPN 187 (211)
Q Consensus 120 ~~g~---~~si~~al~~l~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~-~~---~----~~~~d~~ 187 (211)
..|| .+|+++||+.+.. ..++||+|++.+||++.+.|+++++...+...++.+.++++ ++ . .++.||+
T Consensus 78 v~GG~~R~~SV~~gL~~~~~~~~~~VlvHDaaRPf~~~~~i~~li~~~~~~~aai~alpv~DTik~~~~~~~i~~t~~R~ 157 (230)
T COG1211 78 VKGGATRQESVYNGLQALSKYDSDWVLVHDAARPFLTPKLIKRLIELADKYGAAILALPVTDTLKRVDADGNIVETVDRS 157 (230)
T ss_pred ecCCccHHHHHHHHHHHhhccCCCEEEEeccccCCCCHHHHHHHHHhhccCCcEEEEeeccCcEEEecCCCCeeeccChh
Confidence 2244 3678999998862 47999999999999999999999955555445555666665 32 1 3799999
Q ss_pred CeEEEeCCCccEE
Q 028257 188 RVKCVVDNHGYAI 200 (211)
Q Consensus 188 ~~~~v~~~~~~~~ 200 (211)
.+..+|+||+|..
T Consensus 158 ~l~~~QTPQ~F~~ 170 (230)
T COG1211 158 GLWAAQTPQAFRL 170 (230)
T ss_pred hhhhhhCCccccH
Confidence 9999999999965
No 14
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=99.86 E-value=2.5e-20 Score=153.97 Aligned_cols=127 Identities=35% Similarity=0.529 Sum_probs=103.3
Q ss_pred cEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCe-EeeCCccc----CCC
Q 028257 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD-VIMTSESC----RNG 123 (211)
Q Consensus 49 ~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~-vi~~~~~~----~g~ 123 (211)
++.+||||||.|+||++|++++++|+|||+|+++++.+++.+++|+|+++++++.+.+.++++. ++.++... .+.
T Consensus 1 ~~~~iIlA~G~s~R~~~K~l~~l~Gkpll~~~l~~l~~~~~~~~IvV~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (223)
T cd02513 1 KILAIIPARGGSKGIPGKNIRPLGGKPLIAWTIEAALESKLFDRVVVSTDDEEIAEVARKYGAEVPFLRPAELATDTASS 80 (223)
T ss_pred CeEEEEecCCCCCCCCCcccchhCCccHHHHHHHHHHhCCCCCEEEEECCcHHHHHHHHHhCCCceeeCChHHCCCCCCc
Confidence 4679999999999999999999999999999999999887789999999888888887777763 33333222 244
Q ss_pred hHHHHHHHHhhcc---CCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEEee
Q 028257 124 TERCNEALQKLEK---KYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAV 175 (211)
Q Consensus 124 ~~si~~al~~l~~---~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v~~ 175 (211)
..++..+++.+.. +.|++++++||+||+++++++++++.+.+ +.++++++..
T Consensus 81 ~~~i~~~l~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~ 136 (223)
T cd02513 81 IDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTE 136 (223)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 5778888887742 25899999999999999999999999864 4577777654
No 15
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=99.85 E-value=2.8e-20 Score=155.53 Aligned_cols=125 Identities=31% Similarity=0.470 Sum_probs=107.4
Q ss_pred EEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEe-eCCccc----CCChHH
Q 028257 52 GIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVI-MTSESC----RNGTER 126 (211)
Q Consensus 52 aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi-~~~~~~----~g~~~s 126 (211)
+||||+|.|+||++|++++++|+||+.|+++++.+++.+++|+|+++++++.++++++++.+. .+++.. .+..++
T Consensus 2 aiIpArG~Skr~~~Knl~~l~GkpLi~~ti~~a~~s~~~d~IvVstd~~~i~~~a~~~g~~v~~~r~~~l~~d~~~~~~s 81 (222)
T TIGR03584 2 AIIPARGGSKRIPRKNIKPFCGKPMIAYSIEAALNSGLFDKVVVSTDDEEIAEVAKSYGASVPFLRPKELADDFTGTAPV 81 (222)
T ss_pred EEEccCCCCCCCCCccchhcCCcCHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHcCCEeEEeChHHHcCCCCCchHH
Confidence 799999999999999999999999999999999999889999999999999999998998764 444322 344578
Q ss_pred HHHHHHhhc--cCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEEeee
Q 028257 127 CNEALQKLE--KKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVT 176 (211)
Q Consensus 127 i~~al~~l~--~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v~~~ 176 (211)
+..+++.+. .+.|.++++++|+||+++++|+++++.+.+ ++|+++++...
T Consensus 82 i~~~l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~~ 134 (222)
T TIGR03584 82 VKHAIEELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTSF 134 (222)
T ss_pred HHHHHHHHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeecc
Confidence 899998774 246899999999999999999999999964 47888887653
No 16
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.85 E-value=3.5e-20 Score=152.39 Aligned_cols=118 Identities=18% Similarity=0.227 Sum_probs=96.7
Q ss_pred CCCCCcEEEEEecCCCCCCCC-CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCC
Q 028257 44 KNFRSRVVGIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRN 122 (211)
Q Consensus 44 ~~~~m~i~aIIlA~G~ssRlg-~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g 122 (211)
+...|++.+||||||.|+||| +|++++++|+|||+|+++++.. .+++|+|++++.+........++.++.++....|
T Consensus 2 ~~~~~~~~~vILAgG~s~Rmg~~K~ll~~~g~~ll~~~i~~l~~--~~~~ivvv~~~~~~~~~~~~~~~~~i~~~~~~~G 79 (200)
T PRK02726 2 KTVKNNLVALILAGGKSSRMGQDKALLPWQGVPLLQRVARIAAA--CADEVYIITPWPERYQSLLPPGCHWLREPPPSQG 79 (200)
T ss_pred CCcCCCceEEEEcCCCcccCCCCceeeEECCEeHHHHHHHHHHh--hCCEEEEECCCHHHHHhhccCCCeEecCCCCCCC
Confidence 345678999999999999998 5999999999999999999985 3789999987544322222235666666555578
Q ss_pred ChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh
Q 028257 123 GTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 165 (211)
Q Consensus 123 ~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~ 165 (211)
+..+++.|++++. .+++++++||+||+++++++.+++.+..
T Consensus 80 ~~~si~~~l~~~~--~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 120 (200)
T PRK02726 80 PLVAFAQGLPQIK--TEWVLLLACDLPRLTVDVLQEWLQQLEN 120 (200)
T ss_pred hHHHHHHHHHhCC--CCcEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence 8899999999884 5899999999999999999999998754
No 17
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.84 E-value=5.1e-20 Score=147.38 Aligned_cols=116 Identities=22% Similarity=0.336 Sum_probs=93.7
Q ss_pred EEEEEecCCCCCCCC-CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcH--HHHHHHHHcCCeEeeCCcccCCChHH
Q 028257 50 VVGIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDE--KIAECCQQFGADVIMTSESCRNGTER 126 (211)
Q Consensus 50 i~aIIlA~G~ssRlg-~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e--~i~~~~~~~~v~vi~~~~~~~g~~~s 126 (211)
+.+||||||.|+||+ +|++++++|+||++|+++++... .+++|+|+++++ .+.+.+..+++.++..+....|+..+
T Consensus 1 ~~~vIlAgG~s~R~g~~K~l~~~~g~~li~~~i~~l~~~-~~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 79 (186)
T cd04182 1 IAAIILAAGRSSRMGGNKLLLPLDGKPLLRHALDAALAA-GLSRVIVVLGAEADAVRAALAGLPVVVVINPDWEEGMSSS 79 (186)
T ss_pred CeEEEECCCCCCCCCCCceeCeeCCeeHHHHHHHHHHhC-CCCcEEEECCCcHHHHHHHhcCCCeEEEeCCChhhCHHHH
Confidence 368999999999998 69999999999999999999986 589999998653 33333344455555554444567788
Q ss_pred HHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhC
Q 028257 127 CNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA 166 (211)
Q Consensus 127 i~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~ 166 (211)
+..|++.+....|++++++||+||++++.++.+++.+.++
T Consensus 80 i~~al~~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~ 119 (186)
T cd04182 80 LAAGLEALPADADAVLILLADQPLVTAETLRALIDAFRED 119 (186)
T ss_pred HHHHHHhccccCCEEEEEeCCCCCCCHHHHHHHHHHHHhC
Confidence 9999998743368999999999999999999999988643
No 18
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=99.84 E-value=5.7e-20 Score=147.64 Aligned_cols=117 Identities=26% Similarity=0.396 Sum_probs=96.5
Q ss_pred EEEEecCCCCCCCC-CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCCChHHHHH
Q 028257 51 VGIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNE 129 (211)
Q Consensus 51 ~aIIlA~G~ssRlg-~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g~~~si~~ 129 (211)
.+||||||.|+||| +|++++++|+|||+|+++++... +++|+|+++.+... ...+++.++.++.+..|+..+++.
T Consensus 2 ~~iILAgG~s~Rmg~~K~ll~~~g~~ll~~~i~~l~~~--~~~iivv~~~~~~~--~~~~~~~~v~~~~~~~G~~~si~~ 77 (181)
T cd02503 2 TGVILAGGKSRRMGGDKALLELGGKPLLEHVLERLKPL--VDEVVISANRDQER--YALLGVPVIPDEPPGKGPLAGILA 77 (181)
T ss_pred cEEEECCCccccCCCCceeeEECCEEHHHHHHHHHHhh--cCEEEEECCCChHH--HhhcCCcEeeCCCCCCCCHHHHHH
Confidence 58999999999998 69999999999999999999875 78999999865433 344577777665556688899999
Q ss_pred HHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEE
Q 028257 130 ALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFST 173 (211)
Q Consensus 130 al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v 173 (211)
|++++ +.+++++++||+||+++++++.+++.+.++.+.+++.
T Consensus 78 ~l~~~--~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~ 119 (181)
T cd02503 78 ALRAA--PADWVLVLACDMPFLPPELLERLLAAAEEGADAVVPK 119 (181)
T ss_pred HHHhc--CCCeEEEEeCCcCCCCHHHHHHHHHhhccCCCEEEEe
Confidence 99987 3689999999999999999999999873334555443
No 19
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=99.83 E-value=8.9e-20 Score=152.01 Aligned_cols=150 Identities=21% Similarity=0.304 Sum_probs=108.7
Q ss_pred CCcEEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcC---CeE-eeCCcc
Q 028257 47 RSRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFG---ADV-IMTSES 119 (211)
Q Consensus 47 ~m~i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~---v~v-i~~~~~ 119 (211)
+|++.+||||||.|+||+ +|+|++++|+||++|+++++.+++.+++|+|+++++.+..+.+.+. ..+ +...
T Consensus 1 ~~~~~~iILAaG~s~R~g~~~~K~l~~~~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~~~~~~~~~~~-- 78 (227)
T PRK00155 1 MMMVYAIIPAAGKGSRMGADRPKQYLPLGGKPILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLLAKDPKVTVVAG-- 78 (227)
T ss_pred CCceEEEEEcCccccccCCCCCceeeEECCEEHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhhccCCceEEeCC--
Confidence 578899999999999995 6999999999999999999998767999999998766554433221 112 1111
Q ss_pred cCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeee----CCC----CCCCCCCCeEE
Q 028257 120 CRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTS----LKP----EDAFDPNRVKC 191 (211)
Q Consensus 120 ~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~----~~~----~~~~d~~~~~~ 191 (211)
..+...++..|++.+. +.|.+++++||+||+++++++++++.+.++...++.....+ ++. ....+|+.++.
T Consensus 79 ~~~~~~sv~~~l~~~~-~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~r~~~~~ 157 (227)
T PRK00155 79 GAERQDSVLNGLQALP-DDDWVLVHDAARPFLTPDDIDRLIEAAEETGAAILAVPVKDTIKRSDDGGGIVDTPDRSGLWA 157 (227)
T ss_pred cchHHHHHHHHHHhCC-CCCEEEEccCccCCCCHHHHHHHHHHHhhCCCEEEEEeccccEEEEcCCCceeecCChHHhee
Confidence 1134578889998874 46799999999999999999999999865432233333222 111 12345567888
Q ss_pred EeCCCccE
Q 028257 192 VVDNHGYA 199 (211)
Q Consensus 192 v~~~~~~~ 199 (211)
+|+|++|.
T Consensus 158 ~~~p~~f~ 165 (227)
T PRK00155 158 AQTPQGFR 165 (227)
T ss_pred eeCCccch
Confidence 88888774
No 20
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=99.82 E-value=1.5e-19 Score=149.45 Aligned_cols=147 Identities=18% Similarity=0.311 Sum_probs=107.0
Q ss_pred EEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCC--eE-eeCCcccCCCh
Q 028257 51 VGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGA--DV-IMTSESCRNGT 124 (211)
Q Consensus 51 ~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v--~v-i~~~~~~~g~~ 124 (211)
.+||||||.|+||+ +|+|++++|+|||+|+++++.+++.+++++|+++++....+...++. .+ +.... .+..
T Consensus 1 ~aiIlAaG~s~R~~~~~~K~l~~l~gkpll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 78 (217)
T TIGR00453 1 SAVIPAAGRGTRFGSGVPKQYLELGGRPLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLVARAVPKIVAGG--DTRQ 78 (217)
T ss_pred CEEEEcCcccccCCCCCCccEeEECCeEHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhhcCCcEEEeCCC--chHH
Confidence 37999999999997 59999999999999999999987669999999987654433322221 11 22111 1245
Q ss_pred HHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeee----CCC----CCCCCCCCeEEEeCCC
Q 028257 125 ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTS----LKP----EDAFDPNRVKCVVDNH 196 (211)
Q Consensus 125 ~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~----~~~----~~~~d~~~~~~v~~~~ 196 (211)
.+++.|++.+. +.|++++++||+||+++++++.+++.+.++...+++....+ +++ ...++|+.++.+++|+
T Consensus 79 ~sl~~~l~~~~-~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~r~~~~~~~~p~ 157 (217)
T TIGR00453 79 DSVRNGLKALK-DAEWVLVHDAARPFVPKELLDRLLEALRKAGAAILALPVADTLKRVEADGFIVETVDREGLWAAQTPQ 157 (217)
T ss_pred HHHHHHHHhCC-CCCEEEEccCccCCCCHHHHHHHHHHHhhCCcEEEeEeccceEEEEcCCCceeecCChHHeEEEeCCC
Confidence 67888998872 46899999999999999999999998865433343333322 111 2466777899999998
Q ss_pred ccEE
Q 028257 197 GYAI 200 (211)
Q Consensus 197 ~~~~ 200 (211)
.|..
T Consensus 158 ~f~~ 161 (217)
T TIGR00453 158 AFRT 161 (217)
T ss_pred cccH
Confidence 8744
No 21
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=99.82 E-value=1.4e-19 Score=149.31 Aligned_cols=148 Identities=22% Similarity=0.360 Sum_probs=108.2
Q ss_pred EEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHH--Hc--CCeE-eeCCcccCC
Q 028257 51 VGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQ--QF--GADV-IMTSESCRN 122 (211)
Q Consensus 51 ~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~--~~--~v~v-i~~~~~~~g 122 (211)
.+||||||.|+||+ +|++++++|+|||+|+++++...+.+++|+|+++++....... .+ ...+ +.... .+
T Consensus 2 ~~vILAaG~s~R~~~~~~K~l~~i~Gkpll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 79 (218)
T cd02516 2 AAIILAAGSGSRMGADIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELAKYGLSKVVKIVEGG--AT 79 (218)
T ss_pred EEEEECCcccccCCCCCCcceeEECCeEHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHHHhcccCCCeEEECCc--hH
Confidence 58999999999997 5999999999999999999998766899999998654333321 11 1122 22221 24
Q ss_pred ChHHHHHHHHhhc-cCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeee-C---CC----CCCCCCCCeEEEe
Q 028257 123 GTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTS-L---KP----EDAFDPNRVKCVV 193 (211)
Q Consensus 123 ~~~si~~al~~l~-~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~-~---~~----~~~~d~~~~~~v~ 193 (211)
...++..|++++. .+.+++++++||+||+++++++.+++.+.++...+...+..+ + +. ....+|+.++.++
T Consensus 80 ~~~si~~al~~~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~r~~~~~~~ 159 (218)
T cd02516 80 RQDSVLNGLKALPDADPDIVLIHDAARPFVSPELIDRLIDALKEYGAAIPAVPVTDTIKRVDDDGVVVETLDREKLWAAQ 159 (218)
T ss_pred HHHHHHHHHHhcccCCCCEEEEccCcCCCCCHHHHHHHHHHHhhCCcEEEEEeccccEEEecCCCceeecCChHHhhhhc
Confidence 4678999999873 247899999999999999999999999865433233333222 1 11 2467888899999
Q ss_pred CCCccEE
Q 028257 194 DNHGYAI 200 (211)
Q Consensus 194 ~~~~~~~ 200 (211)
.|+.|..
T Consensus 160 ~P~~f~~ 166 (218)
T cd02516 160 TPQAFRL 166 (218)
T ss_pred CCCcccH
Confidence 9987643
No 22
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=99.82 E-value=2e-19 Score=146.00 Aligned_cols=118 Identities=17% Similarity=0.237 Sum_probs=92.4
Q ss_pred EEEEecCCCCCCCC-CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHH--HHHHH----HHcCCeEeeCCcccCCC
Q 028257 51 VGIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEK--IAECC----QQFGADVIMTSESCRNG 123 (211)
Q Consensus 51 ~aIIlA~G~ssRlg-~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~--i~~~~----~~~~v~vi~~~~~~~g~ 123 (211)
.+||||||.|+||| +|++++++|+|||+|+++.+.+. .+++++|+++++. +..+. ...++.++..++...|+
T Consensus 2 ~~vILAgG~s~Rmg~~K~ll~~~g~~ll~~~i~~~~~~-~~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 80 (190)
T TIGR03202 2 VAIYLAAGQSRRMGENKLALPLGETTLGSASLKTALSS-RLSKVIVVIGEKYAHLSWLDPYLLADERIMLVCCRDACEGQ 80 (190)
T ss_pred eEEEEcCCccccCCCCceeceeCCccHHHHHHHHHHhC-CCCcEEEEeCCccchhhhhhHhhhcCCCeEEEECCChhhhH
Confidence 58999999999998 69999999999999999887765 5899999986432 11111 12245555555555677
Q ss_pred hHHHHHHHHhhc-cCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCe
Q 028257 124 TERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDA 169 (211)
Q Consensus 124 ~~si~~al~~l~-~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~ 169 (211)
..++..|++++. .+.|++++++||+||+++++++.+++.+.++++.
T Consensus 81 ~~si~~gl~~~~~~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~~~ 127 (190)
T TIGR03202 81 AHSLKCGLRKAEAMGADAVVILLADQPFLTADVINALLALAKRRPDD 127 (190)
T ss_pred HHHHHHHHHHhccCCCCeEEEEeCCCCCCCHHHHHHHHHHHhhCCCC
Confidence 889999999863 2468999999999999999999999988654443
No 23
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=99.81 E-value=3.9e-19 Score=143.12 Aligned_cols=115 Identities=20% Similarity=0.286 Sum_probs=92.0
Q ss_pred EEEecCCCCCCCC-CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHH---HHHHHHHcCCeEeeCCcccCCChHHH
Q 028257 52 GIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEK---IAECCQQFGADVIMTSESCRNGTERC 127 (211)
Q Consensus 52 aIIlA~G~ssRlg-~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~---i~~~~~~~~v~vi~~~~~~~g~~~si 127 (211)
+||||||.|+||+ +|++++++|+||++|+++++.+. .+++++|+++++. +..++..+++.++.++....|+..++
T Consensus 2 ~iIla~G~s~R~g~~K~ll~~~g~pll~~~i~~l~~~-~~~~iivv~~~~~~~~~~~~~~~~~v~~v~~~~~~~g~~~si 80 (188)
T TIGR03310 2 AIILAAGLSSRMGQNKLLLPYKGKTILEHVVDNALRL-FFDEVILVLGHEADELVALLANHSNITLVHNPQYAEGQSSSI 80 (188)
T ss_pred eEEECCCCcccCCCCceecccCCeeHHHHHHHHHHHc-CCCcEEEEeCCcHHHHHHHhccCCCeEEEECcChhcCHHHHH
Confidence 7999999999996 69999999999999999999987 5899988887544 33333345677766654445777889
Q ss_pred HHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCC
Q 028257 128 NEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168 (211)
Q Consensus 128 ~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d 168 (211)
..|++. ..+.+++++++||+||++++.++.+++.+....+
T Consensus 81 ~~~l~~-~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~ 120 (188)
T TIGR03310 81 KLGLEL-PVQSDGYLFLLGDQPFVTPDIIQLLLEAFALKND 120 (188)
T ss_pred HHHhcC-CCCCCEEEEEeCCcCCCCHHHHHHHHHHHHhCCC
Confidence 889882 2246899999999999999999999998764443
No 24
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=99.81 E-value=5.4e-19 Score=142.53 Aligned_cols=112 Identities=21% Similarity=0.325 Sum_probs=90.7
Q ss_pred EEEEEecCCCCCCCC--CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCC-cccCCChHH
Q 028257 50 VVGIIPARFASSRFE--GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTS-ESCRNGTER 126 (211)
Q Consensus 50 i~aIIlA~G~ssRlg--~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~-~~~~g~~~s 126 (211)
+.+||||||.|+||| +|++++++|+|||+|+++++.. .+++|||+++.+.........++.++... ....|+..+
T Consensus 1 ~~~iILAgG~s~Rmg~~~K~l~~i~g~pll~~~l~~l~~--~~~~ivv~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~s 78 (186)
T TIGR02665 1 ISGVILAGGRARRMGGRDKGLVELGGKPLIEHVLARLRP--QVSDLAISANRNPERYAQAGFGLPVVPDALADFPGPLAG 78 (186)
T ss_pred CeEEEEcCCccccCCCCCCceeEECCEEHHHHHHHHHHh--hCCEEEEEcCCCHHHHhhccCCCcEEecCCCCCCCCHHH
Confidence 368999999999997 6999999999999999999975 48999999875442222223456665543 234677889
Q ss_pred HHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh
Q 028257 127 CNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 165 (211)
Q Consensus 127 i~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~ 165 (211)
++.|++.+ +.+++++++||+||++++.++.+++.+.+
T Consensus 79 i~~al~~~--~~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 115 (186)
T TIGR02665 79 ILAGLRWA--GTDWVLTVPCDTPFLPEDLVARLAAALEA 115 (186)
T ss_pred HHHHHHhc--CCCeEEEEecCCCcCCHHHHHHHHHHhhc
Confidence 99999987 46899999999999999999999998864
No 25
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=99.81 E-value=9.2e-19 Score=142.48 Aligned_cols=118 Identities=25% Similarity=0.364 Sum_probs=94.1
Q ss_pred CCcEEEEEecCCCCCCCC--CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcc-cCCC
Q 028257 47 RSRVVGIIPARFASSRFE--GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSES-CRNG 123 (211)
Q Consensus 47 ~m~i~aIIlA~G~ssRlg--~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~-~~g~ 123 (211)
||++.+||||||.|+||+ +|++++++|+|||+|+++.+. ..+++|+|+++.+. .. ....++.++.+... ..|+
T Consensus 1 ~~~~~~vILA~G~s~Rm~~~~K~ll~~~g~~ll~~~i~~l~--~~~~~i~vv~~~~~-~~-~~~~~~~~v~~~~~~~~g~ 76 (193)
T PRK00317 1 MPPITGVILAGGRSRRMGGVDKGLQELNGKPLIQHVIERLA--PQVDEIVINANRNL-AR-YAAFGLPVIPDSLADFPGP 76 (193)
T ss_pred CCCceEEEEcCCCcccCCCCCCceeEECCEEHHHHHHHHHh--hhCCEEEEECCCCh-HH-HHhcCCcEEeCCCCCCCCC
Confidence 578899999999999994 699999999999999999998 36899999887532 22 23456666554332 3577
Q ss_pred hHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeE
Q 028257 124 TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAV 170 (211)
Q Consensus 124 ~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~v 170 (211)
..+++.|++.. +.+++++++||+||++++.++.+++.+.+....+
T Consensus 77 ~~~i~~~l~~~--~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~ 121 (193)
T PRK00317 77 LAGILAGLKQA--RTEWVLVVPCDTPFIPPDLVARLAQAAGKDDADV 121 (193)
T ss_pred HHHHHHHHHhc--CCCeEEEEcCCcCCCCHHHHHHHHHhhhcCCCcE
Confidence 88999999975 4689999999999999999999999875443333
No 26
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.80 E-value=4.9e-19 Score=144.92 Aligned_cols=131 Identities=24% Similarity=0.359 Sum_probs=113.7
Q ss_pred CCcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeE-eeCCcccCCCh-
Q 028257 47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADV-IMTSESCRNGT- 124 (211)
Q Consensus 47 ~m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~v-i~~~~~~~g~~- 124 (211)
+|+..|||||+|.|+|.++|++..++|+|||.|+|+++.+++.||+|||.+|.++|.+.++++|+++ +.+|++++...
T Consensus 1 ~~~~iAiIpAR~gSKgI~~KNi~~~~gkpLi~~~I~aA~ns~~fd~VviSsDs~~Il~~A~~ygak~~~~Rp~~LA~D~a 80 (228)
T COG1083 1 MMKNIAIIPARGGSKGIKNKNIRKFGGKPLIGYTIEAALNSKLFDKVVISSDSEEILEEAKKYGAKVFLKRPKELASDRA 80 (228)
T ss_pred CcceEEEEeccCCCCcCCccchHHhCCcchHHHHHHHHhcCCccceEEEcCCcHHHHHHHHHhCccccccCChhhccCch
Confidence 5788999999999999999999999999999999999999999999999999999999999999999 78887766543
Q ss_pred HH---HHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHH-hCCCeEEEEeeee
Q 028257 125 ER---CNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ-AAPDAVFSTAVTS 177 (211)
Q Consensus 125 ~s---i~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~-~~~d~vv~v~~~~ 177 (211)
.+ +.++++......+.++.+.++.||++..+|++.++.+. +..++++++...+
T Consensus 81 st~~~~lh~le~~~~~~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa~e~e 137 (228)
T COG1083 81 STIDAALHALESFNIDEDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSAVECE 137 (228)
T ss_pred hHHHHHHHHHHHhccccCeeEEeccCccccchhHHHHHHHHHhcCCCcceEEEeecc
Confidence 33 44555655545678999999999999999999999995 4578898877655
No 27
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=99.80 E-value=9.3e-19 Score=143.47 Aligned_cols=118 Identities=22% Similarity=0.387 Sum_probs=95.7
Q ss_pred CCcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCCChHH
Q 028257 47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTER 126 (211)
Q Consensus 47 ~m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g~~~s 126 (211)
++++.+||||||+|+||.+|.+++++|+||++|++++++.. ++.+||+.+... .. ...++++++....+..|++.+
T Consensus 2 ~~~~~~vILAGG~srRm~dK~l~~~~g~~lie~v~~~L~~~--~~~vvi~~~~~~-~~-~~~~g~~vv~D~~~~~GPL~G 77 (192)
T COG0746 2 MTPMTGVILAGGKSRRMRDKALLPLNGRPLIEHVIDRLRPQ--VDVVVISANRNQ-GR-YAEFGLPVVPDELPGFGPLAG 77 (192)
T ss_pred CCCceEEEecCCccccccccccceeCCeEHHHHHHHHhccc--CCEEEEeCCCch-hh-hhccCCceeecCCCCCCCHHH
Confidence 45788999999999999669999999999999999999864 565555554332 22 345678887766555588999
Q ss_pred HHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeE
Q 028257 127 CNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAV 170 (211)
Q Consensus 127 i~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~v 170 (211)
++.|+++.. .+++++++||+||++++.++.+++...+..+.+
T Consensus 78 i~~al~~~~--~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~~~~ 119 (192)
T COG0746 78 ILAALRHFG--TEWVLVLPCDMPFIPPELVERLLSAFKQTGAAI 119 (192)
T ss_pred HHHHHHhCC--CCeEEEEecCCCCCCHHHHHHHHHhhcccCCcE
Confidence 999999984 789999999999999999999999987544333
No 28
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=99.79 E-value=2.3e-18 Score=140.39 Aligned_cols=119 Identities=25% Similarity=0.346 Sum_probs=102.0
Q ss_pred CCcEEEEEecCCCCCCCC-CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHH---HHHHcCCeEeeCCcccCC
Q 028257 47 RSRVVGIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAE---CCQQFGADVIMTSESCRN 122 (211)
Q Consensus 47 ~m~i~aIIlA~G~ssRlg-~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~---~~~~~~v~vi~~~~~~~g 122 (211)
++++.+||||+|.|+||| +|+|++++|+|++.|+++++.++ .+++++|+++++.... .....++.++.+++..+|
T Consensus 3 ~~~v~~VvLAAGrssRmG~~KlLap~~g~plv~~~~~~a~~a-~~~~vivV~g~~~~~~~~a~~~~~~~~~v~npd~~~G 81 (199)
T COG2068 3 PSTVAAVVLAAGRSSRMGQPKLLAPLDGKPLVRASAETALSA-GLDRVIVVTGHRVAEAVEALLAQLGVTVVVNPDYAQG 81 (199)
T ss_pred CcceEEEEEcccccccCCCcceecccCCCcHHHHHHHHHHhc-CCCeEEEEeCcchhhHHHhhhccCCeEEEeCcchhhh
Confidence 457899999999999998 59999999999999999999987 6999999998652222 223456788888877788
Q ss_pred ChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhC
Q 028257 123 GTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA 166 (211)
Q Consensus 123 ~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~ 166 (211)
..+|+.+|+..+..+.|.++++.+|||++++++++++++.+...
T Consensus 82 ls~Sl~ag~~a~~~~~~~v~~~lgDmP~V~~~t~~rl~~~~~~~ 125 (199)
T COG2068 82 LSTSLKAGLRAADAEGDGVVLMLGDMPQVTPATVRRLIAAFRAR 125 (199)
T ss_pred HhHHHHHHHHhcccCCCeEEEEeCCCCCCCHHHHHHHHHhcccc
Confidence 88999999999864457999999999999999999999999765
No 29
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=99.78 E-value=5e-18 Score=141.97 Aligned_cols=115 Identities=35% Similarity=0.569 Sum_probs=90.8
Q ss_pred EEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc----HHHHHHHHHcCCeEeeCCcccCCChHHH
Q 028257 52 GIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD----EKIAECCQQFGADVIMTSESCRNGTERC 127 (211)
Q Consensus 52 aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~----e~i~~~~~~~~v~vi~~~~~~~g~~~si 127 (211)
+||||||.|+||++|++++++|+||++|+++++.+++.+++++|+++. +.+..++...++.++.++.. +...+.
T Consensus 2 aiIlA~G~S~R~~~K~ll~l~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~~~~v~~v~~~~~--~~l~~~ 79 (233)
T cd02518 2 AIIQARMGSTRLPGKVLKPLGGKPLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKKLGVKVFRGSEE--DVLGRY 79 (233)
T ss_pred EEEeeCCCCCCCCCCcccccCCccHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHHHcCCeEEECCch--hHHHHH
Confidence 799999999999999999999999999999999987558999999974 45666666667777766532 333334
Q ss_pred HHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeE
Q 028257 128 NEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAV 170 (211)
Q Consensus 128 ~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~v 170 (211)
..+++.. +.|++++++||+||+++++++++++.+.. ..+.+
T Consensus 80 ~~~~~~~--~~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~ 121 (233)
T cd02518 80 YQAAEEY--NADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYT 121 (233)
T ss_pred HHHHHHc--CCCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence 4444433 46899999999999999999999998864 33444
No 30
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=99.76 E-value=2.5e-17 Score=133.98 Aligned_cols=112 Identities=21% Similarity=0.245 Sum_probs=89.6
Q ss_pred EEEEecCCCCCCCC--CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHHcCCeEeeCCcccCCChHH
Q 028257 51 VGIIPARFASSRFE--GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQFGADVIMTSESCRNGTER 126 (211)
Q Consensus 51 ~aIIlA~G~ssRlg--~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~~~v~vi~~~~~~~g~~~s 126 (211)
.+||||||+|+||+ +|++++++|+|||+|+++++.++ .+++++|+++ .+.++.+++.....+ .. ....|...+
T Consensus 2 ~aIILAgG~gsRmg~~~K~Ll~i~GkplI~~vi~~l~~~-~i~~I~Vv~~~~~~~~~~~l~~~~~~~-~~-~~g~G~~~~ 78 (183)
T TIGR00454 2 DALIMAGGKGTRLGGVEKPLIEVCGRCLIDHVLSPLLKS-KVNNIIIATSPHTPKTEEYINSAYKDY-KN-ASGKGYIED 78 (183)
T ss_pred eEEEECCccCccCCCCCceEeEECCEEHHHHHHHHHHhC-CCCEEEEEeCCCHHHHHHHHhhcCcEE-Ee-cCCCCHHHH
Confidence 48999999999996 59999999999999999999987 4899999886 355666665434333 22 234466778
Q ss_pred HHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhC
Q 028257 127 CNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA 166 (211)
Q Consensus 127 i~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~ 166 (211)
+..|++.+. ..++++++.||+||+++++++.+++++...
T Consensus 79 l~~al~~~~-~~~~~lv~~~D~P~i~~~~i~~li~~~~~~ 117 (183)
T TIGR00454 79 LNECIGELY-FSEPFLVVSSDLINLRSKIIDSIVDYYYCI 117 (183)
T ss_pred HHHHhhccc-CCCCEEEEeCCcCcCCHHHHHHHHHHHHhc
Confidence 888988653 357899999999999999999999998543
No 31
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=99.76 E-value=5.7e-17 Score=134.35 Aligned_cols=144 Identities=22% Similarity=0.348 Sum_probs=106.5
Q ss_pred EEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHHcCCeEeeCCcccCCChHH
Q 028257 52 GIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQFGADVIMTSESCRNGTER 126 (211)
Q Consensus 52 aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~~~v~vi~~~~~~~g~~~s 126 (211)
|||||||.|+||+ +|+|++++|+|||+|+++++.++ ++++++|+++ .+.+.+++..+++.++..+ ...|...+
T Consensus 1 aiIlaaG~g~R~~~~~pK~l~~v~gkpli~~~i~~l~~~-~i~~i~iv~~~~~~~i~~~~~~~~~~~~~~~-~~~g~~~a 78 (229)
T cd02540 1 AVILAAGKGTRMKSDLPKVLHPLAGKPMLEHVLDAARAL-GPDRIVVVVGHGAEQVKKALANPNVEFVLQE-EQLGTGHA 78 (229)
T ss_pred CEEEeCCCCccCCCCCChhcceeCCccHHHHHHHHHHhC-CCCeEEEEECCCHHHHHHHhCCCCcEEEECC-CCCCCHHH
Confidence 6899999999995 59999999999999999999988 4888877775 4566666666677766544 33566788
Q ss_pred HHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhC-CCeEEEEeeeeCCCCCCCCCC-CeEEEeCCCccEEeeec
Q 028257 127 CNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDAFDPN-RVKCVVDNHGYAIYFSR 204 (211)
Q Consensus 127 i~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~-~d~vv~v~~~~~~~~~~~d~~-~~~~v~~~~~~~~~~~~ 204 (211)
+.+|++.+..+.+.+++++||+||++.+.+.++++.+.+. .+.++. .++.. ++. .-.+..+++|.+..|..
T Consensus 79 i~~a~~~~~~~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~--~~~~~-----~p~~~~~~~~~~~~~v~~~~e 151 (229)
T cd02540 79 VKQALPALKDFEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVL--TAELE-----DPTGYGRIIRDGNGKVLRIVE 151 (229)
T ss_pred HHHHHHhhccCCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEE--EEEcC-----CCCCccEEEEcCCCCEEEEEE
Confidence 9999998842257899999999999999999999988643 344433 23321 222 12344566667666664
No 32
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=99.75 E-value=1.7e-17 Score=148.33 Aligned_cols=113 Identities=15% Similarity=0.129 Sum_probs=93.3
Q ss_pred CCCcEEEEEecCCCCCCCC-CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCCCh
Q 028257 46 FRSRVVGIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGT 124 (211)
Q Consensus 46 ~~m~i~aIIlA~G~ssRlg-~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g~~ 124 (211)
.++++.+||||||+|+||| +|++++++|+|||+|+++++.. .+++++|+++++....+ ..+++.++.++.+..|+.
T Consensus 171 ~~~~i~~iILAGG~SsRmG~~K~ll~~~Gk~ll~~~l~~l~~--~~~~vvV~~~~~~~~~~-~~~~v~~i~d~~~~~Gpl 247 (369)
T PRK14490 171 EEVPLSGLVLAGGRSSRMGSDKALLSYHESNQLVHTAALLRP--HCQEVFISCRAEQAEQY-RSFGIPLITDSYLDIGPL 247 (369)
T ss_pred ccCCceEEEEcCCccccCCCCcEEEEECCccHHHHHHHHHHh--hCCEEEEEeCCchhhHH-hhcCCcEEeCCCCCCCcH
Confidence 3456889999999999998 5999999999999999999985 37889888876543333 345777776655556888
Q ss_pred HHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHH
Q 028257 125 ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL 163 (211)
Q Consensus 125 ~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~ 163 (211)
.++..|+++. +.+++++++|||||+++++++.+++..
T Consensus 248 ~gi~~al~~~--~~~~~lv~~~DmP~i~~~~i~~L~~~~ 284 (369)
T PRK14490 248 GGLLSAQRHH--PDAAWLVVACDLPFLDEATLQQLVEGR 284 (369)
T ss_pred HHHHHHHHhC--CCCcEEEEeCCcCCCCHHHHHHHHHhc
Confidence 8999998876 357899999999999999999999875
No 33
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.74 E-value=2.8e-17 Score=134.82 Aligned_cols=109 Identities=18% Similarity=0.216 Sum_probs=86.5
Q ss_pred CCCCCcEEEEEecCCCCCCCC-CccccccCC-eehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeC-Cccc
Q 028257 44 KNFRSRVVGIIPARFASSRFE-GKPLVNILG-KPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMT-SESC 120 (211)
Q Consensus 44 ~~~~m~i~aIIlA~G~ssRlg-~K~ll~l~G-kpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~-~~~~ 120 (211)
|...+++.+||||||.|+||| +|++++++| +|||+|+++++... +++|+|+++++.+ .+...++.+ ....
T Consensus 3 ~~~~~~i~~vILAgG~s~RmG~~K~ll~~~g~~~ll~~~i~~l~~~--~~~vvvv~~~~~~-----~~~~~~v~d~~~~~ 75 (196)
T PRK00560 3 NPMIDNIPCVILAGGKSSRMGENKALLPFGSYSSLLEYQYTRLLKL--FKKVYISTKDKKF-----EFNAPFLLEKESDL 75 (196)
T ss_pred CccccCceEEEECCcccccCCCCceEEEeCCCCcHHHHHHHHHHHh--CCEEEEEECchhc-----ccCCcEEecCCCCC
Confidence 445678999999999999997 599999999 99999999999864 7899999876322 234555544 2233
Q ss_pred CCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHH
Q 028257 121 RNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVK 161 (211)
Q Consensus 121 ~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~ 161 (211)
.|+..++..++... +.+++++++||+|++++++++.++.
T Consensus 76 ~gpl~gi~~~l~~~--~~~~vlv~~~D~P~i~~~~i~~l~~ 114 (196)
T PRK00560 76 FSPLFGIINAFLTL--QTPEIFFISVDTPFVSFESIKKLCG 114 (196)
T ss_pred CCcHHHHHHHHHhc--CCCeEEEEecCcCcCCHHHHHHHHh
Confidence 46667777777765 4689999999999999999999854
No 34
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.74 E-value=1.4e-16 Score=146.94 Aligned_cols=153 Identities=18% Similarity=0.197 Sum_probs=113.6
Q ss_pred CCcEEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHHcCCeEeeCCcccC
Q 028257 47 RSRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCR 121 (211)
Q Consensus 47 ~m~i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~~~v~vi~~~~~~~ 121 (211)
.|++.+||||||.|+||+ +|+|++++|+|||+|+++++.++ ++++++|++++ +.+.+++...++.++.. +...
T Consensus 5 ~~~~~avILAaG~gtRl~~~~pK~llpi~gkpli~~~l~~l~~~-gi~~ivvv~~~~~~~i~~~~~~~~i~~v~~-~~~~ 82 (481)
T PRK14358 5 TRPLDVVILAAGQGTRMKSALPKVLHPVAGRPMVAWAVKAARDL-GARKIVVVTGHGAEQVEAALQGSGVAFARQ-EQQL 82 (481)
T ss_pred cCCceEEEECCCCCCcCCCCCCceecEECCeeHHHHHHHHHHhC-CCCeEEEEeCCCHHHHHHHhccCCcEEecC-CCcC
Confidence 367889999999999995 69999999999999999999987 68999998874 55666655556665543 3344
Q ss_pred CChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeeeCCCCCCCCCC-CeEEEeCCCccEE
Q 028257 122 NGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPN-RVKCVVDNHGYAI 200 (211)
Q Consensus 122 g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~~~~~~~~d~~-~~~~v~~~~~~~~ 200 (211)
|...+++.+++.+....+.++++++|+||+++..++++++.+.++. ..+++...+.. |+. .-.+..|.+|.+.
T Consensus 83 Gt~~al~~~~~~l~~~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~-~~~ti~~~~~~-----~~~~yG~v~~d~~g~v~ 156 (481)
T PRK14358 83 GTGDAFLSGASALTEGDADILVLYGDTPLLRPDTLRALVADHRAQG-SAMTILTGELP-----DATGYGRIVRGADGAVE 156 (481)
T ss_pred CcHHHHHHHHHHhhCCCCcEEEEeCCeeccCHHHHHHHHHHHHhcC-CeEEEEEEEcC-----CCCCceEEEECCCCCEE
Confidence 6677888888887422345899999999999999999999886543 33333333322 222 3445667788888
Q ss_pred eeecCCC
Q 028257 201 YFSRGLI 207 (211)
Q Consensus 201 ~~~~~~~ 207 (211)
.|.+++.
T Consensus 157 ~~~Ek~~ 163 (481)
T PRK14358 157 RIVEQKD 163 (481)
T ss_pred EEEECCC
Confidence 8887643
No 35
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.73 E-value=1.5e-16 Score=144.75 Aligned_cols=125 Identities=22% Similarity=0.296 Sum_probs=96.7
Q ss_pred CCcEEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHHcCCeE-eeCCccc
Q 028257 47 RSRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQFGADV-IMTSESC 120 (211)
Q Consensus 47 ~m~i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~~~v~v-i~~~~~~ 120 (211)
||++.+||||||.|+||+ +|+|++++|+|||+|+++++..+ ++++++|+++ .+++.+++..++..+ +......
T Consensus 3 ~~~~~aiILAaG~gsR~~~~~pK~ll~v~gkpli~~~l~~l~~~-gi~~ivvv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 81 (446)
T PRK14353 3 DRTCLAIILAAGEGTRMKSSLPKVLHPVAGRPMLAHVLAAAASL-GPSRVAVVVGPGAEAVAAAAAKIAPDAEIFVQKER 81 (446)
T ss_pred cccceEEEEcCCCCCccCCCCCcccCEECCchHHHHHHHHHHhC-CCCcEEEEECCCHHHHHHHhhccCCCceEEEcCCC
Confidence 567899999999999996 69999999999999999999988 5889888875 456666665543222 2222234
Q ss_pred CCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEE
Q 028257 121 RNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFS 172 (211)
Q Consensus 121 ~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~ 172 (211)
.|...++..+++.+....+++++++||+||++++.++.+++.+.+..+.++.
T Consensus 82 ~G~~~sl~~a~~~l~~~~~~~lv~~~D~P~i~~~~l~~l~~~~~~~~~~~i~ 133 (446)
T PRK14353 82 LGTAHAVLAAREALAGGYGDVLVLYGDTPLITAETLARLRERLADGADVVVL 133 (446)
T ss_pred CCcHHHHHHHHHHHhccCCCEEEEeCCcccCCHHHHHHHHHhHhcCCcEEEE
Confidence 4667788888888742357899999999999999999999866555565544
No 36
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.72 E-value=2.5e-16 Score=143.73 Aligned_cols=146 Identities=21% Similarity=0.274 Sum_probs=106.3
Q ss_pred cEEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHHcCCeEeeCCcccCCC
Q 028257 49 RVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCRNG 123 (211)
Q Consensus 49 ~i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~~~v~vi~~~~~~~g~ 123 (211)
.+.+||||||.|+||+ +|+|++++|+|||+|+++++... .+++++|+++. +.+.+++...++.++.++ ...|.
T Consensus 5 ~~~aiILAaG~gtR~~~~~pK~l~~i~gkpli~~~l~~l~~~-~~~~iivv~~~~~~~i~~~~~~~~~~~v~~~-~~~Gt 82 (456)
T PRK14356 5 TTGALILAAGKGTRMHSDKPKVLQTLLGEPMLRFVYRALRPL-FGDNVWTVVGHRADMVRAAFPDEDARFVLQE-QQLGT 82 (456)
T ss_pred ceeEEEEcCCCCccCCCCCCceecccCCCcHHHHHHHHHHhc-CCCcEEEEECCCHHHHHHhccccCceEEEcC-CCCCc
Confidence 4789999999999995 69999999999999999999986 57888887753 555555544456665553 34566
Q ss_pred hHHHHHHHHhhcc-CCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeeeCCCCCCCCCCCeEEEeCCCccEEee
Q 028257 124 TERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYF 202 (211)
Q Consensus 124 ~~si~~al~~l~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~~~~~~~~d~~~~~~v~~~~~~~~~~ 202 (211)
..++..+++.+.. +.++++++++|+||++.+.++.+++.+. ..+.++.. .++ .|++.+.++..++|++..|
T Consensus 83 ~~al~~a~~~l~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~-~~~~~l~~--~~~-----~~~~~~g~v~~~~g~V~~~ 154 (456)
T PRK14356 83 GHALQCAWPSLTAAGLDRVLVVNGDTPLVTTDTIDDFLKEAA-GADLAFMT--LTL-----PDPGAYGRVVRRNGHVAAI 154 (456)
T ss_pred HHHHHHHHHHHhhcCCCcEEEEeCCcccCCHHHHHHHHHHHh-cCCEEEEE--EEc-----CCCCCceEEEEcCCeEEEE
Confidence 6788888887742 3578999999999999999999998875 34444332 231 1333444444466776666
Q ss_pred ec
Q 028257 203 SR 204 (211)
Q Consensus 203 ~~ 204 (211)
..
T Consensus 155 ~e 156 (456)
T PRK14356 155 VE 156 (456)
T ss_pred EE
Confidence 54
No 37
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=99.72 E-value=9.5e-17 Score=127.98 Aligned_cols=106 Identities=32% Similarity=0.473 Sum_probs=94.5
Q ss_pred EEEecCCCCCCCC--CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHHcCCeEeeCCcccCCChHHH
Q 028257 52 GIIPARFASSRFE--GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQFGADVIMTSESCRNGTERC 127 (211)
Q Consensus 52 aIIlA~G~ssRlg--~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~~~v~vi~~~~~~~g~~~si 127 (211)
+||+|||+|+||+ .|++++++|||||.|+++++++ .+++|+|+++ .+.+++++...+++++..+.. |...-+
T Consensus 3 ~iiMAGGrGtRmg~~EKPlleV~GkpLI~~v~~al~~--~~d~i~v~isp~tp~t~~~~~~~gv~vi~tpG~--GYv~Dl 78 (177)
T COG2266 3 AIIMAGGRGTRMGRPEKPLLEVCGKPLIDRVLEALRK--IVDEIIVAISPHTPKTKEYLESVGVKVIETPGE--GYVEDL 78 (177)
T ss_pred eEEecCCcccccCCCcCcchhhCCccHHHHHHHHHHh--hcCcEEEEeCCCCHhHHHHHHhcCceEEEcCCC--ChHHHH
Confidence 7999999999998 3999999999999999999997 5899998885 588899998889999887643 667788
Q ss_pred HHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHH
Q 028257 128 NEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ 164 (211)
Q Consensus 128 ~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~ 164 (211)
..+++++. ..+|++++|.||+++.+|+.+++.+.
T Consensus 79 ~~al~~l~---~P~lvvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 79 RFALESLG---TPILVVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred HHHHHhcC---CceEEEecccccCCHHHHHHHHHHHh
Confidence 99999984 38999999999999999999999986
No 38
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=99.71 E-value=1.6e-16 Score=140.97 Aligned_cols=113 Identities=12% Similarity=0.116 Sum_probs=91.2
Q ss_pred CcEEEEEecCCCCCCCC-CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCCChHH
Q 028257 48 SRVVGIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTER 126 (211)
Q Consensus 48 m~i~aIIlA~G~ssRlg-~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g~~~s 126 (211)
.++.+||||||+|+||| +|+|++++|+||++|+++.+.. .+++|+|+++++..... ....+.++.+..+..|++.+
T Consensus 159 ~~i~~IILAGGkSsRMG~dKaLL~~~GkpLl~~~ie~l~~--~~~~ViVv~~~~~~~~~-~~~~v~~I~D~~~~~GPlag 235 (346)
T PRK14500 159 TPLYGLVLTGGKSRRMGKDKALLNYQGQPHAQYLYDLLAK--YCEQVFLSARPSQWQGT-PLENLPTLPDRGESVGPISG 235 (346)
T ss_pred CCceEEEEeccccccCCCCcccceeCCccHHHHHHHHHHh--hCCEEEEEeCchHhhhc-cccCCeEEeCCCCCCChHHH
Confidence 46889999999999998 5999999999999999999986 48899998876542221 11134555555556789999
Q ss_pred HHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh
Q 028257 127 CNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 165 (211)
Q Consensus 127 i~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~ 165 (211)
++.|++... .+.+++++||+||++++.+..+++.+..
T Consensus 236 I~aaL~~~~--~~~~lVl~cDmP~l~~~~l~~L~~~~~~ 272 (346)
T PRK14500 236 ILTALQSYP--GVNWLVVACDLAYLNSETVEKLLAHYRQ 272 (346)
T ss_pred HHHHHHhCC--CCCEEEEECCcCCCCHHHHHHHHHhhhc
Confidence 999999863 3567999999999999999999998754
No 39
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.69 E-value=9.8e-16 Score=136.49 Aligned_cols=150 Identities=21% Similarity=0.266 Sum_probs=112.6
Q ss_pred CcEEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHHc-CCeEeeCCcccC
Q 028257 48 SRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQF-GADVIMTSESCR 121 (211)
Q Consensus 48 m~i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~~-~v~vi~~~~~~~ 121 (211)
|+..+||||+|+|+||. +|-|++++|+||++|+++++... ..++++++.+ .+.+++.+.+. .+.++...+ ..
T Consensus 1 ~~~~~vILAAGkGTRMkS~lPKVLH~vaGkpMl~hVi~~a~~l-~~~~i~vVvGh~ae~V~~~~~~~~~v~~v~Q~e-ql 78 (460)
T COG1207 1 MSLSAVILAAGKGTRMKSDLPKVLHPVAGKPMLEHVIDAARAL-GPDDIVVVVGHGAEQVREALAERDDVEFVLQEE-QL 78 (460)
T ss_pred CCceEEEEecCCCccccCCCcccchhccCccHHHHHHHHHhhc-CcceEEEEEcCCHHHHHHHhccccCceEEEecc-cC
Confidence 45679999999999996 59999999999999999999987 5888888775 46666665533 467766543 44
Q ss_pred CChHHHHHHHHhhc-cCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeeeCCCCCCCCCC-CeEEEeCCCccE
Q 028257 122 NGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPN-RVKCVVDNHGYA 199 (211)
Q Consensus 122 g~~~si~~al~~l~-~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~~~~~~~~d~~-~~~~v~~~~~~~ 199 (211)
|+..++..|+..+. .....+||+.+|.||++.++++.+++.+....+ -+++.... .-||. +-|.+.+.+|.+
T Consensus 79 GTgHAV~~a~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~-~~tvLt~~-----~~dP~GYGRIvr~~~g~V 152 (460)
T COG1207 79 GTGHAVLQALPALADDYDGDVLVLYGDVPLITAETLEELLAAHPAHGA-AATVLTAE-----LDDPTGYGRIVRDGNGEV 152 (460)
T ss_pred ChHHHHHhhhhhhhcCCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCC-ceEEEEEE-----cCCCCCcceEEEcCCCcE
Confidence 66678889999884 334479999999999999999999988864322 23333333 22454 467888888887
Q ss_pred EeeecC
Q 028257 200 IYFSRG 205 (211)
Q Consensus 200 ~~~~~~ 205 (211)
....++
T Consensus 153 ~~IVE~ 158 (460)
T COG1207 153 TAIVEE 158 (460)
T ss_pred EEEEEc
Confidence 766544
No 40
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=99.69 E-value=3.2e-16 Score=129.03 Aligned_cols=120 Identities=36% Similarity=0.583 Sum_probs=103.5
Q ss_pred CCcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCCeEEEEcC----cHHHHHHHHHcCCeEeeCCcccCC
Q 028257 47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATD----DEKIAECCQQFGADVIMTSESCRN 122 (211)
Q Consensus 47 ~m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~----~e~i~~~~~~~~v~vi~~~~~~~g 122 (211)
|+++.+||.|+-.|+|+++|.|++++|+|||++.+++++.+..++++||.|. ++.+++++...|+.++..+++ +
T Consensus 1 ~~~I~~IiQARmgStRLpgKvLlpL~~~pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~~G~~vfrGs~~--d 78 (241)
T COG1861 1 MSMILVIIQARMGSTRLPGKVLLPLGGEPMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRSHGFYVFRGSEE--D 78 (241)
T ss_pred CCcEEEEeeecccCccCCcchhhhcCCCchHHHHHHHHhccccccceEEEecCCcchhHHHHHHHHcCeeEecCCHH--H
Confidence 5679999999999999999999999999999999999999999999999985 345777888889988876433 5
Q ss_pred ChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHH-HhCCCeE
Q 028257 123 GTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL-QAAPDAV 170 (211)
Q Consensus 123 ~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~-~~~~d~v 170 (211)
-+.++..+++.. +.+.++-+.+|.||++++.++.+++.+ .++.|++
T Consensus 79 VL~Rf~~a~~a~--~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~gaDY~ 125 (241)
T COG1861 79 VLQRFIIAIKAY--SADVVVRVTGDNPFLDPELVDAAVDRHLEKGADYV 125 (241)
T ss_pred HHHHHHHHHHhc--CCCeEEEeeCCCCCCCHHHHHHHHHHHHhcCCccc
Confidence 567888888887 467999999999999999999999987 4555654
No 41
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.68 E-value=1.2e-15 Score=139.49 Aligned_cols=149 Identities=15% Similarity=0.176 Sum_probs=108.4
Q ss_pred CCcEEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHHcCCeEeeCCcccC
Q 028257 47 RSRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCR 121 (211)
Q Consensus 47 ~m~i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~~~v~vi~~~~~~~ 121 (211)
||++.+||||||.|+||. +|+|++++|+|||+|+++.+..+ ++++++|+++. +.+++.+....+.++..+ ...
T Consensus 3 ~~~~~aiIlAaG~gtRl~~~~pK~l~~i~gkpli~~~i~~l~~~-gi~~i~vv~~~~~~~i~~~~~~~~~~~i~~~-~~~ 80 (456)
T PRK09451 3 NSAMSVVILAAGKGTRMYSDLPKVLHTLAGKPMVQHVIDAANEL-GAQHVHLVYGHGGDLLKQTLADEPLNWVLQA-EQL 80 (456)
T ss_pred CCCceEEEEcCCCCCcCCCCCChhcceeCChhHHHHHHHHHHhc-CCCcEEEEECCCHHHHHHhhccCCcEEEECC-CCC
Confidence 567889999999999995 59999999999999999999987 58999988863 455555543345555543 345
Q ss_pred CChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeeeCCCCCCCCCCCeEEEeCCCccEEe
Q 028257 122 NGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 201 (211)
Q Consensus 122 g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~~~~~~~~d~~~~~~v~~~~~~~~~ 201 (211)
|...+++.+++.+. +.++++++++|+|+++++.++++++.+.+. +.. +...+.+ ++..+-++.+.++++..
T Consensus 81 Gt~~al~~a~~~l~-~~~~vlV~~gD~P~i~~~~i~~l~~~~~~~-~~~--i~~~~~~-----~~~~yG~v~~~~g~V~~ 151 (456)
T PRK09451 81 GTGHAMQQAAPFFA-DDEDILMLYGDVPLISVETLQRLRDAKPQG-GIG--LLTVKLD-----NPTGYGRITRENGKVVG 151 (456)
T ss_pred CcHHHHHHHHHhhc-cCCcEEEEeCCcccCCHHHHHHHHHHhhcC-CEE--EEEEEcC-----CCCCceEEEecCCeEEE
Confidence 66778888888774 357899999999999999999999876543 322 2222221 22222234556778888
Q ss_pred eecCC
Q 028257 202 FSRGL 206 (211)
Q Consensus 202 ~~~~~ 206 (211)
|.+++
T Consensus 152 ~~EKp 156 (456)
T PRK09451 152 IVEQK 156 (456)
T ss_pred EEECC
Confidence 88875
No 42
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.68 E-value=2.5e-15 Score=138.51 Aligned_cols=152 Identities=21% Similarity=0.245 Sum_probs=106.2
Q ss_pred cEEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHHcCCeE-eeCCcccCC
Q 028257 49 RVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQFGADV-IMTSESCRN 122 (211)
Q Consensus 49 ~i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~~~v~v-i~~~~~~~g 122 (211)
++.+||||||.|+||+ +|+|++++|+|||+|+++++.++ ++++++|+++ .+++.+.+......+ +..++...|
T Consensus 4 ~~~avILAaG~gtRm~~~~pK~llpi~gkpli~~~l~~l~~~-g~~~iivvv~~~~~~i~~~~~~~~~~~~~~~~~~~~G 82 (482)
T PRK14352 4 PTAVIVLAAGAGTRMRSDTPKVLHTLAGRSMLGHVLHAAAGL-APQHLVVVVGHDRERVAPAVAELAPEVDIAVQDEQPG 82 (482)
T ss_pred CceEEEEcCCCCCcCCCCCCceeceeCCccHHHHHHHHHHhc-CCCcEEEEECCCHHHHHHHhhccCCccEEEeCCCCCC
Confidence 4679999999999996 59999999999999999999987 5788887775 345555554432222 223333445
Q ss_pred ChHHHHHHHHhhcc-CCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeeeCCCCCCCCCCCeEEEeCCCccEEe
Q 028257 123 GTERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 201 (211)
Q Consensus 123 ~~~si~~al~~l~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~~~~~~~~d~~~~~~v~~~~~~~~~ 201 (211)
...+++.+++.+.. ..+++++++||+||+++++++++++.+.+.. ..+++...++.+.. ..-.+..+++|++..
T Consensus 83 t~~si~~al~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~-~~~~v~~~~~~~p~----~yg~~~~~~~g~V~~ 157 (482)
T PRK14352 83 TGHAVQCALEALPADFDGTVVVTAGDVPLLDGETLADLVATHTAEG-NAVTVLTTTLDDPT----GYGRILRDQDGEVTA 157 (482)
T ss_pred cHHHHHHHHHHhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhcC-CeEEEEEeecCCCC----CCCEEEECCCCCEEE
Confidence 56789999998742 2467999999999999999999999886543 33333333332211 122334467777777
Q ss_pred eecCC
Q 028257 202 FSRGL 206 (211)
Q Consensus 202 ~~~~~ 206 (211)
|..++
T Consensus 158 ~~EKp 162 (482)
T PRK14352 158 IVEQK 162 (482)
T ss_pred EEECC
Confidence 77654
No 43
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=99.67 E-value=1.2e-15 Score=136.32 Aligned_cols=114 Identities=21% Similarity=0.309 Sum_probs=87.1
Q ss_pred CCcEEEEEecCCCCCCC-C-CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHc-CCeEeeCCcc-cCC
Q 028257 47 RSRVVGIIPARFASSRF-E-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF-GADVIMTSES-CRN 122 (211)
Q Consensus 47 ~m~i~aIIlA~G~ssRl-g-~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~-~v~vi~~~~~-~~g 122 (211)
++++.+||||||.|+|| + +|+|++++|+|||+|+++++.. .+++|+|+++.+. ..+...+ ++.++..... ..|
T Consensus 3 ~~~i~~VILAgG~s~Rmgg~~K~ll~i~Gkpll~~~i~~l~~--~~~~iivvv~~~~-~~~~~~~~~~~~i~d~~~g~~G 79 (366)
T PRK14489 3 ISQIAGVILAGGLSRRMNGRDKALILLGGKPLIERVVDRLRP--QFARIHLNINRDP-ARYQDLFPGLPVYPDILPGFQG 79 (366)
T ss_pred CCCceEEEEcCCcccCCCCCCCceeEECCeeHHHHHHHHHHh--hCCEEEEEcCCCH-HHHHhhccCCcEEecCCCCCCC
Confidence 44688999999999999 4 6999999999999999999985 4889988664322 1121111 3344432222 246
Q ss_pred ChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh
Q 028257 123 GTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 165 (211)
Q Consensus 123 ~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~ 165 (211)
+..+++.|++++ +.+++++++||+||+++++++.+++.+.+
T Consensus 80 ~~~si~~gl~~~--~~~~vlv~~~D~P~i~~~~i~~L~~~~~~ 120 (366)
T PRK14489 80 PLSGILAGLEHA--DSEYLFVVACDTPFLPENLVKRLSKALAI 120 (366)
T ss_pred hHHHHHHHHHhc--CCCcEEEeeCCcCCCCHHHHHHHHHHhhc
Confidence 678999999987 46889999999999999999999998743
No 44
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.67 E-value=2.4e-15 Score=136.68 Aligned_cols=113 Identities=20% Similarity=0.271 Sum_probs=92.1
Q ss_pred EEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHHcCCeEeeCCcccCCChH
Q 028257 51 VGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQFGADVIMTSESCRNGTE 125 (211)
Q Consensus 51 ~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~~~v~vi~~~~~~~g~~~ 125 (211)
.+||||||.|+||+ +|+|++++|+|||+|+++++.++ ++++++|+++ .+.+.+++.++++.++..+++ .|...
T Consensus 2 ~aiIlAaG~g~R~~~~~pK~l~~i~gkpli~~~l~~l~~~-g~~~iiiv~~~~~~~i~~~~~~~~i~~~~~~~~-~G~~~ 79 (451)
T TIGR01173 2 SVVILAAGKGTRMKSDLPKVLHPLAGKPMLEHVIDAARAL-GPQKIHVVYGHGAEQVRKALANRDVNWVLQAEQ-LGTGH 79 (451)
T ss_pred eEEEEcCCCCcccCCCCchhhceeCCccHHHHHHHHHHhC-CCCeEEEEECCCHHHHHHHhcCCCcEEEEcCCC-CchHH
Confidence 48999999999996 59999999999999999999987 5788877775 356666666666766554433 35567
Q ss_pred HHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhC
Q 028257 126 RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA 166 (211)
Q Consensus 126 si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~ 166 (211)
+++++++.+. +.+.++++.+|+||++++.++++++.+.+.
T Consensus 80 ai~~a~~~l~-~~~~~lv~~~D~p~i~~~~~~~l~~~~~~~ 119 (451)
T TIGR01173 80 AVLQALPFLP-DDGDVLVLYGDVPLISAETLERLLEAHRQN 119 (451)
T ss_pred HHHHHHHhcC-CCCcEEEEECCcCCcCHHHHHHHHHHHhhC
Confidence 8899998884 246899999999999999999999988654
No 45
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=99.67 E-value=2.8e-15 Score=123.10 Aligned_cols=145 Identities=21% Similarity=0.262 Sum_probs=104.2
Q ss_pred EEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHH---cCCeE-eeCCcc
Q 028257 52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQ---FGADV-IMTSES 119 (211)
Q Consensus 52 aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~---~~v~v-i~~~~~ 119 (211)
|||||||.|+||+ +|+|++++|+|||+|+++.+.++ ++++|+|+++ .+.+.+++.. +++.+ +..+..
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i~g~pli~~~l~~l~~~-g~~~v~vv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 79 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPVAGRPFLEYLLEYLARQ-GISRIVLSVGYLAEQIEEYFGDGYRGGIRIYYVIEPE 79 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEECCcchHHHHHHHHHHC-CCCEEEEEcccCHHHHHHHHcCccccCceEEEEECCC
Confidence 6899999999995 59999999999999999999987 5999999997 4556666543 24444 333334
Q ss_pred cCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEEeeeeCCCCCCCCCCCeEEEeCCCcc
Q 028257 120 CRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGY 198 (211)
Q Consensus 120 ~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v~~~~~~~~~~~d~~~~~~v~~~~~~ 198 (211)
..|...++..+++.+ ..+++++++||+|+ + ..+..+++.+.+ +.+.++.+. +... .....++..+++|+
T Consensus 80 ~~G~~~~l~~a~~~~--~~~~~lv~~~D~~~-~-~~~~~~l~~~~~~~~~~~~~~~--~~~~----~~~~~~v~~d~~~~ 149 (223)
T cd06915 80 PLGTGGAIKNALPKL--PEDQFLVLNGDTYF-D-VDLLALLAALRASGADATMALR--RVPD----ASRYGNVTVDGDGR 149 (223)
T ss_pred CCcchHHHHHHHhhc--CCCCEEEEECCccc-C-CCHHHHHHHHHhCCCcEEEEEE--ECCC----CCcceeEEECCCCe
Confidence 456667888999887 35789999999976 4 467888887754 344444443 3211 12234556788888
Q ss_pred EEeeecCCC
Q 028257 199 AIYFSRGLI 207 (211)
Q Consensus 199 ~~~~~~~~~ 207 (211)
+..|.+++.
T Consensus 150 v~~~~ek~~ 158 (223)
T cd06915 150 VIAFVEKGP 158 (223)
T ss_pred EEEEEeCCC
Confidence 989987643
No 46
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.67 E-value=3.5e-15 Score=136.62 Aligned_cols=152 Identities=19% Similarity=0.227 Sum_probs=109.5
Q ss_pred CCcEEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHHc-CCeEeeCCccc
Q 028257 47 RSRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQF-GADVIMTSESC 120 (211)
Q Consensus 47 ~m~i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~~-~v~vi~~~~~~ 120 (211)
|.++.+||||||.|+||+ +|+|++++|+||++|+++++.++ +++++++++++ +++.+++.+. .+.++..+ ..
T Consensus 1 m~~~~avIlAaG~g~Rl~~~~pK~l~pi~g~pli~~~l~~l~~~-gi~~iiiv~~~~~~~i~~~~~~~~~i~~~~~~-~~ 78 (459)
T PRK14355 1 MNNLAAIILAAGKGTRMKSDLVKVMHPLAGRPMVSWPVAAAREA-GAGRIVLVVGHQAEKVREHFAGDGDVSFALQE-EQ 78 (459)
T ss_pred CCcceEEEEcCCCCcccCCCCCceeceeCCccHHHHHHHHHHhc-CCCeEEEEECCCHHHHHHHhccCCceEEEecC-CC
Confidence 346789999999999996 49999999999999999999988 58898888763 5566665432 33333332 33
Q ss_pred CCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeeeCCCCCCCCCCCeEEEeCCCccEE
Q 028257 121 RNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAI 200 (211)
Q Consensus 121 ~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~~~~~~~~d~~~~~~v~~~~~~~~ 200 (211)
.|...++..+++.+....+.++++++|+||++++.++++++.+... +..+++...+..+. ...-.+..|+++++.
T Consensus 79 ~Gt~~al~~a~~~l~~~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~-~~~~~v~~~~~~~~----~~~g~v~~d~~g~v~ 153 (459)
T PRK14355 79 LGTGHAVACAAPALDGFSGTVLILCGDVPLLRAETLQGMLAAHRAT-GAAVTVLTARLENP----FGYGRIVRDADGRVL 153 (459)
T ss_pred CCHHHHHHHHHHHhhccCCcEEEEECCccCcCHHHHHHHHHHHHhc-CCcEEEEEEEcCCC----CcCCEEEEcCCCCEE
Confidence 4556788889888753357899999999999999999999988543 34444444442211 123345567777777
Q ss_pred eeecC
Q 028257 201 YFSRG 205 (211)
Q Consensus 201 ~~~~~ 205 (211)
.|.++
T Consensus 154 ~~~ek 158 (459)
T PRK14355 154 RIVEE 158 (459)
T ss_pred EEEEc
Confidence 77754
No 47
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.66 E-value=5.1e-15 Score=134.76 Aligned_cols=150 Identities=15% Similarity=0.219 Sum_probs=105.7
Q ss_pred EEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHHc-CCeEeeCCcccCCC
Q 028257 50 VVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQF-GADVIMTSESCRNG 123 (211)
Q Consensus 50 i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~~-~v~vi~~~~~~~g~ 123 (211)
+.+||||||.|+||+ +|+|++++|+|||+|+++++.++ ++++++|++.. +.+.+++.++ ++.++. +.+..|.
T Consensus 2 ~~~iIlAaG~gsR~~~~~pK~ll~v~gkpli~~~l~~l~~~-g~~~iivvv~~~~~~i~~~~~~~~~i~~v~-~~~~~G~ 79 (450)
T PRK14360 2 LAVAILAAGKGTRMKSSLPKVLHPLGGKSLVERVLDSCEEL-KPDRRLVIVGHQAEEVEQSLAHLPGLEFVE-QQPQLGT 79 (450)
T ss_pred ceEEEEeCCCCccCCCCCChhcCEECChhHHHHHHHHHHhC-CCCeEEEEECCCHHHHHHHhcccCCeEEEE-eCCcCCc
Confidence 568999999999996 69999999999999999999987 57777777653 4566655443 355554 2334566
Q ss_pred hHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeeeCCCCCCCCCCCeEEEeCCCccEEeee
Q 028257 124 TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFS 203 (211)
Q Consensus 124 ~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~~~~~~~~d~~~~~~v~~~~~~~~~~~ 203 (211)
..++..+++.+....++++++++|+||++++.++++++.+.+.. ..+++......+.. ..-.+..+++|++..|.
T Consensus 80 ~~sv~~~~~~l~~~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~-~~~~~~~~~~~~~~----~~g~~~~d~~g~v~~~~ 154 (450)
T PRK14360 80 GHAVQQLLPVLKGFEGDLLVLNGDVPLLRPETLEALLNTHRSSN-ADVTLLTARLPNPK----GYGRVFCDGNNLVEQIV 154 (450)
T ss_pred HHHHHHHHHHhhccCCcEEEEeCCccccCHHHHHHHHHHHHhcC-CcEEEEEEecCCCC----CccEEEECCCCCEEEEE
Confidence 67888888887532467899999999999999999999886542 22333322222111 12234457777877776
Q ss_pred cCC
Q 028257 204 RGL 206 (211)
Q Consensus 204 ~~~ 206 (211)
+++
T Consensus 155 ek~ 157 (450)
T PRK14360 155 EDR 157 (450)
T ss_pred ECC
Confidence 654
No 48
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.64 E-value=9.8e-15 Score=133.19 Aligned_cols=115 Identities=23% Similarity=0.308 Sum_probs=90.4
Q ss_pred CcEEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHHcCCeEeeCCcccCC
Q 028257 48 SRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQFGADVIMTSESCRN 122 (211)
Q Consensus 48 m~i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~~~v~vi~~~~~~~g 122 (211)
|++.+||||||.|+||+ +|+|++++|+|||+|+++++.++ ++++++|+++ .+++.+++.. +..++.. ....|
T Consensus 1 m~~~avIlAaG~g~Rl~~~~pK~ll~i~Gkpli~~~l~~l~~~-gi~~iivvv~~~~~~i~~~~~~-~~~~~~~-~~~~g 77 (458)
T PRK14354 1 MNRYAIILAAGKGTRMKSKLPKVLHKVCGKPMVEHVVDSVKKA-GIDKIVTVVGHGAEEVKEVLGD-RSEFALQ-EEQLG 77 (458)
T ss_pred CCceEEEEeCCCCcccCCCCChhhCEeCCccHHHHHHHHHHhC-CCCeEEEEeCCCHHHHHHHhcC-CcEEEEc-CCCCC
Confidence 67889999999999996 59999999999999999999987 5888887765 3455544322 2344433 23345
Q ss_pred ChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh
Q 028257 123 GTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 165 (211)
Q Consensus 123 ~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~ 165 (211)
...+++.+++.+....|.++++++|+||++++.++++++.+.+
T Consensus 78 ~~~al~~a~~~l~~~~d~vlv~~~D~p~i~~~~l~~li~~~~~ 120 (458)
T PRK14354 78 TGHAVMQAEEFLADKEGTTLVICGDTPLITAETLKNLIDFHEE 120 (458)
T ss_pred HHHHHHHHHHHhcccCCeEEEEECCccccCHHHHHHHHHHHHh
Confidence 5678888988874224789999999999999999999998854
No 49
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.63 E-value=3.3e-15 Score=124.40 Aligned_cols=151 Identities=20% Similarity=0.278 Sum_probs=117.8
Q ss_pred CCcEEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC---cHHHHHHHHHcC--CeEeeCCc
Q 028257 47 RSRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD---DEKIAECCQQFG--ADVIMTSE 118 (211)
Q Consensus 47 ~m~i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~---~e~i~~~~~~~~--v~vi~~~~ 118 (211)
|+...|||||||.|+||+ ||+|.+++|+++|.|++++|.+. +++++|||++ .+.++++..+++ ..++.++.
T Consensus 1 ~~~~kavILAAG~GsRlg~~~PK~Lvev~gr~ii~~~i~~L~~~-gi~e~vvV~~g~~~~lve~~l~~~~~~~~iv~N~~ 79 (239)
T COG1213 1 MHPMKAVILAAGFGSRLGPDIPKALVEVGGREIIYRTIENLAKA-GITEFVVVTNGYRADLVEEFLKKYPFNAKIVINSD 79 (239)
T ss_pred CCceeEEEEecccccccCCCCCchhhhcCCeEeHHHHHHHHHHc-CCceEEEEeccchHHHHHHHHhcCCcceEEEeCCC
Confidence 345679999999999997 59999999999999999999997 6999999983 466777777766 45677776
Q ss_pred ccCCC-hHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeeeCCCCCCCCCCCeEEEeCCCc
Q 028257 119 SCRNG-TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHG 197 (211)
Q Consensus 119 ~~~g~-~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~~~~~~~~d~~~~~~v~~~~~ 197 (211)
...+. .-|++.|.+.+. ..++++++|+ +..+..++.++++- ...++...... ..+-++.+.+.+.+|
T Consensus 80 y~ktN~~~Sl~~akd~~~---~~fii~~sD~-vye~~~~e~l~~a~---~~~li~d~~~~-----~~~~~ea~kv~~e~G 147 (239)
T COG1213 80 YEKTNTGYSLLLAKDYMD---GRFILVMSDH-VYEPSILERLLEAP---GEGLIVDRRPR-----YVGVEEATKVKDEGG 147 (239)
T ss_pred cccCCceeEEeeehhhhc---CcEEEEeCCE-eecHHHHHHHHhCc---CCcEEEecccc-----ccccCceeEEEecCC
Confidence 65555 568888999884 3599999999 88999999998764 22233322111 334467889999999
Q ss_pred cEEeeecCCCCCC
Q 028257 198 YAIYFSRGLIPYN 210 (211)
Q Consensus 198 ~~~~~~~~~~~~~ 210 (211)
++...++++.+|+
T Consensus 148 ~i~~igK~l~e~~ 160 (239)
T COG1213 148 RIVEIGKDLTEYD 160 (239)
T ss_pred EEehhcCCccccc
Confidence 9999999987765
No 50
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.60 E-value=4.3e-14 Score=116.95 Aligned_cols=146 Identities=19% Similarity=0.218 Sum_probs=102.7
Q ss_pred EEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHH--cCCeEeeCCc--c
Q 028257 52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ--FGADVIMTSE--S 119 (211)
Q Consensus 52 aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~--~~v~vi~~~~--~ 119 (211)
|||+|||.|+||. +|++++++|+|||+|+++.+.++ ++++|+|+++. +.+.+++.. +++.+.+..+ .
T Consensus 2 aiIlaaG~g~Rl~plt~~~pK~llpi~g~~li~~~l~~l~~~-gi~~i~iv~~~~~~~i~~~~~~~~~~~~i~~~~~~~~ 80 (221)
T cd06422 2 AMILAAGLGTRMRPLTDTRPKPLVPVAGKPLIDHALDRLAAA-GIRRIVVNTHHLADQIEAHLGDSRFGLRITISDEPDE 80 (221)
T ss_pred EEEEcCCCCCccccccCCCCCceeeECCEEHHHHHHHHHHHC-CCCEEEEEccCCHHHHHHHHhcccCCceEEEecCCCc
Confidence 7999999999995 59999999999999999999998 69999999863 556665543 5665544332 2
Q ss_pred cCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEEeeeeCCCCCCCCCCCeEEEeCCCcc
Q 028257 120 CRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGY 198 (211)
Q Consensus 120 ~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v~~~~~~~~~~~d~~~~~~v~~~~~~ 198 (211)
..|...++..+++.+. .+.+++++||+++ +. .+..+++.+.+ ..+..+++..++... ......+..+.+|.
T Consensus 81 ~~g~~~~l~~~~~~~~--~~~~lv~~~D~i~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~g~v~~d~~~~ 152 (221)
T cd06422 81 LLETGGGIKKALPLLG--DEPFLVVNGDILW-DG-DLAPLLLLHAWRMDALLLLLPLVRNPG----HNGVGDFSLDADGR 152 (221)
T ss_pred ccccHHHHHHHHHhcC--CCCEEEEeCCeee-CC-CHHHHHHHHHhccCCCceEEEEEEcCC----CCCcceEEECCCCc
Confidence 3456678889999884 4789999999965 33 57777777642 334444444433211 11223456777788
Q ss_pred EEeeecCC
Q 028257 199 AIYFSRGL 206 (211)
Q Consensus 199 ~~~~~~~~ 206 (211)
+..|.+++
T Consensus 153 v~~~~~~~ 160 (221)
T cd06422 153 LRRGGGGA 160 (221)
T ss_pred EeecccCC
Confidence 77777654
No 51
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.59 E-value=3.5e-14 Score=128.49 Aligned_cols=116 Identities=24% Similarity=0.300 Sum_probs=83.7
Q ss_pred CcEEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHHc--CCeEeeCCcc-
Q 028257 48 SRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQF--GADVIMTSES- 119 (211)
Q Consensus 48 m~i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~~--~v~vi~~~~~- 119 (211)
|++.+||||||.|+||+ +|+|++++|+|||+|+++.+.+. +++++|+++ .+.+.+++.+. +++++..+++
T Consensus 1 m~~~aiIlAaG~GtRl~~~~pK~Llpi~gkPli~~~i~~l~~~--~~~i~Ivv~~~~~~i~~~~~~~~~~v~~~~~~~~~ 78 (430)
T PRK14359 1 MKLSIIILAAGKGTRMKSSLPKVLHTICGKPMLFYILKEAFAI--SDDVHVVLHHQKERIKEAVLEYFPGVIFHTQDLEN 78 (430)
T ss_pred CCccEEEEcCCCCccCCCCCCceeCEECCccHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHhcCCceEEEEecCcc
Confidence 56789999999999996 59999999999999999999975 577777664 46677766654 4555544322
Q ss_pred cCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEE
Q 028257 120 CRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFS 172 (211)
Q Consensus 120 ~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~ 172 (211)
..|...++.. +....|.++++++|+||++++.++.+++ ..++.+++
T Consensus 79 ~~gt~~al~~----~~~~~d~vlv~~gD~p~~~~~~l~~l~~---~~~~~~v~ 124 (430)
T PRK14359 79 YPGTGGALMG----IEPKHERVLILNGDMPLVEKDELEKLLE---NDADIVMS 124 (430)
T ss_pred CCCcHHHHhh----cccCCCeEEEEECCccCCCHHHHHHHHh---CCCCEEEE
Confidence 2343444433 2223689999999999999999888764 23454444
No 52
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=99.57 E-value=1.6e-13 Score=119.52 Aligned_cols=114 Identities=15% Similarity=0.162 Sum_probs=84.9
Q ss_pred cEEEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHH------------
Q 028257 49 RVVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQ------------ 108 (211)
Q Consensus 49 ~i~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~------------ 108 (211)
++.|||||||.|+||. +|+|+|++|+|+|+|+++.+..+ ++++|+|+++ .+.+.+++..
T Consensus 3 ~mkavILAaG~GTRL~PlT~~~PKpLvpV~gkPiI~~vl~~l~~~-Gi~~ivivv~~~~~~i~~~~~~~~~~~~~~~~~~ 81 (297)
T TIGR01105 3 NLKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAA-GIKEIVLVTHASKNAVENHFDTSYELESLLEQRV 81 (297)
T ss_pred ceEEEEECCCCCcccCcccCCCCceeeEECCEEHHHHHHHHHHHC-CCCEEEEEecCChHHHHHHHhchHHHHHHHHHhc
Confidence 5679999999999994 59999999999999999999987 6999999986 3555555421
Q ss_pred -------------cCCeEee-CCcccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCH-------HHHHHHHHHHHhC
Q 028257 109 -------------FGADVIM-TSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEP-------EIIDGVVKALQAA 166 (211)
Q Consensus 109 -------------~~v~vi~-~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~-------~~i~~li~~~~~~ 166 (211)
+++++.+ ..+...|...++..|.+.+. .+.++++.+|. +++. -.+..+++.+.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~i~~~~q~~~lGtg~Av~~a~~~l~--~~~flvv~gD~-l~~~~~~~~~~~~l~~li~~~~~~ 157 (297)
T TIGR01105 82 KRQLLAEVQSICPPGVTIMNVRQAQPLGLGHSILCARPVVG--DNPFVVVLPDI-IIDDATADPLRYNLAAMIARFNET 157 (297)
T ss_pred chhhhhhhhhcCCCCceEEEeeCCCcCchHHHHHHHHHHhC--CCCEEEEECCe-eccccccccchhHHHHHHHHHHHh
Confidence 2434422 22233466678889999884 35678888997 5543 3788888887543
No 53
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=99.55 E-value=2.6e-13 Score=111.13 Aligned_cols=145 Identities=21% Similarity=0.282 Sum_probs=101.2
Q ss_pred EEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHH---cCCeEeeC-Ccc
Q 028257 52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ---FGADVIMT-SES 119 (211)
Q Consensus 52 aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~---~~v~vi~~-~~~ 119 (211)
|||||||.|+||+ +|++++++|+|||+|+++.+..+ ++++++|+++. +.+.+.+.. ++..+... ...
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v~g~pli~~~l~~l~~~-g~~~i~vv~~~~~~~i~~~~~~~~~~~~~i~~~~~~~ 79 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPIAGKPILEYIIERLARA-GIDEIILVVGYLGEQIEEYFGDGSKFGVNIEYVVQEE 79 (217)
T ss_pred CEEecCCccccccccccCCCccccEECCeeHHHHHHHHHHHC-CCCEEEEEeccCHHHHHHHHcChhhcCceEEEEeCCC
Confidence 5899999999995 59999999999999999999997 49999999873 555555543 34444222 223
Q ss_pred cCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEEeeeeCCCCCCCCCCCeEEEeCCCcc
Q 028257 120 CRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGY 198 (211)
Q Consensus 120 ~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v~~~~~~~~~~~d~~~~~~v~~~~~~ 198 (211)
..|...++..+++.+ ..+.++++.||+ +++. .+..+++.+.+ +.+.++.+. +.. -..+.-.+..|++|.
T Consensus 80 ~~g~~~al~~~~~~~--~~~~~lv~~~D~-~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~v~~d~~~~ 149 (217)
T cd04181 80 PLGTAGAVRNAEDFL--GDDDFLVVNGDV-LTDL-DLSELLRFHREKGADATIAVK--EVE----DPSRYGVVELDDDGR 149 (217)
T ss_pred CCccHHHHHHhhhhc--CCCCEEEEECCe-ecCc-CHHHHHHHHHhcCCCEEEEEE--EcC----CCCcceEEEEcCCCc
Confidence 356678899999887 467899999999 4444 57777776643 344444433 321 112234456677788
Q ss_pred EEeeecCCC
Q 028257 199 AIYFSRGLI 207 (211)
Q Consensus 199 ~~~~~~~~~ 207 (211)
+..|.+++.
T Consensus 150 v~~~~ek~~ 158 (217)
T cd04181 150 VTRFVEKPT 158 (217)
T ss_pred EEEEEECCC
Confidence 888877653
No 54
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=99.54 E-value=3.2e-13 Score=113.29 Aligned_cols=146 Identities=16% Similarity=0.147 Sum_probs=100.0
Q ss_pred EEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc---HHHHHHHH---HcCCeEeeCCc
Q 028257 51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD---EKIAECCQ---QFGADVIMTSE 118 (211)
Q Consensus 51 ~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~---e~i~~~~~---~~~v~vi~~~~ 118 (211)
.+||||||.|+||. +|+|+|++|+|||+|+++.+..+ ++++|+|+++. +.+.+++. .+++++.+..+
T Consensus 2 ~~iIlAaG~gtRl~plt~~~pK~llpv~~~pli~~~l~~l~~~-gi~~i~vv~~~~~~~~~~~~l~~~~~~~~~i~~~~~ 80 (240)
T cd02538 2 KGIILAGGSGTRLYPLTKVVSKQLLPVYDKPMIYYPLSTLMLA-GIREILIISTPEDLPLFKELLGDGSDLGIRITYAVQ 80 (240)
T ss_pred eEEEEcCcCcccCCccccCCCceeeEECCEEhHHHHHHHHHHC-CCCEEEEEeCcchHHHHHHHHhcccccCceEEEeeC
Confidence 48999999999994 69999999999999999999987 69999887753 34555543 24555533222
Q ss_pred -ccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEEeeeeCCCCCCCCCCCeEEEeCCC
Q 028257 119 -SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKPEDAFDPNRVKCVVDNH 196 (211)
Q Consensus 119 -~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v~~~~~~~~~~~d~~~~~~v~~~~ 196 (211)
...|...++..+.+.+. .+.++++.+|+|+.+. .+.++++.+.+ ..+.++.. .++... ...-.+..|.+
T Consensus 81 ~~~~G~~~al~~a~~~~~--~~~~lv~~gD~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~g~v~~d~~ 151 (240)
T cd02538 81 PKPGGLAQAFIIGEEFIG--DDPVCLILGDNIFYGQ-GLSPILQRAAAQKEGATVFG--YEVNDP----ERYGVVEFDEN 151 (240)
T ss_pred CCCCCHHHHHHHHHHhcC--CCCEEEEECCEEEccH-HHHHHHHHHHhcCCCcEEEE--EECCch----hcCceEEecCC
Confidence 23455567888888774 4678999999987654 67888887753 34444332 232111 11233556777
Q ss_pred ccEEeeecCC
Q 028257 197 GYAIYFSRGL 206 (211)
Q Consensus 197 ~~~~~~~~~~ 206 (211)
|++..|.+++
T Consensus 152 g~v~~~~ekp 161 (240)
T cd02538 152 GRVLSIEEKP 161 (240)
T ss_pred CcEEEEEECC
Confidence 8888887654
No 55
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=1.8e-13 Score=122.05 Aligned_cols=146 Identities=21% Similarity=0.275 Sum_probs=106.8
Q ss_pred EEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHH---cCCeEeeC-Cc
Q 028257 51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQ---FGADVIMT-SE 118 (211)
Q Consensus 51 ~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~---~~v~vi~~-~~ 118 (211)
.|||||||.|+||. ||+|+|++|||||+|+++.|.+. ++++++|++. .+.+++++.+ ++.++.+. ..
T Consensus 3 kavILagG~GtRLrPlT~~~PKPllpI~gkPii~~~l~~L~~~-Gv~eivi~~~y~~~~i~~~~~d~~~~~~~I~y~~e~ 81 (358)
T COG1208 3 KAVILAGGYGTRLRPLTDDRPKPLLPIAGKPLIEYVLEALAAA-GVEEIVLVVGYLGEQIEEYFGDGEGLGVRITYVVEK 81 (358)
T ss_pred eEEEEeCCccccccccccCCCcccceeCCccHHHHHHHHHHHC-CCcEEEEEeccchHHHHHHHhcccccCCceEEEecC
Confidence 49999999999993 69999999999999999999986 6999999986 4777887765 24555332 22
Q ss_pred ccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeeeCCCCCCCCCCCeEEEeC-CCc
Q 028257 119 SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVD-NHG 197 (211)
Q Consensus 119 ~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~~~~~~~~d~~~~~~v~~-~~~ 197 (211)
...|...++.++.+.+. .+.|+++.+|. +.+.+ ++.+++.++++ ++..++..+.+... .+.-.+..+ .++
T Consensus 82 ~~lGTag~l~~a~~~l~--~~~f~v~~GDv-~~~~d-l~~l~~~~~~~-~~~~~~~~~~~~~~----~~~Gvv~~~~~~~ 152 (358)
T COG1208 82 EPLGTAGALKNALDLLG--GDDFLVLNGDV-LTDLD-LSELLEFHKKK-GALATIALTRVLDP----SEFGVVETDDGDG 152 (358)
T ss_pred CcCccHHHHHHHHHhcC--CCcEEEEECCe-eeccC-HHHHHHHHHhc-cCccEEEEEecCCC----CcCceEEecCCCc
Confidence 33455678899999884 37899999999 56665 99999998766 55555554443221 122233334 335
Q ss_pred cEEeeecCC
Q 028257 198 YAIYFSRGL 206 (211)
Q Consensus 198 ~~~~~~~~~ 206 (211)
.+..|..++
T Consensus 153 ~v~~f~ekp 161 (358)
T COG1208 153 RVVEFREKP 161 (358)
T ss_pred eEEEEEecC
Confidence 788888887
No 56
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=99.54 E-value=4.9e-13 Score=115.09 Aligned_cols=152 Identities=18% Similarity=0.183 Sum_probs=102.0
Q ss_pred EEEEecCCCCCCCC-------CccccccCC-eehHHHHHHHHHcCCCCCeEEEEcCcH---HHHHHHHH--cCCeEeeCC
Q 028257 51 VGIIPARFASSRFE-------GKPLVNILG-KPMIQRTWERSKLATTLDHLVVATDDE---KIAECCQQ--FGADVIMTS 117 (211)
Q Consensus 51 ~aIIlA~G~ssRlg-------~K~ll~l~G-kpLl~~~i~~l~~~~~id~IVVvt~~e---~i~~~~~~--~~v~vi~~~ 117 (211)
.+||||||.|+||. +|+|+++.| +|||+|+++++...+.+++|+|+++.+ .+.+++.+ .+..++..+
T Consensus 2 ~~vILAgG~GtRl~PlS~~~~PK~ll~l~g~~~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~~~~~~~~ii~ep 81 (274)
T cd02509 2 YPVILAGGSGTRLWPLSRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPEGLPEENIILEP 81 (274)
T ss_pred EEEEEcccccccCCcCCCCCCCceEeEcCCCCcHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHhhcCCCceEEECC
Confidence 48999999999992 599999998 999999999999875689999999853 34444443 234555543
Q ss_pred cccCCChHHHHHHHHhhcc--CCCEEEEEcCCCcCCCHHHHHHHHHHHHh--CCCeEEEEeeeeCCCCCCCCCCCeEEEe
Q 028257 118 ESCRNGTERCNEALQKLEK--KYDIVVNIQGDEPLIEPEIIDGVVKALQA--APDAVFSTAVTSLKPEDAFDPNRVKCVV 193 (211)
Q Consensus 118 ~~~~g~~~si~~al~~l~~--~~d~vlv~~~D~Pli~~~~i~~li~~~~~--~~d~vv~v~~~~~~~~~~~d~~~~~~v~ 193 (211)
...|+..++..++..+.. ..+.++++++|+++.+...+.++++++.+ ..+.++++..++..+++ ..-++..
T Consensus 82 -~~~gTa~ai~~a~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~vt~gi~p~~~~t----~yGyI~~ 156 (274)
T cd02509 82 -EGRNTAPAIALAALYLAKRDPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLVTFGIKPTRPET----GYGYIEA 156 (274)
T ss_pred -CCCCcHHHHHHHHHHHHhcCCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEEEEEeeecCCCC----CeEEEEe
Confidence 345666777777776642 35789999999998877777777654421 13445555444422211 2233444
Q ss_pred CCCc-----cEEeeecCCC
Q 028257 194 DNHG-----YAIYFSRGLI 207 (211)
Q Consensus 194 ~~~~-----~~~~~~~~~~ 207 (211)
+.++ .+..|.+++-
T Consensus 157 ~~~~~~~~~~V~~f~EKP~ 175 (274)
T cd02509 157 GEKLGGGVYRVKRFVEKPD 175 (274)
T ss_pred CCcCCCCceEEeEEEECcC
Confidence 4442 5777777653
No 57
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.54 E-value=3.8e-13 Score=111.50 Aligned_cols=153 Identities=16% Similarity=0.196 Sum_probs=99.4
Q ss_pred EEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHHc---C-----CeEe
Q 028257 51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQF---G-----ADVI 114 (211)
Q Consensus 51 ~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~~---~-----v~vi 114 (211)
.|||+|||.|+||. +|+|+|++|+|||+|+++.+.++ ++++|+|+++ .+.+.+++.+. + ..+.
T Consensus 2 ~aiIla~G~g~Rl~plt~~~pK~llpi~g~piI~~~l~~l~~~-Gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~i~ 80 (217)
T cd04197 2 QAVVLADSFNRRFRPLTKEKPRCLLPLANVPLIDYTLEFLALN-GVEEVFVFCCSHSDQIKEYIEKSKWSKPKSSLMIVI 80 (217)
T ss_pred eEEEEcCCCcccccccccCCCceeeEECCEehHHHHHHHHHHC-CCCeEEEEeCCCHHHHHHHHhhccccccccCcceEE
Confidence 48999999999995 59999999999999999999997 6999999886 46677766542 1 2222
Q ss_pred -eCCcccCCChHHHHHH--HHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhC----CCeEEEEeeeeCCCCC--CCC
Q 028257 115 -MTSESCRNGTERCNEA--LQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA----PDAVFSTAVTSLKPED--AFD 185 (211)
Q Consensus 115 -~~~~~~~g~~~si~~a--l~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~----~d~vv~v~~~~~~~~~--~~d 185 (211)
...+...+...++... ...+ .+.++++.+|. +....+..+++.+++. .++.+++..++..+.. ...
T Consensus 81 ~~~~~~~~~~~~al~~~~~~~~~---~~~flv~~gD~--i~~~dl~~~l~~h~~~~~~~~~a~~t~~~~~~~~~~~~~~~ 155 (217)
T cd04197 81 IIMSEDCRSLGDALRDLDAKGLI---RGDFILVSGDV--VSNIDLKEILEEHKERRKKDKNAIMTMVLKEASPPHRTRRT 155 (217)
T ss_pred EEeCCCcCccchHHHHHhhcccc---CCCEEEEeCCe--eeccCHHHHHHHHHHhhccccCceEEEEEEeCCCccccccC
Confidence 2222222222333221 1112 35689999997 4456788999988652 3555555555543221 111
Q ss_pred CCCeEEEeCCC-ccEEeeecCCCCC
Q 028257 186 PNRVKCVVDNH-GYAIYFSRGLIPY 209 (211)
Q Consensus 186 ~~~~~~v~~~~-~~~~~~~~~~~~~ 209 (211)
.+...++.|.+ +++++|.+++...
T Consensus 156 ~~~~vv~~d~~~~~v~~~~ekp~~~ 180 (217)
T cd04197 156 GEEFVIAVDPKTSRLLHYEELPGSK 180 (217)
T ss_pred CCceEEEEcCCCCcEEEEecccCCC
Confidence 12334555655 8999999986543
No 58
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.53 E-value=3.2e-13 Score=123.00 Aligned_cols=117 Identities=19% Similarity=0.223 Sum_probs=89.4
Q ss_pred EEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHHcCCeEeeCCcccCCChH
Q 028257 51 VGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCRNGTE 125 (211)
Q Consensus 51 ~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~~~v~vi~~~~~~~g~~~ 125 (211)
.|||||||.|+||+ +|+|++++|+|||+|+++.+.+. +++++|+++. +.+.++... ++.++..+ ...|...
T Consensus 2 ~avIlA~G~gtRl~~~~pK~l~~v~gkpli~~~l~~l~~~--~~~i~vv~~~~~~~i~~~~~~-~~~~~~~~-~~~g~~~ 77 (448)
T PRK14357 2 RALVLAAGKGTRMKSKIPKVLHKISGKPMINWVIDTAKKV--AQKVGVVLGHEAELVKKLLPE-WVKIFLQE-EQLGTAH 77 (448)
T ss_pred eEEEECCCCCccCCCCCCceeeEECCeeHHHHHHHHHHhc--CCcEEEEeCCCHHHHHHhccc-ccEEEecC-CCCChHH
Confidence 48999999999996 59999999999999999999975 4888888764 344443322 34554433 3346667
Q ss_pred HHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEE
Q 028257 126 RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFS 172 (211)
Q Consensus 126 si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~ 172 (211)
++..+++.+. +.+.++++++|+|+++...++++++.+.+ ..+.++.
T Consensus 78 ai~~a~~~l~-~~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~ 124 (448)
T PRK14357 78 AVMCARDFIE-PGDDLLILYGDVPLISENTLKRLIEEHNRKGADVTIL 124 (448)
T ss_pred HHHHHHHhcC-cCCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEE
Confidence 8888998874 35789999999999999999999998854 3444433
No 59
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=99.52 E-value=5e-13 Score=113.27 Aligned_cols=150 Identities=14% Similarity=0.123 Sum_probs=99.2
Q ss_pred EEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHH--------------
Q 028257 51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ-------------- 108 (211)
Q Consensus 51 ~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~-------------- 108 (211)
.+||||||.|+||. +|+++|++|+|||+|+++.+.++ ++++++|+++. +.+.++...
T Consensus 2 ~avIlAaG~gtRl~plt~~~pK~llpi~g~pli~~~l~~l~~~-gi~~v~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 80 (260)
T TIGR01099 2 KAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYVVEEAVEA-GIEDILIVTGRGKRAIEDHFDTSYELEHQLEKRGKE 80 (260)
T ss_pred eEEEEcccCcccCCCcccCCCceeEEECCEEHHHHHHHHHHhC-CCCEEEEEeCCcHHHHHHHhcccHHHHHHHHhhhhH
Confidence 48999999999994 59999999999999999999987 69999999963 444444321
Q ss_pred --------c--CCeEee-CCcccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCH-HHHHHHHHHHHhCCCeEEEEeee
Q 028257 109 --------F--GADVIM-TSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEP-EIIDGVVKALQAAPDAVFSTAVT 176 (211)
Q Consensus 109 --------~--~v~vi~-~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~-~~i~~li~~~~~~~d~vv~v~~~ 176 (211)
. +..+.+ ..+...|...++..+++.+ ..+.++++.+|+++... ..++.+++.+.++...++.+.
T Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~G~~~al~~~~~~~--~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~ii~~~-- 156 (260)
T TIGR01099 81 ELLKEVRSISPLATIFYVRQKEQKGLGHAVLCAEPFV--GDEPFAVILGDDIVVSEEPALKQMIDLYEKYGCSIIAVE-- 156 (260)
T ss_pred HHHHHhhhccccceEEEEecCCCCCHHHHHHHHHHhh--CCCCEEEEeccceecCCcHHHHHHHHHHHHhCCCEEEEE--
Confidence 0 122222 2223345567888888877 34679999999998766 489999998865433333332
Q ss_pred eCCCCCCCCCCCeEEEeC----CCccEEeeecCCC
Q 028257 177 SLKPEDAFDPNRVKCVVD----NHGYAIYFSRGLI 207 (211)
Q Consensus 177 ~~~~~~~~d~~~~~~v~~----~~~~~~~~~~~~~ 207 (211)
.+..+... ..-.+..| .++.+..|.+++.
T Consensus 157 ~~~~~~~~--~~g~v~~d~~~~~~~~v~~~~Ekp~ 189 (260)
T TIGR01099 157 EVPKEEVS--KYGVIDGEGVEEGLYEIKDMVEKPK 189 (260)
T ss_pred ECChhhcc--cCceEEeccccCCceeEEEEEECCC
Confidence 22111111 11223333 2357778887653
No 60
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=99.52 E-value=4.5e-13 Score=111.42 Aligned_cols=115 Identities=25% Similarity=0.317 Sum_probs=86.7
Q ss_pred EEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHH-cCCeEeeCCcc-cC
Q 028257 52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ-FGADVIMTSES-CR 121 (211)
Q Consensus 52 aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~-~~v~vi~~~~~-~~ 121 (211)
|||||||.|+||+ +|++++++|+|||+|+++.+.++ ++++|+|+++. +.+.+++.. .++.++.++.. ..
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~~g~~li~~~l~~l~~~-gi~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEINGKPLLERQIETLKEA-GIDDIVIVTGYKKEQIEELLKKYPNIKFVYNPDYAET 79 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeECCEEHHHHHHHHHHHC-CCceEEEEeccCHHHHHHHHhccCCeEEEeCcchhhh
Confidence 5899999999995 59999999999999999999987 69999999873 555665544 35666665543 34
Q ss_pred CChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEe
Q 028257 122 NGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTA 174 (211)
Q Consensus 122 g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~ 174 (211)
|...++..+++.+ .+.++++.+|++ ++.+.++.+++ ...+.++.+.
T Consensus 80 g~~~s~~~~~~~~---~~~~lv~~~D~~-~~~~~~~~~~~---~~~~~~~~~~ 125 (229)
T cd02523 80 NNIYSLYLARDFL---DEDFLLLEGDVV-FDPSILERLLS---SPADNAILVD 125 (229)
T ss_pred CcHHHHHHHHHHc---CCCEEEEeCCEe-cCHHHHHHHHc---CCCCCeEEEc
Confidence 6678888898887 367999999996 46766665543 2345444443
No 61
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.52 E-value=3.7e-13 Score=111.99 Aligned_cols=143 Identities=21% Similarity=0.213 Sum_probs=95.0
Q ss_pred EEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHH-----HHHHHH--cCCeEeeCCc
Q 028257 52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKI-----AECCQQ--FGADVIMTSE 118 (211)
Q Consensus 52 aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i-----~~~~~~--~~v~vi~~~~ 118 (211)
+||||||.|+||. +|+|++++|+|||+|+++.+.+++ +++++|+++.+.. ...... .++.++..+.
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i~g~pli~~~l~~l~~~g-~~~ivvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 79 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEVDGKPMIEWVIESLAKIF-DSRFIFICRDEHNTKFHLDESLKLLAPNATVVELDG 79 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEECCEEHHHHHHHhhhccC-CceEEEEEChHHhhhhhHHHHHHHhCCCCEEEEeCC
Confidence 4899999999994 599999999999999999999884 8999998864332 222221 2455555544
Q ss_pred ccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEEeeeeCCCCCCCCCCCeEEEeCCCc
Q 028257 119 SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKPEDAFDPNRVKCVVDNHG 197 (211)
Q Consensus 119 ~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v~~~~~~~~~~~d~~~~~~v~~~~~ 197 (211)
...|+..++..|+..+. ..+.++++.||+ +++.+ +..++..+.+ ..+..+ ..... .+.+...+..|++|
T Consensus 80 ~~~g~~~~l~~a~~~l~-~~~~~lv~~~D~-i~~~~-~~~~~~~~~~~~~~~~i--~~~~~-----~~~~~~~v~~d~~~ 149 (231)
T cd04183 80 ETLGAACTVLLAADLID-NDDPLLIFNCDQ-IVESD-LLAFLAAFRERDLDGGV--LTFFS-----SHPRWSYVKLDENG 149 (231)
T ss_pred CCCcHHHHHHHHHhhcC-CCCCEEEEecce-eeccC-HHHHHHHhhccCCceEE--EEEeC-----CCCCeEEEEECCCC
Confidence 55566788888888873 246799999998 55554 5556655533 223222 11111 12233455667777
Q ss_pred cEEeeecC
Q 028257 198 YAIYFSRG 205 (211)
Q Consensus 198 ~~~~~~~~ 205 (211)
.+..|..+
T Consensus 150 ~v~~~~ek 157 (231)
T cd04183 150 RVIETAEK 157 (231)
T ss_pred CEEEeEEc
Confidence 77777544
No 62
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=99.52 E-value=5.2e-13 Score=116.10 Aligned_cols=146 Identities=20% Similarity=0.201 Sum_probs=99.3
Q ss_pred cEEEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC---cHHHHHHHH---HcCCeE--e
Q 028257 49 RVVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD---DEKIAECCQ---QFGADV--I 114 (211)
Q Consensus 49 ~i~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~---~e~i~~~~~---~~~v~v--i 114 (211)
...+||||||.|+||. +|+|+|++|||||+|.++.+..+ ++++|+|++. .+.+.++.. .+++++ .
T Consensus 3 ~~kaIILAgG~GtRL~PlT~~~pK~Llpv~gkPmI~~~l~~l~~a-Gi~~I~ii~~~~~~~~~~~~l~~g~~~g~~i~y~ 81 (292)
T PRK15480 3 TRKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLA-GIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYK 81 (292)
T ss_pred ceEEEEECCCcccccCcccCCCCceEeEECCEEHHHHHHHHHHHC-CCCEEEEEecCCchHHHHHHHcCccccCceeEEE
Confidence 4679999999999994 59999999999999999999988 6999987653 245555543 345544 3
Q ss_pred eCCcccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEEeeeeCCCCCCCCCCC-eEEE
Q 028257 115 MTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKPEDAFDPNR-VKCV 192 (211)
Q Consensus 115 ~~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v~~~~~~~~~~~d~~~-~~~v 192 (211)
..+ ...|...++..+.+.+. .+.++++.+|..|.+ ..+..+++.+.+ ..+.++... ++ -|+.+ -.+.
T Consensus 82 ~q~-~~~Gta~Al~~a~~~i~--~~~~~lv~gD~i~~~-~~l~~ll~~~~~~~~~~tv~~~--~v-----~~p~~yGvv~ 150 (292)
T PRK15480 82 VQP-SPDGLAQAFIIGEEFIG--GDDCALVLGDNIFYG-HDLPKLMEAAVNKESGATVFAY--HV-----NDPERYGVVE 150 (292)
T ss_pred ECC-CCCCHHHHHHHHHHHhC--CCCEEEEECCeeeec-cCHHHHHHHHHhCCCCeEEEEE--Ec-----CCcccCcEEE
Confidence 332 23355567788888774 344777889997754 468888887743 334443322 21 13332 2345
Q ss_pred eCCCccEEeeecCC
Q 028257 193 VDNHGYAIYFSRGL 206 (211)
Q Consensus 193 ~~~~~~~~~~~~~~ 206 (211)
.|++|.+..|.+++
T Consensus 151 ~d~~g~v~~i~EKP 164 (292)
T PRK15480 151 FDQNGTAISLEEKP 164 (292)
T ss_pred ECCCCcEEEEEECC
Confidence 67778888887665
No 63
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=99.52 E-value=5.8e-13 Score=111.24 Aligned_cols=148 Identities=15% Similarity=0.155 Sum_probs=100.8
Q ss_pred EEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHH----cCCeEeeCC-
Q 028257 51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ----FGADVIMTS- 117 (211)
Q Consensus 51 ~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~----~~v~vi~~~- 117 (211)
.+||+|||.|+||+ +|+|++++|+|||+|+++.+.+. ++++++|++++ +.+.++..+ .++.+++..
T Consensus 2 ~~iIlAaG~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~~-g~~~v~iv~~~~~~~~~~~l~~~~~~~~~~i~~~~~ 80 (233)
T cd06425 2 KALILVGGYGTRLRPLTLTVPKPLVEFCNKPMIEHQIEALAKA-GVKEIILAVNYRPEDMVPFLKEYEKKLGIKITFSIE 80 (233)
T ss_pred cEEEecCCCccccCccccCCCCccCeECCcchHHHHHHHHHHC-CCcEEEEEeeeCHHHHHHHHhcccccCCeEEEeccC
Confidence 38999999999994 59999999999999999999987 68999998863 455555442 455654432
Q ss_pred cccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEEeeeeCCCCCCCCCCCeEEEeCC-
Q 028257 118 ESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKPEDAFDPNRVKCVVDN- 195 (211)
Q Consensus 118 ~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v~~~~~~~~~~~d~~~~~~v~~~- 195 (211)
....|...++..+.+.+....+.++++.||.. .+ ..+..+++.+++ ..+.++.+. +..+. ...-.+..++
T Consensus 81 ~~~~G~~~al~~a~~~~~~~~~~~lv~~~D~~-~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~g~v~~d~~ 152 (233)
T cd06425 81 TEPLGTAGPLALARDLLGDDDEPFFVLNSDVI-CD-FPLAELLDFHKKHGAEGTILVT--KVEDP----SKYGVVVHDEN 152 (233)
T ss_pred CCCCccHHHHHHHHHHhccCCCCEEEEeCCEe-eC-CCHHHHHHHHHHcCCCEEEEEE--EcCCc----cccCeEEEcCC
Confidence 23346667888898888532356899999984 33 346888887754 344444433 32211 1122334455
Q ss_pred CccEEeeecCCC
Q 028257 196 HGYAIYFSRGLI 207 (211)
Q Consensus 196 ~~~~~~~~~~~~ 207 (211)
+|+++.|.+++.
T Consensus 153 ~~~v~~~~ekp~ 164 (233)
T cd06425 153 TGRIERFVEKPK 164 (233)
T ss_pred CCEEEEEEECCC
Confidence 678888877643
No 64
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.51 E-value=9.3e-13 Score=109.08 Aligned_cols=110 Identities=18% Similarity=0.204 Sum_probs=84.4
Q ss_pred EEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc---HHHHHHHHHc------CCeE-e
Q 028257 51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD---EKIAECCQQF------GADV-I 114 (211)
Q Consensus 51 ~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~---e~i~~~~~~~------~v~v-i 114 (211)
.|||+|||.|+||. +|+|++++|+|||+|+++.+.+. ++++|+|++++ +.++++.+.+ ...+ +
T Consensus 2 ~aVILAgG~g~R~~plt~~~pK~Llpv~g~pli~~~l~~l~~~-g~~~iivv~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 80 (214)
T cd04198 2 QAVILAGGGGSRLYPLTDNIPKALLPVANKPMIWYPLDWLEKA-GFEDVIVVVPEEEQAEISTYLRSFPLNLKQKLDEVT 80 (214)
T ss_pred EEEEEeCCCCCcCCccccCCCcccCEECCeeHHHHHHHHHHHC-CCCeEEEEECHHHHHHHHHHHHhcccccCcceeEEE
Confidence 58999999999994 59999999999999999999986 69999999974 3455655543 1223 2
Q ss_pred eCCcccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhC
Q 028257 115 MTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA 166 (211)
Q Consensus 115 ~~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~ 166 (211)
..+....|...++..+.+.+ .+.++++.|| ++....+..+++.+++.
T Consensus 81 ~~~~~~~gt~~al~~~~~~i---~~d~lv~~~D--~i~~~~l~~~l~~h~~~ 127 (214)
T cd04198 81 IVLDEDMGTADSLRHIRKKI---KKDFLVLSCD--LITDLPLIELVDLHRSH 127 (214)
T ss_pred ecCCCCcChHHHHHHHHhhc---CCCEEEEeCc--cccccCHHHHHHHHhcc
Confidence 33334445567888888876 3469999999 57777899999988654
No 65
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=99.51 E-value=4.3e-13 Score=116.28 Aligned_cols=144 Identities=20% Similarity=0.216 Sum_probs=98.3
Q ss_pred EEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc---HHHHHHHH---HcCCeEeeCCc-
Q 028257 52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD---EKIAECCQ---QFGADVIMTSE- 118 (211)
Q Consensus 52 aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~---e~i~~~~~---~~~v~vi~~~~- 118 (211)
+||||||.|+||. +|+|+|++|||||+|+++.+..+ ++++|+|++.+ +.+.++.. .+++++.+..+
T Consensus 2 aIILAgG~GtRL~plT~~~pK~Llpv~gkPmI~~~L~~l~~a-Gi~~I~iv~~~~~~~~~~~~lg~g~~~g~~i~~~~q~ 80 (286)
T TIGR01207 2 GIILAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSTLMLA-GIRDILIISTPQDTPRFQQLLGDGSQWGVNLSYAVQP 80 (286)
T ss_pred EEEECCCCCccCCcccCCCCceeeEECCEEhHHHHHHHHHHC-CCCEEEEEecCCcHHHHHHHhccccccCceEEEEEcc
Confidence 7999999999994 59999999999999999999987 69999877642 44555443 24555533222
Q ss_pred ccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEEeeeeCCCCCCCCCC-CeEEEeCCC
Q 028257 119 SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKPEDAFDPN-RVKCVVDNH 196 (211)
Q Consensus 119 ~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v~~~~~~~~~~~d~~-~~~~v~~~~ 196 (211)
...|...++..+.+.+. .+.++++.+|++|.+ ..+..+++.+.+ ..+.++.. .++. |+. .-.+..|.+
T Consensus 81 ~~~Gta~al~~a~~~l~--~~~~~li~gD~i~~~-~~l~~ll~~~~~~~~~~ti~~--~~v~-----~p~~yGvv~~d~~ 150 (286)
T TIGR01207 81 SPDGLAQAFIIGEDFIG--GDPSALVLGDNIFYG-HDLSDLLKRAAARESGATVFA--YQVS-----DPERYGVVEFDSN 150 (286)
T ss_pred CCCCHHHHHHHHHHHhC--CCCEEEEECCEeccc-cCHHHHHHHHHhcCCCcEEEE--EEcc-----CHHHCceEEECCC
Confidence 23455678888988884 356777789998755 578888887643 33443322 2211 232 234456677
Q ss_pred ccEEeeecCC
Q 028257 197 GYAIYFSRGL 206 (211)
Q Consensus 197 ~~~~~~~~~~ 206 (211)
|.+..|..++
T Consensus 151 g~V~~i~EKp 160 (286)
T TIGR01207 151 GRAISIEEKP 160 (286)
T ss_pred CeEEEEEECC
Confidence 7887777664
No 66
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=99.51 E-value=2.1e-13 Score=114.17 Aligned_cols=150 Identities=22% Similarity=0.282 Sum_probs=103.2
Q ss_pred EEEEecCCCCCCCC------CccccccCCe-ehHHHHHHHHHcCCCCCeE-EEEcC--cHHHHHHHHH---cCCeE--ee
Q 028257 51 VGIIPARFASSRFE------GKPLVNILGK-PMIQRTWERSKLATTLDHL-VVATD--DEKIAECCQQ---FGADV--IM 115 (211)
Q Consensus 51 ~aIIlA~G~ssRlg------~K~ll~l~Gk-pLl~~~i~~l~~~~~id~I-VVvt~--~e~i~~~~~~---~~v~v--i~ 115 (211)
.+||||||.|+||. +|+|+++.|+ |||+|+++.+.++ +++++ +|++. .+.+.++... +++++ +.
T Consensus 1 kavIla~G~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~~-g~~~ii~V~~~~~~~~i~~~~~~~~~~~~~i~~i~ 79 (248)
T PF00483_consen 1 KAVILAGGKGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLANA-GIKEIIVVVNGYKEEQIEEHLGSGYKFGVKIEYIV 79 (248)
T ss_dssp EEEEEEESCCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHHT-TCSEEEEEEETTTHHHHHHHHTTSGGGTEEEEEEE
T ss_pred CEEEECCCCCccCchhhhccccccceecCCCcchhhhhhhhccc-CCceEEEEEeecccccccccccccccccccceeee
Confidence 38999999999994 5999999999 9999999999997 69994 55553 3556666643 34333 34
Q ss_pred CCcccCCChHHHHHHHHhhccC--CCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEEeeeeCCCCCCCCCCCeEEE
Q 028257 116 TSESCRNGTERCNEALQKLEKK--YDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKPEDAFDPNRVKCV 192 (211)
Q Consensus 116 ~~~~~~g~~~si~~al~~l~~~--~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v~~~~~~~~~~~d~~~~~~v 192 (211)
.+. ..|...++..+...+..+ .+.++++++|. +.+. .+..+++.+.+ +.+..+.+...+..+ ....-.+.
T Consensus 80 ~~~-~~Gta~al~~a~~~i~~~~~~~~~lv~~gD~-i~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~g~v~ 152 (248)
T PF00483_consen 80 QPE-PLGTAGALLQALDFIEEEDDDEDFLVLNGDI-IFDD-DLQDMLEFHRESNADGTVTLLVVPVED----PSRYGVVE 152 (248)
T ss_dssp ESS-SSCHHHHHHHTHHHHTTSEE-SEEEEETTEE-EEST-THHHHHHHHHHHSSCESEEEEEEESSG----GGGSEEEE
T ss_pred ccc-ccchhHHHHHHHHHhhhccccceEEEEeccc-cccc-hhhhHHHhhhccccccccccccccccc----cccceeee
Confidence 332 235567888888887522 23599999999 4444 88999988854 343334444333211 22345677
Q ss_pred eCCCccEEeeecCCCC
Q 028257 193 VDNHGYAIYFSRGLIP 208 (211)
Q Consensus 193 ~~~~~~~~~~~~~~~~ 208 (211)
.|.+|.+..|.+++..
T Consensus 153 ~d~~~~V~~~~EKP~~ 168 (248)
T PF00483_consen 153 VDEDGRVIRIVEKPDN 168 (248)
T ss_dssp EETTSEEEEEEESCSS
T ss_pred eccceeEEEEeccCcc
Confidence 7788899999887654
No 67
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=99.49 E-value=1.6e-12 Score=108.30 Aligned_cols=118 Identities=24% Similarity=0.274 Sum_probs=85.7
Q ss_pred EEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHH---cCCeEee-CCc
Q 028257 51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ---FGADVIM-TSE 118 (211)
Q Consensus 51 ~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~---~~v~vi~-~~~ 118 (211)
.+||||||.|+||+ +|+|++++|+|||+|+++.+.++ ++++++|+++. +.+.+++.. ++.++.. ...
T Consensus 2 ~avIlAaG~g~Rl~plt~~~pK~l~~i~g~~li~~~l~~l~~~-~~~~i~vv~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 80 (236)
T cd04189 2 KGLILAGGKGTRLRPLTYTRPKQLIPVAGKPIIQYAIEDLREA-GIEDIGIVVGPTGEEIKEALGDGSRFGVRITYILQE 80 (236)
T ss_pred eEEEECCCccccccccccCCCceeeEECCcchHHHHHHHHHHC-CCCEEEEEcCCCHHHHHHHhcchhhcCCeEEEEECC
Confidence 48999999999994 69999999999999999999987 59999998864 556665543 3444422 222
Q ss_pred ccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEE
Q 028257 119 SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFST 173 (211)
Q Consensus 119 ~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v 173 (211)
...|...++..|+..+. .+.++++.+|+.+ +. .+..+++.+.+ ..+.++.+
T Consensus 81 ~~~g~~~sl~~a~~~i~--~~~~li~~~D~~~-~~-~~~~~~~~~~~~~~~~~~~~ 132 (236)
T cd04189 81 EPLGLAHAVLAARDFLG--DEPFVVYLGDNLI-QE-GISPLVRDFLEEDADASILL 132 (236)
T ss_pred CCCChHHHHHHHHHhcC--CCCEEEEECCeec-Cc-CHHHHHHHHHhcCCceEEEE
Confidence 33466678888888874 4568889999964 44 56777777643 34544443
No 68
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=99.49 E-value=9.5e-13 Score=112.07 Aligned_cols=119 Identities=18% Similarity=0.236 Sum_probs=87.5
Q ss_pred EEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHH----------c---
Q 028257 51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ----------F--- 109 (211)
Q Consensus 51 ~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~----------~--- 109 (211)
.+||||||.|+||. +|+++|++|+|||+|+++.+.++ ++++|+|+++. +.+.+++.. .
T Consensus 2 kaiIlAaG~gtRl~plt~~~pK~llpv~gkpli~~~l~~l~~~-gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 80 (267)
T cd02541 2 KAVIPAAGLGTRFLPATKAIPKEMLPIVDKPVIQYIVEEAVAA-GIEDIIIVTGRGKRAIEDHFDRSYELEETLEKKGKT 80 (267)
T ss_pred eEEEEcCCCCccCCCcccCCCceeeEECCEEHHHHHHHHHHHC-CCCEEEEEeCCchHHHHHHhCCcHHHHHHHHhcccH
Confidence 48999999999995 59999999999999999999987 69999999974 334433311 0
Q ss_pred -----------CCeE-eeCCcccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHH-HHHHHHHHHHhCCCeEEE
Q 028257 110 -----------GADV-IMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPE-IIDGVVKALQAAPDAVFS 172 (211)
Q Consensus 110 -----------~v~v-i~~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~-~i~~li~~~~~~~d~vv~ 172 (211)
+.++ +...+...|...++..+++.+. .+.++++.+|+++...+ .++++++.+.+....++.
T Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~~~~~i~--~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~~~~ 154 (267)
T cd02541 81 DLLEEVRIISDLANIHYVRQKEPLGLGHAVLCAKPFIG--DEPFAVLLGDDLIDSKEPCLKQLIEAYEKTGASVIA 154 (267)
T ss_pred HHhhhhhcccCCceEEEEEcCCCCChHHHHHHHHHHhC--CCceEEEECCeEEeCCchHHHHHHHHHHHhCCCEEE
Confidence 2333 2222233566678888998884 36799999999887664 799999988643333333
No 69
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=99.48 E-value=9.9e-13 Score=111.71 Aligned_cols=143 Identities=21% Similarity=0.254 Sum_probs=101.7
Q ss_pred EEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc---HHHHHHH---HHcCCeEeeCCcc
Q 028257 52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD---EKIAECC---QQFGADVIMTSES 119 (211)
Q Consensus 52 aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~---e~i~~~~---~~~~v~vi~~~~~ 119 (211)
+||||||.|||+- +|+|+|+.+||||.|.++++..+ ++++|.|++.. +.++++. .++++++.+.-++
T Consensus 3 giILAgG~GTRL~PlT~~~~KqLlpV~~KPmi~y~l~~L~~a-GI~dI~II~~~~~~~~~~~llGdgs~~gv~itY~~Q~ 81 (286)
T COG1209 3 GVILAGGSGTRLRPLTRVVPKQLLPVYDKPMIYYPLETLMLA-GIRDILIVVGPEDKPTFKELLGDGSDFGVDITYAVQP 81 (286)
T ss_pred cEEecCcCccccccccccCCcccceecCcchhHhHHHHHHHc-CCceEEEEecCCchhhhhhhhcCccccCcceEEEecC
Confidence 8999999999993 59999999999999999999998 69999888864 4455554 2467666443233
Q ss_pred cCCCh-HHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEEeeeeCCCCCCCCCCCeE-EEeCCC
Q 028257 120 CRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKPEDAFDPNRVK-CVVDNH 196 (211)
Q Consensus 120 ~~g~~-~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v~~~~~~~~~~~d~~~~~-~v~~~~ 196 (211)
.+.+. .++..|-+.+ .++.|+++.+|.-|.. .+.++++.+.+ ..++.+-.. + +-||+++- +..|.+
T Consensus 82 ~p~GlA~Av~~a~~fv--~~~~f~l~LGDNi~~~--~l~~~~~~~~~~~~ga~i~~~--~-----V~dP~rfGV~e~d~~ 150 (286)
T COG1209 82 EPDGLAHAVLIAEDFV--GDDDFVLYLGDNIFQD--GLSELLEHFAEEGSGATILLY--E-----VDDPSRYGVVEFDED 150 (286)
T ss_pred CCCcHHHHHHHHHhhc--CCCceEEEecCceecc--ChHHHHHHHhccCCCcEEEEE--E-----cCCcccceEEEEcCC
Confidence 33454 5666777777 4688999999996655 78888887753 344443322 2 22565444 556667
Q ss_pred ccEEeeecCC
Q 028257 197 GYAIYFSRGL 206 (211)
Q Consensus 197 ~~~~~~~~~~ 206 (211)
|+++..-++|
T Consensus 151 ~~v~~l~EKP 160 (286)
T COG1209 151 GKVIGLEEKP 160 (286)
T ss_pred CcEEEeEECC
Confidence 7777777664
No 70
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.48 E-value=1.5e-12 Score=117.71 Aligned_cols=155 Identities=16% Similarity=0.098 Sum_probs=104.7
Q ss_pred CCCcEEEEEecCCCCCCCC------CccccccCCe-ehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHH-cC-----
Q 028257 46 FRSRVVGIIPARFASSRFE------GKPLVNILGK-PMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQ-FG----- 110 (211)
Q Consensus 46 ~~m~i~aIIlA~G~ssRlg------~K~ll~l~Gk-pLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~-~~----- 110 (211)
+|.++.|||||||.|+||. +|+|+|++|+ |||+|+++.+.++ ++++|+|+++ .+.+.+++.. +.
T Consensus 2 ~~~~~~avILAaG~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~-Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~ 80 (407)
T PRK00844 2 AMPKVLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNS-GYLRIYVLTQYKSHSLDRHISQTWRLSGLL 80 (407)
T ss_pred CCCceEEEEECCCCCCccchhhcCCcccceeeCCcceEhHHHHHHHHHC-CCCEEEEEeccCHHHHHHHHHhCcCccccC
Confidence 4567889999999999995 5999999998 9999999999997 6999999986 4566666542 21
Q ss_pred CeEee-CCc-------ccCCChHHHHHHHHhhccC-CCEEEEEcCCCcCCCHHHHHHHHHHHHhC-CCeEEEEeeeeCCC
Q 028257 111 ADVIM-TSE-------SCRNGTERCNEALQKLEKK-YDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKP 180 (211)
Q Consensus 111 v~vi~-~~~-------~~~g~~~si~~al~~l~~~-~d~vlv~~~D~Pli~~~~i~~li~~~~~~-~d~vv~v~~~~~~~ 180 (211)
..++. .+. ...|...++..+++.+..+ .++++++.+|. + ....+.++++.+.++ .+.++.+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~lGta~al~~a~~~i~~~~~~~~lv~~gD~-v-~~~dl~~l~~~h~~~~~~~ti~~~~~~~~~ 158 (407)
T PRK00844 81 GNYITPVPAQQRLGKRWYLGSADAIYQSLNLIEDEDPDYVVVFGADH-V-YRMDPRQMVDFHIESGAGVTVAAIRVPREE 158 (407)
T ss_pred CCeEEECCcccCCCCCcccCCHHHHHHHHHHHHhcCCCEEEEecCCE-E-EcCCHHHHHHHHHhcCCcEEEEEEecchHH
Confidence 11221 110 1245567788888887432 26799999998 3 445788888887543 44444433211111
Q ss_pred CCCCCCCCeEEEeCCCccEEeeecCCC
Q 028257 181 EDAFDPNRVKCVVDNHGYAIYFSRGLI 207 (211)
Q Consensus 181 ~~~~d~~~~~~v~~~~~~~~~~~~~~~ 207 (211)
. .+.-.+..|++|.+..|..++.
T Consensus 159 --~--~~~Gvv~~d~~g~v~~~~eKp~ 181 (407)
T PRK00844 159 --A--SAFGVIEVDPDGRIRGFLEKPA 181 (407)
T ss_pred --c--ccCCEEEECCCCCEEEEEECCC
Confidence 1 1233455677788888876653
No 71
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.47 E-value=1.5e-12 Score=107.29 Aligned_cols=143 Identities=14% Similarity=0.169 Sum_probs=92.2
Q ss_pred EEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHH---cCCeEee-CCcc
Q 028257 52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ---FGADVIM-TSES 119 (211)
Q Consensus 52 aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~---~~v~vi~-~~~~ 119 (211)
+||||||.|+||+ +|+|++++|+|||+|+++.+... ++++++|++++ +.+.++..+ ++.++.+ ....
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~~g~pli~~~l~~l~~~-~~~~iivv~~~~~~~i~~~~~~~~~~~~~i~~~~~~~ 79 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKVGGKPILETIIDRFIAQ-GFRNFYISVNYLAEMIEDYFGDGSKFGVNISYVREDK 79 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeECCcchHHHHHHHHHHC-CCcEEEEECccCHHHHHHHHCCccccCccEEEEECCC
Confidence 5899999999994 59999999999999999999987 69999999874 445555432 3444432 2222
Q ss_pred cCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhC-CCeEEEEeeeeCCCCCCCCCCCeEEEeCCCcc
Q 028257 120 CRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGY 198 (211)
Q Consensus 120 ~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~-~d~vv~v~~~~~~~~~~~d~~~~~~v~~~~~~ 198 (211)
..|...++..+.+.. .+.+++++||. +....++.+++.+.+. .+.++.+. +..+. ...-.+..| ++.
T Consensus 80 ~~g~~~~l~~~~~~~---~~~~lv~~~D~--i~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~----~~~g~~~~d-~~~ 147 (220)
T cd06426 80 PLGTAGALSLLPEKP---TDPFLVMNGDI--LTNLNYEHLLDFHKENNADATVCVR--EYEVQ----VPYGVVETE-GGR 147 (220)
T ss_pred CCcchHHHHHHHhhC---CCCEEEEcCCE--eeccCHHHHHHHHHhcCCCEEEEEE--EcCCC----CcceEEEEC-CCE
Confidence 334444554444332 57899999996 4456888999887643 34444332 21111 111122234 367
Q ss_pred EEeeecCCC
Q 028257 199 AIYFSRGLI 207 (211)
Q Consensus 199 ~~~~~~~~~ 207 (211)
+..|.+++.
T Consensus 148 v~~~~ek~~ 156 (220)
T cd06426 148 ITSIEEKPT 156 (220)
T ss_pred EEEEEECCC
Confidence 777776643
No 72
>PRK10122 GalU regulator GalF; Provisional
Probab=99.47 E-value=3.5e-12 Score=111.08 Aligned_cols=114 Identities=15% Similarity=0.182 Sum_probs=83.7
Q ss_pred CcEEEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHH-----------
Q 028257 48 SRVVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ----------- 108 (211)
Q Consensus 48 m~i~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~----------- 108 (211)
.++.+||||||.|+||. +|+|+|++|+|+|+|+++.+.++ ++++|+|+++. +.+.+++..
T Consensus 2 ~~mkavIlAaG~GtRl~PlT~~~PK~llpi~gkpiI~~~l~~l~~~-Gi~~i~iv~~~~~~~i~~~~~~~~~l~~~~~~~ 80 (297)
T PRK10122 2 TNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAA-GIKEIVLVTHASKNAVENHFDTSYELESLLEQR 80 (297)
T ss_pred CceEEEEECCcCCcccCcccCCCCceeeEECCEEHHHHHHHHHHHC-CCCEEEEEcCCChHHHHHHHhcchhHHHHHhhc
Confidence 35679999999999995 59999999999999999999997 69999999863 445544421
Q ss_pred --------------cCCeE--eeCCcccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHH-------HHHHHHHHHHh
Q 028257 109 --------------FGADV--IMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPE-------IIDGVVKALQA 165 (211)
Q Consensus 109 --------------~~v~v--i~~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~-------~i~~li~~~~~ 165 (211)
++.++ +..+ ...|...++..+.+.+. .+.++++.+|. +++.+ .+.++++.+.+
T Consensus 81 ~k~~~l~~~~~~~~~~~~i~~~~q~-~~lGtg~al~~a~~~l~--~~~fvvi~gD~-l~~~~~~~~~~~dl~~li~~h~~ 156 (297)
T PRK10122 81 VKRQLLAEVQSICPPGVTIMNVRQG-QPLGLGHSILCARPAIG--DNPFVVVLPDV-VIDDASADPLRYNLAAMIARFNE 156 (297)
T ss_pred chhhhHHhhhhccCCCceEEEeecC-CcCchHHHHHHHHHHcC--CCCEEEEECCe-eccCccccccchhHHHHHHHHHH
Confidence 23333 2222 23455677888888873 34577777998 66532 68889988854
Q ss_pred C
Q 028257 166 A 166 (211)
Q Consensus 166 ~ 166 (211)
+
T Consensus 157 ~ 157 (297)
T PRK10122 157 T 157 (297)
T ss_pred h
Confidence 3
No 73
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.46 E-value=1.7e-12 Score=115.92 Aligned_cols=151 Identities=13% Similarity=0.163 Sum_probs=101.5
Q ss_pred CcEEEEEecCCCCCCCC------CccccccCCe-ehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHH---cC-----
Q 028257 48 SRVVGIIPARFASSRFE------GKPLVNILGK-PMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ---FG----- 110 (211)
Q Consensus 48 m~i~aIIlA~G~ssRlg------~K~ll~l~Gk-pLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~---~~----- 110 (211)
.++.|||||||.|+||. +|+|+|++|+ |||+|+++.+.++ ++++|+|+++. +.+.+++.+ ++
T Consensus 2 ~~m~avILAaG~GtRl~plT~~~PK~llpv~gk~pli~~~l~~l~~~-Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~ 80 (380)
T PRK05293 2 KEMLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANS-GIDTVGVLTQYQPLELNNHIGIGSPWDLDRIN 80 (380)
T ss_pred CcEEEEEECCCCCcccchhhcCCccceeeeCCceeehhHHHHHHHhC-CCCEEEEEecCCHHHHHHHHhCCCcccccCCC
Confidence 45789999999999994 5999999999 8999999999987 69999999974 556666532 22
Q ss_pred --CeEe--eCCc----ccCCChHHHHHHHHhhccC-CCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEEeeeeCCC
Q 028257 111 --ADVI--MTSE----SCRNGTERCNEALQKLEKK-YDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKP 180 (211)
Q Consensus 111 --v~vi--~~~~----~~~g~~~si~~al~~l~~~-~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v~~~~~~~ 180 (211)
+.+. +..+ ...|...++..+++.+... .+.++++.+|. +. ...+.++++.+.+ ..+.++.+...+..
T Consensus 81 ~~~~i~~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~lV~~gD~-l~-~~d~~~ll~~h~~~~~~~tl~~~~~~~~- 157 (380)
T PRK05293 81 GGVTILPPYSESEGGKWYKGTAHAIYQNIDYIDQYDPEYVLILSGDH-IY-KMDYDKMLDYHKEKEADVTIAVIEVPWE- 157 (380)
T ss_pred CCEEEeCCcccCCCCcccCCcHHHHHHHHHHHHhCCCCEEEEecCCE-EE-cCCHHHHHHHHHhcCCCEEEEEEEcchh-
Confidence 1221 1111 1245567888888887422 36899999998 43 4578888887754 34443332211111
Q ss_pred CCCCCCC-CeEEEeCCCccEEeeecCC
Q 028257 181 EDAFDPN-RVKCVVDNHGYAIYFSRGL 206 (211)
Q Consensus 181 ~~~~d~~-~~~~v~~~~~~~~~~~~~~ 206 (211)
++. .-.+..|.+|.+..|.+++
T Consensus 158 ----~~~~yG~v~~d~~g~V~~~~eKp 180 (380)
T PRK05293 158 ----EASRFGIMNTDENMRIVEFEEKP 180 (380)
T ss_pred ----hccccCEEEECCCCcEEEEEeCC
Confidence 111 2234467778888888775
No 74
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=99.46 E-value=7.8e-13 Score=108.21 Aligned_cols=112 Identities=16% Similarity=0.179 Sum_probs=84.6
Q ss_pred EEEecCCCCCCCC------CccccccCCe-ehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHH---cC-------Ce
Q 028257 52 GIIPARFASSRFE------GKPLVNILGK-PMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ---FG-------AD 112 (211)
Q Consensus 52 aIIlA~G~ssRlg------~K~ll~l~Gk-pLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~---~~-------v~ 112 (211)
+||||||.|+||. +|+|+|++|+ |||+|+++.+.++ ++++++|+++. +++.+++.+ ++ +.
T Consensus 1 avILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~-gi~~iivv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 79 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNS-GIRNVGVLTQYKSRSLNDHLGSGKEWDLDRKNGGLF 79 (200)
T ss_pred CEEeCCCCCcccchhhcCCcceeeEECCeeeeHHHHHHHHHHC-CCCEEEEEeCCChHHHHHHHhCCCcccCCCCCCCEE
Confidence 5899999999993 5999999998 9999999999987 69999999974 556665542 12 22
Q ss_pred Eee-----CCcccCCChHHHHHHHHhhcc-CCCEEEEEcCCCcCCCHHHHHHHHHHHHhC
Q 028257 113 VIM-----TSESCRNGTERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAA 166 (211)
Q Consensus 113 vi~-----~~~~~~g~~~si~~al~~l~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~~ 166 (211)
++. +++...|...++..|.+.+.. +.+.++++.+|+ +....+.++++.+.++
T Consensus 80 ~~~~~~~~~~~~~~Gta~al~~a~~~i~~~~~~~~lv~~gD~--v~~~~~~~~l~~~~~~ 137 (200)
T cd02508 80 ILPPQQRKGGDWYRGTADAIYQNLDYIERSDPEYVLILSGDH--IYNMDYREMLDFHIES 137 (200)
T ss_pred EeCcccCCCCCcccCcHHHHHHHHHHHHhCCCCEEEEecCCE--EEecCHHHHHHHHHHc
Confidence 332 122335667788888888742 257899999999 4556899999887543
No 75
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.45 E-value=3.1e-12 Score=116.42 Aligned_cols=154 Identities=16% Similarity=0.173 Sum_probs=105.1
Q ss_pred CCCcEEEEEecCCCCCCCC------CccccccCCee-hHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHH-cC-----
Q 028257 46 FRSRVVGIIPARFASSRFE------GKPLVNILGKP-MIQRTWERSKLATTLDHLVVATD--DEKIAECCQQ-FG----- 110 (211)
Q Consensus 46 ~~m~i~aIIlA~G~ssRlg------~K~ll~l~Gkp-Ll~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~-~~----- 110 (211)
.+++..|||||||.|+||. +|+|+|++|+| ||+|+++.+.++ ++++|+|+++ .+.+.+++.+ ++
T Consensus 12 ~~~~~~aVILAaG~GtRl~pLT~~~PK~llpv~gkp~lI~~~l~~l~~~-Gi~~i~vv~~~~~~~i~~~~~~~~~~~~~~ 90 (425)
T PRK00725 12 LTRDTLALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINS-GIRRIGVLTQYKAHSLIRHIQRGWSFFREE 90 (425)
T ss_pred hhcceEEEEECCCCCCcchhhhCCCcceeEEECCEEEEhHHHHHHHHHC-CCCeEEEEecCCHHHHHHHHHhhhcccccC
Confidence 4467889999999999994 59999999997 999999999997 6999999996 3556665543 21
Q ss_pred -Ce-Ee-eC-------CcccCCChHHHHHHHHhhccC-CCEEEEEcCCCcCCCHHHHHHHHHHHHhC-CCeEEEEeeeeC
Q 028257 111 -AD-VI-MT-------SESCRNGTERCNEALQKLEKK-YDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSL 178 (211)
Q Consensus 111 -v~-vi-~~-------~~~~~g~~~si~~al~~l~~~-~d~vlv~~~D~Pli~~~~i~~li~~~~~~-~d~vv~v~~~~~ 178 (211)
.. +. .. .+...|...++..++..+... .+.++++.+|+ + ....+.++++.+.++ .+.++.+. ++
T Consensus 91 ~~~~i~i~~~~~~~~~e~~~lGTa~al~~a~~~l~~~~~d~~lVl~gD~-l-~~~dl~~ll~~h~~~~~~~tl~~~--~~ 166 (425)
T PRK00725 91 LGEFVDLLPAQQRVDEENWYRGTADAVYQNLDIIRRYDPKYVVILAGDH-I-YKMDYSRMLADHVESGADCTVACL--EV 166 (425)
T ss_pred CCCeEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCe-E-eccCHHHHHHHHHHcCCCEEEEEE--ec
Confidence 11 11 10 111245567788888887522 47899999998 3 455789999887543 44444433 22
Q ss_pred CCCCCCCC-CCeEEEeCCCccEEeeecCCC
Q 028257 179 KPEDAFDP-NRVKCVVDNHGYAIYFSRGLI 207 (211)
Q Consensus 179 ~~~~~~d~-~~~~~v~~~~~~~~~~~~~~~ 207 (211)
... ++ ..-.+..|+++.+..|.+++.
T Consensus 167 ~~~---~~~~yG~v~~d~~~~V~~~~EKp~ 193 (425)
T PRK00725 167 PRE---EASAFGVMAVDENDRITAFVEKPA 193 (425)
T ss_pred chh---hcccceEEEECCCCCEEEEEECCC
Confidence 110 11 234455677788888887653
No 76
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.45 E-value=2.1e-12 Score=117.67 Aligned_cols=153 Identities=19% Similarity=0.228 Sum_probs=104.5
Q ss_pred CCcEEEEEecCCCCCCCC------CccccccCCe-ehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHH-c-------
Q 028257 47 RSRVVGIIPARFASSRFE------GKPLVNILGK-PMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQ-F------- 109 (211)
Q Consensus 47 ~m~i~aIIlA~G~ssRlg------~K~ll~l~Gk-pLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~-~------- 109 (211)
|.++.|||||||.|+||. +|+|+|++|+ |||+|+++.+.++ ++++|+|+++ .+.+.+++.+ +
T Consensus 1 m~~~~AVILAaG~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~~-Gi~~vivv~~~~~~~i~~~l~~~~~~~~~~~ 79 (429)
T PRK02862 1 MKRVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINS-GINKIYVLTQFNSASLNRHISQTYNFDGFSG 79 (429)
T ss_pred CCcEEEEEECCCCCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHHC-CCCEEEEEecCCHHHHHHHHhcCcCccccCC
Confidence 457889999999999994 5999999999 9999999999997 6999999997 4566666542 1
Q ss_pred C-CeEeeCCc------ccCCChHHHHHHHHhhcc-CCCEEEEEcCCCcCCCHHHHHHHHHHHHhC-CCeEEEEeeeeCCC
Q 028257 110 G-ADVIMTSE------SCRNGTERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKP 180 (211)
Q Consensus 110 ~-v~vi~~~~------~~~g~~~si~~al~~l~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~~-~d~vv~v~~~~~~~ 180 (211)
+ +.+....+ ...|...++..+++.+.. ..+.++++.+|+ +++ ..+..+++.+.+. ++.++.+...+ .
T Consensus 80 g~~~i~~~~~~~~~~~~~lGTa~al~~a~~~l~~~~~~~~lVl~gD~-l~~-~dl~~ll~~h~~~~a~~tl~~~~~~--~ 155 (429)
T PRK02862 80 GFVEVLAAQQTPENPSWFQGTADAVRKYLWHFQEWDVDEYLILSGDQ-LYR-MDYRLFVQHHRETGADITLAVLPVD--E 155 (429)
T ss_pred CEEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCE-EEe-CCHHHHHHHHHHcCCCEEEEEEecC--h
Confidence 1 11111111 114666788888887742 246899999999 554 5788888877543 34433332221 1
Q ss_pred CCCCCC-CCeEEEeCCCccEEeeecCCC
Q 028257 181 EDAFDP-NRVKCVVDNHGYAIYFSRGLI 207 (211)
Q Consensus 181 ~~~~d~-~~~~~v~~~~~~~~~~~~~~~ 207 (211)
-++ ..-.+..|++|.+..|.+++.
T Consensus 156 ---~~~~~yG~i~~d~~g~V~~~~Ekp~ 180 (429)
T PRK02862 156 ---KDASGFGLMKTDDDGRITEFSEKPK 180 (429)
T ss_pred ---hhcccceEEEECCCCcEEEEEECCC
Confidence 112 233455677888888887764
No 77
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=99.44 E-value=2.9e-12 Score=113.47 Aligned_cols=143 Identities=22% Similarity=0.258 Sum_probs=98.5
Q ss_pred EEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc---HHHHHHHHH---cCCeE-eeCCc
Q 028257 52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD---EKIAECCQQ---FGADV-IMTSE 118 (211)
Q Consensus 52 aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~---e~i~~~~~~---~~v~v-i~~~~ 118 (211)
+||||||.|+||. +|+|++++|+|||+|+++.+.++ ++++++|+++. +.+.+++.. ++.++ +..++
T Consensus 2 aiIlAaG~gtRl~plt~~~pK~l~pv~g~pli~~~l~~l~~~-gi~~i~vv~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 80 (353)
T TIGR01208 2 ALILAAGKGTRLRPLTFTRPKQLIPVANKPILQYAIEDLAEA-GITDIGIVVGPVTGEEIKEIVGEGERFGAKITYIVQG 80 (353)
T ss_pred EEEECCcCcCccCccccCCCccccEECCEeHHHHHHHHHHHC-CCCEEEEEeCCCCHHHHHHHHhcccccCceEEEEECC
Confidence 7999999999994 59999999999999999999998 69999988865 456665542 34444 22223
Q ss_pred ccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEEeeeeCCCCCCCCCCC-eEEEeCCC
Q 028257 119 SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKPEDAFDPNR-VKCVVDNH 196 (211)
Q Consensus 119 ~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v~~~~~~~~~~~d~~~-~~~v~~~~ 196 (211)
...|...++..+++.+. .+.++++.+|+++ + ..+..+++.+.+ ..+.++.+ .++. ++.. -.+..+.+
T Consensus 81 ~~~G~~~al~~a~~~l~--~~~~li~~gD~~~-~-~~l~~l~~~~~~~~~d~ti~~--~~~~-----~~~~~g~~~~~~~ 149 (353)
T TIGR01208 81 EPLGLAHAVYTARDFLG--DDDFVVYLGDNLI-Q-DGISRFVKSFEEKDYDALILL--TKVR-----DPTAFGVAVLEDG 149 (353)
T ss_pred CCCCHHHHHHHHHHhcC--CCCEEEEECCeec-C-ccHHHHHHHHHhcCCCcEEEE--EECC-----ChhhCeEEEEcCC
Confidence 34566678889998874 4568899999976 3 578888888753 34444333 3322 2211 12333555
Q ss_pred ccEEeeecCC
Q 028257 197 GYAIYFSRGL 206 (211)
Q Consensus 197 ~~~~~~~~~~ 206 (211)
+.+..|..++
T Consensus 150 ~~v~~~~ekp 159 (353)
T TIGR01208 150 KRILKLVEKP 159 (353)
T ss_pred CcEEEEEECC
Confidence 6677776654
No 78
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=99.43 E-value=8.1e-12 Score=105.94 Aligned_cols=150 Identities=15% Similarity=0.142 Sum_probs=99.1
Q ss_pred EEEecCC--CCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHH----cCCeEeeCC
Q 028257 52 GIIPARF--ASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQ----FGADVIMTS 117 (211)
Q Consensus 52 aIIlA~G--~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~----~~v~vi~~~ 117 (211)
+|||||| .|+||. +|+|+|++|+|||+|+++.+....++++|+|+++ .+.+.+++.. .+..+.+..
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv~g~plI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~i~~~~ 80 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQQEFNVPIRYLQ 80 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeECCeeHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHhcccccCceEEEec
Confidence 5899999 899994 6999999999999999999998336999999886 3455555432 344543322
Q ss_pred -cccCCChHHHHHHHHhhcc-CCCEEEEEcCCCcCCCHHHHHHHHHHHHhC-CCeEEEEeeeeCCCCCCCCCCCeEEEeC
Q 028257 118 -ESCRNGTERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDAFDPNRVKCVVD 194 (211)
Q Consensus 118 -~~~~g~~~si~~al~~l~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~~-~d~vv~v~~~~~~~~~~~d~~~~~~v~~ 194 (211)
....|...++..+.+.+.. ..+.++++.||.++ + ..++.+++.+.+. .+.++.+ +++..+.. ...-.+..|
T Consensus 81 ~~~~~Gt~~al~~a~~~l~~~~~~~~lv~~gD~~~-~-~dl~~~~~~h~~~~~~~tl~~--~~~~~~~~--~~yg~v~~d 154 (257)
T cd06428 81 EYKPLGTAGGLYHFRDQILAGNPSAFFVLNADVCC-D-FPLQELLEFHKKHGASGTILG--TEASREQA--SNYGCIVED 154 (257)
T ss_pred CCccCCcHHHHHHHHHHhhccCCCCEEEEcCCeec-C-CCHHHHHHHHHHcCCCEEEEE--EEcccccc--ccccEEEEe
Confidence 2234556677777777642 24679999999963 3 3688999887543 3443332 23211111 112234456
Q ss_pred -CCccEEeeecCCC
Q 028257 195 -NHGYAIYFSRGLI 207 (211)
Q Consensus 195 -~~~~~~~~~~~~~ 207 (211)
.+|.+..|.+++.
T Consensus 155 ~~~g~v~~~~Ekp~ 168 (257)
T cd06428 155 PSTGEVLHYVEKPE 168 (257)
T ss_pred CCCCeEEEEEeCCC
Confidence 5778888887653
No 79
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=99.42 E-value=2.6e-12 Score=113.95 Aligned_cols=147 Identities=15% Similarity=0.195 Sum_probs=98.4
Q ss_pred EEEecCCCCCCCC------CccccccCCe-ehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHH-cC--------CeE
Q 028257 52 GIIPARFASSRFE------GKPLVNILGK-PMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQ-FG--------ADV 113 (211)
Q Consensus 52 aIIlA~G~ssRlg------~K~ll~l~Gk-pLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~-~~--------v~v 113 (211)
|||||||.|+||. +|+|+|++|+ |||+|+++.+.++ ++++|+|+++ .+++.+++.+ ++ +++
T Consensus 1 aiILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~-gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 79 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINS-GIRRIGVLTQYKSHSLNRHIQRGWDFDGFIDGFVTL 79 (361)
T ss_pred CEEeCCCCCCccchhhhCCccccceecceeeEeeehhhhhhhc-CCceEEEEeccChHHHHHHHHhccCccCccCCCEEE
Confidence 5999999999995 5999999999 8999999999998 6999999986 3556665542 11 122
Q ss_pred ee------CCcccCCChHHHHHHHHhhcc-CCCEEEEEcCCCcCCCHHHHHHHHHHHHhC-CCeEEEEeeeeCCCCCCCC
Q 028257 114 IM------TSESCRNGTERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDAFD 185 (211)
Q Consensus 114 i~------~~~~~~g~~~si~~al~~l~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~~-~d~vv~v~~~~~~~~~~~d 185 (211)
+. .++...|...++..++..+.. ..+.++++.+|+ +. ...+..+++.+.+. .+..+.+. +... -+
T Consensus 80 ~~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~~~~lv~~gD~-l~-~~~l~~~l~~~~~~~~~~ti~~~--~~~~---~~ 152 (361)
T TIGR02091 80 LPAQQRESGTDWYQGTADAVYQNLDLIEDYDPEYVLILSGDH-IY-KMDYEKMLDYHIESGADVTIACI--PVPR---KE 152 (361)
T ss_pred eCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCE-EE-cCCHHHHHHHHHHcCCCEEEEEE--ecCh---Hh
Confidence 11 111124556788888887742 247899999998 44 44688888877543 34444332 2110 01
Q ss_pred CC-CeEEEeCCCccEEeeecCC
Q 028257 186 PN-RVKCVVDNHGYAIYFSRGL 206 (211)
Q Consensus 186 ~~-~~~~v~~~~~~~~~~~~~~ 206 (211)
.. .-.+..|.++++..|.+++
T Consensus 153 ~~~~g~v~~d~~~~v~~~~ekp 174 (361)
T TIGR02091 153 ASRFGVMQVDEDGRIVDFEEKP 174 (361)
T ss_pred cccccEEEECCCCCEEEEEECC
Confidence 12 2245567777888887664
No 80
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=99.41 E-value=9.4e-12 Score=105.80 Aligned_cols=141 Identities=15% Similarity=0.190 Sum_probs=94.4
Q ss_pred EEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHHc-----CCeEeeC--
Q 028257 52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQF-----GADVIMT-- 116 (211)
Q Consensus 52 aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~~-----~v~vi~~-- 116 (211)
+||||||.|+||. +|+|++++|+|||+|+++.+.++ ++++|+|+++ .+.+.+++.+. +.++...
T Consensus 2 avilaaG~gtRl~~~t~~~pK~llpv~g~pii~~~l~~l~~~-gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 80 (254)
T TIGR02623 2 AVILAGGLGTRISEETHLRPKPMVEIGGKPILWHIMKIYSHH-GINDFIICCGYKGYVIKEYFANYFLHMSDVTFHMADN 80 (254)
T ss_pred EEEEcCccccccCccccCCCcceeEECCEEHHHHHHHHHHHC-CCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEeccc
Confidence 7999999999993 59999999999999999999987 6999999986 35555555432 2222110
Q ss_pred -----------------Cc-ccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEEeeee
Q 028257 117 -----------------SE-SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTS 177 (211)
Q Consensus 117 -----------------~~-~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v~~~~ 177 (211)
.+ ...|...++..+.+.+. .+.++++.+|. +....+.++++.+.+ +.+.++. ...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~gt~~al~~~~~~i~--~e~flv~~gD~--i~~~dl~~~~~~h~~~~~d~tl~--~~~ 154 (254)
T TIGR02623 81 TMEVHHKRVEPWRVTLVDTGESTQTGGRLKRVREYLD--DEAFCFTYGDG--VADIDIKALIAFHRKHGKKATVT--AVQ 154 (254)
T ss_pred ccccccccCCccceeeeecCCcCCcHHHHHHHHHhcC--CCeEEEEeCCe--EecCCHHHHHHHHHHcCCCEEEE--Eec
Confidence 01 11234457888888873 56899999998 345678888887754 3444332 111
Q ss_pred CCCCCCCCCC-CeEEEeCCCccEEeeecCCC
Q 028257 178 LKPEDAFDPN-RVKCVVDNHGYAIYFSRGLI 207 (211)
Q Consensus 178 ~~~~~~~d~~-~~~~v~~~~~~~~~~~~~~~ 207 (211)
++. .-.+..| ++.+..|.+++.
T Consensus 155 -------~~~~yG~v~~d-~~~V~~~~Ekp~ 177 (254)
T TIGR02623 155 -------PPGRFGALDLE-GEQVTSFQEKPL 177 (254)
T ss_pred -------CCCcccEEEEC-CCeEEEEEeCCC
Confidence 111 2233445 357778887653
No 81
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=99.41 E-value=1.1e-11 Score=104.93 Aligned_cols=145 Identities=15% Similarity=0.170 Sum_probs=97.6
Q ss_pred EEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHHc---C--CeEe----
Q 028257 52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQF---G--ADVI---- 114 (211)
Q Consensus 52 aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~~---~--v~vi---- 114 (211)
|||||||.|+||. +|+|++++|+|||+|+++.+..+ ++++|+|+++ .+.+.++..+. + +++.
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv~~~p~i~~~~~~~~~~-gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 79 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEIGGRPILWHIMKIYSHY-GHNDFILCLGYKGHVIKEYFLNYFLHNSDVTIDLGTN 79 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEECCEEHHHHHHHHHHhC-CCceEEEECCCCHHHHHHHHHhhhhhcCceeEeeccc
Confidence 5899999999994 59999999999999999999987 6999999986 46677766542 1 2221
Q ss_pred ----eCCcc------------cCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEEeeee
Q 028257 115 ----MTSES------------CRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTS 177 (211)
Q Consensus 115 ----~~~~~------------~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v~~~~ 177 (211)
.++.. ..+...++..+++.+.. .+.++++.+|. +.+. .+..+++.+.. +.+.++.. ..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~~~~~-~~~~lv~~gD~-i~~~-dl~~ll~~h~~~~~~~tl~~--~~ 154 (253)
T cd02524 80 RIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLGD-DETFMLTYGDG-VSDV-NINALIEFHRSHGKLATVTA--VH 154 (253)
T ss_pred ceeeecccccccceeecccCcccccHHHHHHHHHhcCC-CCeEEEEcCCE-EECC-CHHHHHHHHHHcCCCEEEEE--ec
Confidence 11100 12234567888888741 27899999998 4454 55888887654 33333322 11
Q ss_pred CCCCCCCCCCCeEEEeCCCccEEeeecCCCC
Q 028257 178 LKPEDAFDPNRVKCVVDNHGYAIYFSRGLIP 208 (211)
Q Consensus 178 ~~~~~~~d~~~~~~v~~~~~~~~~~~~~~~~ 208 (211)
+ ....-.+..|.+|++..|.+++.+
T Consensus 155 --~----~~~~g~v~~d~~g~V~~~~ekp~~ 179 (253)
T cd02524 155 --P----PGRFGELDLDDDGQVTSFTEKPQG 179 (253)
T ss_pred --C----CCcccEEEECCCCCEEEEEECCCC
Confidence 1 111223566788888888887653
No 82
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.39 E-value=6.5e-12 Score=108.99 Aligned_cols=152 Identities=21% Similarity=0.211 Sum_probs=104.5
Q ss_pred CcEEEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cH-HHHHHH----HHcCCeEe
Q 028257 48 SRVVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DE-KIAECC----QQFGADVI 114 (211)
Q Consensus 48 m~i~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e-~i~~~~----~~~~v~vi 114 (211)
..+.||||.||.|+|+- +|++.+++++|||.|.++++.++ ++++|++.++ ++ ...... .++|++++
T Consensus 8 ~~vkaiILvGG~GTRLrPLT~t~pKPlVpfgn~pmI~hqieal~ns-Gi~~I~la~~y~s~sl~~~~~k~y~~~lgVei~ 86 (371)
T KOG1322|consen 8 QSVKAIILVGGYGTRLRPLTLTRPKPLVPFGNKPMILHQIEALINS-GITKIVLATQYNSESLNRHLSKAYGKELGVEIL 86 (371)
T ss_pred cceeEEEEecCCCceeeceeccCCCcccccCcchhhHHHHHHHHhC-CCcEEEEEEecCcHHHHHHHHHHhhhccceEEE
Confidence 45779999999999983 59999999999999999999998 6999999996 34 223333 34577764
Q ss_pred eCCc----ccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeeeCCCCCCCCCCCeE
Q 028257 115 MTSE----SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVK 190 (211)
Q Consensus 115 ~~~~----~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~~~~~~~~d~~~~~ 190 (211)
.--+ ..+|+++..+..|... +...|||+.+|. +-.-.+.++++.+.++ ++-.++.++++++ ..+.--
T Consensus 87 ~s~eteplgtaGpl~laR~~L~~~--~~~~ffVLnsDv--i~~~p~~~~vqfH~~~-gae~TI~~t~vde----pSkyGv 157 (371)
T KOG1322|consen 87 ASTETEPLGTAGPLALARDFLWVF--EDAPFFVLNSDV--ICRMPYKEMVQFHRAH-GAEITIVVTKVDE----PSKYGV 157 (371)
T ss_pred EEeccCCCcccchHHHHHHHhhhc--CCCcEEEecCCe--eecCCHHHHHHHHHhc-CCceEEEEEeccC----ccccce
Confidence 4222 2344443333333322 223799999998 3344588899988653 3334444556544 334555
Q ss_pred EEeCC-CccEEeeecCCCCC
Q 028257 191 CVVDN-HGYAIYFSRGLIPY 209 (211)
Q Consensus 191 ~v~~~-~~~~~~~~~~~~~~ 209 (211)
++.|+ .|++..|++++-+|
T Consensus 158 v~~d~~~grV~~F~EKPkd~ 177 (371)
T KOG1322|consen 158 VVIDEDTGRVIRFVEKPKDL 177 (371)
T ss_pred EEEecCCCceeEehhCchhh
Confidence 66777 89999999987654
No 83
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.37 E-value=2.5e-11 Score=111.88 Aligned_cols=151 Identities=17% Similarity=0.199 Sum_probs=97.1
Q ss_pred EEEEEecCCCCCCCC-------CccccccCC-eehHHHHHHHHHcCCCCCeEEEEcCcHH---HHHHHHHcCC---eEee
Q 028257 50 VVGIIPARFASSRFE-------GKPLVNILG-KPMIQRTWERSKLATTLDHLVVATDDEK---IAECCQQFGA---DVIM 115 (211)
Q Consensus 50 i~aIIlA~G~ssRlg-------~K~ll~l~G-kpLl~~~i~~l~~~~~id~IVVvt~~e~---i~~~~~~~~v---~vi~ 115 (211)
+.+||||||.|+||. +|+|+++.| +|||+|+++++... .+++++|+++.+. +.+....++. .++.
T Consensus 1 ~~~vILAgG~GtRl~PlS~~~~PK~~l~l~g~~~ll~~tl~~l~~~-~~~~iviv~~~~~~~~~~~~l~~~~~~~~~~i~ 79 (468)
T TIGR01479 1 IIPVILAGGSGTRLWPLSRELYPKQFLALVGDLTMLQQTLKRLAGL-PCSSPLVICNEEHRFIVAEQLREIGKLASNIIL 79 (468)
T ss_pred CEEEEecCcccccCCccccCCCCCceeEcCCCCcHHHHHHHHHhcC-CCcCcEEecCHHHHHHHHHHHHHcCCCcceEEe
Confidence 358999999999994 599999966 89999999999987 5889999887543 3445555543 2344
Q ss_pred CCcccCCChHHHHHHHHhhc---cCCCEEEEEcCCCcCCCHHHHHHHHHHHH--hCCCeEEEEeeeeCCCCCCCCCCCeE
Q 028257 116 TSESCRNGTERCNEALQKLE---KKYDIVVNIQGDEPLIEPEIIDGVVKALQ--AAPDAVFSTAVTSLKPEDAFDPNRVK 190 (211)
Q Consensus 116 ~~~~~~g~~~si~~al~~l~---~~~d~vlv~~~D~Pli~~~~i~~li~~~~--~~~d~vv~v~~~~~~~~~~~d~~~~~ 190 (211)
.+ ...|+..++..+...+. ...+.++++++|+++.+.+.+.++++.+. ...+.++.+..++..+++ ..-+
T Consensus 80 Ep-~~~gTa~ai~~aa~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvtlgi~p~~p~t----~YGy 154 (468)
T TIGR01479 80 EP-VGRNTAPAIALAALLAARRNGEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVTFGIVPTHPET----GYGY 154 (468)
T ss_pred cc-cccCchHHHHHHHHHHHHHHCCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEEEEecCCCCCC----CceE
Confidence 33 33454444444444442 12457999999999888888888887642 112445555544322211 2233
Q ss_pred EEeCC------CccEEeeecCC
Q 028257 191 CVVDN------HGYAIYFSRGL 206 (211)
Q Consensus 191 ~v~~~------~~~~~~~~~~~ 206 (211)
...++ .+.+..|.+++
T Consensus 155 I~~~~~~~~~~~~~V~~f~EKP 176 (468)
T TIGR01479 155 IRRGEPLAGEDVYQVQRFVEKP 176 (468)
T ss_pred EEeCCccCCCCceEEeEEEECC
Confidence 33342 24577777765
No 84
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=99.36 E-value=7.1e-12 Score=111.63 Aligned_cols=150 Identities=12% Similarity=0.130 Sum_probs=96.6
Q ss_pred cEEEEEecCCCCCCCC------CccccccCCe-ehHHHHHHHHHcCCCCCeEEEEcCc--H-HHHHHHHH---cCCe---
Q 028257 49 RVVGIIPARFASSRFE------GKPLVNILGK-PMIQRTWERSKLATTLDHLVVATDD--E-KIAECCQQ---FGAD--- 112 (211)
Q Consensus 49 ~i~aIIlA~G~ssRlg------~K~ll~l~Gk-pLl~~~i~~l~~~~~id~IVVvt~~--e-~i~~~~~~---~~v~--- 112 (211)
...+||||+|.|+||. +|+|+|++|+ |||+|+++.|.++ ++++|+|+++. + .+++++.+ ++.+
T Consensus 2 ~~~avila~g~gtRL~PLT~~~PKpLlpV~gk~PlIe~~l~~L~~~-Gi~~I~iv~~~~~~~~I~~~l~~~~~~~~~~~~ 80 (369)
T TIGR02092 2 KMSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNA-GIRNVFIFFKNKERQSLFDHLGSGREWDLHRKR 80 (369)
T ss_pred cEEEEEECCCCCccccccccCCcccccccCCeeeEEEEEhhhhhcc-CCCEEEEEeCCCcHHHHHHHHhCCCCCCccccc
Confidence 4569999999999994 5999999999 9999999999997 69999999974 4 77777742 3333
Q ss_pred ----E-eeCCccc--CCChHHHHHHHHhhcc-CCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEEeeeeCCCCCC
Q 028257 113 ----V-IMTSESC--RNGTERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKPEDA 183 (211)
Q Consensus 113 ----v-i~~~~~~--~g~~~si~~al~~l~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v~~~~~~~~~~ 183 (211)
+ +..++.. .|+..++..+.+.+.. ..+.++++.+|. +....+.++++.+.+ ..+.++.+ +++.++ .
T Consensus 81 ~~~~~~~~~e~~~l~tg~~~a~~~a~~~l~~~~~~~~lvlnGD~--l~~~dl~~ll~~h~~~~a~~tl~~--~~v~~~-~ 155 (369)
T TIGR02092 81 DGLFVFPYNDRDDLSEGGKRYFSQNLEFLKRSTSEYTVVLNSHM--VCNIDLKAVLKYHEETGKDITVVY--KKVKPA-D 155 (369)
T ss_pred CcEEEEeccCCCCcccChHHHHHHHHHHHHhCCCCEEEEECCCE--EEecCHHHHHHHHHHcCCCEEEEE--EecCHH-H
Confidence 1 2222221 1333456667776631 247899999998 445678888887754 34443333 332110 0
Q ss_pred CCCCCeEEEeCCCccEEeeec
Q 028257 184 FDPNRVKCVVDNHGYAIYFSR 204 (211)
Q Consensus 184 ~d~~~~~~v~~~~~~~~~~~~ 204 (211)
..+....+..+.+|.+.+|.+
T Consensus 156 ~~~~g~vv~~~~~g~v~~~~~ 176 (369)
T TIGR02092 156 ASEYDTILRFDESGKVKSIGQ 176 (369)
T ss_pred ccccCcEEEEcCCCCEEeccc
Confidence 111223344555566656543
No 85
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=99.36 E-value=1.4e-11 Score=112.41 Aligned_cols=155 Identities=19% Similarity=0.214 Sum_probs=101.9
Q ss_pred CCcEEEEEecCCCCCCCC------CccccccCCe-ehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHH-c--C----
Q 028257 47 RSRVVGIIPARFASSRFE------GKPLVNILGK-PMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ-F--G---- 110 (211)
Q Consensus 47 ~m~i~aIIlA~G~ssRlg------~K~ll~l~Gk-pLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~-~--~---- 110 (211)
|+++.|||||||.|+||. +|+|+|++|+ |||+|+++.+.++ ++++++|+++. +.+.+++.. + +
T Consensus 1 ~~~~~aIIlA~G~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~~-Gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~~ 79 (436)
T PLN02241 1 PKSVAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINS-GINKIYVLTQFNSASLNRHLSRAYNFGNGGN 79 (436)
T ss_pred CCceEEEEEeCCCCCcchhhhcCCcccceEeCCcceEehHHHHHHHhC-CCCEEEEEeccCHHHHHHHHhccCCCCCCcc
Confidence 457889999999999994 5999999996 9999999999987 69999999863 566666543 1 1
Q ss_pred -----CeEeeCCc------ccCCChHHHHHHHHhhccC----CCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEee
Q 028257 111 -----ADVIMTSE------SCRNGTERCNEALQKLEKK----YDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAV 175 (211)
Q Consensus 111 -----v~vi~~~~------~~~g~~~si~~al~~l~~~----~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~ 175 (211)
+.+....+ ...|...++..++..+... .+.++++.+|+ +. ...+.++++.+.+. ++.+++..
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~-v~-~~dl~~ll~~h~~~-~a~~ti~~ 156 (436)
T PLN02241 80 FGDGFVEVLAATQTPGEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDH-LY-RMDYMDFVQKHRES-GADITIAC 156 (436)
T ss_pred cCCCCEEEcCCcccCCCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCe-EE-ccCHHHHHHHHHHc-CCCEEEEE
Confidence 11111101 1234446666666554321 47899999998 44 45788888887543 23233333
Q ss_pred eeCCCCCCCCCCCeEEEeCCCccEEeeecCCC
Q 028257 176 TSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLI 207 (211)
Q Consensus 176 ~~~~~~~~~d~~~~~~v~~~~~~~~~~~~~~~ 207 (211)
.++..+.. .+.-.+..|.++.+..|.+++.
T Consensus 157 ~~v~~~~~--~~ygvv~~d~~~~v~~~~Ekp~ 186 (436)
T PLN02241 157 LPVDESRA--SDFGLMKIDDTGRIIEFSEKPK 186 (436)
T ss_pred Eecchhhc--CcceEEEECCCCCEEEEEECCC
Confidence 33322111 1223345588889999998753
No 86
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=99.34 E-value=5.5e-11 Score=103.86 Aligned_cols=113 Identities=15% Similarity=0.203 Sum_probs=81.0
Q ss_pred EEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHH---c----------
Q 028257 51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ---F---------- 109 (211)
Q Consensus 51 ~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~---~---------- 109 (211)
.+||+|||.|+||. +|+++|++|+|+|+|+++.+..+ ++++|+|+++. +.+.+++.. +
T Consensus 10 ~aiIlaaG~g~Rl~~~t~~~pK~l~pv~g~pii~~~l~~l~~~-gi~~i~vv~~~~~~~i~~~~~~~~~~~~~l~~~~~~ 88 (302)
T PRK13389 10 KAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAA-GITEIVLVTHSSKNSIENHFDTSFELEAMLEKRVKR 88 (302)
T ss_pred EEEEECCcCCccCCCccCCCCceeeEECCEEHHHHHHHHHHHC-CCCEEEEEeCCCHHHHHHHHccchhhhhhhhhhhhh
Confidence 38999999999993 59999999999999999999998 69999999863 445555431 0
Q ss_pred ------------CCeEeeCC-cccCCChHHHHHHHHhhccCCCEEEEEcCCCcC------CCHHHHHHHHHHHHhC
Q 028257 110 ------------GADVIMTS-ESCRNGTERCNEALQKLEKKYDIVVNIQGDEPL------IEPEIIDGVVKALQAA 166 (211)
Q Consensus 110 ------------~v~vi~~~-~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pl------i~~~~i~~li~~~~~~ 166 (211)
+..+.+.. ....|...++..+.+.+. ++.++++.+|.++ +....+.++++.+.+.
T Consensus 89 ~~~~e~~~i~~~~~~i~~~~q~~~~Gtg~Av~~a~~~~~--~~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~~~ 162 (302)
T PRK13389 89 QLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVG--DEPVAVILPDVILDEYESDLSQDNLAEMIRRFDET 162 (302)
T ss_pred HHHHhhhhccccCceEEEeecCCCCChHHHHHHHHHHcC--CCCEEEEeCcceecccccccccccHHHHHHHHHhc
Confidence 11111111 112344466777777763 4678999999975 3457888999887543
No 87
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.34 E-value=3.2e-11 Score=100.11 Aligned_cols=149 Identities=15% Similarity=0.120 Sum_probs=96.7
Q ss_pred EEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHH-c--------CCeE
Q 028257 51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ-F--------GADV 113 (211)
Q Consensus 51 ~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~-~--------~v~v 113 (211)
.+||+|||.|+||. +|+++|++|+|||+|+++.+.++ ++++|+|+++. +.+.+...+ . ++.+
T Consensus 2 ~avIlagg~g~rl~plt~~~pK~llpv~g~pli~~~l~~l~~~-gi~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (216)
T cd02507 2 QAVVLADGFGSRFLPLTSDIPKALLPVANVPLIDYTLEWLEKA-GVEEVFVVCCEHSQAIIEHLLKSKWSSLSSKMIVDV 80 (216)
T ss_pred eEEEEeCCCccccCccccCCCcccceECCEEHHHHHHHHHHHC-CCCeEEEEeCCcHHHHHHHHHhcccccccCCceEEE
Confidence 48999999999994 59999999999999999999987 59999888863 344444332 1 1223
Q ss_pred eeCCc-ccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHH---HHhCCCeEEEEeeeeCCCCC---CCCC
Q 028257 114 IMTSE-SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA---LQAAPDAVFSTAVTSLKPED---AFDP 186 (211)
Q Consensus 114 i~~~~-~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~---~~~~~d~vv~v~~~~~~~~~---~~d~ 186 (211)
..... ...|...++..+.+.+ .+.++++.||. +....+..++++ .....++.+++...+..... -...
T Consensus 81 ~~~~~~~~~Gta~~l~~~~~~i---~~dflv~~gD~--i~~~~l~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (216)
T cd02507 81 ITSDLCESAGDALRLRDIRGLI---RSDFLLLSCDL--VSNIPLSELLEERRKKDKNAIATLTVLLASPPVSTEQSKKTE 155 (216)
T ss_pred EEccCCCCCccHHHHHHHhhcC---CCCEEEEeCCE--eecCCHHHHHHHHHhhCcccceEEEEEeccCCCCccccccCC
Confidence 33222 3345566777777766 34689999996 555578888864 23344555554433321111 1233
Q ss_pred CCeEEEeCCC---ccEEeeecC
Q 028257 187 NRVKCVVDNH---GYAIYFSRG 205 (211)
Q Consensus 187 ~~~~~v~~~~---~~~~~~~~~ 205 (211)
+....+.|++ +..+++...
T Consensus 156 ~~~~i~~d~~~~~~~~~~~~~~ 177 (216)
T cd02507 156 EEDVIAVDSKTQRLLLLHYEED 177 (216)
T ss_pred CCcEEEEcCCCCceEEEechhh
Confidence 4566777777 455555544
No 88
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=99.33 E-value=4.4e-12 Score=102.69 Aligned_cols=101 Identities=22% Similarity=0.269 Sum_probs=80.8
Q ss_pred EEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHHcCCeEeeCCccc-C
Q 028257 51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQFGADVIMTSESC-R 121 (211)
Q Consensus 51 ~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~~~v~vi~~~~~~-~ 121 (211)
.|||+|||-||||- +|+|+.++|+|||++.|+.|++. ++++|+|+++ .|+++-+..+++++.+++++-. -
T Consensus 2 nAIIlAAG~gsR~~plT~~tpK~LlkV~g~plIErqI~~L~e~-gI~dI~IVvGYlkE~FeYLkdKy~vtLvyN~kY~~y 80 (231)
T COG4750 2 NAIILAAGLGSRFVPLTQSTPKSLLKVNGEPLIERQIEQLREA-GIDDITIVVGYLKEQFEYLKDKYDVTLVYNPKYREY 80 (231)
T ss_pred ceEEEecccccccccccccCChHHHHhcCcccHHHHHHHHHHC-CCceEEEEeeehHHHHHHHHHhcCeEEEeCchHHhh
Confidence 38999999999993 69999999999999999999998 6999999998 4666666678899998887532 2
Q ss_pred CChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHH
Q 028257 122 NGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIID 157 (211)
Q Consensus 122 g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~ 157 (211)
+...++..|.+.+. + .-++++|. +++...+.
T Consensus 81 Nn~ySlyla~d~l~--n--tYiidsDn-yl~kNif~ 111 (231)
T COG4750 81 NNIYSLYLARDFLN--N--TYIIDSDN-YLTKNIFL 111 (231)
T ss_pred hhHHHHHHHHHHhc--c--cEEeccch-Hhhhhhhh
Confidence 45678889998884 2 35789998 55554443
No 89
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.31 E-value=2.1e-11 Score=98.18 Aligned_cols=99 Identities=12% Similarity=0.130 Sum_probs=75.3
Q ss_pred CC-CccccccCC--eehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCCChHHHHHHHHhh-ccCC
Q 028257 63 FE-GKPLVNILG--KPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKL-EKKY 138 (211)
Q Consensus 63 lg-~K~ll~l~G--kpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g~~~si~~al~~l-~~~~ 138 (211)
|| +|++++++| +|||+|+++++.. .+++++|++++++ .+ ...++.++.+.....|++.++..|++.+ ..+.
T Consensus 1 mG~dK~ll~~~g~~~~ll~~~~~~l~~--~~~~iivv~~~~~--~~-~~~~~~~i~d~~~g~gpl~~~~~gl~~~~~~~~ 75 (178)
T PRK00576 1 MGRDKATLPLPGGTTTLVEHVVGIVGQ--RCAPVFVMAAPGQ--PL-PELPAPVLRDELRGLGPLPATGRGLRAAAEAGA 75 (178)
T ss_pred CCCCCEeeEeCCCCcCHHHHHHHHHhh--cCCEEEEECCCCc--cc-ccCCCCEeccCCCCCCcHHHHHHHHHHHHhcCC
Confidence 44 699999999 9999999998874 5899999986532 11 2335566554434457788888888764 2346
Q ss_pred CEEEEEcCCCcCCCHHHHHHHHHHHHhC
Q 028257 139 DIVVNIQGDEPLIEPEIIDGVVKALQAA 166 (211)
Q Consensus 139 d~vlv~~~D~Pli~~~~i~~li~~~~~~ 166 (211)
+++++++||||++++++++.+++.+.+.
T Consensus 76 ~~~lv~~~DmP~i~~~~i~~L~~~~~~~ 103 (178)
T PRK00576 76 RLAFVCAVDMPYLTVELIDDLARPAAQT 103 (178)
T ss_pred CEEEEEeCCCCCCCHHHHHHHHHHhhcC
Confidence 8999999999999999999999877543
No 90
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.27 E-value=1.8e-10 Score=99.94 Aligned_cols=134 Identities=16% Similarity=0.235 Sum_probs=91.7
Q ss_pred EEEEEecCCCCCCC-C------Ccccccc-CCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHH---HcCCe----Ee
Q 028257 50 VVGIIPARFASSRF-E------GKPLVNI-LGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQ---QFGAD----VI 114 (211)
Q Consensus 50 i~aIIlA~G~ssRl-g------~K~ll~l-~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~---~~~v~----vi 114 (211)
+..+|||||+|+|| | |||++.+ ++++|++.|++++......++++|+|+.++.....+ +.+.. ++
T Consensus 2 ~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e~~~~~~~~il 81 (333)
T COG0836 2 MIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPEIDIENAAGII 81 (333)
T ss_pred ceeEEEeCCCccccCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhhhhhccccceE
Confidence 46899999999999 4 6999999 559999999999998556789999999766443333 22222 44
Q ss_pred eCCcccCCChHHHHHHHHhhcc--CCCEEEEEcCCCcCCCHHHHHHHHHHHHh--CCCeEEEEeeeeCCCCCCC
Q 028257 115 MTSESCRNGTERCNEALQKLEK--KYDIVVNIQGDEPLIEPEIIDGVVKALQA--APDAVFSTAVTSLKPEDAF 184 (211)
Q Consensus 115 ~~~~~~~g~~~si~~al~~l~~--~~d~vlv~~~D~Pli~~~~i~~li~~~~~--~~d~vv~v~~~~~~~~~~~ 184 (211)
..| .-+++..+++.|...+.. .+..++++++|+-.-+.+.+.+.+++..+ ....+++...++-.|++.+
T Consensus 82 lEP-~gRnTApAIA~aa~~~~~~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~lVTfGI~Pt~PeTGY 154 (333)
T COG0836 82 LEP-EGRNTAPAIALAALSATAEGGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGIVTFGIPPTRPETGY 154 (333)
T ss_pred ecc-CCCCcHHHHHHHHHHHHHhCCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCEEEEecCCCCCccCc
Confidence 443 345566667655544432 23479999999977777778777766532 2236666665554444433
No 91
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.17 E-value=6.7e-10 Score=102.48 Aligned_cols=136 Identities=18% Similarity=0.264 Sum_probs=89.8
Q ss_pred CCcEEEEEecCCCCCCC-C------CccccccCC-eehHHHHHHHHHcCCCCCeEEEEcCcHH---HHHHHHHcC---Ce
Q 028257 47 RSRVVGIIPARFASSRF-E------GKPLVNILG-KPMIQRTWERSKLATTLDHLVVATDDEK---IAECCQQFG---AD 112 (211)
Q Consensus 47 ~m~i~aIIlA~G~ssRl-g------~K~ll~l~G-kpLl~~~i~~l~~~~~id~IVVvt~~e~---i~~~~~~~~---v~ 112 (211)
.|++.+||||||.|+|| | +|+|+++.| +|||+++++++... .+.+.+|+|+..+ +.+.+...+ ..
T Consensus 3 ~~~~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~-~~~~~iivt~~~~~~~v~~ql~~~~~~~~~ 81 (478)
T PRK15460 3 QSKLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGV-ECESPVVICNEQHRFIVAEQLRQLNKLTEN 81 (478)
T ss_pred CCceEEEEECCCCccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhC-CCCCcEEEeCHHHHHHHHHHHHhcCCcccc
Confidence 46678999999999999 3 599999954 79999999999876 4556667777543 333333333 24
Q ss_pred EeeCCcccCCChHHHHHHHHhhcc---C-CCEEEEEcCCCcCCCHHHHHHHHHHHH--hCCCeEEEEeeeeCCCCCCC
Q 028257 113 VIMTSESCRNGTERCNEALQKLEK---K-YDIVVNIQGDEPLIEPEIIDGVVKALQ--AAPDAVFSTAVTSLKPEDAF 184 (211)
Q Consensus 113 vi~~~~~~~g~~~si~~al~~l~~---~-~d~vlv~~~D~Pli~~~~i~~li~~~~--~~~d~vv~v~~~~~~~~~~~ 184 (211)
++..| .-+++...+..|...+.. + .+.++++++|+-.-+.+.+.+.++... ...+.++++..++-.|++.+
T Consensus 82 ii~EP-~~rnTApaialaa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lvt~GI~Pt~PeTgy 158 (478)
T PRK15460 82 IILEP-AGRNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVTFGIVPDLPETGY 158 (478)
T ss_pred EEecC-CCCChHHHHHHHHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEEEEecCCCCCCCCC
Confidence 45544 334555555544444421 1 358999999997777777877766552 12266777776664454443
No 92
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.1e-09 Score=94.21 Aligned_cols=157 Identities=18% Similarity=0.218 Sum_probs=104.8
Q ss_pred CcEEEEEecCC--CCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEc--CcHHHHHHH----HHcCCeE
Q 028257 48 SRVVGIIPARF--ASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVAT--DDEKIAECC----QQFGADV 113 (211)
Q Consensus 48 m~i~aIIlA~G--~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt--~~e~i~~~~----~~~~v~v 113 (211)
|+..|+|+.|| +|+||. +|+|.++.|.||++|-|+++++.+++.+|.++. +++.+..+. .++.+.+
T Consensus 1 ~~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpiaG~pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~~e~~~pv 80 (407)
T KOG1460|consen 1 MKVKAVILVGGPQKGTRFRPLSFNVPKPLFPIAGVPMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQQEFKVPV 80 (407)
T ss_pred CceEEEEEecCCCCCccccccccCCCCCccccCCcchhhhhHHHHhcccchhheeEEecccchHHHHHHHHHHhhcccch
Confidence 67889999999 699994 599999999999999999999999999999887 455555544 3455444
Q ss_pred -eeCCcccCCChHHHHHHHHhh-ccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeeeCCCCCCCCCCCeEE
Q 028257 114 -IMTSESCRNGTERCNEALQKL-EKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKC 191 (211)
Q Consensus 114 -i~~~~~~~g~~~si~~al~~l-~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~~~~~~~~d~~~~~~ 191 (211)
+.+.....|...++++.-+.+ ..+.+.++++.||.-.--| +++|+++++. ....+....++++++... +.--.
T Consensus 81 rYL~E~~plGtaGgLyhFrdqIl~g~ps~vFvlnaDVCcsfP--l~~ml~ahr~-~g~~~tll~tkvs~e~as--nfG~l 155 (407)
T KOG1460|consen 81 RYLREDNPLGTAGGLYHFRDQILAGSPSAVFVLNADVCCSFP--LQDMLEAHRR-YGGIGTLLVTKVSREQAS--NFGCL 155 (407)
T ss_pred hhhccCCCCCcccceeehhhHHhcCCCceEEEEecceecCCc--HHHHHHHHhh-cCCceEEEEEEecHhHhh--ccCee
Confidence 222212223333444433333 2356889999999744334 7888888864 355666666766543333 34556
Q ss_pred EeCCC-ccEEeeecCCCCC
Q 028257 192 VVDNH-GYAIYFSRGLIPY 209 (211)
Q Consensus 192 v~~~~-~~~~~~~~~~~~~ 209 (211)
|-||+ |+++++..++.-|
T Consensus 156 V~dP~t~evlHYveKPsTf 174 (407)
T KOG1460|consen 156 VEDPSTGEVLHYVEKPSTF 174 (407)
T ss_pred eecCCcCceEEeecCcchh
Confidence 66644 5577777766543
No 93
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=8.4e-11 Score=103.87 Aligned_cols=115 Identities=16% Similarity=0.179 Sum_probs=84.5
Q ss_pred CCCcEEEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHH---HH-HcCC----
Q 028257 46 FRSRVVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAEC---CQ-QFGA---- 111 (211)
Q Consensus 46 ~~m~i~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~---~~-~~~v---- 111 (211)
+|++..+||+|||.|+||| +|+|+|++++|||+|.++-|.++ +|++++|++..++...+ +. .+..
T Consensus 6 ~~~efqavV~a~~ggt~~p~~~~~~pKaLLPIgn~PMi~YpL~~L~~~-gfteiiVv~~e~e~~~i~~al~~~~~l~~~~ 84 (433)
T KOG1462|consen 6 PMSEFQAVVLAGGGGTRMPEVTSRLPKALLPIGNKPMILYPLNSLEQA-GFTEIIVVVNEDEKLDIESALGSNIDLKKRP 84 (433)
T ss_pred chHHhhhheeecCCceechhhhhhcchhhcccCCcceeeeehhHHHhc-CCeEEEEEecHHHHHHHHHHHhcCCcccccc
Confidence 4567789999999999997 69999999999999999999998 69999999986543333 21 1111
Q ss_pred -eEee--CCcccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh
Q 028257 112 -DVIM--TSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 165 (211)
Q Consensus 112 -~vi~--~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~ 165 (211)
.+.+ ......|..+++..-...+. .+.|+++.|| |++--.+..+++.|+.
T Consensus 85 ~~v~ip~~~~~d~gtadsLr~Iy~kik--S~DflvlsCD--~Vtdv~l~~lvd~FR~ 137 (433)
T KOG1462|consen 85 DYVEIPTDDNSDFGTADSLRYIYSKIK--SEDFLVLSCD--FVTDVPLQPLVDKFRA 137 (433)
T ss_pred cEEEeecccccccCCHHHHhhhhhhhc--cCCEEEEecc--cccCCCcHHHHHHHhc
Confidence 1111 11122355566665555553 4579999999 6888888999999974
No 94
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=99.08 E-value=1.3e-09 Score=88.59 Aligned_cols=94 Identities=20% Similarity=0.273 Sum_probs=75.5
Q ss_pred eehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCH
Q 028257 74 KPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEP 153 (211)
Q Consensus 74 kpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~ 153 (211)
+||++|+++.+.+. .+++++|+++++++..++..+++.++.++.. |..+++..|++.+..+.++++++.||+|++++
T Consensus 30 ~~ll~~~l~~l~~~-~~~~vvvv~~~~~~~~~~~~~~v~~i~~~~~--G~~~si~~al~~~~~~~~~vlv~~~D~P~l~~ 106 (195)
T TIGR03552 30 LAMLRDVITALRGA-GAGAVLVVSPDPALLEAARNLGAPVLRDPGP--GLNNALNAALAEAREPGGAVLILMADLPLLTP 106 (195)
T ss_pred HHHHHHHHHHHHhc-CCCCEEEECCCHHHHHHHHhcCCEEEecCCC--CHHHHHHHHHHHhhccCCeEEEEeCCCCCCCH
Confidence 79999999999987 3578999998877777766778887766433 66789999998875445799999999999999
Q ss_pred HHHHHHHHHHHhCCCeEE
Q 028257 154 EIIDGVVKALQAAPDAVF 171 (211)
Q Consensus 154 ~~i~~li~~~~~~~d~vv 171 (211)
++++++++.+.+ .+.++
T Consensus 107 ~~i~~l~~~~~~-~~~vi 123 (195)
T TIGR03552 107 RELKRLLAAATE-GDVVI 123 (195)
T ss_pred HHHHHHHHhccc-CCEEE
Confidence 999999998754 34443
No 95
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=99.07 E-value=3.7e-09 Score=90.17 Aligned_cols=125 Identities=14% Similarity=0.149 Sum_probs=89.3
Q ss_pred cEEEEEecCCCCCCC-C-----CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc------------HHHHHHHH---
Q 028257 49 RVVGIIPARFASSRF-E-----GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD------------EKIAECCQ--- 107 (211)
Q Consensus 49 ~i~aIIlA~G~ssRl-g-----~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~------------e~i~~~~~--- 107 (211)
-..|||||||.|+|| | +|-|+|+-+||+|+|+++.+.++ ++++|+++|+. .+++..++
T Consensus 4 irKAViPaAGlGTRfLPATKaiPKEMLPIvdKP~IqYiVeEa~~a-GIe~i~iVTgr~K~~IeDhFD~s~ELE~~L~~~~ 82 (291)
T COG1210 4 IRKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYIVEEAVAA-GIEEILIVTGRGKRAIEDHFDTSYELENTLEKRG 82 (291)
T ss_pred ccEEEEEccCcccccccccccCchhhccccCchhHHHHHHHHHHc-CCCEEEEEecCCcchHHHhCcCcHHHHHHHHHhC
Confidence 346999999999999 4 69999999999999999999998 69999999851 12222211
Q ss_pred ---------Hc--CCeEeeCCccc-CCChHHHHHHHHhhccCCCEEEEEcCCCcCCC-HHHHHHHHHHHHhCCCeEEEEe
Q 028257 108 ---------QF--GADVIMTSESC-RNGTERCNEALQKLEKKYDIVVNIQGDEPLIE-PEIIDGVVKALQAAPDAVFSTA 174 (211)
Q Consensus 108 ---------~~--~v~vi~~~~~~-~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~-~~~i~~li~~~~~~~d~vv~v~ 174 (211)
+. .+++.+..+.. .|-..++..|=..+ .++.|.|+.+|.-..+ ...+..|++.+.+...+++++.
T Consensus 83 K~~~L~~v~~i~~~~~i~~vRQ~e~~GLGhAVl~A~~~v--g~EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~g~svi~v~ 160 (291)
T COG1210 83 KRELLEEVRSIPPLVTISFVRQKEPLGLGHAVLCAKPFV--GDEPFAVLLPDDLVDSEKPCLKQMIELYEETGGSVIGVE 160 (291)
T ss_pred HHHHHHHHHhcccCceEEEEecCCCCcchhHHHhhhhhc--CCCceEEEeCCeeecCCchHHHHHHHHHHHhCCcEEEEE
Confidence 11 23443322222 33345665565656 4678999999986665 5688999999987777888877
Q ss_pred ee
Q 028257 175 VT 176 (211)
Q Consensus 175 ~~ 176 (211)
..
T Consensus 161 ev 162 (291)
T COG1210 161 EV 162 (291)
T ss_pred EC
Confidence 43
No 96
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=98.91 E-value=1.1e-08 Score=91.36 Aligned_cols=155 Identities=18% Similarity=0.184 Sum_probs=109.9
Q ss_pred CCcEEEEEecCCCCCCCC------CccccccCCe-ehHHHHHHHHHcCCCCCeEEEEcCcHH--HHHHHH---Hc-----
Q 028257 47 RSRVVGIIPARFASSRFE------GKPLVNILGK-PMIQRTWERSKLATTLDHLVVATDDEK--IAECCQ---QF----- 109 (211)
Q Consensus 47 ~m~i~aIIlA~G~ssRlg------~K~ll~l~Gk-pLl~~~i~~l~~~~~id~IVVvt~~e~--i~~~~~---~~----- 109 (211)
+.++.++|||||.|+||. .|+-.|++|| -+|..+|..+.++ ++.+|.|.|+... +..... .+
T Consensus 3 ~~~~laiILaGg~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNS-Gi~~I~VltQy~~~SL~~Hi~~G~~w~l~~~ 81 (393)
T COG0448 3 KKNVLAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNS-GIRRIGVLTQYKSHSLNDHIGRGWPWDLDRK 81 (393)
T ss_pred ccceEEEEEcCCCCCccchhhhCccccccccCceeEEEeEEccccccc-CCCeEEEEeccchhHHHHHhhCCCccccccc
Confidence 346789999999999995 4999999996 8999999999998 6999999997432 222221 11
Q ss_pred --CCeEee------CCcccCCChHHHHHHHHhhc-cCCCEEEEEcCCCcCCCHHHHHHHHHHHH-hCCCeEEEEeeeeCC
Q 028257 110 --GADVIM------TSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQ-AAPDAVFSTAVTSLK 179 (211)
Q Consensus 110 --~v~vi~------~~~~~~g~~~si~~al~~l~-~~~d~vlv~~~D~Pli~~~~i~~li~~~~-~~~d~vv~v~~~~~~ 179 (211)
++.++. .+.+++|+..++++=+..+. .+.|+++++.+|+ +-.-+++.+++.+. .++|.++++. ++.
T Consensus 82 ~~~v~ilp~~~~~~~~~wy~Gtadai~Qnl~~i~~~~~eyvlIlsgDh--IYkmDy~~ml~~H~~~gadiTv~~~--~Vp 157 (393)
T COG0448 82 NGGVFILPAQQREGGERWYEGTADAIYQNLLIIRRSDPEYVLILSGDH--IYKMDYSDMLDFHIESGADVTVAVK--EVP 157 (393)
T ss_pred cCcEEEeCchhccCCCcceeccHHHHHHhHHHHHhcCCCEEEEecCCE--EEecCHHHHHHHHHHcCCCEEEEEE--ECC
Confidence 222222 11256677777776555554 3578999999998 55778999999885 4566665554 443
Q ss_pred CCCCCCCCCeEEEeCCCccEEeeecCCCC
Q 028257 180 PEDAFDPNRVKCVVDNHGYAIYFSRGLIP 208 (211)
Q Consensus 180 ~~~~~d~~~~~~v~~~~~~~~~~~~~~~~ 208 (211)
.++.. +.-..-.|++|++..|.+++.+
T Consensus 158 ~~eas--~fGim~~D~~~~i~~F~eKp~~ 184 (393)
T COG0448 158 REEAS--RFGVMNVDENGRIIEFVEKPAD 184 (393)
T ss_pred hHhhh--hcCceEECCCCCEEeeeeccCc
Confidence 32222 1236778999999999998765
No 97
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=98.51 E-value=6.2e-06 Score=70.96 Aligned_cols=107 Identities=18% Similarity=0.121 Sum_probs=70.6
Q ss_pred EEEEEecCCCCCCCC---CccccccC---CeehHHHHHHHHHcC-------CCCCeEEEEcC--cHHHHHHHHHcC----
Q 028257 50 VVGIIPARFASSRFE---GKPLVNIL---GKPMIQRTWERSKLA-------TTLDHLVVATD--DEKIAECCQQFG---- 110 (211)
Q Consensus 50 i~aIIlA~G~ssRlg---~K~ll~l~---GkpLl~~~i~~l~~~-------~~id~IVVvt~--~e~i~~~~~~~~---- 110 (211)
+++||||||.|+||+ +|++++++ |+|++++.++++... ..+..++++++ ++.+.++++++.
T Consensus 1 va~viLaGG~GtRLg~~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~~~~~~ 80 (266)
T cd04180 1 VAVVLLAGGLGTRLGKDGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKINQKNS 80 (266)
T ss_pred CEEEEECCCCccccCCCCCceeeeecCCCCCcHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHcCCCCC
Confidence 368999999999997 69999999 999999999999863 23555555554 466777776643
Q ss_pred -CeEeeCC-------------------cccCCChHHHHHHHHh------hc-cCCCEEEEEcCCCcCCCHHHH
Q 028257 111 -ADVIMTS-------------------ESCRNGTERCNEALQK------LE-KKYDIVVNIQGDEPLIEPEII 156 (211)
Q Consensus 111 -v~vi~~~-------------------~~~~g~~~si~~al~~------l~-~~~d~vlv~~~D~Pli~~~~i 156 (211)
+.++... .....+...++.+|.. +. ...+++.+...|.++....+-
T Consensus 81 ~v~~f~Q~~~P~~~~~~~~~~~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~v~DP 153 (266)
T cd04180 81 YVITFMQGKLPLKNDDDARDPHNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKVADP 153 (266)
T ss_pred ceEEEEeCCceEEeCCCCcccCCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCccccCH
Confidence 1112110 0112233344444432 21 346899999999988866333
No 98
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=98.25 E-value=3.5e-05 Score=68.09 Aligned_cols=111 Identities=20% Similarity=0.241 Sum_probs=72.9
Q ss_pred cEEEEEecCCCCCCCC---CccccccC---CeehHHHHHHHHHcCC-----------CCCeEEEEcC---cHHHHHHHHH
Q 028257 49 RVVGIIPARFASSRFE---GKPLVNIL---GKPMIQRTWERSKLAT-----------TLDHLVVATD---DEKIAECCQQ 108 (211)
Q Consensus 49 ~i~aIIlA~G~ssRlg---~K~ll~l~---GkpLl~~~i~~l~~~~-----------~id~IVVvt~---~e~i~~~~~~ 108 (211)
++.+||||||.|+||+ +|++++++ |+|++++.+++++... .+ ++++.|+ ++.+.+++++
T Consensus 15 ~va~viLaGG~GTRLg~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~i-p~~imtS~~t~~~t~~~~~~ 93 (323)
T cd04193 15 KVAVLLLAGGQGTRLGFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPI-PWYIMTSEATHEETRKFFKE 93 (323)
T ss_pred CEEEEEECCCcccccCCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCc-eEEEEcChhHhHHHHHHHHh
Confidence 5789999999999997 69999997 7999999999998742 23 4456554 5667777764
Q ss_pred ---cCC---eE--eeCC----------------c---ccCCChHHHHHHHHh------hc-cCCCEEEEEcCCCcCC---
Q 028257 109 ---FGA---DV--IMTS----------------E---SCRNGTERCNEALQK------LE-KKYDIVVNIQGDEPLI--- 151 (211)
Q Consensus 109 ---~~v---~v--i~~~----------------~---~~~g~~~si~~al~~------l~-~~~d~vlv~~~D~Pli--- 151 (211)
+|. .+ +..+ . ..++|...++.+|.. +. ..-+++.+...|.++.
T Consensus 94 ~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~L~~~~ 173 (323)
T cd04193 94 NNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDNILVKVA 173 (323)
T ss_pred CCcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCccccccc
Confidence 233 22 2110 0 112344455555543 21 2468999999999864
Q ss_pred CHHHHHHHH
Q 028257 152 EPEIIDGVV 160 (211)
Q Consensus 152 ~~~~i~~li 160 (211)
++..+--++
T Consensus 174 Dp~~lG~~~ 182 (323)
T cd04193 174 DPVFIGFCI 182 (323)
T ss_pred CHHHhHHHH
Confidence 555554444
No 99
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=98.11 E-value=4.2e-05 Score=70.89 Aligned_cols=113 Identities=23% Similarity=0.225 Sum_probs=73.7
Q ss_pred CcEEEEEecCCCCCCCC---Ccccccc---CCeehHHHHHHHHHcCC-------------CCCeEEEEcC---cHHHHHH
Q 028257 48 SRVVGIIPARFASSRFE---GKPLVNI---LGKPMIQRTWERSKLAT-------------TLDHLVVATD---DEKIAEC 105 (211)
Q Consensus 48 m~i~aIIlA~G~ssRlg---~K~ll~l---~GkpLl~~~i~~l~~~~-------------~id~IVVvt~---~e~i~~~ 105 (211)
.++.+||||||.|+||+ +|+++++ .|+|++++.++++.... .+ +++|.|+ ++.+.++
T Consensus 105 gkvavViLAGG~GTRLg~~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~~~~~~~~~~~I-p~~IMTS~~t~~~t~~~ 183 (482)
T PTZ00339 105 GEVAVLILAGGLGTRLGSDKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAVAVSGGGDDPTI-YILVLTSSFNHDQTRQF 183 (482)
T ss_pred CCeEEEEECCCCcCcCCCCCCCeEeeecCCCCccHHHHHHHHHHHHhhhhhcccccccCCCC-CEEEEeCcchHHHHHHH
Confidence 35889999999999997 6999999 58999999999998641 23 4455543 4666676
Q ss_pred HHHc---CC-----eEeeCC-----------------c---ccCCChHHHHHHHHh------hc-cCCCEEEEEcCCCcC
Q 028257 106 CQQF---GA-----DVIMTS-----------------E---SCRNGTERCNEALQK------LE-KKYDIVVNIQGDEPL 150 (211)
Q Consensus 106 ~~~~---~v-----~vi~~~-----------------~---~~~g~~~si~~al~~------l~-~~~d~vlv~~~D~Pl 150 (211)
+++. |. .++... . ..++|...++.+|.. +. ..-+++.+...|.++
T Consensus 184 f~~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L 263 (482)
T PTZ00339 184 LEENNFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVISIDNIL 263 (482)
T ss_pred HHhccccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEecCccc
Confidence 6532 21 111110 0 012334456666543 21 236799999999995
Q ss_pred C---CHHHHHHHHH
Q 028257 151 I---EPEIIDGVVK 161 (211)
Q Consensus 151 i---~~~~i~~li~ 161 (211)
. +|..+-.+++
T Consensus 264 ~k~~DP~flG~~~~ 277 (482)
T PTZ00339 264 AKVLDPEFIGLASS 277 (482)
T ss_pred ccccCHHHhHHHHH
Confidence 5 6666665554
No 100
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=0.00047 Score=64.96 Aligned_cols=151 Identities=17% Similarity=0.289 Sum_probs=102.8
Q ss_pred CCcEEEEEecCCCCCCC-C-----CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHH--cC--CeE-
Q 028257 47 RSRVVGIIPARFASSRF-E-----GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQ--FG--ADV- 113 (211)
Q Consensus 47 ~m~i~aIIlA~G~ssRl-g-----~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~--~~--v~v- 113 (211)
..++.||++|=..-+|| | ++.|+|+.+.|||+|+++-|..+ ++.+++|.+. ..++.++.++ +. ...
T Consensus 22 ~~rLqAIllaDsf~trF~Plt~~~p~~LLPlaNVpmIdYtL~~L~~a-gV~eVfvfc~~~~~qi~e~i~~sew~~~~~~~ 100 (673)
T KOG1461|consen 22 EHRLQAILLADSFETRFRPLTLEKPRVLLPLANVPMIDYTLEWLERA-GVEEVFVFCSAHAAQIIEYIEKSEWYLPMSFI 100 (673)
T ss_pred ccceEEEEEeccchhcccccccCCCceEeeecCchHHHHHHHHHHhc-CceEEEEEecccHHHHHHHHhhccccccccce
Confidence 35788999999999998 3 58999999999999999999987 6999999885 6777877764 11 111
Q ss_pred eeCCcccCCChHHHHHHHHhhcc---CCCEEEEEcCCCcCCCHHHHHHHHHHH----HhCCCeEEEEeeeeCCCCCCCCC
Q 028257 114 IMTSESCRNGTERCNEALQKLEK---KYDIVVNIQGDEPLIEPEIIDGVVKAL----QAAPDAVFSTAVTSLKPEDAFDP 186 (211)
Q Consensus 114 i~~~~~~~g~~~si~~al~~l~~---~~d~vlv~~~D~Pli~~~~i~~li~~~----~~~~d~vv~v~~~~~~~~~~~d~ 186 (211)
+.. ...+...++--+|+.+.. ..+.|+++.+|. ++.-.+.++++.+ ++..+++++....+-+ +....
T Consensus 101 v~t--i~s~~~~S~GDamR~id~k~litgDFiLVsgd~--vsN~pl~~~l~eHr~r~k~Dk~~iMTmv~k~~s--t~~~~ 174 (673)
T KOG1461|consen 101 VVT--ICSGESRSVGDAMRDIDEKQLITGDFILVSGDT--VSNMPLRNVLEEHRKRRKEDKDAIMTMVFKESS--TRETT 174 (673)
T ss_pred EEE--EcCCCcCcHHHHHHHHHhcceeecceEEEeCCe--eecCchHHHHHHHHHHhhhCccceEEEEEeccc--cccCC
Confidence 110 111223345566766642 246788899997 5567889999988 3456777766554422 22334
Q ss_pred CCeEEEeCCCcc-EEeeec
Q 028257 187 NRVKCVVDNHGY-AIYFSR 204 (211)
Q Consensus 187 ~~~~~v~~~~~~-~~~~~~ 204 (211)
+.+..++|+.-. .++|.+
T Consensus 175 ~~~~~avd~~T~~ll~yq~ 193 (673)
T KOG1461|consen 175 EQVVIAVDSRTSRLLHYQK 193 (673)
T ss_pred cceEEEEcCCcceEEeehh
Confidence 566666666544 567765
No 101
>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]
Probab=97.51 E-value=0.00063 Score=55.55 Aligned_cols=108 Identities=23% Similarity=0.342 Sum_probs=77.5
Q ss_pred EEEecC---CCCCCCCC-------ccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccC
Q 028257 52 GIIPAR---FASSRFEG-------KPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCR 121 (211)
Q Consensus 52 aIIlA~---G~ssRlg~-------K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~ 121 (211)
+|||-. +.-||+.+ |.+. .-||.+++.++... +.+|.|++.++++...+.++ ++... .
T Consensus 3 ~iIPvk~~~~aKTRLs~~lS~eeRe~~~----laML~dvi~Al~~~--~~~i~Vvtpde~~~~~a~~~--~vl~d----~ 70 (210)
T COG1920 3 AIIPVKRLADAKTRLSPVLSAEERENFA----LAMLVDVLGALAGV--LGEITVVTPDEEVLVPATKL--EVLAD----P 70 (210)
T ss_pred eEEeccccCcchhccccccCHHHHHHHH----HHHHHHHHHHhhhh--cCCceEEcCChHhhhhcccc--eeeec----c
Confidence 466643 45577752 5554 57899999999853 78999999888766655443 44443 1
Q ss_pred CChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEE
Q 028257 122 NGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFST 173 (211)
Q Consensus 122 g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v 173 (211)
+-..++.++++.++.. +-++++++|.|+++++.|+++++.... +|.+++-
T Consensus 71 dLN~Ai~aa~~~~~~p-~~v~vvmaDLPLl~~~~i~~~~~~~~d-~dvviaP 120 (210)
T COG1920 71 DLNTAINAALDEIPLP-SEVIVVMADLPLLSPEHIERALSAAKD-ADVVIAP 120 (210)
T ss_pred chHHHHHHHHhhCCCC-cceEEEecccccCCHHHHHHHHHhcCC-CcEEEec
Confidence 2235678888887643 679999999999999999999988754 5666653
No 102
>PF01983 CofC: Guanylyl transferase CofC like; InterPro: IPR002835 Coenzyme F 420 is a hydride carrier cofactor functioning in methanogenesis. One step in the biosynthesis of coenzyme F 420 involves the coupling of 2-phospho- l-lactate (LP) to 7,8-didemethyl-8-hydroxy-5-deazaflavin, the F 420 chromophore. This condensation requires an initial activation of 2-phospho- l-lactate through a pyrophosphate linkage to GMP. MJ0887 from Methanocaldococcus jannaschii has domain similarity with other known nucleotidyl transferases and was demonstrated to catalyse the formation of lactyl-2-diphospho-5'-guanosine from LP and GTP, which is the third step in the biosynthesis of coenzyme F 420 []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 2I5E_B.
Probab=97.46 E-value=0.00016 Score=60.41 Aligned_cols=109 Identities=27% Similarity=0.404 Sum_probs=59.8
Q ss_pred EEEEecCCCC---CCCCC-------ccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHH-HcCCeEeeCCcc
Q 028257 51 VGIIPARFAS---SRFEG-------KPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQ-QFGADVIMTSES 119 (211)
Q Consensus 51 ~aIIlA~G~s---sRlg~-------K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~-~~~v~vi~~~~~ 119 (211)
.+|||....+ ||+.+ ..|. +.|+.+++.++.. ++ ++|++.++.+..++. .+++.++..+
T Consensus 2 ~~VIPvK~~~~aKSRLs~~L~~~eR~~La----~aMl~Dvl~al~~---v~-v~vVs~d~~v~~~a~~~~g~~vl~d~-- 71 (217)
T PF01983_consen 2 RAVIPVKPLARAKSRLSPVLSPEEREALA----LAMLRDVLAALRA---VD-VVVVSRDPEVAALARARLGAEVLPDP-- 71 (217)
T ss_dssp EEEEE---TT-TTGGGTTTS-HHHHHHHH----HHHHHHHHHHHHH----S-EEEEES--S-TTTTT---SSEEEE----
T ss_pred eEEEEcCCCCccccccCccCCHHHHHHHH----HHHHHHHHHHHHh---cC-eEEeccchhhhhhhhhccCCeEecCC--
Confidence 4788876544 67741 2222 5789999999976 66 888888777776655 6788887654
Q ss_pred cCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEE
Q 028257 120 CRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFS 172 (211)
Q Consensus 120 ~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~ 172 (211)
..|-..++..++... ..+.++++++|.|+++++.|+.+++...+ .+.+++
T Consensus 72 ~~gLN~Al~~a~~~~--~~~~vlvl~aDLPll~~~dl~~~l~~~~~-~~vvia 121 (217)
T PF01983_consen 72 GRGLNAALNAALAAA--GDDPVLVLPADLPLLTPEDLDALLAAAGR-ADVVIA 121 (217)
T ss_dssp -S-HHHHHHHHHH-H----S-EEEE-S--TT--HHHHHHHCT-SS---SEEEE
T ss_pred CCCHHHHHHHHHhcc--CCCceEEeecCCccCCHHHHHHHHhccCC-CCEEEe
Confidence 223335566664433 46789999999999999999999987643 355554
No 103
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=97.36 E-value=0.0088 Score=49.51 Aligned_cols=96 Identities=23% Similarity=0.314 Sum_probs=68.0
Q ss_pred CCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHHcCCeEeeCCcccCCChHHHHHHHHhhccCCCEEEEEcCCCc
Q 028257 72 LGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEP 149 (211)
Q Consensus 72 ~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~~~v~vi~~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~P 149 (211)
++...|+.+|+.+... .++|+|+-+ .+...++++.++++++.. ...|...+...|++.+ ..|+++++++|.
T Consensus 10 Ne~~~l~~~l~sl~~~--~~eiivvD~gStD~t~~i~~~~~~~v~~~--~~~g~~~~~n~~~~~a--~~d~vl~lDaD~- 82 (229)
T cd02511 10 NEERNIERCLESVKWA--VDEIIVVDSGSTDRTVEIAKEYGAKVYQR--WWDGFGAQRNFALELA--TNDWVLSLDADE- 82 (229)
T ss_pred CcHHHHHHHHHHHhcc--cCEEEEEeCCCCccHHHHHHHcCCEEEEC--CCCChHHHHHHHHHhC--CCCEEEEEeCCc-
Confidence 4456788888888643 478887764 355667777888887665 2234445556688876 478999999998
Q ss_pred CCCHHHHHHHHHHHHhCCCeEEEEe
Q 028257 150 LIEPEIIDGVVKALQAAPDAVFSTA 174 (211)
Q Consensus 150 li~~~~i~~li~~~~~~~d~vv~v~ 174 (211)
.++++.++.+.+.+.+++...+...
T Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~~~~ 107 (229)
T cd02511 83 RLTPELADEILALLATDDYDGYYVP 107 (229)
T ss_pred CcCHHHHHHHHHHHhCCCCcEEEEE
Confidence 7899999999998876554333333
No 104
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=97.25 E-value=0.012 Score=47.80 Aligned_cols=92 Identities=13% Similarity=0.236 Sum_probs=61.8
Q ss_pred ehHHHHHHHHHcCCCCC---eEEEEcC--cHHHHHHHHHcCC----eEeeCCcccCCChHHHHHHHHhhccCCCEEEEEc
Q 028257 75 PMIQRTWERSKLATTLD---HLVVATD--DEKIAECCQQFGA----DVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQ 145 (211)
Q Consensus 75 pLl~~~i~~l~~~~~id---~IVVvt~--~e~i~~~~~~~~v----~vi~~~~~~~g~~~si~~al~~l~~~~d~vlv~~ 145 (211)
.+++.+++.+.+...-+ +|+|+.| .+...++++.+.. .++..+....+....+..|++.. +.|++++++
T Consensus 15 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~a--~~d~i~~lD 92 (234)
T cd06421 15 EIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAELGVEYGYRYLTRPDNRHAKAGNLNNALAHT--TGDFVAILD 92 (234)
T ss_pred HHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHHhhcccCceEEEeCCCCCCcHHHHHHHHHhC--CCCEEEEEc
Confidence 46788888888654433 6777664 3555566655543 44443322222234567788876 589999999
Q ss_pred CCCcCCCHHHHHHHHHHHHhCCCe
Q 028257 146 GDEPLIEPEIIDGVVKALQAAPDA 169 (211)
Q Consensus 146 ~D~Pli~~~~i~~li~~~~~~~d~ 169 (211)
+|. .++++.+..+++.+.++++.
T Consensus 93 ~D~-~~~~~~l~~l~~~~~~~~~~ 115 (234)
T cd06421 93 ADH-VPTPDFLRRTLGYFLDDPKV 115 (234)
T ss_pred ccc-CcCccHHHHHHHHHhcCCCe
Confidence 998 77999999999998764443
No 105
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=97.20 E-value=0.01 Score=52.36 Aligned_cols=117 Identities=15% Similarity=0.170 Sum_probs=70.7
Q ss_pred CCCCCcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cHH----HHHHHHHcCCeEee-C
Q 028257 44 KNFRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEK----IAECCQQFGADVIM-T 116 (211)
Q Consensus 44 ~~~~m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~----i~~~~~~~~v~vi~-~ 116 (211)
++.++++.+|||+--....+ ..+++.+.+.+.+...--+|+|+-| .+. +++..++.+..+.. .
T Consensus 2 ~~~~~~vSVVIP~yNE~~~i----------~~~l~~l~~~~~~~~~~~EIIvVDDgS~D~T~~il~~~~~~~~~~v~~i~ 71 (325)
T PRK10714 2 IHPIKKVSVVIPVYNEQESL----------PELIRRTTAACESLGKEYEILLIDDGSSDNSAEMLVEAAQAPDSHIVAIL 71 (325)
T ss_pred CCCCCeEEEEEcccCchhhH----------HHHHHHHHHHHHhCCCCEEEEEEeCCCCCcHHHHHHHHHhhcCCcEEEEE
Confidence 45667789999985444432 2344444444443322236766654 222 22333333444421 1
Q ss_pred CcccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEE
Q 028257 117 SESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFST 173 (211)
Q Consensus 117 ~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v 173 (211)
...-.|...++..|+++. +.|+++++++|. -.+++.+.++++.+.++.|.+.+.
T Consensus 72 ~~~n~G~~~A~~~G~~~A--~gd~vv~~DaD~-q~~p~~i~~l~~~~~~~~DvV~~~ 125 (325)
T PRK10714 72 LNRNYGQHSAIMAGFSHV--TGDLIITLDADL-QNPPEEIPRLVAKADEGYDVVGTV 125 (325)
T ss_pred eCCCCCHHHHHHHHHHhC--CCCEEEEECCCC-CCCHHHHHHHHHHHHhhCCEEEEE
Confidence 112235456778888887 579999999999 479999999999987667766443
No 106
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=97.08 E-value=0.0076 Score=56.13 Aligned_cols=113 Identities=19% Similarity=0.267 Sum_probs=70.4
Q ss_pred CcEEEEEecCCCCCCCC---Ccccccc---CCeehHHHHHHHHHcCC-------------CCC-eEEEEcC---cHHHHH
Q 028257 48 SRVVGIIPARFASSRFE---GKPLVNI---LGKPMIQRTWERSKLAT-------------TLD-HLVVATD---DEKIAE 104 (211)
Q Consensus 48 m~i~aIIlA~G~ssRlg---~K~ll~l---~GkpLl~~~i~~l~~~~-------------~id-~IVVvt~---~e~i~~ 104 (211)
.++.+|+||||.|+||| +|-+.++ .|+++++...+++.... .+. .++|-|+ ++...+
T Consensus 115 gkvavvlLAGGqGTRLG~~~PKg~~~Iglps~kslfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~~~T~~ 194 (493)
T PLN02435 115 GKLAVVLLSGGQGTRLGSSDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTDEATRK 194 (493)
T ss_pred CCEEEEEeCCCcccccCCCCCccceecCCCCCCcHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcchhHHHHH
Confidence 46889999999999998 5988866 58999999999875321 111 4456554 466677
Q ss_pred HHHHc---C-----CeEeeCC-------------------cccCCChHHHHHHHHh------hc-cCCCEEEEEcCCCcC
Q 028257 105 CCQQF---G-----ADVIMTS-------------------ESCRNGTERCNEALQK------LE-KKYDIVVNIQGDEPL 150 (211)
Q Consensus 105 ~~~~~---~-----v~vi~~~-------------------~~~~g~~~si~~al~~------l~-~~~d~vlv~~~D~Pl 150 (211)
+++++ | +.++... ...+.|...++.+|.. +. ..-+++.+...|.++
T Consensus 195 ff~~~~~FGl~~~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L 274 (493)
T PLN02435 195 FFESHKYFGLEADQVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVDCYGVDNAL 274 (493)
T ss_pred HHHhCCCCCCCccceEEEecCCcceECCCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEEeccccc
Confidence 76643 2 2222110 0122344456666654 21 246899999999986
Q ss_pred C---CHHHHHHHH
Q 028257 151 I---EPEIIDGVV 160 (211)
Q Consensus 151 i---~~~~i~~li 160 (211)
. +|..+--++
T Consensus 275 ~~~~DP~flG~~~ 287 (493)
T PLN02435 275 VRVADPTFLGYFI 287 (493)
T ss_pred ccccCHHHHHHHH
Confidence 4 555544444
No 107
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=97.05 E-value=0.002 Score=56.43 Aligned_cols=62 Identities=16% Similarity=0.248 Sum_probs=47.2
Q ss_pred CcEEEEEecCCCCCCCC---Ccccccc-CCeehHHHHHHHHHcCC-----CCCeEEEEcC---cHHHHHHHHHcC
Q 028257 48 SRVVGIIPARFASSRFE---GKPLVNI-LGKPMIQRTWERSKLAT-----TLDHLVVATD---DEKIAECCQQFG 110 (211)
Q Consensus 48 m~i~aIIlA~G~ssRlg---~K~ll~l-~GkpLl~~~i~~l~~~~-----~id~IVVvt~---~e~i~~~~~~~~ 110 (211)
.++++|++|||.||||| +|.++++ .|+++++..+++++... .+ .++|-|+ +++..+++++++
T Consensus 2 ~kvavl~LaGG~GTRLG~~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~i-Pl~iMtS~~T~~~T~~~l~~~~ 75 (300)
T cd00897 2 NKLVVLKLNGGLGTSMGCTGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDV-PLVLMNSFNTDEDTKKILKKYA 75 (300)
T ss_pred CcEEEEEecCCcccccCCCCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCc-eEEEECCCcchHHHHHHHHHcC
Confidence 36889999999999997 5999999 68999999999987421 13 4556553 566777776653
No 108
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=97.05 E-value=0.031 Score=51.80 Aligned_cols=64 Identities=6% Similarity=0.104 Sum_probs=47.1
Q ss_pred CCcEEEEEecCCCCCCCC---Ccccccc-CCeehHHHHHHHHHcCC---CCC-eEEEEcC---cHHHHHHHHHcC
Q 028257 47 RSRVVGIIPARFASSRFE---GKPLVNI-LGKPMIQRTWERSKLAT---TLD-HLVVATD---DEKIAECCQQFG 110 (211)
Q Consensus 47 ~m~i~aIIlA~G~ssRlg---~K~ll~l-~GkpLl~~~i~~l~~~~---~id-~IVVvt~---~e~i~~~~~~~~ 110 (211)
..++++|.||||.|+||| +|.++++ .|+++++..++++.... +.+ ..++-++ +++..+++++++
T Consensus 77 L~k~avlkLnGGlGTrmG~~~PKs~i~v~~~~sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k~~ 151 (469)
T PLN02474 77 LDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEKYT 151 (469)
T ss_pred HhcEEEEEecCCcccccCCCCCceeEEcCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHHHcC
Confidence 357899999999999998 6999999 68999998888886421 222 4455553 566677776654
No 109
>PRK11204 N-glycosyltransferase; Provisional
Probab=97.02 E-value=0.041 Score=49.62 Aligned_cols=104 Identities=16% Similarity=0.212 Sum_probs=66.7
Q ss_pred CcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCC-CeEEEEcC--cHHHHH----HHHHcC-CeEeeCCcc
Q 028257 48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTL-DHLVVATD--DEKIAE----CCQQFG-ADVIMTSES 119 (211)
Q Consensus 48 m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~i-d~IVVvt~--~e~i~~----~~~~~~-v~vi~~~~~ 119 (211)
++++++||+-. +...+..+++.+.+.... .+|+|+.| .++..+ +..++. +.++..+ .
T Consensus 54 p~vsViIp~yn--------------e~~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~~~~~~v~~i~~~-~ 118 (420)
T PRK11204 54 PGVSILVPCYN--------------EGENVEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLAAQIPRLRVIHLA-E 118 (420)
T ss_pred CCEEEEEecCC--------------CHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHHHhCCcEEEEEcC-C
Confidence 45777777743 335677788887754322 26766654 233333 333333 4444323 2
Q ss_pred cCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCe
Q 028257 120 CRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDA 169 (211)
Q Consensus 120 ~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~ 169 (211)
-.|...++..|++.. +.|+++++|+|. .++++.+..+++.++++++.
T Consensus 119 n~Gka~aln~g~~~a--~~d~i~~lDaD~-~~~~d~L~~l~~~~~~~~~v 165 (420)
T PRK11204 119 NQGKANALNTGAAAA--RSEYLVCIDGDA-LLDPDAAAYMVEHFLHNPRV 165 (420)
T ss_pred CCCHHHHHHHHHHHc--CCCEEEEECCCC-CCChhHHHHHHHHHHhCCCe
Confidence 235556777888876 589999999999 78999999999999655543
No 110
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=97.02 E-value=0.033 Score=46.03 Aligned_cols=102 Identities=21% Similarity=0.284 Sum_probs=64.7
Q ss_pred CCCcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCC---CeEEEEcC--cHHHHHHHHHcC---CeEeeCC
Q 028257 46 FRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTL---DHLVVATD--DEKIAECCQQFG---ADVIMTS 117 (211)
Q Consensus 46 ~~m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~i---d~IVVvt~--~e~i~~~~~~~~---v~vi~~~ 117 (211)
.++++.+||++-+.. ..|..+++.+.+...- -+++|+.| ++...++++++. +.++..+
T Consensus 27 ~~~~isVvip~~n~~--------------~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~v~~i~~~ 92 (251)
T cd06439 27 YLPTVTIIIPAYNEE--------------AVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADKGVKLLRFP 92 (251)
T ss_pred CCCEEEEEEecCCcH--------------HHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhCcEEEEEcC
Confidence 345677888875433 4455566665543222 25766664 344445554443 4455443
Q ss_pred cccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh
Q 028257 118 ESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 165 (211)
Q Consensus 118 ~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~ 165 (211)
...|...++..|++.. ..|+++++++|. .++++.+.++++.+.+
T Consensus 93 -~~~g~~~a~n~gi~~a--~~d~i~~lD~D~-~~~~~~l~~l~~~~~~ 136 (251)
T cd06439 93 -ERRGKAAALNRALALA--TGEIVVFTDANA-LLDPDALRLLVRHFAD 136 (251)
T ss_pred -CCCChHHHHHHHHHHc--CCCEEEEEcccc-CcCHHHHHHHHHHhcC
Confidence 2345556677888877 469999999999 5679999999999863
No 111
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=97.00 E-value=0.00098 Score=58.70 Aligned_cols=103 Identities=16% Similarity=0.118 Sum_probs=67.2
Q ss_pred EEEEecCCCCCCCC---Ccccccc---CCeehHHHHHHHHHcCCC-------C-CeEEEEcC---cHHHHHHHHHc---C
Q 028257 51 VGIIPARFASSRFE---GKPLVNI---LGKPMIQRTWERSKLATT-------L-DHLVVATD---DEKIAECCQQF---G 110 (211)
Q Consensus 51 ~aIIlA~G~ssRlg---~K~ll~l---~GkpLl~~~i~~l~~~~~-------i-d~IVVvt~---~e~i~~~~~~~---~ 110 (211)
++|++|||.|+||| +|-++++ .|+++++..+++++.... . =.++|.|+ +++..++++++ |
T Consensus 2 a~vllaGG~GTRLG~~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~n~yFG 81 (315)
T cd06424 2 VFVLVAGGLGERLGYSGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEENNYFG 81 (315)
T ss_pred EEEEecCCCccccCCCCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHHCCccC
Confidence 57899999999997 5999998 689999999999875321 1 14566664 56677777642 2
Q ss_pred C-----eEeeC------------------Cc----ccCCChHHHHHHHHhh-------ccCCCEEEEEcCCCcCCCH
Q 028257 111 A-----DVIMT------------------SE----SCRNGTERCNEALQKL-------EKKYDIVVNIQGDEPLIEP 153 (211)
Q Consensus 111 v-----~vi~~------------------~~----~~~g~~~si~~al~~l-------~~~~d~vlv~~~D~Pli~~ 153 (211)
. .++.. .+ ..++|...++.+|..- ...-+++.+...|.++...
T Consensus 82 l~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L~~~ 158 (315)
T cd06424 82 LEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNALAFK 158 (315)
T ss_pred CCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhhhhc
Confidence 1 11110 00 1123444566666542 1246799999999998765
No 112
>PLN02830 UDP-sugar pyrophosphorylase
Probab=96.88 E-value=0.018 Score=55.15 Aligned_cols=115 Identities=14% Similarity=0.051 Sum_probs=73.1
Q ss_pred CcEEEEEecCCCCCCCC---Ccccccc---CCeehHHHHHHHHHcCC-----------CCCeEEEEcC---cHHHHHHHH
Q 028257 48 SRVVGIIPARFASSRFE---GKPLVNI---LGKPMIQRTWERSKLAT-----------TLDHLVVATD---DEKIAECCQ 107 (211)
Q Consensus 48 m~i~aIIlA~G~ssRlg---~K~ll~l---~GkpLl~~~i~~l~~~~-----------~id~IVVvt~---~e~i~~~~~ 107 (211)
.++++|+||||.|+||| +|-++++ .|+++++..++++...+ ..-.++|-|+ +++..++++
T Consensus 127 ~kvavllLaGGlGTRLG~~~pK~~lpv~~~~gkt~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T~~~~~ 206 (615)
T PLN02830 127 GNAAFVLVAGGLGERLGYSGIKVALPTETATGTCYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHARTLKLLE 206 (615)
T ss_pred CcEEEEEecCCcccccCCCCCCcceecccCCCCcHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHHHHHHH
Confidence 47889999999999997 5989986 58999999999986531 1114566664 566777776
Q ss_pred HcC--------CeEeeC--------C----------c----ccCCChHHHHHHHHhh-------ccCCCEEEEEcCCCcC
Q 028257 108 QFG--------ADVIMT--------S----------E----SCRNGTERCNEALQKL-------EKKYDIVVNIQGDEPL 150 (211)
Q Consensus 108 ~~~--------v~vi~~--------~----------~----~~~g~~~si~~al~~l-------~~~~d~vlv~~~D~Pl 150 (211)
++. +.++.. + + ..++|...++.+|..- ...-+++++...|.|+
T Consensus 207 ~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~vDN~L 286 (615)
T PLN02830 207 RNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQDTNGL 286 (615)
T ss_pred HCCccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEeccchh
Confidence 532 111111 0 0 0223344566655432 1245899999999988
Q ss_pred CCHHHHHHHHHHH
Q 028257 151 IEPEIIDGVVKAL 163 (211)
Q Consensus 151 i~~~~i~~li~~~ 163 (211)
+...+ -.++..+
T Consensus 287 ~~~Ad-p~flG~~ 298 (615)
T PLN02830 287 VFKAI-PAALGVS 298 (615)
T ss_pred hhccc-HHHhHHH
Confidence 86655 3344443
No 113
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=96.84 E-value=0.041 Score=43.59 Aligned_cols=100 Identities=20% Similarity=0.262 Sum_probs=66.3
Q ss_pred CCeehHHHHHHHHHcCCC---CCeEEEEcC--cHHHHHHHHHcCCeEeeCCcc-cCCChHHHHHHHHhhc---cCCCEEE
Q 028257 72 LGKPMIQRTWERSKLATT---LDHLVVATD--DEKIAECCQQFGADVIMTSES-CRNGTERCNEALQKLE---KKYDIVV 142 (211)
Q Consensus 72 ~GkpLl~~~i~~l~~~~~---id~IVVvt~--~e~i~~~~~~~~v~vi~~~~~-~~g~~~si~~al~~l~---~~~d~vl 142 (211)
+....|..+++.+.+... ..+|+|+.+ .+...++++.++..++..... ..|...++..+++.+. .+.|+++
T Consensus 7 ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~~~~~~~~~~~~~~~~~gk~~aln~g~~~a~~~~~~~d~v~ 86 (183)
T cd06438 7 NEEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVARAAGATVLERHDPERRGKGYALDFGFRHLLNLADDPDAVV 86 (183)
T ss_pred chHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCEEE
Confidence 445678888888876432 125666654 355666777777666543322 2233445666776652 2478999
Q ss_pred EEcCCCcCCCHHHHHHHHHHHHhCCCeEEE
Q 028257 143 NIQGDEPLIEPEIIDGVVKALQAAPDAVFS 172 (211)
Q Consensus 143 v~~~D~Pli~~~~i~~li~~~~~~~d~vv~ 172 (211)
++++|. .+.++.+..++..+.++.+.+.+
T Consensus 87 ~~DaD~-~~~p~~l~~l~~~~~~~~~~v~g 115 (183)
T cd06438 87 VFDADN-LVDPNALEELNARFAAGARVVQA 115 (183)
T ss_pred EEcCCC-CCChhHHHHHHHHHhhCCCeeEE
Confidence 999999 67899999999999766665544
No 114
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=96.84 E-value=0.035 Score=48.58 Aligned_cols=111 Identities=20% Similarity=0.213 Sum_probs=70.2
Q ss_pred CCCcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcC---CCCCeEEEEcC--cHHHHHHHHHcCCeEeeCC---
Q 028257 46 FRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLA---TTLDHLVVATD--DEKIAECCQQFGADVIMTS--- 117 (211)
Q Consensus 46 ~~m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~---~~id~IVVvt~--~e~i~~~~~~~~v~vi~~~--- 117 (211)
..+++.+|||+-.. ...|..+++.+.+. ....+|+|+-| .+...+++++++.+++...
T Consensus 29 ~~~~vSVVIPayNe--------------e~~I~~~l~sl~~~~~~~~~~EIIVVDDgStD~T~~ia~~~~~~v~~~~~~~ 94 (306)
T PRK13915 29 AGRTVSVVLPALNE--------------EETVGKVVDSIRPLLMEPLVDELIVIDSGSTDATAERAAAAGARVVSREEIL 94 (306)
T ss_pred CCCCEEEEEecCCc--------------HHHHHHHHHHHHHHhccCCCcEEEEEeCCCccHHHHHHHHhcchhhcchhhh
Confidence 45679999999533 34455556655532 23457877764 3555566666665542211
Q ss_pred ---cccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhC--CCeEEE
Q 028257 118 ---ESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA--PDAVFS 172 (211)
Q Consensus 118 ---~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~--~d~vv~ 172 (211)
..-.|...++..|+... +.|+++++++|.-..+++.+..+++.+..+ .+.+.+
T Consensus 95 ~~~~~n~Gkg~A~~~g~~~a--~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V~g 152 (306)
T PRK13915 95 PELPPRPGKGEALWRSLAAT--TGDIVVFVDADLINFDPMFVPGLLGPLLTDPGVHLVKA 152 (306)
T ss_pred hccccCCCHHHHHHHHHHhc--CCCEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEE
Confidence 11234445677787765 579999999998557899999999988533 344444
No 115
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=96.78 E-value=0.041 Score=53.60 Aligned_cols=92 Identities=16% Similarity=0.294 Sum_probs=65.1
Q ss_pred hHHHHHHHHHcCCCC-C--eEEEEcCc--------------------HHHHHHHHHcCCeEeeCCcccCCChHHHHHHHH
Q 028257 76 MIQRTWERSKLATTL-D--HLVVATDD--------------------EKIAECCQQFGADVIMTSESCRNGTERCNEALQ 132 (211)
Q Consensus 76 Ll~~~i~~l~~~~~i-d--~IVVvt~~--------------------e~i~~~~~~~~v~vi~~~~~~~g~~~si~~al~ 132 (211)
+++.+++.+.+...- + +|+|+-|. ++++++++++++.++.+++...+....+..|++
T Consensus 146 iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~~~~v~yi~r~~n~~~KAgnLN~al~ 225 (713)
T TIGR03030 146 IVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRKLGVNYITRPRNVHAKAGNINNALK 225 (713)
T ss_pred HHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHHHcCcEEEECCCCCCCChHHHHHHHH
Confidence 667788887754332 2 56666542 355667777888877665443334556788888
Q ss_pred hhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeE
Q 028257 133 KLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAV 170 (211)
Q Consensus 133 ~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~v 170 (211)
+. +.|+++++|+|+ ..+++.+++++..+.++++..
T Consensus 226 ~a--~gd~Il~lDAD~-v~~pd~L~~~v~~f~~dp~v~ 260 (713)
T TIGR03030 226 HT--DGELILIFDADH-VPTRDFLQRTVGWFVEDPKLF 260 (713)
T ss_pred hc--CCCEEEEECCCC-CcChhHHHHHHHHHHhCCCEE
Confidence 87 479999999999 678999999999986655543
No 116
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=96.75 E-value=0.041 Score=40.35 Aligned_cols=94 Identities=18% Similarity=0.301 Sum_probs=57.3
Q ss_pred CeehHHHHHHHHHcCC-CCCeEEEEcC--cHHHHHHHHHcC---C-eEeeCCcccCCChHHHHHHHHhhccCCCEEEEEc
Q 028257 73 GKPMIQRTWERSKLAT-TLDHLVVATD--DEKIAECCQQFG---A-DVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQ 145 (211)
Q Consensus 73 GkpLl~~~i~~l~~~~-~id~IVVvt~--~e~i~~~~~~~~---v-~vi~~~~~~~g~~~si~~al~~l~~~~d~vlv~~ 145 (211)
..++++++++.+.+.. ...+++|+.+ .++..+...+.. . ..........|...++..+++.. +.|++++++
T Consensus 8 ~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~d~v~~~d 85 (156)
T cd00761 8 EEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKKDPRVIRVINEENQGLAAARNAGLKAA--RGEYILFLD 85 (156)
T ss_pred cHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhcCCCeEEEEecCCCChHHHHHHHHHHh--cCCEEEEEC
Confidence 3689999999999864 2457777765 233344333321 1 12222222234445667788876 479999999
Q ss_pred CCCcCCCHHHHHHHHHHHHhCCCe
Q 028257 146 GDEPLIEPEIIDGVVKALQAAPDA 169 (211)
Q Consensus 146 ~D~Pli~~~~i~~li~~~~~~~d~ 169 (211)
+|.. +.++.+..++..+..+.+.
T Consensus 86 ~D~~-~~~~~~~~~~~~~~~~~~~ 108 (156)
T cd00761 86 ADDL-LLPDWLERLVAELLADPEA 108 (156)
T ss_pred CCCc-cCccHHHHHHHHHhcCCCc
Confidence 9995 5677787775555433333
No 117
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=96.75 E-value=0.07 Score=48.90 Aligned_cols=105 Identities=15% Similarity=0.224 Sum_probs=67.5
Q ss_pred CcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCC-C--eEEEEcC--cHHHHHH----HHHc-CCeEeeCC
Q 028257 48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTL-D--HLVVATD--DEKIAEC----CQQF-GADVIMTS 117 (211)
Q Consensus 48 m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~i-d--~IVVvt~--~e~i~~~----~~~~-~v~vi~~~ 117 (211)
+++.+|||+- ++...+..+++.+.+...- + +|+|+-| .++..++ .+++ .+.+...+
T Consensus 49 P~vsVIIP~y--------------Ne~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~~~~~~v~v~~~~ 114 (439)
T TIGR03111 49 PDITIIIPVY--------------NSEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQNEFPGLSLRYMN 114 (439)
T ss_pred CCEEEEEEeC--------------CChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHHHhCCCeEEEEeC
Confidence 4577888773 4456778888888764322 1 4666543 2333332 2332 23443333
Q ss_pred cccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeE
Q 028257 118 ESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAV 170 (211)
Q Consensus 118 ~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~v 170 (211)
+ ..|...++..|++.. +.|+++++++|. .++++.+.++++.+.++++..
T Consensus 115 ~-~~Gka~AlN~gl~~s--~g~~v~~~DaD~-~~~~d~L~~l~~~f~~~~~v~ 163 (439)
T TIGR03111 115 S-DQGKAKALNAAIYNS--IGKYIIHIDSDG-KLHKDAIKNMVTRFENNPDIH 163 (439)
T ss_pred C-CCCHHHHHHHHHHHc--cCCEEEEECCCC-CcChHHHHHHHHHHHhCCCeE
Confidence 2 235456778888876 578999999999 679999999999997665543
No 118
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=96.71 E-value=0.0089 Score=45.17 Aligned_cols=97 Identities=19% Similarity=0.294 Sum_probs=62.0
Q ss_pred CCeehHHHHHHHHHcC-CCCCeEEEEcCc--HHHHHHHHHc-----CCeEeeCCcccCCChHHHHHHHHhhccCCCEEEE
Q 028257 72 LGKPMIQRTWERSKLA-TTLDHLVVATDD--EKIAECCQQF-----GADVIMTSESCRNGTERCNEALQKLEKKYDIVVN 143 (211)
Q Consensus 72 ~GkpLl~~~i~~l~~~-~~id~IVVvt~~--e~i~~~~~~~-----~v~vi~~~~~~~g~~~si~~al~~l~~~~d~vlv 143 (211)
++...|..+++.+.+. ....+|+|+-+. ++..++++++ .+.++..++.. |....+..|++.+ ..+++++
T Consensus 8 n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~~~~~i~~i~~~~n~-g~~~~~n~~~~~a--~~~~i~~ 84 (169)
T PF00535_consen 8 NEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAESDPNIRYIRNPENL-GFSAARNRGIKHA--KGEYILF 84 (169)
T ss_dssp S-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHCCSTTEEEEEHCCCS-HHHHHHHHHHHH----SSEEEE
T ss_pred CCHHHHHHHHHHHhhccCCCEEEEEeccccccccccccccccccccccccccccccc-ccccccccccccc--ceeEEEE
Confidence 4456788888877764 234467776652 3455555543 34555544332 4446677888887 4679999
Q ss_pred EcCCCcCCCHHHHHHHHHHHHhCCCeEEE
Q 028257 144 IQGDEPLIEPEIIDGVVKALQAAPDAVFS 172 (211)
Q Consensus 144 ~~~D~Pli~~~~i~~li~~~~~~~d~vv~ 172 (211)
++.|. .+.+..+..+++.+.++...++.
T Consensus 85 ld~D~-~~~~~~l~~l~~~~~~~~~~~~~ 112 (169)
T PF00535_consen 85 LDDDD-IISPDWLEELVEALEKNPPDVVI 112 (169)
T ss_dssp EETTE-EE-TTHHHHHHHHHHHCTTEEEE
T ss_pred eCCCc-eEcHHHHHHHHHHHHhCCCcEEE
Confidence 99999 67777999999999874443333
No 119
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=96.66 E-value=0.098 Score=47.02 Aligned_cols=111 Identities=14% Similarity=0.142 Sum_probs=67.0
Q ss_pred CCcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCC--CeEEEEcC--cHHHHHH----HHHc----CCeEe
Q 028257 47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTL--DHLVVATD--DEKIAEC----CQQF----GADVI 114 (211)
Q Consensus 47 ~m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~i--d~IVVvt~--~e~i~~~----~~~~----~v~vi 114 (211)
.+++.+|||+.+ +...|..+++.+.+...- -+|+|+-| .|...++ .+++ .+.++
T Consensus 39 ~p~VSVIIpa~N--------------e~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi 104 (384)
T TIGR03469 39 WPAVVAVVPARN--------------EADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTVV 104 (384)
T ss_pred CCCEEEEEecCC--------------cHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEe
Confidence 456888888853 346677788888754321 26777664 2332333 3332 23443
Q ss_pred eCCcc---cCCChHHHHHHHHhhc---cCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEE
Q 028257 115 MTSES---CRNGTERCNEALQKLE---KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFS 172 (211)
Q Consensus 115 ~~~~~---~~g~~~si~~al~~l~---~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~ 172 (211)
..++. ..|...++..|++... .+.|+++++++|. .++++.++++++.+++....+++
T Consensus 105 ~~~~~~~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~-~~~p~~l~~lv~~~~~~~~~~vs 167 (384)
T TIGR03469 105 SGQPLPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDADI-AHGPDNLARLVARARAEGLDLVS 167 (384)
T ss_pred cCCCCCCCCcchHHHHHHHHHHHhccCCCCCEEEEECCCC-CCChhHHHHHHHHHHhCCCCEEE
Confidence 32211 1233446777777763 1279999999999 67999999999988654333444
No 120
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=96.65 E-value=0.092 Score=43.65 Aligned_cols=113 Identities=13% Similarity=0.121 Sum_probs=64.5
Q ss_pred cCCCCCCcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHc----CCCCCeEEEEcC--cHHHHH----HHHHcC-
Q 028257 42 RSKNFRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKL----ATTLDHLVVATD--DEKIAE----CCQQFG- 110 (211)
Q Consensus 42 ~~~~~~m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~----~~~id~IVVvt~--~e~i~~----~~~~~~- 110 (211)
++...++++.+|||+-.... .|..+++.+.+ ...+ +|+|+-| .+...+ +.++++
T Consensus 3 ~~~~~~~~vsVvIp~yne~~--------------~l~~~l~~l~~~~~~~~~~-eiivvDdgS~D~t~~i~~~~~~~~~~ 67 (243)
T PLN02726 3 APGEGAMKYSIIVPTYNERL--------------NIALIVYLIFKALQDVKDF-EIIVVDDGSPDGTQDVVKQLQKVYGE 67 (243)
T ss_pred CCCCCCceEEEEEccCCchh--------------hHHHHHHHHHHHhccCCCe-EEEEEeCCCCCCHHHHHHHHHHhcCC
Confidence 34555678999999854433 23333333321 1112 6666653 222233 333333
Q ss_pred CeEeeC-CcccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEE
Q 028257 111 ADVIMT-SESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFS 172 (211)
Q Consensus 111 v~vi~~-~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~ 172 (211)
..+... ...-.|...++..|++.. +.|+++++++|.. .+++.+..+++.+.+ ..+.+++
T Consensus 68 ~~v~~~~~~~n~G~~~a~n~g~~~a--~g~~i~~lD~D~~-~~~~~l~~l~~~~~~~~~~~v~g 128 (243)
T PLN02726 68 DRILLRPRPGKLGLGTAYIHGLKHA--SGDFVVIMDADLS-HHPKYLPSFIKKQRETGADIVTG 128 (243)
T ss_pred CcEEEEecCCCCCHHHHHHHHHHHc--CCCEEEEEcCCCC-CCHHHHHHHHHHHHhcCCcEEEE
Confidence 223221 112234445677788876 5789999999995 799999999998854 4555544
No 121
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=96.58 E-value=0.042 Score=54.53 Aligned_cols=92 Identities=15% Similarity=0.125 Sum_probs=66.1
Q ss_pred hHHHHHHHHHcCCCC-C--eEEEEcC--cHHHHHHHHHcCCeEeeCCcccCCChHHHHHHHHhhccCCCEEEEEcCCCcC
Q 028257 76 MIQRTWERSKLATTL-D--HLVVATD--DEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPL 150 (211)
Q Consensus 76 Ll~~~i~~l~~~~~i-d--~IVVvt~--~e~i~~~~~~~~v~vi~~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pl 150 (211)
+++.+++.+.+...- + +|+|+-| .++..+++++.++.++.+++...+....+..|++.. +.|+++++|||. .
T Consensus 275 vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t~~la~~~~v~yI~R~~n~~gKAGnLN~aL~~a--~GEyIavlDAD~-i 351 (852)
T PRK11498 275 VVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQFAQEVGVKYIARPTHEHAKAGNINNALKYA--KGEFVAIFDCDH-V 351 (852)
T ss_pred HHHHHHHHHHhccCCCCceEEEEEeCCCChHHHHHHHHCCcEEEEeCCCCcchHHHHHHHHHhC--CCCEEEEECCCC-C
Confidence 567777776643322 1 5777654 577888888888887766543323345677888887 579999999999 6
Q ss_pred CCHHHHHHHHHHHHhCCCeE
Q 028257 151 IEPEIIDGVVKALQAAPDAV 170 (211)
Q Consensus 151 i~~~~i~~li~~~~~~~d~v 170 (211)
.+++.++.++..+.++++..
T Consensus 352 p~pdfL~~~V~~f~~dP~Vg 371 (852)
T PRK11498 352 PTRSFLQMTMGWFLKDKKLA 371 (852)
T ss_pred CChHHHHHHHHHHHhCCCeE
Confidence 89999999998876665543
No 122
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=96.53 E-value=0.073 Score=42.27 Aligned_cols=95 Identities=18% Similarity=0.296 Sum_probs=62.7
Q ss_pred hHHHHHHHHHcCCC-CCeEEEEcC---cHHHHH----HHHHcCCeEeeCCcccCCChHHHHHHHHhhccCCCEEEEEcCC
Q 028257 76 MIQRTWERSKLATT-LDHLVVATD---DEKIAE----CCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGD 147 (211)
Q Consensus 76 Ll~~~i~~l~~~~~-id~IVVvt~---~e~i~~----~~~~~~v~vi~~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D 147 (211)
.|+.+++.+.+... -.+++|+.| .+...+ +.+++++.++..++. .|...+...|+... +.|+++++++|
T Consensus 14 ~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~~~~~~i~~i~~~~n-~G~~~a~N~g~~~a--~gd~i~~lD~D 90 (201)
T cd04195 14 FLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFKRKLPLKVVPLEKN-RGLGKALNEGLKHC--TYDWVARMDTD 90 (201)
T ss_pred HHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHHHhcCCeEEEEcCcc-ccHHHHHHHHHHhc--CCCEEEEeCCc
Confidence 78888888886532 246666543 233333 333445555544322 35456677788876 57999999999
Q ss_pred CcCCCHHHHHHHHHHHHhCCCeEEEEe
Q 028257 148 EPLIEPEIIDGVVKALQAAPDAVFSTA 174 (211)
Q Consensus 148 ~Pli~~~~i~~li~~~~~~~d~vv~v~ 174 (211)
. .+.++.++.+++.+.++++..+...
T Consensus 91 d-~~~~~~l~~~~~~~~~~~~~~~~~~ 116 (201)
T cd04195 91 D-ISLPDRFEKQLDFIEKNPEIDIVGG 116 (201)
T ss_pred c-ccCcHHHHHHHHHHHhCCCeEEEcc
Confidence 9 7889999999999876655544433
No 123
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=96.46 E-value=0.14 Score=42.38 Aligned_cols=96 Identities=14% Similarity=0.162 Sum_probs=59.1
Q ss_pred CCeehHHHHHHHHHcCCCC---CeEEEEcC--cHHHHHHHHHcC----CeEeeCCc-ccCCChHHHHHHHHhhccCCCEE
Q 028257 72 LGKPMIQRTWERSKLATTL---DHLVVATD--DEKIAECCQQFG----ADVIMTSE-SCRNGTERCNEALQKLEKKYDIV 141 (211)
Q Consensus 72 ~GkpLl~~~i~~l~~~~~i---d~IVVvt~--~e~i~~~~~~~~----v~vi~~~~-~~~g~~~si~~al~~l~~~~d~v 141 (211)
+..-.|..+++.+.+...- -+|+|+.+ .+...++++++. .++...+. ...|...++..|++.. +.|++
T Consensus 11 Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~~~~~~~~i~~~~~~~~~G~~~a~n~g~~~a--~gd~i 88 (241)
T cd06427 11 KEAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARALRLPSIFRVVVVPPSQPRTKPKACNYALAFA--RGEYV 88 (241)
T ss_pred CcHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHhccCCCeeEEEecCCCCCchHHHHHHHHHhc--CCCEE
Confidence 3344567777777654221 14555543 344444554432 23433221 2234456777888876 57999
Q ss_pred EEEcCCCcCCCHHHHHHHHHHHHhC-CCeE
Q 028257 142 VNIQGDEPLIEPEIIDGVVKALQAA-PDAV 170 (211)
Q Consensus 142 lv~~~D~Pli~~~~i~~li~~~~~~-~d~v 170 (211)
+++++|. .+.++.+.++++.+.++ .+..
T Consensus 89 ~~~DaD~-~~~~~~l~~~~~~~~~~~~~v~ 117 (241)
T cd06427 89 VIYDAED-APDPDQLKKAVAAFARLDDKLA 117 (241)
T ss_pred EEEcCCC-CCChHHHHHHHHHHHhcCCCEE
Confidence 9999999 79999999999998654 4443
No 124
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=96.32 E-value=0.0092 Score=54.64 Aligned_cols=61 Identities=18% Similarity=0.227 Sum_probs=46.1
Q ss_pred CcEEEEEecCCCCCCCC---Ccccccc-CCeehHHHHHHHHHc----CC-CCCeEEEEcC---cHHHHHHHHHc
Q 028257 48 SRVVGIIPARFASSRFE---GKPLVNI-LGKPMIQRTWERSKL----AT-TLDHLVVATD---DEKIAECCQQF 109 (211)
Q Consensus 48 m~i~aIIlA~G~ssRlg---~K~ll~l-~GkpLl~~~i~~l~~----~~-~id~IVVvt~---~e~i~~~~~~~ 109 (211)
-++++|+||||.|+||| +|.+.++ .|+++++..++++.. .+ .+ .+++-++ +++..+++++|
T Consensus 55 ~kvavl~LaGGlGTrlG~~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~i-Pl~iMtS~~T~~~T~~~l~ky 127 (420)
T PF01704_consen 55 GKVAVLKLAGGLGTRLGCSGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDI-PLYIMTSFNTHEDTRKFLEKY 127 (420)
T ss_dssp TCEEEEEEEESBSGCCTESSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT--EEEEEEETTTHHHHHHHHHHG
T ss_pred CCEEEEEEcCcccCccCCCCCCcceecCCcccHHHHHHHHHHHHhccccccc-eEEEecCcccHHHHHHHHHHh
Confidence 47889999999999997 6999999 689999999988874 11 23 4555553 56777777654
No 125
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=96.28 E-value=0.11 Score=42.20 Aligned_cols=87 Identities=18% Similarity=0.240 Sum_probs=57.6
Q ss_pred CCe-ehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHH---HHcC-CeEeeCCcccCCChHHHHHHHHhhccCCCEEEEE
Q 028257 72 LGK-PMIQRTWERSKLATTLDHLVVATD--DEKIAECC---QQFG-ADVIMTSESCRNGTERCNEALQKLEKKYDIVVNI 144 (211)
Q Consensus 72 ~Gk-pLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~---~~~~-v~vi~~~~~~~g~~~si~~al~~l~~~~d~vlv~ 144 (211)
+.. ..+..+++.+.+.. -.+|+|+.+ .++..+.+ .... +.++. ....|...++..|++.. +.|+++++
T Consensus 10 ne~~~~l~~~l~sl~~q~-~~eiivvdd~s~d~~~~~l~~~~~~~~~~v~~--~~~~g~~~a~n~g~~~a--~~d~v~~l 84 (235)
T cd06434 10 DEDPDVFRECLRSILRQK-PLEIIVVTDGDDEPYLSILSQTVKYGGIFVIT--VPHPGKRRALAEGIRHV--TTDIVVLL 84 (235)
T ss_pred CCChHHHHHHHHHHHhCC-CCEEEEEeCCCChHHHHHHHhhccCCcEEEEe--cCCCChHHHHHHHHHHh--CCCEEEEE
Confidence 344 78888888888654 446766664 23333332 2222 22222 22335456677788876 58999999
Q ss_pred cCCCcCCCHHHHHHHHHHHH
Q 028257 145 QGDEPLIEPEIIDGVVKALQ 164 (211)
Q Consensus 145 ~~D~Pli~~~~i~~li~~~~ 164 (211)
++|. .+.++.++++++.+.
T Consensus 85 D~D~-~~~~~~l~~l~~~~~ 103 (235)
T cd06434 85 DSDT-VWPPNALPEMLKPFE 103 (235)
T ss_pred CCCc-eeChhHHHHHHHhcc
Confidence 9999 788999999999986
No 126
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=96.23 E-value=0.24 Score=39.22 Aligned_cols=93 Identities=22% Similarity=0.284 Sum_probs=57.7
Q ss_pred CCe-ehHHHHHHHHHcCCCC-CeEEEEcC---cHHHHHHHHHc-----CCeEeeCCcccCCChHHHHHHHHhhccCCCEE
Q 028257 72 LGK-PMIQRTWERSKLATTL-DHLVVATD---DEKIAECCQQF-----GADVIMTSESCRNGTERCNEALQKLEKKYDIV 141 (211)
Q Consensus 72 ~Gk-pLl~~~i~~l~~~~~i-d~IVVvt~---~e~i~~~~~~~-----~v~vi~~~~~~~g~~~si~~al~~l~~~~d~v 141 (211)
++. ..++.+++.+.+...- .+|+|+-+ ++....+.+.+ .+.++..+ ...|...++..|++.. ..|++
T Consensus 11 n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~a~n~g~~~a--~~d~i 87 (202)
T cd04184 11 NTPEKYLREAIESVRAQTYPNWELCIADDASTDPEVKRVLKKYAAQDPRIKVVFRE-ENGGISAATNSALELA--TGEFV 87 (202)
T ss_pred cCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHHHHHhcCCCEEEEEcc-cCCCHHHHHHHHHHhh--cCCEE
Confidence 445 6778888888754322 25666643 22333333321 23333332 2234446677788876 47999
Q ss_pred EEEcCCCcCCCHHHHHHHHHHHHhCCC
Q 028257 142 VNIQGDEPLIEPEIIDGVVKALQAAPD 168 (211)
Q Consensus 142 lv~~~D~Pli~~~~i~~li~~~~~~~d 168 (211)
+++++|. .++++.++.+++.+..+++
T Consensus 88 ~~ld~D~-~~~~~~l~~~~~~~~~~~~ 113 (202)
T cd04184 88 ALLDHDD-ELAPHALYEVVKALNEHPD 113 (202)
T ss_pred EEECCCC-cCChHHHHHHHHHHHhCCC
Confidence 9999999 7799999999999844333
No 127
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=96.07 E-value=0.16 Score=38.02 Aligned_cols=97 Identities=21% Similarity=0.274 Sum_probs=59.7
Q ss_pred CCeehHHHHHHHHHcCCC-CCeEEEEcC--cHHHHHHHHHcC----C-eEeeCCcccCCChHHHHHHHHhhccCCCEEEE
Q 028257 72 LGKPMIQRTWERSKLATT-LDHLVVATD--DEKIAECCQQFG----A-DVIMTSESCRNGTERCNEALQKLEKKYDIVVN 143 (211)
Q Consensus 72 ~GkpLl~~~i~~l~~~~~-id~IVVvt~--~e~i~~~~~~~~----v-~vi~~~~~~~g~~~si~~al~~l~~~~d~vlv 143 (211)
+....|..+++.+.+... ..+++|+-+ .+...+.+.++. . ..+.......|...+...|++.. ..+++++
T Consensus 7 n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~n~~~~~~--~~~~i~~ 84 (180)
T cd06423 7 NEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAALYIRRVLVVRDKENGGKAGALNAGLRHA--KGDIVVV 84 (180)
T ss_pred ChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhccccceEEEEEecccCCchHHHHHHHHhc--CCCEEEE
Confidence 445678888888876531 336666654 222333333322 1 12222223345556677888877 5899999
Q ss_pred EcCCCcCCCHHHHHHHHHHHHhCCCeEE
Q 028257 144 IQGDEPLIEPEIIDGVVKALQAAPDAVF 171 (211)
Q Consensus 144 ~~~D~Pli~~~~i~~li~~~~~~~d~vv 171 (211)
+++|. .+.++.+..++..+.++++..+
T Consensus 85 ~D~D~-~~~~~~l~~~~~~~~~~~~~~~ 111 (180)
T cd06423 85 LDADT-ILEPDALKRLVVPFFADPKVGA 111 (180)
T ss_pred ECCCC-CcChHHHHHHHHHhccCCCeee
Confidence 99999 7789999999777655444433
No 128
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=96.00 E-value=0.2 Score=43.02 Aligned_cols=73 Identities=15% Similarity=0.265 Sum_probs=48.1
Q ss_pred HHHHHHHHcCCe-EeeCCcc--cCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHH---HHHhCCCeEEEEe
Q 028257 101 KIAECCQQFGAD-VIMTSES--CRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVK---ALQAAPDAVFSTA 174 (211)
Q Consensus 101 ~i~~~~~~~~v~-vi~~~~~--~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~---~~~~~~d~vv~v~ 174 (211)
.+.++++..+.. ++..+.. .-+.....-.|++.. +.|+++++++|+ +++++.+..+++ .+.++++..+..+
T Consensus 51 ~l~~~~~~~~~~~~i~~~~~~~~f~~a~arN~g~~~A--~~d~l~flD~D~-i~~~~~i~~~~~~~~~l~~~~~~~~~~p 127 (281)
T PF10111_consen 51 ELKKLCEKNGFIRYIRHEDNGEPFSRAKARNIGAKYA--RGDYLIFLDADC-IPSPDFIEKLLNHVKKLDKNPNAFLVYP 127 (281)
T ss_pred HHHHHHhccCceEEEEcCCCCCCcCHHHHHHHHHHHc--CCCEEEEEcCCe-eeCHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 455666666655 3333211 123344455677766 589999999999 889999999999 5655666666655
Q ss_pred ee
Q 028257 175 VT 176 (211)
Q Consensus 175 ~~ 176 (211)
+.
T Consensus 128 ~~ 129 (281)
T PF10111_consen 128 CL 129 (281)
T ss_pred ee
Confidence 43
No 129
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=95.94 E-value=0.35 Score=43.19 Aligned_cols=100 Identities=15% Similarity=0.194 Sum_probs=61.1
Q ss_pred CcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCC-CeEEEEcC--cH----HHHHHHHHcC---CeEeeCC
Q 028257 48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTL-DHLVVATD--DE----KIAECCQQFG---ADVIMTS 117 (211)
Q Consensus 48 m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~i-d~IVVvt~--~e----~i~~~~~~~~---v~vi~~~ 117 (211)
+++++|||+.+. .+.|...++.+.+...- .+|+|+.+ ++ .++++.+++. +.++..+
T Consensus 41 p~VSViiP~~ne--------------e~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v~~~ 106 (373)
T TIGR03472 41 PPVSVLKPLHGD--------------EPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADFPDADIDLVIDA 106 (373)
T ss_pred CCeEEEEECCCC--------------ChhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEEECC
Confidence 458888888644 35566777777654321 36766543 12 2233333332 3334433
Q ss_pred cccCCC---hHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh
Q 028257 118 ESCRNG---TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 165 (211)
Q Consensus 118 ~~~~g~---~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~ 165 (211)
++ .|. ...+.++++.. +.|+++++|+|. .++++.++.++..+++
T Consensus 107 ~~-~G~~~K~~~l~~~~~~a--~ge~i~~~DaD~-~~~p~~L~~lv~~~~~ 153 (373)
T TIGR03472 107 RR-HGPNRKVSNLINMLPHA--RHDILVIADSDI-SVGPDYLRQVVAPLAD 153 (373)
T ss_pred CC-CCCChHHHHHHHHHHhc--cCCEEEEECCCC-CcChhHHHHHHHHhcC
Confidence 22 232 23455566655 589999999999 6799999999988853
No 130
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=95.93 E-value=0.18 Score=40.63 Aligned_cols=97 Identities=21% Similarity=0.250 Sum_probs=60.5
Q ss_pred CCeehHHHHHHHHHcCCC--CCeEEEEcC--cHHHHHHH----HHcC-CeEeeCCcccCCChHHHHHHHHhhccCCCEEE
Q 028257 72 LGKPMIQRTWERSKLATT--LDHLVVATD--DEKIAECC----QQFG-ADVIMTSESCRNGTERCNEALQKLEKKYDIVV 142 (211)
Q Consensus 72 ~GkpLl~~~i~~l~~~~~--id~IVVvt~--~e~i~~~~----~~~~-v~vi~~~~~~~g~~~si~~al~~l~~~~d~vl 142 (211)
++...|..+++.+.+... -.+|+|+-| .+...+++ +... +.++... .-.|...+...|++.. ..|+++
T Consensus 7 n~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~~~~~~i~~~~~~-~n~G~~~a~n~g~~~a--~gd~i~ 83 (224)
T cd06442 7 NERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELAKEYPRVRLIVRP-GKRGLGSAYIEGFKAA--RGDVIV 83 (224)
T ss_pred chhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHHHhCCceEEEecC-CCCChHHHHHHHHHHc--CCCEEE
Confidence 445667888888875421 236666654 23223333 3323 2333332 3334456677888887 469999
Q ss_pred EEcCCCcCCCHHHHHHHHHHH-HhCCCeEEE
Q 028257 143 NIQGDEPLIEPEIIDGVVKAL-QAAPDAVFS 172 (211)
Q Consensus 143 v~~~D~Pli~~~~i~~li~~~-~~~~d~vv~ 172 (211)
++++|. ..+++.+..+++.+ .++.+.+++
T Consensus 84 ~lD~D~-~~~~~~l~~l~~~~~~~~~~~v~g 113 (224)
T cd06442 84 VMDADL-SHPPEYIPELLEAQLEGGADLVIG 113 (224)
T ss_pred EEECCC-CCCHHHHHHHHHHHhcCCCCEEEE
Confidence 999998 56899999999985 445565554
No 131
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=95.92 E-value=0.037 Score=42.04 Aligned_cols=89 Identities=25% Similarity=0.281 Sum_probs=45.4
Q ss_pred HHHHHHcCCCCCeEEEEcCcH---HHHHHHHHcCCeEeeCCcccCCC-hHHHHHHHHhhccCCCEEEEEcCCCcCCCHHH
Q 028257 80 TWERSKLATTLDHLVVATDDE---KIAECCQQFGADVIMTSESCRNG-TERCNEALQKLEKKYDIVVNIQGDEPLIEPEI 155 (211)
Q Consensus 80 ~i~~l~~~~~id~IVVvt~~e---~i~~~~~~~~v~vi~~~~~~~g~-~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~ 155 (211)
|++++.+....+.++..++.. .........++.+.... .+. .+++.++++.+....+.++++-.|.|.++++.
T Consensus 1 tl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Q~---g~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~l~~~~ 77 (122)
T PF09837_consen 1 TLAALAQADGADVVLAYTPDGDHAAFRQLWLPSGFSFFPQQ---GGDLGERMANAFQQAARGYEPVVLIGSDCPDLTPDD 77 (122)
T ss_dssp -------TSSSEEEEEE----TTHHHHHHHH-TTSEEEE-----SSSHHHHHHHHHHHHHTT-SEEEEE-SS-TT--HHH
T ss_pred CccccccCCCcCEEEEEcCCccHHHHhccccCCCCEEeecC---CCCHHHHHHHHHHHHHcCCCcEEEEcCCCCCCCHHH
Confidence 456666665454444444322 22211223355555432 123 37888888887545789999999999999999
Q ss_pred HHHHHHHHHhCCCeEEE
Q 028257 156 IDGVVKALQAAPDAVFS 172 (211)
Q Consensus 156 i~~li~~~~~~~d~vv~ 172 (211)
|+.+.+++..+ |.+++
T Consensus 78 l~~A~~~L~~~-d~Vlg 93 (122)
T PF09837_consen 78 LEQAFEALQRH-DVVLG 93 (122)
T ss_dssp HHHHHHHTTT--SEEEE
T ss_pred HHHHHHHhccC-CEEEe
Confidence 99999998654 66655
No 132
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=95.91 E-value=0.16 Score=38.45 Aligned_cols=94 Identities=15% Similarity=0.156 Sum_probs=62.0
Q ss_pred CCeehHHHHHHHHHcCCC-CCeEEEEcC--cHHHHHHHHHcC--CeEeeCCcccCCChHHHHHHHHhhccCCCEEEEEcC
Q 028257 72 LGKPMIQRTWERSKLATT-LDHLVVATD--DEKIAECCQQFG--ADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQG 146 (211)
Q Consensus 72 ~GkpLl~~~i~~l~~~~~-id~IVVvt~--~e~i~~~~~~~~--v~vi~~~~~~~g~~~si~~al~~l~~~~d~vlv~~~ 146 (211)
+....+.++++.+.+... ..+++|+.+ .+...+.+.+.. +.++..+ ...|...+...+++.+ +.++++++++
T Consensus 7 ~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~~~~~~~~~~-~~~g~~~a~n~~~~~~--~~~~i~~~D~ 83 (166)
T cd04186 7 NSLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELFPEVRLIRNG-ENLGFGAGNNQGIREA--KGDYVLLLNP 83 (166)
T ss_pred CCHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhCCCeEEEecC-CCcChHHHhhHHHhhC--CCCEEEEECC
Confidence 456788999999986532 346766664 233344444433 3443332 2335556677788887 5899999999
Q ss_pred CCcCCCHHHHHHHHHHHHhCCCe
Q 028257 147 DEPLIEPEIIDGVVKALQAAPDA 169 (211)
Q Consensus 147 D~Pli~~~~i~~li~~~~~~~d~ 169 (211)
|. .++++.+..+++.+.+.++.
T Consensus 84 D~-~~~~~~l~~~~~~~~~~~~~ 105 (166)
T cd04186 84 DT-VVEPGALLELLDAAEQDPDV 105 (166)
T ss_pred Cc-EECccHHHHHHHHHHhCCCc
Confidence 99 67899999999987655443
No 133
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=95.87 E-value=0.24 Score=38.53 Aligned_cols=96 Identities=22% Similarity=0.224 Sum_probs=59.7
Q ss_pred eehHHHHHHHHHcCC---CCCeEEEEcC--cHHHHHHHH----HcC-CeEeeCCcccCCChHHHHHHHHhhccCCCEEEE
Q 028257 74 KPMIQRTWERSKLAT---TLDHLVVATD--DEKIAECCQ----QFG-ADVIMTSESCRNGTERCNEALQKLEKKYDIVVN 143 (211)
Q Consensus 74 kpLl~~~i~~l~~~~---~id~IVVvt~--~e~i~~~~~----~~~-v~vi~~~~~~~g~~~si~~al~~l~~~~d~vlv 143 (211)
...+..+++.+.+.. ...+|+|+-+ .+...+.++ +.. ..++..+ .-.|...+...+++.. ..|++++
T Consensus 9 ~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~~~~~~~~~~~~~-~n~G~~~a~n~g~~~a--~gd~i~~ 85 (185)
T cd04179 9 EENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELAARVPRVRVIRLS-RNFGKGAAVRAGFKAA--RGDIVVT 85 (185)
T ss_pred HhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHHHhCCCeEEEEcc-CCCCccHHHHHHHHHh--cCCEEEE
Confidence 355667777776552 2557777764 233333333 222 1223332 3345566777888877 4699999
Q ss_pred EcCCCcCCCHHHHHHHHHHH-HhCCCeEEEE
Q 028257 144 IQGDEPLIEPEIIDGVVKAL-QAAPDAVFST 173 (211)
Q Consensus 144 ~~~D~Pli~~~~i~~li~~~-~~~~d~vv~v 173 (211)
+++|. .++++.++++++.+ ....+.+++.
T Consensus 86 lD~D~-~~~~~~l~~l~~~~~~~~~~~v~g~ 115 (185)
T cd04179 86 MDADL-QHPPEDIPKLLEKLLEGGADVVIGS 115 (185)
T ss_pred EeCCC-CCCHHHHHHHHHHHhccCCcEEEEE
Confidence 99999 56999999999985 4445555544
No 134
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=95.82 E-value=0.25 Score=40.33 Aligned_cols=88 Identities=19% Similarity=0.317 Sum_probs=58.1
Q ss_pred ehHHHHHHHHHcCCC-CCeEEEEcC---cH----HHHHHHHHcCCeE--eeCCcccCCC-hHHHHHHHHhhccCCCEEEE
Q 028257 75 PMIQRTWERSKLATT-LDHLVVATD---DE----KIAECCQQFGADV--IMTSESCRNG-TERCNEALQKLEKKYDIVVN 143 (211)
Q Consensus 75 pLl~~~i~~l~~~~~-id~IVVvt~---~e----~i~~~~~~~~v~v--i~~~~~~~g~-~~si~~al~~l~~~~d~vlv 143 (211)
.+|..+++.+.+... -.+|+|+-+ ++ .+++++++++.++ +... ...|. ..++..|++.+..+.|++++
T Consensus 12 ~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~~~~i~~i~~~-~~~G~~~~a~n~g~~~a~~~~d~i~~ 90 (236)
T cd06435 12 EMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVE-PLPGAKAGALNYALERTAPDAEIIAV 90 (236)
T ss_pred HHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHHhCCcEEEEEcC-CCCCCchHHHHHHHHhcCCCCCEEEE
Confidence 378898998886532 236766654 12 2334555544333 3332 22343 45677788876434799999
Q ss_pred EcCCCcCCCHHHHHHHHHHHH
Q 028257 144 IQGDEPLIEPEIIDGVVKALQ 164 (211)
Q Consensus 144 ~~~D~Pli~~~~i~~li~~~~ 164 (211)
+++|. .++++.+..+++.+.
T Consensus 91 lD~D~-~~~~~~l~~l~~~~~ 110 (236)
T cd06435 91 IDADY-QVEPDWLKRLVPIFD 110 (236)
T ss_pred EcCCC-CcCHHHHHHHHHHhc
Confidence 99998 899999999999885
No 135
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=95.68 E-value=0.47 Score=43.48 Aligned_cols=92 Identities=15% Similarity=0.133 Sum_probs=58.0
Q ss_pred eehHHHHHHHHHcCCC-CCeEEEEcC--cH----HHHHHHHHc-CCeEeeCCcccCCChHHHHHHHHhhccCCCEEEEEc
Q 028257 74 KPMIQRTWERSKLATT-LDHLVVATD--DE----KIAECCQQF-GADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQ 145 (211)
Q Consensus 74 kpLl~~~i~~l~~~~~-id~IVVvt~--~e----~i~~~~~~~-~v~vi~~~~~~~g~~~si~~al~~l~~~~d~vlv~~ 145 (211)
...+..+++.+.+... -.+|+|+.| ++ .+++..+++ .+.++... .-.|...++..|++.. +.|+++++|
T Consensus 87 ~~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~~~~~~~v~vv~~~-~n~Gka~AlN~gl~~a--~~d~iv~lD 163 (444)
T PRK14583 87 GLNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDALLAEDPRLRVIHLA-HNQGKAIALRMGAAAA--RSEYLVCID 163 (444)
T ss_pred HHHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHHHHhCCCEEEEEeC-CCCCHHHHHHHHHHhC--CCCEEEEEC
Confidence 3556777888765422 136777654 22 233333333 34444432 2234445677777765 589999999
Q ss_pred CCCcCCCHHHHHHHHHHHHhCCCe
Q 028257 146 GDEPLIEPEIIDGVVKALQAAPDA 169 (211)
Q Consensus 146 ~D~Pli~~~~i~~li~~~~~~~d~ 169 (211)
+|. ..+++.+..+++.+.++++.
T Consensus 164 AD~-~~~~d~L~~lv~~~~~~~~~ 186 (444)
T PRK14583 164 GDA-LLDKNAVPYLVAPLIANPRT 186 (444)
T ss_pred CCC-CcCHHHHHHHHHHHHhCCCe
Confidence 999 78999999999988655443
No 136
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=95.60 E-value=0.013 Score=53.83 Aligned_cols=39 Identities=21% Similarity=0.220 Sum_probs=34.9
Q ss_pred CcEEEEEecCCCCCCCC---CccccccC-CeehHHHHHHHHHc
Q 028257 48 SRVVGIIPARFASSRFE---GKPLVNIL-GKPMIQRTWERSKL 86 (211)
Q Consensus 48 m~i~aIIlA~G~ssRlg---~K~ll~l~-GkpLl~~~i~~l~~ 86 (211)
.++++|++|||.|+||| +|.+.++. |+++++...++++.
T Consensus 104 ~klAvl~LaGGqGtrlG~~gPKgl~~V~~gks~~dl~~~qIk~ 146 (472)
T COG4284 104 GKLAVLKLAGGQGTRLGCDGPKGLFEVKDGKSLFDLQAEQIKY 146 (472)
T ss_pred CceEEEEecCCcccccccCCCceeEEecCCCcHHHHHHHHHHH
Confidence 46889999999999997 69999997 99999999988874
No 137
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=95.51 E-value=0.57 Score=37.38 Aligned_cols=86 Identities=14% Similarity=0.239 Sum_probs=50.2
Q ss_pred ehHHHHHHHHHcCCC-CCeEEEEcC--cHH----HHHHHHHcC-C--eEeeCCcccCCC---hHHHHHHHHhhccCCCEE
Q 028257 75 PMIQRTWERSKLATT-LDHLVVATD--DEK----IAECCQQFG-A--DVIMTSESCRNG---TERCNEALQKLEKKYDIV 141 (211)
Q Consensus 75 pLl~~~i~~l~~~~~-id~IVVvt~--~e~----i~~~~~~~~-v--~vi~~~~~~~g~---~~si~~al~~l~~~~d~v 141 (211)
..|...|+.+.+... --+|+|+.+ .+. ++++..++. . .++..+.. .|. ...+..|++.. +.|++
T Consensus 14 ~~l~~~L~sl~~q~~~~~eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~n~g~~~a--~~d~i 90 (196)
T cd02520 14 PNLYENLESFFQQDYPKYEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGGEK-VGINPKVNNLIKGYEEA--RYDIL 90 (196)
T ss_pred ccHHHHHHHHHhccCCCeEEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEecCCc-CCCCHhHHHHHHHHHhC--CCCEE
Confidence 446666777764321 136666654 222 233333332 2 23333222 132 22355677765 57999
Q ss_pred EEEcCCCcCCCHHHHHHHHHHHH
Q 028257 142 VNIQGDEPLIEPEIIDGVVKALQ 164 (211)
Q Consensus 142 lv~~~D~Pli~~~~i~~li~~~~ 164 (211)
+++++|. .++++.+..+++.+.
T Consensus 91 ~~~D~D~-~~~~~~l~~l~~~~~ 112 (196)
T cd02520 91 VISDSDI-SVPPDYLRRMVAPLM 112 (196)
T ss_pred EEECCCc-eEChhHHHHHHHHhh
Confidence 9999998 679999999999874
No 138
>PRK10073 putative glycosyl transferase; Provisional
Probab=95.51 E-value=0.46 Score=41.85 Aligned_cols=105 Identities=11% Similarity=0.115 Sum_probs=65.6
Q ss_pred cEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCC-CeEEEEcC--cHH----HHHHHHHc-CCeEeeCCccc
Q 028257 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTL-DHLVVATD--DEK----IAECCQQF-GADVIMTSESC 120 (211)
Q Consensus 49 ~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~i-d~IVVvt~--~e~----i~~~~~~~-~v~vi~~~~~~ 120 (211)
.+.+|||+ ++....|..+++.+.+...- -+|+|+-| .+. +++++++. .+.++.. .-
T Consensus 7 ~vSVIIP~--------------yN~~~~L~~~l~Sl~~Qt~~~~EIIiVdDgStD~t~~i~~~~~~~~~~i~vi~~--~n 70 (328)
T PRK10073 7 KLSIIIPL--------------YNAGKDFRAFMESLIAQTWTALEIIIVNDGSTDNSVEIAKHYAENYPHVRLLHQ--AN 70 (328)
T ss_pred eEEEEEec--------------cCCHHHHHHHHHHHHhCCCCCeEEEEEeCCCCccHHHHHHHHHhhCCCEEEEEC--CC
Confidence 46677776 34456788888888764321 25666653 222 23333332 2343332 22
Q ss_pred CCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEE
Q 028257 121 RNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFS 172 (211)
Q Consensus 121 ~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~ 172 (211)
.|...+...|++.. ..|+++++++|. ++.++.++.+++.+.+ +.|.+++
T Consensus 71 ~G~~~arN~gl~~a--~g~yi~flD~DD-~~~p~~l~~l~~~~~~~~~dvv~~ 120 (328)
T PRK10073 71 AGVSVARNTGLAVA--TGKYVAFPDADD-VVYPTMYETLMTMALEDDLDVAQC 120 (328)
T ss_pred CChHHHHHHHHHhC--CCCEEEEECCCC-ccChhHHHHHHHHHHhCCCCEEEE
Confidence 34445667788877 579999999999 7889999999988754 4455544
No 139
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=95.47 E-value=0.26 Score=39.74 Aligned_cols=98 Identities=13% Similarity=0.104 Sum_probs=59.7
Q ss_pred CCeehHHHHHHHHHcCC-----CCCeEEEEcC--cHH----HHHHHHHcCC--eEeeCCcccCCChHHHHHHHHhhccCC
Q 028257 72 LGKPMIQRTWERSKLAT-----TLDHLVVATD--DEK----IAECCQQFGA--DVIMTSESCRNGTERCNEALQKLEKKY 138 (211)
Q Consensus 72 ~GkpLl~~~i~~l~~~~-----~id~IVVvt~--~e~----i~~~~~~~~v--~vi~~~~~~~g~~~si~~al~~l~~~~ 138 (211)
+....|..+++.+.+.. .-.+|+|+-| .+. ++++.++++. .++..+ .-.|...++..|++.. ..
T Consensus 7 N~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~~~~~~~~i~~i~~~-~n~G~~~a~~~g~~~a--~g 83 (211)
T cd04188 7 NEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLARKNPALIRVLTLP-KNRGKGGAVRAGMLAA--RG 83 (211)
T ss_pred ChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHHHHhCCCcEEEEEcc-cCCCcHHHHHHHHHHh--cC
Confidence 44455666666665421 1236666653 222 3333334443 333332 2235556778888887 47
Q ss_pred CEEEEEcCCCcCCCHHHHHHHHHHHH-hCCCeEEEE
Q 028257 139 DIVVNIQGDEPLIEPEIIDGVVKALQ-AAPDAVFST 173 (211)
Q Consensus 139 d~vlv~~~D~Pli~~~~i~~li~~~~-~~~d~vv~v 173 (211)
|+++++++|. ..+++.+..+++.+. ...+.+++.
T Consensus 84 d~i~~ld~D~-~~~~~~l~~l~~~~~~~~~~~v~g~ 118 (211)
T cd04188 84 DYILFADADL-ATPFEELEKLEEALKTSGYDIAIGS 118 (211)
T ss_pred CEEEEEeCCC-CCCHHHHHHHHHHHhccCCcEEEEE
Confidence 9999999999 689999999999854 445555543
No 140
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=95.44 E-value=0.24 Score=42.57 Aligned_cols=97 Identities=10% Similarity=0.109 Sum_probs=61.7
Q ss_pred CCe-ehHHHHHHHHHcCCC---CCeEEEEcC--cHHHHHHH-----HHc--CCeEeeCCcccCCChHHHHHHHHhhccCC
Q 028257 72 LGK-PMIQRTWERSKLATT---LDHLVVATD--DEKIAECC-----QQF--GADVIMTSESCRNGTERCNEALQKLEKKY 138 (211)
Q Consensus 72 ~Gk-pLl~~~i~~l~~~~~---id~IVVvt~--~e~i~~~~-----~~~--~v~vi~~~~~~~g~~~si~~al~~l~~~~ 138 (211)
+.. ..|..+++.+.+... ..+||||-| .+...+.. ... .++++..+. -.|-..+...|++.. ..
T Consensus 8 N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~~~~~v~vi~~~~-n~G~~~a~N~g~~~A--~g 84 (299)
T cd02510 8 NEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKKYLPKVKVLRLKK-REGLIRARIAGARAA--TG 84 (299)
T ss_pred cCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHhhcCCcEEEEEcCC-CCCHHHHHHHHHHHc--cC
Confidence 344 688888888875422 137777764 12222221 222 345554432 234445667788876 57
Q ss_pred CEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEE
Q 028257 139 DIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFS 172 (211)
Q Consensus 139 d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~ 172 (211)
|+++++++|. .++++.++.+++.+.+++..+++
T Consensus 85 d~i~fLD~D~-~~~~~wL~~ll~~l~~~~~~~v~ 117 (299)
T cd02510 85 DVLVFLDSHC-EVNVGWLEPLLARIAENRKTVVC 117 (299)
T ss_pred CEEEEEeCCc-ccCccHHHHHHHHHHhCCCeEEE
Confidence 9999999999 56999999999999776665544
No 141
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=95.42 E-value=0.55 Score=36.67 Aligned_cols=51 Identities=18% Similarity=0.246 Sum_probs=39.4
Q ss_pred CCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEe
Q 028257 121 RNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTA 174 (211)
Q Consensus 121 ~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~ 174 (211)
.|...++..|++.. ..|+++++++|.. .+++.+..+++.+.++.+.+++..
T Consensus 66 ~G~~~a~n~g~~~a--~~d~i~~~D~D~~-~~~~~l~~l~~~~~~~~~~v~g~~ 116 (181)
T cd04187 66 FGQQAALLAGLDHA--RGDAVITMDADLQ-DPPELIPEMLAKWEEGYDVVYGVR 116 (181)
T ss_pred CCcHHHHHHHHHhc--CCCEEEEEeCCCC-CCHHHHHHHHHHHhCCCcEEEEEe
Confidence 45566777888877 4699999999995 689999999998765566655543
No 142
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=95.38 E-value=0.5 Score=41.78 Aligned_cols=41 Identities=5% Similarity=0.072 Sum_probs=33.0
Q ss_pred CCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHH
Q 028257 121 RNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ 164 (211)
Q Consensus 121 ~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~ 164 (211)
.|...++..|++.. ..|+++++++|. ..+++.+..+++.+.
T Consensus 148 ~G~~~A~~~Gi~~a--~gd~I~~~DaD~-~~~~~~l~~l~~~l~ 188 (333)
T PTZ00260 148 KGKGGAVRIGMLAS--RGKYILMVDADG-ATDIDDFDKLEDIML 188 (333)
T ss_pred CChHHHHHHHHHHc--cCCEEEEEeCCC-CCCHHHHHHHHHHHH
Confidence 35556777888876 579999999998 578889999988875
No 143
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=95.33 E-value=0.29 Score=38.23 Aligned_cols=89 Identities=12% Similarity=0.161 Sum_probs=55.8
Q ss_pred CCeehHHHHHHHHHcCCCCC--eEEEEcC--cHHHHHHHHHcCC--eEeeCCcccCCChHHHHHHHHhhccCCCEEEEEc
Q 028257 72 LGKPMIQRTWERSKLATTLD--HLVVATD--DEKIAECCQQFGA--DVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQ 145 (211)
Q Consensus 72 ~GkpLl~~~i~~l~~~~~id--~IVVvt~--~e~i~~~~~~~~v--~vi~~~~~~~g~~~si~~al~~l~~~~d~vlv~~ 145 (211)
++...++.+++.+.+.. .. +|+|+-+ .+...++++++.. ..+... ...|...++..|++.. +.|++++++
T Consensus 8 n~~~~l~~~l~sl~~q~-~~~~evivvDd~s~d~~~~~~~~~~~~~~~~~~~-~~~g~~~a~n~~~~~a--~~~~v~~ld 83 (202)
T cd06433 8 NQAETLEETIDSVLSQT-YPNIEYIVIDGGSTDGTVDIIKKYEDKITYWISE-PDKGIYDAMNKGIALA--TGDIIGFLN 83 (202)
T ss_pred chHHHHHHHHHHHHhCC-CCCceEEEEeCCCCccHHHHHHHhHhhcEEEEec-CCcCHHHHHHHHHHHc--CCCEEEEeC
Confidence 45677888888887542 33 5666643 3334444444332 223322 2234456677788876 579999999
Q ss_pred CCCcCCCHHHHHHHHHHHHh
Q 028257 146 GDEPLIEPEIIDGVVKALQA 165 (211)
Q Consensus 146 ~D~Pli~~~~i~~li~~~~~ 165 (211)
+|. .+.++.+..++..+..
T Consensus 84 ~D~-~~~~~~~~~~~~~~~~ 102 (202)
T cd06433 84 SDD-TLLPGALLAVVAAFAE 102 (202)
T ss_pred CCc-ccCchHHHHHHHHHHh
Confidence 999 6777888888755543
No 144
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=95.33 E-value=0.54 Score=38.41 Aligned_cols=89 Identities=13% Similarity=0.162 Sum_probs=52.1
Q ss_pred CCeehHHHHHHHHHcCCCCC---eEEEEcC-cHH----HHHHHHH---cCCeE--eeCCcccCCC-hHHHHHHHHhhccC
Q 028257 72 LGKPMIQRTWERSKLATTLD---HLVVATD-DEK----IAECCQQ---FGADV--IMTSESCRNG-TERCNEALQKLEKK 137 (211)
Q Consensus 72 ~GkpLl~~~i~~l~~~~~id---~IVVvt~-~e~----i~~~~~~---~~v~v--i~~~~~~~g~-~~si~~al~~l~~~ 137 (211)
+....|..+|+.+.+..... +|+|+-+ .+. +++...+ .+.++ +...+ -.|. ..++..|++.. +
T Consensus 11 Ne~~~l~~~L~sl~~q~~~~~~~eIiVvD~s~D~t~~~~~~~~~~~~~~~~~i~~~~~~~-~~G~k~~a~n~g~~~a--~ 87 (232)
T cd06437 11 NEKYVVERLIEAACALDYPKDRLEIQVLDDSTDETVRLAREIVEEYAAQGVNIKHVRRAD-RTGYKAGALAEGMKVA--K 87 (232)
T ss_pred CcHHHHHHHHHHHHhcCCCccceEEEEEECCCCcHHHHHHHHHHHHhhcCCceEEEECCC-CCCCchHHHHHHHHhC--C
Confidence 44466788888887543221 4545433 222 2222222 13333 22222 2343 44567788876 5
Q ss_pred CCEEEEEcCCCcCCCHHHHHHHHHHHH
Q 028257 138 YDIVVNIQGDEPLIEPEIIDGVVKALQ 164 (211)
Q Consensus 138 ~d~vlv~~~D~Pli~~~~i~~li~~~~ 164 (211)
.|+++++++|. .+.++.++.+...+.
T Consensus 88 ~~~i~~~DaD~-~~~~~~l~~~~~~~~ 113 (232)
T cd06437 88 GEYVAIFDADF-VPPPDFLQKTPPYFA 113 (232)
T ss_pred CCEEEEEcCCC-CCChHHHHHhhhhhc
Confidence 89999999999 679999999666553
No 145
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=95.30 E-value=0.61 Score=37.76 Aligned_cols=102 Identities=18% Similarity=0.178 Sum_probs=61.8
Q ss_pred cCCeehHHHHHHHHHcCCCC--CeEEEEcC--cH----HHHHHHHHc---CCeEeeCCc---ccCCChHHHHHHHHhhcc
Q 028257 71 ILGKPMIQRTWERSKLATTL--DHLVVATD--DE----KIAECCQQF---GADVIMTSE---SCRNGTERCNEALQKLEK 136 (211)
Q Consensus 71 l~GkpLl~~~i~~l~~~~~i--d~IVVvt~--~e----~i~~~~~~~---~v~vi~~~~---~~~g~~~si~~al~~l~~ 136 (211)
+++...|+.+++.+.+...- -+|+|+-+ .+ .+.++..++ ++.++.... ...|...+...|++..
T Consensus 6 yn~~~~l~~~l~sl~~q~~~~~~eiiVvDd~S~d~t~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~a~N~g~~~a-- 83 (219)
T cd06913 6 HNGEQWLDECLESVLQQDFEGTLELSVFNDASTDKSAEIIEKWRKKLEDSGVIVLVGSHNSPSPKGVGYAKNQAIAQS-- 83 (219)
T ss_pred cCcHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCccHHHHHHHHHHhCcccCeEEEEecccCCCCccHHHHHHHHHHhc--
Confidence 35667888888888764322 26666654 12 233333322 233333221 1123334556677765
Q ss_pred CCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEee
Q 028257 137 KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAV 175 (211)
Q Consensus 137 ~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~ 175 (211)
..|+++++++|. +..++.+..++..+.++++.+++...
T Consensus 84 ~gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~~~~v~~~~ 121 (219)
T cd06913 84 SGRYLCFLDSDD-VMMPQRIRLQYEAALQHPNSIIGCQV 121 (219)
T ss_pred CCCEEEEECCCc-cCChhHHHHHHHHHHhCCCcEEEEEE
Confidence 579999999998 67888899888887666666655443
No 146
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=95.20 E-value=0.37 Score=39.23 Aligned_cols=89 Identities=17% Similarity=0.230 Sum_probs=56.3
Q ss_pred CeehHHHHHHHHHcCCC---CCeEEEEcC--cHHHHHHHHHcC-----CeEeeCCcccCCChHHHHHHHHhhccCCCEEE
Q 028257 73 GKPMIQRTWERSKLATT---LDHLVVATD--DEKIAECCQQFG-----ADVIMTSESCRNGTERCNEALQKLEKKYDIVV 142 (211)
Q Consensus 73 GkpLl~~~i~~l~~~~~---id~IVVvt~--~e~i~~~~~~~~-----v~vi~~~~~~~g~~~si~~al~~l~~~~d~vl 142 (211)
....+..+++.+.+... --+|+|+-+ .++..+.++.+. +.++..+ ..+...++..|++.. +.|+++
T Consensus 11 ~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~~~~~v~~i~~~--~~~~~~a~N~g~~~a--~~d~v~ 86 (249)
T cd02525 11 EEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAAKDPRIRLIDNP--KRIQSAGLNIGIRNS--RGDIII 86 (249)
T ss_pred chhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHhcCCeEEEEeCC--CCCchHHHHHHHHHh--CCCEEE
Confidence 34567778888875432 126666653 233334333322 3334332 224445677788876 589999
Q ss_pred EEcCCCcCCCHHHHHHHHHHHHhC
Q 028257 143 NIQGDEPLIEPEIIDGVVKALQAA 166 (211)
Q Consensus 143 v~~~D~Pli~~~~i~~li~~~~~~ 166 (211)
++++|. .++++.+..+++.+.+.
T Consensus 87 ~lD~D~-~~~~~~l~~~~~~~~~~ 109 (249)
T cd02525 87 RVDAHA-VYPKDYILELVEALKRT 109 (249)
T ss_pred EECCCc-cCCHHHHHHHHHHHhcC
Confidence 999999 78999999999877543
No 147
>PRK10018 putative glycosyl transferase; Provisional
Probab=94.92 E-value=0.93 Score=39.15 Aligned_cols=90 Identities=11% Similarity=0.117 Sum_probs=56.4
Q ss_pred CCeehHHHHHHHHHcCCCC-CeEEEEcC--c--HHHHHHHHHcC---CeEeeCCcccCCChHHHHHHHHhhccCCCEEEE
Q 028257 72 LGKPMIQRTWERSKLATTL-DHLVVATD--D--EKIAECCQQFG---ADVIMTSESCRNGTERCNEALQKLEKKYDIVVN 143 (211)
Q Consensus 72 ~GkpLl~~~i~~l~~~~~i-d~IVVvt~--~--e~i~~~~~~~~---v~vi~~~~~~~g~~~si~~al~~l~~~~d~vlv 143 (211)
+....+..+|+.+.+...- -+++|+-| . +.+.++++.+. +.++..+ .-.|...+...|++.. ..+++++
T Consensus 15 N~~~~l~~~l~Svl~Qt~~~~EiIVVDDgS~~~~~~~~~~~~~~~~ri~~i~~~-~n~G~~~a~N~gi~~a--~g~~I~~ 91 (279)
T PRK10018 15 NRQQLAIRAIKSVLRQDYSNWEMIIVDDCSTSWEQLQQYVTALNDPRITYIHND-INSGACAVRNQAIMLA--QGEYITG 91 (279)
T ss_pred CCHHHHHHHHHHHHhCCCCCeEEEEEECCCCCHHHHHHHHHHcCCCCEEEEECC-CCCCHHHHHHHHHHHc--CCCEEEE
Confidence 4455677888877654322 25666543 1 34555555432 3333332 2234445566788876 5899999
Q ss_pred EcCCCcCCCHHHHHHHHHHHHh
Q 028257 144 IQGDEPLIEPEIIDGVVKALQA 165 (211)
Q Consensus 144 ~~~D~Pli~~~~i~~li~~~~~ 165 (211)
+++|. ...++.+..+++.+.+
T Consensus 92 lDaDD-~~~p~~l~~~~~~~~~ 112 (279)
T PRK10018 92 IDDDD-EWTPNRLSVFLAHKQQ 112 (279)
T ss_pred ECCCC-CCCccHHHHHHHHHHh
Confidence 99999 6778889999887754
No 148
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=94.90 E-value=0.52 Score=42.29 Aligned_cols=105 Identities=24% Similarity=0.361 Sum_probs=70.7
Q ss_pred CcEEEEEecCCCCCCCCCccccccCCee-hHHHHHHHHHcCCCCC-eEEEEcC--cHHHHHHHHHcC------CeEeeCC
Q 028257 48 SRVVGIIPARFASSRFEGKPLVNILGKP-MIQRTWERSKLATTLD-HLVVATD--DEKIAECCQQFG------ADVIMTS 117 (211)
Q Consensus 48 m~i~aIIlA~G~ssRlg~K~ll~l~Gkp-Ll~~~i~~l~~~~~id-~IVVvt~--~e~i~~~~~~~~------v~vi~~~ 117 (211)
+++..+||+-++ .+ .++.+++.+.+...-+ +|+|+.| .|+..+++++.+ +.+...+
T Consensus 54 p~vsviiP~ynE--------------~~~~~~~~l~s~~~~dyp~~evivv~d~~~d~~~~~~~~~~~~~~~~~~~~~~~ 119 (439)
T COG1215 54 PKVSVIIPAYNE--------------EPEVLEETLESLLSQDYPRYEVIVVDDGSTDETYEILEELGAEYGPNFRVIYPE 119 (439)
T ss_pred CceEEEEecCCC--------------chhhHHHHHHHHHhCCCCCceEEEECCCCChhHHHHHHHHHhhcCcceEEEecc
Confidence 567777777544 34 8999999998765332 7777775 455555554432 2222111
Q ss_pred cccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCe
Q 028257 118 ESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDA 169 (211)
Q Consensus 118 ~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~ 169 (211)
....|....+..|++.. +.|.++++|+|. ...++.+.+++..+......
T Consensus 120 ~~~~gK~~al~~~l~~~--~~d~V~~~DaD~-~~~~d~l~~~~~~f~~~~~~ 168 (439)
T COG1215 120 KKNGGKAGALNNGLKRA--KGDVVVILDADT-VPEPDALRELVSPFEDPPVG 168 (439)
T ss_pred ccCccchHHHHHHHhhc--CCCEEEEEcCCC-CCChhHHHHHHhhhcCCCee
Confidence 12234456777888876 489999999999 78999999999999754433
No 149
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.86 E-value=0.72 Score=36.98 Aligned_cols=93 Identities=11% Similarity=0.090 Sum_probs=55.3
Q ss_pred CCeehHHHHHHHHHcCCCC---CeEEEEcC--cHHHHHHHH---H-cC--CeEeeCCccc-CCChHHHHHHHHhhccCCC
Q 028257 72 LGKPMIQRTWERSKLATTL---DHLVVATD--DEKIAECCQ---Q-FG--ADVIMTSESC-RNGTERCNEALQKLEKKYD 139 (211)
Q Consensus 72 ~GkpLl~~~i~~l~~~~~i---d~IVVvt~--~e~i~~~~~---~-~~--v~vi~~~~~~-~g~~~si~~al~~l~~~~d 139 (211)
+....|+.+|+.+.....- -+|+|+-+ .+...++++ . .+ +.++..+... .|...++..|++.. ..|
T Consensus 7 n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~v~~~~~~~~~~~g~~~a~n~g~~~~--~~d 84 (229)
T cd04192 7 NEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEFAAAKPNFQLKILNNSRVSISGKKNALTTAIKAA--KGD 84 (229)
T ss_pred CcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHHHHHhCCCcceEEeeccCcccchhHHHHHHHHHHh--cCC
Confidence 4456788888888654322 25666654 222222221 1 12 2333322111 22234566677765 479
Q ss_pred EEEEEcCCCcCCCHHHHHHHHHHHHhCC
Q 028257 140 IVVNIQGDEPLIEPEIIDGVVKALQAAP 167 (211)
Q Consensus 140 ~vlv~~~D~Pli~~~~i~~li~~~~~~~ 167 (211)
+++++++|. .+.++.++.+++.+..+.
T Consensus 85 ~i~~~D~D~-~~~~~~l~~l~~~~~~~~ 111 (229)
T cd04192 85 WIVTTDADC-VVPSNWLLTFVAFIQKEQ 111 (229)
T ss_pred EEEEECCCc-ccCHHHHHHHHHHhhcCC
Confidence 999999999 789999999999875443
No 150
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=94.70 E-value=0.84 Score=39.52 Aligned_cols=103 Identities=17% Similarity=0.200 Sum_probs=64.0
Q ss_pred cCCeehHHHHHHHHHcCCCCCeEEEEcC---cHHHHHHHHHc---CCeEeeCCcccCCChHHHHHHHHhhccC-CCEEEE
Q 028257 71 ILGKPMIQRTWERSKLATTLDHLVVATD---DEKIAECCQQF---GADVIMTSESCRNGTERCNEALQKLEKK-YDIVVN 143 (211)
Q Consensus 71 l~GkpLl~~~i~~l~~~~~id~IVVvt~---~e~i~~~~~~~---~v~vi~~~~~~~g~~~si~~al~~l~~~-~d~vlv 143 (211)
++...-+...++.+.+....+..+|+++ .+...+..+.. .+.++..++. .|...+...+++....+ .+++++
T Consensus 12 yn~~~~l~~~l~~l~~~~~~~~~iv~vDn~s~d~~~~~~~~~~~~~v~~i~~~~N-lG~agg~n~g~~~a~~~~~~~~l~ 90 (305)
T COG1216 12 YNRGEDLVECLASLAAQTYPDDVIVVVDNGSTDGSLEALKARFFPNVRLIENGEN-LGFAGGFNRGIKYALAKGDDYVLL 90 (305)
T ss_pred cCCHHHHHHHHHHHhcCCCCCcEEEEccCCCCCCCHHHHHhhcCCcEEEEEcCCC-ccchhhhhHHHHHHhcCCCcEEEE
Confidence 5666777777888877665555555443 23333333332 4555555443 24445555566655323 238999
Q ss_pred EcCCCcCCCHHHHHHHHHHHHhCCCeEEEEee
Q 028257 144 IQGDEPLIEPEIIDGVVKALQAAPDAVFSTAV 175 (211)
Q Consensus 144 ~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~ 175 (211)
++-|. .++++.+.++++.+++.++..+....
T Consensus 91 LN~D~-~~~~~~l~~ll~~~~~~~~~~~~~~~ 121 (305)
T COG1216 91 LNPDT-VVEPDLLEELLKAAEEDPAAGVVGPL 121 (305)
T ss_pred EcCCe-eeChhHHHHHHHHHHhCCCCeEeeee
Confidence 99996 78999999999999876555544443
No 151
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.54 E-value=0.91 Score=35.97 Aligned_cols=94 Identities=16% Similarity=0.200 Sum_probs=57.0
Q ss_pred CCeehHHHHHHHHHcCCCC-CeEEEEcC--cHH----HHHHHHHcCCeE-eeCCcccCCChHHHHHHHHhhccCCCEEEE
Q 028257 72 LGKPMIQRTWERSKLATTL-DHLVVATD--DEK----IAECCQQFGADV-IMTSESCRNGTERCNEALQKLEKKYDIVVN 143 (211)
Q Consensus 72 ~GkpLl~~~i~~l~~~~~i-d~IVVvt~--~e~----i~~~~~~~~v~v-i~~~~~~~g~~~si~~al~~l~~~~d~vlv 143 (211)
+....|..+++.+.+...- -+|+|+-+ .+. ++++..+++..+ +...+.-.|....+..|+... +.|++++
T Consensus 8 n~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~n~g~~~~--~g~~v~~ 85 (214)
T cd04196 8 NGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYIDKDPFIIILIRNGKNLGVARNFESLLQAA--DGDYVFF 85 (214)
T ss_pred CcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHhcCCceEEEEeCCCCccHHHHHHHHHHhC--CCCEEEE
Confidence 4456778888888754321 25666653 222 333333333222 232222234455666777765 5899999
Q ss_pred EcCCCcCCCHHHHHHHHHHHHhCCC
Q 028257 144 IQGDEPLIEPEIIDGVVKALQAAPD 168 (211)
Q Consensus 144 ~~~D~Pli~~~~i~~li~~~~~~~d 168 (211)
++.|. .+.++.+..+++.+.+.+.
T Consensus 86 ld~Dd-~~~~~~l~~~~~~~~~~~~ 109 (214)
T cd04196 86 CDQDD-IWLPDKLERLLKAFLKDDK 109 (214)
T ss_pred ECCCc-ccChhHHHHHHHHHhcCCC
Confidence 99998 6789999999998544333
No 152
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.40 E-value=0.9 Score=36.04 Aligned_cols=92 Identities=15% Similarity=0.241 Sum_probs=58.3
Q ss_pred cCCeehHHHHHHHHHcCCC-CCeEEEEcC--cHHHHHHHHHcCC----eEeeCCcccCCChHHHHHHHHhhc-cCCCEEE
Q 028257 71 ILGKPMIQRTWERSKLATT-LDHLVVATD--DEKIAECCQQFGA----DVIMTSESCRNGTERCNEALQKLE-KKYDIVV 142 (211)
Q Consensus 71 l~GkpLl~~~i~~l~~~~~-id~IVVvt~--~e~i~~~~~~~~v----~vi~~~~~~~g~~~si~~al~~l~-~~~d~vl 142 (211)
+++...|..+++.+.+... -.+|+|+-+ .+...++++++.. .++..++ ..|...++..+++... .+.|+++
T Consensus 6 ~n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~~~~~~i~~~~~~~-n~g~~~~~n~~~~~a~~~~~d~v~ 84 (202)
T cd04185 6 YNRLDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSLGDLDNIVYLRLPE-NLGGAGGFYEGVRRAYELGYDWIW 84 (202)
T ss_pred eCCHHHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHhcCCCceEEEECcc-ccchhhHHHHHHHHHhccCCCEEE
Confidence 3556778888998876432 236666653 3444555554432 3343332 2344444555555432 2578999
Q ss_pred EEcCCCcCCCHHHHHHHHHHHH
Q 028257 143 NIQGDEPLIEPEIIDGVVKALQ 164 (211)
Q Consensus 143 v~~~D~Pli~~~~i~~li~~~~ 164 (211)
++++|. .+.++.++.+++.+.
T Consensus 85 ~ld~D~-~~~~~~l~~l~~~~~ 105 (202)
T cd04185 85 LMDDDA-IPDPDALEKLLAYAD 105 (202)
T ss_pred EeCCCC-CcChHHHHHHHHHHh
Confidence 999999 788999999999886
No 153
>PRK10063 putative glycosyl transferase; Provisional
Probab=94.37 E-value=1.2 Score=37.55 Aligned_cols=81 Identities=6% Similarity=0.077 Sum_probs=46.1
Q ss_pred CCeehHHHHHHHHHcC---CCC-CeEEEEcC--cHHHHHHHHHc----CCeEeeCCcccCCChHHHHHHHHhhccCCCEE
Q 028257 72 LGKPMIQRTWERSKLA---TTL-DHLVVATD--DEKIAECCQQF----GADVIMTSESCRNGTERCNEALQKLEKKYDIV 141 (211)
Q Consensus 72 ~GkpLl~~~i~~l~~~---~~i-d~IVVvt~--~e~i~~~~~~~----~v~vi~~~~~~~g~~~si~~al~~l~~~~d~v 141 (211)
+....|..+++.+.+. ... -+++|+-+ .+...++++++ .+.++.. ...|...++..|++.. ..|++
T Consensus 11 N~~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~i~~~~~~~~~i~~i~~--~~~G~~~A~N~Gi~~a--~g~~v 86 (248)
T PRK10063 11 RNLEGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREFLENLNGIFNLRFVSE--PDNGIYDAMNKGIAMA--QGRFA 86 (248)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHHHHHHhcccCCEEEEEC--CCCCHHHHHHHHHHHc--CCCEE
Confidence 4455677777777521 111 25666543 34444555544 2344432 2235456777888876 57999
Q ss_pred EEEcCCCcCCCHHHHH
Q 028257 142 VNIQGDEPLIEPEIID 157 (211)
Q Consensus 142 lv~~~D~Pli~~~~i~ 157 (211)
+++++|. +..++.++
T Consensus 87 ~~ld~DD-~~~~~~~~ 101 (248)
T PRK10063 87 LFLNSGD-IFHQDAAN 101 (248)
T ss_pred EEEeCCc-ccCcCHHH
Confidence 9999877 44455444
No 154
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=94.33 E-value=0.8 Score=37.19 Aligned_cols=87 Identities=11% Similarity=0.132 Sum_probs=56.1
Q ss_pred ccCCe-ehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHH--HcCCeEeeCCcccCCChHHHHHHHHhhcc-CCCEEEE
Q 028257 70 NILGK-PMIQRTWERSKLATTLDHLVVATDD--EKIAECCQ--QFGADVIMTSESCRNGTERCNEALQKLEK-KYDIVVN 143 (211)
Q Consensus 70 ~l~Gk-pLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~--~~~v~vi~~~~~~~g~~~si~~al~~l~~-~~d~vlv 143 (211)
.+++. ..+..+++.+.+. ..+|+|+-+. +......+ ..++.++..+ .-.|...+...|++.... +.|++++
T Consensus 5 ~yn~~~~~l~~~l~sl~~q--~~~iivvDn~s~~~~~~~~~~~~~~i~~i~~~-~n~G~~~a~N~g~~~a~~~~~d~v~~ 81 (237)
T cd02526 5 TYNPDLSKLKELLAALAEQ--VDKVVVVDNSSGNDIELRLRLNSEKIELIHLG-ENLGIAKALNIGIKAALENGADYVLL 81 (237)
T ss_pred EecCCHHHHHHHHHHHhcc--CCEEEEEeCCCCccHHHHhhccCCcEEEEECC-CceehHHhhhHHHHHHHhCCCCEEEE
Confidence 34666 8899999998864 5577776542 22222222 2234444433 234545566777877642 4699999
Q ss_pred EcCCCcCCCHHHHHHHH
Q 028257 144 IQGDEPLIEPEIIDGVV 160 (211)
Q Consensus 144 ~~~D~Pli~~~~i~~li 160 (211)
+++|. .++++.+..++
T Consensus 82 lD~D~-~~~~~~l~~l~ 97 (237)
T cd02526 82 FDQDS-VPPPDMVEKLL 97 (237)
T ss_pred ECCCC-CcCHhHHHHHH
Confidence 99999 67899999995
No 155
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=94.20 E-value=1 Score=38.13 Aligned_cols=89 Identities=10% Similarity=0.051 Sum_probs=59.5
Q ss_pred eehHHHHHHHHHcCCCCCeEEEEcCc----HHHHHHHHHc-CCeEeeCCcccCCChHHHHHHHHhhc-cCCCEEEEEcCC
Q 028257 74 KPMIQRTWERSKLATTLDHLVVATDD----EKIAECCQQF-GADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGD 147 (211)
Q Consensus 74 kpLl~~~i~~l~~~~~id~IVVvt~~----e~i~~~~~~~-~v~vi~~~~~~~g~~~si~~al~~l~-~~~d~vlv~~~D 147 (211)
...|..+++.+.+. ..+|+|+-|. +.+.+..+.. .+.++..++ -.|...+...|++.+. .+.|++++++.|
T Consensus 7 ~~~l~~~l~sl~~q--~~~iiVVDN~S~~~~~~~~~~~~~~~i~~i~~~~-N~G~a~a~N~Gi~~a~~~~~d~i~~lD~D 83 (281)
T TIGR01556 7 LEHLGELITSLPKQ--VDRIIAVDNSPHSDQPLKNARLRGQKIALIHLGD-NQGIAGAQNQGLDASFRRGVQGVLLLDQD 83 (281)
T ss_pred HHHHHHHHHHHHhc--CCEEEEEECcCCCcHhHHHHhccCCCeEEEECCC-CcchHHHHHHHHHHHHHCCCCEEEEECCC
Confidence 35778888888764 4677777653 2444444432 345544432 2355566777777652 257999999999
Q ss_pred CcCCCHHHHHHHHHHHHhC
Q 028257 148 EPLIEPEIIDGVVKALQAA 166 (211)
Q Consensus 148 ~Pli~~~~i~~li~~~~~~ 166 (211)
. .+.++.+..+++.+.+.
T Consensus 84 ~-~~~~~~l~~l~~~~~~~ 101 (281)
T TIGR01556 84 S-RPGNAFLAAQWKLLSAE 101 (281)
T ss_pred C-CCCHHHHHHHHHHHHhc
Confidence 9 67899999999988654
No 156
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=93.94 E-value=1.7 Score=36.94 Aligned_cols=43 Identities=21% Similarity=0.425 Sum_probs=33.5
Q ss_pred HHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCC
Q 028257 125 ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168 (211)
Q Consensus 125 ~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d 168 (211)
..+..++.....+.|+++++++|. .+.++.+..++..+..+++
T Consensus 83 g~l~~~~~~~~~~~~~i~~~DaD~-~~~p~~l~~~v~~~~~~~~ 125 (254)
T cd04191 83 GNIADFCRRWGSRYDYMVVLDADS-LMSGDTIVRLVRRMEANPR 125 (254)
T ss_pred HHHHHHHHHhCCCCCEEEEEeCCC-CCCHHHHHHHHHHHHhCCC
Confidence 445666665323579999999999 8999999999999875544
No 157
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=93.11 E-value=2 Score=34.23 Aligned_cols=93 Identities=16% Similarity=0.207 Sum_probs=56.8
Q ss_pred cCCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHH-H---cCCeEeeCCc--ccCCChHHHHHHHHhhcc------
Q 028257 71 ILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQ-Q---FGADVIMTSE--SCRNGTERCNEALQKLEK------ 136 (211)
Q Consensus 71 l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~-~---~~v~vi~~~~--~~~g~~~si~~al~~l~~------ 136 (211)
++....|..+++.+.+...-.+|+|+.+ .+...++++ . .++.++.... .-.|...++..|++.+..
T Consensus 6 ~Ne~~~l~~~l~sl~~~~~~~eIivvdd~S~D~t~~~~~~~~~~~~v~~i~~~~~~~~~Gk~~aln~g~~~~~~~~~~~g 85 (191)
T cd06436 6 LNEEAVIQRTLASLLRNKPNFLVLVIDDASDDDTAGIVRLAITDSRVHLLRRHLPNARTGKGDALNAAYDQIRQILIEEG 85 (191)
T ss_pred cccHHHHHHHHHHHHhCCCCeEEEEEECCCCcCHHHHHhheecCCcEEEEeccCCcCCCCHHHHHHHHHHHHhhhccccc
Confidence 3566788899998886532235666654 333344443 1 1334443321 122444567777776531
Q ss_pred ---CCCEEEEEcCCCcCCCHHHHHHHHHHHH
Q 028257 137 ---KYDIVVNIQGDEPLIEPEIIDGVVKALQ 164 (211)
Q Consensus 137 ---~~d~vlv~~~D~Pli~~~~i~~li~~~~ 164 (211)
+.|+++++++|. .++++.+..+...+.
T Consensus 86 ~~~~~d~v~~~DaD~-~~~~~~l~~~~~~~~ 115 (191)
T cd06436 86 ADPERVIIAVIDADG-RLDPNALEAVAPYFS 115 (191)
T ss_pred cCCCccEEEEECCCC-CcCHhHHHHHHHhhc
Confidence 247999999999 689999999776664
No 158
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=93.06 E-value=2 Score=41.92 Aligned_cols=91 Identities=15% Similarity=0.295 Sum_probs=54.2
Q ss_pred HHHHHHHHHcCCCCC--eEEEEcC--cHHH--------HHHHHHcC--CeEeeCCcccC-C-ChHHHHHHHHhhccCCCE
Q 028257 77 IQRTWERSKLATTLD--HLVVATD--DEKI--------AECCQQFG--ADVIMTSESCR-N-GTERCNEALQKLEKKYDI 140 (211)
Q Consensus 77 l~~~i~~l~~~~~id--~IVVvt~--~e~i--------~~~~~~~~--v~vi~~~~~~~-g-~~~si~~al~~l~~~~d~ 140 (211)
++.+++.+...+.-+ +++|+.| ++++ .+++++++ .+++++..... + ....+..+++....+.|+
T Consensus 144 L~a~~~Sl~~~~~~~~~e~~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~yr~R~~n~~~KaGNl~~~~~~~~~~~ey 223 (691)
T PRK05454 144 LRAMYESLAATGHGAHFDFFILSDTRDPDIAAAEEAAWLELRAELGGEGRIFYRRRRRNVGRKAGNIADFCRRWGGAYDY 223 (691)
T ss_pred HHHHHHHHHhcCCCCCEEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCcEEEEECCcCCCccHHHHHHHHHhcCCCcCE
Confidence 555566555433322 5666665 2322 23444542 34544322111 1 223455666665446799
Q ss_pred EEEEcCCCcCCCHHHHHHHHHHHHhCCC
Q 028257 141 VVNIQGDEPLIEPEIIDGVVKALQAAPD 168 (211)
Q Consensus 141 vlv~~~D~Pli~~~~i~~li~~~~~~~d 168 (211)
++++|+|. .++++.+.+++..++.+++
T Consensus 224 ivvLDADs-~m~~d~L~~lv~~m~~dP~ 250 (691)
T PRK05454 224 MVVLDADS-LMSGDTLVRLVRLMEANPR 250 (691)
T ss_pred EEEEcCCC-CCCHHHHHHHHHHHhhCcC
Confidence 99999999 8999999999999875554
No 159
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=92.89 E-value=2.6 Score=32.56 Aligned_cols=89 Identities=16% Similarity=0.204 Sum_probs=53.4
Q ss_pred CCeehHHHHHHHHHcCCC-CCeEEEEcC--cHHHHHHHHHc----CCeE--eeCCcccCCChHHHHHHHHhhccCCCEEE
Q 028257 72 LGKPMIQRTWERSKLATT-LDHLVVATD--DEKIAECCQQF----GADV--IMTSESCRNGTERCNEALQKLEKKYDIVV 142 (211)
Q Consensus 72 ~GkpLl~~~i~~l~~~~~-id~IVVvt~--~e~i~~~~~~~----~v~v--i~~~~~~~g~~~si~~al~~l~~~~d~vl 142 (211)
+....++.+++.+.+... -.+|+|+-+ .+...++++++ ..++ +..+..-.+.......|++.. ..++++
T Consensus 7 n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~a--~g~~i~ 84 (182)
T cd06420 7 NRPEALELVLKSVLNQSILPFEVIIADDGSTEETKELIEEFKSQFPIPIKHVWQEDEGFRKAKIRNKAIAAA--KGDYLI 84 (182)
T ss_pred CChHHHHHHHHHHHhccCCCCEEEEEeCCCchhHHHHHHHHHhhcCCceEEEEcCCcchhHHHHHHHHHHHh--cCCEEE
Confidence 345667888888876432 236776654 23333333322 2222 222211112223455677765 579999
Q ss_pred EEcCCCcCCCHHHHHHHHHHH
Q 028257 143 NIQGDEPLIEPEIIDGVVKAL 163 (211)
Q Consensus 143 v~~~D~Pli~~~~i~~li~~~ 163 (211)
++++|. .++++.+..+++.+
T Consensus 85 ~lD~D~-~~~~~~l~~~~~~~ 104 (182)
T cd06420 85 FIDGDC-IPHPDFIADHIELA 104 (182)
T ss_pred EEcCCc-ccCHHHHHHHHHHh
Confidence 999999 77999999999887
No 160
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=92.75 E-value=2.7 Score=33.58 Aligned_cols=89 Identities=12% Similarity=0.182 Sum_probs=55.6
Q ss_pred CCeehHHHHHHHHHcCCC-CCeEEEEcC--cHHHHHHHHHcCCeEeeCCcccCCChHHHHHHHHhhccCCCEEEEEcCCC
Q 028257 72 LGKPMIQRTWERSKLATT-LDHLVVATD--DEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDE 148 (211)
Q Consensus 72 ~GkpLl~~~i~~l~~~~~-id~IVVvt~--~e~i~~~~~~~~v~vi~~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~ 148 (211)
+....+..+++.+.+... ..+|+|+-+ .+...+++++.++.++..+ .|.......|++.+ ..+++++++.|.
T Consensus 9 n~~~~l~~~l~sl~~q~~~~~evivvdd~s~d~~~~~~~~~~~~~~~~~---~g~~~a~n~g~~~a--~~~~i~~~D~D~ 83 (221)
T cd02522 9 NEAENLPRLLASLRRLNPLPLEIIVVDGGSTDGTVAIARSAGVVVISSP---KGRARQMNAGAAAA--RGDWLLFLHADT 83 (221)
T ss_pred CcHHHHHHHHHHHHhccCCCcEEEEEeCCCCccHHHHHhcCCeEEEeCC---cCHHHHHHHHHHhc--cCCEEEEEcCCC
Confidence 334567788888776431 246766654 2344455555444433322 23334455677776 479999999998
Q ss_pred cCCCHHHHHHHHHHHHhC
Q 028257 149 PLIEPEIIDGVVKALQAA 166 (211)
Q Consensus 149 Pli~~~~i~~li~~~~~~ 166 (211)
.++++.+++++....+.
T Consensus 84 -~~~~~~l~~l~~~~~~~ 100 (221)
T cd02522 84 -RLPPDWDAAIIETLRAD 100 (221)
T ss_pred -CCChhHHHHHHHHhhcC
Confidence 67899999987766543
No 161
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=91.71 E-value=0.12 Score=47.60 Aligned_cols=77 Identities=22% Similarity=0.157 Sum_probs=51.2
Q ss_pred CCCCCCCCCCCCchhHHHHHHhhcchhhhhhceeehcccCCCCCCcEEEEEecCCCCCCCC---CccccccC---CeehH
Q 028257 4 KSICSPSESSSSTKSWIVHGIVAGAAIAVAVGARAYLGRSKNFRSRVVGIIPARFASSRFE---GKPLVNIL---GKPMI 77 (211)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~i~aIIlA~G~ssRlg---~K~ll~l~---GkpLl 77 (211)
+++|..+|-.- .++|.+.+ .+.. .+.++...++..-..-+..++++|||.|+|+| +|.+.+++ |++++
T Consensus 58 ~~~~~~~p~p~-~~~~~~~~--~~~~---d~d~~~~~G~~~i~~~~~a~~llaGgqgtRLg~~~pkg~~~~G~~~~~slf 131 (477)
T KOG2388|consen 58 KPVGEIRPVPE-SKSWPLKE--RGLD---DVDQWWKEGLRLIAEGKVAVVLLAGGQGTRLGSSGPKGCYPIGLPSGKSLF 131 (477)
T ss_pred CcccccCCCCc-cccceecc--cCch---hhhHHHhcChhhhhcCcceEEEeccCceeeeccCCCcceeecCCccccchh
Confidence 56666666555 66776543 2222 23333334444444456789999999999997 59999987 56799
Q ss_pred HHHHHHHHc
Q 028257 78 QRTWERSKL 86 (211)
Q Consensus 78 ~~~i~~l~~ 86 (211)
++..+++..
T Consensus 132 ~~qae~il~ 140 (477)
T KOG2388|consen 132 QIQAERILK 140 (477)
T ss_pred hhhHHHHHH
Confidence 988877763
No 162
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=89.50 E-value=6 Score=29.41 Aligned_cols=98 Identities=22% Similarity=0.267 Sum_probs=55.6
Q ss_pred CCcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCC-eEEEEcC--cHHHHHHHHHcCCe---Ee-eCCcc
Q 028257 47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLD-HLVVATD--DEKIAECCQQFGAD---VI-MTSES 119 (211)
Q Consensus 47 ~m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id-~IVVvt~--~e~i~~~~~~~~v~---vi-~~~~~ 119 (211)
+|++.+|||+-. ....|..+++.+.+....+ +++|+-+ .+...++++++... +. .....
T Consensus 2 ~~~~siiip~~n--------------~~~~l~~~l~s~~~q~~~~~eiivvddgs~d~t~~~~~~~~~~~~~~~~~~~~~ 67 (291)
T COG0463 2 MPKVSVVIPTYN--------------EEEYLPEALESLLNQTYKDFEIIVVDDGSTDGTTEIAIEYGAKDVRVIRLINER 67 (291)
T ss_pred CccEEEEEeccc--------------hhhhHHHHHHHHHhhhhcceEEEEEeCCCCCChHHHHHHHhhhcceEEEeeccc
Confidence 567888888743 3356677777776543332 5655543 34444444444322 22 22222
Q ss_pred cCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHH
Q 028257 120 CRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA 162 (211)
Q Consensus 120 ~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~ 162 (211)
-.|...+...++.... .++++++++|.- ..+ .+..+.+.
T Consensus 68 ~~g~~~~~~~~~~~~~--~~~~~~~d~d~~-~~~-~~~~~~~~ 106 (291)
T COG0463 68 NGGLGAARNAGLEYAR--GDYIVFLDADDQ-HPP-ELIPLVAA 106 (291)
T ss_pred CCChHHHHHhhHHhcc--CCEEEEEccCCC-CCH-HHHHHHHH
Confidence 2344456677777764 589999999996 544 44444433
No 163
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=89.20 E-value=12 Score=31.11 Aligned_cols=94 Identities=15% Similarity=0.241 Sum_probs=56.7
Q ss_pred ehHHHHHHHHHcCCCCC-eEEEEcC--c----HHHHHHHHHcC-CeEeeCCcc-cCCChHHHHHHHHhhccCCCEEEEEc
Q 028257 75 PMIQRTWERSKLATTLD-HLVVATD--D----EKIAECCQQFG-ADVIMTSES-CRNGTERCNEALQKLEKKYDIVVNIQ 145 (211)
Q Consensus 75 pLl~~~i~~l~~~~~id-~IVVvt~--~----e~i~~~~~~~~-v~vi~~~~~-~~g~~~si~~al~~l~~~~d~vlv~~ 145 (211)
|++.|.+.......+.+ +|+++-| + +..+++.+.+| -++...+.. -.|-.++..+|+++. +.+.+++++
T Consensus 19 pi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~yg~d~i~l~pR~~klGLgtAy~hgl~~a--~g~fiviMD 96 (238)
T KOG2978|consen 19 PIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIYGEDNILLKPRTKKLGLGTAYIHGLKHA--TGDFIVIMD 96 (238)
T ss_pred eeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHhCCCcEEEEeccCcccchHHHHhhhhhc--cCCeEEEEe
Confidence 67777776655422333 5666554 2 22333333354 334333322 224346778899988 578999999
Q ss_pred CCCcCCCHHHHHHHHHHHHhC-CCeEE
Q 028257 146 GDEPLIEPEIIDGVVKALQAA-PDAVF 171 (211)
Q Consensus 146 ~D~Pli~~~~i~~li~~~~~~-~d~vv 171 (211)
+|. -=.|+.|-++++..+++ .|.+.
T Consensus 97 aDl-sHhPk~ipe~i~lq~~~~~div~ 122 (238)
T KOG2978|consen 97 ADL-SHHPKFIPEFIRLQKEGNYDIVL 122 (238)
T ss_pred Ccc-CCCchhHHHHHHHhhccCcceee
Confidence 998 46788999999887654 35443
No 164
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=89.06 E-value=1.3 Score=35.84 Aligned_cols=87 Identities=20% Similarity=0.306 Sum_probs=48.8
Q ss_pred eehHHHHHHHHHcCCCC-CeEEEEcC--c----HHHHHHHHHcC---CeEeeCCcccCC---ChHHHHHHHHhhccCCCE
Q 028257 74 KPMIQRTWERSKLATTL-DHLVVATD--D----EKIAECCQQFG---ADVIMTSESCRN---GTERCNEALQKLEKKYDI 140 (211)
Q Consensus 74 kpLl~~~i~~l~~~~~i-d~IVVvt~--~----e~i~~~~~~~~---v~vi~~~~~~~g---~~~si~~al~~l~~~~d~ 140 (211)
...+..+++.+...... -+|+|+.+ + +.+.+++..++ +.++..+... | ....+..+++.. +.|+
T Consensus 13 ~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~~-g~~~k~~a~n~~~~~~--~~d~ 89 (228)
T PF13641_consen 13 DDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRPRNP-GPGGKARALNEALAAA--RGDY 89 (228)
T ss_dssp HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE----H-HHHHHHHHHHHHHHH-----SE
T ss_pred HHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecCCCC-CcchHHHHHHHHHHhc--CCCE
Confidence 45777778877753221 24555553 2 23444544443 3444433211 2 123456777776 4899
Q ss_pred EEEEcCCCcCCCHHHHHHHHHHHH
Q 028257 141 VVNIQGDEPLIEPEIIDGVVKALQ 164 (211)
Q Consensus 141 vlv~~~D~Pli~~~~i~~li~~~~ 164 (211)
++++++|. .++++.++.+++.+.
T Consensus 90 i~~lD~D~-~~~p~~l~~~~~~~~ 112 (228)
T PF13641_consen 90 ILFLDDDT-VLDPDWLERLLAAFA 112 (228)
T ss_dssp EEEE-SSE-EE-CHHHHHHHHHHH
T ss_pred EEEECCCc-EECHHHHHHHHHHHH
Confidence 99999999 669999999999993
No 165
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=87.17 E-value=13 Score=34.99 Aligned_cols=92 Identities=14% Similarity=0.196 Sum_probs=51.7
Q ss_pred cCCeehHHHHHHHH-HcCCCCC-eEEEEcC--c-H---HHHHHHHHcC-CeEeeCCccc-CCChHHHHHHHHhh------
Q 028257 71 ILGKPMIQRTWERS-KLATTLD-HLVVATD--D-E---KIAECCQQFG-ADVIMTSESC-RNGTERCNEALQKL------ 134 (211)
Q Consensus 71 l~GkpLl~~~i~~l-~~~~~id-~IVVvt~--~-e---~i~~~~~~~~-v~vi~~~~~~-~g~~~si~~al~~l------ 134 (211)
+++...|..+++.+ .+...-+ +|+|+.+ + + .++++++++. +.++..+... .+....+..+++.+
T Consensus 75 ~NE~~vI~~~l~s~L~~ldY~~~eIiVv~d~ndd~T~~~v~~l~~~~p~v~~vv~~~~gp~~Ka~aLN~~l~~~~~~e~~ 154 (504)
T PRK14716 75 WREADVIGRMLEHNLATLDYENYRIFVGTYPNDPATLREVDRLAARYPRVHLVIVPHDGPTSKADCLNWIYQAIFAFERE 154 (504)
T ss_pred cCchhHHHHHHHHHHHcCCCCCeEEEEEECCCChhHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHhhhh
Confidence 35667888888864 4432212 5777652 2 2 3334444443 4433332221 12234555565543
Q ss_pred c-cCCCEEEEEcCCCcCCCHHHHHHHHHHH
Q 028257 135 E-KKYDIVVNIQGDEPLIEPEIIDGVVKAL 163 (211)
Q Consensus 135 ~-~~~d~vlv~~~D~Pli~~~~i~~li~~~ 163 (211)
. .+.|+++++|+|. .++++.++.+...+
T Consensus 155 ~G~~~d~vvi~DAD~-~v~Pd~Lr~~~~~~ 183 (504)
T PRK14716 155 RGIRFAIIVLHDAED-VIHPLELRLYNYLL 183 (504)
T ss_pred cCCCcCEEEEEcCCC-CcCccHHHHHHhhc
Confidence 1 1348999999999 79999988765443
No 166
>COG3222 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.70 E-value=9.3 Score=31.30 Aligned_cols=91 Identities=14% Similarity=0.188 Sum_probs=61.2
Q ss_pred eehHHHHHHHHHcCCCCCeEEEEcC----cHHHHHHHHHcCCeEeeCCcccCCChHHHHHH-HHhhccCCCEEEEEcCCC
Q 028257 74 KPMIQRTWERSKLATTLDHLVVATD----DEKIAECCQQFGADVIMTSESCRNGTERCNEA-LQKLEKKYDIVVNIQGDE 148 (211)
Q Consensus 74 kpLl~~~i~~l~~~~~id~IVVvt~----~e~i~~~~~~~~v~vi~~~~~~~g~~~si~~a-l~~l~~~~d~vlv~~~D~ 148 (211)
+-|++|+++...+.+.....+.-++ ....+++...+|....+.+.-. ...++++.. ...+. ....|+++--|.
T Consensus 37 r~lle~tl~~v~~~~~~~~a~l~~~d~d~~~dlq~m~~~Lg~~lvyqpqGd-d~gdRlars~~~a~~-~~~~VliIg~Dc 114 (211)
T COG3222 37 RQLLEDTLDAVAAAPVTARAVLLIGDLDSGGDLQEMRRWLGSFLVYQPQGD-DLGDRLARSHVDAFD-GSYPVLIIGMDC 114 (211)
T ss_pred HHHHHHHHHHHHhhhhhhcceeeeecccccccHHHHHHHhhhheeecccCC-CHHHHHHHHHHHHhc-CCCcEEEEecCC
Confidence 4789999999988765555554332 2334555556677777765432 233565443 33343 336899999999
Q ss_pred cCCCHHHHHHHHHHHHhC
Q 028257 149 PLIEPEIIDGVVKALQAA 166 (211)
Q Consensus 149 Pli~~~~i~~li~~~~~~ 166 (211)
|-++.+.+..+..++.+.
T Consensus 115 P~lt~elLa~a~taL~~~ 132 (211)
T COG3222 115 PGLTAELLADAFTALLQI 132 (211)
T ss_pred CccCHHHHHHHHHHHhcC
Confidence 999999999999888654
No 167
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=85.32 E-value=8 Score=27.13 Aligned_cols=79 Identities=19% Similarity=0.252 Sum_probs=44.7
Q ss_pred eehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHHc-CCeEeeCCcccCCCh--HHHHHHHHhhccCCCEEEEEcCCC
Q 028257 74 KPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQF-GADVIMTSESCRNGT--ERCNEALQKLEKKYDIVVNIQGDE 148 (211)
Q Consensus 74 kpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~~-~v~vi~~~~~~~g~~--~si~~al~~l~~~~d~vlv~~~D~ 148 (211)
.++|..-+.--... ++++++|..+ .+...++++++ ++.++....+..... .....++..-..+.+|++.+++|-
T Consensus 4 ~~~L~~wl~~~~~l-G~d~i~i~d~~s~D~t~~~l~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~dWvl~~D~DE 82 (97)
T PF13704_consen 4 ADYLPEWLAHHLAL-GVDHIYIYDDGSTDGTREILRALPGVGIIRWVDPYRDERRQRAWRNALIERAFDADWVLFLDADE 82 (97)
T ss_pred HHHHHHHHHHHHHc-CCCEEEEEECCCCccHHHHHHhCCCcEEEEeCCCccchHHHHHHHHHHHHhCCCCCEEEEEeeeE
Confidence 35566666666665 6999999875 34455666554 355544433332211 122333332223579999999998
Q ss_pred cCCCH
Q 028257 149 PLIEP 153 (211)
Q Consensus 149 Pli~~ 153 (211)
-+..+
T Consensus 83 fl~~~ 87 (97)
T PF13704_consen 83 FLVPP 87 (97)
T ss_pred EEecC
Confidence 54443
No 168
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=84.34 E-value=12 Score=30.94 Aligned_cols=32 Identities=19% Similarity=0.429 Sum_probs=27.5
Q ss_pred CCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCe
Q 028257 137 KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDA 169 (211)
Q Consensus 137 ~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~ 169 (211)
+.|+++++++|. .+.++.+..+++.+..+++.
T Consensus 73 ~~e~i~~~DaD~-~~~~~~l~~l~~~~~~~p~v 104 (244)
T cd04190 73 DPEFILLVDADT-KFDPDSIVQLYKAMDKDPEI 104 (244)
T ss_pred CCCEEEEECCCC-cCCHhHHHHHHHHHHhCCCE
Confidence 579999999999 67999999999998655553
No 169
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=83.69 E-value=35 Score=33.70 Aligned_cols=91 Identities=14% Similarity=0.244 Sum_probs=54.4
Q ss_pred cCCeehHHHHHHHHH-c--CCCCCeEEEEc--Cc----HHHHHHHHHcC-CeEeeCCcc-cCCChHHHHHHHHhh-----
Q 028257 71 ILGKPMIQRTWERSK-L--ATTLDHLVVAT--DD----EKIAECCQQFG-ADVIMTSES-CRNGTERCNEALQKL----- 134 (211)
Q Consensus 71 l~GkpLl~~~i~~l~-~--~~~id~IVVvt--~~----e~i~~~~~~~~-v~vi~~~~~-~~g~~~si~~al~~l----- 134 (211)
++....+..+++.+. . -+.+ +|++++ |+ +.+++++++++ +.++..+.. -.|....+..+++.+
T Consensus 72 ~nE~~vi~~~i~~ll~~ldYP~~-eI~vi~~~nD~~T~~~~~~l~~~~p~~~~v~~~~~g~~gKa~aLN~~l~~~~~~e~ 150 (727)
T PRK11234 72 WNETGVIGNMAELAATTLDYENY-HIFVGTYPNDPATQADVDAVCARFPNVHKVVCARPGPTSKADCLNNVLDAITQFER 150 (727)
T ss_pred CcchhhHHHHHHHHHHhCCCCCe-EEEEEecCCChhHHHHHHHHHHHCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhhhc
Confidence 356678888888764 2 2233 677764 22 23444555554 444433322 123345667777765
Q ss_pred --ccCCCEEEEEcCCCcCCCHHHHHHHHHHHH
Q 028257 135 --EKKYDIVVNIQGDEPLIEPEIIDGVVKALQ 164 (211)
Q Consensus 135 --~~~~d~vlv~~~D~Pli~~~~i~~li~~~~ 164 (211)
..+.+.++++|+|. .++++.++ ++..+.
T Consensus 151 ~~~~~~~vvvi~DAD~-~v~pd~L~-~~~~l~ 180 (727)
T PRK11234 151 SANFAFAGFILHDAED-VISPMELR-LFNYLV 180 (727)
T ss_pred ccCCcccEEEEEcCCC-CCChhHHH-HHHhhc
Confidence 22457889999999 89999998 555553
No 170
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=82.66 E-value=35 Score=30.44 Aligned_cols=102 Identities=20% Similarity=0.309 Sum_probs=58.7
Q ss_pred CCee-hHHHHHHHHHcCC-C--CCeEEEEcC--cHHHHHHHHHc--CCeEeeCCccc-C--C------ChHHHH----HH
Q 028257 72 LGKP-MIQRTWERSKLAT-T--LDHLVVATD--DEKIAECCQQF--GADVIMTSESC-R--N------GTERCN----EA 130 (211)
Q Consensus 72 ~Gkp-Ll~~~i~~l~~~~-~--id~IVVvt~--~e~i~~~~~~~--~v~vi~~~~~~-~--g------~~~si~----~a 130 (211)
.++| -+.++|+.+.+.. . -.+|+|+.| .++..+.++.+ .++++..+... . + .-.++. .|
T Consensus 9 yNRp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~~~~~v~~~~~~i~~i~~~~~~~~~~~~~~~~~~y~~ia~hyk~a 88 (334)
T cd02514 9 CNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEEVADVAKSFGDGVTHIQHPPISIKNVNPPHKFQGYYRIARHYKWA 88 (334)
T ss_pred cCCHHHHHHHHHHHHhccccCCCceEEEEeCCCchHHHHHHHhhccccEEEEcccccccccCcccccchhhHHHHHHHHH
Confidence 4556 6889999998752 1 236777754 34455666555 44444332110 0 1 111222 36
Q ss_pred HHhhcc--CCCEEEEEcCCCcCCCHHHHHHH---HHHHHhCCCeEEEEee
Q 028257 131 LQKLEK--KYDIVVNIQGDEPLIEPEIIDGV---VKALQAAPDAVFSTAV 175 (211)
Q Consensus 131 l~~l~~--~~d~vlv~~~D~Pli~~~~i~~l---i~~~~~~~d~vv~v~~ 175 (211)
+..+-. +.+.++++..|. .+.++.++-+ +..+++ ...+.++..
T Consensus 89 ln~vF~~~~~~~vIILEDDl-~~sPdFf~yf~~~l~~y~~-D~~v~~ISa 136 (334)
T cd02514 89 LTQTFNLFGYSFVIILEDDL-DIAPDFFSYFQATLPLLEE-DPSLWCISA 136 (334)
T ss_pred HHHHHHhcCCCEEEEECCCC-ccCHhHHHHHHHHHHHHhc-CCCEEEEEe
Confidence 655432 378999999999 8999966554 444444 356666664
No 171
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=77.37 E-value=29 Score=30.27 Aligned_cols=99 Identities=6% Similarity=0.052 Sum_probs=59.1
Q ss_pred cCCCCCCcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCC-CCCeEEEEcCcHHHHHHHHHcCCeEeeCCccc
Q 028257 42 RSKNFRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLAT-TLDHLVVATDDEKIAECCQQFGADVIMTSESC 120 (211)
Q Consensus 42 ~~~~~~m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~-~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~ 120 (211)
|.....|| ..|++-|.|+= ++..+++.++.. ..+-+.|++|.+...+.+++++++++..+...
T Consensus 88 ~~~~~~~k--iavl~Sg~g~n--------------l~al~~~~~~~~l~~~i~~visn~~~~~~~A~~~gIp~~~~~~~~ 151 (289)
T PRK13010 88 HPDGQRPK--VVIMVSKFDHC--------------LNDLLYRWRMGELDMDIVGIISNHPDLQPLAVQHDIPFHHLPVTP 151 (289)
T ss_pred ecCCCCeE--EEEEEeCCCcc--------------HHHHHHHHHCCCCCcEEEEEEECChhHHHHHHHcCCCEEEeCCCc
Confidence 33334445 46777777662 355566665432 24445567788778888999999886533211
Q ss_pred --CCCh-HHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHH
Q 028257 121 --RNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGV 159 (211)
Q Consensus 121 --~g~~-~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~l 159 (211)
.... ..+...++... . .++++.+=+..++++.++..
T Consensus 152 ~~~~~~~~~~~~~l~~~~--~-Dlivlagym~il~~~~l~~~ 190 (289)
T PRK13010 152 DTKAQQEAQILDLIETSG--A-ELVVLARYMQVLSDDLSRKL 190 (289)
T ss_pred ccccchHHHHHHHHHHhC--C-CEEEEehhhhhCCHHHHhhc
Confidence 1111 23455566542 3 46777888888888887754
No 172
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=75.37 E-value=36 Score=29.60 Aligned_cols=97 Identities=9% Similarity=0.108 Sum_probs=55.4
Q ss_pred CCCCCcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCC-CCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCC
Q 028257 44 KNFRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLAT-TLDHLVVATDDEKIAECCQQFGADVIMTSESCRN 122 (211)
Q Consensus 44 ~~~~m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~-~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g 122 (211)
....|| ..|++-|.|+ -++..+++++... ..+-..|++|.+....++++++++++..+.....
T Consensus 86 ~~~~~r--i~vl~Sg~g~--------------nl~al~~~~~~~~~~~~i~~visn~~~~~~lA~~~gIp~~~~~~~~~~ 149 (286)
T PRK13011 86 PAARPK--VLIMVSKFDH--------------CLNDLLYRWRIGELPMDIVGVVSNHPDLEPLAAWHGIPFHHFPITPDT 149 (286)
T ss_pred cccCce--EEEEEcCCcc--------------cHHHHHHHHHcCCCCcEEEEEEECCccHHHHHHHhCCCEEEeCCCcCc
Confidence 333455 4667766544 4566677766532 2333445677777888888999987653211111
Q ss_pred --Ch-HHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHH
Q 028257 123 --GT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGV 159 (211)
Q Consensus 123 --~~-~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~l 159 (211)
.. ..+...++.. +.| ++++.+=+-.++++.++..
T Consensus 150 ~~~~~~~~~~~l~~~--~~D-livlagy~~il~~~~l~~~ 186 (286)
T PRK13011 150 KPQQEAQVLDVVEES--GAE-LVVLARYMQVLSPELCRKL 186 (286)
T ss_pred hhhhHHHHHHHHHHh--CcC-EEEEeChhhhCCHHHHhhc
Confidence 11 2244455554 244 4566677778888777654
No 173
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=73.86 E-value=3.9 Score=34.77 Aligned_cols=100 Identities=14% Similarity=0.185 Sum_probs=59.6
Q ss_pred eehHHHHHHHHHcCCCCCeEEEEcCcHH-HH--HHHHHcCCeEeeCCcccCCChHHHHHHHHhhccCCCEEEEEcCCCcC
Q 028257 74 KPMIQRTWERSKLATTLDHLVVATDDEK-IA--ECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPL 150 (211)
Q Consensus 74 kpLl~~~i~~l~~~~~id~IVVvt~~e~-i~--~~~~~~~v~vi~~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pl 150 (211)
...|..+++.+.+++.+.+|+|+=+++. .- ......++.+.+..........++ .-...+ +++.||.++-|. .
T Consensus 12 ~~~L~~~l~~l~~~~~l~~IvVvWn~~~~~P~~~~~~~~~vpV~~~~~~~nsLnnRF-~p~~~i--~T~AVl~~DDDv-~ 87 (247)
T PF09258_consen 12 SDLLKRLLRHLASSPSLRKIVVVWNNPNPPPPSSKWPSTGVPVRVVRSSRNSLNNRF-LPDPEI--ETDAVLSLDDDV-M 87 (247)
T ss_dssp HHHHHHHHHHHTTSTTEEEEEEEEE-TS--THHHHHT---S-EEEEEESSHHGGGGG-S--TT----SSEEEEEETTE-E
T ss_pred hHHHHHHHHHHHcCCCCCeEEEEeCCCCCCCcccccCCCCceEEEEecCCccHHhcC-cCcccc--CcceEEEecCCc-c
Confidence 4788899999999999999998864321 10 111122344432211110111122 112233 478999999997 7
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEEeeee
Q 028257 151 IEPEIIDGVVKALQAAPDAVFSTAVTS 177 (211)
Q Consensus 151 i~~~~i~~li~~~~~~~d~vv~v~~~~ 177 (211)
++.+.++...+.+++++|.+++.....
T Consensus 88 ~~~~~l~faF~~W~~~pdrlVGf~~R~ 114 (247)
T PF09258_consen 88 LSCDELEFAFQVWREFPDRLVGFPPRS 114 (247)
T ss_dssp E-HHHHHHHHHHHCCSTTSEEES-EEE
T ss_pred cCHHHHHHHHHHHHhChhheeCCccce
Confidence 899999999999999999999977544
No 174
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=73.02 E-value=45 Score=28.05 Aligned_cols=106 Identities=10% Similarity=0.080 Sum_probs=66.0
Q ss_pred EEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCCeEEEEcC-cHHHHHHHHHc---CCeE-eeCCcccCCChH
Q 028257 51 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATD-DEKIAECCQQF---GADV-IMTSESCRNGTE 125 (211)
Q Consensus 51 ~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~-~e~i~~~~~~~---~v~v-i~~~~~~~g~~~ 125 (211)
..+++|-|.-..|..+.. -+.-..++...+..+.. + .++-|+++ .+++....+++ +.++ +....++.+..+
T Consensus 90 ~illlCTG~F~~l~~~~~-lleP~ril~~lV~al~~--~-~~vGVivP~~eQ~~~~~~kW~~l~~~~~~a~asPy~~~~~ 165 (221)
T PF07302_consen 90 VILLLCTGEFPGLTARNP-LLEPDRILPPLVAALVG--G-HQVGVIVPLPEQIAQQAEKWQPLGNPVVVAAASPYEGDEE 165 (221)
T ss_pred EEEEeccCCCCCCCCCcc-eeehHHhHHHHHHHhcC--C-CeEEEEecCHHHHHHHHHHHHhcCCCeEEEEeCCCCCCHH
Confidence 367778888777765443 56667899999998864 2 58878776 44555455443 3333 222235656667
Q ss_pred HHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHH
Q 028257 126 RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL 163 (211)
Q Consensus 126 si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~ 163 (211)
.+..|.+.+....-.+++++|=- ++. ..++++++.
T Consensus 166 ~l~~Aa~~L~~~gadlIvLDCmG--Yt~-~~r~~~~~~ 200 (221)
T PF07302_consen 166 ELAAAARELAEQGADLIVLDCMG--YTQ-EMRDIVQRA 200 (221)
T ss_pred HHHHHHHHHHhcCCCEEEEECCC--CCH-HHHHHHHHH
Confidence 77777777754455678888864 444 344444443
No 175
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=69.20 E-value=28 Score=28.81 Aligned_cols=55 Identities=18% Similarity=0.329 Sum_probs=36.9
Q ss_pred CCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCe-EEEEeeee
Q 028257 121 RNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDA-VFSTAVTS 177 (211)
Q Consensus 121 ~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~-vv~v~~~~ 177 (211)
.+..+....|++.. +.++.+++.-|.-+.+...+..+++.+++.++. ++++.-.+
T Consensus 40 ~s~~~~yN~a~~~a--~~~ylvflHqDv~i~~~~~l~~il~~~~~~~~~G~iGvaG~~ 95 (217)
T PF13712_consen 40 KSMAAAYNEAMEKA--KAKYLVFLHQDVFIINENWLEDILEIFEEDPNIGMIGVAGSK 95 (217)
T ss_dssp S-TTTHHHHHGGG----SSEEEEEETTEE-SSHHHHHHHHHHHHH-TTEEEEESEEEE
T ss_pred cCHHHHHHHHHHhC--CCCEEEEEeCCeEEcchhHHHHHHHHHhhCCCccEEEeecCC
Confidence 34455666777775 578999999999888999999999999655553 44544333
No 176
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=68.22 E-value=20 Score=28.58 Aligned_cols=39 Identities=23% Similarity=0.385 Sum_probs=32.8
Q ss_pred HHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh
Q 028257 125 ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 165 (211)
Q Consensus 125 ~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~ 165 (211)
..+..++++ ..++|++++.|+|. .++++.+++++..+.+
T Consensus 20 ~nL~~~~~~-~a~~d~~~~~DsDi-~v~p~~L~~lv~~l~~ 58 (175)
T PF13506_consen 20 NNLAQGLEA-GAKYDYLVISDSDI-RVPPDYLRELVAPLAD 58 (175)
T ss_pred HHHHHHHHh-hCCCCEEEEECCCe-eECHHHHHHHHHHHhC
Confidence 456777776 23689999999999 8999999999999875
No 177
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=68.17 E-value=80 Score=27.37 Aligned_cols=91 Identities=10% Similarity=0.146 Sum_probs=53.7
Q ss_pred EEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCC-CCCeEEEEcCcHHHHHHHHHcCCeEeeCCccc--CCCh-HHH
Q 028257 52 GIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLAT-TLDHLVVATDDEKIAECCQQFGADVIMTSESC--RNGT-ERC 127 (211)
Q Consensus 52 aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~-~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~--~g~~-~si 127 (211)
..|++-|.|+ -++..+++.+... ..+-+.|++|.+....++++++++++..+... .... ..+
T Consensus 92 i~vl~Sg~gs--------------nl~al~~~~~~~~~~~~i~~visn~~~~~~lA~~~gIp~~~~~~~~~~~~~~~~~~ 157 (286)
T PRK06027 92 VVILVSKEDH--------------CLGDLLWRWRSGELPVEIAAVISNHDDLRSLVERFGIPFHHVPVTKETKAEAEARL 157 (286)
T ss_pred EEEEEcCCCC--------------CHHHHHHHHHcCCCCcEEEEEEEcChhHHHHHHHhCCCEEEeccCccccchhHHHH
Confidence 5667766655 3455666665522 23344566788788888899999886533211 1111 234
Q ss_pred HHHHHhhccCCCEEEEEcCCCcCCCHHHHHHH
Q 028257 128 NEALQKLEKKYDIVVNIQGDEPLIEPEIIDGV 159 (211)
Q Consensus 128 ~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~l 159 (211)
...++... . .++++.+=+..++++.++..
T Consensus 158 ~~~l~~~~--~-Dlivlagy~~il~~~~l~~~ 186 (286)
T PRK06027 158 LELIDEYQ--P-DLVVLARYMQILSPDFVARF 186 (286)
T ss_pred HHHHHHhC--C-CEEEEecchhhcCHHHHhhc
Confidence 44455542 3 45677777778888777754
No 178
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=68.12 E-value=43 Score=32.12 Aligned_cols=37 Identities=19% Similarity=0.415 Sum_probs=31.3
Q ss_pred hccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEE
Q 028257 134 LEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171 (211)
Q Consensus 134 l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv 171 (211)
-...+++.+|+++|. ..+.+.+-.+++..+.++|+=+
T Consensus 237 wG~~Y~~MlVLDADS-vMtgd~lvrLv~~ME~~P~aGl 273 (736)
T COG2943 237 WGSAYSYMLVLDADS-VMTGDCLVRLVRLMEANPDAGL 273 (736)
T ss_pred hCcccceEEEeeccc-ccCchHHHHHHHHHhhCCCCce
Confidence 334578999999999 8999999999999988887643
No 179
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=66.96 E-value=77 Score=26.78 Aligned_cols=86 Identities=9% Similarity=0.005 Sum_probs=53.1
Q ss_pred ehHHHHHHHHHcCCCCCeEEEEcCc-----HHHHHHHHHcCCeEeeCC-cccC-------CChHHHHHHHHhhc-cCCCE
Q 028257 75 PMIQRTWERSKLATTLDHLVVATDD-----EKIAECCQQFGADVIMTS-ESCR-------NGTERCNEALQKLE-KKYDI 140 (211)
Q Consensus 75 pLl~~~i~~l~~~~~id~IVVvt~~-----e~i~~~~~~~~v~vi~~~-~~~~-------g~~~si~~al~~l~-~~~d~ 140 (211)
+-..-+++.|+.. ++.+|.|+|+. +.+.++.++.|+++.-.. -... -..+++..++..+. .+.|-
T Consensus 106 t~~~A~~~AL~al-g~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDA 184 (239)
T TIGR02990 106 TPSSAAVDGLAAL-GVRRISLLTPYTPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADA 184 (239)
T ss_pred CHHHHHHHHHHHc-CCCEEEEECCCcHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCE
Confidence 4556777888877 69999999973 455566777788874321 0010 11245555555543 23454
Q ss_pred EEEEcCCCcCCCHHHHHHHHHHH
Q 028257 141 VVNIQGDEPLIEPEIIDGVVKAL 163 (211)
Q Consensus 141 vlv~~~D~Pli~~~~i~~li~~~ 163 (211)
+++.|+. +.+.+.++.+-+.+
T Consensus 185 -ifisCTn-Lrt~~vi~~lE~~l 205 (239)
T TIGR02990 185 -LFLSCTA-LRAATCAQRIEQAI 205 (239)
T ss_pred -EEEeCCC-chhHHHHHHHHHHH
Confidence 4555777 77888877776665
No 180
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=65.25 E-value=1.5e+02 Score=29.38 Aligned_cols=96 Identities=11% Similarity=0.097 Sum_probs=53.2
Q ss_pred cCCeehHHHHHHHHH-cCCCC-CeEEEEc--CcHH----HHHHHHHc-CCeEeeCCccc-CCChHHHHHHHHhh------
Q 028257 71 ILGKPMIQRTWERSK-LATTL-DHLVVAT--DDEK----IAECCQQF-GADVIMTSESC-RNGTERCNEALQKL------ 134 (211)
Q Consensus 71 l~GkpLl~~~i~~l~-~~~~i-d~IVVvt--~~e~----i~~~~~~~-~v~vi~~~~~~-~g~~~si~~al~~l------ 134 (211)
++..-.|..+++.+. +...- .+|+|++ |+.+ ++.....+ .++++..+... +|....+..++..+
T Consensus 80 ~nE~~VI~~~v~~ll~~ldYp~~~I~v~~~~nD~~T~~~~~~~~~~~p~~~~v~~~~~gp~gKa~ALN~~l~~~~~~e~~ 159 (703)
T PRK15489 80 WKEYDVIAKMIENMLATLDYRRYVIFVGTYPNDAETITEVERMRRRYKRLVRVEVPHDGPTCKADCLNWIIQAIFRYEAG 159 (703)
T ss_pred CCcHHHHHHHHHHHHhcCCCCCeEEEEEecCCCccHHHHHHHHhccCCcEEEEEcCCCCCCCHHHHHHHHHHHHHhhhhh
Confidence 466778889998853 32221 2555543 4322 22333333 23444444332 23345566666654
Q ss_pred -ccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCC
Q 028257 135 -EKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168 (211)
Q Consensus 135 -~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d 168 (211)
..+.+.++++|+|. .++|..++.+ +.+....+
T Consensus 160 ~~~~fa~vvi~DAEd-~~~P~~L~~~-~~~~~~~~ 192 (703)
T PRK15489 160 HGIEFAGVILHDSED-VLHPLELKYF-NYLLPRKD 192 (703)
T ss_pred ccCccceEEEEcCCC-CCChhHHHHH-HhhcCCcc
Confidence 11345689999999 8999999866 44433334
No 181
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=62.80 E-value=81 Score=25.79 Aligned_cols=80 Identities=16% Similarity=0.187 Sum_probs=39.3
Q ss_pred ehHHHHHHHHHcCCCCCeEE-EEcCc--HHHHHHHHHcCCeEeeC-CcccCCC---hHHHHHHHHhhccCCCEEEEEcCC
Q 028257 75 PMIQRTWERSKLATTLDHLV-VATDD--EKIAECCQQFGADVIMT-SESCRNG---TERCNEALQKLEKKYDIVVNIQGD 147 (211)
Q Consensus 75 pLl~~~i~~l~~~~~id~IV-Vvt~~--e~i~~~~~~~~v~vi~~-~~~~~g~---~~si~~al~~l~~~~d~vlv~~~D 147 (211)
++++..++++.+....-+|+ |+++. ....+++++.+++++.. +....+. ...+...++.. +.|. +++.+-
T Consensus 13 s~~~~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~--~~D~-iv~~~~ 89 (200)
T PRK05647 13 SNLQAIIDACAAGQLPAEIVAVISDRPDAYGLERAEAAGIPTFVLDHKDFPSREAFDAALVEALDAY--QPDL-VVLAGF 89 (200)
T ss_pred hhHHHHHHHHHcCCCCcEEEEEEecCccchHHHHHHHcCCCEEEECccccCchhHhHHHHHHHHHHh--CcCE-EEhHHh
Confidence 34556666666543222444 44553 34566778889887542 2222111 12334445444 2444 344444
Q ss_pred CcCCCHHHHH
Q 028257 148 EPLIEPEIID 157 (211)
Q Consensus 148 ~Pli~~~~i~ 157 (211)
+..++++.++
T Consensus 90 ~~ii~~~~l~ 99 (200)
T PRK05647 90 MRILGPTFVS 99 (200)
T ss_pred hhhCCHHHHh
Confidence 4466666655
No 182
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=57.81 E-value=89 Score=27.08 Aligned_cols=91 Identities=13% Similarity=0.135 Sum_probs=53.1
Q ss_pred EEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCC-CCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCCC--h-HHH
Q 028257 52 GIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLAT-TLDHLVVATDDEKIAECCQQFGADVIMTSESCRNG--T-ERC 127 (211)
Q Consensus 52 aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~-~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g~--~-~si 127 (211)
..|++-|.|+ =++..+++.+... ..+-..|++|.+....++++++++++..+....+. . ..+
T Consensus 87 i~vl~Sg~g~--------------nl~~l~~~~~~g~l~~~i~~visn~~~~~~~A~~~gIp~~~~~~~~~~~~~~e~~~ 152 (280)
T TIGR00655 87 VAILVSKEDH--------------CLGDLLWRWYSGELDAEIALVISNHEDLRSLVERFGIPFHYIPATKDNRVEHEKRQ 152 (280)
T ss_pred EEEEEcCCCh--------------hHHHHHHHHHcCCCCcEEEEEEEcChhHHHHHHHhCCCEEEcCCCCcchhhhHHHH
Confidence 4667777665 3455666666432 13344566788888888899999886544321111 1 233
Q ss_pred HHHHHhhccCCCEEEEEcCCCcCCCHHHHHHH
Q 028257 128 NEALQKLEKKYDIVVNIQGDEPLIEPEIIDGV 159 (211)
Q Consensus 128 ~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~l 159 (211)
...++.. +. .++++.+=+..++++.++..
T Consensus 153 ~~~l~~~--~~-Dlivlagym~il~~~~l~~~ 181 (280)
T TIGR00655 153 LELLKQY--QV-DLVVLAKYMQILSPDFVKRY 181 (280)
T ss_pred HHHHHHh--CC-CEEEEeCchhhCCHHHHhhc
Confidence 4444443 23 35677777777777766644
No 183
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=53.46 E-value=71 Score=21.96 Aligned_cols=48 Identities=33% Similarity=0.425 Sum_probs=35.6
Q ss_pred HHHHHHHHHcCCeEeeCCcccCCChHHHHHHHHhhccCCCEEEEEcCCCcC
Q 028257 100 EKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPL 150 (211)
Q Consensus 100 e~i~~~~~~~~v~vi~~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pl 150 (211)
|.+..+++.+|+..+..+ ..+|+..++...++.+. ....+.+.+|=|-
T Consensus 23 e~ia~~~~~~G~~~iRGS-s~rgg~~Alr~~~~~lk--~G~~~~itpDGPr 70 (74)
T PF04028_consen 23 ELIARVLERFGFRTIRGS-SSRGGARALREMLRALK--EGYSIAITPDGPR 70 (74)
T ss_pred HHHHHHHHHcCCCeEEeC-CCCcHHHHHHHHHHHHH--CCCeEEEeCCCCC
Confidence 556677889999887765 45677888888888885 3456677888763
No 184
>TIGR03715 KxYKxGKxW KxYKxGKxW signal peptide. This model describes a novel form of signal peptide that occurs as an N-terminal domain with a recognizable motif, reminiscent of the YSIRK and PEP-CTERM forms of signal peptide. This domain tends to occur on long, low-complexity (usually Serine-rich and heavily glycosylated) proteins of the Firmicutes, and (as with YSIRK) the majority of these proteins have the LPXTG cell wall-anchoring motif at the C-terminus.
Probab=53.44 E-value=8.8 Score=21.45 Aligned_cols=12 Identities=33% Similarity=0.728 Sum_probs=10.3
Q ss_pred CchhHHHHHHhh
Q 028257 15 STKSWIVHGIVA 26 (211)
Q Consensus 15 ~~~~~~~~~~~~ 26 (211)
|||.|+.+.+.+
T Consensus 9 sGK~Wv~a~~~~ 20 (29)
T TIGR03715 9 SGKQWVFAAITT 20 (29)
T ss_pred cccHHHHHHHHH
Confidence 699999998875
No 185
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=52.08 E-value=1.4e+02 Score=24.79 Aligned_cols=94 Identities=18% Similarity=0.172 Sum_probs=56.8
Q ss_pred EEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCC-eE-EEEcCc--HHHHHHHHHcCCeEe-eCCcccCCCh--
Q 028257 52 GIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLD-HL-VVATDD--EKIAECCQQFGADVI-MTSESCRNGT-- 124 (211)
Q Consensus 52 aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id-~I-VVvt~~--e~i~~~~~~~~v~vi-~~~~~~~g~~-- 124 (211)
.+|++-|.|| -++..++++... .++ +| .|++|. ..-.+.+++.++... ...+.+.+..
T Consensus 3 i~VlaSG~GS--------------Nlqaiida~~~~-~~~a~i~~Visd~~~A~~lerA~~~gIpt~~~~~k~~~~r~~~ 67 (200)
T COG0299 3 IAVLASGNGS--------------NLQAIIDAIKGG-KLDAEIVAVISDKADAYALERAAKAGIPTVVLDRKEFPSREAF 67 (200)
T ss_pred EEEEEeCCcc--------------cHHHHHHHHhcC-CCCcEEEEEEeCCCCCHHHHHHHHcCCCEEEeccccCCCHHHH
Confidence 4677777776 356677777742 332 34 344553 234456778888763 3444443321
Q ss_pred -HHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHH
Q 028257 125 -ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL 163 (211)
Q Consensus 125 -~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~ 163 (211)
..+...++.. ...++++.+=|-.++++.++.+-...
T Consensus 68 d~~l~~~l~~~---~~dlvvLAGyMrIL~~~fl~~~~grI 104 (200)
T COG0299 68 DRALVEALDEY---GPDLVVLAGYMRILGPEFLSRFEGRI 104 (200)
T ss_pred HHHHHHHHHhc---CCCEEEEcchHHHcCHHHHHHhhcce
Confidence 2344555544 34578999999999999888776544
No 186
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=50.66 E-value=1.3e+02 Score=24.30 Aligned_cols=103 Identities=17% Similarity=0.256 Sum_probs=58.1
Q ss_pred eEEEEcCcHH-----HHHHHHHcCCeEeeCCcccCCCh--HHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHH
Q 028257 92 HLVVATDDEK-----IAECCQQFGADVIMTSESCRNGT--ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ 164 (211)
Q Consensus 92 ~IVVvt~~e~-----i~~~~~~~~v~vi~~~~~~~g~~--~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~ 164 (211)
+++++|+-++ ++..+++.|.+++-.+.--+..+ .-+...++.. ..|.|+++--|.=+.....=+..+....
T Consensus 1 kVIlvTDGD~~A~ravE~aa~~iGgRCIS~S~GNPT~lsG~elV~lIk~a--~~DPV~VMfDD~G~~g~G~GE~Al~~v~ 78 (180)
T PF14097_consen 1 KVILVTDGDEYAKRAVEIAAKNIGGRCISQSAGNPTPLSGEELVELIKQA--PHDPVLVMFDDKGFIGEGPGEQALEYVA 78 (180)
T ss_pred CEEEEECChHHHHHHHHHHHHHhCcEEEeccCCCCCcCCHHHHHHHHHhC--CCCCEEEEEeCCCCCCCCccHHHHHHHH
Confidence 3678887443 34455678888865432211222 2344445554 4788999988888887766677776665
Q ss_pred hCCCe----EEEEee-eeCCCCCCCCCCCeEEEeCCCccEEe
Q 028257 165 AAPDA----VFSTAV-TSLKPEDAFDPNRVKCVVDNHGYAIY 201 (211)
Q Consensus 165 ~~~d~----vv~v~~-~~~~~~~~~d~~~~~~v~~~~~~~~~ 201 (211)
.+++- ++++.. |. ...+-.+-+..|.+|....
T Consensus 79 ~h~~IeVLG~iAVASnT~-----~~~g~~VD~sidr~G~~v~ 115 (180)
T PF14097_consen 79 NHPDIEVLGAIAVASNTH-----GAEGTKVDVSIDRDGEIVE 115 (180)
T ss_pred cCCCceEEEEEEEEecCC-----CCCceEeEEEEcCCCeEee
Confidence 55543 122221 11 1233345567777777553
No 187
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=47.81 E-value=80 Score=27.46 Aligned_cols=69 Identities=12% Similarity=0.181 Sum_probs=45.1
Q ss_pred CCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCCCh---HHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHH
Q 028257 90 LDHLVVATDDEKIAECCQQFGADVIMTSESCRNGT---ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVK 161 (211)
Q Consensus 90 id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g~~---~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~ 161 (211)
++-+.|++|++.++..++.+++++..-|-.-.... ..+...++.- .-.++|+.=-|-.++++..+++-.
T Consensus 118 ~eI~~VIsNH~dl~~~v~~~~IPfhhip~~~~~k~e~E~~~~~ll~~~---~~DlvVLARYMqILS~d~~~~~~g 189 (287)
T COG0788 118 AEIVAVISNHDDLRPLVERFDIPFHHIPVTKENKAEAEARLLELLEEY---GADLVVLARYMQILSPDFVERFPG 189 (287)
T ss_pred CceEEEEcCCHHHHHHHHHcCCCeeeccCCCCcchHHHHHHHHHHHHh---CCCEEeehhhHhhCCHHHHHhccC
Confidence 44556778899999999999998865543222222 2344444433 234677888888899988777653
No 188
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=42.37 E-value=87 Score=22.14 Aligned_cols=42 Identities=26% Similarity=0.491 Sum_probs=26.4
Q ss_pred CCeEEEEcC---c---HHHHHHHHHcCCeEeeCCcccCCChHHHHHHHHhh
Q 028257 90 LDHLVVATD---D---EKIAECCQQFGADVIMTSESCRNGTERCNEALQKL 134 (211)
Q Consensus 90 id~IVVvt~---~---e~i~~~~~~~~v~vi~~~~~~~g~~~si~~al~~l 134 (211)
.|=||+.|+ + ..+.+.++++++++++.. ..+..++..+|+.+
T Consensus 49 aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~---~~~~~~l~~~l~~~ 96 (97)
T PF10087_consen 49 ADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSR---SRGVSSLERALERL 96 (97)
T ss_pred CCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEEC---CCCHHHHHHHHHhh
Confidence 467777775 2 456667788888886642 13455666666643
No 189
>PF13684 Dak1_2: Dihydroxyacetone kinase family
Probab=40.85 E-value=97 Score=27.24 Aligned_cols=55 Identities=25% Similarity=0.376 Sum_probs=35.3
Q ss_pred eEEEEcCcHHHHHHHHHcCCeEeeCCcccCCC-hHHHHHHHHhhccCCCEEEEEcCCC
Q 028257 92 HLVVATDDEKIAECCQQFGADVIMTSESCRNG-TERCNEALQKLEKKYDIVVNIQGDE 148 (211)
Q Consensus 92 ~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g~-~~si~~al~~l~~~~d~vlv~~~D~ 148 (211)
-+|.++..+.+.++++.+|+..+.......++ ...+..|++.+ ..+.+++++.+.
T Consensus 98 ~vVAv~~g~g~~~lf~~~Gv~~vi~ggqt~nPS~~dl~~Ai~~~--~a~~VivLPNn~ 153 (313)
T PF13684_consen 98 GVVAVAPGEGLAELFRSLGVDVVISGGQTMNPSTEDLLNAIEKV--GADEVIVLPNNK 153 (313)
T ss_pred EEEEEecCccHHHHHHhCCCeEEEeCCCCCCCCHHHHHHHHHhC--CCCeEEEEeCCc
Confidence 34445566777888888887765543332233 35677777776 367788888775
No 190
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=40.74 E-value=54 Score=34.30 Aligned_cols=123 Identities=16% Similarity=0.210 Sum_probs=68.2
Q ss_pred ccccccCCe-ehHHHHHHHHHcCCCCCeEEEEcC----cHHHHHHHHHcCCeEeeCCcccCCChHHHHHHHHhhcc----
Q 028257 66 KPLVNILGK-PMIQRTWERSKLATTLDHLVVATD----DEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEK---- 136 (211)
Q Consensus 66 K~ll~l~Gk-pLl~~~i~~l~~~~~id~IVVvt~----~e~i~~~~~~~~v~vi~~~~~~~g~~~si~~al~~l~~---- 136 (211)
+.|+.=-|| -||...|-+|+.-++ +|.|-+. =+-+.+|+...+..+-..++..+|.+- .+|+++++.
T Consensus 676 ~~lI~sSGKlVLLDKLL~rLk~~GH--rVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelR--q~AIDhFnap~Sd 751 (1373)
T KOG0384|consen 676 QALIQSSGKLVLLDKLLPRLKEGGH--RVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELR--QQAIDHFNAPDSD 751 (1373)
T ss_pred HHHHHhcCcEEeHHHHHHHHhcCCc--eEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHH--HHHHHhccCCCCC
Confidence 444444454 567788888886542 4544443 144555554334443222222222111 245555431
Q ss_pred ------------------CCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEee--ee-CCCCCCCCCCCeEEEeC
Q 028257 137 ------------------KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAV--TS-LKPEDAFDPNRVKCVVD 194 (211)
Q Consensus 137 ------------------~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~--~~-~~~~~~~d~~~~~~v~~ 194 (211)
.+|.|+|++.| +=.+.+++++..+++-+....|-|.. |+ --+++.++|..+|.+.|
T Consensus 752 dFvFLLSTRAGGLGINLatADTVIIFDSD--WNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk~KmvLD 828 (1373)
T KOG0384|consen 752 DFVFLLSTRAGGLGINLATADTVIIFDSD--WNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAKLKMVLD 828 (1373)
T ss_pred ceEEEEecccCcccccccccceEEEeCCC--CCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHHHHhhhH
Confidence 24788889988 46789999999999754444444442 33 22456777777766654
No 191
>PF06306 CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (CgtA); InterPro: IPR010446 This family consists of several beta-1,4-N-acetylgalactosaminyltransferase proteins from Campylobacter jejuni [].
Probab=40.39 E-value=86 Score=28.01 Aligned_cols=110 Identities=15% Similarity=0.182 Sum_probs=60.7
Q ss_pred CCCcccccc-CCeehHHHHHHHHHcCCCCCeEEEEcC------cHHHHHHHHHcC--CeEee-------CCcccCCChHH
Q 028257 63 FEGKPLVNI-LGKPMIQRTWERSKLATTLDHLVVATD------DEKIAECCQQFG--ADVIM-------TSESCRNGTER 126 (211)
Q Consensus 63 lg~K~ll~l-~GkpLl~~~i~~l~~~~~id~IVVvt~------~e~i~~~~~~~~--v~vi~-------~~~~~~g~~~s 126 (211)
+++-+++.+ ++-.-|+.+|+.+.. .+++.|++-+ .|-+.++++++. +++.+ +++.....+.+
T Consensus 87 l~~~~~iRvKnE~~tl~~si~S~Lp--ai~~gVI~yNdc~D~t~Eiil~fckkyP~fip~~Ypy~v~~~n~~~~~n~l~~ 164 (347)
T PF06306_consen 87 LNPWAFIRVKNEAMTLAESIESILP--AIDEGVIGYNDCTDGTEEIILEFCKKYPSFIPIKYPYEVIIKNPKSEENSLYN 164 (347)
T ss_pred CCcceEEEEcchhhhHHHHHHHHHH--HHhccEEEeecCCCCHHHHHHHHHHhCcccccccCcchhhccCCchhhhhhhh
Confidence 445566677 446778888888875 4889988764 244556777654 22211 11111111122
Q ss_pred HHH-HHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeee
Q 028257 127 CNE-ALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTS 177 (211)
Q Consensus 127 i~~-al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~ 177 (211)
.++ ++..++ +++|++-++||+-+.+...+..+.-- .+..+ ++++++..
T Consensus 165 YYNy~ls~ip-k~~w~iKID~DhIy~~~KL~ksfY~p-k~~~~-~v~YsRIN 213 (347)
T PF06306_consen 165 YYNYVLSFIP-KNEWAIKIDADHIYDTKKLYKSFYIP-KNDYD-VVSYSRIN 213 (347)
T ss_pred hhhhhhcccc-cceEEEEeccceeecHHHHhhhheee-ccccc-eEEeccee
Confidence 222 333333 57899999999988777654433221 22223 44555443
No 192
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=39.94 E-value=2.7e+02 Score=24.81 Aligned_cols=87 Identities=17% Similarity=0.189 Sum_probs=50.3
Q ss_pred eehHHHHHHHHHcCCCCCeEEEEcC-cHHHHHHHHHcCCeEeeCCcc-cCCChHHHHHHHHhhccCCCEEEEEcCCCc--
Q 028257 74 KPMIQRTWERSKLATTLDHLVVATD-DEKIAECCQQFGADVIMTSES-CRNGTERCNEALQKLEKKYDIVVNIQGDEP-- 149 (211)
Q Consensus 74 kpLl~~~i~~l~~~~~id~IVVvt~-~e~i~~~~~~~~v~vi~~~~~-~~g~~~si~~al~~l~~~~d~vlv~~~D~P-- 149 (211)
.-+|+..++.+... + |.+++... .......++..|++++..+.. ..-..+.+..++.. +.+.++++....|
T Consensus 85 de~i~~l~~~~~~~-g-d~vl~~~Ptf~~Y~~~a~~~g~~~~~v~~~~~~~d~~~~~~~~~~---~~~lv~i~nPNNPTG 159 (356)
T COG0079 85 DELIELLVRAFVEP-G-DTVLIPEPTFSMYEIAAQLAGAEVVKVPLKEFRLDLDAILAAIRD---KTKLVFLCNPNNPTG 159 (356)
T ss_pred HHHHHHHHHHhhcC-C-CEEEEcCCChHHHHHHHHhcCCeEEEecccccccCHHHHHHhhhc---CCCEEEEeCCCCCCC
Confidence 35666666666543 2 55555543 344455555667665443321 11222344443332 4678999988888
Q ss_pred -CCCHHHHHHHHHHHHh
Q 028257 150 -LIEPEIIDGVVKALQA 165 (211)
Q Consensus 150 -li~~~~i~~li~~~~~ 165 (211)
+++.+.+..+++....
T Consensus 160 ~~~~~~~l~~l~~~~~~ 176 (356)
T COG0079 160 TLLPREELRALLEALPE 176 (356)
T ss_pred CCCCHHHHHHHHHhCCC
Confidence 5788888888877644
No 193
>PF09292 Neil1-DNA_bind: Endonuclease VIII-like 1, DNA bind; InterPro: IPR015371 This domain is predominantly found in Endonuclease VIII-like 1 proteins and adopts a glucocorticoid receptor-like fold. Structural analysis reveals a zincless finger motif that is required for glycosylase activity []. ; PDB: 1TDH_A.
Probab=39.56 E-value=40 Score=20.22 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=14.3
Q ss_pred CeEEEeCCCccEEeeecCCCCC
Q 028257 188 RVKCVVDNHGYAIYFSRGLIPY 209 (211)
Q Consensus 188 ~~~~v~~~~~~~~~~~~~~~~~ 209 (211)
..+..+|.+|+.++|+-++.|.
T Consensus 16 gM~sl~D~~gRTiWFqGdPGpl 37 (39)
T PF09292_consen 16 GMKSLRDRNGRTIWFQGDPGPL 37 (39)
T ss_dssp T-EEEE-TTS-EEEESS---TT
T ss_pred ccccccccCCCEEEeeCCCCCC
Confidence 5788999999999999998875
No 194
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=38.29 E-value=1.8e+02 Score=23.55 Aligned_cols=69 Identities=23% Similarity=0.307 Sum_probs=34.2
Q ss_pred CCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHH
Q 028257 90 LDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL 163 (211)
Q Consensus 90 id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~ 163 (211)
+++|+||=+.+....+-+-++++++...... -......-++.+....+.++++++|.| -+-|+..+...
T Consensus 2 IkevIVVEGK~D~~~lk~~~d~~~I~T~Gs~--i~~~~i~~i~~~~~~rgVIIfTDpD~~---GekIRk~i~~~ 70 (174)
T TIGR00334 2 IKEIIVVEGKDDQARIKQAFDVDVIETNGSA--LKDETINLIKKAQKKQGVIILTDPDFP---GEKIRKKIEQH 70 (174)
T ss_pred CCeEEEEecchHHHHHHHhcCceEEEECCCc--cCHHHHHHHHHHhhcCCEEEEeCCCCc---hHHHHHHHHHH
Confidence 5577777554444444444456666543211 011122222222223567777788765 45666666553
No 195
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=37.96 E-value=87 Score=29.08 Aligned_cols=63 Identities=13% Similarity=0.172 Sum_probs=43.2
Q ss_pred CCcEEEEEecCCCCCCCC---Ccccccc-CCeehHHHHHHHHHcC---CCCCe-EEEEcC---cHHHHHHHHHc
Q 028257 47 RSRVVGIIPARFASSRFE---GKPLVNI-LGKPMIQRTWERSKLA---TTLDH-LVVATD---DEKIAECCQQF 109 (211)
Q Consensus 47 ~m~i~aIIlA~G~ssRlg---~K~ll~l-~GkpLl~~~i~~l~~~---~~id~-IVVvt~---~e~i~~~~~~~ 109 (211)
-.|++.+=|-||-|+-|| +|.+.++ +|.+++.-++++++.. -.+|- .|+..+ +++...+.++|
T Consensus 101 L~KLavlKLNGGlGttmGc~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~dVPlvLMNSfnTdedT~kil~ky 174 (498)
T KOG2638|consen 101 LNKLAVLKLNGGLGTTMGCKGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVDVPLVLMNSFNTDEDTQKILKKY 174 (498)
T ss_pred hhheEEEEecCCcCCccccCCCceeEEEcCCCchhHHHHHHHHHHHhhcCCCCCEEEecccccchHHHHHHHHh
Confidence 346788889999999997 6999999 6899998777766532 23443 333332 45566666554
No 196
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=37.52 E-value=2.5e+02 Score=23.68 Aligned_cols=83 Identities=13% Similarity=0.051 Sum_probs=48.7
Q ss_pred HHHHHHHHcCCCCCeEEEEcCc-----HHHHHHHHHcCCeEeeCC-----ccc-CC---ChHHHHHHHHhhccCCCEEEE
Q 028257 78 QRTWERSKLATTLDHLVVATDD-----EKIAECCQQFGADVIMTS-----ESC-RN---GTERCNEALQKLEKKYDIVVN 143 (211)
Q Consensus 78 ~~~i~~l~~~~~id~IVVvt~~-----e~i~~~~~~~~v~vi~~~-----~~~-~g---~~~si~~al~~l~~~~d~vlv 143 (211)
.-+++.|+.. +..+|.|.|+. +.-.++++..|++++.-. ++. -| +-.-+..|.+....+.|.+++
T Consensus 107 ~Avv~aL~al-~a~ri~vlTPY~~evn~~e~ef~~~~Gfeiv~~~~Lgi~dn~eigr~~P~~~y~lAk~~~~~~~DaiFi 185 (238)
T COG3473 107 TAVVEALNAL-GAQRISVLTPYIDEVNQREIEFLEANGFEIVDFKGLGITDNLEIGRQEPWAVYRLAKEVFTPDADAIFI 185 (238)
T ss_pred HHHHHHHHhh-CcceEEEeccchhhhhhHHHHHHHhCCeEEEEeeccCCcccchhcccChHHHHHHHHHhcCCCCCeEEE
Confidence 3567777766 58899999962 233456777788764211 111 01 222234444444445666554
Q ss_pred EcCCCcCCCHHHHHHHHHHH
Q 028257 144 IQGDEPLIEPEIIDGVVKAL 163 (211)
Q Consensus 144 ~~~D~Pli~~~~i~~li~~~ 163 (211)
.|.+ +.+.+.|..+-+..
T Consensus 186 -SCTn-lRt~eii~~lE~~~ 203 (238)
T COG3473 186 -SCTN-LRTFEIIEKLERDT 203 (238)
T ss_pred -Eeec-cccHHHHHHHHHHh
Confidence 4887 88888888776554
No 197
>PRK00865 glutamate racemase; Provisional
Probab=37.29 E-value=1.9e+02 Score=24.43 Aligned_cols=63 Identities=21% Similarity=0.073 Sum_probs=35.7
Q ss_pred hhhceeehc--ccCCCCCCcEEEEEecCCCCCCCC--CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHH
Q 028257 32 VAVGARAYL--GRSKNFRSRVVGIIPARFASSRFE--GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEK 101 (211)
Q Consensus 32 ~~~~~~~~~--~~~~~~~m~i~aIIlA~G~ssRlg--~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~ 101 (211)
-|+||+-.+ -|++-+..+ .|-+| -..|+| .|.--.+. ..+...++.|.+. ++|-|+|.++..+
T Consensus 13 SGiGGLtvl~~i~~~lp~~~--~iY~~--D~~~~PYG~ks~~~i~--~~~~~~~~~L~~~-g~d~iVIaCNTa~ 79 (261)
T PRK00865 13 SGVGGLTVLREIRRLLPDEH--IIYVG--DTARFPYGEKSEEEIR--ERTLEIVEFLLEY-GVKMLVIACNTAS 79 (261)
T ss_pred CCccHHHHHHHHHHHCCCCC--EEEEe--cCCCCCCCCCCHHHHH--HHHHHHHHHHHhC-CCCEEEEeCchHH
Confidence 588888666 333333333 33333 344443 34444333 4455666777765 6888999888543
No 198
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=37.04 E-value=3.6e+02 Score=25.32 Aligned_cols=54 Identities=7% Similarity=0.142 Sum_probs=37.1
Q ss_pred HHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeeeCCC
Q 028257 125 ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKP 180 (211)
Q Consensus 125 ~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~~~~ 180 (211)
.++..|++.++ .++.+|+++.|+ -++++.++++-.....+..+.+++.....++
T Consensus 330 ~~Ld~g~~~~~-~d~L~f~~Dvd~-~f~~~fL~rcR~nti~g~qvy~PI~Fs~y~p 383 (499)
T PF05679_consen 330 AALDVGAKKFP-PDSLLFFCDVDM-VFTSDFLNRCRMNTIPGKQVYFPIVFSQYNP 383 (499)
T ss_pred HHHHhhcccCC-CCcEEEEEeCCc-ccCHHHHHHHHHhhhcCcEEEEeeeccccCC
Confidence 34556666664 467899999999 7899999998776655444555655544443
No 199
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=36.94 E-value=2.8e+02 Score=25.08 Aligned_cols=92 Identities=18% Similarity=0.230 Sum_probs=54.6
Q ss_pred hHHHHHHHHHcCCCCCeEEEEcC-----cHHHHHHHHHcCCeEeeCCcccCCChHHHHHHHHhhccCCCEEEEEcCCCcC
Q 028257 76 MIQRTWERSKLATTLDHLVVATD-----DEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPL 150 (211)
Q Consensus 76 Ll~~~i~~l~~~~~id~IVVvt~-----~e~i~~~~~~~~v~vi~~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pl 150 (211)
=+..++..+.+.+ |+|++..+ ...+..++..+++++.+.+. ...+.+..+++. +...+++=....|+
T Consensus 82 Ai~~~l~~ll~~G--d~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~d~---~d~~~l~~~l~~---~t~~v~~EspsNP~ 153 (386)
T PF01053_consen 82 AISAALLALLKPG--DHIVASDDLYGGTYRLLEELLPRFGVEVTFVDP---TDLEALEAALRP---NTKLVFLESPSNPT 153 (386)
T ss_dssp HHHHHHHHHS-TT--BEEEEESSSSHHHHHHHHHCHHHTTSEEEEEST---TSHHHHHHHHCT---TEEEEEEESSBTTT
T ss_pred HHHHHHHhhcccC--CceEecCCccCcchhhhhhhhcccCcEEEEeCc---hhHHHHHhhccc---cceEEEEEcCCCcc
Confidence 3445566665542 56555543 23344455677888744321 345556555553 45688888999999
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEEee
Q 028257 151 IEPEIIDGVVKALQAAPDAVFSTAV 175 (211)
Q Consensus 151 i~~~~i~~li~~~~~~~d~vv~v~~ 175 (211)
+..-+|..+.+..++..+..+.+-.
T Consensus 154 l~v~Dl~~i~~~a~~~g~~~~vVDn 178 (386)
T PF01053_consen 154 LEVPDLEAIAKLAKEHGDILVVVDN 178 (386)
T ss_dssp TB---HHHHHHHHHHTTT-EEEEEC
T ss_pred cccccHHHHHHHHHHhCCceEEeec
Confidence 9999999999988765446666553
No 200
>COG2121 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.88 E-value=1.6e+02 Score=24.67 Aligned_cols=65 Identities=23% Similarity=0.279 Sum_probs=44.3
Q ss_pred CeEEEEcC----cHHHHHHHHHcCCeEeeCCcccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHH
Q 028257 91 DHLVVATD----DEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDG 158 (211)
Q Consensus 91 d~IVVvt~----~e~i~~~~~~~~v~vi~~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~ 158 (211)
.++++..+ -|.+...++++|.+++..+. ..|+..++.+.++.+.+ ..-+.+.+|-|--....+.+
T Consensus 68 ~~~~amvS~s~DGEliA~~l~kfG~~~IRGSs-~Kgg~~Alr~l~k~Lk~--G~~i~itpDgPkGp~~~~~~ 136 (214)
T COG2121 68 KKIYAMVSPSRDGELIARLLEKFGLRVIRGSS-NKGGISALRALLKALKQ--GKSIAITPDGPKGPVHKIGD 136 (214)
T ss_pred CcEEEEEcCCcCHHHHHHHHHHcCceEEeccC-CcchHHHHHHHHHHHhC--CCcEEEcCCCCCCCceeccc
Confidence 34655442 35666778999999888764 46777888888888853 23467778887755555543
No 201
>TIGR03599 YloV DAK2 domain fusion protein YloV. This model describes a protein family that contains an N-terminal DAK2 domain (pfam02734), so named because of similarity to the dihydroxyacetone kinase family family. The GTP-binding protein CgtA (a member of the obg family) is a bacterial GTPase associated with ribosome biogenesis, and it has a characteristic extension (TIGR03595) in certain lineages. This protein family described here was found, by the method of partial phylognetic profiling, to have a phylogenetic distribution strongly correlated to that of TIGR03595. This correlation implies some form of functional coupling.
Probab=36.09 E-value=3e+02 Score=26.16 Aligned_cols=54 Identities=28% Similarity=0.382 Sum_probs=38.0
Q ss_pred EEEEcCcHHHHHHHHHcCCeEeeCCcccCCC-hHHHHHHHHhhccCCCEEEEEcCCC
Q 028257 93 LVVATDDEKIAECCQQFGADVIMTSESCRNG-TERCNEALQKLEKKYDIVVNIQGDE 148 (211)
Q Consensus 93 IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g~-~~si~~al~~l~~~~d~vlv~~~D~ 148 (211)
+|.++..+.+.++++.+|+.++..-...-++ +..+..+++.++ .+.|+++|-+.
T Consensus 317 ivAv~~g~g~~~~f~~~Ga~~vi~ggqt~nPS~~dll~ai~~~~--a~~V~iLPNn~ 371 (530)
T TIGR03599 317 IVAVAPGEGIAELFKSLGADVVIEGGQTMNPSTEDILKAIEKVN--AKNVFVLPNNK 371 (530)
T ss_pred EEEEcCCchHHHHHHHCCCCEEEeCCCCCCCCHHHHHHHHHhCC--CCeEEEecCCc
Confidence 4555567788888899999876533222233 456888888884 67899999883
No 202
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=36.00 E-value=56 Score=27.68 Aligned_cols=77 Identities=21% Similarity=0.190 Sum_probs=41.8
Q ss_pred hhhceeehcccCCCCCCcEEEEEecCCCCCCCC--CccccccCCeehHHHHHHHHH-cCCCCCeEEEEcCcHH---HHHH
Q 028257 32 VAVGARAYLGRSKNFRSRVVGIIPARFASSRFE--GKPLVNILGKPMIQRTWERSK-LATTLDHLVVATDDEK---IAEC 105 (211)
Q Consensus 32 ~~~~~~~~~~~~~~~~m~i~aIIlA~G~ssRlg--~K~ll~l~GkpLl~~~i~~l~-~~~~id~IVVvt~~e~---i~~~ 105 (211)
-|+||+..++.=++.+++-..|-+| -..|+| +|.--.+. +.+...++.|. +. +++-+++.+|..+ +.++
T Consensus 6 SGiGGltv~~~l~~~~p~~~~iy~~--D~~~~PYG~ks~~~i~--~~~~~~~~~L~~~~-g~d~ivIaCNTA~a~~~~~l 80 (251)
T TIGR00067 6 SGVGGLSVLKEIRKQLPKEHYIYVG--DTKRFPYGEKSPEFIL--EYVLELLTFLKERH-NIKLLVVACNTASALALEDL 80 (251)
T ss_pred CCccHHHHHHHHHHHCCCCCEEEEe--cCCCCCCCCCCHHHHH--HHHHHHHHHHHHhC-CCCEEEEeCchHHHHHHHHH
Confidence 4788887763322222222223333 334443 44444333 56667788887 65 6899999998544 3333
Q ss_pred HHHcCCeE
Q 028257 106 CQQFGADV 113 (211)
Q Consensus 106 ~~~~~v~v 113 (211)
-+.+++++
T Consensus 81 ~~~~~iPi 88 (251)
T TIGR00067 81 QRNFDFPV 88 (251)
T ss_pred HHHCCCCE
Confidence 33445444
No 203
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=35.40 E-value=1.1e+02 Score=27.13 Aligned_cols=34 Identities=12% Similarity=0.093 Sum_probs=25.2
Q ss_pred cCCCCCCcEEEE--EecCCCCCCCCCccccccCCeehHHHHHHHHHcC
Q 028257 42 RSKNFRSRVVGI--IPARFASSRFEGKPLVNILGKPMIQRTWERSKLA 87 (211)
Q Consensus 42 ~~~~~~m~i~aI--IlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~ 87 (211)
++.+...++..| |-+||.|+ .|++.|.++.+.+.
T Consensus 43 ~~~~~~~pvIsVGNi~vGGtGK------------TP~v~~L~~~l~~~ 78 (325)
T PRK00652 43 KPYRAPVPVIVVGNITVGGTGK------------TPVVIALAEQLQAR 78 (325)
T ss_pred cccCCCCCEEEEcCeeCCCCCh------------HHHHHHHHHHHHHC
Confidence 344444566667 77899888 69999999988864
No 204
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=34.28 E-value=40 Score=34.46 Aligned_cols=32 Identities=25% Similarity=0.236 Sum_probs=25.9
Q ss_pred EEEecCCCCCCCC-----CccccccC------CeehHHHHHHH
Q 028257 52 GIIPARFASSRFE-----GKPLVNIL------GKPMIQRTWER 83 (211)
Q Consensus 52 aIIlA~G~ssRlg-----~K~ll~l~------GkpLl~~~i~~ 83 (211)
.+|=|||.|+|+| .|.|.|+- |.+|.++.++.
T Consensus 95 lllHaGG~S~RlP~~s~~GK~f~p~P~~~~~~g~~l~~~~l~~ 137 (974)
T PRK13412 95 ILLHAGGQSRRLPGYAPSGKILTPVPVFRWERGQRLSQNLLSL 137 (974)
T ss_pred EEEecCCccccCccccccccccccCCccccCCCChhHHHHHHH
Confidence 5677999999998 39998883 88888877665
No 205
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=33.60 E-value=3.2e+02 Score=23.71 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=14.5
Q ss_pred CCEEEEEcCCCcCCCHHHHHHHHHHH
Q 028257 138 YDIVVNIQGDEPLIEPEIIDGVVKAL 163 (211)
Q Consensus 138 ~d~vlv~~~D~Pli~~~~i~~li~~~ 163 (211)
.+.+++..+..|++..+.+..+....
T Consensus 182 ~~Gi~v~q~~~~~~~~~~~~~~~~~~ 207 (282)
T COG0421 182 EDGIFVAQAGSPFLQDEEIALAYRNV 207 (282)
T ss_pred CCcEEEEecCCcccchHHHHHHHHHH
Confidence 45566666666666664444444333
No 206
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=33.55 E-value=2.9e+02 Score=26.54 Aligned_cols=93 Identities=16% Similarity=0.326 Sum_probs=52.5
Q ss_pred cccccc-CCeehHHHHHHHHHcCCCCCeEEEEcC-----cH----HHHHHHHHcCCeEeeCCcccCCChHHH--H-HHHH
Q 028257 66 KPLVNI-LGKPMIQRTWERSKLATTLDHLVVATD-----DE----KIAECCQQFGADVIMTSESCRNGTERC--N-EALQ 132 (211)
Q Consensus 66 K~ll~l-~GkpLl~~~i~~l~~~~~id~IVVvt~-----~e----~i~~~~~~~~v~vi~~~~~~~g~~~si--~-~al~ 132 (211)
.++-++ .|-.=|++.++.++.- ++ +++|+.| .+ .+++++++.++++.....+..|+..++ . ..++
T Consensus 349 en~Eal~sGl~NL~RHIenvr~F-Gv-PvVVAINKFd~DTe~Ei~~I~~~c~e~Gv~va~~~~~~~Gg~Gai~LA~aVve 426 (557)
T PRK13505 349 ENVEALKKGFANLERHIENIRKF-GV-PVVVAINKFVTDTDAEIAALKELCEELGVEVALSEVWAKGGEGGVELAEKVVE 426 (557)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHc-CC-CEEEEEeCCCCCCHHHHHHHHHHHHHcCCCEEEecccccCCcchHHHHHHHHH
Confidence 455555 4778889999999875 56 4444443 23 356778888998876665666654332 2 2222
Q ss_pred hhcc-CCCEEEEEcCCCcCCCHHHHHHHHHH
Q 028257 133 KLEK-KYDIVVNIQGDEPLIEPEIIDGVVKA 162 (211)
Q Consensus 133 ~l~~-~~d~vlv~~~D~Pli~~~~i~~li~~ 162 (211)
.+.. ..+.-++.+-|.|+ .+-|+.+.+.
T Consensus 427 A~~~~~s~f~~lY~~d~sl--~eKIe~IAkk 455 (557)
T PRK13505 427 LIEEGESNFKPLYDDEDSL--EEKIEKIATK 455 (557)
T ss_pred HHhcCCCCCceecCCCCcH--HHHHHHHHHH
Confidence 2221 22333455566665 3345555544
No 207
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=30.26 E-value=3.7e+02 Score=23.42 Aligned_cols=76 Identities=16% Similarity=0.200 Sum_probs=41.2
Q ss_pred ehHHHHHHHHHcCCCCCeEEEEcCcH------------HHHHHHHHcCCeEeeCCcccCCChHHHHHHHHhhccCCCEEE
Q 028257 75 PMIQRTWERSKLATTLDHLVVATDDE------------KIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVV 142 (211)
Q Consensus 75 pLl~~~i~~l~~~~~id~IVVvt~~e------------~i~~~~~~~~v~vi~~~~~~~g~~~si~~al~~l~~~~d~vl 142 (211)
.+-..+++.|.+. +++-+.|+|..+ .+.+++.+.++.++.... .. .......++.. ..|.++
T Consensus 10 ~~a~~~L~~L~~~-~~~i~~Vvt~pd~~~~r~~~~~~~~v~~~A~~~~Ipv~~~~~-~~--~~~~~~~l~~~--~~Dliv 83 (313)
T TIGR00460 10 TFSLPVLEELRED-NFEVVGVVTQPDKPAGRGKKLTPPPVKVLAEEKGIPVFQPEK-QR--QLEELPLVREL--KPDVIV 83 (313)
T ss_pred HHHHHHHHHHHhC-CCcEEEEEcCCCCccCCCCCCCCChHHHHHHHcCCCEEecCC-CC--cHHHHHHHHhh--CCCEEE
Confidence 3556778888765 466666777432 377888888988754321 11 11223334444 244444
Q ss_pred EEcCCCcCCCHHHHH
Q 028257 143 NIQGDEPLIEPEIID 157 (211)
Q Consensus 143 v~~~D~Pli~~~~i~ 157 (211)
+.... .++.++.++
T Consensus 84 ~~~~~-~iip~~il~ 97 (313)
T TIGR00460 84 VVSFG-KILPKEFLD 97 (313)
T ss_pred Eccch-hhCCHHHHh
Confidence 44333 356665555
No 208
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=30.17 E-value=5.1e+02 Score=26.13 Aligned_cols=38 Identities=16% Similarity=0.338 Sum_probs=26.8
Q ss_pred CCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeee
Q 028257 137 KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVT 176 (211)
Q Consensus 137 ~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~ 176 (211)
+...++|-.+|+ ++.+..+.|++.+++-++.++-+..+
T Consensus 120 ~~KV~IIDEad~--lt~~a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 120 RYKIFIIDEAHM--VTPQGFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CceEEEEechhh--cCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 345666666886 78888898998888766666555544
No 209
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=28.26 E-value=4.6e+02 Score=24.07 Aligned_cols=72 Identities=8% Similarity=-0.033 Sum_probs=42.8
Q ss_pred EEEEcC-cHHHHHHHHHcCCeEe----eCCcccCCChHHHHHHHHhhccCCCEEEEEcCCCc----CCCHHHHHHHHHHH
Q 028257 93 LVVATD-DEKIAECCQQFGADVI----MTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEP----LIEPEIIDGVVKAL 163 (211)
Q Consensus 93 IVVvt~-~e~i~~~~~~~~v~vi----~~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~P----li~~~~i~~li~~~ 163 (211)
|+|..+ .+....+.+..|.++. ++.+...-..+.+.+.|+.++ +.+.||+|.|-+- -++.+.=+++++.+
T Consensus 123 vwis~PtW~NH~~If~~aGl~v~~Y~Yyd~~~~~~df~~mla~L~~a~-~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~ 201 (396)
T COG1448 123 VWISDPTWPNHKAIFEAAGLEVETYPYYDAETKGLDFDGMLADLKTAP-EGSVVLLHGCCHNPTGIDPTEEQWQELADLI 201 (396)
T ss_pred EEeCCCCcHhHHHHHHhcCCceeeeeccccccccccHHHHHHHHHhCC-CCCEEEEecCCCCCCCCCCCHHHHHHHHHHH
Confidence 444433 3555666667776652 222111112466778888876 5788998887652 35677777777776
Q ss_pred Hh
Q 028257 164 QA 165 (211)
Q Consensus 164 ~~ 165 (211)
.+
T Consensus 202 ~~ 203 (396)
T COG1448 202 KE 203 (396)
T ss_pred HH
Confidence 53
No 210
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=28.08 E-value=3.4e+02 Score=23.55 Aligned_cols=114 Identities=15% Similarity=0.145 Sum_probs=54.0
Q ss_pred hhhceeehcccCCCCCCcEEEEEecCCCCCCCC--CccccccCCeehHHHHHH---HHHcCCCCCeEEEEcCcH---HHH
Q 028257 32 VAVGARAYLGRSKNFRSRVVGIIPARFASSRFE--GKPLVNILGKPMIQRTWE---RSKLATTLDHLVVATDDE---KIA 103 (211)
Q Consensus 32 ~~~~~~~~~~~~~~~~m~i~aIIlA~G~ssRlg--~K~ll~l~GkpLl~~~i~---~l~~~~~id~IVVvt~~e---~i~ 103 (211)
-|+||+-.++-=++..+.-..|-.+ -..|+| +|.- ..+++++++ .+.+. +++=+||.+|.. .+.
T Consensus 13 SGVGGLsVlrei~~~LP~e~~iY~~--D~a~~PYG~ks~-----e~I~~~~~~i~~~l~~~-~ik~lVIACNTASa~al~ 84 (269)
T COG0796 13 SGVGGLSVLREIRRQLPDEDIIYVG--DTARFPYGEKSE-----EEIRERTLEIVDFLLER-GIKALVIACNTASAVALE 84 (269)
T ss_pred CCCCcHHHHHHHHHHCCCCcEEEEe--cCCCCCCCCCCH-----HHHHHHHHHHHHHHHHc-CCCEEEEecchHHHHHHH
Confidence 4788887664333333332233332 344553 3333 345555544 44454 477788888742 233
Q ss_pred HHHHHcCCeEeeCCcccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHH
Q 028257 104 ECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL 163 (211)
Q Consensus 104 ~~~~~~~v~vi~~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~ 163 (211)
++-+++++.++-.- .++..|++... +..+.|+ ++.--+.....+++++.+
T Consensus 85 ~LR~~~~iPVvGvi-------Paik~A~~~t~--~~~IgVi-aT~~Tvks~~y~~~i~~~ 134 (269)
T COG0796 85 DLREKFDIPVVGVI-------PAIKPAVALTR--NGRIGVI-ATPATVKSNAYRDLIARF 134 (269)
T ss_pred HHHHhCCCCEEEec-------cchHHHHHhcc--CCeEEEE-eccchhccHHHHHHHHHh
Confidence 33346677664221 12344444331 2222222 222245555666666554
No 211
>PLN02828 formyltetrahydrofolate deformylase
Probab=27.75 E-value=4e+02 Score=22.99 Aligned_cols=89 Identities=9% Similarity=0.063 Sum_probs=50.0
Q ss_pred EEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCC-CCCeEEEEcCcH-----HHHHHHHHcCCeEeeCCcc-cCCCh
Q 028257 52 GIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLAT-TLDHLVVATDDE-----KIAECCQQFGADVIMTSES-CRNGT 124 (211)
Q Consensus 52 aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~-~id~IVVvt~~e-----~i~~~~~~~~v~vi~~~~~-~~g~~ 124 (211)
..|++-|.|+= ++..+++.++.. ..+-+.|+++++ .+.+.+++++++++..+.. .....
T Consensus 73 iavlvSg~g~n--------------l~~ll~~~~~g~l~~eI~~ViSn~~~~~~a~~~~~A~~~gIP~~~~~~~~~~~~e 138 (268)
T PLN02828 73 IAVLASKQDHC--------------LIDLLHRWQDGRLPVDITCVISNHERGPNTHVMRFLERHGIPYHYLPTTKENKRE 138 (268)
T ss_pred EEEEEcCCChh--------------HHHHHHhhhcCCCCceEEEEEeCCCCCCCchHHHHHHHcCCCEEEeCCCCCCCHH
Confidence 57788777762 345556665432 233344566653 6778888999988643321 11111
Q ss_pred HHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHH
Q 028257 125 ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGV 159 (211)
Q Consensus 125 ~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~l 159 (211)
..+...++ +. .++++.+=|..++++.++..
T Consensus 139 ~~~~~~l~----~~-DliVLAgym~IL~~~~l~~~ 168 (268)
T PLN02828 139 DEILELVK----GT-DFLVLARYMQILSGNFLKGY 168 (268)
T ss_pred HHHHHHHh----cC-CEEEEeeehHhCCHHHHhhc
Confidence 22322232 22 35677777778887777654
No 212
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=27.41 E-value=5.2e+02 Score=24.18 Aligned_cols=110 Identities=20% Similarity=0.241 Sum_probs=67.0
Q ss_pred EEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCCeEEEEcC------cHHHHHHHHHcCCeEeeCCcccCCC
Q 028257 50 VVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATD------DEKIAECCQQFGADVIMTSESCRNG 123 (211)
Q Consensus 50 i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~------~e~i~~~~~~~~v~vi~~~~~~~g~ 123 (211)
...|.++|=+|+.= .|-.......++. .+-...+|.+| -++++.++++.+++++-. .....+
T Consensus 100 P~vImmvGLQGsGK----------TTt~~KLA~~lkk-~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~-~~~~~P 167 (451)
T COG0541 100 PTVILMVGLQGSGK----------TTTAGKLAKYLKK-KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGS-GTEKDP 167 (451)
T ss_pred CeEEEEEeccCCCh----------HhHHHHHHHHHHH-cCCceEEEecccCChHHHHHHHHHHHHcCCceecC-CCCCCH
Confidence 34677787666632 2333333444444 24445566665 256666777778887653 233345
Q ss_pred hHHHHHHHHhhcc-CCCEEEEEcCCCcCCCHHHHHHHHHHHH-hCCCeEE
Q 028257 124 TERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQ-AAPDAVF 171 (211)
Q Consensus 124 ~~si~~al~~l~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~-~~~d~vv 171 (211)
..-...|++.+.. .+|.++|=.+-+--++.+.++++.+-.. -+|+-++
T Consensus 168 v~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~l 217 (451)
T COG0541 168 VEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETL 217 (451)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEE
Confidence 5555678887752 3688888888887888888888876553 2455443
No 213
>PHA00520 packaging NTPase P4
Probab=27.21 E-value=16 Score=32.16 Aligned_cols=30 Identities=27% Similarity=0.545 Sum_probs=24.0
Q ss_pred CCCCCCCCCCCchhHHHHHHhhcchhhhhhceeeh
Q 028257 5 SICSPSESSSSTKSWIVHGIVAGAAIAVAVGARAY 39 (211)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (211)
++|+|. ...|+.|||-+|+++.||=|+-.|
T Consensus 108 ~~~~pv-----v~~~~~~ri~SGv~vvvG~t~sGK 137 (330)
T PHA00520 108 VACAPV-----VHRWIGHRIESGVEVVVGGTGSGK 137 (330)
T ss_pred cccccc-----hhhhcccccccceEEEEccCCCCC
Confidence 456654 678999999999999998877554
No 214
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=26.58 E-value=1.6e+02 Score=28.61 Aligned_cols=111 Identities=14% Similarity=0.269 Sum_probs=58.5
Q ss_pred CCCC---CccccccC----CeehHHHHHHHHHc-------CCCCCeEEEEcCcHHHHHHHHH----cCCeEeeCCcccCC
Q 028257 61 SRFE---GKPLVNIL----GKPMIQRTWERSKL-------ATTLDHLVVATDDEKIAECCQQ----FGADVIMTSESCRN 122 (211)
Q Consensus 61 sRlg---~K~ll~l~----GkpLl~~~i~~l~~-------~~~id~IVVvt~~e~i~~~~~~----~~v~vi~~~~~~~g 122 (211)
+|+| +|-.+..+ ||+||.+.+--=.. -..||+++|..+...+++++.. ..+-++.+.-+.-|
T Consensus 330 trLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG 409 (752)
T KOG0734|consen 330 TRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVG 409 (752)
T ss_pred hhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhc
Confidence 4665 47777665 79999988743221 1157888888887666665432 22333332111112
Q ss_pred C----hH------HHHHHHHhhc--cCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEee
Q 028257 123 G----TE------RCNEALQKLE--KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAV 175 (211)
Q Consensus 123 ~----~~------si~~al~~l~--~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~ 175 (211)
+ .. .+.+-|-.++ ..++.++|+.++. | ++.++..+-.- .-.|.-+.++.
T Consensus 410 ~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATN-f--pe~LD~AL~RP-GRFD~~v~Vp~ 470 (752)
T KOG0734|consen 410 GKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATN-F--PEALDKALTRP-GRFDRHVTVPL 470 (752)
T ss_pred ccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccC-C--hhhhhHHhcCC-CccceeEecCC
Confidence 1 11 1222233332 2477888888887 4 56666554332 12355555443
No 215
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=25.20 E-value=3.7e+02 Score=21.77 Aligned_cols=91 Identities=18% Similarity=0.283 Sum_probs=46.7
Q ss_pred eehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHHcCCeEeeCCcccCCChHHHHHHHHhhccCCCEEEEEcCCCcCC
Q 028257 74 KPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLI 151 (211)
Q Consensus 74 kpLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~~~v~vi~~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli 151 (211)
.|=+..=++.++.. ++ .++|++|. ..+...++.+++++++... .-....+..|++..+-+.+. +++-+|+=|
T Consensus 48 tpe~~~W~~e~k~~-gi-~v~vvSNn~e~RV~~~~~~l~v~fi~~A~--KP~~~~fr~Al~~m~l~~~~-vvmVGDqL~- 121 (175)
T COG2179 48 TPELRAWLAELKEA-GI-KVVVVSNNKESRVARAAEKLGVPFIYRAK--KPFGRAFRRALKEMNLPPEE-VVMVGDQLF- 121 (175)
T ss_pred CHHHHHHHHHHHhc-CC-EEEEEeCCCHHHHHhhhhhcCCceeeccc--CccHHHHHHHHHHcCCChhH-EEEEcchhh-
Confidence 44444445555554 34 55555542 3344556677887766421 12234677788776422333 345577722
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEeeeeC
Q 028257 152 EPEIIDGVVKALQAAPDAVFSTAVTSL 178 (211)
Q Consensus 152 ~~~~i~~li~~~~~~~d~vv~v~~~~~ 178 (211)
-++. ..+-..+.++.+.++
T Consensus 122 -----TDVl---ggnr~G~~tIlV~Pl 140 (175)
T COG2179 122 -----TDVL---GGNRAGMRTILVEPL 140 (175)
T ss_pred -----hhhh---cccccCcEEEEEEEe
Confidence 2222 233455666666664
No 216
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=25.06 E-value=1.3e+02 Score=23.24 Aligned_cols=24 Identities=25% Similarity=0.542 Sum_probs=21.3
Q ss_pred EEEEEcCCCcCCCHHHHHHHHHHHH
Q 028257 140 IVVNIQGDEPLIEPEIIDGVVKALQ 164 (211)
Q Consensus 140 ~vlv~~~D~Pli~~~~i~~li~~~~ 164 (211)
+++++|+|. .++++.+.++++.+.
T Consensus 1 ~v~~~DaDt-~~~~d~l~~~~~~~~ 24 (193)
T PF13632_consen 1 YVLFLDADT-RLPPDFLERLVAALE 24 (193)
T ss_pred CEEEEcCCC-CCChHHHHHHHHHHh
Confidence 578999999 688999999999887
No 217
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=24.17 E-value=2.7e+02 Score=19.78 Aligned_cols=54 Identities=13% Similarity=0.159 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEEeeeeCCC--CCCCCCCCeEEEeCCCccEEeeecC
Q 028257 151 IEPEIIDGVVKALQAAPDAVFSTAVTSLKP--EDAFDPNRVKCVVDNHGYAIYFSRG 205 (211)
Q Consensus 151 i~~~~i~~li~~~~~~~d~vv~v~~~~~~~--~~~~d~~~~~~v~~~~~~~~~~~~~ 205 (211)
++.+.++++.+.+.+. +.-+........+ ....+......+.||+|+.+.+...
T Consensus 66 v~~~dl~~~~~~l~~~-G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 121 (123)
T cd08351 66 VSEEEFDRIFARIRER-GIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEIITR 121 (123)
T ss_pred eCHHHHHHHHHHHHHc-CCceecCCcccccccccCCCCeeEEEEECCCCCEEEEEec
Confidence 4456789999888653 2222111111000 1112223567899999999998876
No 218
>COG1412 Uncharacterized proteins of PilT N-term./Vapc superfamily [General function prediction only]
Probab=23.81 E-value=1.9e+02 Score=22.34 Aligned_cols=40 Identities=23% Similarity=0.248 Sum_probs=29.8
Q ss_pred CeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEee
Q 028257 73 GKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIM 115 (211)
Q Consensus 73 GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~ 115 (211)
|+..-+..++.+.+.+ ..+|+|++.++.+-+++.|++++.
T Consensus 83 ~~~aDe~i~~~a~~~~---~~iVaTnD~eLk~rlr~~GIPvi~ 122 (136)
T COG1412 83 GRYADECLLEAALKHG---RYIVATNDKELKRRLRENGIPVIT 122 (136)
T ss_pred CCChHHHHHHHHHHcC---CEEEEeCCHHHHHHHHHcCCCEEE
Confidence 4455666666776653 688999999999888877988854
No 219
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=22.70 E-value=1.9e+02 Score=22.81 Aligned_cols=38 Identities=26% Similarity=0.274 Sum_probs=27.7
Q ss_pred ehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEe
Q 028257 75 PMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVI 114 (211)
Q Consensus 75 pLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi 114 (211)
.+|+..+..+... -.+|.|+|++..++..+...|+..+
T Consensus 81 ~~Ie~~v~~~~~~--~~~v~VVTSD~~iq~~~~~~GA~~i 118 (166)
T PF05991_consen 81 DYIERLVRELKNR--PRQVTVVTSDREIQRAARGRGAKRI 118 (166)
T ss_pred HHHHHHHHHhccC--CCeEEEEeCCHHHHHHHhhCCCEEE
Confidence 4666666665542 2689999998888888888888754
No 220
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=22.10 E-value=2.8e+02 Score=25.66 Aligned_cols=37 Identities=14% Similarity=0.208 Sum_probs=29.0
Q ss_pred CCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEe
Q 028257 138 YDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTA 174 (211)
Q Consensus 138 ~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~ 174 (211)
.+..+++++..|+.+++.+-.+....++..-.+.++.
T Consensus 399 e~Gl~VvQags~y~tp~vfw~i~aTik~AG~~~~Pyh 435 (508)
T COG4262 399 ETGLMVVQAGSPYFTPRVFWRIDATIKSAGYRVWPYH 435 (508)
T ss_pred cCceEEEecCCCccCCceeeeehhHHHhCcceeeeeE
Confidence 5789999999999999999998888866444444443
No 221
>PLN03013 cysteine synthase
Probab=21.91 E-value=5.9e+02 Score=23.56 Aligned_cols=74 Identities=16% Similarity=0.128 Sum_probs=35.9
Q ss_pred HHHHHHHHHcCCeEeeCCcccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHH----HHHHHHHHhCCCeEEEEe
Q 028257 100 EKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEII----DGVVKALQAAPDAVFSTA 174 (211)
Q Consensus 100 e~i~~~~~~~~v~vi~~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i----~~li~~~~~~~d~vv~v~ 174 (211)
++..+..+.+|++++..++. .+...++..+.+......+++++.+-+.|....... .++++++....|+++...
T Consensus 211 ~~K~~~ira~GAeVi~v~~~-~~~~~a~~~A~ela~~~~g~~~~~qy~Np~n~~ah~~ttg~EI~eq~~~~~D~vV~~v 288 (429)
T PLN03013 211 MERRVLLKAFGAELVLTDPA-KGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGI 288 (429)
T ss_pred HHHHHHHHHcCCEEEEECCC-CChHHHHHHHHHHHhhcCCeEeCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence 34445556678777654322 122233444444332223566666666665432222 344444433467776543
No 222
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=21.61 E-value=2.6e+02 Score=19.67 Aligned_cols=45 Identities=18% Similarity=0.072 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhCCCeEEEEeeeeCCCCCCCCCCCeEEEeCCCccEEeeecC
Q 028257 155 IIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRG 205 (211)
Q Consensus 155 ~i~~li~~~~~~~d~vv~v~~~~~~~~~~~d~~~~~~v~~~~~~~~~~~~~ 205 (211)
.++++.+++.+....++. ...+ ..+-.....+.||+|+.+.|+++
T Consensus 78 d~d~~~~~l~~~G~~v~~-~~~~-----~~~g~~~~~~~DPdG~~~~l~~~ 122 (122)
T cd08355 78 DVDAHYERARAAGAEILR-EPTD-----TPYGSREFTARDPEGNLWTFGTY 122 (122)
T ss_pred CHHHHHHHHHHCCCEEee-Cccc-----cCCCcEEEEEECCCCCEEEEecC
Confidence 367777776543322221 1111 11112445799999999998764
No 223
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=21.45 E-value=4.5e+02 Score=24.75 Aligned_cols=69 Identities=13% Similarity=0.036 Sum_probs=38.6
Q ss_pred cCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCCChHHHHHHHHhhc-cCCCEEEEEcCCC
Q 028257 71 ILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDE 148 (211)
Q Consensus 71 l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g~~~si~~al~~l~-~~~d~vlv~~~D~ 148 (211)
++.-++=++..+.+.+. +. +++++-.+++..+.+++.+.+++..+.. . ...+++.. ++.|.+++...|.
T Consensus 423 ~G~G~~G~~la~~L~~~-g~-~vvvId~d~~~~~~~~~~g~~~i~GD~~--~-----~~~L~~a~i~~a~~viv~~~~~ 492 (558)
T PRK10669 423 VGYGRVGSLLGEKLLAA-GI-PLVVIETSRTRVDELRERGIRAVLGNAA--N-----EEIMQLAHLDCARWLLLTIPNG 492 (558)
T ss_pred ECCChHHHHHHHHHHHC-CC-CEEEEECCHHHHHHHHHCCCeEEEcCCC--C-----HHHHHhcCccccCEEEEEcCCh
Confidence 34467778888888875 34 4555554444344446678888775422 1 12344332 2356666665553
No 224
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=21.29 E-value=4.8e+02 Score=25.10 Aligned_cols=75 Identities=16% Similarity=0.192 Sum_probs=49.6
Q ss_pred CcHHHHHHHHHcCCeEeeCCc---ccCCCh-HHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEE
Q 028257 98 DDEKIAECCQQFGADVIMTSE---SCRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFST 173 (211)
Q Consensus 98 ~~e~i~~~~~~~~v~vi~~~~---~~~g~~-~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v 173 (211)
.+++++..+..+|+.--.... .+.||. .++..|.-.. ....++|++-=.-+++.+.++.+..++..-...|+.+
T Consensus 458 ~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~--~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~GGVv~V 535 (582)
T KOG0062|consen 458 TEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTW--NNPHLLVLDEPTNHLDRDSLGALAKALKNFNGGVVLV 535 (582)
T ss_pred CHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhc--CCCcEEEecCCCccccHHHHHHHHHHHHhcCCcEEEE
Confidence 367788888888865422211 233443 3443333223 4678999998888999999999999997765666655
Q ss_pred e
Q 028257 174 A 174 (211)
Q Consensus 174 ~ 174 (211)
.
T Consensus 536 S 536 (582)
T KOG0062|consen 536 S 536 (582)
T ss_pred E
Confidence 4
No 225
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=21.12 E-value=4.5e+02 Score=21.21 Aligned_cols=82 Identities=16% Similarity=0.179 Sum_probs=40.7
Q ss_pred ehHHHHHHHHHcCCCCCeEE-EEcCcH--HHHHHHHHcCCeEee-CCcccCCC---hHHHHHHHHhhccCCCEEEEEcCC
Q 028257 75 PMIQRTWERSKLATTLDHLV-VATDDE--KIAECCQQFGADVIM-TSESCRNG---TERCNEALQKLEKKYDIVVNIQGD 147 (211)
Q Consensus 75 pLl~~~i~~l~~~~~id~IV-Vvt~~e--~i~~~~~~~~v~vi~-~~~~~~g~---~~si~~al~~l~~~~d~vlv~~~D 147 (211)
++++.+++.+.+...--+|+ |+++.+ ...+.+++.+++++. .+....+. ...+...++.. ..|. +++.+-
T Consensus 12 s~~~~ll~~~~~~~l~~~I~~vi~~~~~~~~~~~A~~~gip~~~~~~~~~~~~~~~~~~~~~~l~~~--~~D~-iv~~~~ 88 (190)
T TIGR00639 12 SNLQAIIDACKEGKIPASVVLVISNKPDAYGLERAAQAGIPTFVLSLKDFPSREAFDQAIIEELRAH--EVDL-VVLAGF 88 (190)
T ss_pred hhHHHHHHHHHcCCCCceEEEEEECCccchHHHHHHHcCCCEEEECccccCchhhhhHHHHHHHHhc--CCCE-EEEeCc
Confidence 45566666676543222444 456643 334667788888754 22222111 12344455544 2444 444444
Q ss_pred CcCCCHHHHHHH
Q 028257 148 EPLIEPEIIDGV 159 (211)
Q Consensus 148 ~Pli~~~~i~~l 159 (211)
+..++++.++..
T Consensus 89 ~~il~~~~l~~~ 100 (190)
T TIGR00639 89 MRILGPTFLSRF 100 (190)
T ss_pred chhCCHHHHhhc
Confidence 446666666543
No 226
>PF05337 CSF-1: Macrophage colony stimulating factor-1 (CSF-1); InterPro: IPR008001 Colony stimulating factor 1 (CSF-1) is a homodimeric polypeptide growth factor whose primary function is to regulate the survival, proliferation, differentiation, and function of cells of the mononuclear phagocytic lineage. This lineage includes mononuclear phagocytic precursors, blood monocytes, tissue macrophages, osteoclasts, and microglia of the brain, all of which possess cell surface receptors for CSF-1. The protein has also been linked with male fertility [] and mutations in the Csf-1 gene have been found to cause osteopetrosis and failure of tooth eruption [].; GO: 0005125 cytokine activity, 0008083 growth factor activity, 0016021 integral to membrane; PDB: 3EJJ_A.
Probab=20.85 E-value=33 Score=29.84 Aligned_cols=28 Identities=18% Similarity=0.324 Sum_probs=0.0
Q ss_pred HHHHHHhhc-chhhhhhceeehcccCCCC
Q 028257 19 WIVHGIVAG-AAIAVAVGARAYLGRSKNF 46 (211)
Q Consensus 19 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 46 (211)
.|.|-+|++ +.|..+|||+++.+|+++.
T Consensus 226 ~vf~lLVPSiILVLLaVGGLLfYr~rrRs 254 (285)
T PF05337_consen 226 FVFYLLVPSIILVLLAVGGLLFYRRRRRS 254 (285)
T ss_dssp -----------------------------
T ss_pred ccccccccchhhhhhhccceeeecccccc
Confidence 566667777 4566899999987666543
No 227
>PF00746 Gram_pos_anchor: Gram positive anchor; InterPro: IPR019948 Viruses, parasites and bacteria are covered in protein and sugar molecules that help them gain entry into a host by counteracting the host's defences. One such molecule is the M protein produced by certain streptococcal bacteria. M proteins embody a motif that is now known to be shared by many Gram-positive bacterial surface proteins. The motif includes a conserved hexapeptide, which precedes a hydrophobic C-terminal membrane anchor, which itself precedes a cluster of basic residues [, ]. This structure is represented in the following schematic representation: +--------------------------------------------+-+--------+-+ | Variable length extracellular domain |H| Anchor |B| +--------------------------------------------+-+--------+-+ 'H': conserved hexapeptide. 'B': cluster of basic residues. It has been proposed that this hexapeptide sequence is responsible for a post- translational modification necessary for the proper anchoring of the proteins which bear it, to the cell wall.; PDB: 2XTL_B 3QDH_A 2Y1V_C 2X9X_A 3RPK_A 2X9W_A 2X9Y_A.
Probab=20.51 E-value=33 Score=20.08 Aligned_cols=19 Identities=21% Similarity=0.319 Sum_probs=0.0
Q ss_pred HhhcchhhhhhceeehcccC
Q 028257 24 IVAGAAIAVAVGARAYLGRS 43 (211)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~ 43 (211)
.++|+ +.+..|+.++.+||
T Consensus 21 ~~~G~-l~~~~~~~~~~krr 39 (39)
T PF00746_consen 21 TILGA-LLLLGGGLLLVKRR 39 (39)
T ss_dssp --------------------
T ss_pred HHHHH-HHHHHHHHHheecC
Confidence 45666 55555666665543
No 228
>TIGR03065 srtB_sig_QVPTGV sortase B signal domain, QVPTGV class. This model represents a boutique (unusual) sorting signal, recognized by a member of the sortase SrtB family rather than by the housekeeping sortase, SrtA.
Probab=20.31 E-value=35 Score=19.32 Aligned_cols=13 Identities=38% Similarity=0.751 Sum_probs=10.3
Q ss_pred hhhceeehcccCC
Q 028257 32 VAVGARAYLGRSK 44 (211)
Q Consensus 32 ~~~~~~~~~~~~~ 44 (211)
+++||.+|+..++
T Consensus 19 va~gg~~y~tk~k 31 (32)
T TIGR03065 19 VAIGGAIYFTKKK 31 (32)
T ss_pred EEeccEEEEEEcc
Confidence 7899999996554
No 229
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=20.00 E-value=2.5e+02 Score=19.80 Aligned_cols=49 Identities=16% Similarity=0.133 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEEeeeeCCCCCCCCCCCeEEEeCCCccEEeeec
Q 028257 151 IEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSR 204 (211)
Q Consensus 151 i~~~~i~~li~~~~~~~d~vv~v~~~~~~~~~~~d~~~~~~v~~~~~~~~~~~~ 204 (211)
+..+.++++.+++.+.....+.- +. .....-.+.-.+.||+|+.+.++.
T Consensus 70 ~~v~dvd~~~~~l~~~g~~~~~~---~~--~~~~~g~r~~~~~DPdGn~iei~~ 118 (120)
T cd09011 70 FEEEDFDAFLDKLKRYDNIEYVH---PI--KEHPWGQRVVRFYDPDKHIIEVGE 118 (120)
T ss_pred EEehhhHHHHHHHHhcCCcEEec---Cc--ccCCCccEEEEEECCCCCEEEEec
Confidence 34567999998887632211211 11 111111245678999999998875
Done!