Query 028257
Match_columns 211
No_of_seqs 150 out of 1216
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 14:09:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028257.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028257hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tqd_A 3-deoxy-manno-octuloson 100.0 1.9E-29 6.7E-34 213.8 18.7 162 48-210 8-171 (256)
2 4fcu_A 3-deoxy-manno-octuloson 100.0 9.7E-29 3.3E-33 209.1 18.8 160 50-210 2-164 (253)
3 3k8d_A 3-deoxy-manno-octuloson 100.0 1.1E-28 3.6E-33 210.1 18.7 166 43-210 12-179 (264)
4 3oam_A 3-deoxy-manno-octuloson 100.0 2.9E-28 1E-32 205.2 18.2 161 48-210 1-163 (252)
5 1h7e_A 3-deoxy-manno-octuloson 99.9 1.3E-24 4.3E-29 180.7 19.3 157 48-208 1-159 (245)
6 1ezi_A CMP-N-acetylneuraminic 99.9 1E-23 3.6E-28 173.7 15.8 151 47-204 2-157 (228)
7 1vic_A 3-deoxy-manno-octuloson 99.9 1.9E-23 6.6E-28 176.0 17.7 158 48-208 1-161 (262)
8 2y6p_A 3-deoxy-manno-octuloson 99.9 5E-23 1.7E-27 169.7 18.8 153 48-208 1-153 (234)
9 3q80_A 2-C-methyl-D-erythritol 99.9 5E-23 1.7E-27 171.8 13.8 149 49-200 7-171 (231)
10 1qwj_A Cytidine monophospho-N- 99.9 1.5E-22 5.3E-27 167.4 16.2 127 47-174 1-132 (229)
11 3f1c_A Putative 2-C-methyl-D-e 99.9 4.8E-22 1.6E-26 166.4 13.5 152 47-199 1-174 (246)
12 2waw_A MOBA relate protein; un 99.9 7.8E-21 2.7E-25 152.3 14.4 123 48-172 4-129 (199)
13 2wee_A MOBA-related protein; u 99.8 1.3E-20 4.6E-25 150.9 13.0 122 48-171 4-128 (197)
14 2yc3_A 2-C-methyl-D-erythritol 99.8 6.6E-20 2.3E-24 150.5 12.9 119 47-166 2-126 (228)
15 3d5n_A Q97W15_sulso; NESG, SSR 99.8 2.7E-20 9.4E-25 150.8 10.4 118 48-172 1-121 (197)
16 1e5k_A Molybdopterin-guanine d 99.8 1.1E-19 3.7E-24 147.9 13.1 119 47-172 4-125 (201)
17 2xwl_A 2-C-methyl-D-erythritol 99.8 3.5E-19 1.2E-23 145.4 16.0 122 48-172 1-127 (223)
18 3ngw_A Molybdopterin-guanine d 99.8 2.6E-19 8.8E-24 147.0 14.7 115 51-173 2-119 (208)
19 1vgw_A 4-diphosphocytidyl-2C-m 99.8 3E-19 1E-23 146.7 14.2 118 48-167 5-133 (231)
20 1i52_A 4-diphosphocytidyl-2-C- 99.8 1.1E-19 3.8E-24 150.3 9.8 118 46-167 4-128 (236)
21 2vsh_A TARI, 2-C-methyl-D-eryt 99.8 4.5E-19 1.5E-23 145.7 12.6 117 50-166 3-134 (236)
22 1vpa_A 2-C-methyl-D-erythritol 99.8 5.1E-19 1.8E-23 145.7 12.6 113 50-166 14-135 (234)
23 2e8b_A Probable molybdopterin- 99.8 2.9E-19 9.9E-24 145.1 9.7 112 41-160 6-120 (201)
24 4fce_A Bifunctional protein GL 99.8 1.4E-18 4.6E-23 156.2 14.3 147 48-205 7-158 (459)
25 1w55_A ISPD/ISPF bifunctional 99.8 6.8E-19 2.3E-23 156.2 10.3 144 47-198 1-151 (371)
26 3rsb_A Adenosylcobinamide-phos 99.8 2.5E-19 8.6E-24 144.0 6.7 109 51-165 2-119 (196)
27 2v0h_A Bifunctional protein GL 99.8 6.6E-18 2.3E-22 151.6 15.2 148 47-205 3-155 (456)
28 1fxo_A Glucose-1-phosphate thy 99.8 1E-17 3.4E-22 144.0 14.7 148 48-206 1-163 (293)
29 2px7_A 2-C-methyl-D-erythritol 99.8 2.2E-18 7.5E-23 143.2 9.6 113 48-171 24-138 (236)
30 1hm9_A GLMU, UDP-N-acetylgluco 99.8 1.9E-17 6.6E-22 149.3 16.3 148 49-206 11-165 (468)
31 1lvw_A Glucose-1-phosphate thy 99.7 7E-17 2.4E-21 138.9 15.9 145 51-206 5-164 (295)
32 3juk_A UDP-glucose pyrophospho 99.7 1.3E-17 4.6E-22 141.3 11.0 152 48-207 1-193 (281)
33 2xme_A CTP-inositol-1-phosphat 99.7 3E-17 1E-21 135.3 10.9 117 39-161 8-130 (232)
34 2qh5_A PMI, ALGA, mannose-6-ph 99.7 2.4E-16 8.1E-21 135.9 16.4 152 48-207 3-171 (308)
35 4ecm_A Glucose-1-phosphate thy 99.7 6.5E-17 2.2E-21 136.6 12.5 146 49-206 24-183 (269)
36 3st8_A Bifunctional protein GL 99.7 3.7E-16 1.3E-20 142.9 17.3 150 49-206 12-174 (501)
37 2e3d_A UTP--glucose-1-phosphat 99.7 1.6E-16 5.4E-21 136.2 13.6 120 50-173 9-169 (302)
38 1mc3_A Glucose-1-phosphate thy 99.7 7.6E-17 2.6E-21 138.8 11.4 145 51-206 5-164 (296)
39 2dpw_A Hypothetical protein TT 99.7 4.7E-17 1.6E-21 134.7 8.8 113 48-173 1-118 (232)
40 1jyk_A LICC protein, CTP:phosp 99.7 4E-17 1.4E-21 137.2 7.1 139 48-205 24-172 (254)
41 2ux8_A Glucose-1-phosphate uri 99.7 1E-16 3.5E-21 137.2 9.2 123 48-174 13-169 (297)
42 2pa4_A UTP-glucose-1-phosphate 99.7 1.8E-16 6.1E-21 137.6 10.5 123 50-174 13-169 (323)
43 3pnn_A Conserved domain protei 99.7 1.4E-15 4.6E-20 131.0 13.8 154 46-206 2-186 (303)
44 1tzf_A Glucose-1-phosphate cyt 99.6 9.1E-16 3.1E-20 127.9 11.3 146 48-207 1-181 (259)
45 3brk_X Glucose-1-phosphate ade 99.6 2.2E-15 7.5E-20 134.7 13.2 154 46-207 8-190 (420)
46 2ggo_A 401AA long hypothetical 99.6 1.4E-15 4.7E-20 134.6 11.2 138 51-206 2-148 (401)
47 2cu2_A Putative mannose-1-phos 99.6 5.6E-15 1.9E-19 129.3 12.9 154 48-207 1-171 (337)
48 2x65_A Mannose-1-phosphate gua 99.6 9.4E-15 3.2E-19 127.8 13.7 150 51-207 3-173 (336)
49 4evw_A Nucleoside-diphosphate- 99.6 6.7E-15 2.3E-19 123.9 8.4 141 52-205 2-163 (255)
50 1yp2_A Glucose-1-phosphate ade 99.5 5.6E-14 1.9E-18 126.4 12.7 154 47-207 18-200 (451)
51 2i5e_A Hypothetical protein MM 99.0 3.3E-10 1.1E-14 92.1 7.0 102 50-161 4-111 (211)
52 2i5k_A UTP--glucose-1-phosphat 98.8 2.5E-08 8.6E-13 91.1 12.1 122 47-170 90-257 (488)
53 2icy_A Probable UTP-glucose-1- 98.8 6.1E-08 2.1E-12 88.2 12.6 125 48-174 78-248 (469)
54 1jv1_A Glcnac1P uridyltransfer 98.8 1.9E-07 6.6E-12 85.6 15.7 104 48-151 101-257 (505)
55 2oeg_A UTP-glucose-1-phosphate 98.5 5.4E-07 1.8E-11 82.6 11.1 58 49-107 75-144 (505)
56 3oc9_A UDP-N-acetylglucosamine 98.5 2.4E-06 8.3E-11 76.2 13.9 105 49-153 35-193 (405)
57 2yqc_A UDP-N-acetylglucosamine 98.4 2.7E-06 9.2E-11 77.7 11.7 60 49-108 103-183 (486)
58 3cgx_A Putative nucleotide-dip 98.1 1.4E-05 4.8E-10 66.5 9.0 97 74-172 37-136 (242)
59 1qg8_A Protein (spore coat pol 97.0 0.0083 2.8E-07 48.3 11.4 105 48-169 1-119 (255)
60 3bcv_A Putative glycosyltransf 97.0 0.017 6E-07 45.8 12.9 107 47-172 4-119 (240)
61 3ckj_A Putative uncharacterize 96.9 0.011 3.8E-07 50.4 11.8 111 46-172 46-168 (329)
62 3ogz_A UDP-sugar pyrophosphory 96.8 0.0012 4E-08 61.7 5.0 63 49-111 114-186 (630)
63 3r3i_A UTP--glucose-1-phosphat 96.7 0.0013 4.4E-08 60.3 5.0 63 45-108 123-197 (528)
64 4hg6_A Cellulose synthase subu 96.6 0.018 6.1E-07 55.3 12.3 105 48-169 140-269 (802)
65 1xhb_A Polypeptide N-acetylgal 96.5 0.019 6.4E-07 51.1 11.0 109 46-172 27-148 (472)
66 3gue_A UTP-glucose-1-phosphate 96.4 0.0041 1.4E-07 56.5 5.9 59 49-108 76-146 (484)
67 3f1y_A Mannosyl-3-phosphoglyce 96.1 0.043 1.5E-06 48.3 10.7 111 47-173 93-217 (387)
68 2ffu_A Ppgalnact-2, polypeptid 96.1 0.039 1.3E-06 49.6 10.6 109 46-172 64-180 (501)
69 2d7i_A Polypeptide N-acetylgal 95.9 0.034 1.2E-06 51.1 9.3 108 47-172 111-230 (570)
70 2z86_A Chondroitin synthase; G 95.8 0.052 1.8E-06 49.9 10.5 108 47-171 92-207 (625)
71 2z86_A Chondroitin synthase; G 95.4 0.13 4.4E-06 47.3 11.2 93 72-169 385-485 (625)
72 4fix_A UDP-galactofuranosyl tr 95.3 0.052 1.8E-06 51.1 8.6 103 71-176 189-307 (657)
73 2bo4_A Mannosylglycerate synth 94.3 0.34 1.2E-05 42.8 10.7 51 121-173 74-128 (397)
74 3l7i_A Teichoic acid biosynthe 89.9 0.06 2.1E-06 50.8 0.0 107 47-172 1-116 (729)
75 1fo8_A Alpha-1,3-mannosyl-glyc 74.4 13 0.00044 31.9 8.3 103 72-175 11-138 (343)
76 3n0v_A Formyltetrahydrofolate 71.2 27 0.00093 29.1 9.4 91 52-159 93-187 (286)
77 3lou_A Formyltetrahydrofolate 69.8 32 0.0011 28.7 9.6 91 52-159 98-192 (292)
78 2l2t_A Receptor tyrosine-prote 65.9 3.9 0.00013 24.6 2.2 38 7-47 2-41 (44)
79 1omz_A Alpha-1,4-N-acetylhexos 65.3 7.8 0.00027 32.7 4.8 113 46-176 26-144 (293)
80 4ds3_A Phosphoribosylglycinami 62.7 55 0.0019 25.9 9.6 95 47-159 5-107 (209)
81 2nxv_A ATP synthase subunits r 58.2 22 0.00074 28.3 6.2 39 124-165 63-101 (249)
82 3da8_A Probable 5'-phosphoribo 58.1 68 0.0023 25.4 10.0 94 49-159 12-110 (215)
83 3o1l_A Formyltetrahydrofolate 54.7 55 0.0019 27.4 8.3 91 52-159 108-202 (302)
84 2c0n_A A197; thermophil protei 54.1 78 0.0027 25.1 8.5 37 137-177 53-92 (203)
85 3obi_A Formyltetrahydrofolate 51.9 34 0.0012 28.5 6.5 90 52-159 92-187 (288)
86 3p9x_A Phosphoribosylglycinami 48.7 98 0.0034 24.4 11.1 90 52-159 5-102 (211)
87 2jwa_A Receptor tyrosine-prote 46.4 11 0.00039 22.5 1.9 40 6-47 1-42 (44)
88 2ks1_B Epidermal growth factor 45.4 7.7 0.00026 23.3 1.1 38 6-46 2-41 (44)
89 3tqr_A Phosphoribosylglycinami 42.4 1.2E+02 0.0043 23.9 9.9 82 75-159 17-104 (215)
90 2zu9_A Mannosyl-3-phosphoglyce 41.6 1.4E+02 0.0046 26.1 8.9 41 122-164 144-185 (394)
91 3av3_A Phosphoribosylglycinami 34.4 1.6E+02 0.0056 22.9 9.2 81 75-158 15-102 (212)
92 3kcq_A Phosphoribosylglycinami 33.0 1.7E+02 0.0059 23.0 7.7 79 75-159 20-103 (215)
93 3auf_A Glycinamide ribonucleot 31.3 2E+02 0.0067 22.8 9.8 81 75-158 34-121 (229)
94 2ywr_A Phosphoribosylglycinami 29.9 2E+02 0.0068 22.5 9.3 79 75-157 13-99 (216)
95 2bln_A Protein YFBG; transfera 27.8 2.6E+02 0.0088 23.1 8.7 73 78-157 13-94 (305)
96 3bej_E Nuclear receptor coacti 25.2 20 0.00069 18.7 0.5 20 7-26 1-20 (26)
97 3nrb_A Formyltetrahydrofolate 25.2 57 0.002 27.1 3.6 91 52-159 91-186 (287)
98 1jkx_A GART;, phosphoribosylgl 24.7 2.5E+02 0.0085 21.9 9.9 80 76-158 13-99 (212)
99 2jfz_A Glutamate racemase; cel 22.2 1.3E+02 0.0044 24.0 5.2 78 32-114 8-90 (255)
100 4g81_D Putative hexonate dehyd 21.9 3.1E+02 0.01 21.9 9.3 76 91-172 9-92 (255)
101 2fy7_A Beta-1,4-galactosyltran 21.3 2.9E+02 0.01 22.4 7.3 19 130-150 124-142 (287)
102 1meo_A Phosophoribosylglycinam 20.4 3.1E+02 0.01 21.3 10.5 81 75-158 12-99 (209)
No 1
>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0
Probab=99.97 E-value=1.9e-29 Score=213.76 Aligned_cols=162 Identities=40% Similarity=0.667 Sum_probs=135.2
Q ss_pred CcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCCChHHH
Q 028257 48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERC 127 (211)
Q Consensus 48 m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g~~~si 127 (211)
|++.+||||||.|+|||+|+|++++|||||+|+++++.++ ++++|+|+++++++.++++.+++++++..+...+++.++
T Consensus 8 M~~~aIIlA~G~stRl~~K~L~~i~GkPli~~~l~~l~~~-~i~~VvVvt~~~~i~~~~~~~g~~v~~~~~~~~~Gt~~i 86 (256)
T 3tqd_A 8 MEFRVIIPARFDSTRLPGKALVDIAGKPMIQHVYESAIKS-GAEEVVIATDDKRIRQVAEDFGAVVCMTSSDHQSGTERI 86 (256)
T ss_dssp -CCEEEEECCCC---CTTGGGCEETTEEHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTTCEEEECCTTCCSHHHHH
T ss_pred CCceEEEEcCCCCCCCCCCCeeeECCchHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHHHcCCeEEEeCCCCCCcHHHH
Confidence 7899999999999999999999999999999999999988 499999999999999998889999877655556777788
Q ss_pred HHHHHhhc-cCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeeeC-CCCCCCCCCCeEEEeCCCccEEeeecC
Q 028257 128 NEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRG 205 (211)
Q Consensus 128 ~~al~~l~-~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~~-~~~~~~d~~~~~~v~~~~~~~~~~~~~ 205 (211)
..+++.+. .+.|.+++++||+||++++.++.+++.+.++++..++....++ ++++..|++.+|++.|.+|+++||+|+
T Consensus 87 ~~a~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~a~l~~~v~~~~~~~~p~~vkvv~d~~g~~l~fsr~ 166 (256)
T 3tqd_A 87 AEAAVALGFEDDEIIVCLQGDEPLIPPDAIRKLAEDLDEHDNVKVASLCTPITEVDELFNPHSTKVVLNRRNYALYFSHA 166 (256)
T ss_dssp HHHHHHTTCCTTCEEEEECTTCCCCCHHHHHHHHHHHHHCC--CEEEEEEECCCHHHHTCTTSCEEEECTTSBEEEEESS
T ss_pred HHHHHHhCcCCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeeEcCCHHHhhCCCccEEEECCCCEEeEEecC
Confidence 88998873 2468999999999999999999999999765444455555565 345678999999999999999999999
Q ss_pred CCCCC
Q 028257 206 LIPYN 210 (211)
Q Consensus 206 ~~~~~ 210 (211)
++||.
T Consensus 167 pip~~ 171 (256)
T 3tqd_A 167 PIPWG 171 (256)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 99875
No 2
>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A
Probab=99.96 E-value=9.7e-29 Score=209.09 Aligned_cols=160 Identities=41% Similarity=0.639 Sum_probs=135.1
Q ss_pred EEEEEecCCCCCCCCCccccccCCeehHHHHH-HHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCCChHHHH
Q 028257 50 VVGIIPARFASSRFEGKPLVNILGKPMIQRTW-ERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCN 128 (211)
Q Consensus 50 i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i-~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g~~~si~ 128 (211)
+.+||||||.|+||++|+|++++|||||+|++ +++.++ ++++|+|+++++++.++++.+++++++..+...+++.++.
T Consensus 2 ~~aiIlA~G~stR~~~K~L~~i~GkPli~~~i~~~~~~~-~~~~vvVvt~~~~i~~~~~~~g~~v~~~~~~~~~Gt~~i~ 80 (253)
T 4fcu_A 2 KHIVIPARFSSSRLPGKPLLLIHDRPMILRVVDQAKKVE-GFDDLCVATDDERIAEICRAEGVDVVLTSADHPSGTDRLS 80 (253)
T ss_dssp EEEEEECCSCCTTSTTGGGSEETTEEHHHHHHHHHHTCT-TCCEEEEEESCHHHHHHHHTTTCCEEECCTTCCCHHHHHH
T ss_pred eEEEEEeCCCCCCCCCCceeeECCeEhHHHHHHHHHHhc-CCCEEEEECCHHHHHHHHHHcCCeEEEeCCCCCChHHHHH
Confidence 46999999999999999999999999999999 999987 4999999999999999988889988765545556778899
Q ss_pred HHHHhhcc-CCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeeeCC-CCCCCCCCCeEEEeCCCccEEeeecCC
Q 028257 129 EALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRGL 206 (211)
Q Consensus 129 ~al~~l~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~~~-~~~~~d~~~~~~v~~~~~~~~~~~~~~ 206 (211)
.|++.+.. +.|++++++||+||+++++|+.+++.+.++++..++...++++ +++..||+.+|++.|.+|+++||||++
T Consensus 81 ~a~~~~~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~at~~~~~~~~~~~~~p~~~kvv~d~~g~~l~fsr~~ 160 (253)
T 4fcu_A 81 EVARIKGWDADDIIVNVQGDEPLLPAQLVQQVAKLLVDKPNCSMSTLCEPIHALDEFQRDSIVKVVMSKQNEALYFSRAT 160 (253)
T ss_dssp HHHHHHTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHCTTCSEEEEEEECCCHHHHHCTTSCEEEECTTSBEEEEESSC
T ss_pred HHHHhcCcCCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeEEcCCHHHccCCCccEEEECCCCeEEEecCCC
Confidence 99988742 4689999999999999999999999997654433333444443 245678899999999999999999999
Q ss_pred CCCC
Q 028257 207 IPYN 210 (211)
Q Consensus 207 ~~~~ 210 (211)
+|+.
T Consensus 161 ip~~ 164 (253)
T 4fcu_A 161 IPYD 164 (253)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 9875
No 3
>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*
Probab=99.96 E-value=1.1e-28 Score=210.09 Aligned_cols=166 Identities=42% Similarity=0.696 Sum_probs=136.8
Q ss_pred CCCCCCcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCC
Q 028257 43 SKNFRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRN 122 (211)
Q Consensus 43 ~~~~~m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g 122 (211)
++...|++.+||||||.|+|||+|+|++++|||||+|+++++.+++ +++|+|+++++++.++++.+++++++..+...+
T Consensus 12 ~~~~~M~~~aIIlA~G~stRlp~K~L~~i~GkPmi~~~l~~l~~~~-i~~IvV~t~~~~i~~~~~~~g~~v~~~~~~~~~ 90 (264)
T 3k8d_A 12 PRGSHMSFVVIIPARYASTRLPGKPLVDINGKPMIVHVLERARESG-AERIIVATDHEDVARAVEAAGGEVCMTRADHQS 90 (264)
T ss_dssp ------CCEEEEECCSCCSSSTTGGGCEETTEEHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTTCEEEECCTTCCS
T ss_pred cCCCCCceEEEEEcCCCCCCCCCcceeeECCeEHHHHHHHHHHhCC-CCEEEEECCHHHHHHHHHHcCCEEEEecCCCCC
Confidence 4566788999999999999999999999999999999999999985 899999999999999888889988776555567
Q ss_pred ChHHHHHHHHhhc-cCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeeeCC-CCCCCCCCCeEEEeCCCccEE
Q 028257 123 GTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAI 200 (211)
Q Consensus 123 ~~~si~~al~~l~-~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~~~-~~~~~d~~~~~~v~~~~~~~~ 200 (211)
++.++..+++.+. .+.|++++++||+||++++.++.+++.+.+. ++.+++...+++ +++..|++.+|++.|.+|+++
T Consensus 91 Gt~~i~~~~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~-~~~~~~~~~~v~d~~~~~~p~~vkVv~d~~g~~l 169 (264)
T 3k8d_A 91 GTERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQR-QVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYAL 169 (264)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEECTTCTTCCHHHHHHHHHHHHTS-SCSEEEEEEECCSHHHHTCTTSCEEEECTTSBEE
T ss_pred CHHHHHHHHHHhccCCCCEEEEEcCCcccCCHHHHHHHHHHHhhc-CCCEEEEEEEcCCHHHccCCCceEEEECCCCeEE
Confidence 7778888888773 2468999999999999999999999998643 333444455543 356778999999999999999
Q ss_pred eeecCCCCCC
Q 028257 201 YFSRGLIPYN 210 (211)
Q Consensus 201 ~~~~~~~~~~ 210 (211)
+|||+++|+.
T Consensus 170 ~fsr~~ip~~ 179 (264)
T 3k8d_A 170 YFSRATIPWD 179 (264)
T ss_dssp EEESSCCSCC
T ss_pred EEecCCCCCC
Confidence 9999998864
No 4
>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13
Probab=99.96 E-value=2.9e-28 Score=205.20 Aligned_cols=161 Identities=45% Similarity=0.743 Sum_probs=136.2
Q ss_pred CcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCCChHHH
Q 028257 48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERC 127 (211)
Q Consensus 48 m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g~~~si 127 (211)
|++.+||||||.|+|||+|+|++++|||||+|+++++.+++ +++|+|+++++++.+++.++++++++..+....++.++
T Consensus 1 M~~~aiIlA~G~stRlp~K~L~~i~GkPli~~~l~~l~~~~-~~~ivVv~~~~~i~~~~~~~g~~v~~~~~~~~~Gt~~~ 79 (252)
T 3oam_A 1 MSFTVVIPARYQSTRLPGKPLADIGGKPMIQWVYEQAMQAG-ADRVIIATDDERVEQAVQAFGGVVCMTSPNHQSGTERL 79 (252)
T ss_dssp CCEEEEEECCCCCSSSTTGGGCEETTEEHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTTCEEEECCTTCCSHHHHH
T ss_pred CceEEEEecCcCCCCCCCcceeeECCEEHHHHHHHHHHhCC-CCeEEEECCHHHHHHHHHHcCCEEEEcCCCCCCcHHHH
Confidence 68999999999999999999999999999999999999985 89999999999999998888998877655556777778
Q ss_pred HHHHHhhc-cCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeeeCC-CCCCCCCCCeEEEeCCCccEEeeecC
Q 028257 128 NEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRG 205 (211)
Q Consensus 128 ~~al~~l~-~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~~~-~~~~~d~~~~~~v~~~~~~~~~~~~~ 205 (211)
..+++.+. .+.|.+++++||+||+++++++.+++.+.++ ++.+++..+++. ++...|++..+++.|.+|++++|||+
T Consensus 80 ~~~~~~l~~~~~d~vlv~~gD~Pli~~~~i~~l~~~~~~~-~~~~~~~~~~v~~~~~~~~p~~g~vv~d~~g~v~~fsr~ 158 (252)
T 3oam_A 80 AEVVAKMAIPADHIVVNVQGDEPLIPPAIIRQVADNLAAC-SAPMATLAVEIEDEAEVFNPNAVKVITDKSGYALYFSRA 158 (252)
T ss_dssp HHHHHHTTCCTTSEEEECCTTCTTCCHHHHHHHHHHHHHS-SCSEEEEEEEECCHHHHTCTTSCEEEECTTSBEEEEESS
T ss_pred HHHHHhcCcCCCCEEEEEeCCeeecCHHHHHHHHHHHHhc-CCCEEEEeeecCCHHHhhCCCceEEEECCCCeEEEEeCC
Confidence 88888773 2468999999999999999999999998653 223344444543 45677888999999999999999999
Q ss_pred CCCCC
Q 028257 206 LIPYN 210 (211)
Q Consensus 206 ~~~~~ 210 (211)
++|+.
T Consensus 159 ~i~~~ 163 (252)
T 3oam_A 159 TIPWD 163 (252)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 98864
No 5
>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A*
Probab=99.93 E-value=1.3e-24 Score=180.68 Aligned_cols=157 Identities=39% Similarity=0.677 Sum_probs=126.9
Q ss_pred CcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCCChHHH
Q 028257 48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERC 127 (211)
Q Consensus 48 m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g~~~si 127 (211)
|++.+||||||.|+|||+|+|++++|+|||+|+++++.+++.+++|+|+++++++.+++.+++++++.+++...+++.++
T Consensus 1 m~~~aiIlA~G~~~R~~~K~l~~i~g~pli~~~i~~~~~~~~~~~ivvv~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~ 80 (245)
T 1h7e_A 1 SKAVIVIPARYGSSRLPGKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDPRVEQAVQAFGGKAIMTRNDHESGTDRL 80 (245)
T ss_dssp CCEEEEEECCSCCSSSTTGGGCEETTEEHHHHHHHHHHTCTTCCEEEEEESCHHHHHHHHHTTCEEEECCSCCSSHHHHH
T ss_pred CCeEEEEEcCCcCCCCCCCcccccCCchHHHHHHHHHHhCCCCCeEEEECCcHHHHHHHHHcCCeEEeCCCccCCcHHHH
Confidence 67899999999999999999999999999999999999986569999999988888888888888877654555667777
Q ss_pred HHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhC--CCeEEEEeeeeCCCCCCCCCCCeEEEeCCCccEEeeecC
Q 028257 128 NEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA--PDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRG 205 (211)
Q Consensus 128 ~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~--~d~vv~v~~~~~~~~~~~d~~~~~~v~~~~~~~~~~~~~ 205 (211)
..+++.+ +.|++++++||+||++++.++.+++.+.++ .+.++.+. +.++....+++.++++.+.+|++.+|+++
T Consensus 81 ~~~~~~~--~~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 156 (245)
T 1h7e_A 81 VEVMHKV--EADIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLCH--AISAAEAAEPSTVKVVVNTRQDALYFSRS 156 (245)
T ss_dssp HHHHHHS--CCSEEEECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEEE--EECHHHHTCTTSCEEEECTTCBEEEEESS
T ss_pred HHHHHhC--CCCEEEEEcCCcCcCCHHHHHHHHHHHHhCCCCCEEEEee--cCCHHHhcCCCCcEEEECCCCcEEEeecC
Confidence 7888877 468999999999999999999999988654 45544433 22222223556778777889999999886
Q ss_pred CCC
Q 028257 206 LIP 208 (211)
Q Consensus 206 ~~~ 208 (211)
..|
T Consensus 157 ~~~ 159 (245)
T 1h7e_A 157 PIP 159 (245)
T ss_dssp CSS
T ss_pred CCC
Confidence 554
No 6
>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A
Probab=99.91 E-value=1e-23 Score=173.71 Aligned_cols=151 Identities=20% Similarity=0.242 Sum_probs=114.5
Q ss_pred CCcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCc----ccCC
Q 028257 47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSE----SCRN 122 (211)
Q Consensus 47 ~m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~----~~~g 122 (211)
.|++.+||||||.|+||++|+|++++|+|||+|+++++.+++.+++|+|+++++++.+++++++++++.++. ...|
T Consensus 2 ~m~~~aiIlA~G~g~R~~~K~l~~i~gkpll~~~l~~~~~~~~~~~ivvv~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g 81 (228)
T 1ezi_A 2 EKQNIAVILARQNSKGLPLKNLRKMNGISLLGHTINAAISSKCFDRIIVSTDGGLIAEEAKNFGVEVVLRPAELASDTAS 81 (228)
T ss_dssp CCEEEEEEECCSSCSSSTTTTTCEETTEEHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHTTCEEEECCC------CH
T ss_pred CCceEEEEecCCCCCCCCCcccceeCCcCHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHcCCEEEeCchHHcCCCCC
Confidence 378899999999999999999999999999999999999886689999999988888888888888766543 2223
Q ss_pred ChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEEeeeeCCCCCCCCCCCeEEEeCCCccEEe
Q 028257 123 GTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 201 (211)
Q Consensus 123 ~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v~~~~~~~~~~~d~~~~~~v~~~~~~~~~ 201 (211)
...++..|++.+..+.|++++++||+||++++.++.+++.+.+ ..+.++++.... . ++....+ .+.+|++..
T Consensus 82 ~~~sv~~~l~~~~~~~d~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~--~----~p~~~~~-~~~~g~~~~ 154 (228)
T 1ezi_A 82 SISGVIHALETIGSNSGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSACPME--H----HPLKTLL-QINNGEYAP 154 (228)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEEEECS--S----CTTSCEE-ECC--CEEE
T ss_pred hHHHHHHHHHHhCCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCEEEEEEecC--C----CcceeeE-EcCCCcEee
Confidence 4568889999884335899999999999999999999988754 345555433221 1 1222222 367777777
Q ss_pred eec
Q 028257 202 FSR 204 (211)
Q Consensus 202 ~~~ 204 (211)
|.+
T Consensus 155 ~~~ 157 (228)
T 1ezi_A 155 MRH 157 (228)
T ss_dssp SSC
T ss_pred ccc
Confidence 755
No 7
>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A*
Probab=99.91 E-value=1.9e-23 Score=175.96 Aligned_cols=158 Identities=45% Similarity=0.744 Sum_probs=123.3
Q ss_pred CcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCCChHHH
Q 028257 48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERC 127 (211)
Q Consensus 48 m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g~~~si 127 (211)
|++.+||||||.|+|||+|+|++++|+|||+|+++++.+++ +++|+|+++++++.++++++++.++.+++...+++.++
T Consensus 1 m~~~aiIlA~G~g~R~~~K~l~~~~gkpli~~~l~~l~~~~-~~~ivvv~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~ 79 (262)
T 1vic_A 1 MSFTVIIPARFASSRLPGKPLADIKGKPMIQHVFEKALQSG-ASRVIIATDNENVADVAKSFGAEVCMTSVNHNSGTERL 79 (262)
T ss_dssp -CCEEEEECCCCCSSSTTGGGCEETTEEHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTTCEEEECCCSSCCHHHHH
T ss_pred CCcEEEEEcCCCCCCCCCCccccCCCeEHHHHHHHHHHhCC-CceEEEECCcHHHHHHHHhcCCEEEECCccccCChHHH
Confidence 56789999999999999999999999999999999999884 59999999988888888888888877654445566666
Q ss_pred HHHHHhhcc-CCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEEeeeeCCC-CCCCCCCCeEEEeCCCccEEeeec
Q 028257 128 NEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSR 204 (211)
Q Consensus 128 ~~al~~l~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v~~~~~~~-~~~~d~~~~~~v~~~~~~~~~~~~ 204 (211)
..+++.+.. +.+++++++||+||++++.++.+++.+.+ ..+.++.+. +... ++..++..++++.+.+|++++|++
T Consensus 80 ~~~~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~v~~f~~ 157 (262)
T 1vic_A 80 AEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAV--KIHDAEELFNPNAVKVLTDKDGYVLYFSR 157 (262)
T ss_dssp HHHHHHTTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEE--ECCCHHHHTCTTSCEEEECTTSBEEEEES
T ss_pred HHHHHHhccCCCCEEEEEeCCcCccCHHHHHHHHHHHHhcCCCEEEEEE--ecCCHHHhcCCCceEEEECCCCCEeeeec
Confidence 666666532 36899999999999999999999998854 345544332 3211 123345667888888999999998
Q ss_pred CCCC
Q 028257 205 GLIP 208 (211)
Q Consensus 205 ~~~~ 208 (211)
+..|
T Consensus 158 ~~~~ 161 (262)
T 1vic_A 158 SVIP 161 (262)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 7654
No 8
>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus}
Probab=99.91 E-value=5e-23 Score=169.70 Aligned_cols=153 Identities=36% Similarity=0.591 Sum_probs=120.2
Q ss_pred CcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCCChHHH
Q 028257 48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERC 127 (211)
Q Consensus 48 m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g~~~si 127 (211)
|++.+||||||.|+||++|+|++++|+|||+|+++++.++ +++|+|+++++++.+++.++ +.+++.++...+++.+.
T Consensus 1 m~~~aiIlA~G~g~R~~~K~l~~i~g~pli~~~l~~~~~~--~~~i~v~~~~~~i~~~~~~~-~~~~~~~~~~~~g~~~~ 77 (234)
T 2y6p_A 1 MRRAVIIPARLGSTRLKEKPLKNLLGKPLIRWVVEGLVKT--GERVILATDSERVKEVVEDL-CEVFLTPSDLPSGSDRV 77 (234)
T ss_dssp -CEEEEEECCSCCTTTTTGGGCEETTEEHHHHHHHHHHTT--TSCEEEEESCHHHHHHHTTT-SEEEECCTTCCSHHHHH
T ss_pred CceEEEEEcCCCCCCCCCCcceeECCEEHHHHHHHHHHHh--CCEEEEECChHHHHHHHHhc-eEEEECCcccccchHHH
Confidence 5788999999999999999999999999999999999986 89999999888888777666 67766655445666666
Q ss_pred HHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeeeCCCCCCCCCCCeEEEeCCCccEEeeecCCC
Q 028257 128 NEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLI 207 (211)
Q Consensus 128 ~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~~~~~~~~d~~~~~~v~~~~~~~~~~~~~~~ 207 (211)
..+++.+ +.|++++++||+||++++.++++++.+.++.+ ++++... ...+..+++.++++.+.+|++..|.+++.
T Consensus 78 ~~~~~~~--~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~g~v~~~~e~~~ 152 (234)
T 2y6p_A 78 LYVVRDL--DVDLIINYQGDEPFVYEEDIKLIFRELEKGER-VVTLARK--DKEAYERPEDVKVVLDREGYALYFSRSPI 152 (234)
T ss_dssp HHHHTTC--CCSEEEECCTTCCCCCHHHHHHHHHHHHHTCS-EEEEEEE--CSGGGGCTTSCEEEECTTSBEEEEESSCC
T ss_pred HHHHHhC--CCCEEEEecCCcCcCCHHHHHHHHHHHHhCCC-eEEEecC--CHHHhcCCCceEEEEcCCCCEeeeecCCC
Confidence 6777766 46899999999999999999999998865444 3333322 11223355677777788999999988764
Q ss_pred C
Q 028257 208 P 208 (211)
Q Consensus 208 ~ 208 (211)
+
T Consensus 153 ~ 153 (234)
T 2y6p_A 153 P 153 (234)
T ss_dssp S
T ss_pred C
Confidence 4
No 9
>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A*
Probab=99.89 E-value=5e-23 Score=171.84 Aligned_cols=149 Identities=23% Similarity=0.317 Sum_probs=114.0
Q ss_pred cEEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHc--CCeEeeCCcccCCC
Q 028257 49 RVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF--GADVIMTSESCRNG 123 (211)
Q Consensus 49 ~i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~--~v~vi~~~~~~~g~ 123 (211)
++.+||||||.|+||+ +|+|++++|+|||+|+++++.+++.+++|+|+++++++..+.+.. .+.++.. ..+.
T Consensus 7 ~~~aIIlAaG~g~Rmg~~~~K~l~~l~Gkpll~~~l~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~~v~~v~g---g~~r 83 (231)
T 3q80_A 7 EVVAIVPAAGSGERLAVGVPKAFYQLDGQTLIERAVDGLLDSGVVDTVVVAVPADRTDEARQILGHRAMIVAG---GSNR 83 (231)
T ss_dssp CEEEEEECCCCCTTTCSSSCGGGCEETTEEHHHHHHHHHHHTSCCCEEEEEECGGGHHHHHHHHGGGCEEEEC---CSSH
T ss_pred ceEEEEECCCCCccCCCCCCceEEEECCeEHHHHHHHHHHhCCCCCeEEEECChHHHHHHHHHhcCCeEEEcC---CCch
Confidence 4789999999999998 599999999999999999999887799999999876543332211 3444321 1123
Q ss_pred hHHHHHHHHhhccC--CCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEE-EEeeee-C---CC----CCCCCCCCeEEE
Q 028257 124 TERCNEALQKLEKK--YDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF-STAVTS-L---KP----EDAFDPNRVKCV 192 (211)
Q Consensus 124 ~~si~~al~~l~~~--~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv-~v~~~~-~---~~----~~~~d~~~~~~v 192 (211)
..++++|++.+... .|++++++||+||+++++|+++++.+.++.++++ ++++++ + +. ..+.||+.++.+
T Consensus 84 ~~sv~~gl~~~~~~~~~d~Vlv~~~d~Pli~~~~i~~li~~~~~~~~~~i~~~p~~dt~~~~~~~g~v~~~~~r~~l~~~ 163 (231)
T 3q80_A 84 TDTVNLALTVLSGTAEPEFVLVHDAARALTPPALVARVVEALRDGYAAVVPVLPLSDTIKAVDANGVVLGTPERAGLRAV 163 (231)
T ss_dssp HHHHHHHHGGGC---CCSEEEECCTTCTTCCHHHHHHHHHHHHTTCSEEEEEECCSSCEEEECTTSBEEECCCGGGEEEE
T ss_pred HHHHHHHHHHhhhcCCCCEEEEEcCCcCCCCHHHHHHHHHHHhhcCCeEEEEEeccCCEEEEcCCCcEEEecchhheEEE
Confidence 57899999988532 5899999999999999999999999876345554 444444 2 22 247899999999
Q ss_pred eCCCccEE
Q 028257 193 VDNHGYAI 200 (211)
Q Consensus 193 ~~~~~~~~ 200 (211)
|+||.|..
T Consensus 164 qTPq~F~~ 171 (231)
T 3q80_A 164 QTPQGFTT 171 (231)
T ss_dssp CSCEEEEH
T ss_pred cCCcEEEH
Confidence 99999854
No 10
>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13
Probab=99.89 E-value=1.5e-22 Score=167.41 Aligned_cols=127 Identities=26% Similarity=0.345 Sum_probs=107.7
Q ss_pred CCcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCc----ccCC
Q 028257 47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSE----SCRN 122 (211)
Q Consensus 47 ~m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~----~~~g 122 (211)
+|++.+||||||.|+||++|+|++++|+|||+|+++++.+++.+++|+|+++++++.+++++++++++.+++ ...+
T Consensus 1 ~~~~~aiIlA~G~s~R~~~K~l~~i~Gkpli~~~i~~~~~~~~~~~ivv~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~ 80 (229)
T 1qwj_A 1 PPHLAALVLARGGSKGIPLKNIKRLAGVPLIGWVLRAALDAGVFQSVWVSTDHDEIENVAKQFGAQVHRRSSETSKDSST 80 (229)
T ss_dssp CCCEEEEEECCSCCSSSSCTTTSEETTEEHHHHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTTCEEEECCGGGSSTTCC
T ss_pred CCcEEEEEEcCCCCCCCCCcccceECCEEHHHHHHHHHHhCCCcCEEEEECChHHHHHHHHHcCCEEEeChhhhcCCCCc
Confidence 368899999999999999999999999999999999999886679999999988888888888998877653 2345
Q ss_pred ChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEEe
Q 028257 123 GTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTA 174 (211)
Q Consensus 123 ~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v~ 174 (211)
++.++..|++.+. +.|++++++||+||+++++++.+++.+.+ ..+.++++.
T Consensus 81 ~~~~v~~al~~~~-~~d~vlv~~~D~Pli~~~~i~~l~~~~~~~~~~~~~~~~ 132 (229)
T 1qwj_A 81 SLDAIVEFLNYHN-EVDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSVV 132 (229)
T ss_dssp HHHHHHHHHTTCT-TCSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEEE
T ss_pred HHHHHHHHHHhcC-CCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEEe
Confidence 5678888988873 46899999999999999999999998864 346565554
No 11
>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0
Probab=99.88 E-value=4.8e-22 Score=166.37 Aligned_cols=152 Identities=17% Similarity=0.227 Sum_probs=109.0
Q ss_pred CCcEEEEEecCCCCCCCCC----ccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHH---HHHHHHHcCC--eEeeCC
Q 028257 47 RSRVVGIIPARFASSRFEG----KPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEK---IAECCQQFGA--DVIMTS 117 (211)
Q Consensus 47 ~m~i~aIIlA~G~ssRlg~----K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~---i~~~~~~~~v--~vi~~~ 117 (211)
||++.+||||||.|+||++ |++++++|+|||+|+++++.+++.+++|+|+++++. +.+.++.++. .+....
T Consensus 1 M~~~~aIIlAaG~g~Rm~~~~~pK~l~~l~Gkpll~~~l~~~~~~~~~~~ivvv~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (246)
T 3f1c_A 1 MSLIYAQILAGGKGTRMGNVSMPKQFLPLNGKPIIVHTVEKFILNTRFDKILISSPKEWMNHAEDNIKKYISDDRIVVIE 80 (246)
T ss_dssp -CCEEEEEECC-----C-CSSCCGGGSEETTEEHHHHHHHHHHTCTTCSEEEEEECGGGHHHHHHHHHHHCCCTTEEEEE
T ss_pred CCccEEEEECCccccccCCCCCCCeEEEECCeeHHHHHHHHHHcCCCCCEEEEEeCHHHHHHHHHHHHHhCCCCCEEEEC
Confidence 5678999999999999974 999999999999999999998866999999998654 3445555432 221111
Q ss_pred cccCCChHHHHHHHHhhcc-----CCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeee-C---CC----CCCC
Q 028257 118 ESCRNGTERCNEALQKLEK-----KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTS-L---KP----EDAF 184 (211)
Q Consensus 118 ~~~~g~~~si~~al~~l~~-----~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~-~---~~----~~~~ 184 (211)
...+...++..|++.+.. +.+++++++||+||+++++++++++.+.++...+.++++++ + +. ..+.
T Consensus 81 -~~~~~~~sv~~al~~l~~~~~~~~~~~vlv~~~d~Pli~~~~i~~li~~~~~~~a~i~~~~~~d~i~~~~~~~~v~~~~ 159 (246)
T 3f1c_A 81 -GGEDRNETIMNGIRFVEKTYGLTDDDIIVTHDAVRPFLTHRIIEENIDAALETGAVDTVIEALDTIVESSNHEVITDIP 159 (246)
T ss_dssp -CCSSHHHHHHHHHHHHHHHTCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHTSEEEEEEECSSCEEECSSSSBCCBCC
T ss_pred -CCCchHHHHHHHHHHHhhhhcCCCCCEEEEecCcccCCCHHHHHHHHHHHHhcCCEEEEEeccceEEEecCCCeEEEec
Confidence 112446788999998853 36899999999999999999999999977544444554443 1 11 2467
Q ss_pred CCCCeEEEeCCCccE
Q 028257 185 DPNRVKCVVDNHGYA 199 (211)
Q Consensus 185 d~~~~~~v~~~~~~~ 199 (211)
+++.+..+|+||.|.
T Consensus 160 ~r~~l~~~qtpq~f~ 174 (246)
T 3f1c_A 160 VRDHMYQGQTPQSFN 174 (246)
T ss_dssp CGGGEEEEEEEEEEE
T ss_pred ChHHhhhhcCCceeE
Confidence 788899999999775
No 12
>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP}
Probab=99.86 E-value=7.8e-21 Score=152.31 Aligned_cols=123 Identities=19% Similarity=0.292 Sum_probs=100.1
Q ss_pred CcEEEEEecCCCCCCCC-CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHHcCCeEeeCCcccCCCh
Q 028257 48 SRVVGIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCRNGT 124 (211)
Q Consensus 48 m~i~aIIlA~G~ssRlg-~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~~~v~vi~~~~~~~g~~ 124 (211)
|++.+||||||.|+||+ +|++++++|+|||+|+++++..++ +++|+|++++ +++.+++..+++.++.++....|+.
T Consensus 4 ~~~~~iIlA~G~~~R~g~~K~l~~~~g~pli~~~l~~l~~~~-~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 82 (199)
T 2waw_A 4 SRVTGVVLAAGYSRRLGTPKQLLPLGDTTLLGATLAMARRCP-FDQLIVTLGGAADEVLEKVELDGLDIVLVDDAGLGCS 82 (199)
T ss_dssp CCEEEEEEESSCCTTTTSCGGGCEETTEEHHHHHHHHHHTSS-CSEEEEEECTTHHHHHHHSCCTTSEEEECCCCCTTCC
T ss_pred CceEEEEECCCCCCCCCCCEEeCEeCccCHHHHHHHHHHhCC-CCcEEEEeCCCHHHHHHHhccCCCEEEECCCcccCHH
Confidence 56899999999999995 799999999999999999999885 8999999874 4555555556777766554445667
Q ss_pred HHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEE
Q 028257 125 ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFS 172 (211)
Q Consensus 125 ~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~ 172 (211)
.++..|++.+..+.+++++++||+||++++.++.+++. ....+.+++
T Consensus 83 ~~i~~al~~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~-~~~~~~~~~ 129 (199)
T 2waw_A 83 SSLKSALTWVDPTAEGIVLMLGDQPGITASAVASLIAG-GRGATIAVC 129 (199)
T ss_dssp CHHHHHHHTSCTTCSEEEEEETTCTTCCHHHHHHHHHH-HTTCSEEEE
T ss_pred HHHHHHHHhhhccCCeEEEEeCCcccCCHHHHHHHHhh-cCCCCEEEE
Confidence 88999999874236899999999999999999999988 544454443
No 13
>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A
Probab=99.84 E-value=1.3e-20 Score=150.87 Aligned_cols=122 Identities=18% Similarity=0.327 Sum_probs=97.0
Q ss_pred CcEEEEEecCCCCCCCC-CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHHcCCeEeeCCcccCCCh
Q 028257 48 SRVVGIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCRNGT 124 (211)
Q Consensus 48 m~i~aIIlA~G~ssRlg-~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~~~v~vi~~~~~~~g~~ 124 (211)
|++.+||||||.|+||+ +|++++++|+|||+|+++++.+++ +++|+|++++ +++.+++..++++++.++....|..
T Consensus 4 ~~~~~iIlA~G~~~R~g~~K~l~~~~g~pll~~~l~~l~~~~-~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 82 (197)
T 2wee_A 4 TQITGVVLAAGRSNRLGTPKQLLPYRDTTVLGATLDVARQAG-FDQLILTLGGAASAVRAAMALDGTDVVVVEDVERGCA 82 (197)
T ss_dssp SEEEEEEEECCCCTTTSSCGGGSEETTEEHHHHHHHHHHHTT-CSEEEEEECTTHHHHHHHSCCTTSEEEECC----CCH
T ss_pred CceEEEEECCCCcccCCCCeEcCeeCCccHHHHHHHHHHhcC-CCcEEEEeCCCHHHHHHHhccCCCEEEECCCcccCHH
Confidence 67889999999999995 699999999999999999999874 8999999874 4555555456777776654445778
Q ss_pred HHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEE
Q 028257 125 ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171 (211)
Q Consensus 125 ~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv 171 (211)
.++..|++.+..+.+++++++||+||++++.++.+++. ....+.++
T Consensus 83 ~~i~~al~~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~-~~~~~i~~ 128 (197)
T 2wee_A 83 ASLRVALARVHPRATGIVLMLGDQPQVAPATLRRIIDV-GPATEIMV 128 (197)
T ss_dssp HHHHHHHTTSCTTEEEEEEEETTCTTCCHHHHHHHHHH-GGGSSEEE
T ss_pred HHHHHHHHHhcccCCeEEEEeCCcCCCCHHHHHHHHhh-cCCCCEEE
Confidence 89999998873235789999999999999999999988 54444443
No 14
>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A*
Probab=99.82 E-value=6.6e-20 Score=150.53 Aligned_cols=119 Identities=19% Similarity=0.259 Sum_probs=89.6
Q ss_pred CCcEEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHH--HHH-HHHHcCCeEeeCCccc
Q 028257 47 RSRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEK--IAE-CCQQFGADVIMTSESC 120 (211)
Q Consensus 47 ~m~i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~--i~~-~~~~~~v~vi~~~~~~ 120 (211)
||++.+||||||.|+||+ +|+|++++|+|||+|+++++.+++++++|+|+++++. +.+ +...++.++.+.. ..
T Consensus 2 ~~~~~aiIlAaG~g~R~~~~~~K~l~~i~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~~~~~v~~~~-~~ 80 (228)
T 2yc3_A 2 EKSVSVILLAGGQGKRMKMSMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEESIDVDLSFAI-PG 80 (228)
T ss_dssp TTCEEEEEECCCCC-------CGGGSEETTEEHHHHHHHHHHHCTTEEEEEEECCGGGHHHHHTTTTTSSSEEEEEC-CC
T ss_pred CcceEEEEECCccccccCCCCCccEeEECCEEHHHHHHHHHHcCCCCCeEEEEEChHHHHHHHHHHHhCCCcEEEEC-CC
Confidence 457889999999999998 7999999999999999999998767899999998643 322 2223333442211 12
Q ss_pred CCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhC
Q 028257 121 RNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA 166 (211)
Q Consensus 121 ~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~ 166 (211)
.+...++..|++.+..+.+.++++++|+||+++++++.+++.+.++
T Consensus 81 ~~~~~sv~~al~~~~~~~~~vl~~d~d~P~~~~~~i~~l~~~~~~~ 126 (228)
T 2yc3_A 81 KERQDSVYSGLQEIDVNSELVCIHDSARPLVNTEDVEKVLKDGSAV 126 (228)
T ss_dssp SSHHHHHHHHHTTSCTTCSEEEEEETTCTTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhccCCCEEEEecCCCccCCHHHHHHHHHHHHhc
Confidence 4666889999988753468999999999999999999999988653
No 15
>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus}
Probab=99.82 E-value=2.7e-20 Score=150.76 Aligned_cols=118 Identities=20% Similarity=0.209 Sum_probs=92.0
Q ss_pred CcEEEEEecCCCCCCCC-CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHHcCCeEeeCCcccCCCh
Q 028257 48 SRVVGIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCRNGT 124 (211)
Q Consensus 48 m~i~aIIlA~G~ssRlg-~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~~~v~vi~~~~~~~g~~ 124 (211)
|++.+||||||.|+||+ +|+|++++|+|||+|+++++... +++|++++ +.+.+++. .++ ++.++....|+.
T Consensus 1 M~~~~iIlAgG~g~Rmg~~K~l~~i~g~pll~~~l~~l~~~----~ivvv~~~~~~~~~~~~~-~~~-~v~~~~~~~G~~ 74 (197)
T 3d5n_A 1 MNIGVIILAAGEGKRFGGDKLLAKIDNTPIIMRTIRIYGDL----EKIIIVGKYVNEMLPLLM-DQI-VIYNPFWNEGIS 74 (197)
T ss_dssp CCEEEEEECSCCTTCCCSSGGGSBSSSSBHHHHHHHHTTTS----BCCEEECTTHHHHGGGCT-TSC-EEECTTGGGCHH
T ss_pred CceEEEEECCcCcccCCCCeeeCEeCceEHHHHHHHHHHhC----CEEEEECCCHHHHHHHhc-CCE-EEECCCCCCCHH
Confidence 56889999999999998 79999999999999999999764 66777654 34443333 456 665554445778
Q ss_pred HHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEE
Q 028257 125 ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFS 172 (211)
Q Consensus 125 ~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~ 172 (211)
.++..|++.+. +.+++++++||+||++++.++.+++.+....+.+++
T Consensus 75 ~si~~al~~~~-~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~ 121 (197)
T 3d5n_A 75 TSLKLGLRFFK-DYDAVLVALGDMPFVTKEDVNKIINTFKPNCKAVIP 121 (197)
T ss_dssp HHHHHHHHHTT-TSSEEEEEETTCCCSCHHHHHHHHHTCCTTCSEEEE
T ss_pred HHHHHHHHhhc-cCCcEEEEeCCccccCHHHHHHHHHHhcCCCcEEEE
Confidence 89999999884 247999999999999999999999887323344444
No 16
>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A*
Probab=99.82 E-value=1.1e-19 Score=147.88 Aligned_cols=119 Identities=20% Similarity=0.250 Sum_probs=96.1
Q ss_pred CCcEEEEEecCCCCCCCC--CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCccc-CCC
Q 028257 47 RSRVVGIIPARFASSRFE--GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESC-RNG 123 (211)
Q Consensus 47 ~m~i~aIIlA~G~ssRlg--~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~-~g~ 123 (211)
||++.+||||||.|+||+ +|++++++|+|||+|+++++.. .+++|+|+++.+. ..+ ..+++.++.++.+. .|.
T Consensus 4 mm~~~~iILAgG~s~Rmg~~~K~ll~i~G~pli~~~l~~l~~--~~~~ivvv~~~~~-~~~-~~~~~~~v~~~~~~~~G~ 79 (201)
T 1e5k_A 4 MTTITGVVLAGGKARRMGGVDKGLLELNGKPLWQHVADALMT--QLSHVVVNANRHQ-EIY-QASGLKVIEDSLADYPGP 79 (201)
T ss_dssp CCSEEEEEECCCCCSSSCSSCGGGSEETTEEHHHHHHHHHHH--HCSCEEEECSSSH-HHH-HTTSCCEECCCTTCCCSH
T ss_pred CCcceEEEEcCCCCCcCCCCCCceeeECceeHHHHHHHHHHh--hCCEEEEEcCCcH-HHH-hhcCCeEEecCCCCCCCH
Confidence 678999999999999997 6999999999999999999985 4899999997654 223 34677776554332 466
Q ss_pred hHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEE
Q 028257 124 TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFS 172 (211)
Q Consensus 124 ~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~ 172 (211)
..++..|++.+ +.+++++++||+||++++.++.+++. ....+.+++
T Consensus 80 ~~si~~~l~~~--~~~~vlv~~~D~P~i~~~~i~~l~~~-~~~~~~~~~ 125 (201)
T 1e5k_A 80 LAGMLSVMQQE--AGEWFLFCPCDTPYIPPDLAARLNHQ-RKDAPVVWV 125 (201)
T ss_dssp HHHHHHHHHHC--CSSEEEEEETTCTTCCTTHHHHHHHT-CTTCSEEEE
T ss_pred HHHHHHHHHhC--CCCcEEEEeCCcCcCCHHHHHHHHhh-cCCCCEEEE
Confidence 78999999988 36899999999999999999999987 444444443
No 17
>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A*
Probab=99.82 E-value=3.5e-19 Score=145.38 Aligned_cols=122 Identities=25% Similarity=0.363 Sum_probs=93.4
Q ss_pred CcEEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHc-CCeEeeCCcccCCC
Q 028257 48 SRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF-GADVIMTSESCRNG 123 (211)
Q Consensus 48 m~i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~-~v~vi~~~~~~~g~ 123 (211)
|++.+||||||.|+||+ +|++++++|+|||+|+++++.+++.+++|+|+++++....+.+.. +..+.+..+ ..+.
T Consensus 1 m~~~~vIlA~G~g~R~~~~~~K~l~~~~g~pli~~~l~~l~~~~~~~~i~vv~~~~~~~~~~~~~~~~~v~~~~~-~~~~ 79 (223)
T 2xwl_A 1 MATVAVVPAAGSGERLRAGRPKAFVTLGGTPLLEHALSGLRASGVIDRIVIAVPPALTDESKLVFGGEDSVIVSG-GVDR 79 (223)
T ss_dssp -CEEEEEECCCCCGGGTSSSCGGGSEETTEEHHHHHHHHHHHHSCCSEEEEEECGGGHHHHHHHTCBTTEEEEEC-CSSH
T ss_pred CceEEEEECCccCcccCCCCCCeeeEECCeEHHHHHHHHHhcCCCCCeEEEEEcccHHHHHHHHhccCCeEEEcC-CCCH
Confidence 57889999999999998 799999999999999999999875689999999876533333322 222312111 2345
Q ss_pred hHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHH-HhCCCeEEE
Q 028257 124 TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL-QAAPDAVFS 172 (211)
Q Consensus 124 ~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~-~~~~d~vv~ 172 (211)
..++..|++.+. +.+.+++++||+||++++.++.+++.+ .+ .+.++.
T Consensus 80 ~~~i~~al~~~~-~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~-~~~~i~ 127 (223)
T 2xwl_A 80 TESVALALEAAG-DAEFVLVHDAARALTPPALIARVVAALKEG-HSAVVP 127 (223)
T ss_dssp HHHHHHHHTTCT-TCSEEEECCTTCTTCCHHHHHHHHHHHHHT-CSEEEE
T ss_pred HHHHHHHHHhcC-CCCEEEEEcCCcccCCHHHHHHHHHHHhhc-CCeEEE
Confidence 678889998873 467899999999999999999999988 44 455543
No 18
>3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus}
Probab=99.82 E-value=2.6e-19 Score=146.98 Aligned_cols=115 Identities=18% Similarity=0.216 Sum_probs=94.8
Q ss_pred EEEEecCCCCCCCC-CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc-HHHHHHHHHcCCeEeeCCcccCCChHHHH
Q 028257 51 VGIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD-EKIAECCQQFGADVIMTSESCRNGTERCN 128 (211)
Q Consensus 51 ~aIIlA~G~ssRlg-~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~-e~i~~~~~~~~v~vi~~~~~~~g~~~si~ 128 (211)
.+||||||.|+||| +|++++++|+|||+|+++++... +|+|++++ +.+..+.+.++++++.++....|+..++.
T Consensus 2 ~aiILAgG~s~Rmg~~K~ll~~~G~pli~~~~~~l~~~----~vvvv~~~~~~~~~~~~~~~~~~v~d~~~~~G~~~si~ 77 (208)
T 3ngw_A 2 KVAVLVGGVGRRIGMEKTEVMLCGKKLIEWVLEKYSPF----QTVFVCRDEKQAEKLSSRYEAEFIWDLHKGVGSIAGIH 77 (208)
T ss_dssp EEEEECCCCCTTTTSCGGGCEETTEEHHHHHHHHHTTS----EEEEECSSHHHHHHHHTTSCSCEECCTTCCCSHHHHHH
T ss_pred EEEEECCCchhhCCCCCcccEECCeeHHHHHHHHhcCC----CEEEEECCHHHHHHHHHhcCCeEEecCCCCCChHHHHH
Confidence 58999999999997 69999999999999999999864 88888875 44454544478887765544456778999
Q ss_pred HHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEE
Q 028257 129 EALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFST 173 (211)
Q Consensus 129 ~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v 173 (211)
.|++.+ .+++ +++||+||+++++++.+++.+.+ ..+.+++.
T Consensus 78 ~gl~~~---~~~v-v~~~D~P~i~~~~i~~l~~~~~~~~~~~v~~~ 119 (208)
T 3ngw_A 78 AALRHF---GSCV-VAAIDMPFVKPEVLEHLYKEGEKAGCDALIPK 119 (208)
T ss_dssp HHHHHH---SSEE-EEETTCTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHc---CCCE-EEECCccCCCHHHHHHHHHHhhcCCCCEEEEc
Confidence 999988 5788 99999999999999999998863 56666654
No 19
>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A
Probab=99.81 E-value=3e-19 Score=146.68 Aligned_cols=118 Identities=17% Similarity=0.177 Sum_probs=86.6
Q ss_pred CcEEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHHcCC-eEeeCCcccC
Q 028257 48 SRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQFGA-DVIMTSESCR 121 (211)
Q Consensus 48 m~i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~~~v-~vi~~~~~~~ 121 (211)
|++.+||||||.|+||+ +|+|++++|+|||+|+++++.+++.+++|+|+++ .+.+.+ +.+++. .+.+.+ ...
T Consensus 5 ~~~~aiIlA~G~g~R~~~~~~K~l~~~~gkpli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~-~~~~~~~~i~~~~-~~~ 82 (231)
T 1vgw_A 5 RKNIALIPAAGIGVRFGADKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPEDTFADK-VQTAFPQVRVWKN-GGQ 82 (231)
T ss_dssp CCEEEEEECC----------CCSCCEETTEEHHHHHHHHHHTCTTCCEEEEECCTTCSTHHH-HHHHCTTSEEECC-CCS
T ss_pred CceEEEEEcccccccCCCCCCceEeEECCeEHHHHHHHHHHcCCCCCeEEEEECccHHHHHH-HHhcCCCceEEEc-CCC
Confidence 56889999999999997 6999999999999999999998766999999995 345555 444432 222222 233
Q ss_pred CChHHHHHHHHhhcc-----CCCEEEEEcCCCcCCCHHHHHHHHHHHHhCC
Q 028257 122 NGTERCNEALQKLEK-----KYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167 (211)
Q Consensus 122 g~~~si~~al~~l~~-----~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~ 167 (211)
+...++..|++.+.. +.+.+++++||+||++++.++.+++.+.++.
T Consensus 83 ~~~~si~~~l~~~~~~~~~~~~~~vlv~~~D~p~~~~~~i~~l~~~~~~~~ 133 (231)
T 1vgw_A 83 TRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAA 133 (231)
T ss_dssp SHHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTTCT
T ss_pred cHHHHHHHHHHHHhhhccCCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcC
Confidence 556788889887742 3689999999999999999999999886543
No 20
>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A
Probab=99.80 E-value=1.1e-19 Score=150.26 Aligned_cols=118 Identities=10% Similarity=0.168 Sum_probs=93.3
Q ss_pred CCCcEEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHHcCC-eE-eeCCc
Q 028257 46 FRSRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGA-DV-IMTSE 118 (211)
Q Consensus 46 ~~m~i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~~~v-~v-i~~~~ 118 (211)
.+|++.+||||||.|+||+ +|+|++++|+|||+|+++++.+++.+++|+|++++ +.+.+ +..++. .+ +..+
T Consensus 4 ~~~~~~~iIlA~G~g~R~~~~~~K~l~~i~g~pll~~~i~~l~~~~~~~~ivvv~~~~~~~~~~-~~~~~~~~v~~~~~- 81 (236)
T 1i52_A 4 THLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQ-LPLANHPQITVVDG- 81 (236)
T ss_dssp -CCCEEEEEEECCCCGGGCCSSCGGGSEETTEEHHHHHHHHHHTSTTEEEEEEEECTTCCSGGG-SGGGGCTTEEEEEC-
T ss_pred CCCceeEEEECCcCccccCCCCCcceeeECCEEHHHHHHHHHHhCCCCCeEEEEeCccHHHHHH-HHhcCCCCEEEECC-
Confidence 3678999999999999998 79999999999999999999987668999999874 34444 333332 22 2222
Q ss_pred ccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCC
Q 028257 119 SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167 (211)
Q Consensus 119 ~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~ 167 (211)
..|...++..|++.+. +.+++++++||+||++++.++.+++.+.++.
T Consensus 82 -~~g~~~~i~~al~~~~-~~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~ 128 (236)
T 1i52_A 82 -GDERADSVLAGLKAAG-DAQWVLVHDAARPCLHQDDLARLLALSETSR 128 (236)
T ss_dssp -CSSHHHHHHHHHHTST-TCSEEEECCTTCTTCCHHHHHHHHGGGGTCS
T ss_pred -CCCHHHHHHHHHHhcC-CCCEEEEEcCccccCCHHHHHHHHHHHHhcC
Confidence 2356678999999873 3689999999999999999999999886543
No 21
>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A*
Probab=99.80 E-value=4.5e-19 Score=145.74 Aligned_cols=117 Identities=15% Similarity=0.200 Sum_probs=85.5
Q ss_pred EEEEEecCCCCCCCCC----ccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHH---HHHHHHHcCCeEeeCCcc---
Q 028257 50 VVGIIPARFASSRFEG----KPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEK---IAECCQQFGADVIMTSES--- 119 (211)
Q Consensus 50 i~aIIlA~G~ssRlg~----K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~---i~~~~~~~~v~vi~~~~~--- 119 (211)
+.+||||||.|+||++ |+|++++|+|||+|+++++.+++.+++|+|+++++. +.++++++++.+......
T Consensus 3 ~~~iIlA~G~g~R~~~~~~~K~l~~i~g~pli~~~l~~l~~~~~~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (236)
T 2vsh_A 3 IYAGILAGGTGTRMGISNLPKQFLELGDRPILIHTIEKFVLEPSIEKIVVGVHGDWVSHAEDLVDKYLPLYKERIIITKG 82 (236)
T ss_dssp EEEEEEEC-----------CGGGSEETTEEHHHHHHHHHHTCTTCCCEEEEECGGGHHHHHHHHHHHCGGGGGGEEEEEC
T ss_pred eEEEEeCCccccccCCCCCCCeeeeeCCccHHHHHHHHHHcCCCCCeEEEEeCHHHHHHHHHHHHhccccccCceEEECC
Confidence 5799999999999975 999999999999999999998766999999998644 666666666322111111
Q ss_pred cCCChHHHHHHHHhhc---c--CCCEEEEEcCCCcCCCHHHHHHHHHHHHhC
Q 028257 120 CRNGTERCNEALQKLE---K--KYDIVVNIQGDEPLIEPEIIDGVVKALQAA 166 (211)
Q Consensus 120 ~~g~~~si~~al~~l~---~--~~d~vlv~~~D~Pli~~~~i~~li~~~~~~ 166 (211)
..|...++..|++.+. . +.+++++++||+||++++.++.+++.+.++
T Consensus 83 ~~~~~~~i~~~l~~~~~~~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~ 134 (236)
T 2vsh_A 83 GADRNTSIKNIIEAIDAYRPLTPEDIVVTHDSVRPFITLRMIQDNIQLAQNH 134 (236)
T ss_dssp CSSHHHHHHHHHHHHHHHSCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHS
T ss_pred CCchHHHHHHHHHHHHhhccCCCCCEEEEecCCcccCCHHHHHHHHHHHHhc
Confidence 1345678888988874 2 347999999999999999999999998654
No 22
>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13
Probab=99.80 E-value=5.1e-19 Score=145.74 Aligned_cols=113 Identities=17% Similarity=0.204 Sum_probs=87.5
Q ss_pred EEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHc--CCeEeeCCcccCC--
Q 028257 50 VVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF--GADVIMTSESCRN-- 122 (211)
Q Consensus 50 i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~--~v~vi~~~~~~~g-- 122 (211)
+.+||||||.|+||+ +|+|++++|+|||+|+++++.+++.+++|+|+++++....+.+.. +..+. ...|
T Consensus 14 ~~aiILAaG~s~Rm~~~~~K~l~~i~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~~~~~----~~~gg~ 89 (234)
T 1vpa_A 14 NVAILLAAGKGERMSENVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWFEVVEKRVFHEKVLG----IVEGGD 89 (234)
T ss_dssp EEEEEEECCCCGGGCCSSCGGGCEETTEETTHHHHHHHHHCTTCSEEEEEECGGGHHHHHTTCCCTTEEE----EEECCS
T ss_pred CeEEEEcCcchhhcCCCCCceEEEECCeEHHHHHHHHHHcCCCCCeEEEEEChHHHHHHHHHhccCCceE----EeCCCC
Confidence 569999999999998 799999999999999999999886689999999865432211111 11211 1223
Q ss_pred -ChHHHHHHHHhhcc-CCCEEEEEcCCCcCCCHHHHHHHHHHHHhC
Q 028257 123 -GTERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAA 166 (211)
Q Consensus 123 -~~~si~~al~~l~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~~ 166 (211)
...++..|++.+.. +.+++++++||+||+++++++.+++.+.++
T Consensus 90 ~~~~sv~~al~~~~~~~~~~vlv~~~D~Pli~~~~i~~l~~~~~~~ 135 (234)
T 1vpa_A 90 TRSQSVRSALEFLEKFSPSYVLVHDSARPFLRKKHVSEVLRRARET 135 (234)
T ss_dssp SHHHHHHHHHHHHGGGCCSEEEEEETTSCCCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhhhcCCCEEEEecCcccCCCHHHHHHHHHHHHhc
Confidence 34678889988743 357899999999999999999999988643
No 23
>2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus}
Probab=99.79 E-value=2.9e-19 Score=145.15 Aligned_cols=112 Identities=23% Similarity=0.265 Sum_probs=92.6
Q ss_pred ccCCCCCCcEEEEEecCCCCCCCC-CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHc-CCeEeeCCc
Q 028257 41 GRSKNFRSRVVGIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF-GADVIMTSE 118 (211)
Q Consensus 41 ~~~~~~~m~i~aIIlA~G~ssRlg-~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~-~v~vi~~~~ 118 (211)
.|....+|++.+||||||.|+||+ +|++++++|+|||+|+++++... +++|+|+++++.. +.+ +++++.++.
T Consensus 6 ~~~~~~~~~~~~iILA~G~g~Rmg~~K~ll~i~g~pll~~~l~~l~~~--~~~i~vv~~~~~~----~~~~~~~~v~~~~ 79 (201)
T 2e8b_A 6 WRKGSLSKVNTCYVLAGGKSKRFGEDKLLYEIKGKKVIERVYETAKSV--FKEVYIVAKDREK----FSFLNAPVVLDEF 79 (201)
T ss_dssp SSTTTSCSCCEEEEEEESSCCCCSTTHHHHHHHHHHHHHHHHHHHHTT--CSEEEEEESCSGG----GGGGTCCEEECCC
T ss_pred cccCCcccCceEEEECCCCCccCCCCcccceECceEHHHHHHHHHHHh--CCEEEEEeCcHHH----hhcCCceEEecCC
Confidence 344444557889999999999998 79999999999999999999876 8999999976543 223 677766554
Q ss_pred ccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHH-HH
Q 028257 119 SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDG-VV 160 (211)
Q Consensus 119 ~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~-li 160 (211)
...|+..++..|++.+. .+++++++||+||++++.++. ++
T Consensus 80 ~~~g~~~~i~~al~~~~--~~~~lv~~~D~P~i~~~~i~~~l~ 120 (201)
T 2e8b_A 80 EESASIIGLYTALKHAK--EENVFVLSGDLPLMKKETVLYVLE 120 (201)
T ss_dssp SSCCHHHHHHHHHHHCS--SSEEEEEETTCTTCCHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHcC--CCCEEEEeCCcCcCCHHHHHHHHh
Confidence 45577789999999873 689999999999999999999 87
No 24
>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*
Probab=99.78 E-value=1.4e-18 Score=156.22 Aligned_cols=147 Identities=16% Similarity=0.180 Sum_probs=107.1
Q ss_pred CcEEEEEecCCCCCCCCC---ccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHHcCCeEeeCCcccCC
Q 028257 48 SRVVGIIPARFASSRFEG---KPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQFGADVIMTSESCRN 122 (211)
Q Consensus 48 m~i~aIIlA~G~ssRlg~---K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~~~v~vi~~~~~~~g 122 (211)
|++.+||||||.|+||++ |+|++++|+|||+|+++++.+++ +++|+|+++ .+++.+++...++.++..+ ...|
T Consensus 7 ~~~~aiIlA~G~g~Rl~~~~pK~l~~i~g~pli~~~l~~l~~~~-~~~i~vv~~~~~~~i~~~~~~~~~~~v~~~-~~~g 84 (459)
T 4fce_A 7 SSMSVVILAAGKGTRMYSDLPKVLHPLAGKPMVQHVIDAAMKLG-AQHVHLVYGHGGELLKKTLADPSLNWVLQA-EQLG 84 (459)
T ss_dssp CCEEEEEEECCCCGGGCCSSCGGGSEETTEEHHHHHHHHHHHHT-CSCEEEEESSCHHHHHHHC-----CEEECS-SCCC
T ss_pred CcceEEEECCCCCccCCCCCCcccCeeCCeeHHHHHHHHHHhCC-CCcEEEEeCCCHHHHHHHhccCCcEEEeCC-CCCC
Confidence 578999999999999974 99999999999999999999985 999999995 3666666666667766543 3456
Q ss_pred ChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeeeCCCCCCCCCCCeEEEeCCCccEEee
Q 028257 123 GTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYF 202 (211)
Q Consensus 123 ~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~~~~~~~~d~~~~~~v~~~~~~~~~~ 202 (211)
...+++.+++.+. +.+++++++||+||++++.++++++.+.+ .+.++... +... +. ..-++..+ +|++..|
T Consensus 85 ~~~~i~~~~~~~~-~~~~~lv~~~D~P~i~~~~i~~l~~~~~~-~~~~~~~~--~~~~--~~--~~g~v~~~-~g~v~~~ 155 (459)
T 4fce_A 85 TGHAMQQAAPHFA-DDEDILMLYGDVPLISVDTLQRLLAAKPE-GGIGLLTV--KLDN--PS--GYGRIVRE-NGDVVGI 155 (459)
T ss_dssp HHHHHHHHGGGSC-TTSEEEEEETTCTTCCHHHHHHHHHHCCT-TSEEEEEE--ECSC--CT--TSCEEEEE-TTEEEEE
T ss_pred cHHHHHHHHHhcC-CCCcEEEEeCCcccCCHHHHHHHHHHHhh-CCEEEEEE--ecCC--CC--cccEEEeC-CCcEEEE
Confidence 6788999999885 35899999999999999999999998865 34433322 2111 11 12233334 6777777
Q ss_pred ecC
Q 028257 203 SRG 205 (211)
Q Consensus 203 ~~~ 205 (211)
.++
T Consensus 156 ~ek 158 (459)
T 4fce_A 156 VEH 158 (459)
T ss_dssp ECG
T ss_pred EEC
Confidence 654
No 25
>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A*
Probab=99.77 E-value=6.8e-19 Score=156.23 Aligned_cols=144 Identities=16% Similarity=0.214 Sum_probs=104.1
Q ss_pred CCcEEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc-HHHHHHHHHcCCeEeeCCcccCC
Q 028257 47 RSRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD-EKIAECCQQFGADVIMTSESCRN 122 (211)
Q Consensus 47 ~m~i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~-e~i~~~~~~~~v~vi~~~~~~~g 122 (211)
||++.+||||||.|+||+ +|+|++++|+|||+|+++++.++..+++|+|++++ +.+.+++. +++++. ...+
T Consensus 1 Mmki~aIILAaG~ssRmg~~~pK~ll~l~GkPLi~~~l~~l~~~~~~~~IvVvt~~~~~i~~~~~--~v~~v~---~g~g 75 (371)
T 1w55_A 1 MSEMSLIMLAAGNSTRFNTKVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSSNITYMKKFTK--NYEFIE---GGDT 75 (371)
T ss_dssp -CCEEEEEECCSCCTTTCSSSCGGGCEEBTEEHHHHHHHHHHTTSCCSCEEEEESCHHHHHTTCS--SSEEEE---CCSS
T ss_pred CCccEEEEECCCCCccCCCCCCcceEEECCeEHHHHHHHHHHccCCCCeEEEEcCCHHHHHHHhC--CCEEEe---CCCC
Confidence 578999999999999997 69999999999999999999986679999999983 22222221 244442 1234
Q ss_pred ChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEe-eee-CCC-CCCCCCCCeEEEeCCCcc
Q 028257 123 GTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTA-VTS-LKP-EDAFDPNRVKCVVDNHGY 198 (211)
Q Consensus 123 ~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~-~~~-~~~-~~~~d~~~~~~v~~~~~~ 198 (211)
...++..|++.+. .+++++++||+||++++.++++++.+.++ +..+++. ..+ +.. ..+.+++.+..+++|+.|
T Consensus 76 ~~~sv~~aL~~l~--~d~vlv~~~D~Pli~~~~i~~li~~~~~~-~a~i~~~~~~d~vk~v~~t~~r~~l~~~~~P~~f 151 (371)
T 1w55_A 76 RAESLKKALELID--SEFVMVSDVARVLVSKNLFDRLIENLDKA-DCITPALKVADTTLFDNEALQREKIKLIQTPQIS 151 (371)
T ss_dssp HHHHHHHHHTTCC--SSEEEEEETTCTTCCHHHHHHHHTTGGGC-SEEEEEECCCSCEEETTEEECGGGCCEECSCEEE
T ss_pred hHHHHHHHHHhcC--CCeEEEEeCCcccCCHHHHHHHHHHHHhc-CCEEEEEEeecCeeeeeeecCccceeecCCccee
Confidence 5678999998873 68999999999999999999999988654 4444322 221 000 123455566667777754
No 26
>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii}
Probab=99.77 E-value=2.5e-19 Score=144.00 Aligned_cols=109 Identities=21% Similarity=0.270 Sum_probs=81.5
Q ss_pred EEEEecCCCCCCCC--CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHH-c----CCeEeeCCcccC
Q 028257 51 VGIIPARFASSRFE--GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQ-F----GADVIMTSESCR 121 (211)
Q Consensus 51 ~aIIlA~G~ssRlg--~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~-~----~v~vi~~~~~~~ 121 (211)
.+||||||.|+||+ +|++++++|+|||+|+++++.+++ +++|+|+++ .+++.+++.. + ++.++.. ...
T Consensus 2 ~aiIlA~G~s~R~~~~~K~l~~~~g~pli~~~l~~l~~~~-~~~v~vv~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~ 78 (196)
T 3rsb_A 2 DALIMAGGKGTRMGGVEKPLIKLCGRCLIDYVVSPLLKSK-VNNIFIATSPNTPKTKEYINSAYKDYKNIVVIDT--SGK 78 (196)
T ss_dssp EEEEEC----CGGGGSCGGGCEETTEEHHHHHHHHHHSSS-CCCEEEECCTTCHHHHHHHHHHTTTTTEEEE--------
T ss_pred EEEEECCCCCCcCCCCCccEEEECCEEHHHHHHHHHHHCC-CCEEEEEeCCChHHHHHHHHhhccCCCCEEEEEC--CCC
Confidence 58999999999998 499999999999999999999986 999999995 4666776655 3 2333322 233
Q ss_pred CChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh
Q 028257 122 NGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 165 (211)
Q Consensus 122 g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~ 165 (211)
|...++..|++.+ .+++++++||+||++++.++++++.+.+
T Consensus 79 g~~~si~~al~~~---~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 119 (196)
T 3rsb_A 79 GYIEDLNECIGYF---SEPFLVVSSDLINLKSKIINSIVDYFYC 119 (196)
T ss_dssp --CCCCCTTTTTC---SSCEEEEETTEESCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHhC---CCCEEEEeCCcccCCHHHHHHHHHHHHh
Confidence 4455677777766 5789999999999999999999999864
No 27
>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*
Probab=99.76 E-value=6.6e-18 Score=151.58 Aligned_cols=148 Identities=15% Similarity=0.224 Sum_probs=108.2
Q ss_pred CCcEEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHHcCCeEeeCCcccC
Q 028257 47 RSRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCR 121 (211)
Q Consensus 47 ~m~i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~~~v~vi~~~~~~~ 121 (211)
+|++.+||||||.|+||+ +|+|++++|+|||+|+++++.+++ +++++|++++ +++.+++.+++++++..+ ...
T Consensus 3 ~~~~~aiIlA~G~g~Rl~~~~pK~l~~i~gkpli~~~l~~l~~~~-~~~iivv~~~~~~~i~~~~~~~~~~~v~~~-~~~ 80 (456)
T 2v0h_A 3 KKALSAVILAAGKGTRMYSDLPKVLHTIAGKPMVKHVIDTAHQLG-SENIHLIYGHGGDLMRTHLANEQVNWVLQT-EQL 80 (456)
T ss_dssp -CCEEEEEECCCCCGGGCSSSCGGGSEETTEEHHHHHHHHHHHTT-CSCEEEEECTTHHHHHHHTTTCCCEEEECS-CCC
T ss_pred CCcceEEEECCCCCcccCCCCCccccEECCccHHHHHHHHHHhCC-CCcEEEEeCCCHHHHHHHhhcCCcEEEeCC-CCC
Confidence 467899999999999997 599999999999999999999884 9999999975 555555555466665543 344
Q ss_pred CChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeeeCCCCCCCCCCCeEEEeCCCccEEe
Q 028257 122 NGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 201 (211)
Q Consensus 122 g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~~~~~~~~d~~~~~~v~~~~~~~~~ 201 (211)
|...++..+++.+. +.+++++++||+||++++.++++++.+.+ .+.++.. .+... +. ..-++..+ +|++..
T Consensus 81 g~~~~~~~~~~~~~-~~~~vlv~~~D~P~i~~~~i~~l~~~~~~-~~~~~~~--~~~~~--~~--~~g~v~~~-~g~v~~ 151 (456)
T 2v0h_A 81 GTAHAVQQAAPFFK-DNENIVVLYGDAPLITKETLEKLIEAKPE-NGIALLT--VNLDN--PT--GYGRIIRE-NGNVVA 151 (456)
T ss_dssp CHHHHHHHHGGGCC-TTSEEEEEETTCTTCCHHHHHHHHHHCCT-TSEEEEE--EECSS--CT--TSCEEEEE-TTEEEE
T ss_pred CcHHHHHHHHHhcC-CCCeEEEEcCCcceeCHHHHHHHHHHHhc-CCEEEEE--eecCC--CC--ccceEEEc-CCcEEE
Confidence 66678888888874 26899999999999999999999998765 4444332 22211 11 12233344 666666
Q ss_pred eecC
Q 028257 202 FSRG 205 (211)
Q Consensus 202 ~~~~ 205 (211)
|.++
T Consensus 152 ~~ek 155 (456)
T 2v0h_A 152 IVEQ 155 (456)
T ss_dssp EECT
T ss_pred EEEC
Confidence 6654
No 28
>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ...
Probab=99.76 E-value=1e-17 Score=143.95 Aligned_cols=148 Identities=18% Similarity=0.215 Sum_probs=107.0
Q ss_pred CcEEEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEc-C--cHHHHHHHHH---cCCeEee
Q 028257 48 SRVVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVAT-D--DEKIAECCQQ---FGADVIM 115 (211)
Q Consensus 48 m~i~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt-~--~e~i~~~~~~---~~v~vi~ 115 (211)
|++.+||||||.|+||+ +|+|++++|+|||+|+++++..++ +++|+|++ + .+.+.+++.+ +++++.+
T Consensus 1 M~~~aIILAgG~gtRl~plT~~~pK~llpi~gkpli~~~l~~l~~~g-i~~I~vv~~~~~~~~i~~~l~~g~~~g~~i~~ 79 (293)
T 1fxo_A 1 MKRKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAG-IREILIISTPQDTPRFQQLLGDGSNWGLDLQY 79 (293)
T ss_dssp -CEEEEEECCCCCTTTTTHHHHSCGGGSEETTEETTHHHHHHHHHTT-CCEEEEEECTTTHHHHHHHHTTSGGGTCEEEE
T ss_pred CCceEEEECCCCCCcCccccCCCCceeCeECCEeHHHHHHHHHHHCC-CCEEEEEeccccHHHHHHHHhcccccCceEEE
Confidence 56789999999999997 799999999999999999999884 99998766 3 3556666654 6766532
Q ss_pred -CCcccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEEeeeeCCCCCCCCCCCe-EEE
Q 028257 116 -TSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKPEDAFDPNRV-KCV 192 (211)
Q Consensus 116 -~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v~~~~~~~~~~~d~~~~-~~v 192 (211)
..+...|...++..+++.+. .+.++++.||+||.+ ..+.++++.+.+ ..++++.. .++ .|++.+ .+.
T Consensus 80 ~~~~~~~G~~~al~~a~~~i~--~~~~~lv~gD~~~~~-~~l~~~l~~~~~~~~~~~v~~--~~v-----~dp~~~g~v~ 149 (293)
T 1fxo_A 80 AVQPSPDGLAQAFLIGESFIG--NDLSALVLGDNLYYG-HDFHELLGSASQRQTGASVFA--YHV-----LDPERYGVVE 149 (293)
T ss_dssp EECSSCCCGGGHHHHTHHHHT--TSEEEEEETTEEEEC-TTHHHHHHHHHTCCSSEEEEE--EEC-----SCGGGSEEEE
T ss_pred eeCCCCCCHHHHHHHHHHHhC--CCCEEEEECChhccC-ccHHHHHHHHHhcCCCcEEEE--EEC-----CCcccCcEEE
Confidence 22233455678888888874 467777779999988 588999988743 34444322 221 233333 455
Q ss_pred eCCCccEEeeecCC
Q 028257 193 VDNHGYAIYFSRGL 206 (211)
Q Consensus 193 ~~~~~~~~~~~~~~ 206 (211)
.|.+|++..|.+++
T Consensus 150 ~d~~g~v~~~~ekp 163 (293)
T 1fxo_A 150 FDQGGKAISLEEKP 163 (293)
T ss_dssp ECTTSCEEEEEESC
T ss_pred ECCCCcEEEEEECC
Confidence 68888999888765
No 29
>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8}
Probab=99.75 E-value=2.2e-18 Score=143.21 Aligned_cols=113 Identities=17% Similarity=0.222 Sum_probs=83.6
Q ss_pred CcEEEEEecCCCCCCCC--CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCCChH
Q 028257 48 SRVVGIIPARFASSRFE--GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTE 125 (211)
Q Consensus 48 m~i~aIIlA~G~ssRlg--~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g~~~ 125 (211)
|++.+||||||.|+||+ +|+|++++|+|||+|++++ . ..+++|+|++++ ++.+ +...++.++.. ..+...
T Consensus 24 M~~~aiILAgG~s~Rm~~~~K~l~~i~gkpli~~~l~~--~-~~~~~ivvv~~~-~~~~-~~~~~v~~~~~---~~~~~~ 95 (236)
T 2px7_A 24 MEVSVLIPAAGNGLRLGRGPKAFLQVGGRTLLEWTLAA--F-RDAAEVLVALPP-GAEP-PKGLGAVFLEG---GATRQA 95 (236)
T ss_dssp CCCEEEEECCC-------CCGGGCBCSSSBHHHHHHHH--T-TTCSEEEEEECT-TCCC-CTTCSCEEEEC---CSSHHH
T ss_pred CceEEEEEcCCCCccCCCCCCeEEEECCEEHHHHHHHh--c-CCCCeEEEEeCH-HHHH-hhcCCcEEEeC---CCchHH
Confidence 77889999999999998 8999999999999999999 3 468999999986 3333 22234443321 234567
Q ss_pred HHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEE
Q 028257 126 RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171 (211)
Q Consensus 126 si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv 171 (211)
++..|++.+. .+++++++||+||++++.++.+++.+.+. +..+
T Consensus 96 ~i~~al~~~~--~~~vlv~~~D~P~~~~~~i~~l~~~~~~~-~~~i 138 (236)
T 2px7_A 96 SVARLLEAAS--LPLVLVHDVARPFVSRGLVARVLEAAQRS-GAAV 138 (236)
T ss_dssp HHHHHHHHCC--SSEEEECCTTCCCCCHHHHHHHHHHHHHH-SEEE
T ss_pred HHHHHHHHcC--CCeEEEecCccccCCHHHHHHHHHHHHhc-CCeE
Confidence 8899999873 68999999999999999999999988653 4433
No 30
>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*
Probab=99.75 E-value=1.9e-17 Score=149.31 Aligned_cols=148 Identities=16% Similarity=0.150 Sum_probs=110.2
Q ss_pred cEEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHHcCCeEeeCCcccCCC
Q 028257 49 RVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCRNG 123 (211)
Q Consensus 49 ~i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~~~v~vi~~~~~~~g~ 123 (211)
.-.+||||||.|+||+ +|+|++++|+|||+|+++++.++ ++++|+|+++. +++.+++.+ ++.++..+ ...|.
T Consensus 11 ~~~~vIlAaG~g~R~~~~~pK~l~~i~gkpli~~~l~~l~~~-g~~~iivv~~~~~~~i~~~~~~-~i~~v~~~-~~~G~ 87 (468)
T 1hm9_A 11 SNFAIILAAGKGTRMKSDLPKVLHKVAGISMLEHVFRSVGAI-QPEKTVTVVGHKAELVEEVLAG-QTEFVTQS-EQLGT 87 (468)
T ss_dssp CEEEEEECCCCCGGGCCSSCGGGSEETTEEHHHHHHHHHHTT-CCSEEEEEECTTHHHHHHSSSS-SSEEEECS-SCCCH
T ss_pred CCcEEEEcCCCCccCCCCCCcEeeEECCccHHHHHHHHHHhc-CCCCEEEEECCCHHHHHHHhCC-CcEEEeCC-ccCCh
Confidence 4569999999999996 49999999999999999999988 59999999965 444433322 55655533 34566
Q ss_pred hHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhC-CCeEEEEeeeeCCCCCCCCCC-CeEEEeCCCccEEe
Q 028257 124 TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDAFDPN-RVKCVVDNHGYAIY 201 (211)
Q Consensus 124 ~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~-~d~vv~v~~~~~~~~~~~d~~-~~~~v~~~~~~~~~ 201 (211)
..+++.+++.+....+++++++||+||++++.++++++.+.+. .+.++. ..+.. ++. .-++..|++|++..
T Consensus 88 ~~sl~~a~~~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~i~--~~~~~-----~~~~~g~v~~d~~g~v~~ 160 (468)
T 1hm9_A 88 GHAVMMTEPILEGLSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATIL--TAETD-----NPFGYGRIVRNDNAEVLR 160 (468)
T ss_dssp HHHHHTTHHHHTTCCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEE--EEECS-----CCTTSCEEEECTTCCEEE
T ss_pred HHHHHHHHHHhccCCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEE--EeccC-----CCCceeEEEECCCCCEEE
Confidence 7888889988743368999999999999999999999988643 344433 23321 222 23456678888888
Q ss_pred eecCC
Q 028257 202 FSRGL 206 (211)
Q Consensus 202 ~~~~~ 206 (211)
|.+++
T Consensus 161 ~~ek~ 165 (468)
T 1hm9_A 161 IVEQK 165 (468)
T ss_dssp EECTT
T ss_pred EEECC
Confidence 88764
No 31
>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6
Probab=99.73 E-value=7e-17 Score=138.91 Aligned_cols=145 Identities=19% Similarity=0.172 Sum_probs=104.1
Q ss_pred EEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC---cHHHHHHHHH---cCCeEee-CC
Q 028257 51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD---DEKIAECCQQ---FGADVIM-TS 117 (211)
Q Consensus 51 ~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~---~e~i~~~~~~---~~v~vi~-~~ 117 (211)
.+||||||.|+||+ +|+|++++|+|||+|+++++..++ +++|+|++. .+.+.+++.+ +++++.+ ..
T Consensus 5 ~aIILAgG~GtRl~plT~~~pK~llpi~gkpli~~~l~~l~~~g-i~~Iivv~~~~~~~~i~~~l~~g~~~g~~i~~~~~ 83 (295)
T 1lvw_A 5 KGIVLAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLMLAG-IRDILIISTPRDLPLYRDLLGDGSQFGVRFSYRVQ 83 (295)
T ss_dssp EEEEECCCCCSTTTTTTTSSCGGGSEETTEETTHHHHHHHHHTT-CCEEEEEECTTTHHHHHHHHTTSGGGTSEEEEEEC
T ss_pred EEEEECCCCCCccccccCCCCceecEECCeeHHHHHHHHHHHCC-CCeEEEEeccchHHHHHHHhhhccccCceEEEeeC
Confidence 58999999999997 699999999999999999999884 999998763 3556666643 5666522 22
Q ss_pred cccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEEeeeeCCCCCCCCCC-CeEEEeCC
Q 028257 118 ESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKPEDAFDPN-RVKCVVDN 195 (211)
Q Consensus 118 ~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v~~~~~~~~~~~d~~-~~~~v~~~ 195 (211)
+...|...++..+++.+. .+.++++.+|+||.+ ..+.++++.+.+ ..++++. ..++ .|++ ...+..|.
T Consensus 84 ~~~~G~~~al~~a~~~i~--~~~~~lv~gD~~~~~-~~l~~~l~~~~~~~~~~~v~--~~~v-----~dp~~~g~v~~d~ 153 (295)
T 1lvw_A 84 EEPRGIADAFIVGKDFIG--DSKVALVLGDNVFYG-HRFSEILRRAASLEDGAVIF--GYYV-----RDPRPFGVVEFDS 153 (295)
T ss_dssp SSCCCGGGHHHHTHHHHT--TSCEEEEETTCCEEC-TTHHHHHHHHHTCCSSEEEE--EEEC-----SCCTTSEEEEECT
T ss_pred CCCCChHHHHHHHHHHhC--CCcEEEEECCccccC-cCHHHHHHHHHHcCCCcEEE--EEEC-----CCcccCCEEEECC
Confidence 233456678888888874 345555569999998 588999988743 3344432 2221 2333 34556688
Q ss_pred CccEEeeecCC
Q 028257 196 HGYAIYFSRGL 206 (211)
Q Consensus 196 ~~~~~~~~~~~ 206 (211)
+|++..|.+++
T Consensus 154 ~g~v~~~~ekp 164 (295)
T 1lvw_A 154 EGRVISIEEKP 164 (295)
T ss_dssp TSBEEEEEESC
T ss_pred CCcEEEEEECC
Confidence 89999998765
No 32
>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A*
Probab=99.73 E-value=1.3e-17 Score=141.33 Aligned_cols=152 Identities=13% Similarity=0.068 Sum_probs=107.7
Q ss_pred CcEEEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHH-----------
Q 028257 48 SRVVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQ----------- 108 (211)
Q Consensus 48 m~i~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~----------- 108 (211)
|...+||||||.|+||+ +|+|++++|+|||+|+++.+.++ ++++|+|+++ .+.+.+++..
T Consensus 1 M~~~avIlAaG~gtRl~plt~~~pK~ll~i~gkpli~~~l~~l~~~-gi~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~~ 79 (281)
T 3juk_A 1 MIKKCLFPAAGYGTRFLPITKTIPKEMLPIVDKPLIQYAVEEAMEA-GCEVMAIVTGRNKRSLEDYFDTSYEIEHQIQGT 79 (281)
T ss_dssp CCCEEEEECCSCCGGGTTGGGTSCGGGCBSSSSBHHHHHHHHHHHH-TCCEEEEEECTTHHHHHHHTSCCC--------C
T ss_pred CceEEEEECCcCCcccCccccCCCcccceECCEEHHHHHHHHHHhC-CCCEEEEEecCCHHHHHHHHhcchhhhhhhhcc
Confidence 45679999999999996 39999999999999999999998 5999999995 4556655432
Q ss_pred -------------cCCeEe-eCCcccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHH----HHHHHHHHHHhCCCeE
Q 028257 109 -------------FGADVI-MTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPE----IIDGVVKALQAAPDAV 170 (211)
Q Consensus 109 -------------~~v~vi-~~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~----~i~~li~~~~~~~d~v 170 (211)
++..+. ...+...|...++..|++.+. .+.++++.||+ +++.+ .++++++.+.+....+
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~a~~~l~--~~~~lv~~~D~-~~~~~~~~~~l~~l~~~~~~~~~~~ 156 (281)
T 3juk_A 80 NKENALKSIRNIIEKCCFSYVRQKQMKGLGHAILTGEALIG--NEPFAVILADD-LCISHDHPSVLKQMTSLYQKYQCSI 156 (281)
T ss_dssp CHHHHHHHHHHHHHHCEEEEEECSSCCCHHHHHHHTHHHHC--SSCEEEECTTE-EEECTTSCCHHHHHHHHHHHHCSCE
T ss_pred cchhhhhhhhccccCccEEEEecCCCCCcHHHHHHHHHHcC--CCCEEEEeCCe-eccCccchHHHHHHHHHHHHcCCCE
Confidence 234542 222234466678999998884 57899999999 88887 8999999886433345
Q ss_pred EEEeeeeCCCCCCCCCCCeEEEeCC--Cc--cEEeeecCCC
Q 028257 171 FSTAVTSLKPEDAFDPNRVKCVVDN--HG--YAIYFSRGLI 207 (211)
Q Consensus 171 v~v~~~~~~~~~~~d~~~~~~v~~~--~~--~~~~~~~~~~ 207 (211)
+++...+ .+... ..-.+..++ +| ++..|.+++.
T Consensus 157 v~~~~~~--~~~~~--~~g~v~~~~~~~g~~~v~~~~Ekp~ 193 (281)
T 3juk_A 157 VAIEEVA--LEEVS--KYGVIRGEWLEEGVYEIKDMVEKPN 193 (281)
T ss_dssp EEEEECC--TTTGG--GSEEEEEEEEETTEEEEEEEEESCC
T ss_pred EEEEEec--hhhcc--cCCEEEeccCCCCceEEeEEEECcC
Confidence 5544322 11111 122334454 66 7888887764
No 33
>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A*
Probab=99.72 E-value=3e-17 Score=135.33 Aligned_cols=117 Identities=18% Similarity=0.196 Sum_probs=80.2
Q ss_pred hcccCCCCCCcEEEEEecCCCCCCCC--CccccccCCeehHHHHHHHHHcCCCCCeEEEEc-CcHHHHHH-HHHcC--Ce
Q 028257 39 YLGRSKNFRSRVVGIIPARFASSRFE--GKPLVNILGKPMIQRTWERSKLATTLDHLVVAT-DDEKIAEC-CQQFG--AD 112 (211)
Q Consensus 39 ~~~~~~~~~m~i~aIIlA~G~ssRlg--~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt-~~e~i~~~-~~~~~--v~ 112 (211)
|....++.|+++.+||||||.|+||+ +|++++++|+|||+|+++++.++ +++|+|++ +.+++.+. .++++ +.
T Consensus 8 ~~~~~~~~m~~~~~iIlA~G~g~R~~~~~K~l~~i~g~pli~~~l~~l~~~--~~~i~vv~~~~~~~~~~~~~~~~~~~~ 85 (232)
T 2xme_A 8 YLKIFAGRIKLMKAVILAAGLGTRLGGVPKPLVRVGGCEIILRTMKLLSPH--VSEFIIVASRYADDIDAFLKDKGFNYK 85 (232)
T ss_dssp --------CCCEEEEEEECC------CCCGGGCEETTEEHHHHHHHHHGGG--EEEEEEEESTTHHHHHHHHTTSCCCEE
T ss_pred hhhhhhcccccceEEEECCcCcCcCCCCCcEEeEECCEEHHHHHHHHHHHh--CCEEEEEeCChHHHHHHHHHhcCCcEE
Confidence 33444555778999999999999995 69999999999999999999886 88998888 33455444 34444 34
Q ss_pred EeeCCcccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHH
Q 028257 113 VIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVK 161 (211)
Q Consensus 113 vi~~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~ 161 (211)
++.++....|...++..|++.+. +.++++.||+|+ +++.++.+++
T Consensus 86 ~v~~~~~~~g~~~~i~~a~~~~~---~~~lv~~~D~p~-~~~~~~~l~~ 130 (232)
T 2xme_A 86 IVRHDRPEKGNGYSLLVAKNHVE---DRFILTMGDHVY-SQQFIEKAVR 130 (232)
T ss_dssp EEECSCGGGCHHHHHHTTGGGCC---SSEEEEETTEEE-CHHHHHHHTT
T ss_pred EEECCCCCCCcHHHHHHHHHHCC---CCEEEEcCCccc-CHHHHHHHHh
Confidence 44444334566788888888873 568899999997 9988888775
No 34
>2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori}
Probab=99.71 E-value=2.4e-16 Score=135.94 Aligned_cols=152 Identities=13% Similarity=0.131 Sum_probs=100.6
Q ss_pred CcEEEEEecCCCCCCCC-------Ccccccc-CCeehHHHHHHHHHcCCCCCeEEEEcCcH---HHHHHHHH-cCC-eE-
Q 028257 48 SRVVGIIPARFASSRFE-------GKPLVNI-LGKPMIQRTWERSKLATTLDHLVVATDDE---KIAECCQQ-FGA-DV- 113 (211)
Q Consensus 48 m~i~aIIlA~G~ssRlg-------~K~ll~l-~GkpLl~~~i~~l~~~~~id~IVVvt~~e---~i~~~~~~-~~v-~v- 113 (211)
|++.+||||||.|+||. +|+|+++ +|+|||+|+++++.++ +++|+|+++.+ .+.+.+.. +++ ++
T Consensus 3 ~~~~avIlAgG~gtRl~plt~~~~pK~ll~i~gg~pli~~~l~~l~~~--~~~i~vv~~~~~~~~i~~~~~~~~~~~~~~ 80 (308)
T 2qh5_A 3 LKIKNILLSGGSGKRLWPLSRSLYPKQFLKLFDHKSLFELSFKRNASL--VDETLIVCNEKHYFLALEEIKNEIKNKSVG 80 (308)
T ss_dssp CCEEEEEECC-------------CCGGGCTTBTTBCHHHHHHHHHHTT--CSEEEEEEEGGGHHHHHHHTTTTCSSCEEE
T ss_pred CccEEEEEcCCCCccCCccCCCCCCCEEEECCCCCCHHHHHHHHHHcc--CCCEEEEEChhHHHHHHHHHHHhhCCCccE
Confidence 56789999999999992 6999999 6999999999999986 89999998753 55566655 555 43
Q ss_pred eeCCcccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHH---HHhCCCeEEEEeeeeCCCCCCCCCCCeE
Q 028257 114 IMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA---LQAAPDAVFSTAVTSLKPEDAFDPNRVK 190 (211)
Q Consensus 114 i~~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~---~~~~~d~vv~v~~~~~~~~~~~d~~~~~ 190 (211)
+..++...|...++..++..+. ..+++++++||+|+++.+.++++++. +.+. +..+++..++..+. ...-.
T Consensus 81 ~i~~~~~~gt~~al~~a~~~l~-~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~-~~~~t~~~~~~~~~----~~~g~ 154 (308)
T 2qh5_A 81 FLLESLSKNTANAIALSALMSD-KEDLLIVTPSDHLIKDLQAYENAIKKAIDLAQK-GFLVTFGVSIDKPN----TEFGY 154 (308)
T ss_dssp EEEESSCCCHHHHHHHHHHTSC-TTSEEEEEESSCBCCCHHHHHHHHHHHHHHHHT-TCEEEEEEECSSCC----TTSEE
T ss_pred EEeCCCCCChHHHHHHHHHHhC-CCCeEEEEcCCccccCHHHHHHHHHHHHHHHhc-CCEEEEEEecCCCC----CCceE
Confidence 2223333465677888888773 24579999999999899889999986 4332 33444443332221 11223
Q ss_pred EEeCCCccEEeeecCCC
Q 028257 191 CVVDNHGYAIYFSRGLI 207 (211)
Q Consensus 191 ~v~~~~~~~~~~~~~~~ 207 (211)
+..+.++++..|.+++.
T Consensus 155 i~~d~~~~V~~~~Ekp~ 171 (308)
T 2qh5_A 155 IESPNGLDVKRFIEKPS 171 (308)
T ss_dssp EECSSSSBCSEEEESCC
T ss_pred EEECCCCEEEEEEECCC
Confidence 33366788889988754
No 35
>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A*
Probab=99.71 E-value=6.5e-17 Score=136.65 Aligned_cols=146 Identities=19% Similarity=0.191 Sum_probs=104.0
Q ss_pred cEEEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc---HHHHHHHH---HcCCeEeeC
Q 028257 49 RVVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD---EKIAECCQ---QFGADVIMT 116 (211)
Q Consensus 49 ~i~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~---e~i~~~~~---~~~v~vi~~ 116 (211)
.+.+||||||.|+||+ +|+|++++|+|||+|+++++.++ ++++|+|+++. +++.+++. .+++++.+.
T Consensus 24 ~m~aiIlAaG~g~Rl~~lt~~~pK~ll~i~g~pli~~~l~~l~~~-g~~~iivv~~~~~~~~~~~~~~~~~~~~~~i~~~ 102 (269)
T 4ecm_A 24 AMKGIILAGGTGSRLYPITKVTNKHLLPVGRYPMIYHAVYKLKQC-DITDIMIITGKEHMGDVVSFLGSGQEFGVSFTYR 102 (269)
T ss_dssp CEEEEEECCSCCGGGTTTTSSSCGGGSEETTEEHHHHHHHHHHHT-TCCEEEEEECTTTHHHHHHHHTTSGGGTCEEEEE
T ss_pred CcEEEEECCCCccccccccCCCCceecEECCEEHHHHHHHHHHHC-CCCEEEEECChhhHHHHHHHHhhccccCceEEEe
Confidence 3689999999999996 39999999999999999999998 49999999973 45555543 245565332
Q ss_pred -CcccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEEeeeeCCCCCCCCCCCeEEEeC
Q 028257 117 -SESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKPEDAFDPNRVKCVVD 194 (211)
Q Consensus 117 -~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v~~~~~~~~~~~d~~~~~~v~~ 194 (211)
.....|...++..+++.+. .+.+++++||+|+. ..++++++.+.+ ..+.++.+. +.. ++.....+..
T Consensus 103 ~~~~~~G~~~al~~a~~~~~--~~~~lv~~~D~~~~--~~l~~l~~~~~~~~~~~~~~~~--~~~-----~~~~~g~v~~ 171 (269)
T 4ecm_A 103 VQDKAGGIAQALGLCEDFVG--NDRMVVILGDNIFS--DDIRPYVEEFTNQKEGAKVLLQ--SVD-----DPERFGVANI 171 (269)
T ss_dssp ECSSCCCHHHHHHTTHHHHT--TSEEEEEETTEEES--SCSHHHHHHHHTSSSSEEEEEE--ECS-----CGGGSEEEEE
T ss_pred eCCccCcHHHHHHHHHHhcC--CCcEEEEeCCccCc--cCHHHHHHHHHhcCCCeEEEEE--ECC-----CCCCceEEEE
Confidence 2233455578888888874 68999999999875 678999988864 345444433 322 2222333333
Q ss_pred CCccEEeeecCC
Q 028257 195 NHGYAIYFSRGL 206 (211)
Q Consensus 195 ~~~~~~~~~~~~ 206 (211)
.+|.+..|.+++
T Consensus 172 d~g~v~~~~ekp 183 (269)
T 4ecm_A 172 QNRKIIEIEEKP 183 (269)
T ss_dssp ETTEEEEEEESC
T ss_pred cCCEEEEEEECC
Confidence 357888887664
No 36
>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*
Probab=99.70 E-value=3.7e-16 Score=142.91 Aligned_cols=150 Identities=17% Similarity=0.207 Sum_probs=113.7
Q ss_pred cEEEEEecCCCCCCCC---CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHH----HcCCe--EeeCC
Q 028257 49 RVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQ----QFGAD--VIMTS 117 (211)
Q Consensus 49 ~i~aIIlA~G~ssRlg---~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~----~~~v~--vi~~~ 117 (211)
.+.+||||||+||||. +|+|+|++|||||+|+|+.+.++ ++++|+|+++ .+.+++++. .++.+ ++..+
T Consensus 12 ~~~vvILAaG~GtRm~~~~pK~l~pv~gkp~i~~~l~~~~~~-g~~~i~vv~~~~~~~i~~~~~~~~~~~~~~i~~~~q~ 90 (501)
T 3st8_A 12 DTAVLVLAAGPGTRMRSDTPKVLHTLAGRSMLSHVLHAIAKL-APQRLIVVLGHDHQRIAPLVGELADTLGRTIDVALQD 90 (501)
T ss_dssp CEEEEEEECSCCGGGCCSSCGGGCEETTEEHHHHHHHHHHHH-CCSEEEEEECTTHHHHHHHHHHHHHHHTSCCEEEECS
T ss_pred CceEEEECCcCcccCCCCCCHHHeEECChhHHHHHHHHHHhC-CCCEEEEEeCCCHHHHHHHHHHHHHhcCCcEEEEEcC
Confidence 4788999999999995 59999999999999999999998 6999999986 456666553 34544 44443
Q ss_pred cccCCChHHHHHHHHhhcc-CCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeeeCCCCCCCCCC-CeEEEeCC
Q 028257 118 ESCRNGTERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPN-RVKCVVDN 195 (211)
Q Consensus 118 ~~~~g~~~si~~al~~l~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~~~~~~~~d~~-~~~~v~~~ 195 (211)
...|+..++..+++.+.. ..+.++++.+|.|+++.+.+..+++.+++.. ..+++..+++ -|+. +-+++.+.
T Consensus 91 -~~lGTa~Av~~a~~~l~~~~~~~~lvl~gd~~l~~~~~~~~l~~~h~~~~-~~~ti~~~~~-----~dp~~yG~i~~~~ 163 (501)
T 3st8_A 91 -RPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLADLIATHRAVS-AAVTVLTTTL-----DDPFGYGRILRTQ 163 (501)
T ss_dssp -SCCCHHHHHHHHHTTSCTTCCSEEEEEETTCTTCCHHHHHHHHHHHHHTT-CSEEEEEEEC-----SCCTTSCEEEECT
T ss_pred -CCCCcHHHHHHHHHHhccccccceeeecCcceeecHHHHHHHHHHHhhcc-ccceEeeecc-----CCchhcccccccc
Confidence 234556788889988853 2468999999999999999999999886532 2233333442 2443 56788899
Q ss_pred CccEEeeecCC
Q 028257 196 HGYAIYFSRGL 206 (211)
Q Consensus 196 ~~~~~~~~~~~ 206 (211)
+|.+..|.++.
T Consensus 164 ~g~v~~ivEk~ 174 (501)
T 3st8_A 164 DHEVMAIVEQT 174 (501)
T ss_dssp TCCEEEEECGG
T ss_pred ceeEEeecccc
Confidence 99999988774
No 37
>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli}
Probab=99.70 E-value=1.6e-16 Score=136.16 Aligned_cols=120 Identities=14% Similarity=0.143 Sum_probs=91.4
Q ss_pred EEEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHH-------------
Q 028257 50 VVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ------------- 108 (211)
Q Consensus 50 i~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~------------- 108 (211)
+.+||||||.|+||+ +|+|++++|+|||+|+++++.++ ++++|+|++++ +.+.+++..
T Consensus 9 ~~avIlAaG~gtRl~plt~~~pK~ll~i~gkpli~~~l~~l~~~-gi~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~~~~ 87 (302)
T 2e3d_A 9 KKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAA-GITEIVLVTHSSKNSIENHFDTSFELEAMLEKRVK 87 (302)
T ss_dssp CEEEEECCSCCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHT-TCCEEEEEECGGGHHHHHHHSCCHHHHHHHC----
T ss_pred cEEEEECCcCcccCCccccCCCceeeEECCeEHHHHHHHHHHHC-CCCEEEEEeCCCHHHHHHHHhcchhhhhhhhhccc
Confidence 579999999999996 79999999999999999999988 59999999975 566655432
Q ss_pred ------------cCCeE-eeCCcccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCC----HH---HHHHHHHHHHhCCC
Q 028257 109 ------------FGADV-IMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIE----PE---IIDGVVKALQAAPD 168 (211)
Q Consensus 109 ------------~~v~v-i~~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~----~~---~i~~li~~~~~~~d 168 (211)
.++++ +..+....|...++..+++.+. .+.+++++||+|+ + ++ .++.+++.+.+...
T Consensus 88 ~~~l~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~a~~~~~--~~~~lv~~~D~~~-~~~~~~~~~~~l~~l~~~~~~~~~ 164 (302)
T 2e3d_A 88 RQLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVG--DEPVAVILPDVIL-DEYESDLSQDNLAEMIRRFDETGH 164 (302)
T ss_dssp CHHHHHHHHTSCTTCEEEEEECSSCCCHHHHHHHTHHHHC--SSCEEEECTTEEE-CTTSSCTTTSTHHHHHHHHHHHCC
T ss_pred hhhhhhhhhccccCcceEEeeCCccCCHHHHHHHHHHHcC--CCcEEEEcCCccc-cCccccchHHHHHHHHHHHHhcCC
Confidence 24444 2233334566678888888873 4789999999997 5 45 79999998864333
Q ss_pred eEEEE
Q 028257 169 AVFST 173 (211)
Q Consensus 169 ~vv~v 173 (211)
.++++
T Consensus 165 ~~i~~ 169 (302)
T 2e3d_A 165 SQIMV 169 (302)
T ss_dssp EEEEE
T ss_pred cEEEE
Confidence 44443
No 38
>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6
Probab=99.70 E-value=7.6e-17 Score=138.77 Aligned_cols=145 Identities=20% Similarity=0.191 Sum_probs=102.8
Q ss_pred EEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC---cHHHHHHHHH---cCCeEee-CC
Q 028257 51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD---DEKIAECCQQ---FGADVIM-TS 117 (211)
Q Consensus 51 ~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~---~e~i~~~~~~---~~v~vi~-~~ 117 (211)
.+||||||.|+||+ +|+|++++|+|||+|+++++..+ ++++|+|+++ .+.+.+++.+ +++++.+ ..
T Consensus 5 ~aIILAgG~GtRl~plT~~~pK~llpi~gkpli~~~l~~l~~~-gi~~I~vv~~~~~~~~i~~~l~~g~~~g~~i~~~~~ 83 (296)
T 1mc3_A 5 KGIILAGGSGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLA-GIREILIITTPEDKGYFQRLLGDGSEFGIQLEYAEQ 83 (296)
T ss_dssp EEEEECCCCCGGGHHHHTTSCGGGSEETTEETTHHHHHHHHHT-TCCEEEEEECTTTHHHHHHHHTTSGGGTCEEEEEEC
T ss_pred EEEEECCCCCCcCCcccCCCCceeeEECCeeHHHHHHHHHHhC-CCCcEEEEechhHHHHHHHHHhcccccCceEEEecc
Confidence 58999999999997 79999999999999999999987 4999988764 3556666643 5666522 22
Q ss_pred cccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEEeeeeCCCCCCCCCCCe-EEEeCC
Q 028257 118 ESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKPEDAFDPNRV-KCVVDN 195 (211)
Q Consensus 118 ~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v~~~~~~~~~~~d~~~~-~~v~~~ 195 (211)
+...|...++..|++.+. .+.++++.||+||.+ ..+..+++.+.+ ..++++.. .++ .|++.+ .+..|.
T Consensus 84 ~~~~G~~~al~~a~~~i~--~~~~~lv~gD~~~~~-~~l~~~l~~~~~~~~~~~v~~--~~v-----~dp~~yg~v~~d~ 153 (296)
T 1mc3_A 84 PSPDGLAQAFIIGETFLN--GEPSCLVLGDNIFFG-QGFSPKLRHVAARTEGATVFG--YQV-----MDPERFGVVEFDD 153 (296)
T ss_dssp SSCCCSTHHHHHTHHHHT--TSCEEEEETTEEEEC-SSCHHHHHHHTTCCSSEEEEE--EEC-----SCCSSSBBCEEET
T ss_pred CCCCCHHHHHHHHHHHhC--CCCEEEEECCccccc-cCHHHHHHHHHHcCCCCEEEE--EEC-----CCcccCCEEEECC
Confidence 233466678888888874 345555669999988 578888888743 34444422 221 133332 344578
Q ss_pred CccEEeeecCC
Q 028257 196 HGYAIYFSRGL 206 (211)
Q Consensus 196 ~~~~~~~~~~~ 206 (211)
+|++..|.+++
T Consensus 154 ~g~v~~~~ekp 164 (296)
T 1mc3_A 154 NFRAISLEEKP 164 (296)
T ss_dssp TEEEEECCBSC
T ss_pred CCcEEEEEECC
Confidence 88888887765
No 39
>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19
Probab=99.69 E-value=4.7e-17 Score=134.67 Aligned_cols=113 Identities=23% Similarity=0.264 Sum_probs=88.4
Q ss_pred CcEEEEEecCCC---CCCCC--CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCC
Q 028257 48 SRVVGIIPARFA---SSRFE--GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRN 122 (211)
Q Consensus 48 m~i~aIIlA~G~---ssRlg--~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g 122 (211)
|++.+||||||. |+||+ +|+|++++|+|||+|+++++.+++ + +|+|+++.+++.+++ ++.+ ....|
T Consensus 1 m~~~~vIlAaG~tRl~~r~~~~~K~l~~i~g~pll~~~l~~l~~~~-~-~ivvv~~~~~i~~~~---~~~~----~~~~g 71 (232)
T 2dpw_A 1 MRPSAIVLAGGKEAWAERFGVGSKALVPYRGRPMVEWVLEALYAAG-L-SPVYVGENPGLVPAP---ALTL----PDRGG 71 (232)
T ss_dssp CCCEEEEECCCBCSGGGTTTCSBGGGSEETTEETHHHHHHHHHHTT-C-EEEEESCCSSCSSCC---SEEE----CCCSS
T ss_pred CceeEEEECCCCCccccccCCCCceeeEECCEEHHHHHHHHHHhcC-C-EEEEEeChHHHhhhc---CeEe----cCCCC
Confidence 567899999999 99997 599999999999999999999874 5 888887654333222 4433 23456
Q ss_pred ChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEE
Q 028257 123 GTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFST 173 (211)
Q Consensus 123 ~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v 173 (211)
...++..|++.+. +++++++||+||++++.++.+++ +.+..+.+++.
T Consensus 72 ~~~~i~~a~~~~~---~~~lv~~~D~P~~~~~~i~~l~~-~~~~~~~~~~~ 118 (232)
T 2dpw_A 72 LLENLEQALEHVE---GRVLVATGDIPHLTEEAVRFVLD-KAPEAALVYPI 118 (232)
T ss_dssp HHHHHHHHHHTCC---SEEEEEETTCTTCCHHHHHHHHH-HCCSCSEEEEE
T ss_pred HHHHHHHHHHHcC---CCEEEEeCCcccCCHHHHHHHHh-cCCCCCEEEEE
Confidence 6788999998873 79999999999999999999998 54334544443
No 40
>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A*
Probab=99.68 E-value=4e-17 Score=137.19 Aligned_cols=139 Identities=19% Similarity=0.182 Sum_probs=102.6
Q ss_pred CcEEEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHHcCCeEeeCCcc
Q 028257 48 SRVVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQFGADVIMTSES 119 (211)
Q Consensus 48 m~i~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~~~v~vi~~~~~ 119 (211)
|++.+||||||.|+||+ +|+|++++|+|||+|+++++.++ ++++|+|+++ .+.+..+.+.+++.++..++.
T Consensus 24 ~~~~aiIlAaG~gtRl~plt~~~pK~l~~i~gkpli~~~l~~l~~~-g~~~i~vv~~~~~~~i~~~~~~~~~~iv~~~~~ 102 (254)
T 1jyk_A 24 IRVKAIILAAGLGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEK-GINDIIIIVGYLKEQFDYLKEKYGVRLVFNDKY 102 (254)
T ss_dssp CCCEEEEEECSCCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHT-TCCCEEEEECTTGGGGTHHHHHHCCEEEECTTT
T ss_pred cCceEEEECCCCcccCCcccCCCCCEEeeECCEEHHHHHHHHHHHC-CCCeEEEEeCCcHHHHHHHHHhCCcEEEECCCc
Confidence 56889999999999997 69999999999999999999988 4899999986 456666666678887776543
Q ss_pred -cCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeeeCCCCCCCCC-CCeEEEeCCCc
Q 028257 120 -CRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDP-NRVKCVVDNHG 197 (211)
Q Consensus 120 -~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~~~~~~~~d~-~~~~~v~~~~~ 197 (211)
..|...++..+++.+. + +++++||+|+.. +.++.++ + .+.++++... ++ ..+.++.|.+|
T Consensus 103 ~~~g~~~al~~a~~~~~---~-~lv~~~D~~~~~-~~~~~~~----~-~~~~~t~~~~--------~~~~~~~v~~d~~g 164 (254)
T 1jyk_A 103 ADYNNFYSLYLVKEELA---N-SYVIDADNYLFK-NMFRNDL----T-RSTYFSVYRE--------DCTNEWFLVYGDDY 164 (254)
T ss_dssp TTSCTHHHHHTTGGGCT---T-EEEEETTEEESS-CCCCSCC----C-SEEEEECEES--------SCSSCCEEEECTTC
T ss_pred cCCCcHHHHHHHHHHCC---C-EEEEeCCcccCH-HHHHHHH----h-CCceEEEEcc--------cCCCCeEEEECCCC
Confidence 3355677777777662 3 789999999988 5554433 1 2334443321 11 13456688899
Q ss_pred cEEeeecC
Q 028257 198 YAIYFSRG 205 (211)
Q Consensus 198 ~~~~~~~~ 205 (211)
++..|+++
T Consensus 165 ~v~~~~e~ 172 (254)
T 1jyk_A 165 KVQDIIVD 172 (254)
T ss_dssp BEEEEECC
T ss_pred eEEEEEEC
Confidence 99999875
No 41
>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea}
Probab=99.67 E-value=1e-16 Score=137.16 Aligned_cols=123 Identities=11% Similarity=0.159 Sum_probs=92.6
Q ss_pred CcEEEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHH-----------
Q 028257 48 SRVVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQ----------- 108 (211)
Q Consensus 48 m~i~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~----------- 108 (211)
+.+.+||||||.|+||+ +|+|++++|+|||+|+++++.++ ++++|+|+++ .+.+.+++..
T Consensus 13 ~~~~avIlAaG~gtRl~plt~~~pK~ll~i~gkpli~~~l~~l~~~-g~~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~~ 91 (297)
T 2ux8_A 13 PLRKAVFPVAGLGTRFLPATKAMPKEMLPVVDRPLIQYAVDEAVEA-GIEQMIFVTGRGKSALEDHFDIAYELEATMAAR 91 (297)
T ss_dssp CCCEEEEEECCCCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHT-TCCEEEEEECTTCHHHHHHTSCCHHHHHHHHTT
T ss_pred CccEEEEECCCCccccCccccCCCceeeeECCeEHHHHHHHHHHhC-CCCEEEEEeCCCHHHHHHHHhhhhhhhhhhhhc
Confidence 44679999999999995 69999999999999999999988 5999999997 4666665432
Q ss_pred ------------cCCeE-eeCCcccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCC--HHHHHHHHHHHHhCCCeEEEE
Q 028257 109 ------------FGADV-IMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIE--PEIIDGVVKALQAAPDAVFST 173 (211)
Q Consensus 109 ------------~~v~v-i~~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~--~~~i~~li~~~~~~~d~vv~v 173 (211)
.+..+ +..++...|...++..|++.+. .+.+++++||+|+ + +..++.+++.+.+....++++
T Consensus 92 ~~~~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~~~--~~~~lv~~~D~~~-~~~~~~l~~l~~~~~~~~~~~i~~ 168 (297)
T 2ux8_A 92 GKSLDVLDGTRLKPGNIAYVRQQEPMGLGHAVWCARDIVG--DEPFAVLLPDDFM-FGQPGCLKQMVDAYNKVGGNLICA 168 (297)
T ss_dssp TCCGGGGTTSCCSTTSEEEEECCSCCCHHHHHHTTHHHHC--SSCEEEECTTEEE-ESSSCHHHHHHHHHHHHCSEEEEE
T ss_pred cchhhhhhhcccCCCceEEEeCCCCCChHHHHHHHHHHcC--CCcEEEEeCCeec-CCChHHHHHHHHHHHhcCCCEEEE
Confidence 23344 2222334566678888888773 5789999999994 5 579999999886433344444
Q ss_pred e
Q 028257 174 A 174 (211)
Q Consensus 174 ~ 174 (211)
.
T Consensus 169 ~ 169 (297)
T 2ux8_A 169 E 169 (297)
T ss_dssp C
T ss_pred E
Confidence 3
No 42
>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.67 E-value=1.8e-16 Score=137.57 Aligned_cols=123 Identities=14% Similarity=0.121 Sum_probs=90.8
Q ss_pred EEEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHH-------------
Q 028257 50 VVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ------------- 108 (211)
Q Consensus 50 i~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~------------- 108 (211)
+.+||||||.|+||+ +|+|++++|+|||+|+++++.++ ++++|+|+++. +.+.+++..
T Consensus 13 ~~aVIlAaG~gtRl~plt~~~pK~ll~i~gkpli~~~l~~l~~~-gi~~iivv~~~~~~~i~~~~~~~~~~~~~l~~~~~ 91 (323)
T 2pa4_A 13 KTVVVPAAGLGTRFLPATKTVPKELLPVVDTPGIELIAAEAAEL-GATRLAIITAPNKAGVLAHFERSSELEETLMERGK 91 (323)
T ss_dssp CEEEEECCCCCGGGTTGGGTSCGGGCEETTEEHHHHHHHHHHHT-TCCEEEEEECTTCHHHHHTTSCCHHHHHHHHHTTC
T ss_pred eEEEEECCCCccccCccccCCCceeeeECCEEHHHHHHHHHHhC-CCCEEEEEecCcHHHHHHHHhccchhhhhhhccch
Confidence 469999999999994 69999999999999999999987 59999999875 555544321
Q ss_pred -----------cCCeE-eeCCcccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCC-HHHHHHHHHHHHhCCCeEEEEe
Q 028257 109 -----------FGADV-IMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIE-PEIIDGVVKALQAAPDAVFSTA 174 (211)
Q Consensus 109 -----------~~v~v-i~~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~-~~~i~~li~~~~~~~d~vv~v~ 174 (211)
.+..+ +..++...|...++..+++.+..+.|.+++++||+|+ + +..++.+++.+.+....++++.
T Consensus 92 ~~~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~l~~~~d~~lv~~~D~~~-~~~~~l~~l~~~~~~~~~~~i~~~ 169 (323)
T 2pa4_A 92 TDQVEIIRRAADLIKAVPVTQDKPLGLGHAVGLAESVLDDDEDVVAVMLPDDLV-LPTGVMERMAQVRAEFGGSVLCAV 169 (323)
T ss_dssp HHHHHHTTHHHHHCEEEEEECSSCCCHHHHHHTTGGGSCSSCCEEEEECTTEEE-ESSCHHHHHHHHHHTTCSEEEEEE
T ss_pred hhhhhhhhccccCcceEEEeCCccCCcHHHHHHHHHHhcCCCCeEEEEeCCccc-CchHHHHHHHHHHHhcCCcEEEEE
Confidence 23444 2223334566677888887774333459999999999 7 6899999998865433444443
No 43
>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis}
Probab=99.65 E-value=1.4e-15 Score=131.05 Aligned_cols=154 Identities=12% Similarity=0.061 Sum_probs=106.6
Q ss_pred CCCcEEEEEecCCCCCCCC-Ccccccc--CCeehHHHHHHHHHcCCCCCeEEEEcCc---HHHHHHHHH---cCCe--Ee
Q 028257 46 FRSRVVGIIPARFASSRFE-GKPLVNI--LGKPMIQRTWERSKLATTLDHLVVATDD---EKIAECCQQ---FGAD--VI 114 (211)
Q Consensus 46 ~~m~i~aIIlA~G~ssRlg-~K~ll~l--~GkpLl~~~i~~l~~~~~id~IVVvt~~---e~i~~~~~~---~~v~--vi 114 (211)
.||++.+||||||.|+||+ +|+|+++ +|+|||+|+++++.++ ++++|+|+++. +.+.+++.. .+.+ ++
T Consensus 2 ~~m~~~~vIlAaG~g~R~~~~K~l~~ig~~g~pli~~~l~~~~~~-~~~~i~vv~~~~~~~~~~~~~~~~~~~~~~i~~~ 80 (303)
T 3pnn_A 2 NAMKPTLFVLAAGMGSRYGSLKQLDGIGPGGDTIMDYSVYDAIRA-GFGRLVFVIRHSFEKEFREKILTKYEGRIPVELV 80 (303)
T ss_dssp -CCCCEEEEECTTCBCTTSSBCCCCCCSTTSCCHHHHHHHHHHHH-TCCEEEEEECGGGHHHHHHHTHHHHTTTSCEEEE
T ss_pred CCCceEEEEECCCCcccCCCCceEeEcCCCCeeHHHHHHHHHHHC-CCCeEEEEcCchHHHHHHHHHHHHhccCCcEEEE
Confidence 4678899999999999996 5999999 6999999999999887 59999999974 345554432 1333 33
Q ss_pred eCCc--------------ccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhC--CCeEEEEeeeeC
Q 028257 115 MTSE--------------SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA--PDAVFSTAVTSL 178 (211)
Q Consensus 115 ~~~~--------------~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~--~d~vv~v~~~~~ 178 (211)
..+. ...|...++..+.+.+ .+.++|+.+|+ +++.+.++.+++.+.++ .++.+++....+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~Gt~~al~~a~~~i---~~~~lV~~gD~-l~~~~~~~~l~~~~~~~~~~~~~~~v~~~~~ 156 (303)
T 3pnn_A 81 FQELDRLPEGFSCPEGREKPWGTNHAVLMGRDAI---REPFAVINADD-FYGRNGFEVLARKLMTLEGKQGEYCMVGYRV 156 (303)
T ss_dssp ECCTTCCCTTCCCCTTCCSCCCHHHHHHTTTTTC---CSCEEEEESSC-BCCHHHHHHHHHHHHTTTTCSSEEEEEEEEG
T ss_pred ecccccccccccccccccccCCcHHHHHHHHHhc---CCCEEEEECCe-ecCHHHHHHHHHHHHHhccccCceEEEEEEC
Confidence 3321 1234456777777766 36789999999 78998899999988641 233334433332
Q ss_pred CCCCCCCCC----CeEEEeCCCccEEeeecCC
Q 028257 179 KPEDAFDPN----RVKCVVDNHGYAIYFSRGL 206 (211)
Q Consensus 179 ~~~~~~d~~----~~~~v~~~~~~~~~~~~~~ 206 (211)
.. ++.+. ...+..|++|++..|.+++
T Consensus 157 ~~--~~~~~g~~~~G~v~~d~~g~v~~i~Ekp 186 (303)
T 3pnn_A 157 GN--TLSESGGVSRGVCQVDEKHLLTGVVERT 186 (303)
T ss_dssp GG--SCBTTBCEEEEEEEECTTSBEEEEEEEE
T ss_pred CC--ccCccCceeeeeEeeCCCCcEEEEEECC
Confidence 21 11111 1356778889999998775
No 44
>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A*
Probab=99.64 E-value=9.1e-16 Score=127.86 Aligned_cols=146 Identities=16% Similarity=0.193 Sum_probs=96.7
Q ss_pred CcEEEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcC--cHHHHHHHHHc-----CCeE-
Q 028257 48 SRVVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQF-----GADV- 113 (211)
Q Consensus 48 m~i~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~--~e~i~~~~~~~-----~v~v- 113 (211)
|++.+||||||.|+||+ +|+|++++|+|||+|+++++.++ ++++|+|+++ .+.+.+++.+. ++.+
T Consensus 1 m~~~avIlAaG~gtRl~~lt~~~pK~l~~i~gkpli~~~l~~l~~~-g~~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~~ 79 (259)
T 1tzf_A 1 MASKAVILAGGLGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVH-GIKDFIICCGYKGYVIKEYFANYFLHMSDVTFH 79 (259)
T ss_dssp CCCEEEEEECSCC--------CCCGGGCEETTEEHHHHHHHHHHHT-TCCEEEEEECTTHHHHHHHHHTHHHHHSCEEEE
T ss_pred CCcEEEEECCCCcccCCCccCCCCccccEECCEEHHHHHHHHHHHC-CCCEEEEEcccCHHHHHHHHhhccccccccccc
Confidence 45679999999999996 69999999999999999999998 4999999995 45666666542 3332
Q ss_pred -------eeCC------------cccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEE
Q 028257 114 -------IMTS------------ESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFST 173 (211)
Q Consensus 114 -------i~~~------------~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v 173 (211)
+.++ +...|...++..+++.+. ..+.++++.+|+ +. ...++++++.+.+ +.+. ++
T Consensus 80 ~~~~~~~~~~~~~~~~~v~~~~~~~~~gt~~al~~a~~~~~-~~~~~lv~~~D~-~~-~~~~~~~~~~~~~~~~~~--t~ 154 (259)
T 1tzf_A 80 MAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVK-DDEAFLFTYGDG-VA-DLDIKATIDFHKAHGKKA--TL 154 (259)
T ss_dssp GGGTEEEETTCCCCCCEEEEEECCSSCCHHHHHHHTGGGTT-TSSCEEEEETTE-EE-CCCHHHHHHHHHHHCCSE--EE
T ss_pred ccccceeeeeccccccceeeeecccccCcHHHHHHHHHhcC-CCCcEEEEECCE-ec-ccCHHHHHHHHHHhCCeE--EE
Confidence 2211 012344467777777763 257899999998 43 4678999988753 3333 22
Q ss_pred eeeeCCCCCCCCCCCe-EEEeCCCccEEeeecCCC
Q 028257 174 AVTSLKPEDAFDPNRV-KCVVDNHGYAIYFSRGLI 207 (211)
Q Consensus 174 ~~~~~~~~~~~d~~~~-~~v~~~~~~~~~~~~~~~ 207 (211)
...+ ++..+ .+..+ +|++..|.+++.
T Consensus 155 ~~~~-------~~~~~g~v~~~-~g~v~~~~ekp~ 181 (259)
T 1tzf_A 155 TATF-------PPGRFGALDIQ-AGQVRSFQEKPK 181 (259)
T ss_dssp EEEC-------CCCCSEEEEEE-TTEEEEEEESCS
T ss_pred EEec-------CCCCccEEEEc-CCEEEEEEecCC
Confidence 2221 12223 34455 788888887653
No 45
>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}
Probab=99.63 E-value=2.2e-15 Score=134.66 Aligned_cols=154 Identities=15% Similarity=0.149 Sum_probs=108.7
Q ss_pred CCC-cEEEEEecCCCCCCCC------CccccccCCe-ehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHH-cCC---
Q 028257 46 FRS-RVVGIIPARFASSRFE------GKPLVNILGK-PMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ-FGA--- 111 (211)
Q Consensus 46 ~~m-~i~aIIlA~G~ssRlg------~K~ll~l~Gk-pLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~-~~v--- 111 (211)
.|| ++.+||||||.|+||+ +|+|++++|+ |||+|+++++.++ ++++|+|+++. +.+.+++.+ ++.
T Consensus 8 ~mm~~~~avILAaG~gtRl~plT~~~pK~llpi~gk~pli~~~l~~l~~~-gi~~i~vv~~~~~~~i~~~~~~~~~~~~~ 86 (420)
T 3brk_X 8 PLARDAMAYVLAGGRGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNS-GIRRIGVATQYKAHSLIRHLQRGWDFFRP 86 (420)
T ss_dssp CGGGGEEEEEEECCCCGGGGGGGSSSCGGGSEETTTEETHHHHHHHHHHT-TCCEEEEEECTTCHHHHHHHHHHSCCCCG
T ss_pred hhhhceEEEEEcCCCCCccchhhcCCcccccccCCCCcHHHHHHHHHHhC-CCCeEEEEeCCChHHHHHHHhhhhccccc
Confidence 344 6899999999999997 6999999999 9999999999988 59999999975 677776654 442
Q ss_pred ------eEeeCCc----c--cCCChHHHHHHHHhhcc-CCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEEeeee
Q 028257 112 ------DVIMTSE----S--CRNGTERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTS 177 (211)
Q Consensus 112 ------~vi~~~~----~--~~g~~~si~~al~~l~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v~~~~ 177 (211)
.++.... + ..|...+++.+++.+.. +.+.+++++||+ +. ...++++++.+.+ ..+.++.+...+
T Consensus 87 ~~~~~v~i~~~~~~~~~~~~~~Gt~~al~~a~~~l~~~~~~~~lv~~~D~-~~-~~~l~~l~~~~~~~~~~~tl~~~~~~ 164 (420)
T 3brk_X 87 ERNESFDILPASQRVSETQWYEGTADAVYQNIDIIEPYAPEYMVILAGDH-IY-KMDYEYMLQQHVDSGADVTIGCLEVP 164 (420)
T ss_dssp GGTCEEEEECCC-------CCCCHHHHHHTTHHHHHHHCCSEEEEEESSC-EE-CBCTHHHHHHHHHTTCSEEEEEEEEE
T ss_pred cccCCEEEeCccccccCCccccCCHHHHHHHHHHHHhcCCCEEEEecccE-EE-chHHHHHHHHHHHcCCeEEEEEeecC
Confidence 2222111 1 14566788888887742 347899999999 54 4568899988854 345544443222
Q ss_pred CCCCCCCCC-CCeEEEeCCCccEEeeecCCC
Q 028257 178 LKPEDAFDP-NRVKCVVDNHGYAIYFSRGLI 207 (211)
Q Consensus 178 ~~~~~~~d~-~~~~~v~~~~~~~~~~~~~~~ 207 (211)
.. ++ ..-.+..+++|++..|.+++.
T Consensus 165 ~~-----~~~~~g~v~~d~~g~v~~~~ekp~ 190 (420)
T 3brk_X 165 RM-----EATGFGVMHVNEKDEIIDFIEKPA 190 (420)
T ss_dssp TT-----GGGGSEEEEECTTSBEEEEEESCS
T ss_pred cc-----ccCcccEEEECCCCcEEEeEeCCC
Confidence 11 12 233455688899999988754
No 46
>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*
Probab=99.62 E-value=1.4e-15 Score=134.60 Aligned_cols=138 Identities=17% Similarity=0.179 Sum_probs=97.3
Q ss_pred EEEEecCCCCCCCC------CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHc--CCeEeeCCcccCC
Q 028257 51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF--GADVIMTSESCRN 122 (211)
Q Consensus 51 ~aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~--~v~vi~~~~~~~g 122 (211)
.+||||||.|+||+ +|+|++++|+|||+|+++++.+++ +++++|+++++ +.+++... ++.++..+....|
T Consensus 2 ~aiIlA~G~g~R~~plt~~~~K~ll~i~g~pli~~~l~~l~~~~-~~~i~vv~~~~-i~~~~~~~~~~i~~~~~~~~~~g 79 (401)
T 2ggo_A 2 KAFILAAGSGERLEPITHTRPKAFVPILSKPLIEYQIEYLRKCG-IRDITVIVSSK-NKEYFEKKLKEISIVTQKDDIKG 79 (401)
T ss_dssp EEEEECCCCCGGGTTGGGTSCGGGCEETTEEHHHHHHHHHHHTT-CCEEEEEECGG-GHHHHHHHCTTCEEEECCTTCCB
T ss_pred eEEEEcCcCccccCcccCCCCcceeeECCEeHHHHHHHHHHHCC-CCEEEEEeCHH-HHHHhhccCCcEEEEeCCCCCCC
Confidence 48999999999995 699999999999999999999884 99999999877 66666554 4666554331334
Q ss_pred ChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeeeCCCCCCCCC-CCeEEEeCCCccEEe
Q 028257 123 GTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDP-NRVKCVVDNHGYAIY 201 (211)
Q Consensus 123 ~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~~~~~~~~d~-~~~~~v~~~~~~~~~ 201 (211)
...++..+++ .++++++.||+|+.+++.++++++ ..+..+.+. +.. |+ +.-.++.+.+|++..
T Consensus 80 ~~~~l~~~~~-----~~~~lv~~~D~~~~~~~~~~~l~~----~~~~~i~~~--~~~-----~~~~~~~v~~~~~g~v~~ 143 (401)
T 2ggo_A 80 TGAAILSAKF-----NDEALIIYGDLFFSNEKEICNIIT----LKENAIIGV--KVS-----NPKDYGVLVLDNQNNLSK 143 (401)
T ss_dssp STTTGGGCCC-----SSEEEEEETTEEESCSHHHHHHTT----CSSEEEEEE--ECS-----CCSSSCEEEECTTSSEEE
T ss_pred hHHHHHHhcc-----CCCEEEEeCccccccHHHHHHHHH----hcCCEEEEE--EcC-----CCcceeEEEECCCCeEEE
Confidence 4443333221 578999999999998999988886 234444332 221 11 122455566777777
Q ss_pred eecCC
Q 028257 202 FSRGL 206 (211)
Q Consensus 202 ~~~~~ 206 (211)
|.+++
T Consensus 144 ~~ek~ 148 (401)
T 2ggo_A 144 IIEKP 148 (401)
T ss_dssp EECSC
T ss_pred EEECC
Confidence 76643
No 47
>2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20
Probab=99.61 E-value=5.6e-15 Score=129.25 Aligned_cols=154 Identities=11% Similarity=0.089 Sum_probs=102.2
Q ss_pred CcEEEEEecCCCCCCCC-------CccccccCC-eehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcC-CeEeeCCc
Q 028257 48 SRVVGIIPARFASSRFE-------GKPLVNILG-KPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFG-ADVIMTSE 118 (211)
Q Consensus 48 m~i~aIIlA~G~ssRlg-------~K~ll~l~G-kpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~-v~vi~~~~ 118 (211)
|++.+||||||.|+||. +|+|++++| +|||+|+++++..+.++++++|++++++...+.+.++ ..++..+
T Consensus 1 M~m~~VILAgG~GtRl~Pls~~~~pK~ll~l~G~~pli~~~l~~l~~~~~~~~iiVvt~~~~~~~i~~~l~~~~~i~e~- 79 (337)
T 2cu2_A 1 MKTYALVMAGGRGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRRDQEAVARPYADGIRLLLEP- 79 (337)
T ss_dssp CCEEEEEECCCCCGGGTTTCBTTBCGGGCBCGGGCBHHHHHHHHHTTTSCGGGEEEEEEGGGHHHHGGGCSSSEEEEES-
T ss_pred CCeEEEEEcCCCcccCCccCCCCCCceEEEcCCCChHHHHHHHHHhCcCCCCCEEEEcChHHHHHHHHHhccCceEecC-
Confidence 56789999999999992 699999998 9999999999998755899999998765443333333 2323332
Q ss_pred ccCCChHHHHHHHHhhc--cCCCEEEEEcCCCcCCCHHHHHHHHHHHHh--CCCeEEEEeeeeCCCCCCCCCCCeEEEeC
Q 028257 119 SCRNGTERCNEALQKLE--KKYDIVVNIQGDEPLIEPEIIDGVVKALQA--APDAVFSTAVTSLKPEDAFDPNRVKCVVD 194 (211)
Q Consensus 119 ~~~g~~~si~~al~~l~--~~~d~vlv~~~D~Pli~~~~i~~li~~~~~--~~d~vv~v~~~~~~~~~~~d~~~~~~v~~ 194 (211)
...|...++..+.. +. ...+.+++++||+|+.+++.++.+++.+.+ ..+.++++..++..+++. .-....+
T Consensus 80 ~~~gta~ai~~a~~-l~~~~~~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~~~~vt~~i~p~~~~t~----yG~I~~~ 154 (337)
T 2cu2_A 80 LGRDTAGAVLLGVA-EALKEGAERLLVLPADHYVGDDEAYREALATMLEAAEEGFVVALGLRPTRPETE----YGYIRLG 154 (337)
T ss_dssp SCCHHHHHHHHHHH-HHHHHTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCTTCEEEEEECCSSCCSS----SCEEEEE
T ss_pred CCCCcHHHHHHHHH-HhccCCCCEEEEEECCccCCCHHHHHHHHHHHHHHHHcCCeEEEeeccCCCCCC----ceEEEEC
Confidence 22344445655554 32 135789999999999999998888776521 124555555444322221 2222234
Q ss_pred CC----ccEEeeecCCC
Q 028257 195 NH----GYAIYFSRGLI 207 (211)
Q Consensus 195 ~~----~~~~~~~~~~~ 207 (211)
++ +.+..|.+++.
T Consensus 155 ~~~~~~~~V~~f~EKp~ 171 (337)
T 2cu2_A 155 PREGAWYRGEGFVEKPS 171 (337)
T ss_dssp EEETTEEEEEEEECCCC
T ss_pred CcccccCeEEEEEeCCC
Confidence 44 67888888753
No 48
>2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A*
Probab=99.60 E-value=9.4e-15 Score=127.79 Aligned_cols=150 Identities=17% Similarity=0.237 Sum_probs=99.5
Q ss_pred EEEEecCCCCCCCC-------CccccccCC-eehHHHHHHHHHcCCCCCeEEEEcCcHHHHHHHHHcC----CeEeeCCc
Q 028257 51 VGIIPARFASSRFE-------GKPLVNILG-KPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFG----ADVIMTSE 118 (211)
Q Consensus 51 ~aIIlA~G~ssRlg-------~K~ll~l~G-kpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~~~~~~----v~vi~~~~ 118 (211)
.+||||||.|+||+ +|+|++++| +|||+|+++++....++++++|++++++...+.+.++ ..++..+
T Consensus 3 ~~VILAgG~GtRl~Pls~~~~pK~ll~l~g~~pli~~~l~~l~~~~~~~~iivvt~~~~~~~i~~~l~~~~~~~ii~e~- 81 (336)
T 2x65_A 3 KALILAGGSGERFWPLSTPETPKQFLKLFGNKSLMRWTFERVLEEMDPKDVIVVTHKDYVERTKKELPELPDENIIAEP- 81 (336)
T ss_dssp EEEEECCCBCGGGTTTSCTTCBGGGCCCBTTBCHHHHHHHHHHTTCCGGGEEEEEEGGGHHHHHHHCTTSCGGGEEEES-
T ss_pred EEEEECCCCCccCCCCcCCCCCceEEECCCCCcHHHHHHHHHhccCCCCcEEEEcChHHHHHHHHHhhccccceEEeCC-
Confidence 58999999999994 699999998 9999999999998656899999998654333333222 2444443
Q ss_pred ccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHH----HHhCCCeEEEEeeeeCCCCCCCCCCCeEEEeC
Q 028257 119 SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA----LQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVD 194 (211)
Q Consensus 119 ~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~----~~~~~d~vv~v~~~~~~~~~~~d~~~~~~v~~ 194 (211)
...|...++..+...+. ..+.+++++||+|+.+++.++.+++. +.+. +.++++..++..+++ ..-....+
T Consensus 82 ~~~gta~ai~~a~~~~~-~~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~~-~~~vt~~i~p~~~~~----~yG~I~~~ 155 (336)
T 2x65_A 82 MKKNTAPACFIGTKLAD-DDEPVLVLPADHRIPDTKKFWKTVKKALDALEKY-DGLFTFGIVPTRPET----GYGYIEIG 155 (336)
T ss_dssp SCCCHHHHHHHHHTTSC-TTCEEEEEETTCBCCCHHHHHHHHHHHHHHHHHH-CSEEEEEECCCSCCS----SSEEEEEE
T ss_pred CCCCcHHHHHHHHHhhC-CCCEEEEEcCCceeccHHHHHHHHHHHHHHHHhc-CCeEEEEeecccCCC----CceEEEEC
Confidence 23455566766666542 35789999999999998887777665 3331 234444433322221 12222334
Q ss_pred CC-----ccEEeeecCCC
Q 028257 195 NH-----GYAIYFSRGLI 207 (211)
Q Consensus 195 ~~-----~~~~~~~~~~~ 207 (211)
++ +.+..|.+++.
T Consensus 156 ~~~~~~~~~V~~f~EKp~ 173 (336)
T 2x65_A 156 EELEEGVHKVAQFREKPD 173 (336)
T ss_dssp EEEETTEEEEEEEEESCC
T ss_pred CccCCCccEEEEEEECCC
Confidence 33 57888887753
No 49
>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae}
Probab=99.56 E-value=6.7e-15 Score=123.86 Aligned_cols=141 Identities=14% Similarity=0.125 Sum_probs=97.2
Q ss_pred EEEecCCCCCCCC------CccccccCCeehHHHHHHHHHc-CCCCCeEEEEcCc--H---HHHHHHHHcCC---eEeeC
Q 028257 52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKL-ATTLDHLVVATDD--E---KIAECCQQFGA---DVIMT 116 (211)
Q Consensus 52 aIIlA~G~ssRlg------~K~ll~l~GkpLl~~~i~~l~~-~~~id~IVVvt~~--e---~i~~~~~~~~v---~vi~~ 116 (211)
+||||||.|+||. +|+|++++|+|||+|+++++.+ + ++++|+|+++. + .+.+...+++. .++..
T Consensus 2 ~iIlAaG~GtRl~plt~~~PK~llpv~gkpli~~~l~~l~~~~-gi~~iivv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (255)
T 4evw_A 2 IVIPMAGMSSRFFKAGYTQPKYMLEAHGQTLFEHSVNSFAAYF-ASTPFLFIVRNVYDTAVFVREKATQLGIKQFYIAEL 80 (255)
T ss_dssp EEEECCSCCHHHHHTTCCSCGGGCEETTEEHHHHHHGGGGGGT-TTSCEEEEEESSTTHHHHHHHHHHHHTCSSEEEEEE
T ss_pred EEEEcCCCCcccccCCCCCCccccEECCeEHHHHHHHHHhccC-CCceEEEEECchhhhHHHHHHHHHHcCCCCceEEEe
Confidence 7999999999994 6999999999999999999998 5 58898888753 2 33343444442 23444
Q ss_pred CcccCCChHHHHHHHHhhc----cCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeeeeCCCCCCCCCCCeEEE
Q 028257 117 SESCRNGTERCNEALQKLE----KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCV 192 (211)
Q Consensus 117 ~~~~~g~~~si~~al~~l~----~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~~~~~~~~~d~~~~~~v 192 (211)
++...|...++..|++.+. ...+.++|+.+|+ +++...+..+ ....+.++.+. ++. ++..-++.
T Consensus 81 ~~~~~Gt~~av~~a~~~l~~~~~~~~~~~lV~~gD~-l~~~~~~~~~----~~~~~~~i~~~--~~~-----~p~yG~v~ 148 (255)
T 4evw_A 81 HTETRGQAETVTLGLEELAKQGVDYQGSITVFNIDT-FRPNFVFPDI----SQHSDGYLEVF--QGG-----GDNWSFAK 148 (255)
T ss_dssp SSCCSSHHHHHHHHHHHHHHTTCCCCSCEEECCTTE-ECTTCCCCGG----GGSSSEEEEEE--ECC-----SSCSCEEE
T ss_pred CCCCCCHHHHHHHHHHHHhhcccCCCCcEEEEeCCE-EEecchhHHH----hhcCCcEEEEE--ecC-----CCceeEEE
Confidence 4445566678999998882 2356799999999 7754344332 34455544433 321 23455666
Q ss_pred eCCCc--cEEeeecC
Q 028257 193 VDNHG--YAIYFSRG 205 (211)
Q Consensus 193 ~~~~~--~~~~~~~~ 205 (211)
.+++| ++..|.++
T Consensus 149 ~d~~g~~~V~~i~EK 163 (255)
T 4evw_A 149 PEHAGSTKVIQTAEK 163 (255)
T ss_dssp ESSTTCCBEEEEESS
T ss_pred ECCCCCeEEEEEEec
Confidence 78888 88888876
No 50
>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*
Probab=99.53 E-value=5.6e-14 Score=126.40 Aligned_cols=154 Identities=17% Similarity=0.181 Sum_probs=100.3
Q ss_pred CCcEEEEEecCCCCCCCC------CccccccCCe-ehHHHHHHHHHcCCCCCeEEEEcCc--HHHHHHHHH-c--C----
Q 028257 47 RSRVVGIIPARFASSRFE------GKPLVNILGK-PMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ-F--G---- 110 (211)
Q Consensus 47 ~m~i~aIIlA~G~ssRlg------~K~ll~l~Gk-pLl~~~i~~l~~~~~id~IVVvt~~--e~i~~~~~~-~--~---- 110 (211)
|+++.+||||||.|+||+ +|+|++++|+ |||+|+++++.++ ++++|+|+++. +.+.+++.+ + +
T Consensus 18 ~~~~~avILAaG~gtRl~plT~~~pK~llpi~g~~pli~~~l~~l~~~-g~~~i~vv~~~~~~~i~~~~~~~~~~~~~~~ 96 (451)
T 1yp2_A 18 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNSASLNRHLSRAYASNMGGY 96 (451)
T ss_dssp HHHEEEEEC------CCTTTTTTSCGGGCEETTTEETTHHHHHHHHHT-TCCEEEEEESCCCHHHHHHHHHHCC------
T ss_pred ccceEEEEECCCCCCcccchhcCCcceeeEECCcceeHHHHHHHHHHC-CCCEEEEEeccCHHHHHHHHhhhhhcccccc
Confidence 345889999999999996 6999999999 9999999999987 59999999864 556555532 3 1
Q ss_pred -----CeEeeC---C---cccCCChHHHHHHHHhhcc-CCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEEEeeee
Q 028257 111 -----ADVIMT---S---ESCRNGTERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTS 177 (211)
Q Consensus 111 -----v~vi~~---~---~~~~g~~~si~~al~~l~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~v~~~~ 177 (211)
++++.. + +...|...+++.+++.+.. ..+.+++++||+ +.+ ..++++++.+.+ ..+.++.+....
T Consensus 97 ~~~~~v~i~~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~~~~lv~~~D~-~~~-~~l~~l~~~~~~~~~~~tl~~~~~~ 174 (451)
T 1yp2_A 97 KNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDH-LYR-MDYEKFIQAHRETDADITVAALPMD 174 (451)
T ss_dssp --CCEEEEEESCSSTTSCCCCCSHHHHHHHTHHHHTTSCCSEEEEECSCE-ECC-CCHHHHHHHHHHTTCSEEEEEEEEC
T ss_pred cccCcEEEecccccccccccccCcHHHHHHHHHHHHhcCCCeEEEecCcE-EEc-CCHHHHHHHHHHcCCcEEEEEEEcC
Confidence 123221 1 1124556788888888742 257999999999 554 468899988854 344444332221
Q ss_pred CCCCCCCCCCCeEEEeCCCccEEeeecCCC
Q 028257 178 LKPEDAFDPNRVKCVVDNHGYAIYFSRGLI 207 (211)
Q Consensus 178 ~~~~~~~d~~~~~~v~~~~~~~~~~~~~~~ 207 (211)
..+ . .+.-.+..|.++++++|.+++.
T Consensus 175 ~~~--~--~~~g~v~~d~~~~v~~~~ekp~ 200 (451)
T 1yp2_A 175 EKR--A--TAFGLMKIDEEGRIIEFAEKPQ 200 (451)
T ss_dssp HHH--H--TTSEEEEECTTSBEEEEEESCC
T ss_pred hhh--c--ccCCEEEECCCCCEEEEEECCC
Confidence 000 0 1233566788899999998864
No 51
>2i5e_A Hypothetical protein MM_2497; APC86122, methanosarcina mazei GO1, hypothetic protein, STRU genomics, PSI-2, protein structure initiative; 2.10A {Methanosarcina mazei} SCOP: c.68.1.21
Probab=99.04 E-value=3.3e-10 Score=92.11 Aligned_cols=102 Identities=21% Similarity=0.253 Sum_probs=78.2
Q ss_pred EEEEEec--CCCCCCCCC---ccccccCCeehHHHHHHHHHcCCCCCeE-EEEcCcHHHHHHHHHcCCeEeeCCcccCCC
Q 028257 50 VVGIIPA--RFASSRFEG---KPLVNILGKPMIQRTWERSKLATTLDHL-VVATDDEKIAECCQQFGADVIMTSESCRNG 123 (211)
Q Consensus 50 i~aIIlA--~G~ssRlg~---K~ll~l~GkpLl~~~i~~l~~~~~id~I-VVvt~~e~i~~~~~~~~v~vi~~~~~~~g~ 123 (211)
+.+|||+ |...||+++ +......++||++|+++++..+ .++.+ +|+++++....+ +++.++.++ .|.
T Consensus 4 ~~~vip~k~g~~KtRL~~~l~~~~~~~l~~~ll~~vl~~l~~~-~~~~v~vvv~~~~~~~~~---~~~~~v~~~---~gl 76 (211)
T 2i5e_A 4 MRAVIPYKKAGAKSRLSPVLSLQEREEFVELMLNQVISSLKGA-GIEQVDILSPSVYGLEEM---TEARVLLDE---KDL 76 (211)
T ss_dssp CEEEEECCCTTTTGGGTTTSCHHHHHHHHHHHHHHHHHHHHHT-TCSEEEEEESSCTTCSSC---CSSEEEECC---SCH
T ss_pred eEEEEEeCCCCCccccCccCCHHHHHHHHHHHHHHHHHHHHHc-CCceEEEEEcCcHHHHhh---cCCEEEECC---CCH
Confidence 5689999 667788863 2223355799999999999987 48899 888876543222 467776654 455
Q ss_pred hHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHH
Q 028257 124 TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVK 161 (211)
Q Consensus 124 ~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~ 161 (211)
.+++..+++.+ .++++++.||+|++++++++.+++
T Consensus 77 ~~sl~~a~~~~---~~~vlvi~~D~P~l~~~~i~~l~~ 111 (211)
T 2i5e_A 77 NEALNRYLKEA---EEPVLIVMADLPLLSPEHIKEISS 111 (211)
T ss_dssp HHHHHHHHHHC---CSCEEEECSCCTTCCHHHHHHHTT
T ss_pred HHHHHHHHHhc---CCCEEEEcCCcCCCCHHHHHHHHc
Confidence 67888888876 478999999999999999999987
No 52
>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae}
Probab=98.83 E-value=2.5e-08 Score=91.15 Aligned_cols=122 Identities=12% Similarity=0.162 Sum_probs=77.8
Q ss_pred CCcEEEEEecCCCCCCCC---CccccccC-CeehHHHHHHHHHcCC---CCC-eEEEEcC---cHHHHHHHHHc---CCe
Q 028257 47 RSRVVGIIPARFASSRFE---GKPLVNIL-GKPMIQRTWERSKLAT---TLD-HLVVATD---DEKIAECCQQF---GAD 112 (211)
Q Consensus 47 ~m~i~aIIlA~G~ssRlg---~K~ll~l~-GkpLl~~~i~~l~~~~---~id-~IVVvt~---~e~i~~~~~~~---~v~ 112 (211)
..++.+||||||.|+||+ +|.|+++. |+|||+|++++++..+ ++. +++|++. ++.+.++++++ +.+
T Consensus 90 ~~k~avViLAGG~GTRmgs~~PK~l~~V~~gk~~Le~~i~~i~~l~~~~G~~Ip~vImts~~t~e~t~~~~~~~~~fg~~ 169 (488)
T 2i5k_A 90 LSKLAVLKLNGGLGTSMGCVGPKSVIEVREGNTFLDLSVRQIEYLNRQYDSDVPLLLMNSFNTDKDTEHLIKKYSANRIR 169 (488)
T ss_dssp GGGEEEEEECCCBSGGGTCCSBSTTSCCBTTBCHHHHHHHHHHHHHHHHTCCCEEEEECCTTTHHHHHHHHGGGCSSSCE
T ss_pred cCCceEEEEcCCCcccCCCCCCccccccCCCCcHHHHHHHHHHHhHHhcCCCccEEEEECCCCHHHHHHHHHhccccCce
Confidence 346889999999999997 59999998 9999999999988652 122 3555443 46777777653 344
Q ss_pred E--eeCC----------------------cccCCChHHHHHH------HHhhc-cCCCEEEEEcCCCcCCCHHHHHHHHH
Q 028257 113 V--IMTS----------------------ESCRNGTERCNEA------LQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVK 161 (211)
Q Consensus 113 v--i~~~----------------------~~~~g~~~si~~a------l~~l~-~~~d~vlv~~~D~Pli~~~~i~~li~ 161 (211)
+ +... ...+.|+..+..+ ++.+. ...++++|+.+|. ++...++.. +.
T Consensus 170 i~~f~Q~~~P~i~~d~~~~l~~~~~~~~~~~~P~GtGga~~~L~~sg~l~~l~~~g~~~v~V~ngDn-L~~~~d~~~-L~ 247 (488)
T 2i5k_A 170 IRSFNQSRFPRVYKDSLLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDN-LGATVDLKI-LN 247 (488)
T ss_dssp EEEECCCCEECEETTTCCBSCSSSSSCTTSEECCCGGGHHHHHHHHTHHHHHHHTTCCEEEEECTTB-SSCCCCHHH-HH
T ss_pred EEEEEeCccceEccccceeeccCCCCCceeeecCCCchhhhhhhhcCcHHHHHhcCCCEEEEEeCCc-CCCcccHHH-HH
Confidence 3 2111 0123333322232 34442 2368999999999 887766653 35
Q ss_pred HHH-hCCCeE
Q 028257 162 ALQ-AAPDAV 170 (211)
Q Consensus 162 ~~~-~~~d~v 170 (211)
.+. ++.+..
T Consensus 248 ~~~~~~a~~t 257 (488)
T 2i5k_A 248 HMIETGAEYI 257 (488)
T ss_dssp HHHHSCCSEE
T ss_pred HHHhcCCcEE
Confidence 543 333433
No 53
>2icy_A Probable UTP-glucose-1-phosphate uridylyltransferase 2; AT3G03250, UDP, putative UDP-glucose pyrophosphorylase; HET: UPG U5P; 1.64A {Arabidopsis thaliana} SCOP: b.81.1.4 c.68.1.5 PDB: 2icx_A* 1z90_A 2q4j_A
Probab=98.77 E-value=6.1e-08 Score=88.20 Aligned_cols=125 Identities=10% Similarity=0.087 Sum_probs=79.0
Q ss_pred CcEEEEEecCCCCCCCC---CccccccC-CeehHHHHHHHHHcCC---C--CCeEEEEcC--cHHHHHHHHH---cCCeE
Q 028257 48 SRVVGIIPARFASSRFE---GKPLVNIL-GKPMIQRTWERSKLAT---T--LDHLVVATD--DEKIAECCQQ---FGADV 113 (211)
Q Consensus 48 m~i~aIIlA~G~ssRlg---~K~ll~l~-GkpLl~~~i~~l~~~~---~--id~IVVvt~--~e~i~~~~~~---~~v~v 113 (211)
.++.+||||||.|+||+ +|+++++. |+|+|++.+++++..+ + +..++.++. ++.+.+++++ +|+++
T Consensus 78 ~k~~vviLAGGlGTRLg~~~PK~llpv~~gkp~Le~~i~~l~~~~~~~G~~ip~vimts~~t~e~t~~~f~~~~~fG~~I 157 (469)
T 2icy_A 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVRDGLTFLDLIVIQIENLNNKYGCKVPLVLMNSFNTHDDTHKIVEKYTNSNVDI 157 (469)
T ss_dssp TTEEEEEEECCBSGGGTCCSBGGGSEEETTEEHHHHHHHHHHHHHHHHSCCCCEEEEECTTTHHHHHHHHGGGTTSSSCE
T ss_pred ccceEEEEcCCccccCCCCCCccccccCCCCCHHHHHHHHHHHHHHhcCCCccEEEEeCCCCHHHHHHHHHhcccCCceE
Confidence 46889999999999997 69999998 9999999999998752 2 454455554 5677887754 46555
Q ss_pred ee--C----------------------CcccCCChHHHHHH------HHhhc-cCCCEEEEEcCCCcCCCHHHHHHHHHH
Q 028257 114 IM--T----------------------SESCRNGTERCNEA------LQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKA 162 (211)
Q Consensus 114 i~--~----------------------~~~~~g~~~si~~a------l~~l~-~~~d~vlv~~~D~Pli~~~~i~~li~~ 162 (211)
.+ . .+....|+.++..+ ++.+. ...++++|+.+|. +....+. .++..
T Consensus 158 ~~f~Q~~~P~i~~e~~~~l~~~~~~~~~e~~P~GtGG~~~~L~~sGll~~l~~~G~e~~~V~n~Dn-L~~~~d~-~ll~~ 235 (469)
T 2icy_A 158 HTFNQSKYPRVVADEFVPWPSKGKTDKEGWYPPGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDN-LGAIVDL-TILKH 235 (469)
T ss_dssp EEEECCCEECEETTTTEEGGGGTCCSGGGEECCCGGGHHHHHHHHSHHHHHHTTTCCEEEEEETTB-TTCCCCH-HHHHH
T ss_pred EEEEecceeeEccccCccccCCCCCccccCCcCCchHHHHHHHhcCcHHHHHhcCCCEEEEEECCc-CCcccCH-HHHHH
Confidence 31 1 11223344333333 23332 2368999999998 4322222 34444
Q ss_pred H-HhCCCeEEEEe
Q 028257 163 L-QAAPDAVFSTA 174 (211)
Q Consensus 163 ~-~~~~d~vv~v~ 174 (211)
+ .++.+..+.+.
T Consensus 236 ~~~~~a~~t~~v~ 248 (469)
T 2icy_A 236 LIQNKNEYCMEVT 248 (469)
T ss_dssp HHHHTCSEEEEEE
T ss_pred HHHcCCCeeEEEE
Confidence 4 34456555443
No 54
>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A*
Probab=98.76 E-value=1.9e-07 Score=85.63 Aligned_cols=104 Identities=18% Similarity=0.188 Sum_probs=70.0
Q ss_pred CcEEEEEecCCCCCCCC---Ccccccc---CCeehHHHHHHHHHc--------CC---CCCeEEEEcC--cHHHHHHHHH
Q 028257 48 SRVVGIIPARFASSRFE---GKPLVNI---LGKPMIQRTWERSKL--------AT---TLDHLVVATD--DEKIAECCQQ 108 (211)
Q Consensus 48 m~i~aIIlA~G~ssRlg---~K~ll~l---~GkpLl~~~i~~l~~--------~~---~id~IVVvt~--~e~i~~~~~~ 108 (211)
.++.+||||||.|+||| +|+++++ .|+|+|++.+++++. .+ .+..+++++. ++.+.+++++
T Consensus 101 ~kvavViLAGG~GTRLg~~~PK~l~pv~~~~gk~~le~~~e~l~~lq~la~~~~G~~~~ip~vImtS~~t~e~t~~~f~~ 180 (505)
T 1jv1_A 101 NKVAVLLLAGGQGTRLGVAYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKEFFTK 180 (505)
T ss_dssp TCEEEEEECCCCCCTTSCSSCGGGCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECTTTHHHHHHHHHH
T ss_pred CceEEEEEcCCccccCCCCCCCccceeecCCCCcHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCHHHHHHHHHh
Confidence 46889999999999998 6999999 799999999999876 12 3656666664 4677777754
Q ss_pred ---cCCe---E--eeCC-------------------cccCCChHHHHHHHH------hhc-cCCCEEEEEcCCCcCC
Q 028257 109 ---FGAD---V--IMTS-------------------ESCRNGTERCNEALQ------KLE-KKYDIVVNIQGDEPLI 151 (211)
Q Consensus 109 ---~~v~---v--i~~~-------------------~~~~g~~~si~~al~------~l~-~~~d~vlv~~~D~Pli 151 (211)
+|++ + +... .....|+.+++.++. .+. ...++++|+.+|.++.
T Consensus 181 ~~~fGl~~~~I~~f~Q~~~P~i~~~g~~~l~~~~~~e~~P~GtGG~~~~L~~sg~L~~l~~~g~e~~~V~n~Dn~L~ 257 (505)
T 1jv1_A 181 HKYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNILV 257 (505)
T ss_dssp TGGGGSCGGGEEEEECCEEECEETTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEETTBTTC
T ss_pred hhhcCCCcCceEEEEecceEEEcCCCcccccCCcccccCCCCchHHHHHHHHcCcHHHHHhcCCCEEEEEECCcccc
Confidence 4542 3 2211 112233334444433 221 1358999999999866
No 55
>2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A*
Probab=98.52 E-value=5.4e-07 Score=82.59 Aligned_cols=58 Identities=12% Similarity=0.123 Sum_probs=47.0
Q ss_pred cEEEEEecCCCCCCCC---CccccccC-CeehHHHHHHHHHcCC-----CCCeEEEEcC---cHHHHHHHH
Q 028257 49 RVVGIIPARFASSRFE---GKPLVNIL-GKPMIQRTWERSKLAT-----TLDHLVVATD---DEKIAECCQ 107 (211)
Q Consensus 49 ~i~aIIlA~G~ssRlg---~K~ll~l~-GkpLl~~~i~~l~~~~-----~id~IVVvt~---~e~i~~~~~ 107 (211)
++.+||||||.|+||+ +|++++++ |+|+|++.++++...+ .+ ++++.+. ++.+.++++
T Consensus 75 k~avViLAGGlGTRLg~~~PK~llpV~~gk~fLe~~ie~l~~~~~~~g~~i-p~viMtS~~t~e~t~~~f~ 144 (505)
T 2oeg_A 75 STVVLKLNGGLGTGMGLCDAKTLLEVKDGKTFLDFTALQVQYLRQHCSEHL-RFMLMDSFNTSASTKSFLK 144 (505)
T ss_dssp TEEEEEEECCCCGGGTCCSCGGGSEEETTEEHHHHHHHHHHHHHHHTCTTC-EEEEEECHHHHHHHHHHHH
T ss_pred cceEEEEcCCcccccCCCCCCcccccCCCCcHHHHHHHHHHHHHHhcCCCc-CEEEEeCCCCHHHHHHHHh
Confidence 6889999999999997 69999999 9999999999998753 13 4555553 466777765
No 56
>3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica}
Probab=98.48 E-value=2.4e-06 Score=76.22 Aligned_cols=105 Identities=22% Similarity=0.228 Sum_probs=69.4
Q ss_pred cEEEEEecCCCCCCCC---Ccccccc---CCeehHHHHHHHHHc------------CCCCCeEEEEcC--cHHHHHHHHH
Q 028257 49 RVVGIIPARFASSRFE---GKPLVNI---LGKPMIQRTWERSKL------------ATTLDHLVVATD--DEKIAECCQQ 108 (211)
Q Consensus 49 ~i~aIIlA~G~ssRlg---~K~ll~l---~GkpLl~~~i~~l~~------------~~~id~IVVvt~--~e~i~~~~~~ 108 (211)
++.+|+||||.|+||| +|.++++ .|+|++++.++++++ ...+..++.++. ++.+.+++++
T Consensus 35 kvavvlLAGG~GTRLG~~~PK~~~~Vgl~~gks~lq~~~e~i~~lq~l~~~~~~~~~~~Ip~~IMtS~~t~e~t~~~f~~ 114 (405)
T 3oc9_A 35 KTALITPAGGQGSRLGFEHPKGMFVLPFEIPKSIFQMTSERLLRLQELASEYSHQKNVMIHWFLMTNEETIEEINNYFKE 114 (405)
T ss_dssp CEEEEEECCSBCTTTTCCSBGGGCEECSSSCEEHHHHHHHHHHHHHHHHHHHHCCSCCCCEEEEEECTTTHHHHHHHHHH
T ss_pred ceEEEEecCCCcccccCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHhhhccccCCCCCEEEEeCCccHHHHHHHHHh
Confidence 6889999999999997 5999999 899999999998864 124654444443 5777787764
Q ss_pred ---cCCe---Ee--eC-------------------CcccCCChHHHHHHHH------hhc-cCCCEEEEEcCCCcCCCH
Q 028257 109 ---FGAD---VI--MT-------------------SESCRNGTERCNEALQ------KLE-KKYDIVVNIQGDEPLIEP 153 (211)
Q Consensus 109 ---~~v~---vi--~~-------------------~~~~~g~~~si~~al~------~l~-~~~d~vlv~~~D~Pli~~ 153 (211)
+|.+ +. .. ....+.|...++.+|. .+. ..-+++++...|.++...
T Consensus 115 ~~~fGl~~~~i~~f~Q~~~P~i~~dg~i~l~~~~~i~~~P~GhGgi~~aL~~sG~Ld~l~~~Gieyi~v~nvDN~L~~~ 193 (405)
T 3oc9_A 115 HQYFGLSSEQIHCFPQGMLPVVDFNGKILYEKKDKPYMAPNGHGGLFKALKDNGILEFMNEKGIKYSVAHNVDNILCKD 193 (405)
T ss_dssp TGGGGSCTTSEEEEECCEEECBCTTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEECTTBTTCCS
T ss_pred CcccCCCccceEEEeeCceeEEecCCCeecCCCCccccccCCChHHHHHHHHCCcHHHHHhcCCEEEEEEeCCCccccc
Confidence 3442 21 10 0112234434444443 221 235799999999988744
No 57
>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A*
Probab=98.37 E-value=2.7e-06 Score=77.69 Aligned_cols=60 Identities=15% Similarity=0.125 Sum_probs=47.9
Q ss_pred cEEEEEecCCCCCCCC---CccccccC---CeehHHHHHHHHHcCC-------------CCCeEEEEcC--cHHHHHHHH
Q 028257 49 RVVGIIPARFASSRFE---GKPLVNIL---GKPMIQRTWERSKLAT-------------TLDHLVVATD--DEKIAECCQ 107 (211)
Q Consensus 49 ~i~aIIlA~G~ssRlg---~K~ll~l~---GkpLl~~~i~~l~~~~-------------~id~IVVvt~--~e~i~~~~~ 107 (211)
++.+||||||.|+||| +|++++++ |+|+|++.++++...+ .+..++.+++ ++.+.++++
T Consensus 103 kvavvlLaGG~GTRLg~~~PK~l~~v~l~~gk~~l~~~~e~l~~~~~~~~~~~G~~~~~~ip~~ImtS~~t~~~t~~~~~ 182 (486)
T 2yqc_A 103 EVAVLLMAGGQGTRLGSSAPKGCFNIELPSQKSLFQIQAEKILKIEQLAQQYLKSTKKPIINWYIMTSGPTRNATESFFI 182 (486)
T ss_dssp CEEEEEEEESBCGGGTCSSBGGGCBCCCTTCCBHHHHHHHHHHHHHHHHHHHHTCSSCCCCEEEEEECGGGHHHHHHHHH
T ss_pred CeEEEEEcCCccccCCCCCCCccceecCCCCCcHHHHHHHHHHHHHHHhhhhcCCCcCCccCEEEEECCCCHHHHHHHHh
Confidence 5789999999999997 69999999 9999999999998752 2555555554 466777775
Q ss_pred H
Q 028257 108 Q 108 (211)
Q Consensus 108 ~ 108 (211)
+
T Consensus 183 ~ 183 (486)
T 2yqc_A 183 E 183 (486)
T ss_dssp H
T ss_pred h
Confidence 4
No 58
>3cgx_A Putative nucleotide-diphospho-sugar transferase; YP_389115.1, joint center for structural genomics; 1.90A {Desulfovibrio desulfuricans subsp}
Probab=98.07 E-value=1.4e-05 Score=66.51 Aligned_cols=97 Identities=20% Similarity=0.204 Sum_probs=65.4
Q ss_pred eehHHHHHHHHHcCCCCCeEEEEcCcHHHHHH--HHHcCCeEeeCCcccCCChHHHHHHHHhh-ccCCCEEEEEcCCCcC
Q 028257 74 KPMIQRTWERSKLATTLDHLVVATDDEKIAEC--CQQFGADVIMTSESCRNGTERCNEALQKL-EKKYDIVVNIQGDEPL 150 (211)
Q Consensus 74 kpLl~~~i~~l~~~~~id~IVVvt~~e~i~~~--~~~~~v~vi~~~~~~~g~~~si~~al~~l-~~~~d~vlv~~~D~Pl 150 (211)
++|++++++.+.+. ..+.++++++++....+ ..-.+..+..+++...|..+++.+|++.+ ....+.++++.+|+|+
T Consensus 37 ~~ll~~tl~~~~~~-~~~~vvvvt~~~~~~~~~~~~~~~~~~~~~~q~~~gLg~rl~~a~~~~~~~~~~~vliigaD~P~ 115 (242)
T 3cgx_A 37 RHFVQDMLQGLARL-HADLHICYVPGDADLPEKFKAWLGPQHMFAAQQGLDLGERMKHAMQKAFDDGYDRVVLMGSDIPD 115 (242)
T ss_dssp HHHHHHHHHHHTTS-SSEEEEEECCCCTTHHHHHHHHHCTTSEEEECCSSSHHHHHHHHHHHHHHTTCSEEEEECSSCTT
T ss_pred HHHHHHHHHHHHhC-CCCEEEEEcCCchhhhhhhhhhccCCcEEecCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCCCCC
Confidence 69999999999987 46666677653221111 11123233333333334457899998876 3346789999999999
Q ss_pred CCHHHHHHHHHHHHhCCCeEEE
Q 028257 151 IEPEIIDGVVKALQAAPDAVFS 172 (211)
Q Consensus 151 i~~~~i~~li~~~~~~~d~vv~ 172 (211)
+++++|+++++++.+ .+.+++
T Consensus 116 L~~~~l~~a~~~l~~-~d~Vig 136 (242)
T 3cgx_A 116 YPCELVQKALNDLQH-YDAAIG 136 (242)
T ss_dssp CCHHHHHHHHHHTTT-CSEEEE
T ss_pred CCHHHHHHHHHHhcc-CCeEEE
Confidence 999999999998765 455554
No 59
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=97.00 E-value=0.0083 Score=48.30 Aligned_cols=105 Identities=14% Similarity=0.196 Sum_probs=68.2
Q ss_pred CcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCC-eEEEEcC--cHHHHHHHHHc----CCeEeeCCc--
Q 028257 48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLD-HLVVATD--DEKIAECCQQF----GADVIMTSE-- 118 (211)
Q Consensus 48 m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id-~IVVvt~--~e~i~~~~~~~----~v~vi~~~~-- 118 (211)
|++++|||+- +....|..+++.+.+...-+ +|+|+-| .+...++++++ .+.++..+.
T Consensus 1 p~vSViIp~y--------------n~~~~l~~~l~Sl~~q~~~~~eiivvDd~S~d~t~~~~~~~~~~~~i~~i~~~~~~ 66 (255)
T 1qg8_A 1 PKVSVIMTSY--------------NKSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLNDNRVRFYQSDISG 66 (255)
T ss_dssp CCEEEEEEES--------------SCTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGGSTTEEEEECCCCS
T ss_pred CeEEEEEEcC--------------CCHHHHHHHHHHHHhccCCceEEEEEECCCCchHHHHHHHHhhcCCEEEEeccccc
Confidence 4567777763 34567888888887643222 5666654 35555555554 445454431
Q ss_pred -----ccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCe
Q 028257 119 -----SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDA 169 (211)
Q Consensus 119 -----~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~ 169 (211)
.-.|...+...|++.. +.|+++++++|. .+.++.+..+++.+.++++.
T Consensus 67 ~~~~~~n~G~~~a~N~gi~~a--~g~~i~~lD~Dd-~~~~~~l~~~~~~~~~~~~~ 119 (255)
T 1qg8_A 67 VKERTEKTRYAALINQAIEMA--EGEYITYATDDN-IYMPDRLLKMVRELDTHPEK 119 (255)
T ss_dssp HHHHHSSCHHHHHHHHHHHHC--CCSEEEEEETTE-EECTTHHHHHHHHHHHCTTC
T ss_pred ccccccccCHHHHHHHHHHHc--CCCEEEEeCCCC-ccChHHHHHHHHHHHhCCCc
Confidence 1123334566788876 579999999999 57899999999999765443
No 60
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=96.95 E-value=0.017 Score=45.82 Aligned_cols=107 Identities=18% Similarity=0.233 Sum_probs=69.1
Q ss_pred CCcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCC-eEEEEcC--cH----HHHHHHHHc-CCeEeeCCc
Q 028257 47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLD-HLVVATD--DE----KIAECCQQF-GADVIMTSE 118 (211)
Q Consensus 47 ~m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id-~IVVvt~--~e----~i~~~~~~~-~v~vi~~~~ 118 (211)
++++.+|||+- +....|..+|+.+.+...-+ +|+|+-| .+ .++++..+. .+.++. .
T Consensus 4 ~p~vsViIp~y--------------n~~~~l~~~l~Sl~~q~~~~~eiIvvDd~S~d~t~~~~~~~~~~~~~i~~i~-~- 67 (240)
T 3bcv_A 4 IPKVSVIVPIY--------------NVEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAAQYPNIKVIH-K- 67 (240)
T ss_dssp CCSEEEEEEES--------------SCTTTHHHHHHHHHTCSSSSEEEEEEECCCSSSHHHHHHHHHHHCSSEEEEE-C-
T ss_pred CCcEEEEEecC--------------CCHHHHHHHHHHHHhCcCCCeEEEEEECCCCcCHHHHHHHHHhhCCCEEEEE-C-
Confidence 35688888874 33467788888887643222 5666654 22 233343333 344443 2
Q ss_pred ccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh-CCCeEEE
Q 028257 119 SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFS 172 (211)
Q Consensus 119 ~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~vv~ 172 (211)
.-.|...+...|++.. +.|+++++++|. .+.++.++.+++.+.+ +.+.+++
T Consensus 68 ~n~G~~~a~N~g~~~a--~g~~i~~lD~Dd-~~~~~~l~~l~~~~~~~~~~~v~~ 119 (240)
T 3bcv_A 68 KNAGLGMACNSGLDVA--TGEYVAFCDSDD-YVDSDMYMTMYNVAQKYTCDAVFT 119 (240)
T ss_dssp CCCCHHHHHHHHHHHC--CSSEEEECCTTC-CCCTTHHHHHHHHHHHHTCSEEEC
T ss_pred CCCChHHHHHHHHHHc--CCCEEEEECCCC-cCCHHHHHHHHHHHHhcCCCEEEE
Confidence 2334456677888887 579999999998 7899999999999865 5565543
No 61
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=96.89 E-value=0.011 Score=50.39 Aligned_cols=111 Identities=19% Similarity=0.123 Sum_probs=74.0
Q ss_pred CCCcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCC--CCCeEEEEcC--cHHHHHHHHHcCCeEee------
Q 028257 46 FRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLAT--TLDHLVVATD--DEKIAECCQQFGADVIM------ 115 (211)
Q Consensus 46 ~~m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~--~id~IVVvt~--~e~i~~~~~~~~v~vi~------ 115 (211)
.++++.+|||+- +....|..+++.+.+.. ...+|+|+-| .+...+++++++.++..
T Consensus 46 ~~~~vSViIp~y--------------N~~~~l~~~l~sl~~q~~~~~~eiivVDdgS~D~t~~~~~~~~~~~~~~~~~~~ 111 (329)
T 3ckj_A 46 AGRTISVVLPAL--------------DEEDTIGSVIDSISPLVDGLVDELIVLDSGSTDDTEIRAVAAGARVVSREQALP 111 (329)
T ss_dssp TTCCEEEEEEES--------------SCTTTHHHHHHHHGGGBTTTBSEEEEEECSCCSSHHHHHHHTTCEEEEHHHHCT
T ss_pred cCCcEEEEEeeC--------------CCHHHHHHHHHHHHHhhCCCCcEEEEEeCCCCchHHHHHHHhhhhhccceeeec
Confidence 346788888884 33456778888887542 2357777764 35556667777665422
Q ss_pred CCcccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhC--CCeEEE
Q 028257 116 TSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA--PDAVFS 172 (211)
Q Consensus 116 ~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~--~d~vv~ 172 (211)
..+.-.|...++..|++.. +.|+++++++|.-.+.++.+..+++.+.++ .+.+++
T Consensus 112 ~~~~n~G~~~a~n~g~~~a--~gd~i~~lD~D~~~~~p~~l~~l~~~l~~~~~~~~v~g 168 (329)
T 3ckj_A 112 EVPIRPGKGEALWRSLAAS--RGDIVVFVDSDLINPHPMFVPWLVGPLLTGDGVHLVKS 168 (329)
T ss_dssp TSCCCCSHHHHHHHHHHHC--CCSEEEECCTTEESCCTTHHHHHHHHHHSCSSCCEEEE
T ss_pred cCCCCCCHHHHHHHHHHhC--CCCEEEEECCCCCCcChHHHHHHHHHHHhCCCccEEEE
Confidence 1222234456677888877 579999999999547899999999987544 344444
No 62
>3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A*
Probab=96.77 E-value=0.0012 Score=61.73 Aligned_cols=63 Identities=10% Similarity=0.048 Sum_probs=49.1
Q ss_pred cEEEEEecCCCCCCCC---CccccccC---CeehHHHHHHHHHcCCCC-CeEEEEcC---cHHHHHHHHHcCC
Q 028257 49 RVVGIIPARFASSRFE---GKPLVNIL---GKPMIQRTWERSKLATTL-DHLVVATD---DEKIAECCQQFGA 111 (211)
Q Consensus 49 ~i~aIIlA~G~ssRlg---~K~ll~l~---GkpLl~~~i~~l~~~~~i-d~IVVvt~---~e~i~~~~~~~~v 111 (211)
++.+|+||||.|+||| +|.+++++ |+++++..++++.+..+. -.++|.|+ ++...+++++|+.
T Consensus 114 kvavvllaGGlGTRLG~~~pK~~lpv~~~s~ks~lql~~e~i~~~~g~~iPl~IMTS~~T~~~T~~~~~~fgl 186 (630)
T 3ogz_A 114 KTVFVLVAGGLGERLGYSSIKVSLPVETATNTTYLAYYLRWAQRVGGKEVPFVIMTSDDTHDRTLQLLRELQL 186 (630)
T ss_dssp GEEEEEECCCEEGGGTEEEEGGGSBSCTTTCCBHHHHHHHHHHHHHCTTCCEEEEECTTTHHHHHHHHHHTTC
T ss_pred hceEEEecCCcccccCCCCCcccceecCCCCCcHHHHHHHHHHHHhCCCCcEEEEecccchHHHHHHHHHhCC
Confidence 7889999999999998 59999996 999999999999853221 24555553 5777788877764
No 63
>3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A
Probab=96.74 E-value=0.0013 Score=60.33 Aligned_cols=63 Identities=14% Similarity=0.172 Sum_probs=47.7
Q ss_pred CCCCcEEEEEecCCCCCCCC---CccccccC-CeehHHHHHHHHHcC----C-CCCeEEEEcC---cHHHHHHHHH
Q 028257 45 NFRSRVVGIIPARFASSRFE---GKPLVNIL-GKPMIQRTWERSKLA----T-TLDHLVVATD---DEKIAECCQQ 108 (211)
Q Consensus 45 ~~~m~i~aIIlA~G~ssRlg---~K~ll~l~-GkpLl~~~i~~l~~~----~-~id~IVVvt~---~e~i~~~~~~ 108 (211)
....++.+|+||||.|+||| +|.++++. |+++++..+++++.. + .+ .++|.|+ ++...+++++
T Consensus 123 ~~l~kvavvlLaGGlGTRLG~~~PK~~i~V~sgktflql~~eqI~~l~~~~g~~I-Pl~IMTS~~T~~~T~~~f~k 197 (528)
T 3r3i_A 123 SVLNKLVVVKLNGGLGTSMGCKGPKSLIGVRNENTFLDLTVQQIEHLNKTYNTDV-PLVLMNSFNTDEDTKKILQK 197 (528)
T ss_dssp TTCTTEEEEEECCCBCTTTTCSSBGGGSEEETTEEHHHHHHHHHHHHHHHHTCCC-CEEEEECTTTHHHHHSSCGG
T ss_pred hhcCceEEEEeCCCCccccCCCCCccceecCCCCcHHHHHHHHHHHHHHHhCCCC-CEEEEeccchhHHHHHHHHh
Confidence 45568999999999999997 59999995 999999999999864 2 24 4455553 4556665554
No 64
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=96.64 E-value=0.018 Score=55.32 Aligned_cols=105 Identities=18% Similarity=0.267 Sum_probs=72.3
Q ss_pred CcEEEEEecCCCCCCCCCccccccCCe-ehHHHHHHHHHcCCCCC---eEEEEcCc---------------------HHH
Q 028257 48 SRVVGIIPARFASSRFEGKPLVNILGK-PMIQRTWERSKLATTLD---HLVVATDD---------------------EKI 102 (211)
Q Consensus 48 m~i~aIIlA~G~ssRlg~K~ll~l~Gk-pLl~~~i~~l~~~~~id---~IVVvt~~---------------------e~i 102 (211)
+++.++||+- ++. .+++.+++.+.+...-+ +|+|+.|. +.+
T Consensus 140 P~VSViIPty--------------Ne~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~~d~~i~~~~~~~~~~l 205 (802)
T 4hg6_A 140 PTVDILVPSY--------------NEPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMSPDPELAQKAQERRREL 205 (802)
T ss_dssp CCEEEEEECT--------------TCCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred CcEEEEEEEC--------------CCCHHHHHHHHHHHHhccCCCCcEEEEEEECCCCccccccCCHHHHHHHHhhhHHH
Confidence 3567777773 223 46688999997654332 57777752 123
Q ss_pred HHHHHHcCCeEeeCCcccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCe
Q 028257 103 AECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDA 169 (211)
Q Consensus 103 ~~~~~~~~v~vi~~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~ 169 (211)
+++++++++.++..++...|....+..|++.. +.|+++++|+|. .++++.++++++.+.++++.
T Consensus 206 ~~~~~~~~v~~i~~~~~~~GKa~alN~gl~~a--~gd~Il~lDaD~-~~~pd~L~~lv~~~~~dp~v 269 (802)
T 4hg6_A 206 QQLCRELGVVYSTRERNEHAKAGNMSAALERL--KGELVVVFDADH-VPSRDFLARTVGYFVEDPDL 269 (802)
T ss_dssp HHHHHHHTCEEEECSSCCSHHHHHHHHHHHHC--CCSEEEECCTTE-EECTTHHHHHHHHHHHSSSC
T ss_pred HHHHHhcCcEEEEecCCCCcchHHHHHHHHhc--CCCEEEEECCCC-CcChHHHHHHHHHHhcCCCe
Confidence 44456678877766544333345677888887 589999999999 67999999999999655553
No 65
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=96.53 E-value=0.019 Score=51.12 Aligned_cols=109 Identities=7% Similarity=0.046 Sum_probs=73.2
Q ss_pred CCCcEEEEEecCCCCCCCCCccccccCCe-ehHHHHHHHHHcCCCC---CeEEEEcC---cHH----HHHHHHHcC--Ce
Q 028257 46 FRSRVVGIIPARFASSRFEGKPLVNILGK-PMIQRTWERSKLATTL---DHLVVATD---DEK----IAECCQQFG--AD 112 (211)
Q Consensus 46 ~~m~i~aIIlA~G~ssRlg~K~ll~l~Gk-pLl~~~i~~l~~~~~i---d~IVVvt~---~e~----i~~~~~~~~--v~ 112 (211)
.+|++.+||++- +.. ..|..+++.+.+...- .+|+|+-| +++ +++++++++ +.
T Consensus 27 ~~p~vSVIIp~y--------------N~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~~~~~~~~~v~ 92 (472)
T 1xhb_A 27 NLPTTSVVIVFH--------------NEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVKKLKVPVH 92 (472)
T ss_dssp CCCCEEEEEEES--------------SCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSSSSCEE
T ss_pred CCCCeEEEEEeC--------------CCCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHHHHHHHHCCCcEE
Confidence 456788888874 334 6778888888764322 27777754 222 334444444 45
Q ss_pred EeeCCcccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEE
Q 028257 113 VIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFS 172 (211)
Q Consensus 113 vi~~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~ 172 (211)
++..++. .|...+...|++.. ..|+++++++|. .++++.+..+++.+.++++.+++
T Consensus 93 vi~~~~n-~G~~~a~N~g~~~A--~gd~i~flD~D~-~~~p~~L~~ll~~~~~~~~~~v~ 148 (472)
T 1xhb_A 93 VIRMEQR-SGLIRARLKGAAVS--RGQVITFLDAHC-ECTAGWLEPLLARIKHDRRTVVC 148 (472)
T ss_dssp EEECSSC-CCHHHHHHHHHHHC--CSSEEEEEESSE-EECTTCHHHHHHHHHHCTTEEEE
T ss_pred EEECCCC-CChHHHHHHHHHhc--cCCeEEEECCCe-EeCccHHHHHHHHHHhCCCEEEE
Confidence 5544322 35455677788877 579999999998 58999999999999877666554
No 66
>3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei}
Probab=96.39 E-value=0.0041 Score=56.48 Aligned_cols=59 Identities=8% Similarity=0.080 Sum_probs=45.6
Q ss_pred cEEEEEecCCCCCCCC---Ccccccc-CCeehHHHHHHHHHcCC-----CCCeEEEEcC---cHHHHHHHHH
Q 028257 49 RVVGIIPARFASSRFE---GKPLVNI-LGKPMIQRTWERSKLAT-----TLDHLVVATD---DEKIAECCQQ 108 (211)
Q Consensus 49 ~i~aIIlA~G~ssRlg---~K~ll~l-~GkpLl~~~i~~l~~~~-----~id~IVVvt~---~e~i~~~~~~ 108 (211)
++.+|+||||.|+||| +|.++++ .|+++++..+++++... .+ .++|.|+ ++...+++++
T Consensus 76 kvavvlLaGGlGTRLG~~~pKg~~~v~sgksflql~~eqI~~l~~~~~~~i-Pl~IMTS~~T~~~T~~~~~k 146 (484)
T 3gue_A 76 QAVVLKLNGGLGTGMGLNGPKSLLQVKNGQTFLDFTALQLEHFRQVRNCNV-PFMLMNSFSTSGETKNFLRK 146 (484)
T ss_dssp TEEEEEEECCCCGGGTCSSCGGGSEEETTEEHHHHHHHHHHHHHHHHTCCC-CEEEEECTTTHHHHHHHGGG
T ss_pred hcEEEEEcCCcccccCCCCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCc-eEEEECCcchhHHHHHHHHh
Confidence 7889999999999997 5999999 79999999999887521 23 4556553 4666666653
No 67
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=96.09 E-value=0.043 Score=48.27 Aligned_cols=111 Identities=18% Similarity=0.254 Sum_probs=72.9
Q ss_pred CCcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHH----cCCCCCeEEEEcC--cHHHHHHHHHcCCeEeeCC---
Q 028257 47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSK----LATTLDHLVVATD--DEKIAECCQQFGADVIMTS--- 117 (211)
Q Consensus 47 ~m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~----~~~~id~IVVvt~--~e~i~~~~~~~~v~vi~~~--- 117 (211)
.+++.+|||+-.. ...|..+++.+. +.+...+|+|+-| .+...+++++++.+++...
T Consensus 93 ~p~vSVVIP~yNe--------------~~~l~~~l~sl~~~l~~~~~~~EIIVVDDgStD~T~~i~~~~~~~v~~~~~~~ 158 (387)
T 3f1y_A 93 GLTVSAVLPSRNV--------------ADTVGGIIDEIHALNERAPLIDQILVVDADSEDGTAGVAASHGAEVYSENELM 158 (387)
T ss_dssp TCCEEEEEEESSC--------------TTTHHHHHHHHHHHHHHSCCCSEEEEEECSCSSSHHHHHHHTTCEEEEGGGTT
T ss_pred CCeEEEEEEcCCC--------------HHHHHHHHHHHHHHHhcCCCCeEEEEEcCcCCccHHHHHHHhCchhcccceeE
Confidence 5789999998533 344455555553 3333457877765 3556677777777654321
Q ss_pred ---cccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhC--CCeEEEE
Q 028257 118 ---ESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA--PDAVFST 173 (211)
Q Consensus 118 ---~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~--~d~vv~v 173 (211)
+.-.|...++..|++.. ..|+++++++|.-..+++.+..+++.+.++ .+.+++.
T Consensus 159 i~~~~n~G~g~A~n~G~~~A--~gd~i~~lDaD~~~~~p~~L~~l~~~l~~~p~~d~v~G~ 217 (387)
T 3f1y_A 159 SGYGDAHGKGDAMWRALSVT--RGDLVLYIDADTRDFRPQLAYGVLGPVLEVPGVRFVKAA 217 (387)
T ss_dssp GGGCSCCSHHHHHHHHTTTC--CSSEEEECCTTCSSCCTHHHHTTHHHHHHSTTCCEEEEE
T ss_pred ecCCccCCHHHHHHHHHHhc--CCCEEEEEcCCCCcCCHHHHHHHHHHHHHCCCceEEEEe
Confidence 11224345677788776 579999999999448999999999998654 4555553
No 68
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=96.06 E-value=0.039 Score=49.56 Aligned_cols=109 Identities=7% Similarity=0.017 Sum_probs=70.9
Q ss_pred CCCcEEEEEecCCCCCCCCCccccccCCee-hHHHHHHHHHcCCCCC---eEEEEcC---cHHHHHHHHHc-CCeEeeCC
Q 028257 46 FRSRVVGIIPARFASSRFEGKPLVNILGKP-MIQRTWERSKLATTLD---HLVVATD---DEKIAECCQQF-GADVIMTS 117 (211)
Q Consensus 46 ~~m~i~aIIlA~G~ssRlg~K~ll~l~Gkp-Ll~~~i~~l~~~~~id---~IVVvt~---~e~i~~~~~~~-~v~vi~~~ 117 (211)
.+|++.+||++- +... .|..+|+.+.+...-. +|||+-| ++.+....++. .+.++..+
T Consensus 64 ~~p~vSVIIp~y--------------N~~~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t~~~~~~~~~~v~vi~~~ 129 (501)
T 2ffu_A 64 DLPATSVVITFH--------------NEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALLGKIEKVRVLRND 129 (501)
T ss_dssp SCCCEEEEEEES--------------SCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHHHHGGGGBTTEEEEECS
T ss_pred CCCCEEEEEEeC--------------cCcHHHHHHHHHHHHhhCchhhceeEEEEECCCCchHHHHHHhcCCCEEEEECC
Confidence 356788888874 2222 7788888876542222 7777754 33333333333 34544433
Q ss_pred cccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEE
Q 028257 118 ESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFS 172 (211)
Q Consensus 118 ~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~ 172 (211)
+ -.|...+...|++.. ..|+++++++|. .++++.+..+++.+.++++.+++
T Consensus 130 ~-n~G~~~A~N~G~~~A--~gd~i~flD~D~-~~~p~~L~~ll~~~~~~~~~vv~ 180 (501)
T 2ffu_A 130 R-REGLMRSRVRGADAA--QAKVLTFLDSHC-ECNEHWLEPLLERVAEDRTRVVS 180 (501)
T ss_dssp S-CCHHHHHHHHHHHHC--CSSEEEECCSSE-EECTTCHHHHHHHHHHCTTEEEE
T ss_pred C-CcCHHHHHHHHHHhc--CCCEEEEECCCc-ccCccHHHHHHHHHHhCCCeEEE
Confidence 2 234445677788877 579999999999 57899999999999876665544
No 69
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=95.86 E-value=0.034 Score=51.14 Aligned_cols=108 Identities=10% Similarity=0.093 Sum_probs=70.3
Q ss_pred CCcEEEEEecCCCCCCCCCccccccCCe-ehHHHHHHHHHcCCCCC---eEEEEcC---cHH----HHHHHHHc-CCeEe
Q 028257 47 RSRVVGIIPARFASSRFEGKPLVNILGK-PMIQRTWERSKLATTLD---HLVVATD---DEK----IAECCQQF-GADVI 114 (211)
Q Consensus 47 ~m~i~aIIlA~G~ssRlg~K~ll~l~Gk-pLl~~~i~~l~~~~~id---~IVVvt~---~e~----i~~~~~~~-~v~vi 114 (211)
++++.+||++- +.. ..|..+|+.+.+...-+ +|||+-| ++. ++++++++ .+.++
T Consensus 111 ~P~vSVIIp~y--------------Ne~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l~~~~~~~~~v~vi 176 (570)
T 2d7i_A 111 LPNTSIIIPFH--------------NEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLEDYMALFPSVRIL 176 (570)
T ss_dssp CCCEEEEEEES--------------SCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHHHHHTTSTTEEEE
T ss_pred CCCeEEEEEEC--------------CCCHHHHHHHHHHHHhcCCccCcEEEEEEECCCCcHHHHHHHHHHHHhCCeEEEE
Confidence 45677777774 333 57778888876543222 6777754 222 23333333 34555
Q ss_pred eCCcccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEE
Q 028257 115 MTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFS 172 (211)
Q Consensus 115 ~~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~ 172 (211)
..++ -.|...+...|++.. +.|+++++++|. .++++.+..+++.+.++++.+++
T Consensus 177 ~~~~-n~G~~~A~N~G~~~A--~gd~i~fLD~D~-~~~p~~L~~ll~~l~~~~~~vv~ 230 (570)
T 2d7i_A 177 RTKK-REGLIRTRMLGASVA--TGDVITFLDSHC-EANVNWLPPLLDRIARNRKTIVC 230 (570)
T ss_dssp ECSS-CCCHHHHHHHHHHHC--CSSEEEECCSSE-EECTTCSHHHHHHHHHCTTEEEE
T ss_pred ECCC-CCCHHHHHHHHHHhc--CCCEEEEEcCCc-cccccHHHHHHHHHHhCCCEEEe
Confidence 4432 234455677788877 579999999999 56999999999999877776654
No 70
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=95.84 E-value=0.052 Score=49.94 Aligned_cols=108 Identities=18% Similarity=0.168 Sum_probs=70.7
Q ss_pred CCcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCC--CCeEEEEcC--cHHHHHHHHHc----CCeEeeCCc
Q 028257 47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATT--LDHLVVATD--DEKIAECCQQF----GADVIMTSE 118 (211)
Q Consensus 47 ~m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~--id~IVVvt~--~e~i~~~~~~~----~v~vi~~~~ 118 (211)
++++.+||++- +....|..+++.+..... -.+|+|+-| .+...++++++ ++.++..+.
T Consensus 92 ~p~vsviIp~~--------------n~~~~l~~~l~sl~~q~~~~~~eiivvDd~s~d~t~~~~~~~~~~~~i~~i~~~~ 157 (625)
T 2z86_A 92 IDGLSIVIPTY--------------NRAKILAITLACLCNQKTIYDYEVIVADDGSKENIEEIVREFESLLNIKYVRQKD 157 (625)
T ss_dssp CCCEEEEEEES--------------SCHHHHHHHHHHHHTCCCSSCEEEEEEEESCSSCHHHHHHTTTTTSCEEEEEECC
T ss_pred CCcEEEEEecC--------------CcHHHHHHHHHHHHhhccCCCeEEEEEeCCCchhHHHHHHHhhhcCCeEEEEeCC
Confidence 45788888874 334678888999886521 236666653 34455555554 344444332
Q ss_pred ccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEE
Q 028257 119 SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171 (211)
Q Consensus 119 ~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv 171 (211)
.-.|...+...|++.. +.|+++++++|. .++++.+..+++.+.++++..+
T Consensus 158 ~~~g~~~a~N~g~~~a--~g~~v~~lD~D~-~~~~~~l~~~~~~~~~~~~~~~ 207 (625)
T 2z86_A 158 YGYQLCAVRNLGLRAA--KYNYVAILDCDM-APNPLWVQSYMELLAVDDNVAL 207 (625)
T ss_dssp CSCCHHHHHHHHHHHC--CSSEEEEECTTE-EECTTHHHHHHHHHHHCTTEEE
T ss_pred CCcchhHHHHHHHHhC--CcCEEEEECCCC-CCCHHHHHHHHHHHhcCCceEE
Confidence 2112335566788877 579999999999 5699999999999976555443
No 71
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=95.35 E-value=0.13 Score=47.30 Aligned_cols=93 Identities=14% Similarity=0.175 Sum_probs=59.7
Q ss_pred CCeehHHHHHHHHHcCCCCC-eEEEEcC--cHHHHHHHHH----c-CCeEeeCCcccCCChHHHHHHHHhhccCCCEEEE
Q 028257 72 LGKPMIQRTWERSKLATTLD-HLVVATD--DEKIAECCQQ----F-GADVIMTSESCRNGTERCNEALQKLEKKYDIVVN 143 (211)
Q Consensus 72 ~GkpLl~~~i~~l~~~~~id-~IVVvt~--~e~i~~~~~~----~-~v~vi~~~~~~~g~~~si~~al~~l~~~~d~vlv 143 (211)
++...|..+|+.+.+....+ +|+|+-| .+...+++++ . .+.++. +.-.|...+...|++.. ..|++++
T Consensus 385 n~~~~l~~~l~s~~~q~~~~~eiivvdd~S~d~t~~~~~~~~~~~~~i~~~~--~~n~G~~~a~n~g~~~a--~g~~i~~ 460 (625)
T 2z86_A 385 NCSKYIVRCVESALNQTITDLEVCICDDGSTDDTLRILQEHYANHPRVRFIS--QKNKGIGSASNTAVRLC--RGFYIGQ 460 (625)
T ss_dssp SCTTTHHHHHHHHHSSSCCSEEEEEEEESCSSSHHHHHHHHHTTCTTEEEEE--ECCCCHHHHHHHHHHHC--CSSEEEE
T ss_pred CCHHHHHHHHHHHHhCcCCCeEEEEEECcCChhHHHHHHHHHhhCCcEEEEe--CCCCCHHHHHHHHHHhc--CCCEEEE
Confidence 44567888888887643323 5666543 2223333332 2 234442 22234456677888877 5799999
Q ss_pred EcCCCcCCCHHHHHHHHHHHHhCCCe
Q 028257 144 IQGDEPLIEPEIIDGVVKALQAAPDA 169 (211)
Q Consensus 144 ~~~D~Pli~~~~i~~li~~~~~~~d~ 169 (211)
+++|. .+.++.+..+++.+.++++.
T Consensus 461 ld~D~-~~~~~~l~~~~~~~~~~~~~ 485 (625)
T 2z86_A 461 LDSDD-FLEPDAVELCLDEFRKDLSL 485 (625)
T ss_dssp CCTTC-EECTTHHHHHHHHHHHCTTC
T ss_pred ECCCc-ccChhHHHHHHHHHHhCCCe
Confidence 99998 67999999999988665544
No 72
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=95.33 E-value=0.052 Score=51.06 Aligned_cols=103 Identities=9% Similarity=0.097 Sum_probs=64.9
Q ss_pred cCCeehHHHHHHHHHcCC----CCCeEEEEcCc-------HHHHHHHHHc--CCeEeeCCcccCCChHHHHHHHHhhcc-
Q 028257 71 ILGKPMIQRTWERSKLAT----TLDHLVVATDD-------EKIAECCQQF--GADVIMTSESCRNGTERCNEALQKLEK- 136 (211)
Q Consensus 71 l~GkpLl~~~i~~l~~~~----~id~IVVvt~~-------e~i~~~~~~~--~v~vi~~~~~~~g~~~si~~al~~l~~- 136 (211)
+++...|...|+.+.+.. ...+|||+-|. +.+.++++.. .+.++..+ -.|...+...|++.+..
T Consensus 189 YN~~~~L~~~L~SL~~qt~~~~~~~EIIVVDNgStD~s~~~~~~e~~~~~~~~I~vI~~~--N~G~a~a~N~Gl~~A~g~ 266 (657)
T 4fix_A 189 FNRPADCVNALRELTADPLVDQVIGAVIVPDQGERKVRDHPDFPAAAARLGSRLSIHDQP--NLGGSGGYSRVMYEALKN 266 (657)
T ss_dssp SSCHHHHHHHHHHHTTSHHHHTTEEEEEEEECSSSCGGGSTTHHHHHHHHGGGEEEEECC--CCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCccccCCCCEEEEEECcCCCccchHHHHHHHHhcCCCEEEEECC--CCCHHHHHHHHHHHHHhc
Confidence 466678888898887642 23467776541 1344444433 34444432 23444556667776532
Q ss_pred -CCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCC-eEEEEeee
Q 028257 137 -KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD-AVFSTAVT 176 (211)
Q Consensus 137 -~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d-~vv~v~~~ 176 (211)
+.|++++++.|. .+.++.+..+++.+..+++ .+++....
T Consensus 267 ~~~dyIlfLD~D~-~~~pd~L~~ll~~l~~~~~~~~vg~~il 307 (657)
T 4fix_A 267 TDCQQILFMDDDI-RLEPDSILRVLAMHRFAKAPMLVGGQML 307 (657)
T ss_dssp CCCSEEEEECSSE-EECTHHHHHHHHHHHHBSSCCEEEEEEE
T ss_pred CCCCEEEEECCCC-ccChhHHHHHHHHHHhCCCcEEEEeEEe
Confidence 478999999999 7889999999999976544 34443333
No 73
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*
Probab=94.33 E-value=0.34 Score=42.78 Aligned_cols=51 Identities=16% Similarity=0.130 Sum_probs=40.2
Q ss_pred CCChHHHHHHH----HhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEE
Q 028257 121 RNGTERCNEAL----QKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFST 173 (211)
Q Consensus 121 ~g~~~si~~al----~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v 173 (211)
.|...++..|+ +.. +.|+++++++|.--.+++.+.++++.+.++.|.+++.
T Consensus 74 ~GkG~Al~~G~~~Al~~a--~gd~vv~mDADlq~~~P~~i~~Ll~~l~~g~D~V~g~ 128 (397)
T 2bo4_A 74 PGKGDGMNTALRYFLEET--QWERIHFYDADITSFGPDWITKAEEAADFGYGLVRHY 128 (397)
T ss_dssp SSHHHHHHHHHHHHHHHC--CCSEEEECCTTCSSCCHHHHHHHHHHHHTTCSEEEEE
T ss_pred CCHHHHHHHHHHHHHHhC--CCCEEEEEcCCCCCCCHHHHHHHHHHHHcCCCEEEEE
Confidence 45567788888 554 5799999999974468999999999887667877764
No 74
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=89.86 E-value=0.06 Score=50.80 Aligned_cols=107 Identities=14% Similarity=0.161 Sum_probs=0.0
Q ss_pred CCcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCC-CCeEEEEcC--cHHHHHHH----HHcC--CeEeeCC
Q 028257 47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATT-LDHLVVATD--DEKIAECC----QQFG--ADVIMTS 117 (211)
Q Consensus 47 ~m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~-id~IVVvt~--~e~i~~~~----~~~~--v~vi~~~ 117 (211)
||++++|||+-. +...|..+|+.+.+... --+|+|+-| .+...+++ ++++ +.++..+
T Consensus 1 Mp~vSVIIp~yN--------------~~~~L~~~L~Sll~Qt~~~~EIIVVDDgStD~t~~il~~~~~~~~~~i~~i~~~ 66 (729)
T 3l7i_A 1 MNKLTIIVTYYN--------------AEEYITGCLESIKQQRTQDFNLIIVNDGSTDQSKKLMDEAIKDYDKNIRFIDLD 66 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceEEEEEEcCC--------------CHHHHHHHHHHHHhCCCCCeEEEEEECCCCCcHHHHHHHHHHhCCCCEEEEECC
Confidence 456777777643 33445555555543321 114555543 23333333 3323 4444332
Q ss_pred cccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEE
Q 028257 118 ESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFS 172 (211)
Q Consensus 118 ~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~ 172 (211)
+ -.|...+...|++.. +.++++++++|. .+.++.++.+++.+. +.+.+++
T Consensus 67 ~-n~G~~~arN~gi~~A--~gdyI~flD~Dd-~~~p~~l~~l~~~l~-~~d~v~~ 116 (729)
T 3l7i_A 67 E-NSGHAHARNIALEEV--ETPYFMFLDADD-ELASYAITFYLEKFN-NTDGLIA 116 (729)
T ss_dssp -------------------------------------------------------
T ss_pred C-CCCHHHHHHHHHHhc--cCCEEEEECCCC-CCChhHHHHHHHHhc-CCCEEEE
Confidence 2 234445566778776 478999999999 568999999999887 4555544
No 75
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=74.44 E-value=13 Score=31.94 Aligned_cols=103 Identities=14% Similarity=0.215 Sum_probs=60.9
Q ss_pred CCeehHHHHHHHHHcCCC-C--CeEEEEcC--cHHHHHHHHHcCCe--EeeCCcc------cC-CCh-------HHHHHH
Q 028257 72 LGKPMIQRTWERSKLATT-L--DHLVVATD--DEKIAECCQQFGAD--VIMTSES------CR-NGT-------ERCNEA 130 (211)
Q Consensus 72 ~GkpLl~~~i~~l~~~~~-i--d~IVVvt~--~e~i~~~~~~~~v~--vi~~~~~------~~-g~~-------~si~~a 130 (211)
.++|=+.++++.+.+... . ..|+|+-+ .++..++++.++.+ .+..++. .. .+. ..+..|
T Consensus 11 yNRp~l~~~L~sL~~~~p~~~~~~iivsdDgs~~~~~~vi~~~~~~I~~~~~~d~~~~~~~~~N~g~~~y~~ia~h~~~a 90 (343)
T 1fo8_A 11 CDRSTVRRCLDKLLHYRPSAELFPIIVSQDCGHEETAQVIASYGSAVTHIRQPDLSNIAVQPDHRKFQGYYKIARHYRWA 90 (343)
T ss_dssp SSCTTHHHHHHHHHHHCSCTTTSCEEEEECTTCHHHHHHHHTTGGGSEEEECSCCCCCCCCTTCGGGHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcCCCcCCcEEEEEECCCCHHHHHHHHHcCCceEEEEcCCccccccchhhcCcccchhHhHHHHHH
Confidence 344447888888887532 2 25666554 46777887776432 2211110 00 121 234456
Q ss_pred HHhhcc--CCCEEEEEcCCCcCCCHHHHHHHHHHHH--hCCCeEEEEee
Q 028257 131 LQKLEK--KYDIVVNIQGDEPLIEPEIIDGVVKALQ--AAPDAVFSTAV 175 (211)
Q Consensus 131 l~~l~~--~~d~vlv~~~D~Pli~~~~i~~li~~~~--~~~d~vv~v~~ 175 (211)
+..+-. ..+.++++..|+ .++++.++-+.+.+. ++.+.+.++..
T Consensus 91 l~~vf~~~~~~~vIiLEDDl-~~spdF~~y~~~~l~~y~~D~~I~~ISa 138 (343)
T 1fo8_A 91 LGQIFHNFNYPAAVVVEDDL-EVAPDFFEYFQATYPLLKADPSLWCVSA 138 (343)
T ss_dssp HHHHHTTSCCSEEEEEETTE-EECTTHHHHHHHHHHHHHHCTTEEEEES
T ss_pred HHHHHHhccCCEEEEEcCCC-eECHHHHHHHHHHHHHhhcCCcEEEEec
Confidence 665432 578999999999 889999877766653 33455666553
No 76
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=71.17 E-value=27 Score=29.07 Aligned_cols=91 Identities=9% Similarity=0.139 Sum_probs=54.5
Q ss_pred EEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCC-CCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCCCh---HHH
Q 028257 52 GIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLAT-TLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGT---ERC 127 (211)
Q Consensus 52 aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~-~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g~~---~si 127 (211)
.+|++-|.|+ -++..+++.+.-. ..+-..|++|++....+++++|++++..+....... ..+
T Consensus 93 i~vl~Sg~g~--------------~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~A~~~gIp~~~~~~~~~~r~~~~~~~ 158 (286)
T 3n0v_A 93 VVIMVSKADH--------------CLNDLLYRQRIGQLGMDVVAVVSNHPDLEPLAHWHKIPYYHFALDPKDKPGQERKV 158 (286)
T ss_dssp EEEEESSCCH--------------HHHHHHHHHHTTSSCCEEEEEEESSSTTHHHHHHTTCCEEECCCBTTBHHHHHHHH
T ss_pred EEEEEeCCCC--------------CHHHHHHHHHCCCCCcEEEEEEeCcHHHHHHHHHcCCCEEEeCCCcCCHHHHHHHH
Confidence 5667766653 4566666665421 133344667777777788899999876443221111 234
Q ss_pred HHHHHhhccCCCEEEEEcCCCcCCCHHHHHHH
Q 028257 128 NEALQKLEKKYDIVVNIQGDEPLIEPEIIDGV 159 (211)
Q Consensus 128 ~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~l 159 (211)
...++.. +.| ++++.+-+-.++++.++..
T Consensus 159 ~~~l~~~--~~D-livla~y~~il~~~~l~~~ 187 (286)
T 3n0v_A 159 LQVIEET--GAE-LVILARYMQVLSPELCRRL 187 (286)
T ss_dssp HHHHHHH--TCS-EEEESSCCSCCCHHHHHHT
T ss_pred HHHHHhc--CCC-EEEecccccccCHHHHhhh
Confidence 4555554 234 5677777778888887754
No 77
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=69.84 E-value=32 Score=28.75 Aligned_cols=91 Identities=11% Similarity=0.104 Sum_probs=54.6
Q ss_pred EEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCC-CCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCCCh---HHH
Q 028257 52 GIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLAT-TLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGT---ERC 127 (211)
Q Consensus 52 aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~-~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g~~---~si 127 (211)
..|++-|.|+ -++..+++.+.-. ..+-..|++|++....+++++|++++..+....+.. ..+
T Consensus 98 i~vl~Sg~g~--------------~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~A~~~gIp~~~~~~~~~~r~~~~~~~ 163 (292)
T 3lou_A 98 VLIMVSKLEH--------------CLADLLFRWKMGELKMDIVGIVSNHPDFAPLAAQHGLPFRHFPITADTKAQQEAQW 163 (292)
T ss_dssp EEEEECSCCH--------------HHHHHHHHHHHTSSCCEEEEEEESSSTTHHHHHHTTCCEEECCCCSSCHHHHHHHH
T ss_pred EEEEEcCCCc--------------CHHHHHHHHHcCCCCcEEEEEEeCcHHHHHHHHHcCCCEEEeCCCcCCHHHHHHHH
Confidence 5677766654 3555666665422 133345667777777788999999876443221211 234
Q ss_pred HHHHHhhccCCCEEEEEcCCCcCCCHHHHHHH
Q 028257 128 NEALQKLEKKYDIVVNIQGDEPLIEPEIIDGV 159 (211)
Q Consensus 128 ~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~l 159 (211)
...++.. +.| ++++.+=+-.++++.++..
T Consensus 164 ~~~l~~~--~~D-livla~y~~il~~~~l~~~ 192 (292)
T 3lou_A 164 LDVFETS--GAE-LVILARYMQVLSPEASARL 192 (292)
T ss_dssp HHHHHHH--TCS-EEEESSCCSCCCHHHHHHT
T ss_pred HHHHHHh--CCC-EEEecCchhhCCHHHHhhh
Confidence 4555554 234 5677777778888887764
No 78
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=65.87 E-value=3.9 Score=24.61 Aligned_cols=38 Identities=24% Similarity=0.353 Sum_probs=22.3
Q ss_pred CCCCCCCCCchhHHHHHHhhcchhh--hhhceeehcccCCCCC
Q 028257 7 CSPSESSSSTKSWIVHGIVAGAAIA--VAVGARAYLGRSKNFR 47 (211)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 47 (211)
|... ++| +-. |..+.|.|+.+- ++++..+|.+|++...
T Consensus 2 ~~~~-~s~-~~a-IA~gVVgGv~~v~ii~~~~~~~~RRRr~~~ 41 (44)
T 2l2t_A 2 TLPQ-HAR-TPL-IAAGVIGGLFILVIVGLTFAVYVRRKSIKK 41 (44)
T ss_dssp CCCS-SCS-SHH-HHHHHHHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred CcCC-CCC-cce-EEEeehHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 5552 333 333 888888888874 4444445556665543
No 79
>1omz_A Alpha-1,4-N-acetylhexosaminyltransferase EXTL2; rossmann fold, DXD motif; HET: UD2; 2.10A {Mus musculus} SCOP: c.68.1.15 PDB: 1omx_A* 1on6_A* 1on8_A*
Probab=65.34 E-value=7.8 Score=32.70 Aligned_cols=113 Identities=14% Similarity=0.181 Sum_probs=72.5
Q ss_pred CCCcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHH---HHHHHHHc---CCeEeeCCcc
Q 028257 46 FRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEK---IAECCQQF---GADVIMTSES 119 (211)
Q Consensus 46 ~~m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~---i~~~~~~~---~v~vi~~~~~ 119 (211)
+..+.++||.+-- | ..+|...++.+.+++.+++|+|+=+++. -....... .+.+.+....
T Consensus 26 ~~~~FTvvi~ty~---R-----------~~~L~~lv~~~~~~~~v~~IvVvWn~~~~~pp~~~~~~~~~~~vpv~v~~~~ 91 (293)
T 1omz_A 26 ALDSFTLIMQTYN---R-----------TDLLLRLLNHYQAVPSLHKVIVVWNNVGEKGPEELWNSLGPHPIPVIFKPQT 91 (293)
T ss_dssp CTTCEEEEEEESS---C-----------HHHHHHHHHHHTTSTTEEEEEEEECCTTCCCTHHHHHHTCCCSSCEEEEECS
T ss_pred CCCceEEEEEeec---c-----------cHHHHHHHHHHhcCCCCCeEEEEeCCCCCCCChhhccccCCCCccEEEEeCC
Confidence 3456778887642 2 3678888999999999999998865321 01111232 3454332211
Q ss_pred cCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHhCCCeEEEEeee
Q 028257 120 CRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVT 176 (211)
Q Consensus 120 ~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~vv~v~~~ 176 (211)
......++. -...+ ++|.||.++-|. .++.+.|+...+.+++++|.+++....
T Consensus 92 ~nsLnnRF~-p~~~i--~T~AVLslDDDv-~l~~~el~faF~vWr~~PdRlVGf~~R 144 (293)
T 1omz_A 92 ANKMRNRLQ-VFPEV--ETNAVLMVDDDT-LISAQDLVFAFSIWQQFPDQIIGFVPR 144 (293)
T ss_dssp SCCGGGGGS-CCTTC--CSSEEEEECTTE-EECHHHHHHHHHHHTTSTTSEEESCEE
T ss_pred CCchhhccC-CCccC--CcCEEEEEcCCC-CCCHHHHHHHHHHHHHCccceecCchh
Confidence 111112221 01112 578999999998 899999999999999999999998763
No 80
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=62.71 E-value=55 Score=25.86 Aligned_cols=95 Identities=15% Similarity=0.098 Sum_probs=53.3
Q ss_pred CCcEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCC-eE-EEEcCcH--HHHHHHHHcCCeEeeCCc-ccC
Q 028257 47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLD-HL-VVATDDE--KIAECCQQFGADVIMTSE-SCR 121 (211)
Q Consensus 47 ~m~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id-~I-VVvt~~e--~i~~~~~~~~v~vi~~~~-~~~ 121 (211)
|++....|++-|.|+ .++..++++.+. .+. +| .|+++.+ .-.+.++++|++++..+. .+.
T Consensus 5 m~~~ri~vl~SG~gs--------------nl~all~~~~~~-~l~~~I~~Visn~~~a~~l~~A~~~gIp~~~~~~~~~~ 69 (209)
T 4ds3_A 5 MKRNRVVIFISGGGS--------------NMEALIRAAQAP-GFPAEIVAVFSDKAEAGGLAKAEAAGIATQVFKRKDFA 69 (209)
T ss_dssp -CCEEEEEEESSCCH--------------HHHHHHHHHTST-TCSEEEEEEEESCTTCTHHHHHHHTTCCEEECCGGGSS
T ss_pred CCCccEEEEEECCcH--------------HHHHHHHHHHcC-CCCcEEEEEEECCcccHHHHHHHHcCCCEEEeCccccC
Confidence 445556677766665 466677777653 332 44 4556543 234577888998865432 222
Q ss_pred CCh---HHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHH
Q 028257 122 NGT---ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGV 159 (211)
Q Consensus 122 g~~---~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~l 159 (211)
... ..+...++.. +.| ++++.+-+-.++++.++..
T Consensus 70 ~r~~~d~~~~~~l~~~--~~D-liv~agy~~il~~~~l~~~ 107 (209)
T 4ds3_A 70 SKEAHEDAILAALDVL--KPD-IICLAGYMRLLSGRFIAPY 107 (209)
T ss_dssp SHHHHHHHHHHHHHHH--CCS-EEEESSCCSCCCHHHHGGG
T ss_pred CHHHHHHHHHHHHHhc--CCC-EEEEeccccCcCHHHHhhc
Confidence 211 2345556655 234 4566666667888777653
No 81
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=58.24 E-value=22 Score=28.27 Aligned_cols=39 Identities=21% Similarity=0.148 Sum_probs=31.0
Q ss_pred hHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh
Q 028257 124 TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 165 (211)
Q Consensus 124 ~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~ 165 (211)
..+...|++.. +.|++++++.|. .++++.++.+++.+.+
T Consensus 63 a~a~N~Gi~~A--~g~yl~fln~D~-~~~~~~l~~l~~~~~~ 101 (249)
T 2nxv_A 63 FSWHKQMLPRC--KGRYVIFCHEDV-ELVDRGYDDLVAAIEA 101 (249)
T ss_dssp TTHHHHHGGGC--CSSEEEEEETTE-ECSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CCCEEEEECCCc-ccCccHHHHHHHHHHh
Confidence 34556677766 579999999999 5599999999988865
No 82
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=58.08 E-value=68 Score=25.43 Aligned_cols=94 Identities=14% Similarity=0.105 Sum_probs=48.9
Q ss_pred cEEEEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcH-HHHHHHHHcCCeEeeCCcc-cCCC---
Q 028257 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDE-KIAECCQQFGADVIMTSES-CRNG--- 123 (211)
Q Consensus 49 ~i~aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e-~i~~~~~~~~v~vi~~~~~-~~g~--- 123 (211)
+...+|++-|.|+ .++..++++.+.-..+-+.|+++.+ ...+.++++|++++..+.. +.+.
T Consensus 12 ~~ri~vl~SG~gs--------------nl~all~~~~~~~~~eI~~Vis~~~a~~~~~A~~~gIp~~~~~~~~~~~r~~~ 77 (215)
T 3da8_A 12 PARLVVLASGTGS--------------LLRSLLDAAVGDYPARVVAVGVDRECRAAEIAAEASVPVFTVRLADHPSRDAW 77 (215)
T ss_dssp SEEEEEEESSCCH--------------HHHHHHHHSSTTCSEEEEEEEESSCCHHHHHHHHTTCCEEECCGGGSSSHHHH
T ss_pred CcEEEEEEeCChH--------------HHHHHHHHHhccCCCeEEEEEeCCchHHHHHHHHcCCCEEEeCcccccchhhh
Confidence 3446677766654 4555566553310122234555543 3456778889987654311 1111
Q ss_pred hHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHH
Q 028257 124 TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGV 159 (211)
Q Consensus 124 ~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~l 159 (211)
...+...++.. +.| ++++.+-+-.++++.++..
T Consensus 78 d~~~~~~l~~~--~~D-livlagy~~iL~~~~l~~~ 110 (215)
T 3da8_A 78 DVAITAATAAH--EPD-LVVSAGFMRILGPQFLSRF 110 (215)
T ss_dssp HHHHHHHHHTT--CCS-EEEEEECCSCCCHHHHHHH
T ss_pred hHHHHHHHHhh--CCC-EEEEcCchhhCCHHHHhhc
Confidence 12344455544 244 4555555557888777654
No 83
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=54.72 E-value=55 Score=27.45 Aligned_cols=91 Identities=9% Similarity=0.058 Sum_probs=53.8
Q ss_pred EEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCC-CCCeEEEEcCcHHHHHHHHHcCCeEeeCCcccCCCh---HHH
Q 028257 52 GIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLAT-TLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGT---ERC 127 (211)
Q Consensus 52 aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~-~id~IVVvt~~e~i~~~~~~~~v~vi~~~~~~~g~~---~si 127 (211)
.+|++-|.|+ -++..+++.+.-. ..+-..|++|.+....+++++|++++..+....... ..+
T Consensus 108 i~vl~Sg~g~--------------nl~~ll~~~~~g~l~~~I~~Visn~~~~~~~A~~~gIp~~~~~~~~~~r~~~~~~~ 173 (302)
T 3o1l_A 108 VVLMASRESH--------------CLADLLHRWHSDELDCDIACVISNHQDLRSMVEWHDIPYYHVPVDPKDKEPAFAEV 173 (302)
T ss_dssp EEEEECSCCH--------------HHHHHHHHHHTTCSCSEEEEEEESSSTTHHHHHTTTCCEEECCCCSSCCHHHHHHH
T ss_pred EEEEEeCCch--------------hHHHHHHHHHCCCCCcEEEEEEECcHHHHHHHHHcCCCEEEcCCCcCCHHHHHHHH
Confidence 4667766654 3556666665432 133344667777777888899998866432211211 234
Q ss_pred HHHHHhhccCCCEEEEEcCCCcCCCHHHHHHH
Q 028257 128 NEALQKLEKKYDIVVNIQGDEPLIEPEIIDGV 159 (211)
Q Consensus 128 ~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~l 159 (211)
...++.. +. .++++.+=+-.++++.++..
T Consensus 174 ~~~l~~~--~~-DliVlagym~IL~~~~l~~~ 202 (302)
T 3o1l_A 174 SRLVGHH--QA-DVVVLARYMQILPPQLCREY 202 (302)
T ss_dssp HHHHHHT--TC-SEEEESSCCSCCCTTHHHHT
T ss_pred HHHHHHh--CC-CEEEHhHhhhhcCHHHHhhh
Confidence 5555554 23 35677777778888777654
No 84
>2c0n_A A197; thermophil protein, thermophilic virus, STIV, sulfolobus turreted ICOS virus; 1.86A {Sulfolobus turreted icosahedral virus}
Probab=54.15 E-value=78 Score=25.13 Aligned_cols=37 Identities=16% Similarity=0.182 Sum_probs=29.8
Q ss_pred CCCEEEEEcCC---CcCCCHHHHHHHHHHHHhCCCeEEEEeeee
Q 028257 137 KYDIVVNIQGD---EPLIEPEIIDGVVKALQAAPDAVFSTAVTS 177 (211)
Q Consensus 137 ~~d~vlv~~~D---~Pli~~~~i~~li~~~~~~~d~vv~v~~~~ 177 (211)
+.|+++++++| + -.+++.+-+++ ..+.|.+++....+
T Consensus 53 ~~dhllfIDAD~~~I-~FdPe~V~rLl---~~g~DVV~GsYp~K 92 (203)
T 2c0n_A 53 DYDTLAFLDEDVVPI-EIDFQKVEAKF---NEGYDVVCGYYYLK 92 (203)
T ss_dssp TCCEEEEECTTEEEE-ECCHHHHHHHH---HHTCSEEEEECBCT
T ss_pred CCCEEEEEeCCCCcc-ccCHHHHHHHH---hCCCCEEEEEeecc
Confidence 57999999999 8 67899998888 44678888776554
No 85
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=51.85 E-value=34 Score=28.50 Aligned_cols=90 Identities=6% Similarity=0.010 Sum_probs=53.9
Q ss_pred EEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCCC-eE-EEEcCc-HHHHHHHHHcCCeEeeCCcccCCCh---H
Q 028257 52 GIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLD-HL-VVATDD-EKIAECCQQFGADVIMTSESCRNGT---E 125 (211)
Q Consensus 52 aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~id-~I-VVvt~~-e~i~~~~~~~~v~vi~~~~~~~g~~---~ 125 (211)
..|++-|.|+ -++..+++.+.- .++ +| .|++|. +...+.++++|++++..+....... .
T Consensus 92 i~vl~Sg~g~--------------nl~~ll~~~~~g-~l~~~i~~Visn~p~~~~~~A~~~gIp~~~~~~~~~~r~~~~~ 156 (288)
T 3obi_A 92 VMLLVSQSDH--------------CLADILYRWRVG-DLHMIPTAIVSNHPRETFSGFDFGDIPFYHFPVNKDTRRQQEA 156 (288)
T ss_dssp EEEEECSCCH--------------HHHHHHHHHHTT-SSCEEEEEEEESSCGGGSCCTTTTTCCEEECCCCTTTHHHHHH
T ss_pred EEEEEcCCCC--------------CHHHHHHHHHCC-CCCeEEEEEEcCCChhHHHHHHHcCCCEEEeCCCcccHHHHHH
Confidence 5677777665 345566666542 332 44 456677 6667777888998866442211111 2
Q ss_pred HHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHH
Q 028257 126 RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGV 159 (211)
Q Consensus 126 si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~l 159 (211)
.+...++.. +.| ++++.+=+-.++++.++..
T Consensus 157 ~~~~~l~~~--~~D-livlagy~~il~~~~l~~~ 187 (288)
T 3obi_A 157 AITALIAQT--HTD-LVVLARYMQILSDEMSARL 187 (288)
T ss_dssp HHHHHHHHH--TCC-EEEESSCCSCCCHHHHHHT
T ss_pred HHHHHHHhc--CCC-EEEhhhhhhhCCHHHHhhh
Confidence 344555554 234 6677777778888887764
No 86
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=48.65 E-value=98 Score=24.44 Aligned_cols=90 Identities=17% Similarity=0.171 Sum_probs=52.6
Q ss_pred EEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCCCC-CeEE-EEcCc--HHHHHHHHHcCCeEeeC-CcccCCCh--
Q 028257 52 GIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTL-DHLV-VATDD--EKIAECCQQFGADVIMT-SESCRNGT-- 124 (211)
Q Consensus 52 aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~~i-d~IV-Vvt~~--e~i~~~~~~~~v~vi~~-~~~~~g~~-- 124 (211)
..|++-|.|+ -++..+++.+.. .+ -+|+ |++|. ..+.+.++++|++++.. +..+.+..
T Consensus 5 iavl~Sg~Gs--------------nl~ali~~~~~~-~l~~eI~~Visn~~~a~v~~~A~~~gIp~~~~~~~~~~~r~~~ 69 (211)
T 3p9x_A 5 VAIFASGSGT--------------NAEAIIQSQKAG-QLPCEVALLITDKPGAKVVERVKVHEIPVCALDPKTYPSKEAY 69 (211)
T ss_dssp EEEECCTTCH--------------HHHHHHHHHHTT-CCSSEEEEEEESCSSSHHHHHHHTTTCCEEECCGGGSSSHHHH
T ss_pred EEEEEeCCch--------------HHHHHHHHHHcC-CCCcEEEEEEECCCCcHHHHHHHHcCCCEEEeChhhcCchhhh
Confidence 4577777665 256667777543 33 2554 45553 35667888899988543 32332221
Q ss_pred -HHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHH
Q 028257 125 -ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGV 159 (211)
Q Consensus 125 -~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~l 159 (211)
..+...++.. +.| ++++.+=+-.++++.++..
T Consensus 70 d~~~~~~l~~~--~~D-liv~agy~~Il~~~~l~~~ 102 (211)
T 3p9x_A 70 EIEVVQQLKEK--QID-FVVLAGYMRLVGPTLLGAY 102 (211)
T ss_dssp HHHHHHHHHHT--TCC-EEEESSCCSCCCHHHHHHH
T ss_pred HHHHHHHHHhc--CCC-EEEEeCchhhcCHHHHhhc
Confidence 2345556655 234 5566666668888887754
No 87
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=46.38 E-value=11 Score=22.54 Aligned_cols=40 Identities=15% Similarity=0.212 Sum_probs=22.8
Q ss_pred CCCCCCCCCCchhHHHHHHhhcchhh--hhhceeehcccCCCCC
Q 028257 6 ICSPSESSSSTKSWIVHGIVAGAAIA--VAVGARAYLGRSKNFR 47 (211)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 47 (211)
+|---++ +|.-.+|.++.|. +.+. +|++-.+|.+|++...
T Consensus 1 gCp~~~~-~~~~~~Ia~~vVG-vll~vi~~l~~~~~~RRR~~~~ 42 (44)
T 2jwa_A 1 GCPAEQR-ASPLTSIISAVVG-ILLVVVLGVVFGILIKRRQQKI 42 (44)
T ss_dssp CCCCCCC-CCSHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCSCC
T ss_pred CCCCCCC-CCcccchHHHHHH-HHHHHHHHHHHHhheehhhhhc
Confidence 4543323 3466777666654 5554 5666667777766543
No 88
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=45.36 E-value=7.7 Score=23.27 Aligned_cols=38 Identities=21% Similarity=0.368 Sum_probs=21.2
Q ss_pred CCCCCCCCCCchhHHHHHHhhcchhh--hhhceeehcccCCCC
Q 028257 6 ICSPSESSSSTKSWIVHGIVAGAAIA--VAVGARAYLGRSKNF 46 (211)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 46 (211)
+|-.. ++| +- =|..+.|.|+.+. ++++..+|.+|++..
T Consensus 2 gCp~~-~s~-~~-~IA~gVVgGv~~~~ii~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 2 GCPTN-GPK-IP-SIATGMVGALLLLLVVALGIGLFMRRRHIV 41 (44)
T ss_dssp CCCCC-CSC-SS-SSTHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCC-CCC-cc-eEEeehhHHHHHHHHHHHHHHHHhhhhHhh
Confidence 57553 233 22 2888888888875 343334455555543
No 89
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=42.41 E-value=1.2e+02 Score=23.86 Aligned_cols=82 Identities=9% Similarity=0.056 Sum_probs=44.7
Q ss_pred ehHHHHHHHHHcCCCCCeEEEEcCcHH--HHHHHHHcCCeEeeCC-cccCCCh---HHHHHHHHhhccCCCEEEEEcCCC
Q 028257 75 PMIQRTWERSKLATTLDHLVVATDDEK--IAECCQQFGADVIMTS-ESCRNGT---ERCNEALQKLEKKYDIVVNIQGDE 148 (211)
Q Consensus 75 pLl~~~i~~l~~~~~id~IVVvt~~e~--i~~~~~~~~v~vi~~~-~~~~g~~---~si~~al~~l~~~~d~vlv~~~D~ 148 (211)
+.++..++++.+.-..+-+.|+++.+. -.+.++++|++++..+ ..+.... ..+...++.. +.| ++++.+=+
T Consensus 17 snl~all~~~~~~~~~eI~~Vis~~~~a~~~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~--~~D-liv~agy~ 93 (215)
T 3tqr_A 17 TNLQAIIGAIQKGLAIEIRAVISNRADAYGLKRAQQADIPTHIIPHEEFPSRTDFESTLQKTIDHY--DPK-LIVLAGFM 93 (215)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEEESCTTCHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHTT--CCS-EEEESSCC
T ss_pred HHHHHHHHHHHcCCCCEEEEEEeCCcchHHHHHHHHcCCCEEEeCccccCchhHhHHHHHHHHHhc--CCC-EEEEccch
Confidence 456666777764201323345665432 2456788899886533 2222211 2344555554 234 55666666
Q ss_pred cCCCHHHHHHH
Q 028257 149 PLIEPEIIDGV 159 (211)
Q Consensus 149 Pli~~~~i~~l 159 (211)
-.++++.++..
T Consensus 94 ~il~~~~l~~~ 104 (215)
T 3tqr_A 94 RKLGKAFVSHY 104 (215)
T ss_dssp SCCCHHHHHHT
T ss_pred hhCCHHHHhhc
Confidence 68888887764
No 90
>2zu9_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, glycosyltransferase, GT55, GDP, cytoplasm, magnesium, transferase; HET: GDP; 2.00A {Pyrococcus horikoshii} PDB: 2zu7_A* 2zu8_A*
Probab=41.57 E-value=1.4e+02 Score=26.12 Aligned_cols=41 Identities=17% Similarity=0.087 Sum_probs=30.1
Q ss_pred CChHHHHHHHHhh-ccCCCEEEEEcCCCcCCCHHHHHHHHHHHH
Q 028257 122 NGTERCNEALQKL-EKKYDIVVNIQGDEPLIEPEIIDGVVKALQ 164 (211)
Q Consensus 122 g~~~si~~al~~l-~~~~d~vlv~~~D~Pli~~~~i~~li~~~~ 164 (211)
|...++..|+... ..+.|++++++||. ..+..+..+++.+.
T Consensus 144 GKG~Am~aGl~~A~~~~gd~Vv~~DaDl--~iP~~v~~~~kgy~ 185 (394)
T 2zu9_A 144 GKGEGMLVGLLLAKAIGAEYVGFVDADN--YIPGAVNEYVKDYA 185 (394)
T ss_dssp SHHHHHHHHHHHHHHTTCSEEEECCSCB--SCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhhCCCCEEEEEeCCC--CCHHHHHHHHHHhh
Confidence 4456788888776 12478999999998 56777877777654
No 91
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=34.42 E-value=1.6e+02 Score=22.90 Aligned_cols=81 Identities=14% Similarity=0.184 Sum_probs=43.5
Q ss_pred ehHHHHHHHHHcCC-CCCeEEEEcCc--HHHHHHHHHcCCeEee-CCcccCCC---hHHHHHHHHhhccCCCEEEEEcCC
Q 028257 75 PMIQRTWERSKLAT-TLDHLVVATDD--EKIAECCQQFGADVIM-TSESCRNG---TERCNEALQKLEKKYDIVVNIQGD 147 (211)
Q Consensus 75 pLl~~~i~~l~~~~-~id~IVVvt~~--e~i~~~~~~~~v~vi~-~~~~~~g~---~~si~~al~~l~~~~d~vlv~~~D 147 (211)
+.++.+++++.+.. ..+-+.|+++. ....+.+++++++++. .+..+.+. ...+...++.. +.| ++++.+=
T Consensus 15 ~~~~~~l~~l~~~~l~~~I~~Vit~~~~~~v~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~--~~D-liv~a~y 91 (212)
T 3av3_A 15 TNFQAIVDAAKRGDLPARVALLVCDRPGAKVIERAARENVPAFVFSPKDYPSKAAFESEILRELKGR--QID-WIALAGY 91 (212)
T ss_dssp HHHHHHHHHHHTTCCCEEEEEEEESSTTCHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHT--TCC-EEEESSC
T ss_pred HHHHHHHHHHHhCCCCCeEEEEEeCCCCcHHHHHHHHcCCCEEEeCcccccchhhhHHHHHHHHHhc--CCC-EEEEchh
Confidence 34666677776542 23333456653 3566778889998864 33232221 12344455544 233 4555555
Q ss_pred CcCCCHHHHHH
Q 028257 148 EPLIEPEIIDG 158 (211)
Q Consensus 148 ~Pli~~~~i~~ 158 (211)
+-+++++.++.
T Consensus 92 ~~il~~~~l~~ 102 (212)
T 3av3_A 92 MRLIGPTLLSA 102 (212)
T ss_dssp CSCCCHHHHHH
T ss_pred hhhCCHHHHhh
Confidence 55677766654
No 92
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=33.05 E-value=1.7e+02 Score=23.01 Aligned_cols=79 Identities=10% Similarity=0.163 Sum_probs=45.2
Q ss_pred ehHHHHHHHHHcCCCCC-eE-EEEcCcH--HHHHHHHHcCCeEeeCCc-ccCCChHHHHHHHHhhccCCCEEEEEcCCCc
Q 028257 75 PMIQRTWERSKLATTLD-HL-VVATDDE--KIAECCQQFGADVIMTSE-SCRNGTERCNEALQKLEKKYDIVVNIQGDEP 149 (211)
Q Consensus 75 pLl~~~i~~l~~~~~id-~I-VVvt~~e--~i~~~~~~~~v~vi~~~~-~~~g~~~si~~al~~l~~~~d~vlv~~~D~P 149 (211)
+.++..++++.+. .+. +| .|+++.+ ...+.++++|++++..+. .+. ...+...++... .| ++++.+-+-
T Consensus 20 snl~all~~~~~~-~~~~~I~~Vis~~~~a~~l~~A~~~gIp~~~~~~~~~~--~~~~~~~L~~~~--~D-livlagy~~ 93 (215)
T 3kcq_A 20 SNLEALAKAFSTE-ESSVVISCVISNNAEARGLLIAQSYGIPTFVVKRKPLD--IEHISTVLREHD--VD-LVCLAGFMS 93 (215)
T ss_dssp HHHHHHHHHTCCC--CSEEEEEEEESCTTCTHHHHHHHTTCCEEECCBTTBC--HHHHHHHHHHTT--CS-EEEESSCCS
T ss_pred HHHHHHHHHHHcC-CCCcEEEEEEeCCcchHHHHHHHHcCCCEEEeCcccCC--hHHHHHHHHHhC--CC-EEEEeCCce
Confidence 4566777777543 221 44 4556543 234577888998865332 221 244556666552 34 556666666
Q ss_pred CCCHHHHHHH
Q 028257 150 LIEPEIIDGV 159 (211)
Q Consensus 150 li~~~~i~~l 159 (211)
.++++.++..
T Consensus 94 IL~~~~l~~~ 103 (215)
T 3kcq_A 94 ILPEKFVTDW 103 (215)
T ss_dssp CCCHHHHHHT
T ss_pred EeCHHHHhhc
Confidence 8888777654
No 93
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=31.32 E-value=2e+02 Score=22.85 Aligned_cols=81 Identities=17% Similarity=0.179 Sum_probs=44.8
Q ss_pred ehHHHHHHHHHcCC-CCCeEEEEcCc--HHHHHHHHHcCCeEee-CCcccCCC---hHHHHHHHHhhccCCCEEEEEcCC
Q 028257 75 PMIQRTWERSKLAT-TLDHLVVATDD--EKIAECCQQFGADVIM-TSESCRNG---TERCNEALQKLEKKYDIVVNIQGD 147 (211)
Q Consensus 75 pLl~~~i~~l~~~~-~id~IVVvt~~--e~i~~~~~~~~v~vi~-~~~~~~g~---~~si~~al~~l~~~~d~vlv~~~D 147 (211)
+.++.+++++.+.. ..+-+.|+++. ....+.+++++++++. .+..+.+. ...+...++.. +.| ++++.+-
T Consensus 34 ~~~~~~l~~l~~~~~~~~I~~Vvt~~~~~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~--~~D-liv~agy 110 (229)
T 3auf_A 34 TNLQAILDGCREGRIPGRVAVVISDRADAYGLERARRAGVDALHMDPAAYPSRTAFDAALAERLQAY--GVD-LVCLAGY 110 (229)
T ss_dssp HHHHHHHHHHHTTSSSEEEEEEEESSTTCHHHHHHHHTTCEEEECCGGGSSSHHHHHHHHHHHHHHT--TCS-EEEESSC
T ss_pred HHHHHHHHHHHhCCCCCeEEEEEcCCCchHHHHHHHHcCCCEEEECcccccchhhccHHHHHHHHhc--CCC-EEEEcCh
Confidence 45667777777542 13334456663 3456778889999864 33232221 12344455554 234 4555566
Q ss_pred CcCCCHHHHHH
Q 028257 148 EPLIEPEIIDG 158 (211)
Q Consensus 148 ~Pli~~~~i~~ 158 (211)
+-+++++.++.
T Consensus 111 ~~IL~~~~l~~ 121 (229)
T 3auf_A 111 MRLVRGPMLTA 121 (229)
T ss_dssp CSCCCHHHHHH
T ss_pred hHhCCHHHHhh
Confidence 66777777664
No 94
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=29.94 E-value=2e+02 Score=22.46 Aligned_cols=79 Identities=14% Similarity=0.217 Sum_probs=41.4
Q ss_pred ehHHHHHHHHHcCCCC--CeEEEEcCc--HHHHHHHHHcCCeEee-CCcccCCC---hHHHHHHHHhhccCCCEEEEEcC
Q 028257 75 PMIQRTWERSKLATTL--DHLVVATDD--EKIAECCQQFGADVIM-TSESCRNG---TERCNEALQKLEKKYDIVVNIQG 146 (211)
Q Consensus 75 pLl~~~i~~l~~~~~i--d~IVVvt~~--e~i~~~~~~~~v~vi~-~~~~~~g~---~~si~~al~~l~~~~d~vlv~~~ 146 (211)
+.++.+++++.+. .. +-+.|+++. ....+.++++++.++. .+....+. ...+...++.. +.| ++++.+
T Consensus 13 ~~~~~~l~~l~~~-~~~~~i~~Vvs~~~~~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~--~~D-liv~a~ 88 (216)
T 2ywr_A 13 SNLQAIIDAIESG-KVNASIELVISDNPKAYAIERCKKHNVECKVIQRKEFPSKKEFEERMALELKKK--GVE-LVVLAG 88 (216)
T ss_dssp HHHHHHHHHHHTT-SSCEEEEEEEESCTTCHHHHHHHHHTCCEEECCGGGSSSHHHHHHHHHHHHHHT--TCC-EEEESS
T ss_pred HHHHHHHHHHHhC-CCCCeEEEEEeCCCChHHHHHHHHcCCCEEEeCcccccchhhhhHHHHHHHHhc--CCC-EEEEeC
Confidence 4566777777764 33 334456653 3456778888998865 33222221 12344445544 233 344444
Q ss_pred CCcCCCHHHHH
Q 028257 147 DEPLIEPEIID 157 (211)
Q Consensus 147 D~Pli~~~~i~ 157 (211)
=+-.++++.++
T Consensus 89 y~~il~~~~l~ 99 (216)
T 2ywr_A 89 FMRILSHNFLK 99 (216)
T ss_dssp CCSCCCHHHHT
T ss_pred chhhCCHHHHh
Confidence 44455555554
No 95
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A
Probab=27.78 E-value=2.6e+02 Score=23.09 Aligned_cols=73 Identities=18% Similarity=0.104 Sum_probs=39.5
Q ss_pred HHHHHHHHcCCCCCeEEEEcCcH---------HHHHHHHHcCCeEeeCCcccCCChHHHHHHHHhhccCCCEEEEEcCCC
Q 028257 78 QRTWERSKLATTLDHLVVATDDE---------KIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDE 148 (211)
Q Consensus 78 ~~~i~~l~~~~~id~IVVvt~~e---------~i~~~~~~~~v~vi~~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~ 148 (211)
...++.|.+. +.+-+.|+|+.+ .+.+++++++++++..+ ... ...+...++.. +.|. +++.+=+
T Consensus 13 ~~~L~~L~~~-~~~i~~Vvt~~d~~~g~~~~~~v~~~A~~~gIpv~~~~-~~~--~~~~~~~l~~~--~~Dl-iv~~~y~ 85 (305)
T 2bln_A 13 CLGIEALLAA-GYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPD-NVN--HPLWVERIAQL--SPDV-IFSFYYR 85 (305)
T ss_dssp HHHHHHHHHT-TCEEEEEECCCC------CCCCHHHHHHHHTCCEECCS-CCC--SHHHHHHHHHT--CCSE-EEEESCC
T ss_pred HHHHHHHHHC-CCcEEEEEcCCCCCCCCcCccHHHHHHHHcCCCEECCC-cCC--cHHHHHHHHhc--CCCE-EEEeccc
Confidence 3456666554 354445666543 27788888999876532 211 12344555555 2444 3444444
Q ss_pred cCCCHHHHH
Q 028257 149 PLIEPEIID 157 (211)
Q Consensus 149 Pli~~~~i~ 157 (211)
-+++++.++
T Consensus 86 ~ilp~~il~ 94 (305)
T 2bln_A 86 HLIYDEILQ 94 (305)
T ss_dssp SCCCHHHHT
T ss_pred cccCHHHHh
Confidence 466666655
No 96
>3bej_E Nuclear receptor coactivator 1; FXR, BAR, NR1H4, bIle acid receptor, NHR, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: MUF; 1.90A {Homo sapiens} PDB: 1fm9_B* 1k74_B* 1fm6_B* 1p8d_C* 1rdt_B* 1nrl_C* 3ipq_B* 3ips_C* 3ipu_C* 4dm6_E* 4dm8_C* 3kmg_B* 2hfp_B* 1k7l_B*
Probab=25.21 E-value=20 Score=18.65 Aligned_cols=20 Identities=30% Similarity=0.547 Sum_probs=15.0
Q ss_pred CCCCCCCCCchhHHHHHHhh
Q 028257 7 CSPSESSSSTKSWIVHGIVA 26 (211)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~ 26 (211)
|..|.++-..+.=|+|++..
T Consensus 1 cpss~~sL~EkHkILHrLLQ 20 (26)
T 3bej_E 1 CPSSHSSLTERHKILHRLLQ 20 (26)
T ss_pred CCCchhhHHHHHHHHHHHHH
Confidence 66676666678889999864
No 97
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=25.17 E-value=57 Score=27.06 Aligned_cols=91 Identities=4% Similarity=0.026 Sum_probs=52.4
Q ss_pred EEEecCCCCCCCCCccccccCCeehHHHHHHHHHcCC-CCCeEEEEcCcHH-HHHHHHHcCCeEeeCCcccCCCh---HH
Q 028257 52 GIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLAT-TLDHLVVATDDEK-IAECCQQFGADVIMTSESCRNGT---ER 126 (211)
Q Consensus 52 aIIlA~G~ssRlg~K~ll~l~GkpLl~~~i~~l~~~~-~id~IVVvt~~e~-i~~~~~~~~v~vi~~~~~~~g~~---~s 126 (211)
..|++-|.|+ -++..+++.+.-. ..+-..|++|.+. +.+.++++|++++..+....... ..
T Consensus 91 i~vl~Sg~g~--------------nl~~ll~~~~~g~l~~~i~~Visn~~~a~~~~A~~~gIp~~~~~~~~~~r~~~~~~ 156 (287)
T 3nrb_A 91 VVIMVSKFDH--------------CLGDLLYRHRLGELDMEVVGIISNHPREALSVSLVGDIPFHYLPVTPATKAAQESQ 156 (287)
T ss_dssp EEEEECSCCH--------------HHHHHHHHHHHTSSCCEEEEEEESSCGGGCCCCCCTTSCEEECCCCGGGHHHHHHH
T ss_pred EEEEEeCCCc--------------CHHHHHHHHHCCCCCeEEEEEEeCChHHHHHHHHHcCCCEEEEeccCcchhhHHHH
Confidence 4667766664 3455566665421 1333445667665 66677788988866432211111 23
Q ss_pred HHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHH
Q 028257 127 CNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGV 159 (211)
Q Consensus 127 i~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~l 159 (211)
+...++.. +.| ++++.+=+-.++++.++..
T Consensus 157 ~~~~l~~~--~~D-livlagym~il~~~~l~~~ 186 (287)
T 3nrb_A 157 IKNIVTQS--QAD-LIVLARYMQILSDDLSAFL 186 (287)
T ss_dssp HHHHHHHH--TCS-EEEESSCCSCCCHHHHHHH
T ss_pred HHHHHHHh--CCC-EEEhhhhhhhcCHHHHhhc
Confidence 44555554 234 6677777878998888765
No 98
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=24.66 E-value=2.5e+02 Score=21.87 Aligned_cols=80 Identities=14% Similarity=0.081 Sum_probs=44.3
Q ss_pred hHHHHHHHHHcCC-CCCeEEEEcCc--HHHHHHHHHcCCeEeeCC-cccCCC---hHHHHHHHHhhccCCCEEEEEcCCC
Q 028257 76 MIQRTWERSKLAT-TLDHLVVATDD--EKIAECCQQFGADVIMTS-ESCRNG---TERCNEALQKLEKKYDIVVNIQGDE 148 (211)
Q Consensus 76 Ll~~~i~~l~~~~-~id~IVVvt~~--e~i~~~~~~~~v~vi~~~-~~~~g~---~~si~~al~~l~~~~d~vlv~~~D~ 148 (211)
.++..++++.+.. ..+-+.|+++. ....+.+++++++++..+ ..+.+. ...+...++.. +.| ++++.+=+
T Consensus 13 nl~ali~~~~~~~~~~~i~~Vis~~~~~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~--~~D-liv~agy~ 89 (212)
T 1jkx_A 13 NLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIASAFDSREAYDRELIHEIDMY--APD-VVVLAGFM 89 (212)
T ss_dssp HHHHHHHHHHTTSSSSEEEEEEESCTTCHHHHHHHHTTCEEEECCGGGCSSHHHHHHHHHHHHGGG--CCS-EEEESSCC
T ss_pred HHHHHHHHHHcCCCCceEEEEEeCCCchHHHHHHHHcCCcEEEeCcccccchhhccHHHHHHHHhc--CCC-EEEEeChh
Confidence 4677777777542 12233456653 345677888999986533 222221 12334444444 234 45666666
Q ss_pred cCCCHHHHHH
Q 028257 149 PLIEPEIIDG 158 (211)
Q Consensus 149 Pli~~~~i~~ 158 (211)
-+++++.++.
T Consensus 90 ~il~~~~l~~ 99 (212)
T 1jkx_A 90 RILSPAFVSH 99 (212)
T ss_dssp SCCCHHHHHH
T ss_pred hhCCHHHHhh
Confidence 6777777765
No 99
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Probab=22.21 E-value=1.3e+02 Score=23.99 Aligned_cols=78 Identities=19% Similarity=0.076 Sum_probs=39.7
Q ss_pred hhhceeehcccCCCCCCcEEEEEecCCCCCCCC--CccccccCCeehHHHHHHHHHcCCCCCeEEEEcCcHH---HHHHH
Q 028257 32 VAVGARAYLGRSKNFRSRVVGIIPARFASSRFE--GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEK---IAECC 106 (211)
Q Consensus 32 ~~~~~~~~~~~~~~~~m~i~aIIlA~G~ssRlg--~K~ll~l~GkpLl~~~i~~l~~~~~id~IVVvt~~e~---i~~~~ 106 (211)
-|+||+-.++.=++..+....+-+ |-..|+| +|..-.+ ...+...++.+.+. +++-|++.++... +..+-
T Consensus 8 SG~GGltv~~~l~~~lP~~~~iy~--~D~~~~Pyg~~s~~~i--~~~~~~~~~~L~~~-g~d~iviaCNTa~~~~~~~lr 82 (255)
T 2jfz_A 8 SGVGGFSVLKSLLKARLFDEIIYY--GDSARVPYGTKDPTTI--KQFGLEALDFFKPH-EIELLIVACNTASALALEEMQ 82 (255)
T ss_dssp SSSTTHHHHHHHHHTTCCSEEEEE--ECTTTCCCTTSCHHHH--HHHHHHHHHHHGGG-CCSCEEECCHHHHHHTHHHHH
T ss_pred CCccHHHHHHHHHHHCCCCCEEEE--eCCCCCCCCCCCHHHH--HHHHHHHHHHHHHC-CCCEEEEeCchhhHHHHHHHH
Confidence 478888766322222323223332 2344554 3543332 23444455566665 6888988887544 33333
Q ss_pred HHcCCeEe
Q 028257 107 QQFGADVI 114 (211)
Q Consensus 107 ~~~~v~vi 114 (211)
+.++++++
T Consensus 83 ~~~~iPvi 90 (255)
T 2jfz_A 83 KYSKIPIV 90 (255)
T ss_dssp HHCSSCEE
T ss_pred HhCCCCEE
Confidence 45566553
No 100
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=21.91 E-value=3.1e+02 Score=21.91 Aligned_cols=76 Identities=20% Similarity=0.159 Sum_probs=44.4
Q ss_pred CeEEEEcCc-----HHHHHHHHHcCCeEeeCCcccCCChHHHHHHHHhhccCCCEEEEEcCCCcCCCHHHHHHHHHHHHh
Q 028257 91 DHLVVATDD-----EKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 165 (211)
Q Consensus 91 d~IVVvt~~-----e~i~~~~~~~~v~vi~~~~~~~g~~~si~~al~~l~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~ 165 (211)
.+++++|+. ..+...+.+.|.+++.... ..+.+....+.+......+..+.+|. -+++.++++++...+
T Consensus 9 gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~----~~~~~~~~~~~l~~~g~~~~~~~~Dv--~~~~~v~~~~~~~~~ 82 (255)
T 4g81_D 9 GKTALVTGSARGLGFAYAEGLAAAGARVILNDI----RATLLAESVDTLTRKGYDAHGVAFDV--TDELAIEAAFSKLDA 82 (255)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEECCS----CHHHHHHHHHHHHHTTCCEEECCCCT--TCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHHHHhcCCcEEEEEeeC--CCHHHHHHHHHHHHH
Confidence 377888852 2333444456888866421 12233344444433344577888884 789999999888753
Q ss_pred C---CCeEEE
Q 028257 166 A---PDAVFS 172 (211)
Q Consensus 166 ~---~d~vv~ 172 (211)
. -|.++.
T Consensus 83 ~~G~iDiLVN 92 (255)
T 4g81_D 83 EGIHVDILIN 92 (255)
T ss_dssp TTCCCCEEEE
T ss_pred HCCCCcEEEE
Confidence 2 355543
No 101
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=21.28 E-value=2.9e+02 Score=22.35 Aligned_cols=19 Identities=26% Similarity=0.156 Sum_probs=14.0
Q ss_pred HHHhhccCCCEEEEEcCCCcC
Q 028257 130 ALQKLEKKYDIVVNIQGDEPL 150 (211)
Q Consensus 130 al~~l~~~~d~vlv~~~D~Pl 150 (211)
|++.. +.|+++++++|.-+
T Consensus 124 al~~A--~gd~i~flD~D~i~ 142 (287)
T 2fy7_A 124 ALKDY--DYTCFVFSDVDLIP 142 (287)
T ss_dssp HHHHS--CCCEEEEECTTEEE
T ss_pred HHHhC--CCCEEEEECCCccc
Confidence 33554 57999999999843
No 102
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=20.42 E-value=3.1e+02 Score=21.32 Aligned_cols=81 Identities=10% Similarity=0.161 Sum_probs=43.1
Q ss_pred ehHHHHHHHHHcCC-CCCeEEEEcCcH--HHHHHHHHcCCeEee-CCcccCCCh---HHHHHHHHhhccCCCEEEEEcCC
Q 028257 75 PMIQRTWERSKLAT-TLDHLVVATDDE--KIAECCQQFGADVIM-TSESCRNGT---ERCNEALQKLEKKYDIVVNIQGD 147 (211)
Q Consensus 75 pLl~~~i~~l~~~~-~id~IVVvt~~e--~i~~~~~~~~v~vi~-~~~~~~g~~---~si~~al~~l~~~~d~vlv~~~D 147 (211)
+.++..++.+++.. ..+-+.|+++.+ ...+.+++++++++. .+....+.. ..+...++.. +.| ++++.+=
T Consensus 12 s~L~aLi~~~~~~~~~~~I~~Vvs~~~~~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~--~~D-liv~a~y 88 (209)
T 1meo_A 12 SNLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEF--SID-IVCLAGF 88 (209)
T ss_dssp TTHHHHHHHHHSTTCSCEEEEEEESSTTCHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHT--TCC-EEEEESC
T ss_pred hHHHHHHHHHhcCCCCcEEEEEEeCCCChHHHHHHHHcCCCEEEECccccCchhhhhHHHHHHHHhc--CCC-EEEEcch
Confidence 45666677766532 233334556543 345677888998864 333332211 2344555554 234 4455555
Q ss_pred CcCCCHHHHHH
Q 028257 148 EPLIEPEIIDG 158 (211)
Q Consensus 148 ~Pli~~~~i~~ 158 (211)
+-+++++.++.
T Consensus 89 ~~il~~~~l~~ 99 (209)
T 1meo_A 89 MRILSGPFVQK 99 (209)
T ss_dssp CSCCCHHHHHH
T ss_pred hhhCCHHHHhh
Confidence 55777766654
Done!