BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028258
         (211 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2V6F|A Chain A, Structure Of Progesterone 5beta-Reductase From Digitalis
           Lanata
 pdb|2V6G|A Chain A, Structure Of Progesterone 5beta-reductase From Digitalis
           Lanata In Complex With Nadp
          Length = 364

 Score =  131 bits (330), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/196 (40%), Positives = 108/196 (55%), Gaps = 11/196 (5%)

Query: 10  SVALIIGVTGISGLSLAEALKNPTTPGSPWKVYGAARRPPPGWFPTALVDRYITFDALDP 69
           SVALI+GVTGI G SLAE L    TPG PWKVYG ARR  P W     ++ Y+  D  DP
Sbjct: 2   SVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAWHEDNPIN-YVQCDISDP 60

Query: 70  TDTALKLSLISQEITNLFWVPLQVQESEEVNIFKNSTMLKXXXXXXXXXXXXXXXXXHVA 129
            D+  KLS ++ ++T++F+V    + +E+ N   NS M +                 H++
Sbjct: 61  DDSQAKLSPLT-DVTHVFYVTWANRSTEQENCEANSKMFR---NVLDAVIPNCPNLKHIS 116

Query: 130 LLTGTKHYMGPIFDPSLAGQLMPYEVPFKEDSSRLPFPNFYYELEDV---SASYSPAITY 186
           L TG KHYMGP       G++  ++ P+ ED  RL + NFYY+LED+          +T+
Sbjct: 117 LQTGRKHYMGPF---ESYGKIESHDPPYTEDLPRLKYMNFYYDLEDIMLEEVEKKEGLTW 173

Query: 187 SVHRSSVIIGASPRSL 202
           SVHR   I G SP S+
Sbjct: 174 SVHRPGNIFGFSPYSM 189


>pdb|1N7G|A Chain A, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
          Ternary Complex With Nadph And Gdp-rhamnose.
 pdb|1N7G|B Chain B, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
          Ternary Complex With Nadph And Gdp-rhamnose.
 pdb|1N7G|C Chain C, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
          Ternary Complex With Nadph And Gdp-rhamnose.
 pdb|1N7G|D Chain D, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
          Ternary Complex With Nadph And Gdp-rhamnose.
 pdb|1N7H|A Chain A, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
          Complex With Nadph And Gdp
 pdb|1N7H|B Chain B, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
          Complex With Nadph And Gdp
          Length = 381

 Score = 29.6 bits (65), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 5/40 (12%)

Query: 8  PKSVALIIGVTGISGLSLAEALKNPTTPGSPWKVYGAARR 47
          P+ +ALI G+TG  G  L E L      G  ++V+G  RR
Sbjct: 27 PRKIALITGITGQDGSYLTEFL-----LGKGYEVHGLIRR 61


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.134    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,682,150
Number of Sequences: 62578
Number of extensions: 210135
Number of successful extensions: 398
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 389
Number of HSP's gapped (non-prelim): 7
length of query: 211
length of database: 14,973,337
effective HSP length: 95
effective length of query: 116
effective length of database: 9,028,427
effective search space: 1047297532
effective search space used: 1047297532
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)