BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028259
         (211 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q62018|CTR9_MOUSE RNA polymerase-associated protein CTR9 homolog OS=Mus musculus
            GN=Ctr9 PE=1 SV=2
          Length = 1173

 Score = 37.0 bits (84), Expect = 0.086,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 7/89 (7%)

Query: 101  SSADPERSEKSRSRRSKQSNKDLSESTRSKGASEGGGTDIPKKSRRKKSKDSADGSSRSS 160
            S++D +  E+   R S +S+ D     ++K  SE G    P++S R++S + +D S + S
Sbjct: 1037 SNSDSDDDERPNRRASSESDSD---DNQNKSGSEAGS---PRRSGRQESDEDSD-SDQPS 1089

Query: 161  RTSRRGQSSKSDTASECGSVSKSNNINNE 189
            R  RR  S +SD  S     S S    NE
Sbjct: 1090 RKRRRSGSEQSDNESVQSGRSPSGASENE 1118


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.301    0.119    0.323 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,956,636
Number of Sequences: 539616
Number of extensions: 3110999
Number of successful extensions: 20949
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 1053
Number of HSP's that attempted gapping in prelim test: 13125
Number of HSP's gapped (non-prelim): 6116
length of query: 211
length of database: 191,569,459
effective HSP length: 112
effective length of query: 99
effective length of database: 131,132,467
effective search space: 12982114233
effective search space used: 12982114233
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 59 (27.3 bits)