Query 028259
Match_columns 211
No_of_seqs 77 out of 79
Neff 2.7
Searched_HMMs 46136
Date Fri Mar 29 08:44:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028259.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028259hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00132 CRIB PAK (p21 activate 99.1 2E-11 4.3E-16 81.3 2.1 36 28-63 1-40 (42)
2 PF00786 PBD: P21-Rho-binding 99.0 1.4E-10 3E-15 81.4 0.8 36 29-64 1-40 (59)
3 smart00285 PBD P21-Rho-binding 98.7 7.7E-09 1.7E-13 67.2 2.3 31 30-60 1-35 (36)
4 cd01093 CRIB_PAK_like PAK (p21 98.7 1.1E-08 2.3E-13 69.4 2.4 36 29-64 2-41 (46)
5 KOG0578 p21-activated serine/t 87.0 0.38 8.2E-06 47.6 2.1 40 27-66 25-68 (550)
6 KOG3671 Actin regulatory prote 83.1 0.73 1.6E-05 45.8 2.0 38 27-64 233-279 (569)
7 KOG2842 Interferon-related pro 25.0 61 0.0013 31.8 2.6 37 145-183 4-40 (427)
8 PF03490 Varsurf_PPLC: Variant 22.0 36 0.00079 24.6 0.4 18 50-67 7-24 (51)
9 COG4868 Uncharacterized protei 13.1 76 0.0016 31.2 0.4 11 30-40 143-153 (493)
10 PRK13142 hisH imidazole glycer 9.6 1.3E+02 0.0029 25.7 0.7 13 32-45 105-117 (192)
No 1
>cd00132 CRIB PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway. CRIB-containing effector proteins are functionally diverse and include serine/threonine kinases, tyrosine kinases, actin-binding proteins, and adapter molecules.
Probab=99.14 E-value=2e-11 Score=81.31 Aligned_cols=36 Identities=42% Similarity=0.870 Sum_probs=30.0
Q ss_pred eeecCCCccccceeeccCCC--CC-C-CchhhhhhhcCCC
Q 028259 28 MQIGFPTDVKHVAHIGWDGP--SV-N-SPSWMNEFKASEL 63 (211)
Q Consensus 28 meIG~PTDVkHVaHIGwDg~--s~-n-~PsWm~~fk~~~~ 63 (211)
|+||.||||+||+|||||+. .. + +|.|+.+|+.+.+
T Consensus 1 ~~IS~Ptnf~H~~HvG~d~~g~~~~~~p~~w~~l~~~~~i 40 (42)
T cd00132 1 MEISTPTDFKHISHVGWDGVGFDGANLPPDLQSLFQTAGI 40 (42)
T ss_pred CcccCCCCcCcccccCCCCCCccccCCCHHHHHHHHHccC
Confidence 78999999999999999974 22 3 5599999998654
No 2
>PF00786 PBD: P21-Rho-binding domain; InterPro: IPR000095 The molecular bases of the versatile functions of Rho-like GTPases are still unknown. Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB). The Cdc42/Rac interactive binding (CRIB) region has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway []. In fission yeast pak1+ encodes a protein kinase that interacts with Cdc42p and is involved in the control of cell polarity and mating [].; GO: 0005515 protein binding; PDB: 2OV2_O 1EES_B 2ODB_B 1E0A_B 2QME_I 1F3M_B 3PCS_H 1T84_A 2K42_A 1EJ5_A ....
Probab=98.97 E-value=1.4e-10 Score=81.39 Aligned_cols=36 Identities=42% Similarity=0.784 Sum_probs=27.4
Q ss_pred eecCCCccccceeeccCCCCC----CCchhhhhhhcCCCC
Q 028259 29 QIGFPTDVKHVAHIGWDGPSV----NSPSWMNEFKASELG 64 (211)
Q Consensus 29 eIG~PTDVkHVaHIGwDg~s~----n~PsWm~~fk~~~~~ 64 (211)
+||.|||||||+|||||+.++ -+|.|++.|+.+++.
T Consensus 1 ~Is~P~nf~H~~HVg~d~~~g~~~glp~ew~~~l~~~~it 40 (59)
T PF00786_consen 1 DISNPTNFKHVAHVGWDPNTGGFTGLPPEWEKLLKSSGIT 40 (59)
T ss_dssp TB---EEEEEEEEEEEETTTTEEES--HHHHHHHHSCTTS
T ss_pred CCCCCCCCcceeeeccCCCccccccCCHHHHhhccccCCC
Confidence 699999999999999999775 389999999998543
No 3
>smart00285 PBD P21-Rho-binding domain. Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB).
Probab=98.71 E-value=7.7e-09 Score=67.16 Aligned_cols=31 Identities=42% Similarity=0.798 Sum_probs=26.1
Q ss_pred ecCCCccccceeeccCCCCC----CCchhhhhhhc
Q 028259 30 IGFPTDVKHVAHIGWDGPSV----NSPSWMNEFKA 60 (211)
Q Consensus 30 IG~PTDVkHVaHIGwDg~s~----n~PsWm~~fk~ 60 (211)
|+.||||+|++|+|||+... -+|.|...|+.
T Consensus 1 IS~P~nf~H~~HVg~d~~~~~f~glp~ew~~~l~~ 35 (36)
T smart00285 1 ISTPTDFKHIAHVGFDGQTGEFTGLPTEWESLLKT 35 (36)
T ss_pred CCCCCCCcEEEEeeECCCCCccCCCCHHHHHHhcc
Confidence 89999999999999998332 38999988764
No 4
>cd01093 CRIB_PAK_like PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway. This subgroup of CRIB/PBD-domains is found N-terminal of Serine/Threonine kinase domains in PAK and PAK-like proteins.
Probab=98.68 E-value=1.1e-08 Score=69.38 Aligned_cols=36 Identities=31% Similarity=0.562 Sum_probs=30.6
Q ss_pred eecCCCccccceeeccCCCCC----CCchhhhhhhcCCCC
Q 028259 29 QIGFPTDVKHVAHIGWDGPSV----NSPSWMNEFKASELG 64 (211)
Q Consensus 29 eIG~PTDVkHVaHIGwDg~s~----n~PsWm~~fk~~~~~ 64 (211)
+|+.||||+|+.|||||...+ -+|.|.+.|+.+++.
T Consensus 2 ~IS~P~n~~H~~Hv~~d~~~g~f~glP~eW~~ll~~sgis 41 (46)
T cd01093 2 EISSPTNFKHRVHVGFDPQTGEFTGLPEEWQRLLKSSGIT 41 (46)
T ss_pred ccCCCCCceeeeEeeECCCCCcccCCCHHHHHHHHHcCCC
Confidence 699999999999999998544 289999999986643
No 5
>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]
Probab=87.04 E-value=0.38 Score=47.64 Aligned_cols=40 Identities=23% Similarity=0.508 Sum_probs=34.3
Q ss_pred ceeecCCCccccceeeccCCCCCC----CchhhhhhhcCCCCCC
Q 028259 27 EMQIGFPTDVKHVAHIGWDGPSVN----SPSWMNEFKASELGGD 66 (211)
Q Consensus 27 emeIG~PTDVkHVaHIGwDg~s~n----~PsWm~~fk~~~~~~s 66 (211)
--+|+.|++++|..|.|.|.-.++ +..|-..++...+...
T Consensus 25 ~s~iS~P~nf~h~vHvGfd~~tg~ftGlP~~W~~Ll~~s~it~~ 68 (550)
T KOG0578|consen 25 KSEISSPSNFEHRVHVGFDPVTGEFTGLPKQWQRLLQSSEITKR 68 (550)
T ss_pred CCccCCCCCccceeecccCCCcccccCCcHHHHHHhcchhhccc
Confidence 489999999999999999988774 7799999988776533
No 6
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=83.07 E-value=0.73 Score=45.77 Aligned_cols=38 Identities=32% Similarity=0.668 Sum_probs=28.5
Q ss_pred ceeecCCCccccceeeccCCCCC---------CCchhhhhhhcCCCC
Q 028259 27 EMQIGFPTDVKHVAHIGWDGPSV---------NSPSWMNEFKASELG 64 (211)
Q Consensus 27 emeIG~PTDVkHVaHIGwDg~s~---------n~PsWm~~fk~~~~~ 64 (211)
--.|+.||.++|++|+|||--.+ +.|.--+.|..+++.
T Consensus 233 k~disaPtnf~h~~hVgwd~~~gf~~~~~p~~~dp~~nn~~s~agis 279 (569)
T KOG3671|consen 233 KADISAPTNFPHIPHVGWDEQVGFDSAPAPNNNDPPLNNLFSSAGIS 279 (569)
T ss_pred cccCCCCCCCccccccCCCcCCCcccCCCCCCCChhhhcccccCCCC
Confidence 36899999999999999997654 245556667666654
No 7
>KOG2842 consensus Interferon-related protein PC4 like [Cytoskeleton]
Probab=24.98 E-value=61 Score=31.83 Aligned_cols=37 Identities=22% Similarity=0.344 Sum_probs=26.5
Q ss_pred ccccCCCCCCCCCcccccccccCCCCCCCCCcCCCcccC
Q 028259 145 RRKKSKDSADGSSRSSRTSRRGQSSKSDTASECGSVSKS 183 (211)
Q Consensus 145 RRKKsK~ss~GSs~sSR~~~~~q~~~~~~~Se~gs~~~s 183 (211)
+||++||...++|+ |+.+..++.++..++++++....
T Consensus 4 ~r~~nk~~~~~~G~--~a~~~~~~~~d~~s~~s~S~~~~ 40 (427)
T KOG2842|consen 4 NRKRNKGMGKKGGG--RALAGDDDSNDTISSDSGSMDST 40 (427)
T ss_pred cccCCCCCCCCCCc--ccccCCCccCCcccccccccccc
Confidence 56677888733333 77777899999999999965443
No 8
>PF03490 Varsurf_PPLC: Variant-surface-glycoprotein phospholipase C; InterPro: IPR003633 Variant-surface-glycoprotein phospholipase C, by hydrolysis of the attached glycolipid, releases soluble variant surface glycoprotein containing phosphoinositol from the cell wall after lysis. It catalyses the conversion of variant-surface-glycoprotein 1,2 didecanoyl-SN-phosphatidylinositol and water to 1,2-didecanoylglycerol and the soluble variant-surface-glycoprotein. It also cleaves similar membrane anchors on some mammalian proteins.; GO: 0047396 glycosylphosphatidylinositol diacylglycerol-lyase activity, 0006650 glycerophospholipid metabolic process
Probab=21.97 E-value=36 Score=24.61 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=13.0
Q ss_pred CCchhhhhhhcCCCCCCC
Q 028259 50 NSPSWMNEFKASELGGDI 67 (211)
Q Consensus 50 n~PsWm~~fk~~~~~~s~ 67 (211)
++-+||+|+++.-....+
T Consensus 7 ~PqSWM~DLrS~I~~~~I 24 (51)
T PF03490_consen 7 HPQSWMSDLRSSIGEMAI 24 (51)
T ss_pred CcHHHHHHHHHHHhccee
Confidence 467999999986554443
No 9
>COG4868 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=13.08 E-value=76 Score=31.18 Aligned_cols=11 Identities=55% Similarity=1.135 Sum_probs=9.2
Q ss_pred ecCCCccccce
Q 028259 30 IGFPTDVKHVA 40 (211)
Q Consensus 30 IG~PTDVkHVa 40 (211)
=||||||.|+.
T Consensus 143 kGYPtD~~~Iv 153 (493)
T COG4868 143 KGYPTDVDHIV 153 (493)
T ss_pred CCCCCchhhee
Confidence 49999999863
No 10
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=9.61 E-value=1.3e+02 Score=25.67 Aligned_cols=13 Identities=38% Similarity=1.020 Sum_probs=0.0
Q ss_pred CCCccccceeeccC
Q 028259 32 FPTDVKHVAHIGWD 45 (211)
Q Consensus 32 ~PTDVkHVaHIGwD 45 (211)
++++++ |.||||+
T Consensus 105 f~~~~~-vph~GWn 117 (192)
T PRK13142 105 IQTEYP-VPHLGWN 117 (192)
T ss_pred CCCCCC-CCccccc
Done!