Query 028259
Match_columns 211
No_of_seqs 77 out of 79
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 14:12:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028259.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028259hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1cee_B Wiskott-aldrich syndrom 99.2 7.6E-12 2.6E-16 87.6 3.2 41 25-65 4-49 (59)
2 2qme_I CRIB domain of the seri 98.9 1.6E-10 5.4E-15 74.2 1.0 31 29-59 1-35 (36)
3 1f3m_A Serine/threonine-protei 98.9 5E-10 1.7E-14 82.7 1.9 38 27-64 3-44 (80)
4 2odb_B Serine/threonine-protei 98.6 4.9E-09 1.7E-13 66.8 0.9 30 29-58 1-34 (35)
5 2ov2_I Serine/threonine-protei 98.6 5.8E-09 2E-13 66.4 0.8 30 29-58 1-34 (35)
6 2lnh_A N-WAsp, neural wiskott- 98.0 1.4E-06 4.8E-11 62.5 1.0 31 34-64 2-37 (65)
7 1ej5_A WAsp, wiskott-aldrich s 97.5 2.9E-05 1E-09 60.2 2.0 33 34-66 1-38 (107)
8 4fie_A Serine/threonine-protei 95.1 0.0036 1.2E-07 56.4 0.0 36 27-62 5-44 (423)
9 2ph7_A Uncharacterized protein 15.0 46 0.0016 29.3 0.8 14 27-40 210-223 (246)
10 1io2_A Ribonuclease HII; endon 14.6 26 0.0009 28.9 -0.8 16 28-43 166-181 (213)
No 1
>1cee_B Wiskott-aldrich syndrome protein WAsp; CDC42 actin regulator GTPase and the GTPase binding domain of ITS effector WAsp; HET: GCP; NMR {Homo sapiens}
Probab=99.19 E-value=7.6e-12 Score=87.61 Aligned_cols=41 Identities=29% Similarity=0.580 Sum_probs=35.0
Q ss_pred CCceeecCCCccccceeeccCCCCC-----CCchhhhhhhcCCCCC
Q 028259 25 EPEMQIGFPTDVKHVAHIGWDGPSV-----NSPSWMNEFKASELGG 65 (211)
Q Consensus 25 E~emeIG~PTDVkHVaHIGwDg~s~-----n~PsWm~~fk~~~~~~ 65 (211)
-..|+|+.||||+||+|||||..++ -+|.|+..|+.+++..
T Consensus 4 ~~k~~Is~Ptnf~Hv~HvG~d~~~gf~~~g~pp~W~~ll~~sGIt~ 49 (59)
T 1cee_B 4 ISKADIGAPSGFKHVSHVGWDPQNGFDVNNLDPDLRSLFSRAGISE 49 (59)
T ss_dssp CCTTTSCCCCCCEEEEEECCCTTTCCCCSSCCHHHHHHHTTTTSCS
T ss_pred CCCCcccCCCCCCCcceeccCCCCCcccCCCCHHHHHHHHHcCCCH
Confidence 3468999999999999999998664 3899999999977653
No 2
>2qme_I CRIB domain of the serine/threonine-protein kinas; GTPase RAC3, small GTP binding protein, P21 RAC, RAS-related botulinum toxin substrate 3; HET: GCP; 1.75A {Homo sapiens}
Probab=98.93 E-value=1.6e-10 Score=74.22 Aligned_cols=31 Identities=26% Similarity=0.693 Sum_probs=19.7
Q ss_pred eecCCCccccceeeccCCCCC--C--Cchhhhhhh
Q 028259 29 QIGFPTDVKHVAHIGWDGPSV--N--SPSWMNEFK 59 (211)
Q Consensus 29 eIG~PTDVkHVaHIGwDg~s~--n--~PsWm~~fk 59 (211)
+||.||||+||+|||||..++ + +|.|.+.|+
T Consensus 1 ~Is~Ptnf~H~~Hvg~d~~tG~~~glp~~W~~ll~ 35 (36)
T 2qme_I 1 EISLPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQ 35 (36)
T ss_dssp CBCCCEEEEEEEEECCBTTTTBCC-----------
T ss_pred CCcCCCCCCCeeEcccCCCCCcccCCCHHHHHHHh
Confidence 699999999999999998766 2 889998875
No 3
>1f3m_A Serine/threonine-protein kinase PAK-alpha; kinase domain, autoinhibitory fragment, homodimer, transferase; 2.30A {Homo sapiens} SCOP: j.66.1.1 PDB: 1e0a_B* 1ees_B
Probab=98.87 E-value=5e-10 Score=82.75 Aligned_cols=38 Identities=24% Similarity=0.572 Sum_probs=28.2
Q ss_pred ceeecCCCccccceeeccCCCCC----CCchhhhhhhcCCCC
Q 028259 27 EMQIGFPTDVKHVAHIGWDGPSV----NSPSWMNEFKASELG 64 (211)
Q Consensus 27 emeIG~PTDVkHVaHIGwDg~s~----n~PsWm~~fk~~~~~ 64 (211)
+|+||.||||+||+|||||..++ -+|.|...|..+++.
T Consensus 3 ~~~Is~Ptnf~H~~HVg~D~~tG~~~GlP~eW~~ll~~sGIs 44 (80)
T 1f3m_A 3 RPEISLPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNIT 44 (80)
T ss_dssp ------CCSSEEEEEEEEETTTTEEESCCHHHHHHHHTSCCC
T ss_pred CCccCCCCCCCCeeecccCCCCCccCCCCHHHHHHHHHcCCC
Confidence 68999999999999999998776 389999999977654
No 4
>2odb_B Serine/threonine-protein kinase PAK 6; small GTPase, CRIB, protein-protein complex, structu genomics, structural genomics consortium, SGC; HET: GCP; 2.40A {Homo sapiens}
Probab=98.64 E-value=4.9e-09 Score=66.80 Aligned_cols=30 Identities=27% Similarity=0.552 Sum_probs=26.7
Q ss_pred eecCCCccccceeeccCCCCC----CCchhhhhh
Q 028259 29 QIGFPTDVKHVAHIGWDGPSV----NSPSWMNEF 58 (211)
Q Consensus 29 eIG~PTDVkHVaHIGwDg~s~----n~PsWm~~f 58 (211)
+|+.||||+||+|||||..++ -+|.|...|
T Consensus 1 ~Is~Ptnf~H~~Hvg~d~~tG~f~Glp~eW~~ll 34 (35)
T 2odb_B 1 EISAPQNFQHRVHTSFDPKEGKFVGLPPQWQNIL 34 (35)
T ss_dssp CBCCCEEEEEEEEEEEETTTTEEESCCHHHHHHH
T ss_pred CCcCCCCCcCeeeeeECCCCCcccCCCHHHHHHh
Confidence 699999999999999998776 288998876
No 5
>2ov2_I Serine/threonine-protein kinase PAK 4; GTPase RAC3, small GTP binding protein, P21 RAC, RAS-related botulinum toxin substrate 3, signalling protein; HET: GCP; 2.10A {Homo sapiens}
Probab=98.62 E-value=5.8e-09 Score=66.43 Aligned_cols=30 Identities=23% Similarity=0.559 Sum_probs=26.2
Q ss_pred eecCCCccccceeeccCCCCCC----Cchhhhhh
Q 028259 29 QIGFPTDVKHVAHIGWDGPSVN----SPSWMNEF 58 (211)
Q Consensus 29 eIG~PTDVkHVaHIGwDg~s~n----~PsWm~~f 58 (211)
+|+.||||+||+|+|||..++. +|.|...|
T Consensus 1 ~IS~Ptnf~H~~Hvg~d~~tg~~~Glp~eW~~ll 34 (35)
T 2ov2_I 1 EISAPSNFEHRVHTGFDQHEQKFTGLPRQWQSLI 34 (35)
T ss_dssp CBCCCEEEEEEEEEEEETTTTEEESCCGGGTTTC
T ss_pred CCcCCCCCcCeeeeeeCCCCCcccCCCHHHHHHh
Confidence 6999999999999999987652 88998776
No 6
>2lnh_A N-WAsp, neural wiskott-aldrich syndrome protein; protein complex, signaling protein-protein binding complex; NMR {Homo sapiens}
Probab=97.98 E-value=1.4e-06 Score=62.48 Aligned_cols=31 Identities=26% Similarity=0.632 Sum_probs=27.7
Q ss_pred CccccceeeccCCCCC-----CCchhhhhhhcCCCC
Q 028259 34 TDVKHVAHIGWDGPSV-----NSPSWMNEFKASELG 64 (211)
Q Consensus 34 TDVkHVaHIGwDg~s~-----n~PsWm~~fk~~~~~ 64 (211)
||++||+|+|||..++ -+|.|...|+.+++.
T Consensus 2 tnF~Hv~HVG~D~~tGf~~~glp~eW~~ll~~sGIs 37 (65)
T 2lnh_A 2 SNFQHIGHVGWDPNTGFDLNNLDPELKNLFDMCGIS 37 (65)
T ss_dssp CCCSSCCSCCEETTTEECGGGCCTTHHHHHHHHTCC
T ss_pred CCCEeeeeeeeCCCCCcCCcCCCHHHHHHHHHcCCC
Confidence 8999999999998886 299999999998865
No 7
>1ej5_A WAsp, wiskott-aldrich syndrome protein; alpha helix, beta-hairpin turn, blood clotting; NMR {Homo sapiens} SCOP: a.68.1.1 PDB: 1t84_A* 2k42_A
Probab=97.52 E-value=2.9e-05 Score=60.23 Aligned_cols=33 Identities=27% Similarity=0.566 Sum_probs=27.5
Q ss_pred CccccceeeccCCCCC-----CCchhhhhhhcCCCCCC
Q 028259 34 TDVKHVAHIGWDGPSV-----NSPSWMNEFKASELGGD 66 (211)
Q Consensus 34 TDVkHVaHIGwDg~s~-----n~PsWm~~fk~~~~~~s 66 (211)
|+++||+|+|||..++ -+|.|...|..+++...
T Consensus 1 tnF~Hv~HVG~D~~tGF~~~glppeWk~LL~~aGITe~ 38 (107)
T 1ej5_A 1 SGFKHVSHVGWDPQNGFDVNNLDPDLRSLFSRAGISEA 38 (107)
T ss_dssp CCCCCCCCCCCBTTTBCCTTTCCHHHHHHHHHTTCCHH
T ss_pred CCCCcceecccCCCCCcCCCCCCHHHHHHHHHcCCCHH
Confidence 7999999999997654 38999999998887633
No 8
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=95.11 E-value=0.0036 Score=56.42 Aligned_cols=36 Identities=22% Similarity=0.516 Sum_probs=0.0
Q ss_pred ceeecCCCccccceeeccCCCCCC----CchhhhhhhcCC
Q 028259 27 EMQIGFPTDVKHVAHIGWDGPSVN----SPSWMNEFKASE 62 (211)
Q Consensus 27 emeIG~PTDVkHVaHIGwDg~s~n----~PsWm~~fk~~~ 62 (211)
..+|+.||||+|+.|.|.|..++. ++.|-..++.+.
T Consensus 5 ~~~is~p~n~~h~~hvg~d~~tg~f~glP~~W~~ll~~~~ 44 (423)
T 4fie_A 5 RVEISAPSNFEHRVHTGFDQHEQKFTGLPRQWQSLIEESA 44 (423)
T ss_dssp ----------------------------------------
T ss_pred CCcccCCCCCCceeecCccCCCCCcccCCHHHHHHHHHhc
Confidence 468999999999999999976663 889988887544
No 9
>2ph7_A Uncharacterized protein AF_2093; structural genomics, southeast collaboratory for structural genomics, secsg; 2.40A {Archaeoglobus fulgidus dsm 4304}
Probab=15.01 E-value=46 Score=29.30 Aligned_cols=14 Identities=29% Similarity=0.669 Sum_probs=10.7
Q ss_pred ceeecCCCccccce
Q 028259 27 EMQIGFPTDVKHVA 40 (211)
Q Consensus 27 emeIG~PTDVkHVa 40 (211)
+==||||||++=..
T Consensus 210 DPFIGyp~D~~i~~ 223 (246)
T 2ph7_A 210 DPFIGYPKDFRLLK 223 (246)
T ss_dssp EEEECCCSCGGGGG
T ss_pred CCccCCCCCHHHHH
Confidence 35699999998543
No 10
>1io2_A Ribonuclease HII; endonuclease, hydrolase; 2.00A {Thermococcus kodakarensis} SCOP: c.55.3.1 PDB: 2dfh_A 2dff_A 2dfe_A 1x1p_A
Probab=14.59 E-value=26 Score=28.94 Aligned_cols=16 Identities=25% Similarity=0.586 Sum_probs=13.3
Q ss_pred eeecCCCccccceeec
Q 028259 28 MQIGFPTDVKHVAHIG 43 (211)
Q Consensus 28 meIG~PTDVkHVaHIG 43 (211)
.-=|||||-+|.+|+-
T Consensus 166 ~g~GY~td~~t~~~l~ 181 (213)
T 1io2_A 166 IGSGYPSDPRTRAFLE 181 (213)
T ss_dssp CCSSCTTSHHHHHHHH
T ss_pred CCCcCCchHHHHHHHH
Confidence 4479999998888885
Done!