BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028260
(211 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VIC|A Chain A, Crystal Structure Of Cmp-kdo Synthetase
pdb|1VIC|B Chain B, Crystal Structure Of Cmp-kdo Synthetase
Length = 262
Score = 144 bits (363), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 76/160 (47%), Positives = 104/160 (65%), Gaps = 2/160 (1%)
Query: 53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
IIPARFASSR GKPL +I GKPMIQ +E++ L + +++ATD+E +A+ + FGA+
Sbjct: 6 IIPARFASSRLPGKPLADIKGKPMIQHVFEKA-LQSGASRVIIATDNENVADVAKSFGAE 64
Query: 113 VIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
V MTS + +GTER E ++KL +I+VNIQGDEPLI P I+ V L +
Sbjct: 65 VCMTSVNHNSGTERLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMA 124
Query: 172 STAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
S AV E+ F+PN VK + D GY +YFSR +IPY++
Sbjct: 125 SLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDR 164
>pdb|3OAM|A Chain A, Crystal Structure Of Cytidylyltransferase From Vibrio
Cholerae
pdb|3OAM|B Chain B, Crystal Structure Of Cytidylyltransferase From Vibrio
Cholerae
pdb|3OAM|C Chain C, Crystal Structure Of Cytidylyltransferase From Vibrio
Cholerae
pdb|3OAM|D Chain D, Crystal Structure Of Cytidylyltransferase From Vibrio
Cholerae
Length = 252
Score = 139 bits (350), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 73/160 (45%), Positives = 101/160 (63%), Gaps = 2/160 (1%)
Query: 53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
+IPAR+ S+R GKPL +I GKPMIQ +E++ A D +++ATDDE++ + Q FG
Sbjct: 6 VIPARYQSTRLPGKPLADIGGKPMIQWVYEQAMQAGA-DRVIIATDDERVEQAVQAFGGV 64
Query: 113 VIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
V MTS + ++GTER E + K+ D IVVN+QGDEPLI P II V L A +
Sbjct: 65 VCMTSPNHQSGTERLAEVVAKMAIPADHIVVNVQGDEPLIPPAIIRQVADNLAACSAPMA 124
Query: 172 STAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
+ AV + F+PN VK + D GYA+YFSR IP+++
Sbjct: 125 TLAVEIEDEAEVFNPNAVKVITDKSGYALYFSRATIPWDR 164
>pdb|1VH3|A Chain A, Crystal Structure Of Cmp-kdo Synthetase
pdb|1VH3|B Chain B, Crystal Structure Of Cmp-kdo Synthetase
pdb|1VH3|C Chain C, Crystal Structure Of Cmp-kdo Synthetase
Length = 262
Score = 138 bits (347), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/160 (46%), Positives = 101/160 (63%), Gaps = 2/160 (1%)
Query: 53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
IIPARFASSR GKPL +I GKP IQ +E++ L + +++ATD+E +A+ + FGA+
Sbjct: 6 IIPARFASSRLPGKPLADIKGKPXIQHVFEKA-LQSGASRVIIATDNENVADVAKSFGAE 64
Query: 113 VIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
V TS + +GTER E ++KL +I+VNIQGDEPLI P I+ V L
Sbjct: 65 VCXTSVNHNSGTERLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNXA 124
Query: 172 STAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
S AV E+ F+PN VK + D GY +YFSR +IPY++
Sbjct: 125 SLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDR 164
>pdb|3DUV|A Chain A, Crystal Structure Of 3-Deoxy-Manno-Octulosonate
Cytidylyltransferase From Haemophilus Influenzae
Complexed With The Substrate 3-Deoxy-Manno-Octulosonate
In The- Configuration
pdb|3DUV|B Chain B, Crystal Structure Of 3-Deoxy-Manno-Octulosonate
Cytidylyltransferase From Haemophilus Influenzae
Complexed With The Substrate 3-Deoxy-Manno-Octulosonate
In The- Configuration
Length = 262
Score = 138 bits (347), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/160 (46%), Positives = 101/160 (63%), Gaps = 2/160 (1%)
Query: 53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
IIPARFASSR GKPL +I GKP IQ +E++ L + +++ATD+E +A+ + FGA+
Sbjct: 6 IIPARFASSRLPGKPLADIKGKPXIQHVFEKA-LQSGASRVIIATDNENVADVAKSFGAE 64
Query: 113 VIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
V TS + +GTER E ++KL +I+VNIQGDEPLI P I+ V L
Sbjct: 65 VCXTSVNHNSGTERLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNXA 124
Query: 172 STAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
S AV E+ F+PN VK + D GY +YFSR +IPY++
Sbjct: 125 SLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDR 164
>pdb|1H6J|A Chain A, The Three-Dimensional Structure Of Capsule-Specific
Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid Synthetase From
Escherichia Coli
pdb|1H6J|B Chain B, The Three-Dimensional Structure Of Capsule-Specific
Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid Synthetase From
Escherichia Coli
pdb|1H7E|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Apo-Enzyme
pdb|1H7E|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Apo-Enzyme
pdb|1H7F|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Cmp Complex
pdb|1H7F|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Cmp Complex
pdb|1H7G|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Ctp Mg2+ Complex
pdb|1H7G|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Ctp Mg2+ Complex
pdb|1H7H|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Cdp Complex
pdb|1H7H|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Cdp Complex
pdb|1H7T|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Here Complex With Cmp-Neuac,
Cmp-Neuac Complex
pdb|1H7T|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Here Complex With Cmp-Neuac,
Cmp-Neuac Complex
pdb|1GQ9|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase Complexed With Ctp At 100k
pdb|1GQ9|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase Complexed With Ctp At 100k
pdb|1GQC|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase Complexed With Cmp-Kdo At 100k
pdb|1GQC|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase Complexed With Cmp-Kdo At 100k
Length = 245
Score = 132 bits (333), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 101/164 (61%), Gaps = 2/164 (1%)
Query: 48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQ 107
S+ V +IPAR+ SSR GKPL++I+GKPMIQ +ER+ + + VATDD ++ + Q
Sbjct: 1 SKAVIVIPARYGSSRLPGKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDPRVEQAVQ 60
Query: 108 QFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
FG IMT +GT+R E + K+E DI +N+QGDEP+I P ++ +++ ++ P
Sbjct: 61 AFGGKAIMTRNDHESGTDRLVEVMHKVEA--DIYINLQGDEPMIRPRDVETLLQGMRDDP 118
Query: 168 DAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
+T ++ +A +P+ VK VV+ A+YFSR IPY +
Sbjct: 119 ALPVATLCHAISAAEAAEPSTVKVVVNTRQDALYFSRSPIPYPR 162
>pdb|3K8D|A Chain A, Crystal Structure Of E. Coli Lipopolysaccharide Specific
Cmp-Kdo Synthetase In Complex With Ctp And 2-Deoxy-Kdo
pdb|3K8D|B Chain B, Crystal Structure Of E. Coli Lipopolysaccharide Specific
Cmp-Kdo Synthetase In Complex With Ctp And 2-Deoxy-Kdo
pdb|3K8D|C Chain C, Crystal Structure Of E. Coli Lipopolysaccharide Specific
Cmp-Kdo Synthetase In Complex With Ctp And 2-Deoxy-Kdo
pdb|3K8D|D Chain D, Crystal Structure Of E. Coli Lipopolysaccharide Specific
Cmp-Kdo Synthetase In Complex With Ctp And 2-Deoxy-Kdo
pdb|3K8E|C Chain C, Crystal Structure Of E. Coli Lipopolysaccharide Specific
Cmp-Kdo Synthetase
pdb|3K8E|D Chain D, Crystal Structure Of E. Coli Lipopolysaccharide Specific
Cmp-Kdo Synthetase
pdb|3K8E|A Chain A, Crystal Structure Of E. Coli Lipopolysaccharide Specific
Cmp-Kdo Synthetase
pdb|3K8E|B Chain B, Crystal Structure Of E. Coli Lipopolysaccharide Specific
Cmp-Kdo Synthetase
Length = 264
Score = 130 bits (327), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 71/162 (43%), Positives = 100/162 (61%), Gaps = 2/162 (1%)
Query: 51 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFG 110
V IIPAR+AS+R GKPLV+I GKPMI ER++ + + ++VATD E +A + G
Sbjct: 20 VVIIPARYASTRLPGKPLVDINGKPMIVHVLERAR-ESGAERIIVATDHEDVARAVEAAG 78
Query: 111 ADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDA 169
+V MT ++GTER E ++K D ++VN+QGDEP+I II V L
Sbjct: 79 GEVCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVG 138
Query: 170 VFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
+ + AV E+AF+PN VK V+D GYA+YFSR IP+++
Sbjct: 139 MATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDR 180
>pdb|3JTJ|A Chain A, 3-Deoxy-Manno-Octulosonate Cytidylyltransferase From
Yersinia Pestis
Length = 253
Score = 129 bits (325), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 96/162 (59%), Gaps = 2/162 (1%)
Query: 51 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFG 110
+ IIPAR+AS+R GKPL +I GKP + ER+ LA+ D ++VATD + + + G
Sbjct: 7 IAIIPARYASTRLPGKPLADIAGKPXVVHVXERA-LASGADRVIVATDHPDVVKAVEAAG 65
Query: 111 ADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDA 169
+V +T ++GTER E ++ DI+VN+QGDEPL+ P II V L A
Sbjct: 66 GEVCLTRADHQSGTERLAEVIEHYGFADDDIIVNVQGDEPLVPPVIIRQVADNLAACSAG 125
Query: 170 VFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
+ AV E+AF+PN VK V D GYA+YFSR IP+ +
Sbjct: 126 XATLAVPIASSEEAFNPNAVKVVXDAQGYALYFSRATIPWER 167
>pdb|3POL|A Chain A, 2.3 Angstrom Crystal Structure Of
3-deoxy-manno-octulosonate Cytidylyltransferase (kdsb)
From Acinetobacter Baumannii
Length = 276
Score = 125 bits (313), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 97/161 (60%), Gaps = 2/161 (1%)
Query: 53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
+IPARF+SSR GKPL+ I +PMI R +++K D L VATDDE+IAE C+ G D
Sbjct: 28 VIPARFSSSRLPGKPLLLIHDRPMILRVVDQAKKVEGFDDLCVATDDERIAEICRAEGVD 87
Query: 113 VIMTSESCRNGTERCNEALQ-KLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
V++TS +GT+R +E + K DI+VN+QGDEPL+ +++ V K L P+
Sbjct: 88 VVLTSADHPSGTDRLSEVARIKGWDADDIIVNVQGDEPLLPAQLVQQVAKLLVDKPNCSM 147
Query: 172 STAVTSLKPEDAFDPNR-VKCVVDNHGYAIYFSRGLIPYNK 211
ST + D F + VK V+ A+YFSR IPY++
Sbjct: 148 STLCEPIHALDEFQRDSIVKVVMSKQNEALYFSRATIPYDR 188
>pdb|4FCU|A Chain A, 1.9 Angstrom Crystal Structure Of
3-Deoxy-Manno-Octulosonate Cytidylyltransferase (Kdsb)
From Acinetobacter Baumannii Without His- Tag Bound To
The Active Site
Length = 253
Score = 125 bits (313), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 97/161 (60%), Gaps = 2/161 (1%)
Query: 53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
+IPARF+SSR GKPL+ I +PMI R +++K D L VATDDE+IAE C+ G D
Sbjct: 5 VIPARFSSSRLPGKPLLLIHDRPMILRVVDQAKKVEGFDDLCVATDDERIAEICRAEGVD 64
Query: 113 VIMTSESCRNGTERCNEALQ-KLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
V++TS +GT+R +E + K DI+VN+QGDEPL+ +++ V K L P+
Sbjct: 65 VVLTSADHPSGTDRLSEVARIKGWDADDIIVNVQGDEPLLPAQLVQQVAKLLVDKPNCSM 124
Query: 172 STAVTSLKPEDAFDPNR-VKCVVDNHGYAIYFSRGLIPYNK 211
ST + D F + VK V+ A+YFSR IPY++
Sbjct: 125 STLCEPIHALDEFQRDSIVKVVMSKQNEALYFSRATIPYDR 165
>pdb|1VH1|A Chain A, Crystal Structure Of Cmp-Kdo Synthetase
pdb|1VH1|B Chain B, Crystal Structure Of Cmp-Kdo Synthetase
pdb|1VH1|C Chain C, Crystal Structure Of Cmp-Kdo Synthetase
pdb|1VH1|D Chain D, Crystal Structure Of Cmp-Kdo Synthetase
Length = 256
Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 96/162 (59%), Gaps = 2/162 (1%)
Query: 51 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFG 110
V IIPAR+AS+R GKPLV+I GKP I ER++ + + ++VATD E +A + G
Sbjct: 4 VVIIPARYASTRLPGKPLVDINGKPXIVHVLERAR-ESGAERIIVATDHEDVARAVEAAG 62
Query: 111 ADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDA 169
+V T ++GTER E ++K D ++VN+QGDEP I II V L
Sbjct: 63 GEVCXTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPXIPATIIRQVADNLAQRQVG 122
Query: 170 VFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
+ AV E+AF+PN VK V+D GYA+YFSR IP+++
Sbjct: 123 XATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDR 164
>pdb|3TQD|A Chain A, Structure Of The 3-Deoxy-D-Manno-Octulosonate
Cytidylyltransferase (Kdsb) From Coxiella Burnetii
Length = 256
Score = 111 bits (277), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 96/161 (59%), Gaps = 3/161 (1%)
Query: 53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
IIPARF S+R GK LV+I GKP IQ +E S + + + +V+ATDD++I + + FGA
Sbjct: 13 IIPARFDSTRLPGKALVDIAGKPXIQHVYE-SAIKSGAEEVVIATDDKRIRQVAEDFGAV 71
Query: 113 VIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
V TS ++GTER EA L + D I+V +QGDEPLI P+ I + + L +
Sbjct: 72 VCXTSSDHQSGTERIAEAAVALGFEDDEIIVCLQGDEPLIPPDAIRKLAEDLDEHDNVKV 131
Query: 172 STAVTSLKPEDA-FDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
++ T + D F+P+ K V++ YA+YFS IP+ +
Sbjct: 132 ASLCTPITEVDELFNPHSTKVVLNRRNYALYFSHAPIPWGR 172
>pdb|2Y6P|A Chain A, Evidence For A Two-Metal-Ion-Mechanism In The
Kdo-Cytidylyltransferase Kdsb
pdb|2Y6P|B Chain B, Evidence For A Two-Metal-Ion-Mechanism In The
Kdo-Cytidylyltransferase Kdsb
pdb|2Y6P|C Chain C, Evidence For A Two-Metal-Ion-Mechanism In The
Kdo-Cytidylyltransferase Kdsb
Length = 234
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 91/158 (57%), Gaps = 10/158 (6%)
Query: 53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
IIPAR S+R + KPL N+LGKP+I+ W L T + +++ATD E++ E + +
Sbjct: 6 IIPARLGSTRLKEKPLKNLLGKPLIR--WVVEGLVKTGERVILATDSERVKEVVEDL-CE 62
Query: 113 VIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFS 172
V +T +G++R ++ L+ D+++N QGDEP + E I + + L+ V
Sbjct: 63 VFLTPSDLPSGSDRVLYVVRDLD--VDLIINYQGDEPFVYEEDIKLIFRELEKGERVV-- 118
Query: 173 TAVTSLKPEDAFD-PNRVKCVVDNHGYAIYFSRGLIPY 209
+ K ++A++ P VK V+D GYA+YFSR IPY
Sbjct: 119 --TLARKDKEAYERPEDVKVVLDREGYALYFSRSPIPY 154
>pdb|1QWJ|A Chain A, The Crystal Structure Of Murine Cmp-5-N-Acetylneuraminic
Acid Synthetase
pdb|1QWJ|B Chain B, The Crystal Structure Of Murine Cmp-5-N-Acetylneuraminic
Acid Synthetase
pdb|1QWJ|C Chain C, The Crystal Structure Of Murine Cmp-5-N-Acetylneuraminic
Acid Synthetase
pdb|1QWJ|D Chain D, The Crystal Structure Of Murine Cmp-5-N-Acetylneuraminic
Acid Synthetase
Length = 229
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 10/132 (7%)
Query: 49 RVVGIIPARFASSRFEGKPLVNI---LGKPMIQRTWERSKLATTLDHLVVATDDEKIAEC 105
+ ++ AR S +G PL NI G P+I + A + V+TD ++I
Sbjct: 3 HLAALVLARGGS---KGIPLKNIKRLAGVPLIGWVLRAALDAGVFQSVWVSTDHDEIENV 59
Query: 106 CQQFGADVI-MTSESCRNGTERCNEALQKL--EKKYDIVVNIQGDEPLIEPEIIDGVVKA 162
+QFGA V +SE+ ++ + + ++ L + DIV NIQ P + P + V +
Sbjct: 60 AKQFGAQVHRRSSETSKDSSTSLDAIVEFLNYHNEVDIVGNIQATSPCLHPTDLQKVAEM 119
Query: 163 L-QAAPDAVFST 173
+ + D+VFS
Sbjct: 120 IREEGYDSVFSV 131
>pdb|2XWL|A Chain A, Crystal Structure Of Ispd From Mycobacterium Smegmatis In
Complex With Ctp And Mg
pdb|2XWL|B Chain B, Crystal Structure Of Ispd From Mycobacterium Smegmatis In
Complex With Ctp And Mg
pdb|2XWM|A Chain A, Crystal Structure Of Ispd From Mycobacterium Smegmatis In
Complex With Cmp
pdb|2XWM|B Chain B, Crystal Structure Of Ispd From Mycobacterium Smegmatis In
Complex With Cmp
Length = 223
Score = 33.5 bits (75), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 58/146 (39%), Gaps = 17/146 (11%)
Query: 51 VGIIPARFASSRFE-GKP--LVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQ 107
V ++PA + R G+P V + G P+++ + + +D +V+A E
Sbjct: 4 VAVVPAAGSGERLRAGRPKAFVTLGGTPLLEHALSGLRASGVIDRIVIAVPPALTDESKL 63
Query: 108 QFGA-DVIMTSESCRNGTERCNEALQKLEKKYD--IVVNIQGDEPLIEPEIIDGVVKALQ 164
FG D ++ S G +R LE D V+ L P +I VV AL+
Sbjct: 64 VFGGEDSVIVS----GGVDRTESVALALEAAGDAEFVLVHDAARALTPPALIARVVAALK 119
Query: 165 AAPDAVFSTAVTSLKPED---AFDPN 187
AV V L P D A D N
Sbjct: 120 EGHSAV----VPGLAPADTIKAVDAN 141
>pdb|2WAW|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Rv0371c
Homolog From Mycobacterium Sp. Strain Jc1
Length = 199
Score = 30.8 bits (68), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 56/131 (42%), Gaps = 10/131 (7%)
Query: 46 FRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATT----LDHLVVATDD-- 99
RSRV G++ A S R G P + P+ T + LA D L+V
Sbjct: 2 LRSRVTGVVLAAGYSRRL-GTPKQLL---PLGDTTLLGATLAMARRCPFDQLIVTLGGAA 57
Query: 100 EKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGV 159
+++ E + G D+++ ++ + AL ++ + +V + GD+P I + +
Sbjct: 58 DEVLEKVELDGLDIVLVDDAGLGXSSSLKSALTWVDPTAEGIVLMLGDQPGITASAVASL 117
Query: 160 VKALQAAPDAV 170
+ + A AV
Sbjct: 118 IAGGRGATIAV 128
>pdb|1XJV|A Chain A, Crystal Structure Of Human Pot1 Bound To Telomeric Single-
Stranded Dna (Ttagggttag)
Length = 294
Score = 30.0 bits (66), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 46 FRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVV 95
++ GI + FAS FEG LG P+I RT + TT DH +V
Sbjct: 84 YKKETQGITSSGFASLTFEGT-----LGAPIIPRTSSKYFNFTTEDHKMV 128
>pdb|3KJO|A Chain A, Crystal Structure Of Hpot1v2-Dtrud(Agggttag)
pdb|3KJP|A Chain A, Crystal Structure Of Hpot1v2-Ggttagggttag
Length = 299
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 46 FRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVV 95
++ GI + FAS FEG LG P+I RT + TT DH +V
Sbjct: 89 YKKETQGITSSGFASLTFEGT-----LGAPIIPRTSSKYFNFTTEDHKMV 133
>pdb|1EYR|A Chain A, Structure Of A Sialic Acid Activating Synthetase, Cmp
Acylneuraminate Synthetase In The Presence And Absence
Of Cdp
pdb|1EYR|B Chain B, Structure Of A Sialic Acid Activating Synthetase, Cmp
Acylneuraminate Synthetase In The Presence And Absence
Of Cdp
pdb|1EZI|A Chain A, Structure Of A Sialic Acid Activating Synthetase, Cmp
Acylneuraminate Synthetase In The Presence And Absence
Of Cdp
pdb|1EZI|B Chain B, Structure Of A Sialic Acid Activating Synthetase, Cmp
Acylneuraminate Synthetase In The Presence And Absence
Of Cdp
Length = 228
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%)
Query: 51 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFG 110
+ +I AR S K L G ++ T + + D ++V+TD IAE + FG
Sbjct: 6 IAVILARQNSKGLPLKNLRKXNGISLLGHTINAAISSKCFDRIIVSTDGGLIAEEAKNFG 65
Query: 111 ADVIM 115
+V++
Sbjct: 66 VEVVL 70
>pdb|1ZVU|A Chain A, Structure Of The Full-Length E. Coli Parc Subunit
Length = 716
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 10/54 (18%)
Query: 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKI 102
R I P S+R +G+PL L P T+DH+++ +DD+K+
Sbjct: 525 RSYAIDPITLPSARGQGEPLTGKLTLPP----------GATVDHMLMESDDQKL 568
>pdb|1ZVT|A Chain A, Structure Of The E. Coli Parc C-terminal Domain
pdb|1ZVT|B Chain B, Structure Of The E. Coli Parc C-terminal Domain
Length = 256
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 10/55 (18%)
Query: 48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKI 102
R I P S+R +G+PL L P T+DH+++ +DD+K+
Sbjct: 54 GRSYAIDPITLPSARGQGEPLTGKLTLPP----------GATVDHMLMESDDQKL 98
>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding
Protein
pdb|1FKL|A Chain A, Atomic Structure Of Fkbp12-Rapaymycin, An Immunophilin-
Immunosuppressant Complex
Length = 107
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 10/56 (17%)
Query: 57 RFASSRFEGKPLVNILGKPMIQRTWE----------RSKLATTLDHLVVATDDEKI 102
+F SSR KP +LGK + R WE R+KL + D+ AT I
Sbjct: 35 KFDSSRDRNKPFKFVLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGI 90
>pdb|3J21|A Chain A, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (50s Ribosomal Proteins)
Length = 216
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Query: 77 IQRTWERSKLATTLDH------LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEA 130
++R R KL L H + D +AE ++ G DVI ++E +
Sbjct: 39 LKRPENRFKLEVVLPHGRGKDVKIAVIADGAVAEAARKLGLDVISSAELEEIAS--SPRQ 96
Query: 131 LQKLEKKYDIVV 142
+KL KKYD +
Sbjct: 97 ARKLAKKYDFFI 108
>pdb|3TUF|A Chain A, Structure Of The Spoiiq-Spoiiiah Pore Forming Complex
Length = 197
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 79 RTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKY 138
R+ ER +L + +V++DD E + + MT+ S GTE+ E L K +
Sbjct: 96 RSKEREEL-----NAIVSSDDATAKEKSEAYDK---MTALSEVEGTEKQLETLIKTQGYE 147
Query: 139 DIVVNIQGD 147
D +VN +GD
Sbjct: 148 DALVNAEGD 156
>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH
Immunosuppressant Fk506
Length = 107
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 10/51 (19%)
Query: 57 RFASSRFEGKPLVNILGKPMIQRTWE----------RSKLATTLDHLVVAT 97
+F SSR + KP +LGK + R WE R+KL + D+ AT
Sbjct: 35 KFDSSRDKNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGAT 85
>pdb|2FLI|A Chain A, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|B Chain B, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|C Chain C, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|D Chain D, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|E Chain E, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|F Chain F, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|G Chain G, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|H Chain H, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|I Chain I, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|J Chain J, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|K Chain K, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|L Chain L, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
Length = 220
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 13/105 (12%)
Query: 63 FEGKPLVNI-LGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVI-MTSESC 120
+G+ + NI G ++ + SKL D ++ D E+ E Q GAD++ + +ES
Sbjct: 38 MDGQFVPNISFGADVVASMRKHSKL--VFDCHLMVVDPERYVEAFAQAGADIMTIHTEST 95
Query: 121 RNGTERCNEALQKLEK---KYDIVVNIQGDEPLIEP--EIIDGVV 160
R+ + ALQK++ K +V+N +EP +++D V+
Sbjct: 96 RH----IHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVL 136
>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
Length = 107
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 10/56 (17%)
Query: 57 RFASSRFEGKPLVNILGKPMIQRTWE----------RSKLATTLDHLVVATDDEKI 102
+F SSR KP +LGK + R WE R+KL + D+ AT I
Sbjct: 35 KFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGI 90
>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin
Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin
pdb|3MDY|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
pdb|3MDY|D Chain D, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
Length = 109
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 10/56 (17%)
Query: 57 RFASSRFEGKPLVNILGKPMIQRTWE----------RSKLATTLDHLVVATDDEKI 102
+F SSR KP +LGK + R WE R+KL + D+ AT I
Sbjct: 37 KFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGI 92
>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With
Huma
pdb|1B6C|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|C Chain C, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|E Chain E, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|G Chain G, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1QPF|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPF|D Chain D, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPL|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1QPL|C Chain C, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1D6O|A Chain A, Native Fkbp
pdb|1D6O|B Chain B, Native Fkbp
pdb|1D7H|A Chain A, Fkbp Complexed With Dmso
pdb|1D7H|B Chain B, Fkbp Complexed With Dmso
pdb|1D7I|A Chain A, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7I|B Chain B, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7J|A Chain A, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|1D7J|B Chain B, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|3FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|4FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|1J4R|A Chain A, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|B Chain B, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|D Chain D, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4H|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000107 Small Molecule
pdb|1J4I|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000308 Small Molecule
pdb|2DG3|A Chain A, Wildtype Fk506-Binding Protein Complexed With Rapamycin
pdb|1FKD|A Chain A, Fk-506 Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1FKF|A Chain A, Atomic Structure Of Fkbp-Fk506, An
Immunophilin-Immunosuppressant Complex
pdb|1FKJ|A Chain A, Atomic Structure Of Fkbp12-Fk506, An Immunophilin
Immunosuppressant Complex
pdb|2FKE|A Chain A, Fk-506-Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1F40|A Chain A, Solution Structure Of Fkbp12 Complexed With Gpi-1046, A
Neurotrophic Ligand
pdb|1FKR|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKS|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKT|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|2PPN|A Chain A, Crystal Structure Of Fkbp12
pdb|1A7X|A Chain A, Fkbp12-Fk1012 Complex
pdb|1A7X|B Chain B, Fkbp12-Fk1012 Complex
pdb|4DH0|A Chain A, X-Ray Crystal Structure Of 28-O-Methylrapamycin Complexed
With Fkbp12: Is The Cyclohexyl Moiety Part Of The
Effector Domain Of Rapamycin?
pdb|2RSE|A Chain A, Nmr Structure Of Fkbp12-Mtor Frb Domain-Rapamycin Complex
Structure Determined Based On Pcs
pdb|1NSG|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
Length = 107
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 10/56 (17%)
Query: 57 RFASSRFEGKPLVNILGKPMIQRTWE----------RSKLATTLDHLVVATDDEKI 102
+F SSR KP +LGK + R WE R+KL + D+ AT I
Sbjct: 35 KFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGI 90
>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp-
12 Complex
pdb|1FKG|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKH|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
pdb|1FKI|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKI|B Chain B, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
Length = 107
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 10/56 (17%)
Query: 57 RFASSRFEGKPLVNILGKPMIQRTWE----------RSKLATTLDHLVVATDDEKI 102
+F SSR KP +LGK + R WE R+KL + D+ AT I
Sbjct: 35 KFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGI 90
>pdb|2V0H|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2V0I|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2V0J|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-acetylglucosamine-1-
Phosphate Uridyltransferase (glmu)
pdb|2V0K|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2V0L|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2VD4|A Chain A, Structure Of Small-Molecule Inhibitor Of Glmu From
Haemophilus Influenzae Reveals An Allosteric Binding
Site
pdb|2W0V|A Chain A, Crystal Structure Of Glmu From Haemophilus Influenzae In
Complex With Quinazoline Inhibitor 1
pdb|2W0W|A Chain A, Crystal Structure Of Glmu From Haemophilus Influenzae In
Complex With Quinazoline Inhibitor 2
Length = 456
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 66 KPLVNILGKPMIQRTWERS-KLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGT 124
K L I GKPM++ + + +L + HL+ + + + ++ +E GT
Sbjct: 25 KVLHTIAGKPMVKHVIDTAHQLGSENIHLIYGHGGDLMRTHLANEQVNWVLQTEQL--GT 82
Query: 125 ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA 162
+ K + +V + GD PLI E ++ +++A
Sbjct: 83 AHAVQQAAPFFKDNENIVVLYGDAPLITKETLEKLIEA 120
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,200,285
Number of Sequences: 62578
Number of extensions: 196185
Number of successful extensions: 698
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 658
Number of HSP's gapped (non-prelim): 32
length of query: 211
length of database: 14,973,337
effective HSP length: 95
effective length of query: 116
effective length of database: 9,028,427
effective search space: 1047297532
effective search space used: 1047297532
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)