BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028260
(211 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C920|KDSB_ARATH 3-deoxy-manno-octulosonate cytidylyltransferase, mitochondrial
OS=Arabidopsis thaliana GN=KDSB PE=1 SV=1
Length = 290
Score = 349 bits (896), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 175/195 (89%), Positives = 185/195 (94%)
Query: 17 KSWIVHGIVAGAAIAVAVGARAYLGRSKNFRSRVVGIIPARFASSRFEGKPLVNILGKPM 76
K+WIV+GI+AG AIA A+GARAYLGRSK FRSRVVGIIPAR+ASSRFEGKPLV ILGKPM
Sbjct: 12 KTWIVNGILAGTAIAAAIGARAYLGRSKKFRSRVVGIIPARYASSRFEGKPLVQILGKPM 71
Query: 77 IQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEK 136
IQRTWERSKLATTLDH+VVATDDE+IAECC+ FGADVIMTSESCRNGTERCNEAL+KLEK
Sbjct: 72 IQRTWERSKLATTLDHIVVATDDERIAECCRGFGADVIMTSESCRNGTERCNEALEKLEK 131
Query: 137 KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNH 196
KYD+VVNIQGDEPLIEPEIIDGVVKALQ PDAVFSTAVTSLKPED DPNRVKCVVDN
Sbjct: 132 KYDVVVNIQGDEPLIEPEIIDGVVKALQVTPDAVFSTAVTSLKPEDGLDPNRVKCVVDNR 191
Query: 197 GYAIYFSRGLIPYNK 211
GYAIYFSRGLIPYNK
Sbjct: 192 GYAIYFSRGLIPYNK 206
>sp|Q9PKL1|KDSB_CHLMU 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia
muridarum (strain MoPn / Nigg) GN=kdsB PE=3 SV=2
Length = 254
Score = 161 bits (408), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 82/164 (50%), Positives = 113/164 (68%), Gaps = 1/164 (0%)
Query: 48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQ 107
S+ VGI+PAR+ SSRF GKPL ILGK +IQR++E + + +LD +VVATDD++I +
Sbjct: 7 SKRVGILPARWGSSRFPGKPLAKILGKTLIQRSYENALTSRSLDCVVVATDDQRIFDHVV 66
Query: 108 QFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
+FG +MT ESC NGTER EA+ + + +IVVNIQGDEP + P IIDG+V+ L+ P
Sbjct: 67 EFGGLCVMTCESCANGTERVEEAVSQHFPQAEIVVNIQGDEPCLSPSIIDGLVEMLEGNP 126
Query: 168 DAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYN 210
+T VT ++ P+ ++VKCV D G A+YFSR +IP N
Sbjct: 127 AIDIATPVTETVDPDAILTNHKVKCVFDKTGRALYFSRSVIPNN 170
>sp|P0CD75|KDSB_CHLTR 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia
trachomatis (strain D/UW-3/Cx) GN=kdsB PE=3 SV=1
Length = 254
Score = 161 bits (407), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 80/164 (48%), Positives = 112/164 (68%), Gaps = 1/164 (0%)
Query: 48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQ 107
S+ VGI+P+R+ SSRF GKPL ILGK ++QR++E + + +LD +VVATDD++I +
Sbjct: 7 SKKVGILPSRWGSSRFPGKPLAKILGKTLVQRSYENALSSQSLDCVVVATDDQRIFDHVV 66
Query: 108 QFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
+FG +MTS SC NGTER E + + + +IVVNIQGDEP + P +IDG+V L+ P
Sbjct: 67 EFGGLCVMTSTSCANGTERVEEVVSRHFPQAEIVVNIQGDEPCLSPTVIDGLVSTLENNP 126
Query: 168 DAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYN 210
A T+VT + PE ++VKCV D +G A+YFSR IP+N
Sbjct: 127 AADMVTSVTETTDPEAILTDHKVKCVFDKNGKALYFSRSAIPHN 170
>sp|Q3KMI0|KDSB_CHLTA 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia
trachomatis serovar A (strain HAR-13 / ATCC VR-571B)
GN=kdsB PE=3 SV=1
Length = 254
Score = 161 bits (407), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 80/164 (48%), Positives = 112/164 (68%), Gaps = 1/164 (0%)
Query: 48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQ 107
S+ VGI+P+R+ SSRF GKPL ILGK ++QR++E + + +LD +VVATDD++I +
Sbjct: 7 SKKVGILPSRWGSSRFPGKPLAKILGKTLVQRSYENALSSQSLDCVVVATDDQRIFDHVV 66
Query: 108 QFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
+FG +MTS SC NGTER E + + + +IVVNIQGDEP + P +IDG+V L+ P
Sbjct: 67 EFGGLCVMTSTSCANGTERVEEVVSRHFPQAEIVVNIQGDEPCLSPTVIDGLVSTLENNP 126
Query: 168 DAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYN 210
A T+VT + PE ++VKCV D +G A+YFSR IP+N
Sbjct: 127 AADMVTSVTETTDPEAILTDHKVKCVFDKNGKALYFSRSAIPHN 170
>sp|B0BBG2|KDSB_CHLTB 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia
trachomatis serovar L2b (strain UCH-1/proctitis) GN=kdsB
PE=3 SV=1
Length = 254
Score = 160 bits (405), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 80/164 (48%), Positives = 111/164 (67%), Gaps = 1/164 (0%)
Query: 48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQ 107
S+ VGI+P+R+ SSRF GKPL ILGK ++QR++E + + +LD +VVATDD++I +
Sbjct: 7 SKKVGILPSRWGSSRFPGKPLAKILGKTLVQRSYENALSSQSLDCVVVATDDQRIFDHVV 66
Query: 108 QFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
+FG +MTS SC NGTER E + + + +IVVNIQGDEP + P +IDG+V L+ P
Sbjct: 67 EFGGLCVMTSTSCANGTERVEEVVSRHFPQAEIVVNIQGDEPCLSPTVIDGLVSTLENNP 126
Query: 168 DAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYN 210
A T VT + PE ++VKCV D +G A+YFSR IP+N
Sbjct: 127 AADMVTPVTETTDPEAILTDHKVKCVFDKNGKALYFSRSAIPHN 170
>sp|B0B9T2|KDSB_CHLT2 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia
trachomatis serovar L2 (strain 434/Bu / ATCC VR-902B)
GN=kdsB PE=3 SV=1
Length = 254
Score = 160 bits (405), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 80/164 (48%), Positives = 111/164 (67%), Gaps = 1/164 (0%)
Query: 48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQ 107
S+ VGI+P+R+ SSRF GKPL ILGK ++QR++E + + +LD +VVATDD++I +
Sbjct: 7 SKKVGILPSRWGSSRFPGKPLAKILGKTLVQRSYENALSSQSLDCVVVATDDQRIFDHVV 66
Query: 108 QFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
+FG +MTS SC NGTER E + + + +IVVNIQGDEP + P +IDG+V L+ P
Sbjct: 67 EFGGLCVMTSTSCANGTERVEEVVSRHFPQAEIVVNIQGDEPCLSPTVIDGLVSTLENNP 126
Query: 168 DAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYN 210
A T VT + PE ++VKCV D +G A+YFSR IP+N
Sbjct: 127 AADMVTPVTETTDPEAILTDHKVKCVFDKNGKALYFSRSAIPHN 170
>sp|Q254V8|KDSB_CHLFF 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydophila
felis (strain Fe/C-56) GN=kdsB PE=3 SV=1
Length = 254
Score = 158 bits (399), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 110/165 (66%), Gaps = 1/165 (0%)
Query: 46 FRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAEC 105
F S+ VG++PAR+ S RF GKPL NILGK +IQRT+E +TTLD +VVATD+++I +
Sbjct: 6 FASKKVGVLPARWGSVRFTGKPLANILGKSLIQRTYENISQSTTLDKVVVATDNQRIMDH 65
Query: 106 CQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 165
FG D +MTS C NGTER EA+ + + +I+VNIQGDEP ++ ++D +V+ L+
Sbjct: 66 VLDFGGDCVMTSPECANGTERTAEAISRYFPEAEIIVNIQGDEPCLQHTVVDTLVRKLEE 125
Query: 166 APD-AVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPY 209
+P+ V + A + + +VKCV D +G A+YFSR IP+
Sbjct: 126 SPEIQVVTPAAKTTDSHEILTNQKVKCVFDKNGKALYFSRSPIPH 170
>sp|B2RLM4|KDSB_PORG3 3-deoxy-manno-octulosonate cytidylyltransferase OS=Porphyromonas
gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257)
GN=kdsB PE=3 SV=1
Length = 254
Score = 155 bits (391), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 80/166 (48%), Positives = 108/166 (65%), Gaps = 7/166 (4%)
Query: 48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQ 107
+ V+ IIPARFASSRF GKPL ++LGK MIQR ER +A + VVATDDE+I + +
Sbjct: 3 TEVIAIIPARFASSRFPGKPLADMLGKSMIQRVHER--IAGVVPRAVVATDDERIRQAVE 60
Query: 108 QFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
FG +V+MTS C +GTERC EA K+ + IV+N+QGDEP I+ E ID ++ A P
Sbjct: 61 DFGGEVVMTSPECSSGTERCREAFDKVGRGEKIVLNLQGDEPFIQKEQIDLLISAFD-KP 119
Query: 168 DAVFSTAVTSLKPEDAFD----PNRVKCVVDNHGYAIYFSRGLIPY 209
+ +T + +F+ PN K V+D+ GYA+YFSR +IPY
Sbjct: 120 ETDIATLAEVFSSDASFERLNNPNSPKIVLDHGGYALYFSRSVIPY 165
>sp|A6L9D4|KDSB_PARD8 3-deoxy-manno-octulosonate cytidylyltransferase OS=Parabacteroides
distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152)
GN=kdsB PE=3 SV=1
Length = 251
Score = 153 bits (386), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 78/166 (46%), Positives = 108/166 (65%), Gaps = 8/166 (4%)
Query: 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
+ +GIIPAR+AS+RF GKPL ++ GKPMIQR +E+ K LD + VATDD +I +
Sbjct: 3 KFIGIIPARYASTRFPGKPLADMNGKPMIQRVYEQVK--DVLDSVCVATDDIRIENAVKA 60
Query: 109 FGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
FG V+MTS+ R+GT+RC EA QK+ + YD++VNIQGDEP I PE I +K A +
Sbjct: 61 FGGQVVMTSDQHRSGTDRCYEAYQKIGEGYDVIVNIQGDEPFIHPEQIQ-TIKTCFADAN 119
Query: 169 AVFSTAVTSLKPED-----AFDPNRVKCVVDNHGYAIYFSRGLIPY 209
+T V + +D F+PN K V++ + A+YFSR +IPY
Sbjct: 120 TQIATLVKPFRSDDDFESSLFNPNSPKVVLNKNNEAMYFSRSIIPY 165
>sp|Q7MTW6|KDSB_PORGI 3-deoxy-manno-octulosonate cytidylyltransferase OS=Porphyromonas
gingivalis (strain ATCC BAA-308 / W83) GN=kdsB PE=3 SV=1
Length = 254
Score = 153 bits (386), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 79/166 (47%), Positives = 107/166 (64%), Gaps = 7/166 (4%)
Query: 48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQ 107
+ V+ IIPARFASSRF GKPL ++LGK MIQR ER + + VVATDDE+I + +
Sbjct: 3 TEVIAIIPARFASSRFPGKPLADMLGKSMIQRVHER--IVGVVPRAVVATDDERIRQAVE 60
Query: 108 QFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
FG +V+MTS C +GTERC EA K+ + IV+N+QGDEP I+ E ID ++ A P
Sbjct: 61 DFGGEVVMTSPECSSGTERCREAFDKVGRGEKIVLNLQGDEPFIQKEQIDLLISAFD-KP 119
Query: 168 DAVFSTAVTSLKPEDAFD----PNRVKCVVDNHGYAIYFSRGLIPY 209
+ +T + +F+ PN K V+D+ GYA+YFSR +IPY
Sbjct: 120 ETDIATLAEVFSSDVSFERLNNPNSPKIVLDHGGYALYFSRSVIPY 165
>sp|Q6MD00|KDSB_PARUW 3-deoxy-manno-octulosonate cytidylyltransferase OS=Protochlamydia
amoebophila (strain UWE25) GN=kdsB PE=3 SV=1
Length = 259
Score = 153 bits (386), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 82/166 (49%), Positives = 107/166 (64%), Gaps = 3/166 (1%)
Query: 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
+++GIIPAR+ S+RF GKPL +ILGK ++QRT+E S A+ L L+VATDDE+I E +
Sbjct: 9 QIIGIIPARYGSTRFPGKPLASILGKTLLQRTYENSLRASALSDLIVATDDERIFEHVRS 68
Query: 109 FGADVIMTSESCRNGTERCNEALQKLEK--KYDIVVNIQGDEPLIEPEIIDGVVKALQAA 166
F V+MTSE C GT+R E L + +VNIQGDEP + P I+ V+AL
Sbjct: 69 FNGKVVMTSEQCPTGTDRLAEVLSLYPEWMHATAIVNIQGDEPCLNPLTINLAVQALVND 128
Query: 167 PDAVFSTAVTS-LKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
P ST VT L E+A + + VKCV+D G A+YFSR LIP NK
Sbjct: 129 PQGQVSTIVTPLLDEEEAKNSSIVKCVMDQQGNALYFSRALIPSNK 174
>sp|Q04XW6|KDSB_LEPBL 3-deoxy-manno-octulosonate cytidylyltransferase OS=Leptospira
borgpetersenii serovar Hardjo-bovis (strain L550)
GN=kdsB PE=3 SV=1
Length = 246
Score = 151 bits (381), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 80/161 (49%), Positives = 104/161 (64%), Gaps = 2/161 (1%)
Query: 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
+++G+IPAR+ASSRF GKPLV I K MI+ T+ + +T L LVVATDD +I E Q
Sbjct: 3 KILGVIPARYASSRFPGKPLVKIGDKTMIEWTYRNASRSTALSELVVATDDTRIHEVVQG 62
Query: 109 FGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
FG + +MT +GT+R E + L +Y I++NIQGDEP IEPE+IDGV + P+
Sbjct: 63 FGGNSVMTRADHISGTDRIIE-VANLFSEYSIIINIQGDEPGIEPELIDGVAGLKASHPE 121
Query: 169 AVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIP 208
STA L DPNRVK ++D +G AIYFSR LIP
Sbjct: 122 WKMSTAAVPLIDFSHGEDPNRVKVIIDRNGKAIYFSRSLIP 162
>sp|Q04VK9|KDSB_LEPBJ 3-deoxy-manno-octulosonate cytidylyltransferase OS=Leptospira
borgpetersenii serovar Hardjo-bovis (strain JB197)
GN=kdsB PE=3 SV=1
Length = 246
Score = 151 bits (381), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 80/161 (49%), Positives = 104/161 (64%), Gaps = 2/161 (1%)
Query: 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
+++G+IPAR+ASSRF GKPLV I K MI+ T+ + +T L LVVATDD +I E Q
Sbjct: 3 KILGVIPARYASSRFPGKPLVKIGDKTMIEWTYRNASRSTALSELVVATDDTRIHEVVQG 62
Query: 109 FGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
FG + +MT +GT+R E + L +Y I++NIQGDEP IEPE+IDGV + P+
Sbjct: 63 FGGNSVMTRADHISGTDRIIE-VANLFSEYSIIINIQGDEPGIEPELIDGVAGLKASHPE 121
Query: 169 AVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIP 208
STA L DPNRVK ++D +G AIYFSR LIP
Sbjct: 122 WKMSTAAVPLIDFSHGEDPNRVKVIIDRNGKAIYFSRSLIP 162
>sp|Q9Z8U9|KDSB_CHLPN 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia
pneumoniae GN=kdsB PE=3 SV=1
Length = 254
Score = 151 bits (381), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 73/160 (45%), Positives = 106/160 (66%), Gaps = 1/160 (0%)
Query: 51 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFG 110
+G++PAR+ SSR+ GKPL I GK +IQRT+E + ++ LD +VVATDD+ I + FG
Sbjct: 11 IGVLPARWNSSRYPGKPLAKIHGKSLIQRTYENASQSSLLDKIVVATDDQHIIDHVTDFG 70
Query: 111 ADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAV 170
+MTS +C NGTER E +K K +I+VNIQGDEP + E++D +V+ L+++P+A
Sbjct: 71 GYAVMTSPTCSNGTERTGEVARKYFPKAEIIVNIQGDEPCLNSEVVDALVQKLRSSPEAE 130
Query: 171 FSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPY 209
T V + E+ +VKCV D+ G A+YFSR IP+
Sbjct: 131 LVTPVALTTDREEILTEKKVKCVFDSEGRALYFSRSPIPF 170
>sp|Q72UN2|KDSB_LEPIC 3-deoxy-manno-octulosonate cytidylyltransferase OS=Leptospira
interrogans serogroup Icterohaemorrhagiae serovar
copenhageni (strain Fiocruz L1-130) GN=kdsB PE=3 SV=1
Length = 248
Score = 150 bits (380), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 80/161 (49%), Positives = 104/161 (64%), Gaps = 2/161 (1%)
Query: 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
+++G+IPAR+ASSRF GKPL I K MI+ T+ + ++ L LVVATDD +I E Q+
Sbjct: 4 KILGVIPARYASSRFPGKPLAKIGDKTMIEWTYRNASRSSVLSELVVATDDVRIHEVVQK 63
Query: 109 FGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
FG +MTS +GT+R E + +Y I+VNIQGDEP IEPE+IDGV + P+
Sbjct: 64 FGGRSVMTSSDHPSGTDRIIEVANQF-SEYSIIVNIQGDEPGIEPELIDGVASLKASHPE 122
Query: 169 AVFST-AVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIP 208
ST AV L A D NRVK ++D +G AIYFSR LIP
Sbjct: 123 WAMSTAAVPLLDFSHAIDFNRVKVIIDRNGKAIYFSRSLIP 163
>sp|B8FKL0|KDSB_DESAA 3-deoxy-manno-octulosonate cytidylyltransferase
OS=Desulfatibacillum alkenivorans (strain AK-01) GN=kdsB
PE=3 SV=1
Length = 245
Score = 150 bits (380), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 107/165 (64%), Gaps = 2/165 (1%)
Query: 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
+VV IIPAR+ S+RFE KPL I GKPMIQR +ER+ A+++ + VATDDE+I ++
Sbjct: 2 KVVVIIPARYGSTRFEAKPLALIAGKPMIQRVYERAAAASSVTGVAVATDDERIVSAVEK 61
Query: 109 FGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
FG +MTS++CR+GT+R EA + L DIVVN+QGD+P+ +PE ID V L P
Sbjct: 62 FGGKAVMTSDACRSGTDRVFEAGRTLGLTGSDIVVNVQGDQPVFDPECIDEVTAPLIGDP 121
Query: 168 DAVFST-AVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
+T A + + DP VK V D G+A+YFSR IP+++
Sbjct: 122 GTGMTTLAFAIVNEREMTDPKDVKMVFDQDGWALYFSRATIPHDR 166
>sp|Q8F0C3|KDSB_LEPIN 3-deoxy-manno-octulosonate cytidylyltransferase OS=Leptospira
interrogans serogroup Icterohaemorrhagiae serovar Lai
(strain 56601) GN=kdsB PE=3 SV=2
Length = 247
Score = 150 bits (380), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 80/161 (49%), Positives = 104/161 (64%), Gaps = 2/161 (1%)
Query: 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
+++G+IPAR+ASSRF GKPL I K MI+ T+ + ++ L LVVATDD +I E Q+
Sbjct: 3 KILGVIPARYASSRFPGKPLAKIGDKTMIEWTYRNASRSSVLSELVVATDDVRIHEVVQK 62
Query: 109 FGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
FG +MTS +GT+R E + +Y I+VNIQGDEP IEPE+IDGV + P+
Sbjct: 63 FGGRSVMTSSDHPSGTDRIIEVANQF-SEYSIIVNIQGDEPGIEPELIDGVASLKASHPE 121
Query: 169 AVFST-AVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIP 208
ST AV L A D NRVK ++D +G AIYFSR LIP
Sbjct: 122 WAMSTAAVPLLDFSHAIDFNRVKVIIDRNGKAIYFSRSLIP 162
>sp|A5G5T4|KDSB_GEOUR 3-deoxy-manno-octulosonate cytidylyltransferase OS=Geobacter
uraniireducens (strain Rf4) GN=kdsB PE=3 SV=1
Length = 251
Score = 149 bits (377), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 75/161 (46%), Positives = 100/161 (62%), Gaps = 3/161 (1%)
Query: 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
++ IIPAR+AS+RFEGK L +I+GKPM+Q +ER+ A+ + ++VATDDE+IA
Sbjct: 2 KITAIIPARYASTRFEGKALADIMGKPMVQHVYERTAKASLVSEVIVATDDERIAAAVHA 61
Query: 109 FGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
FG MTS GT+R E +L+ DI+VN+QGDEPLIEP +ID +K L
Sbjct: 62 FGGRAEMTSRVHETGTDRLAEVAARLDS--DIIVNVQGDEPLIEPAMIDEAIKPLAEDSS 119
Query: 169 AVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGLIP 208
+ T T +K D PN VK V D GYA+YFSR +P
Sbjct: 120 VMMGTLKTRIKTLHDFLSPNVVKVVTDWEGYALYFSRSPLP 160
>sp|A0LE62|KDSB_SYNFM 3-deoxy-manno-octulosonate cytidylyltransferase OS=Syntrophobacter
fumaroxidans (strain DSM 10017 / MPOB) GN=kdsB PE=3 SV=1
Length = 250
Score = 149 bits (375), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 83/165 (50%), Positives = 107/165 (64%), Gaps = 6/165 (3%)
Query: 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
R+VGIIPAR+ SSRF GKPLV+ILGKPMI+ +ERS A LD L+VATDD +IA
Sbjct: 2 RIVGIIPARYQSSRFPGKPLVDILGKPMIRHVYERSARAGCLDRLIVATDDARIAAAVAG 61
Query: 109 FGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQA-- 165
FG + ++T +GT+R EA + LE DIVVNIQGDEPL+ +I+ +V+ALQ
Sbjct: 62 FGGEALLTRADHASGTDRLAEAARLLELDGADIVVNIQGDEPLVNHRMIEALVEALQCDR 121
Query: 166 -APDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPY 209
P A + SL +D +PN VK V+D A+YFSR IP+
Sbjct: 122 HCPMATLAFPSESL--QDYNNPNVVKVVLDRGLRALYFSRAPIPF 164
>sp|Q822T3|KDSB_CHLCV 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydophila
caviae (strain GPIC) GN=kdsB PE=3 SV=1
Length = 254
Score = 147 bits (371), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 108/169 (63%), Gaps = 1/169 (0%)
Query: 42 RSKNFRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEK 101
+ + F S+ VG++PAR+ S+RF GKPL +ILGK +I+RT+E + LD ++VATDD++
Sbjct: 2 KKQVFASKKVGVLPARWGSARFTGKPLASILGKSLIRRTYENINQSIALDKVIVATDDQR 61
Query: 102 IAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVK 161
I + FG D ++TS C NGTER E + + + +I+VNIQGDEP ++ ++D +V+
Sbjct: 62 IMDHVLDFGGDCVLTSPECANGTERTAETISRYFPEAEIIVNIQGDEPCLQHTVVDALVR 121
Query: 162 ALQAAPDAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPY 209
L+ P+ T V + + +VKCV D +G A+YFSR IP+
Sbjct: 122 KLEEFPEIQIVTPVAKTTDSHEILTNQKVKCVFDKNGKALYFSRSPIPH 170
>sp|Q2NUA2|KDSB_SODGM 3-deoxy-manno-octulosonate cytidylyltransferase OS=Sodalis
glossinidius (strain morsitans) GN=kdsB PE=3 SV=1
Length = 251
Score = 146 bits (368), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 105/162 (64%), Gaps = 2/162 (1%)
Query: 51 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFG 110
+ IIPARFASSR GKPL +I GKPM+ R ER++ A+ D ++VATD + + E ++ G
Sbjct: 4 IAIIPARFASSRLPGKPLADINGKPMVVRVMERAQ-ASGADRVIVATDHQGVVEAVERAG 62
Query: 111 ADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDA 169
+V +T ++GTER E + + + D I+VN+QGDEPLI P+II V L A
Sbjct: 63 GEVYLTRPDHQSGTERLQEVIDRYDFPDDRIIVNVQGDEPLIPPQIILQVADNLAGAEAG 122
Query: 170 VFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
+ + AV E+AF+PN VK VVD GYA+YFSR IP+++
Sbjct: 123 MATLAVPITTAEEAFNPNAVKVVVDARGYALYFSRATIPWDR 164
>sp|A4Y7B5|KDSB_SHEPC 3-deoxy-manno-octulosonate cytidylyltransferase OS=Shewanella
putrefaciens (strain CN-32 / ATCC BAA-453) GN=kdsB PE=3
SV=1
Length = 245
Score = 146 bits (368), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 105/166 (63%), Gaps = 5/166 (3%)
Query: 50 VVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF 109
V+ +IPAR+ SSRF GKPL I GKPMIQ +ER+ LA L ++ VATDDE+I + F
Sbjct: 3 VILLIPARYGSSRFPGKPLAPINGKPMIQHVYERASLAKGLTNIYVATDDERIKATVEGF 62
Query: 110 GADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
G V+MTS +GT+R NEA++ L K D+V+N+QGD+PLI+P I+ ++ + P
Sbjct: 63 GGKVVMTSPDAASGTDRINEAIKLLGLKDDDLVINVQGDQPLIDPTAIEQLINLFERQP- 121
Query: 169 AVFSTAVTS---LKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
F A + D DP +VK V DN+ YA+YFSR IP+ +
Sbjct: 122 GEFEMATLGYEIVNKADIDDPMQVKMVFDNNYYALYFSRSRIPFGR 167
>sp|A1RJ74|KDSB_SHESW 3-deoxy-manno-octulosonate cytidylyltransferase OS=Shewanella sp.
(strain W3-18-1) GN=kdsB PE=3 SV=1
Length = 245
Score = 146 bits (368), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 105/166 (63%), Gaps = 5/166 (3%)
Query: 50 VVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF 109
V+ +IPAR+ SSRF GKPL I GKPMIQ +ER+ LA L ++ VATDDE+I + F
Sbjct: 3 VILLIPARYGSSRFPGKPLAPINGKPMIQHVYERASLAKGLTNIYVATDDERIKATVEGF 62
Query: 110 GADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
G V+MTS +GT+R NEA++ L K D+V+N+QGD+PLI+P I+ ++ + P
Sbjct: 63 GGKVVMTSPDAASGTDRINEAIKLLGLKDDDLVINVQGDQPLIDPTAIEQLINLFERQP- 121
Query: 169 AVFSTAVTS---LKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
F A + D DP +VK V DN+ YA+YFSR IP+ +
Sbjct: 122 GEFEMATLGYEIVNKADIDDPMQVKMVFDNNYYALYFSRSRIPFGR 167
>sp|Q87R14|KDSB_VIBPA 3-deoxy-manno-octulosonate cytidylyltransferase OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=kdsB PE=3 SV=1
Length = 251
Score = 145 bits (367), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 76/161 (47%), Positives = 107/161 (66%), Gaps = 4/161 (2%)
Query: 53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
+IPAR++SSR GKPL +I GKPM+Q +E++ A D +++ATDDE+++ +QFG
Sbjct: 6 VIPARYSSSRLPGKPLADIGGKPMVQWVYEQAMQAGA-DDVIIATDDERVSAAVEQFGGK 64
Query: 113 VIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
V MTS + +GTER E ++K+ D I+VN+QGDEPL+ P II V L AA DA
Sbjct: 65 VCMTSPNHESGTERLAEVVEKMAIPADHIIVNVQGDEPLVPPVIIRQVADNL-AASDAPM 123
Query: 172 STAVTSLKPED-AFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
+T ++ ED F+PN VK V D GYA+YFSR IP+++
Sbjct: 124 ATLAVEIESEDEVFNPNAVKVVADERGYAMYFSRATIPWDR 164
>sp|Q8RFA8|KDSB_FUSNN 3-deoxy-manno-octulosonate cytidylyltransferase OS=Fusobacterium
nucleatum subsp. nucleatum (strain ATCC 25586 / CIP
101130 / JCM 8532 / LMG 13131) GN=kdsB PE=3 SV=1
Length = 245
Score = 145 bits (367), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 105/162 (64%), Gaps = 3/162 (1%)
Query: 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
+ +GIIPAR++S+R EGKPL I G MI+ ++R+K + LD L+VATDDE+I
Sbjct: 2 KFLGIIPARYSSTRLEGKPLKMIEGHTMIEWVYKRAK-KSNLDSLIVATDDERIYNEVIN 60
Query: 109 FGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
FG IMTS++ NGT R E +K+ +YD ++NIQGDEPLIE E+I+ +++ + D
Sbjct: 61 FGGQAIMTSKNHTNGTSRIAEVCEKM-TEYDTIINIQGDEPLIEYEMINSLIETFKENKD 119
Query: 169 AVFSTAVTS-LKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPY 209
+T L E+ +PN VK V D + YAIYFSR +IPY
Sbjct: 120 LKMATLKHKLLNKEEIKNPNNVKVVCDKNDYAIYFSRSVIPY 161
>sp|A6VQ31|KDSB_ACTSZ 3-deoxy-manno-octulosonate cytidylyltransferase OS=Actinobacillus
succinogenes (strain ATCC 55618 / 130Z) GN=kdsB PE=3
SV=1
Length = 259
Score = 145 bits (367), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 77/160 (48%), Positives = 102/160 (63%), Gaps = 2/160 (1%)
Query: 53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
IIPARFASSR GKPL +I GKPMI+ WE+++ + +VVATD+E++ QFG +
Sbjct: 7 IIPARFASSRLPGKPLADIAGKPMIRHVWEKARRSGA-SRVVVATDNEQVKNAVLQFGGE 65
Query: 113 VIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
V MTSE +GTER E ++KL+ D I+VNIQGDEPLI P I+ V L +
Sbjct: 66 VCMTSEKHNSGTERLAEVVEKLDIADDEIIVNIQGDEPLIPPVIVQQVAANLAKYRVNMA 125
Query: 172 STAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
S AV ++ F+PN VK + D GY +YFSR IP+N+
Sbjct: 126 SLAVKIEDVQELFNPNAVKVLTDQAGYVLYFSRAAIPWNR 165
>sp|Q4QPI6|KDSB_HAEI8 3-deoxy-manno-octulosonate cytidylyltransferase OS=Haemophilus
influenzae (strain 86-028NP) GN=kdsB PE=3 SV=1
Length = 254
Score = 145 bits (367), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/160 (47%), Positives = 105/160 (65%), Gaps = 2/160 (1%)
Query: 53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
IIPARFASSR GKPL +I GKPMIQ +E++ L + + +++ATD+E +A+ + FGA+
Sbjct: 6 IIPARFASSRLPGKPLADIAGKPMIQHVFEKA-LQSGANRVIIATDNENVADVAKNFGAE 64
Query: 113 VIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
V MTS + +GTER E ++KL +I+VNIQGDEPLI P I+ V L +
Sbjct: 65 VCMTSVNHNSGTERLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMA 124
Query: 172 STAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
S AV E+ F+PN VK + D GY +YFSR +IPY++
Sbjct: 125 SLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDR 164
>sp|B5YGT5|KDSB_THEYD 3-deoxy-manno-octulosonate cytidylyltransferase
OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 /
DSM 11347 / YP87) GN=kdsB PE=3 SV=1
Length = 255
Score = 145 bits (366), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/165 (43%), Positives = 108/165 (65%), Gaps = 6/165 (3%)
Query: 53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
+IPAR+ S+RF GKPL + KP+IQ +ER+K + +D + VATDD +I + FG
Sbjct: 6 VIPARYGSTRFPGKPLAFLKNKPIIQHVYERAKSSKMIDEVFVATDDSRILHTVESFGGK 65
Query: 113 VIMTSESCRNGTERCNEALQK-LEKKYD-----IVVNIQGDEPLIEPEIIDGVVKALQAA 166
IMTS +GT+R EA+ K L++ Y+ IV+N+QGDEPLI+ E+ID ++ ++
Sbjct: 66 AIMTSSKHPSGTDRIAEAVDKLLQEGYNLQESSIVINLQGDEPLIKKEMIDQLIDLMKNE 125
Query: 167 PDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
D++ + A K +D F+PN VK V D +GYA+YFSR IP+++
Sbjct: 126 NDSIGTLAKRIEKEDDFFNPNIVKVVFDKNGYALYFSRSPIPFDR 170
>sp|A8ZWH0|KDSB_DESOH 3-deoxy-manno-octulosonate cytidylyltransferase OS=Desulfococcus
oleovorans (strain DSM 6200 / Hxd3) GN=kdsB PE=3 SV=1
Length = 248
Score = 145 bits (365), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/165 (43%), Positives = 106/165 (64%), Gaps = 2/165 (1%)
Query: 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
++ IIP+R+ S+RF GKPL I G PMIQR +++ K A + + VATDD +I E +
Sbjct: 2 KIAAIIPSRYGSTRFAGKPLAPIAGIPMIQRVYDQVKQAICVTDIAVATDDRRIVEAVTR 61
Query: 109 FGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
FG + +MTS +CR+GT+R EA +++ DIVVNIQGD+PLI P+ ID + L + P
Sbjct: 62 FGGNALMTSAACRSGTDRAAEAAKQMGLAPEDIVVNIQGDQPLIAPQTIDETLAPLLSDP 121
Query: 168 DAVFSTAVTS-LKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
D +TA + + ++ +P VK V D G+A+YFSR IP+ +
Sbjct: 122 DLGMTTAAFAIMDKQEITNPKDVKMVFDADGFALYFSRSPIPFAR 166
>sp|Q3A370|KDSB_PELCD 3-deoxy-manno-octulosonate cytidylyltransferase OS=Pelobacter
carbinolicus (strain DSM 2380 / Gra Bd 1) GN=kdsB PE=3
SV=1
Length = 250
Score = 145 bits (365), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/163 (45%), Positives = 101/163 (61%), Gaps = 3/163 (1%)
Query: 50 VVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF 109
+ +IPAR+ASSRF GKPL ILGK MIQR +ER+ A +D +VVATDD +IA+ F
Sbjct: 3 ITAVIPARYASSRFPGKPLARILGKTMIQRVYERTAQAACIDRVVVATDDSRIADVVSGF 62
Query: 110 GADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDA 169
G +V MT GT+R E +++ + ++VN+QGDEPLI+P +I+ V L P
Sbjct: 63 GGEVQMTRADHATGTDRLAEVTARIDTQ--LIVNVQGDEPLIDPHMIEAAVAPLSEDPAI 120
Query: 170 VFSTAVTS-LKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
T T L ++ DPN VK V D G+A+YFSR IP+ +
Sbjct: 121 PMGTLKTPLLNWQEYRDPNVVKVVTDRRGFALYFSRAPIPHPR 163
>sp|Q5L5S2|KDSB_CHLAB 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydophila
abortus (strain S26/3) GN=kdsB PE=3 SV=1
Length = 254
Score = 145 bits (365), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 73/167 (43%), Positives = 104/167 (62%), Gaps = 1/167 (0%)
Query: 44 KNFRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIA 103
+ F S+ VG++PAR+ S RF GKPL ILGK +IQRT+E + TLD +VVATDD++I
Sbjct: 4 QTFISKKVGVLPARWGSVRFPGKPLAMILGKSLIQRTYENIIQSETLDKVVVATDDQRIM 63
Query: 104 ECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL 163
+ FG +MTS C NGTER E + + + +I+VNIQGDEP + ++D +V+ L
Sbjct: 64 DHVLDFGGACLMTSPECANGTERMAETVSRYFPEAEIMVNIQGDEPCLRHTVVDALVRKL 123
Query: 164 QAAPDAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPY 209
+ P+ T V + + +VKCV D +G A+YFSR IP+
Sbjct: 124 EEHPEIQMVTPVAQTTDSHEILTNQKVKCVFDKNGKALYFSRSPIPH 170
>sp|P57883|KDSB_PASMU 3-deoxy-manno-octulosonate cytidylyltransferase OS=Pasteurella
multocida (strain Pm70) GN=kdsB PE=3 SV=1
Length = 258
Score = 144 bits (364), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 75/160 (46%), Positives = 105/160 (65%), Gaps = 2/160 (1%)
Query: 53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
IIPAR+AS+R GKPL I GKPMI +E++ + + ++VATD E++A + FGA+
Sbjct: 7 IIPARYASTRLPGKPLAEIAGKPMIAHVFEKA-MQSGAKRVIVATDHEQVATVARGFGAE 65
Query: 113 VIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
V MTSE+ ++GTER E ++KL D I+VNIQGDEPLI P I+ V + L +
Sbjct: 66 VCMTSETHQSGTERLAEVVEKLGIAEDEIIVNIQGDEPLIPPAIVRQVAENLAKYQVKMA 125
Query: 172 STAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
S AV PE+ F+PN VK + D+ GY +YFSR IP+++
Sbjct: 126 SLAVNITDPEELFNPNAVKVLTDHAGYVLYFSRAPIPWHR 165
>sp|A5UFM6|KDSB_HAEIG 3-deoxy-manno-octulosonate cytidylyltransferase OS=Haemophilus
influenzae (strain PittGG) GN=kdsB PE=3 SV=1
Length = 254
Score = 144 bits (364), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 76/160 (47%), Positives = 105/160 (65%), Gaps = 2/160 (1%)
Query: 53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
IIPARFASSR GKPL +I GKPMIQ +E++ L + + +++ATD+E +A+ + FGA+
Sbjct: 6 IIPARFASSRLPGKPLADIAGKPMIQHVFEKA-LQSGANRVIIATDNENVADVVKNFGAE 64
Query: 113 VIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
V MTS + +GTER E ++KL +I+VNIQGDEPLI P I+ V L +
Sbjct: 65 VCMTSVNHNSGTERLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMA 124
Query: 172 STAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
S AV E+ F+PN VK + D GY +YFSR +IPY++
Sbjct: 125 SLAVKIHDGEELFNPNAVKVLTDKDGYVLYFSRSVIPYDR 164
>sp|A5UB81|KDSB_HAEIE 3-deoxy-manno-octulosonate cytidylyltransferase OS=Haemophilus
influenzae (strain PittEE) GN=kdsB PE=3 SV=1
Length = 254
Score = 144 bits (364), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 76/160 (47%), Positives = 104/160 (65%), Gaps = 2/160 (1%)
Query: 53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
IIPARFASSR GKPL +I GKPMIQ +E++ L + +++ATD+E +A+ + FGA+
Sbjct: 6 IIPARFASSRLPGKPLADIAGKPMIQHVFEKA-LQSGASRVIIATDNENVADVAKNFGAE 64
Query: 113 VIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
V MTS + +GTER E ++KL +I+VNIQGDEPLI P I+ V L +
Sbjct: 65 VCMTSVNHNSGTERLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMA 124
Query: 172 STAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
S AV E+ F+PN VK + D GY +YFSR +IPY++
Sbjct: 125 SLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDR 164
>sp|P44490|KDSB_HAEIN 3-deoxy-manno-octulosonate cytidylyltransferase OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=kdsB PE=1 SV=2
Length = 254
Score = 144 bits (363), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 76/160 (47%), Positives = 104/160 (65%), Gaps = 2/160 (1%)
Query: 53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
IIPARFASSR GKPL +I GKPMIQ +E++ L + +++ATD+E +A+ + FGA+
Sbjct: 6 IIPARFASSRLPGKPLADIKGKPMIQHVFEKA-LQSGASRVIIATDNENVADVAKSFGAE 64
Query: 113 VIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
V MTS + +GTER E ++KL +I+VNIQGDEPLI P I+ V L +
Sbjct: 65 VCMTSVNHNSGTERLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMA 124
Query: 172 STAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
S AV E+ F+PN VK + D GY +YFSR +IPY++
Sbjct: 125 SLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDR 164
>sp|Q5QU39|KDSB_IDILO 3-deoxy-manno-octulosonate cytidylyltransferase OS=Idiomarina
loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR)
GN=kdsB PE=3 SV=1
Length = 253
Score = 143 bits (361), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 77/163 (47%), Positives = 104/163 (63%), Gaps = 7/163 (4%)
Query: 53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
+IPAR+ SSR GKPL +I GKPMIQ ER++ A+ ++VATDD +I E +FG
Sbjct: 6 VIPARYGSSRLPGKPLADIAGKPMIQHVVERAE-ASGAAEVIVATDDMRIKEGVDKFGGR 64
Query: 113 VIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKAL---QAAPD 168
V+MTS +GTER E +++L + ++VVN+QGDEP I PEII V L + AP
Sbjct: 65 VMMTSSEHSSGTERLAEVIEQLALAENEVVVNVQGDEPFIPPEIIRQVADNLANQRQAPM 124
Query: 169 AVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
A + +T ED F+PN VK V D GYA+YFSR IP+++
Sbjct: 125 ATLAVPITDA--EDIFNPNTVKVVTDAAGYALYFSRAAIPWDR 165
>sp|B6ES02|KDSB_ALISL 3-deoxy-manno-octulosonate cytidylyltransferase OS=Aliivibrio
salmonicida (strain LFI1238) GN=kdsB PE=3 SV=1
Length = 249
Score = 143 bits (361), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 77/160 (48%), Positives = 102/160 (63%), Gaps = 2/160 (1%)
Query: 53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
IIPAR+ S+R GKPL +I GKPMIQ +E++ A D +++ATDD +I + FG D
Sbjct: 6 IIPARYQSTRLPGKPLADICGKPMIQWVYEQASKAGA-DRVIIATDDSRIEAVVKGFGGD 64
Query: 113 VIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
V MTS + +GTER E + K +IVVN+QGDEPLI P II V K L + +
Sbjct: 65 VCMTSPNHESGTERLAEVIDKCGIASNEIVVNVQGDEPLIPPSIIRQVAKNLADSIAPMA 124
Query: 172 STAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
+ AVT + ED F+PN VK V D GYA+YFSR IP+++
Sbjct: 125 TLAVTIDEEEDVFNPNAVKVVTDAEGYALYFSRAAIPWDR 164
>sp|Q7MJ10|KDSB_VIBVY 3-deoxy-manno-octulosonate cytidylyltransferase OS=Vibrio
vulnificus (strain YJ016) GN=kdsB PE=3 SV=1
Length = 251
Score = 143 bits (360), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 77/162 (47%), Positives = 105/162 (64%), Gaps = 6/162 (3%)
Query: 53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
+IPAR+ S+R GKPL +I GKPM+Q +E++ A D +++ATDD+++A+ FG
Sbjct: 6 VIPARYQSTRLPGKPLADIAGKPMVQWVYEQAIQAGAQD-VIIATDDQRVADAVAVFGGK 64
Query: 113 VIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQA--APDA 169
V MTS + +GTER E +Q + D IVVN+QGDEPLI P II V + L A AP A
Sbjct: 65 VCMTSPNHESGTERLAEVVQLMGIADDHIVVNVQGDEPLIPPSIIRQVAENLAASSAPMA 124
Query: 170 VFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
A+TS E+ F+PN VK V D GYA+YFSR IP+++
Sbjct: 125 TLGVAITS--EEEVFNPNAVKVVTDKEGYALYFSRATIPWDR 164
>sp|B0KF43|KDSB_PSEPG 3-deoxy-manno-octulosonate cytidylyltransferase OS=Pseudomonas
putida (strain GB-1) GN=kdsB PE=3 SV=1
Length = 254
Score = 143 bits (360), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 75/161 (46%), Positives = 101/161 (62%), Gaps = 3/161 (1%)
Query: 53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
+IPAR S+R GKPL+ I GKPM+Q WE+++ + +V+ATDD I E CQ FGA+
Sbjct: 8 VIPARLRSTRLPGKPLLPIAGKPMVQHVWEQARRSGA-SRVVIATDDASILEACQAFGAE 66
Query: 113 VIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
V+MT +GT+R E + L D IVVN+QGDEPLI P IID V L A P+A
Sbjct: 67 VLMTRADHESGTDRLAEVVAHLGLPADAIVVNVQGDEPLIPPVIIDQVAANLAAHPEAGI 126
Query: 172 STAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
+T + +PE F+PN VK V D +G A+ FSR +P+ +
Sbjct: 127 ATLAEPIHEPETVFNPNAVKVVSDKNGLALTFSRAPLPWAR 167
>sp|Q8DAU9|KDSB_VIBVU 3-deoxy-manno-octulosonate cytidylyltransferase OS=Vibrio
vulnificus (strain CMCP6) GN=kdsB PE=3 SV=1
Length = 251
Score = 143 bits (360), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 77/162 (47%), Positives = 105/162 (64%), Gaps = 6/162 (3%)
Query: 53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
+IPAR+ S+R GKPL +I GKPM+Q +E++ A D +++ATDD+++A+ FG
Sbjct: 6 VIPARYQSTRLPGKPLADIAGKPMVQWVYEQAIQAGAQD-VIIATDDQRVADAVAVFGGK 64
Query: 113 VIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQA--APDA 169
V MTS + +GTER E +Q + D IVVN+QGDEPLI P II V + L A AP A
Sbjct: 65 VCMTSPNHESGTERLAEVVQLMGIADDHIVVNVQGDEPLIPPSIIRQVAENLAASSAPMA 124
Query: 170 VFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
A+TS E+ F+PN VK V D GYA+YFSR IP+++
Sbjct: 125 TLGVAITS--EEEVFNPNAVKVVTDKEGYALYFSRATIPWDR 164
>sp|B9M9Q4|KDSB_GEOSF 3-deoxy-manno-octulosonate cytidylyltransferase OS=Geobacter sp.
(strain FRC-32) GN=kdsB PE=3 SV=1
Length = 253
Score = 143 bits (360), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 73/161 (45%), Positives = 98/161 (60%), Gaps = 3/161 (1%)
Query: 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
++ IIPAR+AS+RFEGK L I GKPM+Q +ER+ A+ + ++VATDDE+I +
Sbjct: 2 KITAIIPARYASTRFEGKALAQIQGKPMVQHVYERTLKASLVSEVIVATDDERIVAAVRA 61
Query: 109 FGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
FG MTS S GT+R E +L+ DI+VN+QGDEPLI+P +ID + L
Sbjct: 62 FGGRAEMTSRSHETGTDRLAEVAARLDS--DIIVNVQGDEPLIDPAMIDEAISPLAEDSS 119
Query: 169 AVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGLIP 208
+ T T +K D PN VK V D GYA+YFSR +P
Sbjct: 120 LLMGTLKTRIKSLHDFLSPNVVKVVTDWEGYALYFSRSPLP 160
>sp|B5ETK7|KDSB_VIBFM 3-deoxy-manno-octulosonate cytidylyltransferase OS=Vibrio fischeri
(strain MJ11) GN=kdsB PE=3 SV=1
Length = 249
Score = 143 bits (360), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 76/160 (47%), Positives = 103/160 (64%), Gaps = 2/160 (1%)
Query: 53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
IIPAR+ S+R GKPL +I GKPMIQ +E++ A D +++ATDD +I + FG D
Sbjct: 6 IIPARYQSTRLPGKPLADICGKPMIQWVYEQASKAGA-DRVIIATDDSRIEAVVKGFGGD 64
Query: 113 VIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
V MTS + +GTER E ++K D IVVN+QGDEPLI P II V + L + +
Sbjct: 65 VCMTSPNHESGTERLAEVIEKCGISADEIVVNVQGDEPLIPPSIIQQVAQNLSDSVAPMA 124
Query: 172 STAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
+ AVT + +D F+PN VK V D GYA+YFSR IP+++
Sbjct: 125 TLAVTIDEEDDVFNPNAVKVVTDAEGYALYFSRASIPWDR 164
>sp|Q5E0E9|KDSB_VIBF1 3-deoxy-manno-octulosonate cytidylyltransferase OS=Vibrio fischeri
(strain ATCC 700601 / ES114) GN=kdsB PE=3 SV=1
Length = 249
Score = 143 bits (360), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 76/160 (47%), Positives = 103/160 (64%), Gaps = 2/160 (1%)
Query: 53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
IIPAR+ S+R GKPL +I GKPMIQ +E++ A D +++ATDD +I + FG D
Sbjct: 6 IIPARYQSTRLPGKPLADICGKPMIQWVYEQASKAGA-DRVIIATDDSRIEAVVKGFGGD 64
Query: 113 VIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
V MTS + +GTER E ++K D IVVN+QGDEPLI P II V + L + +
Sbjct: 65 VCMTSPNHESGTERLAEVIEKCGISADEIVVNVQGDEPLIPPSIIQQVAQNLSDSVAPMA 124
Query: 172 STAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
+ AVT + +D F+PN VK V D GYA+YFSR IP+++
Sbjct: 125 TLAVTIDEEDDVFNPNAVKVVTDAEGYALYFSRASIPWDR 164
>sp|A7MV12|KDSB_VIBHB 3-deoxy-manno-octulosonate cytidylyltransferase OS=Vibrio harveyi
(strain ATCC BAA-1116 / BB120) GN=kdsB PE=3 SV=1
Length = 252
Score = 143 bits (360), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/160 (46%), Positives = 103/160 (64%), Gaps = 2/160 (1%)
Query: 53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
+IPAR+ASSR GKPL +I GKPMIQ +E++ A D +++ATDD++++ +QFG
Sbjct: 6 VIPARYASSRLPGKPLADIGGKPMIQWVYEQALQAGAED-VIIATDDKRVSAAAEQFGGK 64
Query: 113 VIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
V MTS + +GTER E ++K+ D IVVN+QGDEPLI P II V L +
Sbjct: 65 VCMTSPNHESGTERLAEVVEKMAIPADHIVVNVQGDEPLIPPSIIRQVADNLAGCDAPMA 124
Query: 172 STAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
+ AV E+ F+PN VK V D GYA+YFSR IP+++
Sbjct: 125 TLAVEIESEEEVFNPNAVKVVADERGYAMYFSRATIPWDR 164
>sp|Q12MB0|KDSB_SHEDO 3-deoxy-manno-octulosonate cytidylyltransferase OS=Shewanella
denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)
GN=kdsB PE=3 SV=1
Length = 245
Score = 142 bits (359), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/167 (44%), Positives = 104/167 (62%), Gaps = 5/167 (2%)
Query: 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
+V +IPARF SSRF GKPL I GKPMIQ +ER+ LA LD + VATDD++I + +
Sbjct: 2 KVTLLIPARFGSSRFPGKPLAPINGKPMIQHVYERASLAKGLDAIYVATDDDRIKDAVEA 61
Query: 109 FGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
FG V+MTS + +GT+R N+A+++L D+V+N+QGD+PLI+P I+ +V + P
Sbjct: 62 FGGKVVMTSAAAASGTDRINDAIEQLGLSDDDLVINLQGDQPLIDPISIEQIVSLFERHP 121
Query: 168 DAVFSTAVTSLKPEDAF---DPNRVKCVVDNHGYAIYFSRGLIPYNK 211
F A + D DP VK V DN A+YFSR IP+ +
Sbjct: 122 -GEFEMATLGFEITDKSELDDPMHVKMVFDNDFNALYFSRARIPFGR 167
>sp|Q2LY80|KDSB_SYNAS 3-deoxy-manno-octulosonate cytidylyltransferase OS=Syntrophus
aciditrophicus (strain SB) GN=kdsB PE=3 SV=1
Length = 248
Score = 142 bits (359), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 105/163 (64%), Gaps = 2/163 (1%)
Query: 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
++V IIP+R++SSRF+GKPL ++ GKPMIQ +ER + + + VATDD +I E ++
Sbjct: 3 KIVCIIPSRYSSSRFQGKPLADLCGKPMIQHVYERVLKSELVSYAAVATDDSRIFEAVRK 62
Query: 109 FGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
FG IMT+ R+GT+R EA+ L+ K DIVVN+QGD+P+ EPE I V + L+ P
Sbjct: 63 FGGKAIMTAARHRSGTDRIAEAVNSLDLKDDDIVVNVQGDQPIFEPEQIAEVTRPLREDP 122
Query: 168 DAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIPY 209
+T + + + E+ PN VK V D + A+YFSR IPY
Sbjct: 123 SLPMATLIYRIVREEEITHPNAVKVVFDRNFNALYFSRATIPY 165
>sp|A9L3N6|KDSB_SHEB9 3-deoxy-manno-octulosonate cytidylyltransferase OS=Shewanella
baltica (strain OS195) GN=kdsB PE=3 SV=1
Length = 245
Score = 142 bits (359), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 103/166 (62%), Gaps = 5/166 (3%)
Query: 50 VVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF 109
V +IPAR+ SSRF GKPL I GKPMIQ +ER+ LA L ++ VATDD++I + F
Sbjct: 3 VTLLIPARYGSSRFPGKPLAPINGKPMIQHVYERASLAKGLTNIYVATDDDRIKAAVEGF 62
Query: 110 GADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
G V+MTS +GT+R N+A+ +L K D+V+N+QGD+PLI+P I+ V+ + P
Sbjct: 63 GGKVVMTSPDAASGTDRINDAINQLGLKDDDLVINLQGDQPLIDPTSIEQVISLFERHP- 121
Query: 169 AVFSTAVTSLK---PEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
F A + + DP VK V DN+ YA+YFSR IP+ +
Sbjct: 122 GEFEMATLGFEIVNKAELDDPMHVKMVFDNNNYALYFSRSRIPFGR 167
>sp|A6WNW2|KDSB_SHEB8 3-deoxy-manno-octulosonate cytidylyltransferase OS=Shewanella
baltica (strain OS185) GN=kdsB PE=3 SV=1
Length = 245
Score = 142 bits (359), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 103/166 (62%), Gaps = 5/166 (3%)
Query: 50 VVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF 109
V +IPAR+ SSRF GKPL I GKPMIQ +ER+ LA L ++ VATDD++I + F
Sbjct: 3 VTLLIPARYGSSRFPGKPLAPINGKPMIQHVYERASLAKGLTNIYVATDDDRIKAAVEGF 62
Query: 110 GADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
G V+MTS +GT+R N+A+ +L K D+V+N+QGD+PLI+P I+ V+ + P
Sbjct: 63 GGKVVMTSPEAASGTDRINDAINQLGLKDDDLVINLQGDQPLIDPTSIEQVISLFERHP- 121
Query: 169 AVFSTAVTSLK---PEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
F A + + DP VK V DN+ YA+YFSR IP+ +
Sbjct: 122 GEFEMATLGFEIVNKTELDDPMHVKMVFDNNNYALYFSRSRIPFGR 167
>sp|A3D555|KDSB_SHEB5 3-deoxy-manno-octulosonate cytidylyltransferase OS=Shewanella
baltica (strain OS155 / ATCC BAA-1091) GN=kdsB PE=3 SV=1
Length = 245
Score = 142 bits (359), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 103/166 (62%), Gaps = 5/166 (3%)
Query: 50 VVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF 109
V +IPAR+ SSRF GKPL I GKPMIQ +ER+ LA L ++ VATDD++I + F
Sbjct: 3 VTLLIPARYGSSRFPGKPLAPINGKPMIQHVYERASLAKGLTNIYVATDDDRIKAAVEGF 62
Query: 110 GADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
G V+MTS +GT+R N+A+ +L K D+V+N+QGD+PLI+P I+ V+ + P
Sbjct: 63 GGKVVMTSPEAASGTDRINDAINQLGLKDDDLVINLQGDQPLIDPTSIEQVISLFERHP- 121
Query: 169 AVFSTAVTSLK---PEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
F A + + DP VK V DN+ YA+YFSR IP+ +
Sbjct: 122 GEFEMATLGFEIVNKAELDDPMHVKMVFDNNNYALYFSRSRIPFGR 167
>sp|B8E9F5|KDSB_SHEB2 3-deoxy-manno-octulosonate cytidylyltransferase OS=Shewanella
baltica (strain OS223) GN=kdsB PE=3 SV=1
Length = 245
Score = 142 bits (359), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 103/166 (62%), Gaps = 5/166 (3%)
Query: 50 VVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF 109
V +IPAR+ SSRF GKPL I GKPMIQ +ER+ LA L ++ VATDD++I + F
Sbjct: 3 VTLLIPARYGSSRFPGKPLAPINGKPMIQHVYERASLAKGLTNIYVATDDDRIKAAVEGF 62
Query: 110 GADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
G V+MTS +GT+R N+A+ +L K D+V+N+QGD+PLI+P I+ V+ + P
Sbjct: 63 GGKVVMTSPEAASGTDRINDAINQLGLKDDDLVINLQGDQPLIDPTSIEQVISLFERHP- 121
Query: 169 AVFSTAVTSLK---PEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 211
F A + + DP VK V DN+ YA+YFSR IP+ +
Sbjct: 122 GEFEMATLGFEIVNKAELDDPMHVKMVFDNNNYALYFSRSRIPFGR 167
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,202,509
Number of Sequences: 539616
Number of extensions: 3014188
Number of successful extensions: 11679
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 95
Number of HSP's that attempted gapping in prelim test: 10337
Number of HSP's gapped (non-prelim): 505
length of query: 211
length of database: 191,569,459
effective HSP length: 112
effective length of query: 99
effective length of database: 131,132,467
effective search space: 12982114233
effective search space used: 12982114233
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)