Query 028261
Match_columns 211
No_of_seqs 116 out of 1072
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 08:46:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028261.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028261hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1691 emp24/gp25L/p24 family 100.0 6.7E-48 1.4E-52 292.4 24.3 207 1-211 2-210 (210)
2 KOG1692 Putative cargo transpo 100.0 9.8E-48 2.1E-52 286.0 18.5 187 15-211 14-201 (201)
3 KOG1690 emp24/gp25L/p24 family 100.0 1.6E-45 3.4E-50 275.2 20.4 204 6-211 5-215 (215)
4 KOG1693 emp24/gp25L/p24 family 100.0 4.4E-42 9.4E-47 257.2 18.8 200 2-209 2-205 (209)
5 KOG3287 Membrane trafficking p 100.0 4.5E-37 9.8E-42 232.8 21.1 184 20-209 34-227 (236)
6 PF01105 EMP24_GP25L: emp24/gp 100.0 2.3E-40 5.1E-45 255.1 0.8 179 21-206 1-183 (183)
7 PF01835 A2M_N: MG2 domain; I 95.4 0.51 1.1E-05 32.1 10.9 68 40-107 13-88 (99)
8 smart00557 IG_FLMN Filamin-typ 93.5 1.2 2.6E-05 30.1 8.8 45 62-106 31-78 (93)
9 PF04151 PPC: Bacterial pre-pe 93.1 0.91 2E-05 28.8 7.3 61 32-102 3-68 (70)
10 PF00630 Filamin: Filamin/ABP2 90.3 2.1 4.5E-05 29.0 7.1 43 63-105 42-91 (101)
11 PF13860 FlgD_ig: FlgD Ig-like 89.8 4.1 8.9E-05 26.7 8.9 54 42-103 12-76 (81)
12 PF05753 TRAP_beta: Translocon 88.2 9.5 0.00021 29.3 10.0 48 15-71 14-61 (181)
13 PF09315 DUF1973: Domain of un 87.6 11 0.00024 28.9 10.4 45 64-108 42-90 (179)
14 PF07495 Y_Y_Y: Y_Y_Y domain; 87.3 5.1 0.00011 24.7 7.9 45 62-108 7-51 (66)
15 PRK12813 flgD flagellar basal 84.5 5.1 0.00011 31.9 6.9 58 41-107 110-176 (223)
16 PRK06655 flgD flagellar basal 84.4 19 0.00041 28.7 10.4 56 42-105 113-179 (225)
17 PRK12812 flgD flagellar basal 83.1 15 0.00032 30.0 9.2 57 42-106 128-195 (259)
18 TIGR03503 conserved hypothetic 82.6 31 0.00067 29.8 11.7 47 62-108 241-290 (374)
19 PF11589 DUF3244: Domain of un 82.5 7.8 0.00017 26.8 6.6 57 41-107 36-96 (106)
20 PRK12633 flgD flagellar basal 80.0 20 0.00044 28.6 8.9 45 62-106 128-183 (230)
21 PF15417 DUF4624: Domain of un 79.6 19 0.0004 25.4 7.4 77 29-118 37-121 (132)
22 PF13473 Cupredoxin_1: Cupredo 78.4 11 0.00023 25.9 6.1 16 85-100 75-90 (104)
23 PRK05842 flgD flagellar basal 77.5 15 0.00033 30.5 7.6 60 42-105 149-221 (295)
24 PHA03376 BARF1; Provisional 77.3 32 0.0007 26.8 9.1 96 1-107 1-111 (221)
25 PF05738 Cna_B: Cna protein B- 77.0 7.8 0.00017 24.2 4.8 44 64-107 3-48 (70)
26 PRK12634 flgD flagellar basal 76.8 23 0.0005 28.2 8.3 45 62-106 121-176 (221)
27 PF10528 PA14_2: GLEYA domain; 76.4 8.6 0.00019 27.1 5.2 47 28-80 56-102 (113)
28 KOG0518 Actin-binding cytoskel 71.4 21 0.00045 34.7 7.7 47 62-108 882-931 (1113)
29 PF13897 GOLD_2: Golgi-dynamic 71.1 6.9 0.00015 28.5 3.6 19 90-108 105-123 (136)
30 PF10779 XhlA: Haemolysin XhlA 70.0 26 0.00056 22.4 9.1 15 141-155 5-19 (71)
31 PRK10378 inactive ferrous ion 68.5 50 0.0011 28.5 8.9 67 21-101 31-103 (375)
32 PRK09619 flgD flagellar basal 67.8 44 0.00096 26.5 8.0 56 42-106 110-173 (218)
33 PF13620 CarboxypepD_reg: Carb 67.4 11 0.00024 24.2 3.9 43 64-106 16-58 (82)
34 PF12690 BsuPI: Intracellular 66.6 15 0.00033 24.2 4.4 21 62-82 23-43 (82)
35 PF14524 Wzt_C: Wzt C-terminal 63.8 16 0.00036 25.9 4.6 44 30-79 25-68 (142)
36 PF13956 Ibs_toxin: Toxin Ibs, 61.4 5 0.00011 18.5 0.9 13 1-13 1-13 (19)
37 COG3017 LolB Outer membrane li 59.9 83 0.0018 24.7 8.9 30 1-30 3-32 (206)
38 KOG3202 SNARE protein TLG1/Syn 59.9 68 0.0015 25.8 7.7 24 135-158 152-175 (235)
39 PRK14081 triple tyrosine motif 57.6 1.7E+02 0.0036 27.5 11.6 58 62-120 415-476 (667)
40 PF09753 Use1: Membrane fusion 57.2 89 0.0019 25.2 8.2 22 181-203 228-249 (251)
41 PF08372 PRT_C: Plant phosphor 55.3 87 0.0019 23.5 7.3 47 135-181 52-98 (156)
42 PF08842 Mfa2: Fimbrillin-A as 55.3 10 0.00023 30.5 2.5 68 39-106 5-78 (283)
43 PF05377 FlaC_arch: Flagella a 55.2 46 0.001 20.3 5.7 30 137-166 2-31 (55)
44 PF07835 COX4_pro_2: Bacterial 54.1 41 0.0009 19.4 4.2 28 168-195 14-41 (44)
45 COG5415 Predicted integral mem 52.9 85 0.0018 24.8 6.9 29 136-164 16-44 (251)
46 PF04728 LPP: Lipoprotein leuc 48.6 62 0.0013 19.8 6.0 26 137-162 5-30 (56)
47 PF07888 CALCOCO1: Calcium bin 48.5 2.2E+02 0.0047 26.0 11.7 78 23-108 14-100 (546)
48 KOG2861 Uncharacterized conser 47.7 50 0.0011 28.7 5.4 54 141-200 339-392 (399)
49 PF05506 DUF756: Domain of unk 47.2 81 0.0018 20.8 6.7 47 20-74 32-81 (89)
50 PF14109 GldH_lipo: GldH lipop 45.5 84 0.0018 22.7 5.7 45 62-106 67-116 (131)
51 PF12669 P12: Virus attachment 45.1 27 0.00059 21.4 2.6 10 200-209 16-25 (58)
52 COG1723 Uncharacterized conser 44.9 35 0.00077 28.6 4.0 54 140-199 271-324 (331)
53 COG5415 Predicted integral mem 43.7 1.6E+02 0.0035 23.3 8.9 20 138-157 11-30 (251)
54 PRK15396 murein lipoprotein; P 43.0 95 0.0021 20.4 5.7 28 136-163 26-53 (78)
55 PRK13211 N-acetylglucosamine-b 42.7 2.5E+02 0.0055 25.2 10.5 47 62-108 340-391 (478)
56 PRK09810 entericidin A; Provis 42.0 29 0.00062 19.8 2.1 19 1-19 1-19 (41)
57 PRK09973 putative outer membra 40.4 1.1E+02 0.0024 20.4 5.6 45 136-180 25-69 (85)
58 PF05015 Plasmid_killer: Plasm 39.4 70 0.0015 21.5 4.3 34 72-107 49-82 (93)
59 PF04678 DUF607: Protein of un 38.9 1.7E+02 0.0038 22.2 9.0 44 142-185 57-100 (180)
60 PF11912 DUF3430: Protein of u 38.7 32 0.0007 26.6 2.9 33 2-34 1-35 (212)
61 PF00517 GP41: Retroviral enve 38.2 1.6E+02 0.0034 23.1 6.6 58 139-196 105-168 (204)
62 PHA02650 hypothetical protein; 38.0 43 0.00094 21.9 2.8 29 175-203 44-72 (81)
63 PF10805 DUF2730: Protein of u 37.9 76 0.0016 22.0 4.3 24 132-155 32-55 (106)
64 PF07125 DUF1378: Protein of u 37.7 62 0.0014 19.6 3.2 28 179-208 8-35 (59)
65 PF01519 DUF16: Protein of unk 36.9 1.1E+02 0.0025 21.1 4.8 36 144-179 62-97 (102)
66 COG4467 Regulator of replicati 36.2 1.1E+02 0.0024 21.4 4.7 43 136-178 9-51 (114)
67 PF09323 DUF1980: Domain of un 36.2 51 0.0011 25.2 3.5 33 175-207 27-59 (182)
68 PF13850 ERGIC_N: Endoplasmic 35.5 1.2E+02 0.0026 20.5 4.9 33 39-76 58-90 (96)
69 PF13544 N_methyl_2: Type IV p 35.4 42 0.00092 17.6 2.1 21 175-195 9-29 (31)
70 PF05404 TRAP-delta: Transloco 34.4 2.1E+02 0.0045 21.8 8.7 58 42-106 41-104 (167)
71 PRK02710 plastocyanin; Provisi 34.4 1.6E+02 0.0035 20.6 8.6 18 85-102 87-105 (119)
72 PRK01844 hypothetical protein; 33.8 1.2E+02 0.0026 19.6 4.3 26 182-207 6-31 (72)
73 PHA03054 IMV membrane protein; 33.7 54 0.0012 21.0 2.7 26 177-202 45-70 (72)
74 PF14257 DUF4349: Domain of un 33.6 1.5E+02 0.0032 24.0 6.0 26 139-164 166-191 (262)
75 PRK00523 hypothetical protein; 33.3 1.3E+02 0.0028 19.4 4.4 27 181-207 6-32 (72)
76 PRK14081 triple tyrosine motif 33.3 4.2E+02 0.0091 25.0 10.0 43 64-106 224-266 (667)
77 PHA02819 hypothetical protein; 32.8 66 0.0014 20.6 2.9 27 177-203 43-69 (71)
78 PF07210 DUF1416: Protein of u 32.7 1.5E+02 0.0033 19.7 8.9 62 38-107 4-65 (85)
79 PHA02975 hypothetical protein; 32.6 81 0.0018 20.1 3.3 27 177-203 41-67 (69)
80 PF08139 LPAM_1: Prokaryotic m 31.4 48 0.001 16.7 1.7 15 1-15 6-20 (25)
81 TIGR02542 B_forsyth_147 Bacter 31.3 32 0.0007 24.4 1.5 14 95-108 116-129 (145)
82 KOG2862 Alanine-glyoxylate ami 30.8 2.4E+02 0.0051 24.1 6.6 87 95-184 211-303 (385)
83 PRK04517 hypothetical protein; 30.8 2.7E+02 0.0058 22.0 7.6 28 2-29 1-30 (216)
84 PF03908 Sec20: Sec20; InterP 30.2 1.7E+02 0.0037 19.5 6.3 9 176-184 69-77 (92)
85 PF09889 DUF2116: Uncharacteri 29.8 1.4E+02 0.003 18.4 5.0 12 176-187 37-48 (59)
86 PF05739 SNARE: SNARE domain; 29.8 1.3E+02 0.0028 18.0 6.0 43 137-179 6-48 (63)
87 PF14584 DUF4446: Protein of u 29.5 1.9E+02 0.0041 21.5 5.5 44 135-178 39-82 (151)
88 PF10648 Gmad2: Immunoglobulin 29.4 1.6E+02 0.0034 19.7 4.6 36 41-80 11-46 (88)
89 PF08114 PMP1_2: ATPase proteo 29.1 95 0.0021 17.6 2.8 24 186-209 15-38 (43)
90 KOG2678 Predicted membrane pro 29.0 3E+02 0.0066 22.0 9.0 31 177-207 212-242 (244)
91 PF00801 PKD: PKD domain; Int 28.9 1.4E+02 0.0031 18.2 5.1 47 62-108 11-64 (69)
92 PHA02844 putative transmembran 28.5 83 0.0018 20.4 2.9 25 178-202 46-70 (75)
93 PF04234 CopC: CopC domain; I 28.5 1.6E+02 0.0034 19.8 4.6 45 64-108 34-84 (97)
94 PF13464 DUF4115: Domain of un 28.4 1.6E+02 0.0035 18.7 5.0 41 64-106 8-48 (77)
95 PRK06798 fliD flagellar cappin 28.2 4E+02 0.0086 23.6 8.1 14 196-209 425-438 (440)
96 PF00957 Synaptobrevin: Synapt 27.5 1.8E+02 0.004 19.0 10.0 32 150-181 32-63 (89)
97 KOG0518 Actin-binding cytoskel 27.4 2.7E+02 0.0058 27.6 7.1 44 62-105 389-436 (1113)
98 PF03554 Herpes_UL73: UL73 vir 26.9 1.2E+02 0.0026 20.1 3.6 26 176-201 46-71 (82)
99 PF05371 Phage_Coat_Gp8: Phage 26.8 1.2E+02 0.0026 18.2 3.1 22 186-207 30-51 (52)
100 PF05388 Carbpep_Y_N: Carboxyp 26.8 31 0.00067 24.4 0.8 23 2-24 1-23 (113)
101 TIGR02052 MerP mercuric transp 26.8 79 0.0017 19.8 2.8 20 2-21 1-20 (92)
102 cd05860 Ig4_SCFR Fourth immuno 26.3 1E+02 0.0022 21.3 3.3 24 93-118 75-98 (101)
103 PF06624 RAMP4: Ribosome assoc 26.1 33 0.00072 21.5 0.8 23 179-201 38-60 (63)
104 PF13715 DUF4480: Domain of un 25.3 1.9E+02 0.0041 18.5 8.3 39 64-107 17-55 (88)
105 PF09116 gp45-slide_C: gp45 sl 25.2 2.1E+02 0.0045 20.2 4.7 41 66-106 25-73 (112)
106 PRK10301 hypothetical protein; 25.2 2.6E+02 0.0056 19.9 9.3 45 64-108 60-111 (124)
107 COG3915 Uncharacterized protei 24.9 1.5E+02 0.0032 21.8 3.9 34 2-35 4-39 (155)
108 PF06196 DUF997: Protein of un 24.7 1.7E+02 0.0038 19.2 4.1 27 181-207 45-71 (80)
109 PF07680 DoxA: TQO small subun 24.6 2.8E+02 0.0061 20.2 6.3 44 62-106 46-98 (133)
110 PF04136 Sec34: Sec34-like fam 24.5 3E+02 0.0065 20.5 7.1 50 140-189 33-82 (157)
111 PF02974 Inh: Protease inhibit 24.4 2E+02 0.0043 19.5 4.5 33 66-98 63-95 (99)
112 COG1382 GimC Prefoldin, chaper 24.4 2.2E+02 0.0047 20.4 4.7 39 137-175 72-110 (119)
113 KOG0256 1-aminocyclopropane-1- 23.9 47 0.001 29.1 1.5 19 89-107 427-445 (471)
114 PF02083 Urotensin_II: Urotens 23.8 27 0.0006 14.2 0.1 8 29-36 2-9 (12)
115 TIGR02962 hdxy_isourate hydrox 23.8 2.6E+02 0.0057 19.6 6.1 14 94-107 56-69 (112)
116 PF07963 N_methyl: Prokaryotic 23.7 78 0.0017 15.0 1.6 12 182-193 3-14 (20)
117 PRK14156 heat shock protein Gr 23.5 3.4E+02 0.0074 20.8 6.4 37 136-172 35-71 (177)
118 KOG3491 Predicted membrane pro 23.3 1E+02 0.0022 19.0 2.5 21 180-200 39-59 (65)
119 PF06156 DUF972: Protein of un 23.0 2.7E+02 0.0059 19.4 5.9 25 137-161 10-34 (107)
120 KOG3091 Nuclear pore complex, 22.7 3.3E+02 0.0071 24.5 6.4 47 140-186 353-399 (508)
121 PF09577 Spore_YpjB: Sporulati 22.7 4.1E+02 0.0088 21.4 8.3 22 179-200 198-219 (232)
122 PRK14155 heat shock protein Gr 22.7 3.9E+02 0.0084 21.1 7.1 36 137-172 22-57 (208)
123 PRK14149 heat shock protein Gr 22.5 3.7E+02 0.0081 20.9 6.5 37 135-171 43-79 (191)
124 PF10805 DUF2730: Protein of u 22.5 90 0.0019 21.6 2.5 27 180-206 7-33 (106)
125 PRK12618 flgA flagellar basal 22.3 45 0.00098 24.5 1.0 12 1-12 1-12 (141)
126 PF15188 CCDC-167: Coiled-coil 22.3 2.3E+02 0.005 18.9 4.3 21 139-159 40-60 (85)
127 cd09011 Glo_EDI_BRP_like_23 Th 22.0 76 0.0016 21.6 2.1 15 65-79 102-116 (120)
128 KOG3385 V-SNARE [Intracellular 22.0 2.3E+02 0.0049 20.2 4.3 25 166-190 85-109 (118)
129 PF01606 Arteri_env: Arterivir 22.0 3.7E+02 0.008 20.6 6.5 29 25-53 25-56 (214)
130 PF01166 TSC22: TSC-22/dip/bun 22.0 2.1E+02 0.0045 17.7 3.9 32 132-163 11-42 (59)
131 PF07172 GRP: Glycine rich pro 21.6 62 0.0013 22.1 1.5 7 6-12 7-13 (95)
132 PF10754 DUF2569: Protein of u 21.5 3.3E+02 0.0072 19.9 6.2 30 181-210 54-83 (149)
133 PF12276 DUF3617: Protein of u 21.1 56 0.0012 24.1 1.3 29 2-30 1-31 (162)
134 PF07116 DUF1372: Protein of u 20.9 1.4E+02 0.0031 20.6 3.1 30 173-202 6-35 (104)
135 PF15432 Sec-ASP3: Accessory S 20.9 3.3E+02 0.0072 19.6 8.7 43 65-108 72-115 (128)
136 PF03408 Foamy_virus_ENV: Foam 20.7 3.3E+02 0.0071 26.3 6.2 43 161-203 43-85 (981)
137 COG5074 t-SNARE complex subuni 20.7 3.2E+02 0.0069 22.1 5.4 18 178-195 250-267 (280)
138 PRK10803 tol-pal system protei 20.6 2E+02 0.0044 23.4 4.6 38 136-173 62-99 (263)
139 PHA03163 hypothetical protein; 20.6 2.7E+02 0.0059 18.7 4.3 25 176-200 55-79 (92)
140 smart00338 BRLZ basic region l 20.5 2E+02 0.0044 17.6 3.6 30 133-162 24-53 (65)
141 PHA02665 hypothetical protein; 20.4 74 0.0016 25.2 1.9 29 26-54 25-53 (322)
142 PF02460 Patched: Patched fami 20.2 2.9E+02 0.0062 26.4 6.1 45 163-207 730-774 (798)
143 PF13314 DUF4083: Domain of un 20.1 82 0.0018 19.4 1.6 20 132-151 36-55 (58)
No 1
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.7e-48 Score=292.38 Aligned_cols=207 Identities=53% Similarity=0.885 Sum_probs=190.8
Q ss_pred ChhHHHHHHHHHHHHhhcceeEEEEEeCCCcceEEEEcCCCcEEEEEEEEecCCCCCCCCCCceEEEEEEcCCCCeEEee
Q 028261 1 MIRLTLTLVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYA 80 (211)
Q Consensus 1 ~~~~~~~~~~~l~~l~~~~~~l~f~l~~g~~~Cf~~~v~~~~~i~~~y~v~~~~~~~~~~~~~~i~~~v~~p~g~~i~~~ 80 (211)
|++.+..+++++++++..+.|+.|+++++.+.|+.|++.++..+.|.|.+.++..+. .+.+++.|+||.|+.+++.
T Consensus 2 ~~~~~~~~l~i~~~~~~~~~a~~f~v~~~~~kCi~EeI~~n~lv~g~y~i~~~~~~~----~~~~~~~Vts~~G~~~~~~ 77 (210)
T KOG1691|consen 2 MMPCLSLLLLIFLLLLPLVHALRFDVPSKTTKCISEEIHENVLVVGDYEIINPNGDH----SHKLSVKVTSPYGNNLHSK 77 (210)
T ss_pred ccHhHHHHHHHHHHHhhhhheEEEEecCCCCEeehhhhccCeEEEEEEEEecCCCCc----cceEEEEEEcCCCceeehh
Confidence 455666666677778899999999999999999999999999999999999876321 1579999999999999999
Q ss_pred eccceeeEEEEeeecccEEEEEEecC--CCCceeEEEEEEEeeCccccCchhhhhcCCCChHHHHHHHHHHHHHHHHHHH
Q 028261 81 DRVDSGQFAFTAAEAGDYMACFWAVD--HSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEM 158 (211)
Q Consensus 81 ~~~~~g~~~f~~~~~G~y~~Cf~n~~--~~~~~~v~v~~~~~~g~~~~~~~~~ak~e~~~~l~~~l~~l~~~l~~i~~~q 158 (211)
++.++|+|+|++.++|.|..||.+.. ..+.....|+||++.|.+++||+++||+++++|+|-++.+|++.+..|.++.
T Consensus 78 env~~gqFaFta~e~~~y~~Cf~~~~~~~~p~~~~~I~ld~k~Gv~akdw~~IAKkeklep~E~elrrLed~~~sI~~e~ 157 (210)
T KOG1691|consen 78 ENVTKGQFAFTAEESGMYEACFTADVPGHKPETKRSIDLDWKTGVEAKDWDSIAKKEKLEPLEVELRRLEDLVESIHEEM 157 (210)
T ss_pred hccccceEEEEeccCCcEEEEEecccCCCCCCcceEEEEEeeccccccchHHHHhhhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999943 3344568999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 028261 159 FYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWHLKTFFEKKKLI 211 (211)
Q Consensus 159 ~~~~~re~~~~~~~es~~~rv~~~sii~~~vli~~~~~Qv~~lk~fF~~KklI 211 (211)
.|++.||+++|+++|+||+|+.|+|++-+++++++++||++|||+||++||+|
T Consensus 158 ~YLr~REeemr~~nesTNsrv~~fSi~Sl~v~~~va~~QvlyLK~fF~kKKLI 210 (210)
T KOG1691|consen 158 YYLREREEEMRNTNESTNSRVAWFSILSLVVLLSVAGWQVLYLKRFFQKKKLI 210 (210)
T ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999998
No 2
>KOG1692 consensus Putative cargo transport protein EMP24 (p24 protein family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.8e-48 Score=286.01 Aligned_cols=187 Identities=25% Similarity=0.433 Sum_probs=169.1
Q ss_pred HhhcceeEEEEEeCCCcceEEEEcCCCcEEEEEEEEecCCCCCCCCCCceEEEEEEcCCCCeEEeeeccceeeEEEEeee
Q 028261 15 LSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAE 94 (211)
Q Consensus 15 l~~~~~~l~f~l~~g~~~Cf~~~v~~~~~i~~~y~v~~~~~~~~~~~~~~i~~~v~~p~g~~i~~~~~~~~g~~~f~~~~ 94 (211)
|+..+.+..+.+++.+++||+|++.+|+.++++|+|.+++ ..++++.|++|+|+.+++..+...|+|+|+++.
T Consensus 14 L~~~~~~~~is~~ah~eeCf~e~~~~gd~~~vsF~v~~gg-------~~~vd~~I~gP~~~~i~~~~~~ssgk~tF~a~~ 86 (201)
T KOG1692|consen 14 LFISAAGYGISLDAHEEECFFENLEEGDKLSVSFEVIDGG-------FLGVDVEITGPDGKIIHKGKRESSGKYTFTAPK 86 (201)
T ss_pred HHHHhhheeEEEccchhhhHhhhhccCCEEEEEEEEecCC-------ccceeEEEECCCCchhhhcccccCceEEEEecC
Confidence 3344889999999999999999999999999999999875 579999999999999999998899999999999
Q ss_pred cccEEEEEEecCCC-CceeEEEEEEEeeCccccCchhhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028261 95 AGDYMACFWAVDHS-PQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNR 173 (211)
Q Consensus 95 ~G~y~~Cf~n~~~~-~~~~v~v~~~~~~g~~~~~~~~~ak~e~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~e 173 (211)
+|.|++||.|..+. .++. |.|+++.|.... .++.++.++.+++++.+.+|...+..++.||+|+..|+++||.++|
T Consensus 87 ~G~Y~fCF~N~~s~mtpk~--V~F~ihvg~~~~-~~d~~~d~~~~~L~~~I~eL~~al~~Vk~EQeY~~~Rer~Hr~~nE 163 (201)
T KOG1692|consen 87 KGTYTFCFSNKMSTMTPKT--VMFTIHVGHAPQ-RDDLAKDAHQNKLEEMIRELSEALTSVKHEQEYMEARERIHRNTNE 163 (201)
T ss_pred CceEEEEecCCCCCCCceE--EEEEEEEeeccc-cchhcccccccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 99999999999885 3554 556666676543 3456788888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 028261 174 VTNSRMAWFSGFSLFICIAVAGMQLWHLKTFFEKKKLI 211 (211)
Q Consensus 174 s~~~rv~~~sii~~~vli~~~~~Qv~~lk~fF~~KklI 211 (211)
+|++||.|||+.|.+++|+++++|||||||||+.|++.
T Consensus 164 ntn~RVv~wsife~~vLi~~s~~QVyYLkRfFEvkrvv 201 (201)
T KOG1692|consen 164 NTNSRVVLWSIFEALVLIAMSVLQVYYLKRFFEVKRVV 201 (201)
T ss_pred cccceeehHHHHHHHHHHHHHHHHHHHHHHhheeeecC
Confidence 99999999999999999999999999999999999863
No 3
>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-45 Score=275.20 Aligned_cols=204 Identities=26% Similarity=0.416 Sum_probs=180.1
Q ss_pred HHHHHHHHHHhhcceeEEEEEeCCCcceEEEEcCCCcEEEEEEEEecCCCC--CC-CCCCceEEEEEEcCCCC--eEEee
Q 028261 6 LTLVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDG--HP-LPESHKLTVRVTSAYGN--SYHYA 80 (211)
Q Consensus 6 ~~~~~~l~~l~~~~~~l~f~l~~g~~~Cf~~~v~~~~~i~~~y~v~~~~~~--~~-~~~~~~i~~~v~~p~g~--~i~~~ 80 (211)
.-++++|++|+..+.|++|++.+++++||++++|+|+.+.|+|.+.--+.. .| ...+.++.+.|.+|.++ +|.++
T Consensus 5 ~~~~lll~~l~~~~~a~yFy~~~~e~KCF~eelpk~tmv~G~yk~qlyd~~~~~y~~~p~~gm~VeV~e~fdnnh~Vl~q 84 (215)
T KOG1690|consen 5 MRLLLLLLLLATQVQALYFYIAGTEKKCFIEELPKGTMVTGNYKAQLYDDQLKGYGSYPNIGMHVEVKETFDNNHVVLSQ 84 (215)
T ss_pred HHHHHHHHHHHhhccEEEEEecCCcccchhhhCCCCcEEEeeeeeeeecchhcccccCCCceEEEEeecCCCCceEEEee
Confidence 345667777899999999999999999999999999999999998643322 12 22256899999999877 89999
Q ss_pred eccceeeEEEEeeecccEEEEEEecCCC--CceeEEEEEEEeeCccccCchhhhhcCCCChHHHHHHHHHHHHHHHHHHH
Q 028261 81 DRVDSGQFAFTAAEAGDYMACFWAVDHS--PQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEM 158 (211)
Q Consensus 81 ~~~~~g~~~f~~~~~G~y~~Cf~n~~~~--~~~~v~v~~~~~~g~~~~~~~~~ak~e~~~~l~~~l~~l~~~l~~i~~~q 158 (211)
+..++|+|+|++..+|+|+||+....+. .+...+|++|+++|.++.++.. .++..+.++..+..|.+++..|+.||
T Consensus 85 ~~ss~G~ftFta~~~GeH~IC~~s~s~awf~~aklRvhld~qvG~~a~l~a~--~ke~~k~l~~Rv~~L~~~~~~IrkEQ 162 (215)
T KOG1690|consen 85 QYSSEGDFTFTALTPGEHRICIQSNSTAWFNGAKLRVHLDIQVGDHANLDAQ--IKETDKLLEGRVRQLNSRLESIRKEQ 162 (215)
T ss_pred cCCCCCceEEEccCCCceEEEEecccchhhccceEEEEEEEeeCchhhhhhh--hhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988764 4567899999999998877644 45667788889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 028261 159 FYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWHLKTFFEKKKLI 211 (211)
Q Consensus 159 ~~~~~re~~~~~~~es~~~rv~~~sii~~~vli~~~~~Qv~~lk~fF~~KklI 211 (211)
.++|.||+++|++.||+|+|++||+++|+++++++|+||+.+||+||.+||++
T Consensus 163 ~~~R~RE~~FR~tSES~NsRvm~Wsv~Q~vvL~~tc~wQmrhL~~FFvkqKlv 215 (215)
T KOG1690|consen 163 NLQREREETFRDTSESANSRVMWWSVAQLVVLLVTCIWQMRHLKSFFVKQKLV 215 (215)
T ss_pred HHHHHHHHHHHhhhhhhcceeeehhHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999985
No 4
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.4e-42 Score=257.25 Aligned_cols=200 Identities=22% Similarity=0.376 Sum_probs=171.2
Q ss_pred hhHHHHH--HHHHHHHhhcceeEEEEEeCCCcceEEEEcCCCcE-EEEEEEEecCCCCCCCCCCceEEEEEEcCCCCeEE
Q 028261 2 IRLTLTL--VLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSM-TVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYH 78 (211)
Q Consensus 2 ~~~~~~~--~~~l~~l~~~~~~l~f~l~~g~~~Cf~~~v~~~~~-i~~~y~v~~~~~~~~~~~~~~i~~~v~~p~g~~i~ 78 (211)
.++...+ +++++++++.+..++|+||++.++|||+++++++. ++.+|.|..|+ +++|++.|++|+|++|+
T Consensus 2 ~~~~~v~~~~~lla~~~s~a~elTfeLp~~aKqC~Y~d~~~~~~~~~~~fqV~tGG-------~fDVD~~I~aPdgkvI~ 74 (209)
T KOG1693|consen 2 PTLIVVLFQLLLLALLFSEASELTFELPDNAKQCFYEDLKKDDDTTSFEFQVQTGG-------HFDVDYDIEAPDGKVIY 74 (209)
T ss_pred ceeHHHHHHHHHHHHHhhhcccEEEEcCCcchhheeeecccCCceEEEEEEEEeCC-------ceeeEEEEECCCCCEEe
Confidence 3444444 45556667778899999999999999999999765 99999999886 68999999999999999
Q ss_pred eeeccceeeEEEEeeecccEEEEEEecCCCCceeEEEEEEEeeCccccCchhh-hhcCCCChHHHHHHHHHHHHHHHHHH
Q 028261 79 YADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNV-AKKGSVDVMELELKKLYDTVSSIHQE 157 (211)
Q Consensus 79 ~~~~~~~g~~~f~~~~~G~y~~Cf~n~~~~~~~~v~v~~~~~~g~~~~~~~~~-ak~e~~~~l~~~l~~l~~~l~~i~~~ 157 (211)
+.+++..+.|.|++...|+|++||+|..+. .....+.++++.|.+.+-.+.. ++....+.++..+..++..|+.|.+.
T Consensus 75 ~~~kk~~~~~~f~ae~~G~Y~fCFsN~fst-f~~Kiv~~~~q~~~~~~~~~~~~~~~~~~~~mena~~~I~~~L~~I~~~ 153 (209)
T KOG1693|consen 75 SEKKKRYDSFLFKAEGKGEYTFCFSNEFST-FSHKIVYMDFQVGEEPPLHPAVSNRDTALTQMENAIVEIHRALNKIDDT 153 (209)
T ss_pred eccccccccEEEEEecceEEEEEecCcccc-ccceEeeehhhhccccccCccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999899999999999999999999999877 3344567777777543322222 12223578999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 028261 158 MFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWHLKTFFEKKK 209 (211)
Q Consensus 158 q~~~~~re~~~~~~~es~~~rv~~~sii~~~vli~~~~~Qv~~lk~fF~~Kk 209 (211)
|.|+|.||.|.+.+++|+++|++|||++++++++++++.|+..||.||..|+
T Consensus 154 q~y~R~RE~rn~~tv~st~~Rv~~~Sl~e~~~vv~iSi~Qv~ilk~fFt~~r 205 (209)
T KOG1693|consen 154 QTYYRLREARNRSTVESTNSRVTWWSLLEIIAVVVISIAQVFILKFFFTDRR 205 (209)
T ss_pred HHHHHHHHhcCccchhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999999999999999876
No 5
>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.5e-37 Score=232.79 Aligned_cols=184 Identities=18% Similarity=0.320 Sum_probs=156.1
Q ss_pred eeEEEEEeCCCcceEEEEcCCCcEEEEEEEEecCCCCCCCCCCceEEEEEEcCCCCeEEeeeccceeeEEEEeeecccEE
Q 028261 20 QSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYM 99 (211)
Q Consensus 20 ~~l~f~l~~g~~~Cf~~~v~~~~~i~~~y~v~~~~~~~~~~~~~~i~~~v~~p~g~~i~~~~~~~~g~~~f~~~~~G~y~ 99 (211)
-.+++.||||+++|||+.++.+..+..+|.|++|.+ +.+|++.+.+|.|.++.+.+.+.+|.+++.+.++|.|+
T Consensus 34 ~dftv~ipAGk~eCf~Q~v~~~~tle~eyQVi~G~G------Dl~i~Ftl~~P~G~~lv~~q~k~dg~ht~e~~e~GdY~ 107 (236)
T KOG3287|consen 34 YDFTVMIPAGKTECFYQPVPQGATLEVEYQVIDGAG------DLDIDFTLLNPAGEVLVSDQRKVDGVHTVEVTETGDYQ 107 (236)
T ss_pred cceEEEecCCCceeeeeeccCCeEEEEEEEEEecCC------ccceeeEEeCCCccEEeecccccCceeEeeccCCcceE
Confidence 459999999999999999999999999999998831 57999999999999999988889999999999999999
Q ss_pred EEEEecCCC-CceeEEEEEEEe-eCccc---cCchhhhhcC-----CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028261 100 ACFWAVDHS-PQTTVTIDFDWR-TGVQA---KDWSNVAKKG-----SVDVMELELKKLYDTVSSIHQEMFYLREREEEMQ 169 (211)
Q Consensus 100 ~Cf~n~~~~-~~~~v~v~~~~~-~g~~~---~~~~~~ak~e-----~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~ 169 (211)
+||+|+.++ ..|.|-+++-+. .|+.. ..|++.++.. .++.+++.++.++..+..+...|..+|.||.|+|
T Consensus 108 ~CfDNsFS~fs~K~Vffeli~~~~g~~~e~~e~w~k~~e~~~~Ld~kl~di~~~i~~i~~nl~k~~~~q~~lRa~EaRDr 187 (236)
T KOG3287|consen 108 VCFDNSFSTFSRKLVFFELILDAHGEFYEGDETWHKYKERTEQLDVKLDDIEDSIGTIKNNLNKMWQYQALLRAREARDR 187 (236)
T ss_pred EEEcCccccccceEEEEEEEeccccchhccchhHhhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 999999988 456565555332 24322 2233322221 3567788888888888888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 028261 170 ELNRVTNSRMAWFSGFSLFICIAVAGMQLWHLKTFFEKKK 209 (211)
Q Consensus 170 ~~~es~~~rv~~~sii~~~vli~~~~~Qv~~lk~fF~~Kk 209 (211)
.+.+++..||.|||++|++++|++++.|+++||++|+.|+
T Consensus 188 ~L~esNf~rVN~WS~vq~~vmi~v~~iQVf~lrslFe~~~ 227 (236)
T KOG3287|consen 188 NLQESNFDRVNFWSMVQTLVMILVGIIQVFMLRSLFEVKS 227 (236)
T ss_pred HHHhcccchhhHHHHHHHHHHHHHhhhhhhhhHHHhcCCC
Confidence 9999999999999999999999999999999999999875
No 6
>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins. It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.
Probab=100.00 E-value=2.3e-40 Score=255.05 Aligned_cols=179 Identities=34% Similarity=0.574 Sum_probs=5.6
Q ss_pred eEEEEEeCCCcceEEEEcCCCcEEEEEEEEecCCCCCCCCCCceEEEEEE--cCCCCeEEeeeccc-eeeEEEEeeeccc
Q 028261 21 SLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVT--SAYGNSYHYADRVD-SGQFAFTAAEAGD 97 (211)
Q Consensus 21 ~l~f~l~~g~~~Cf~~~v~~~~~i~~~y~v~~~~~~~~~~~~~~i~~~v~--~p~g~~i~~~~~~~-~g~~~f~~~~~G~ 97 (211)
|++|+|+||+++||++++++|+.+.|+|.+.++++ +.++++.|+ +|+|+.++++.+.. +|+|+|+++++|+
T Consensus 1 a~~f~l~~g~~~Cf~e~v~~~~~i~~~y~v~~~~~------~~~v~~~i~~~~~~~~~i~~~~~~~~~~~f~f~~~~~G~ 74 (183)
T PF01105_consen 1 ALTFELEPGETECFYEEVPKGTTIRGSYRVTDGGG------AYDVDFTIRDPDPNGEVIYSKSDKESEGSFSFTAKESGE 74 (183)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEECCCCcEEEEEEcCCCcEEEEEEEEeeccc------cceEEEEEEecccCCceeeeecccccCCcEEEEeccCCC
Confidence 68999999999999999999999999999997751 469999999 55668998875554 5799999999999
Q ss_pred EEEEEEecCCCCcee-EEEEEEEeeCccccCchhhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028261 98 YMACFWAVDHSPQTT-VTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTN 176 (211)
Q Consensus 98 y~~Cf~n~~~~~~~~-v~v~~~~~~g~~~~~~~~~ak~e~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~ 176 (211)
|++||+|..+. ... ..|+|+++.|.+..+.++.++++++++++..|+++...++.|+++|+|++.|+++|++.+++++
T Consensus 75 y~iCf~n~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~i~~~q~~~~~r~~~~~~~~es~~ 153 (183)
T PF01105_consen 75 YQICFDNSSSS-FSPSKRVSFDIDVGNENKDYKNVAKKEHLDPLEESLEKLESNLKEIKDEQKYLREREERHRQLNESTN 153 (183)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEEcCCCC-ccccEEEEEEEEEeecccchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999876 223 6778888788765566678899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028261 177 SRMAWFSGFSLFICIAVAGMQLWHLKTFFE 206 (211)
Q Consensus 177 ~rv~~~sii~~~vli~~~~~Qv~~lk~fF~ 206 (211)
+|++||+++++++++++++||+++||+||+
T Consensus 154 ~~i~~~si~~~~vli~~~~~Qv~~lk~~f~ 183 (183)
T PF01105_consen 154 SRIMWWSIIQIVVLILVSVWQVYYLKKFFK 183 (183)
T ss_dssp ------------------------HHHHHH
T ss_pred heEEhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999996
No 7
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=95.41 E-value=0.51 Score=32.12 Aligned_cols=68 Identities=16% Similarity=0.149 Sum_probs=42.7
Q ss_pred CCcEEEEEEEEecCCCCCCCCCCceEEEEEEcCCCCeEEeeec---cceeeEEEEee-----ecccEEEEEEecCC
Q 028261 40 SNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADR---VDSGQFAFTAA-----EAGDYMACFWAVDH 107 (211)
Q Consensus 40 ~~~~i~~~y~v~~~~~~~~~~~~~~i~~~v~~p~g~~i~~~~~---~~~g~~~f~~~-----~~G~y~~Cf~n~~~ 107 (211)
.|+.+.+.--+.+.+.....+.+..+.+.|+||+|+.+.++.. ...|.+++..+ ..|.|++=......
T Consensus 13 PGetV~~~~~~~~~~~~~~~~~~~~~~v~i~dp~g~~v~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~~~~ 88 (99)
T PF01835_consen 13 PGETVHFRAIVRDLDNDFKPPANSPVTVTIKDPSGNEVFRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKTDDD 88 (99)
T ss_dssp TTSEEEEEEEEEEECTTCSCESSEEEEEEEEETTSEEEEEEEEEETTCTTEEEEEEE--SS---EEEEEEEEETTT
T ss_pred CCCEEEEEEEEeccccccccccCCceEEEEECCCCCEEEEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEEccC
Confidence 3677766655544431112334579999999999999977655 23565554432 36999998887533
No 8
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=93.54 E-value=1.2 Score=30.07 Aligned_cols=45 Identities=24% Similarity=0.371 Sum_probs=31.9
Q ss_pred CceEEEEEEcCCCCeEEe-eeccceeeE--EEEeeecccEEEEEEecC
Q 028261 62 SHKLTVRVTSAYGNSYHY-ADRVDSGQF--AFTAAEAGDYMACFWAVD 106 (211)
Q Consensus 62 ~~~i~~~v~~p~g~~i~~-~~~~~~g~~--~f~~~~~G~y~~Cf~n~~ 106 (211)
...+.+.|.+|+|+.+.- -.+..+|.| +|+++..|.|++...-..
T Consensus 31 ~~~~~v~i~~p~g~~~~~~v~d~~dGty~v~y~P~~~G~~~i~V~~~g 78 (93)
T smart00557 31 GGELEVEVTGPSGKKVPVEVKDNGDGTYTVSYTPTEPGDYTVTVKFGG 78 (93)
T ss_pred CCcEEEEEECCCCCeeEeEEEeCCCCEEEEEEEeCCCEeEEEEEEECC
Confidence 468999999999965532 233345544 578888999998877654
No 9
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=93.09 E-value=0.91 Score=28.84 Aligned_cols=61 Identities=18% Similarity=0.183 Sum_probs=41.8
Q ss_pred ceEEEEcCCCcEEEEEEEEecCCCCCCCCCCceEEEEEEcCCCCeEEeeec-----cceeeEEEEeeecccEEEEE
Q 028261 32 KCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADR-----VDSGQFAFTAAEAGDYMACF 102 (211)
Q Consensus 32 ~Cf~~~v~~~~~i~~~y~v~~~~~~~~~~~~~~i~~~v~~p~g~~i~~~~~-----~~~g~~~f~~~~~G~y~~Cf 102 (211)
..|..++++|+.+.+. +... ..+.++.+++++|..+.+... .......|+++.+|+|-+=.
T Consensus 3 D~y~f~v~ag~~l~i~--l~~~--------~~d~dl~l~~~~g~~~~~~d~~~~~~~~~~~i~~~~~~~GtYyi~V 68 (70)
T PF04151_consen 3 DYYSFTVPAGGTLTID--LSGG--------SGDADLYLYDSNGNSLASYDDSSQSGGNDESITFTAPAAGTYYIRV 68 (70)
T ss_dssp EEEEEEESTTEEEEEE--ECET--------TSSEEEEEEETTSSSCEECCCCTCETTSEEEEEEEESSSEEEEEEE
T ss_pred EEEEEEEcCCCEEEEE--EcCC--------CCCeEEEEEcCCCCchhhheecCCCCCCccEEEEEcCCCEEEEEEE
Confidence 4678888998887655 4332 236779999999877765222 12356778888999997643
No 10
>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod. Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....
Probab=90.27 E-value=2.1 Score=28.99 Aligned_cols=43 Identities=21% Similarity=0.312 Sum_probs=28.6
Q ss_pred ceEEEEEEcCCCC----eE-EeeeccceeeE--EEEeeecccEEEEEEec
Q 028261 63 HKLTVRVTSAYGN----SY-HYADRVDSGQF--AFTAAEAGDYMACFWAV 105 (211)
Q Consensus 63 ~~i~~~v~~p~g~----~i-~~~~~~~~g~~--~f~~~~~G~y~~Cf~n~ 105 (211)
..+.+.+.+|++. .+ ..-.+..+|.| +|+++..|.|+++..-.
T Consensus 42 ~~~~v~i~~p~~~~~~~~~~~~v~~~~~G~y~v~y~p~~~G~y~i~V~~~ 91 (101)
T PF00630_consen 42 DEFQVTITSPDGKEEPVPVPVEVIDNGDGTYTVSYTPTEPGKYKISVKIN 91 (101)
T ss_dssp SEEEEEEESSSSESS--EEEEEEEEESSSEEEEEEEESSSEEEEEEEEES
T ss_pred ceeEEEEeCCCCCccccccceEEEECCCCEEEEEEEeCccEeEEEEEEEC
Confidence 4788999999986 33 22233345544 47778888888887654
No 11
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=89.78 E-value=4.1 Score=26.72 Aligned_cols=54 Identities=17% Similarity=0.236 Sum_probs=34.3
Q ss_pred cEEEEEEEEecCCCCCCCCCCceEEEEEEcCCCCeEEeee--ccceeeEEEEee---------ecccEEEEEE
Q 028261 42 SMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYAD--RVDSGQFAFTAA---------EAGDYMACFW 103 (211)
Q Consensus 42 ~~i~~~y~v~~~~~~~~~~~~~~i~~~v~~p~g~~i~~~~--~~~~g~~~f~~~---------~~G~y~~Cf~ 103 (211)
....+.|.+..+ ...+.+.|+|.+|++|++.. ..+.|.+.|... .+|.|.+=+.
T Consensus 12 ~~~~~~~~l~~~--------a~~v~v~I~d~~G~~V~t~~~~~~~~G~~~~~WdG~d~~G~~~~~G~Y~~~v~ 76 (81)
T PF13860_consen 12 TKGSIEYTLPED--------ADNVTVTIYDSNGQVVRTISLGSQSAGEHSFTWDGKDDDGNPVPDGTYTFRVT 76 (81)
T ss_dssp CEEEEEEEECSS--------CEEEEEEEEETTS-EEEEEEEEECSSEEEEEEE-SB-TTS-B--SEEEEEEEE
T ss_pred EEEEEEEeCCCc--------ccEEEEEEEcCCCCEEEEEEcCCcCCceEEEEECCCCCCcCCCCCCCEEEEEE
Confidence 467778877544 45899999999999998743 233455565553 2466665544
No 12
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=88.19 E-value=9.5 Score=29.35 Aligned_cols=48 Identities=13% Similarity=0.226 Sum_probs=30.8
Q ss_pred HhhcceeEEEEEeCCCcceEEEEcCCCcEEEEEEEEecCCCCCCCCCCceEEEEEEc
Q 028261 15 LSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTS 71 (211)
Q Consensus 15 l~~~~~~l~f~l~~g~~~Cf~~~v~~~~~i~~~y~v~~~~~~~~~~~~~~i~~~v~~ 71 (211)
+....+.....+. +.-.-..+.+|..+.+.|.+-..+. +.-.++.+.|
T Consensus 14 ~~~~~~~a~llv~---K~il~~~~v~g~~v~V~~~iyN~G~------~~A~dV~l~D 61 (181)
T PF05753_consen 14 VAQEDSPARLLVS---KQILNKYLVEGEDVTVTYTIYNVGS------SAAYDVKLTD 61 (181)
T ss_pred hccCCCCcEEEEE---EeeccccccCCcEEEEEEEEEECCC------CeEEEEEEEC
Confidence 3334444444443 3334556677999999999987542 4567788888
No 13
>PF09315 DUF1973: Domain of unknown function (DUF1973); InterPro: IPR015394 These functionally uncharacterised domains are found in various eukaryotic calcium-dependent chloride channels.
Probab=87.61 E-value=11 Score=28.93 Aligned_cols=45 Identities=18% Similarity=0.225 Sum_probs=30.3
Q ss_pred eEEEEEEcCCCCeEEe-eeccceeeEEEEe---eecccEEEEEEecCCC
Q 028261 64 KLTVRVTSAYGNSYHY-ADRVDSGQFAFTA---AEAGDYMACFWAVDHS 108 (211)
Q Consensus 64 ~i~~~v~~p~g~~i~~-~~~~~~g~~~f~~---~~~G~y~~Cf~n~~~~ 108 (211)
...+.+++|+|+.+.. ..+.......+.. .+.|.+++.+.|....
T Consensus 42 ~p~i~L~~P~G~~~~~~~~d~~~~~~~i~ipg~ae~G~W~y~i~~~~~~ 90 (179)
T PF09315_consen 42 PPSITLTDPSGTVYTTFTTDSNSKTARIQIPGTAEVGTWTYSITNTSSS 90 (179)
T ss_pred CceEEEECCCCCEEeeeEEcccccEEEEECCCCcccccEEEEEecCCCC
Confidence 4567899999998866 2333334444444 4689999999877654
No 14
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=87.26 E-value=5.1 Score=24.72 Aligned_cols=45 Identities=13% Similarity=0.174 Sum_probs=29.8
Q ss_pred CceEEEEEEcCCCCeEEeeeccceeeEEEEeeecccEEEEEEecCCC
Q 028261 62 SHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHS 108 (211)
Q Consensus 62 ~~~i~~~v~~p~g~~i~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~~~ 108 (211)
+......+.+.+++-+....... .+.|+...+|.|+|-.......
T Consensus 7 ~~~Y~Y~l~g~d~~W~~~~~~~~--~~~~~~L~~G~Y~l~V~a~~~~ 51 (66)
T PF07495_consen 7 NIRYRYRLEGFDDEWITLGSYSN--SISYTNLPPGKYTLEVRAKDNN 51 (66)
T ss_dssp TEEEEEEEETTESSEEEESSTS---EEEEES--SEEEEEEEEEEETT
T ss_pred ceEEEEEEECCCCeEEECCCCcE--EEEEEeCCCEEEEEEEEEECCC
Confidence 45677777777766444433221 8899999999999999887644
No 15
>PRK12813 flgD flagellar basal body rod modification protein; Reviewed
Probab=84.46 E-value=5.1 Score=31.91 Aligned_cols=58 Identities=16% Similarity=0.026 Sum_probs=41.1
Q ss_pred CcEEEEEEEEecCCCCCCCCCCceEEEEEEcCCCCeEEeeeccceeeEEEEee---------ecccEEEEEEecCC
Q 028261 41 NSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAA---------EAGDYMACFWAVDH 107 (211)
Q Consensus 41 ~~~i~~~y~v~~~~~~~~~~~~~~i~~~v~~p~g~~i~~~~~~~~g~~~f~~~---------~~G~y~~Cf~n~~~ 107 (211)
+..+.+.|....+ ...+.+.|+|.+|++|++... +.|.+.|... .+|.|+|-......
T Consensus 110 g~~~~~~~~l~~~--------a~~v~v~I~D~~G~vV~t~~~-~~G~~~f~WDG~d~~G~~l~~G~Yt~~V~A~~~ 176 (223)
T PRK12813 110 GTPVTISPNPAAD--------ADKAELVVRDAAGAEVARETV-PVGAGPVEWAGEDADGNPLPNGAYSFVVESYSG 176 (223)
T ss_pred CceeEEEEeccCC--------CceEEEEEEcCCCCEEEEEee-CCCceeEEeCCcCCCCCcCCCccEEEEEEEEeC
Confidence 4466777776543 458999999999999987643 4555555553 36999999877643
No 16
>PRK06655 flgD flagellar basal body rod modification protein; Reviewed
Probab=84.41 E-value=19 Score=28.71 Aligned_cols=56 Identities=21% Similarity=0.210 Sum_probs=40.2
Q ss_pred cEEEEEEEEecCCCCCCCCCCceEEEEEEcCCCCeEEeeec--cceeeEEEEee---------ecccEEEEEEec
Q 028261 42 SMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADR--VDSGQFAFTAA---------EAGDYMACFWAV 105 (211)
Q Consensus 42 ~~i~~~y~v~~~~~~~~~~~~~~i~~~v~~p~g~~i~~~~~--~~~g~~~f~~~---------~~G~y~~Cf~n~ 105 (211)
....+.|....+ ...+.+.|+|.+|++|++-.. .+.|.+.|... .+|.|++=+...
T Consensus 113 ~~~~~~~~l~~~--------a~~vti~I~D~~G~~Vrt~~lg~~~aG~~~f~WDG~d~~G~~lp~G~Yt~~V~A~ 179 (225)
T PRK06655 113 GTTPFGVELPSA--------ADNVTVTITDSAGQVVRTIDLGAQSAGVVSFTWDGTDTDGNALPDGNYTIKASAS 179 (225)
T ss_pred CceEEEEEcCCC--------CcEEEEEEEcCCCCEEEEEecCCcCCCceeEEECCCCCCCCcCCCeeEEEEEEEE
Confidence 355666665433 458999999999999986432 45788888653 379999998765
No 17
>PRK12812 flgD flagellar basal body rod modification protein; Reviewed
Probab=83.14 E-value=15 Score=30.03 Aligned_cols=57 Identities=14% Similarity=0.138 Sum_probs=40.8
Q ss_pred cEEEEEEEEecCCCCCCCCCCceEEEEEEcCCCCeEEeee--ccceeeEEEEeee---------cccEEEEEEecC
Q 028261 42 SMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYAD--RVDSGQFAFTAAE---------AGDYMACFWAVD 106 (211)
Q Consensus 42 ~~i~~~y~v~~~~~~~~~~~~~~i~~~v~~p~g~~i~~~~--~~~~g~~~f~~~~---------~G~y~~Cf~n~~ 106 (211)
..+.+.|.+... ...+.+.|+|.+|++|++.. ..+.|.+.|.... +|.|++-.....
T Consensus 128 ~~~~~~~~l~~~--------a~~v~v~I~D~~G~~V~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Yt~~v~A~~ 195 (259)
T PRK12812 128 ELIALKLYFPED--------SDEGTLEIYDSNNKLVEKIDFKEISQGLFTMEWDGRDNDGVYAGDGEYTIKAVYNN 195 (259)
T ss_pred ceeEEEEecCCc--------CceEEEEEEeCCCCEEEEEecCCCCCcceeEEECCCCCCCCcCCCeeeEEEEEEEc
Confidence 356666665332 45899999999999998753 3446777887743 699999987544
No 18
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=82.61 E-value=31 Score=29.75 Aligned_cols=47 Identities=11% Similarity=0.053 Sum_probs=29.0
Q ss_pred CceEEEEEEcCCCCeEEeeeccceeeEEEEe---eecccEEEEEEecCCC
Q 028261 62 SHKLTVRVTSAYGNSYHYADRVDSGQFAFTA---AEAGDYMACFWAVDHS 108 (211)
Q Consensus 62 ~~~i~~~v~~p~g~~i~~~~~~~~g~~~f~~---~~~G~y~~Cf~n~~~~ 108 (211)
+-.+++.+++|+|..........++...+.. .+.|.|++-.+.-.+.
T Consensus 241 s~~~~~~~~~P~g~~~~~~~~~~~~~~~~~l~~~~~~G~Y~i~~~~~~Tt 290 (374)
T TIGR03503 241 SLVIHGELVFPNGQIQQFSIELEEPETRVDLPANYEFGKYRVKGTVFGTT 290 (374)
T ss_pred cEEEEEEEECCCCceEEecccCccCceEEeccCcCCCeEEEEEEEEEEec
Confidence 4578888899999843333333344444433 3679998876655443
No 19
>PF11589 DUF3244: Domain of unknown function (DUF3244); InterPro: IPR021638 This family of proteins with unknown function appear to be restricted to Bacteroidetes. The protein may have an immunoglobulin-like beta-sandwich fold however this cannot be confirmed. ; PDB: 3D33_B 3SD2_A.
Probab=82.55 E-value=7.8 Score=26.81 Aligned_cols=57 Identities=11% Similarity=0.144 Sum_probs=37.1
Q ss_pred CcEEEEEEEEecCCCCCCCCCCceEEEEEEcCCCCeEEeeeccc--eeeEEEEe--eecccEEEEEEecCC
Q 028261 41 NSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVD--SGQFAFTA--AEAGDYMACFWAVDH 107 (211)
Q Consensus 41 ~~~i~~~y~v~~~~~~~~~~~~~~i~~~v~~p~g~~i~~~~~~~--~g~~~f~~--~~~G~y~~Cf~n~~~ 107 (211)
|..+.+.|.. + ..++.+.|+|..|+++|+..-.. .....+.. ...|+|.+=+.+...
T Consensus 36 ~~~l~I~F~~--~--------~~~vtI~I~d~~G~vVy~~~~~~~~~~~~~I~L~~~~~G~Y~l~i~~~~g 96 (106)
T PF11589_consen 36 GNNLSIEFES--P--------IGDVTITIKDSTGNVVYSETVSNSAGQSITIDLNGLPSGEYTLEITNGNG 96 (106)
T ss_dssp TTEEEEEESS------------SEEEEEEEETT--EEEEEEESCGGTTEEEEE-TTS-SEEEEEEEEECTC
T ss_pred CCEEEEEEcC--C--------CCCEEEEEEeCCCCEEEEEEccCCCCcEEEEEeCCCCCccEEEEEEeCCC
Confidence 5666666642 2 34899999999999999874333 23455555 468999999998875
No 20
>PRK12633 flgD flagellar basal body rod modification protein; Provisional
Probab=80.02 E-value=20 Score=28.65 Aligned_cols=45 Identities=22% Similarity=0.315 Sum_probs=34.6
Q ss_pred CceEEEEEEcCCCCeEEeee--ccceeeEEEEee---------ecccEEEEEEecC
Q 028261 62 SHKLTVRVTSAYGNSYHYAD--RVDSGQFAFTAA---------EAGDYMACFWAVD 106 (211)
Q Consensus 62 ~~~i~~~v~~p~g~~i~~~~--~~~~g~~~f~~~---------~~G~y~~Cf~n~~ 106 (211)
...+.+.|+|.+|++|++.. ..+.|.+.|... .+|.|+|-+....
T Consensus 128 a~~v~v~I~D~~G~vV~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Y~~~V~a~~ 183 (230)
T PRK12633 128 ATKVTVKVLDPSGAVVRTMELGDLKTGVHTLQWDGNNDGGQPLADGKYSITVSASD 183 (230)
T ss_pred CcEEEEEEEeCCCCEEEEEecCCCCCCceeEEECCCCCCCCcCCCcceEEEEEEEe
Confidence 46899999999999998753 345778888763 3689999997644
No 21
>PF15417 DUF4624: Domain of unknown function (DUF4624)
Probab=79.64 E-value=19 Score=25.35 Aligned_cols=77 Identities=14% Similarity=0.374 Sum_probs=42.6
Q ss_pred CCcceEEEEcCC-CcEEEEEEEEecCCCCCCCCCCceEEEEEEcCC-CCeEEee--ecc-ceeeEEEEe---eecccEEE
Q 028261 29 AHTKCIAEDIKS-NSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAY-GNSYHYA--DRV-DSGQFAFTA---AEAGDYMA 100 (211)
Q Consensus 29 g~~~Cf~~~v~~-~~~i~~~y~v~~~~~~~~~~~~~~i~~~v~~p~-g~~i~~~--~~~-~~g~~~f~~---~~~G~y~~ 100 (211)
|...|+.+++.. +..+ .|.. +|+ .--+.|+|-+ ..++++. .+. ....|+... +...+|-+
T Consensus 37 ~rLFcVs~Die~L~aEv--~f~m-DGe---------~~iVEiKd~~~devLWsn~~~~~V~~dt~tisL~nlqk~kEY~V 104 (132)
T PF15417_consen 37 GRLFCVSEDIEALDAEV--YFQM-DGE---------SGIVEIKDRKTDEVLWSNTWNGKVSGDTFTISLNNLQKEKEYVV 104 (132)
T ss_pred ceEEEEecchheeeeEE--EEEE-cCc---------cceEEeccCCccceeeccccccccccceEEEEhhhcccCceEEE
Confidence 467788877765 4444 3333 443 2236666643 4566653 222 233555443 45779999
Q ss_pred EEEecCCCCceeEEEEEE
Q 028261 101 CFWAVDHSPQTTVTIDFD 118 (211)
Q Consensus 101 Cf~n~~~~~~~~v~v~~~ 118 (211)
||....-. ...+.+.|+
T Consensus 105 ~ftGtkIn-hAvv~vtFe 121 (132)
T PF15417_consen 105 CFTGTKIN-HAVVKVTFE 121 (132)
T ss_pred EEeccEee-eEEEEEEec
Confidence 99976533 334555554
No 22
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=78.42 E-value=11 Score=25.85 Aligned_cols=16 Identities=25% Similarity=0.534 Sum_probs=10.4
Q ss_pred eeeEEEEeeecccEEE
Q 028261 85 SGQFAFTAAEAGDYMA 100 (211)
Q Consensus 85 ~g~~~f~~~~~G~y~~ 100 (211)
...+.|++.++|+|.+
T Consensus 75 ~~~~~f~~~~~G~y~~ 90 (104)
T PF13473_consen 75 TATVTFTPLKPGEYEF 90 (104)
T ss_dssp EEEEEEEE-S-EEEEE
T ss_pred EEEEEEcCCCCEEEEE
Confidence 4567777889999965
No 23
>PRK05842 flgD flagellar basal body rod modification protein; Reviewed
Probab=77.47 E-value=15 Score=30.51 Aligned_cols=60 Identities=8% Similarity=-0.048 Sum_probs=39.8
Q ss_pred cEEEEEEEEecCCCCCCCCCCceEEEEEEcCCCCeEEeeecc----ceeeEEEEee---------ecccEEEEEEec
Q 028261 42 SMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRV----DSGQFAFTAA---------EAGDYMACFWAV 105 (211)
Q Consensus 42 ~~i~~~y~v~~~~~~~~~~~~~~i~~~v~~p~g~~i~~~~~~----~~g~~~f~~~---------~~G~y~~Cf~n~ 105 (211)
..+.+.|....+.+ .....+.+.|+|.+|++|++-... ..|.+.|... .+|.|+|-....
T Consensus 149 ~~~~~~~~l~~~~~----~~a~~v~I~I~Da~G~vVrTi~l~~~~~~aG~~~f~WDG~d~~G~~~p~G~Yt~~V~a~ 221 (295)
T PRK05842 149 NKLSFSLFFDEKID----ASKGVPAIQILNENNELVKTIPLKDYNGQKGYINFEWDGLNEKGEKVPKGNYKIKAEYN 221 (295)
T ss_pred CceEEEEecccccc----ccCceEEEEEEcCCCCEEEEEecCcccCCCcceeEEECCCCCCCCcCCCcceEEEEEEE
Confidence 35566666543211 013589999999999999875432 3478888763 369999998654
No 24
>PHA03376 BARF1; Provisional
Probab=77.30 E-value=32 Score=26.84 Aligned_cols=96 Identities=9% Similarity=0.106 Sum_probs=47.4
Q ss_pred ChhHHHHHHHHHHHHhhcceeEEEEEeCC-CcceEEEEcCCCcEEEEEEEEecCCCCCCCCCCceEEEEEEcCCCCeEEe
Q 028261 1 MIRLTLTLVLVIGILSSTSQSLRFEIQSA-HTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHY 79 (211)
Q Consensus 1 ~~~~~~~~~~~l~~l~~~~~~l~f~l~~g-~~~Cf~~~v~~~~~i~~~y~v~~~~~~~~~~~~~~i~~~v~~p~g~~i~~ 79 (211)
|.|++.-|++ |+-|+..+.++.-.+... .--|-+-....+..+.+.+.=..++ +..+-+...+ ++++..
T Consensus 1 ~~~~~~~Ll~-La~l~~sg~pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~-------~~~VvL~~~g--gdVv~~ 70 (221)
T PHA03376 1 MARFIAQLLL-LASCVAAGQAVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPG-------EEQVLIGRMH--HDVIFI 70 (221)
T ss_pred ChhHHHHHHH-HHHHhccCcchhheeCCcEEEEecccCccCCCceEEEEEecCCC-------CCCEEEEEcC--Ceeeee
Confidence 4455554444 443445555555555322 4567666455556666665543321 1233333332 122221
Q ss_pred eeccc---------eeeEEEEe-----eecccEEEEEEecCC
Q 028261 80 ADRVD---------SGQFAFTA-----AEAGDYMACFWAVDH 107 (211)
Q Consensus 80 ~~~~~---------~g~~~f~~-----~~~G~y~~Cf~n~~~ 107 (211)
+- +- .|.++... .++|.|+.+|.-...
T Consensus 71 Qm-EyRGrtD~~~~~gnvsLvI~~l~lSDdGtY~C~fQkge~ 111 (221)
T PHA03376 71 EW-PFRGFFDIHRSANTFFLVVTAANISHDGNYLCRMKLGET 111 (221)
T ss_pred ee-ccccEEEEEecCCeEEEEEEeeeecCCceEEEEEEcCCC
Confidence 11 11 24555443 468999999987653
No 25
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=77.03 E-value=7.8 Score=24.21 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=34.3
Q ss_pred eEEEEEEcCCCCeEEe--eeccceeeEEEEeeecccEEEEEEecCC
Q 028261 64 KLTVRVTSAYGNSYHY--ADRVDSGQFAFTAAEAGDYMACFWAVDH 107 (211)
Q Consensus 64 ~i~~~v~~p~g~~i~~--~~~~~~g~~~f~~~~~G~y~~Cf~n~~~ 107 (211)
++.|.+++.++..... ..-...|.+.|.--..|.|.+=......
T Consensus 3 Ga~f~L~~~~~~~~~~~~~~Td~~G~~~f~~L~~G~Y~l~E~~aP~ 48 (70)
T PF05738_consen 3 GATFELYDEDGNEVIEVTVTTDENGKYTFKNLPPGTYTLKETKAPD 48 (70)
T ss_dssp TEEEEEEETTSEEEEEEEEEGGTTSEEEEEEEESEEEEEEEEETTT
T ss_pred CeEEEEEECCCCEEEEEEEEECCCCEEEEeecCCeEEEEEEEECCC
Confidence 5678889988887764 4434589999998899999999887443
No 26
>PRK12634 flgD flagellar basal body rod modification protein; Reviewed
Probab=76.84 E-value=23 Score=28.17 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=34.7
Q ss_pred CceEEEEEEcCCCCeEEeee--ccceeeEEEEeee---------cccEEEEEEecC
Q 028261 62 SHKLTVRVTSAYGNSYHYAD--RVDSGQFAFTAAE---------AGDYMACFWAVD 106 (211)
Q Consensus 62 ~~~i~~~v~~p~g~~i~~~~--~~~~g~~~f~~~~---------~G~y~~Cf~n~~ 106 (211)
...+.+.|+|.+|+++++.. ..+.|.+.|.... +|.|++-.....
T Consensus 121 a~~v~i~I~d~~G~~V~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Yt~~v~a~~ 176 (221)
T PRK12634 121 AGFVNFEITDANGAFVKQISVPASAAGEVSFAWDGTDANGNRMAAGKYGVTATQTD 176 (221)
T ss_pred CCeEEEEEEcCCCCEEEEEecCCcCCCceeEEECCCCCCCCcCCCeeeEEEEEEEe
Confidence 46899999999999998753 3456888887743 599999997543
No 27
>PF10528 PA14_2: GLEYA domain; InterPro: IPR018871 This presumed domain is found in fungal adhesins and is related to the PA14 domain. ; PDB: 4A3X_A.
Probab=76.35 E-value=8.6 Score=27.14 Aligned_cols=47 Identities=9% Similarity=0.067 Sum_probs=27.1
Q ss_pred CCCcceEEEEcCCCcEEEEEEEEecCCCCCCCCCCceEEEEEEcCCCCeEEee
Q 028261 28 SAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYA 80 (211)
Q Consensus 28 ~g~~~Cf~~~v~~~~~i~~~y~v~~~~~~~~~~~~~~i~~~v~~p~g~~i~~~ 80 (211)
.+...++...+.+|...-++.....++. ...+++.+++|+|..+.+.
T Consensus 56 ~~~~~~~tv~L~aG~yyPiRi~~~N~~g------~~~~~~~i~~P~G~~~~~~ 102 (113)
T PF10528_consen 56 TGASKSVTVYLTAGTYYPIRIVYANGGG------PGSFDFSITDPDGTVHTDD 102 (113)
T ss_dssp S-SEEEEEEEE-TT-BEEEEEEEEE-SS-------EEEEEEEEETT-S--B--
T ss_pred CCCceEEEEEEECCcEEEEEEEEEcCCC------ceEEEEEEECCCCcEEecC
Confidence 4566788889999886555544444332 4589999999999988765
No 28
>KOG0518 consensus Actin-binding cytoskeleton protein, filamin [Cytoskeleton]
Probab=71.41 E-value=21 Score=34.65 Aligned_cols=47 Identities=28% Similarity=0.367 Sum_probs=35.0
Q ss_pred CceEEEEEEcCCCCeEEe-eecccee--eEEEEeeecccEEEEEEecCCC
Q 028261 62 SHKLTVRVTSAYGNSYHY-ADRVDSG--QFAFTAAEAGDYMACFWAVDHS 108 (211)
Q Consensus 62 ~~~i~~~v~~p~g~~i~~-~~~~~~g--~~~f~~~~~G~y~~Cf~n~~~~ 108 (211)
..++.+.+.||+|+..-- -....+| +..|+..+.|.|++|..+..-.
T Consensus 882 ~~d~ta~vt~PSG~~~~aei~~~~~~~y~vrFtP~e~G~~tl~V~y~~~~ 931 (1113)
T KOG0518|consen 882 SQDITARVTDPSGRVFEAEIVDLGQGTYQVRFTPKEPGNHTLSVKYKDQH 931 (1113)
T ss_pred ccceEEEeeCCCCCccccEEEECCCceEEEEecCCCCCceEEEEEecCcc
Confidence 578999999999975421 1222344 5668999999999999998755
No 29
>PF13897 GOLD_2: Golgi-dynamics membrane-trafficking
Probab=71.06 E-value=6.9 Score=28.48 Aligned_cols=19 Identities=21% Similarity=0.107 Sum_probs=16.3
Q ss_pred EEeeecccEEEEEEecCCC
Q 028261 90 FTAAEAGDYMACFWAVDHS 108 (211)
Q Consensus 90 f~~~~~G~y~~Cf~n~~~~ 108 (211)
+..+.+|.|-++|+|+.+.
T Consensus 105 ~~c~~~GvYvLkFDNSYS~ 123 (136)
T PF13897_consen 105 HTCPGPGVYVLKFDNSYSW 123 (136)
T ss_pred EECCCCeEEEEEeeCccee
Confidence 5567899999999999876
No 30
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=69.95 E-value=26 Score=22.36 Aligned_cols=15 Identities=7% Similarity=0.195 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 028261 141 ELELKKLYDTVSSIH 155 (211)
Q Consensus 141 ~~~l~~l~~~l~~i~ 155 (211)
.+.+.+++..++++.
T Consensus 5 ~e~l~~ie~~l~~~~ 19 (71)
T PF10779_consen 5 KEKLNRIETKLDNHE 19 (71)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 31
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=68.55 E-value=50 Score=28.51 Aligned_cols=67 Identities=9% Similarity=0.287 Sum_probs=33.0
Q ss_pred eEEEEEeCCCcceEEE--EcCCCcEEEEEEEEecCCCCCCCCCCceEEEEEEcCCCCeEEeeeccce---eeEEEEeeec
Q 028261 21 SLRFEIQSAHTKCIAE--DIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDS---GQFAFTAAEA 95 (211)
Q Consensus 21 ~l~f~l~~g~~~Cf~~--~v~~~~~i~~~y~v~~~~~~~~~~~~~~i~~~v~~p~g~~i~~~~~~~~---g~~~f~~~~~ 95 (211)
.+.+.+..+ .|--. .++.|. ..|.|.+.+ .....+.+.++ +.++-..++... +.+.++. .+
T Consensus 31 ~v~Vti~d~--~c~p~~~tVpAG~---~~f~V~N~~-------~~~~Efe~~~~-~~vv~e~EnIaPG~s~~l~~~L-~p 96 (375)
T PRK10378 31 QVKVTVNDK--QCEPMTLTVNAGK---TQFIIQNHS-------QKALEWEILKG-VMVVEERENIAPGFSQKMTANL-QP 96 (375)
T ss_pred ceEEEEECC--ccccCceeeCCCC---EEEEEEeCC-------CCcceEEeecc-ccccccccccCCCCceEEEEec-CC
Confidence 456666544 45433 345564 345555443 23445555532 222223333333 3444333 69
Q ss_pred ccEEE-E
Q 028261 96 GDYMA-C 101 (211)
Q Consensus 96 G~y~~-C 101 (211)
|+|.+ |
T Consensus 97 GtY~~~C 103 (375)
T PRK10378 97 GEYDMTC 103 (375)
T ss_pred ceEEeec
Confidence 99987 9
No 32
>PRK09619 flgD flagellar basal body rod modification protein; Reviewed
Probab=67.76 E-value=44 Score=26.48 Aligned_cols=56 Identities=21% Similarity=0.405 Sum_probs=38.7
Q ss_pred cEEEEEEEEecCCCCCCCCCCceEEEEEEcCCCCeEEeee--ccceeeEEEEee------ecccEEEEEEecC
Q 028261 42 SMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYAD--RVDSGQFAFTAA------EAGDYMACFWAVD 106 (211)
Q Consensus 42 ~~i~~~y~v~~~~~~~~~~~~~~i~~~v~~p~g~~i~~~~--~~~~g~~~f~~~------~~G~y~~Cf~n~~ 106 (211)
....+.|.+..+ ...+.+.|+|.+|++ +... ....|.+.|... .+|.|++-.....
T Consensus 110 ~~~~~~~~L~~~--------a~~v~v~I~D~~G~v-~t~~l~~~~aG~~~f~WDG~~~~lp~G~Y~~~V~a~~ 173 (218)
T PRK09619 110 DPVAGRLTLKHP--------APTLTLHITDILGQE-KKIDLGKQPAGPVNFTLDPAALGLQPGQYQLSVVSGS 173 (218)
T ss_pred CeeEEEEecCCc--------CcEEEEEEEeCCCCE-EEEecCCcCCCceeEEECCCCCCCCCceeEEEEEEeC
Confidence 455667775433 457999999999997 4432 234678888764 3799999987654
No 33
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=67.41 E-value=11 Score=24.17 Aligned_cols=43 Identities=23% Similarity=0.289 Sum_probs=28.2
Q ss_pred eEEEEEEcCCCCeEEeeeccceeeEEEEeeecccEEEEEEecC
Q 028261 64 KLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVD 106 (211)
Q Consensus 64 ~i~~~v~~p~g~~i~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~ 106 (211)
+..+.+.+.++.......-..+|.|.|..-.+|.|.+=+....
T Consensus 16 ~a~V~l~~~~~~~~~~~~Td~~G~f~~~~l~~g~Y~l~v~~~g 58 (82)
T PF13620_consen 16 GATVTLTDQDGGTVYTTTTDSDGRFSFEGLPPGTYTLRVSAPG 58 (82)
T ss_dssp T-EEEET--TTTECCEEE--TTSEEEEEEE-SEEEEEEEEBTT
T ss_pred CEEEEEEEeeCCCEEEEEECCCceEEEEccCCEeEEEEEEECC
Confidence 6777788777776655544568999999666799998886554
No 34
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=66.59 E-value=15 Score=24.24 Aligned_cols=21 Identities=10% Similarity=0.063 Sum_probs=13.6
Q ss_pred CceEEEEEEcCCCCeEEeeec
Q 028261 62 SHKLTVRVTSAYGNSYHYADR 82 (211)
Q Consensus 62 ~~~i~~~v~~p~g~~i~~~~~ 82 (211)
++..++.|+|++|+.++.++.
T Consensus 23 gq~~D~~v~d~~g~~vwrwS~ 43 (82)
T PF12690_consen 23 GQRYDFVVKDKEGKEVWRWSD 43 (82)
T ss_dssp S--EEEEEE-TT--EEEETTT
T ss_pred CCEEEEEEECCCCCEEEEecC
Confidence 578899999999999998754
No 35
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=63.78 E-value=16 Score=25.86 Aligned_cols=44 Identities=9% Similarity=-0.031 Sum_probs=22.2
Q ss_pred CcceEEEEcCCCcEEEEEEEEecCCCCCCCCCCceEEEEEEcCCCCeEEe
Q 028261 30 HTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHY 79 (211)
Q Consensus 30 ~~~Cf~~~v~~~~~i~~~y~v~~~~~~~~~~~~~~i~~~v~~p~g~~i~~ 79 (211)
.+.|=.....+.-.+.+.|.+...-. +..+.+.|++.+|..++.
T Consensus 25 g~~~~~~~~ge~~~i~i~~~~~~~i~------~~~~~~~i~~~~g~~v~~ 68 (142)
T PF14524_consen 25 GEPTSSFESGEPIRIRIDYEVNEDID------DPVFGFAIRDSDGQRVFG 68 (142)
T ss_dssp EES-SSEETTSEEEEEEEEEESS-EE------EEEEEEEEEETT--EEEE
T ss_pred CCEeeEEeCCCEEEEEEEEEECCCCC------ccEEEEEEEcCCCCEEEE
Confidence 34443333332334455555533221 346888999999988875
No 36
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=61.43 E-value=5 Score=18.47 Aligned_cols=13 Identities=31% Similarity=0.644 Sum_probs=8.4
Q ss_pred ChhHHHHHHHHHH
Q 028261 1 MIRLTLTLVLVIG 13 (211)
Q Consensus 1 ~~~~~~~~~~~l~ 13 (211)
||++...++.+|+
T Consensus 1 MMk~vIIlvvLLl 13 (19)
T PF13956_consen 1 MMKLVIILVVLLL 13 (19)
T ss_pred CceehHHHHHHHh
Confidence 7787766555554
No 37
>COG3017 LolB Outer membrane lipoprotein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane]
Probab=59.91 E-value=83 Score=24.70 Aligned_cols=30 Identities=23% Similarity=0.247 Sum_probs=23.9
Q ss_pred ChhHHHHHHHHHHHHhhcceeEEEEEeCCC
Q 028261 1 MIRLTLTLVLVIGILSSTSQSLRFEIQSAH 30 (211)
Q Consensus 1 ~~~~~~~~~~~l~~l~~~~~~l~f~l~~g~ 30 (211)
||+...++++.+|.++-+++++....+|+.
T Consensus 3 ~~~~~~~~l~~~As~LL~aC~~~~~~~~~~ 32 (206)
T COG3017 3 MMKRLLFLLLALASLLLTACTLTASRPPNN 32 (206)
T ss_pred hHHHHHHHHHHHHHHHHHhccCcCCCCCCC
Confidence 577788888888877778888888888776
No 38
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.86 E-value=68 Score=25.80 Aligned_cols=24 Identities=13% Similarity=0.282 Sum_probs=14.7
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHH
Q 028261 135 GSVDVMELELKKLYDTVSSIHQEM 158 (211)
Q Consensus 135 e~~~~l~~~l~~l~~~l~~i~~~q 158 (211)
++++.+..++.++......|..|.
T Consensus 152 e~Ld~ls~ti~rlk~~a~~~g~EL 175 (235)
T KOG3202|consen 152 EGLDGLSATVQRLKGMALAMGEEL 175 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHH
Confidence 346667777776666666665443
No 39
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=57.55 E-value=1.7e+02 Score=27.47 Aligned_cols=58 Identities=12% Similarity=0.118 Sum_probs=38.2
Q ss_pred CceEEEEEEcCCCCeEEeeeccceeeEEEEeeecccEEEEEEecCCC----CceeEEEEEEEe
Q 028261 62 SHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHS----PQTTVTIDFDWR 120 (211)
Q Consensus 62 ~~~i~~~v~~p~g~~i~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~~~----~~~~v~v~~~~~ 120 (211)
+..+.+.|+. +|+.+-...-.....+.|++..+|.|++=....+.. -.....|.+.++
T Consensus 415 ~~lY~f~ik~-ng~~ve~~~Y~~~~~~~f~P~~~G~Y~IeV~vKdk~S~~~yD~~k~v~l~V~ 476 (667)
T PRK14081 415 NLRYSFIIKK-DGKEEEKIDYGKNNWVNFIPEEKGNYELEVRVKDKYSDKEYDAHTIVYIKVH 476 (667)
T ss_pred eEEEEEEEEE-CCEEEEEeecccccEEEEEECCCeeEEEEEEEecccCchhcccceEEEEEEe
Confidence 3456666665 566666655556789999999999998877766433 122344555554
No 40
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=57.21 E-value=89 Score=25.15 Aligned_cols=22 Identities=5% Similarity=0.205 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028261 181 WFSGFSLFICIAVAGMQLWHLKT 203 (211)
Q Consensus 181 ~~sii~~~vli~~~~~Qv~~lk~ 203 (211)
||..+-+++ +++.++-++.+=|
T Consensus 228 ~~~~~~i~~-v~~~Fi~mvl~ir 249 (251)
T PF09753_consen 228 CWTWLMIFV-VIIVFIMMVLFIR 249 (251)
T ss_pred HHHHHHHHH-HHHHHHHHHHHhe
Confidence 555554443 3444444444433
No 41
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=55.32 E-value=87 Score=23.50 Aligned_cols=47 Identities=13% Similarity=0.177 Sum_probs=34.8
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028261 135 GSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAW 181 (211)
Q Consensus 135 e~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~ 181 (211)
...+.+....+++.+....+++-.......-+|.+.+..=...+..+
T Consensus 52 ~~~~~lr~Rydrlr~va~rvQ~vlgd~At~gERl~allsWrdP~aT~ 98 (156)
T PF08372_consen 52 RPPDSLRMRYDRLRSVAGRVQNVLGDVATQGERLQALLSWRDPRATA 98 (156)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccHHH
Confidence 33466888888888888888888888888888877777654444444
No 42
>PF08842 Mfa2: Fimbrillin-A associated anchor proteins Mfa1 and Mfa2; InterPro: IPR014941 This family of proteins may be lipoproteins principally from bacilli. They are between 300 and 400 residues. Many Bacteroides-like bacterial species, including Porphyromonas gingivalis, the causal agent of periodontal infection, carry at least two types of fimbriae, namely FimA and Mfa1 fimbriae, following the names of their major subunit proteins []. Normally, FimA fimbriae are long filaments that are easily detached from cells, whereas Mfa1 fimbriae are short filaments that are tightly bound to cells; however, in the absence of Mfa2 protein, the Mfa1 fimbriae are also very long and are not attached. Mfa2 and Mfa1 are associated with each other in whole P. gingivalis cells to the extent that Mfa2 is located on the cell surface and probably associated with Mfa1 fimbriae in such a way that it anchors the Mfa1 fimbriae to the cell surface and regulates Mfa1 filament length [].; PDB: 3PAY_C 3GF8_A.
Probab=55.29 E-value=10 Score=30.48 Aligned_cols=68 Identities=13% Similarity=0.100 Sum_probs=31.2
Q ss_pred CCCcEEEEEEEEecCCCCCCCCCCceEEEEEEcCCCCeEEeeeccc---e-eeEEE--EeeecccEEEEEEecC
Q 028261 39 KSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVD---S-GQFAF--TAAEAGDYMACFWAVD 106 (211)
Q Consensus 39 ~~~~~i~~~y~v~~~~~~~~~~~~~~i~~~v~~p~g~~i~~~~~~~---~-g~~~f--~~~~~G~y~~Cf~n~~ 106 (211)
|.+-.+.+.|.-..+........-..+++.|+|.+|+.+.+..... . +.|.. ..-..|+|+++.....
T Consensus 5 ~~~~~l~f~y~~~~~~~~~~~~~v~~v~lyvFd~~g~~v~~~~~~~~~~~~~~y~~~~~~l~~G~Y~~va~~n~ 78 (283)
T PF08842_consen 5 PGGLTLKFSYDYNMGNADAFEDEVKRVDLYVFDEDGKLVKQRTIDSEELEGGGYTMFLLDLPPGTYTFVAWGNL 78 (283)
T ss_dssp ---EEEEEE---STT-S--HHHH--EEEEEEE-TTSBEEEEEEEECGGCCTTTEEE-CCT--SEEEEEEEEES-
T ss_pred CceEEEEEEEeCCccccccccceEeEEEEEEEeCCCeEEEEEEcccccccCCceEEeeccCCCCcEEEEEEECC
Confidence 3455565665543121110111134899999999999654432211 2 44444 2236789999988753
No 43
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=55.18 E-value=46 Score=20.27 Aligned_cols=30 Identities=23% Similarity=0.382 Sum_probs=20.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028261 137 VDVMELELKKLYDTVSSIHQEMFYLREREE 166 (211)
Q Consensus 137 ~~~l~~~l~~l~~~l~~i~~~q~~~~~re~ 166 (211)
++.++..+.+++..+..++.+..-++..-+
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve 31 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVE 31 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788888887777777666654433
No 44
>PF07835 COX4_pro_2: Bacterial aa3 type cytochrome c oxidase subunit IV; InterPro: IPR012422 Bacterial cytochrome c oxidase is found bound to the to the cell membrane, where it is involved in the generation of the transmembrane proton electrochemical gradient. It is composed of four subunits. Subunit IV consists of one transmembrane helix that does not interact directly with the other subunits, but maintains its position by indirect contacts via phospholipid molecules found in the structure. The function of subunit IV is as yet unknown []. ; PDB: 1QLE_D 1M57_J 1M56_J.
Probab=54.05 E-value=41 Score=19.40 Aligned_cols=28 Identities=14% Similarity=-0.122 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028261 168 MQELNRVTNSRMAWFSGFSLFICIAVAG 195 (211)
Q Consensus 168 ~~~~~es~~~rv~~~sii~~~vli~~~~ 195 (211)
|.++-+.--+-..|.+++-+++++++++
T Consensus 14 he~Ty~gFi~~~k~~~~~~~~~li~lai 41 (44)
T PF07835_consen 14 HEKTYDGFIKLTKWGTIAIAAILIFLAI 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444556666666666666654
No 45
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=52.93 E-value=85 Score=24.78 Aligned_cols=29 Identities=10% Similarity=0.157 Sum_probs=16.4
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028261 136 SVDVMELELKKLYDTVSSIHQEMFYLRER 164 (211)
Q Consensus 136 ~~~~l~~~l~~l~~~l~~i~~~q~~~~~r 164 (211)
+++.++.++.+++-.++.++...+-.+.|
T Consensus 16 ~L~rle~qi~q~~~~~~~~qs~l~~~~~r 44 (251)
T COG5415 16 DLSRLESQIHQLDVALKKSQSILSQWQSR 44 (251)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666665554444433
No 46
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=48.56 E-value=62 Score=19.80 Aligned_cols=26 Identities=19% Similarity=0.400 Sum_probs=15.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHH
Q 028261 137 VDVMELELKKLYDTVSSIHQEMFYLR 162 (211)
Q Consensus 137 ~~~l~~~l~~l~~~l~~i~~~q~~~~ 162 (211)
++.|...++.|...+..+..+..-++
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr 30 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALR 30 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666655544
No 47
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=48.48 E-value=2.2e+02 Score=26.05 Aligned_cols=78 Identities=13% Similarity=0.074 Sum_probs=40.4
Q ss_pred EEEEeCCCcceEEEEcCC----CcEEEEEEEEecCCCCCCCCCCceEEEEEEcCCCCeEEeeeccceeeEEEEe---e--
Q 028261 23 RFEIQSAHTKCIAEDIKS----NSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTA---A-- 93 (211)
Q Consensus 23 ~f~l~~g~~~Cf~~~v~~----~~~i~~~y~v~~~~~~~~~~~~~~i~~~v~~p~g~~i~~~~~~~~g~~~f~~---~-- 93 (211)
.+++|++...|-|--.+. .-.-.|=|.|-.... ..+---+++..|+|..-.+ .......|.+ +
T Consensus 14 ~~Y~P~~~v~C~Ytlt~~~~ps~~DWIGiFKVGw~s~-----rdY~Tf~Wa~~p~~~~~~s---~~~~~V~F~ayyLPk~ 85 (546)
T PF07888_consen 14 KSYIPGTDVECHYTLTPGFHPSSKDWIGIFKVGWSST-----RDYYTFVWAPVPENYVEGS---AVNCQVQFQAYYLPKD 85 (546)
T ss_pred cccCCCCCeEEEEecCCCCCCCCCCeeEEeecCCCch-----hheeeEEeeccCccccCCC---ccceEEEECcccCCCC
Confidence 457787788886654442 223456666643321 1222334566666521111 1122444444 2
Q ss_pred ecccEEEEEEecCCC
Q 028261 94 EAGDYMACFWAVDHS 108 (211)
Q Consensus 94 ~~G~y~~Cf~n~~~~ 108 (211)
.+..|.||..+..+.
T Consensus 86 ~~e~YqfcYv~~~g~ 100 (546)
T PF07888_consen 86 DDEFYQFCYVDQKGE 100 (546)
T ss_pred CCCeEEEEEECCCcc
Confidence 355799999887654
No 48
>KOG2861 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.71 E-value=50 Score=28.74 Aligned_cols=54 Identities=17% Similarity=0.209 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028261 141 ELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWH 200 (211)
Q Consensus 141 ~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~sii~~~vli~~~~~Qv~~ 200 (211)
...++-|..+++.+.+..+.++ ..+++....++-||-|+-+.+-+++.+.|++.
T Consensus 339 ~qRv~vLN~kl~~i~~~~~~l~------e~ln~r~~~~LEWiIIiLI~~eV~i~i~~i~~ 392 (399)
T KOG2861|consen 339 GQRVNVLNYKLKVIEDLLDILQ------ENLNERHSERLEWIIIILIAFEVAIEIYQIVV 392 (399)
T ss_pred chHHHHHHHHHHHHHHHHHHHH------HHhhhccccceehhhHHHHHHHHHHHHHHHHH
Confidence 3455567777777777766665 34566677789999999998889999988753
No 49
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=47.22 E-value=81 Score=20.78 Aligned_cols=47 Identities=9% Similarity=0.100 Sum_probs=25.3
Q ss_pred eeEEEEEeC---CCcceEEEEcCCCcEEEEEEEEecCCCCCCCCCCceEEEEEEcCCC
Q 028261 20 QSLRFEIQS---AHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYG 74 (211)
Q Consensus 20 ~~l~f~l~~---g~~~Cf~~~v~~~~~i~~~y~v~~~~~~~~~~~~~~i~~~v~~p~g 74 (211)
.++.|.|.+ +...+....++.|+.....+.+... +.-.++.|+.|+|
T Consensus 32 ~~~~~~v~~~~y~~~~~~~~~v~ag~~~~~~w~l~~s--------~gwYDl~v~~~~~ 81 (89)
T PF05506_consen 32 AAVTFTVYDNAYGGGGPWTYTVAAGQTVSLTWPLAAS--------GGWYDLTVTGPNG 81 (89)
T ss_pred CcEEEEEEeCCcCCCCCEEEEECCCCEEEEEEeecCC--------CCcEEEEEEcCCC
Confidence 444555544 2244566666666666666555322 2355666666666
No 50
>PF14109 GldH_lipo: GldH lipoprotein
Probab=45.52 E-value=84 Score=22.65 Aligned_cols=45 Identities=9% Similarity=0.076 Sum_probs=28.5
Q ss_pred CceEEEEEEcCCCCeEEeeec-cceeeEEE----EeeecccEEEEEEecC
Q 028261 62 SHKLTVRVTSAYGNSYHYADR-VDSGQFAF----TAAEAGDYMACFWAVD 106 (211)
Q Consensus 62 ~~~i~~~v~~p~g~~i~~~~~-~~~g~~~f----~~~~~G~y~~Cf~n~~ 106 (211)
.+.+.+.+.||+|+.+-+.-+ ..+.++-+ ..+.+|.|.|.+.-..
T Consensus 67 ~dtl~~~Lad~~G~w~G~G~~~~~e~~~~~~~~~~f~~~G~Y~~~i~q~M 116 (131)
T PF14109_consen 67 TDTLECELADPDGKWLGKGIGDLYEYKLPYKENVRFPRKGSYTFTIEQAM 116 (131)
T ss_pred eeeEEEEEECCCCcEeeeeEeEeEEEEEEeecceecCCCCcEEEEEEecc
Confidence 357888888888887654332 22333333 3357899998887654
No 51
>PF12669 P12: Virus attachment protein p12 family
Probab=45.14 E-value=27 Score=21.44 Aligned_cols=10 Identities=30% Similarity=0.697 Sum_probs=6.9
Q ss_pred HHHHHhhhcc
Q 028261 200 HLKTFFEKKK 209 (211)
Q Consensus 200 ~lk~fF~~Kk 209 (211)
.++++++++|
T Consensus 16 ~~r~~~k~~K 25 (58)
T PF12669_consen 16 AIRKFIKDKK 25 (58)
T ss_pred HHHHHHHHhh
Confidence 3588887765
No 52
>COG1723 Uncharacterized conserved protein [Function unknown]
Probab=44.94 E-value=35 Score=28.63 Aligned_cols=54 Identities=13% Similarity=0.234 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028261 140 MELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLW 199 (211)
Q Consensus 140 l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~sii~~~vli~~~~~Qv~ 199 (211)
++...+-|+.+++.|.+..+.+. .+++++...++-||-++-+++-+++++.+++
T Consensus 271 I~~RvnvLN~Rl~vi~d~l~il~------e~ln~~~s~~lEWivIiLI~~eVllsl~~i~ 324 (331)
T COG1723 271 INPRVNVLNRRLEVISDLLDILN------EQLNHSHSTRLEWIVIILIGLEVLLSLYNII 324 (331)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH------HHhhhcccceeEEEehhHHHHHHHHHHHHHH
Confidence 34445555666666655554443 4566677788999999999999999987765
No 53
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=43.65 E-value=1.6e+02 Score=23.26 Aligned_cols=20 Identities=10% Similarity=0.217 Sum_probs=12.0
Q ss_pred ChHHHHHHHHHHHHHHHHHH
Q 028261 138 DVMELELKKLYDTVSSIHQE 157 (211)
Q Consensus 138 ~~l~~~l~~l~~~l~~i~~~ 157 (211)
-++...|.+|+.++.+..-.
T Consensus 11 ~~~~~~L~rle~qi~q~~~~ 30 (251)
T COG5415 11 TKYTADLSRLESQIHQLDVA 30 (251)
T ss_pred ccchhhHHHHHHHHHHHHHH
Confidence 46666666666665555433
No 54
>PRK15396 murein lipoprotein; Provisional
Probab=42.97 E-value=95 Score=20.37 Aligned_cols=28 Identities=14% Similarity=0.357 Sum_probs=18.3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 028261 136 SVDVMELELKKLYDTVSSIHQEMFYLRE 163 (211)
Q Consensus 136 ~~~~l~~~l~~l~~~l~~i~~~q~~~~~ 163 (211)
+++.+...++.|...+..+..+..-++.
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~ 53 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRS 53 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777777766655543
No 55
>PRK13211 N-acetylglucosamine-binding protein A; Reviewed
Probab=42.68 E-value=2.5e+02 Score=25.18 Aligned_cols=47 Identities=17% Similarity=0.191 Sum_probs=32.8
Q ss_pred CceEEEEEEcCCCCeEEee-eccceeeEEEEee----ecccEEEEEEecCCC
Q 028261 62 SHKLTVRVTSAYGNSYHYA-DRVDSGQFAFTAA----EAGDYMACFWAVDHS 108 (211)
Q Consensus 62 ~~~i~~~v~~p~g~~i~~~-~~~~~g~~~f~~~----~~G~y~~Cf~n~~~~ 108 (211)
+..|.++|+|..|+.+... .....+...++.. +.|.|.+=.....+.
T Consensus 340 ~~~vta~V~d~~g~~~~~~~~~v~d~s~~vtL~Ls~~~AG~y~Lvv~~t~~d 391 (478)
T PRK13211 340 DMNVEATVYNHDGEALGSKSQTVNDGSQSVSLDLSKLKAGHHMLVVKAKPKD 391 (478)
T ss_pred ceEEEEEEEcCCCCeeeeeeEEecCCceeEEEecccCCCceEEEEEEEEeCC
Confidence 4588889999999888554 2233344455443 689999999987654
No 56
>PRK09810 entericidin A; Provisional
Probab=42.00 E-value=29 Score=19.80 Aligned_cols=19 Identities=26% Similarity=0.412 Sum_probs=10.1
Q ss_pred ChhHHHHHHHHHHHHhhcc
Q 028261 1 MIRLTLTLVLVIGILSSTS 19 (211)
Q Consensus 1 ~~~~~~~~~~~l~~l~~~~ 19 (211)
||+..+.++++.++..+..
T Consensus 1 mMkk~~~l~~~~~~~L~aC 19 (41)
T PRK09810 1 MMKRLIVLVLLASTLLTGC 19 (41)
T ss_pred ChHHHHHHHHHHHHHHhhh
Confidence 6777666665444433433
No 57
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=40.35 E-value=1.1e+02 Score=20.42 Aligned_cols=45 Identities=18% Similarity=0.273 Sum_probs=26.0
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028261 136 SVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMA 180 (211)
Q Consensus 136 ~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~ 180 (211)
+++.+...++.|....+.+..+..-.+.--+.-.+-.+..|.|+=
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiD 69 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLD 69 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 556677777777777777776665555433333333444445543
No 58
>PF05015 Plasmid_killer: Plasmid maintenance system killer protein; InterPro: IPR007711 Several plasmids with proteic killer gene systems have been reported. All of them encode a stable toxin and an unstable antidote. Upon loss of the plasmid, the less stable inhibitor is inactivated more rapidly than the toxin, allowing the toxin to be activated. The activation of those systems result in cell filamentation and cessation of viable cell production. It has been verified that both the stable killer and the unstable inhibitor of the systems are short polypeptides. This family corresponds to the toxin.
Probab=39.41 E-value=70 Score=21.46 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=25.9
Q ss_pred CCCCeEEeeeccceeeEEEEeeecccEEEEEEecCC
Q 028261 72 AYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDH 107 (211)
Q Consensus 72 p~g~~i~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~~ 107 (211)
|-+...+.-.+...|.|+... +|.|++||.-...
T Consensus 49 ~p~~r~h~L~G~~~g~~Si~i--~~~~RliF~~~~~ 82 (93)
T PF05015_consen 49 PPSNRLHKLKGDRKGQWSIRI--NGNWRLIFRFEDG 82 (93)
T ss_pred CcCCCcccccCCCCCcEEEEe--CCCEEEEEEEeCC
Confidence 445666777777789988765 7789999997765
No 59
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=38.93 E-value=1.7e+02 Score=22.23 Aligned_cols=44 Identities=18% Similarity=0.250 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028261 142 LELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGF 185 (211)
Q Consensus 142 ~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~sii 185 (211)
.....+...+..++.+..-+.....+....++...+|++|..+.
T Consensus 57 ~~~~~l~~~l~~~~~el~~le~~k~~id~~A~~~~~~~~w~gl~ 100 (180)
T PF04678_consen 57 SRERQLRKRLEELRQELAPLEKIKQEIDEKAEKRARRLLWGGLA 100 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667778888888777777777777777777777775443
No 60
>PF11912 DUF3430: Protein of unknown function (DUF3430); InterPro: IPR021837 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 209 to 265 amino acids in length.
Probab=38.69 E-value=32 Score=26.61 Aligned_cols=33 Identities=24% Similarity=0.449 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHhhc-ceeEEEEEeCC-CcceE
Q 028261 2 IRLTLTLVLVIGILSST-SQSLRFEIQSA-HTKCI 34 (211)
Q Consensus 2 ~~~~~~~~~~l~~l~~~-~~~l~f~l~~g-~~~Cf 34 (211)
||++++|+++++++... ...-.+.+.|- ...|=
T Consensus 1 MKll~~lilli~~~~~~~~~~~yvn~~py~~~~Cs 35 (212)
T PF11912_consen 1 MKLLISLILLILLIINFSSSSQYVNFQPYQDSQCS 35 (212)
T ss_pred CcHHHHHHHHHHHHHhhhcCCcEEEEEEecCCCCC
Confidence 78876666666554432 44444544443 66775
No 61
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=38.18 E-value=1.6e+02 Score=23.09 Aligned_cols=58 Identities=16% Similarity=0.153 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Q 028261 139 VMELELKKLYDTVSSIHQEMFYLREREEEMQELNRV------TNSRMAWFSGFSLFICIAVAGM 196 (211)
Q Consensus 139 ~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es------~~~rv~~~sii~~~vli~~~~~ 196 (211)
+-+.+++...+.+..+..+..-.+++..+.....++ -.....|+..+.++++|+++++
T Consensus 105 ~W~~~i~~~~~~i~~ll~~a~~qqe~n~~~l~~Ld~w~~l~~wfdit~W~~~Iki~i~iv~~iI 168 (204)
T PF00517_consen 105 QWEKEISNYTGNIYNLLEEAQNQQEKNEQDLLKLDSWTNLWSWFDITKWLWYIKIFIMIVIGII 168 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHCHHHHHHHHHH---------
T ss_pred HHHHHhcccHHHHHHHHHHHHhchhhhhhhhcCCcHHhhhhhHHhHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555544443333443333333333 2333445555655555544443
No 62
>PHA02650 hypothetical protein; Provisional
Probab=37.98 E-value=43 Score=21.93 Aligned_cols=29 Identities=21% Similarity=0.061 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028261 175 TNSRMAWFSGFSLFICIAVAGMQLWHLKT 203 (211)
Q Consensus 175 ~~~rv~~~sii~~~vli~~~~~Qv~~lk~ 203 (211)
....-+++-++-+++++++.++-..|+|-
T Consensus 44 ~~~~~~~~~ii~i~~v~i~~l~~flYLK~ 72 (81)
T PHA02650 44 VSWFNGQNFIFLIFSLIIVALFSFFVFKG 72 (81)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555566666677777777764
No 63
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=37.93 E-value=76 Score=21.99 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=10.6
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHH
Q 028261 132 AKKGSVDVMELELKKLYDTVSSIH 155 (211)
Q Consensus 132 ak~e~~~~l~~~l~~l~~~l~~i~ 155 (211)
+++++++.+...+.+...+++.+.
T Consensus 32 a~~~~~~~l~~~~~~~~~Rl~~lE 55 (106)
T PF10805_consen 32 AKREDIEKLEERLDEHDRRLQALE 55 (106)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555444444344444333
No 64
>PF07125 DUF1378: Protein of unknown function (DUF1378); InterPro: IPR009808 This entry is represented by Bacteriophage 933W, Orf25. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of hypothetical bacterial and phage proteins of around 59 residues in length. Bacterial members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=37.67 E-value=62 Score=19.62 Aligned_cols=28 Identities=14% Similarity=0.501 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 028261 179 MAWFSGFSLFICIAVAGMQLWHLKTFFEKK 208 (211)
Q Consensus 179 v~~~sii~~~vli~~~~~Qv~~lk~fF~~K 208 (211)
++||+.+-..+.++.+.|- .+|.||++|
T Consensus 8 lLyFctvVcaLYLvsGGyk--~IRnY~r~K 35 (59)
T PF07125_consen 8 LLYFCTVVCALYLVSGGYK--VIRNYFRRK 35 (59)
T ss_pred HHHHHHHHHHHHHHhccHH--HHHHHHHHH
Confidence 5666666666666666654 578888766
No 65
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=36.90 E-value=1.1e+02 Score=21.10 Aligned_cols=36 Identities=11% Similarity=0.088 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028261 144 LKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRM 179 (211)
Q Consensus 144 l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv 179 (211)
+......++.+..+++-.-.+-+....++.+++.|+
T Consensus 62 V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRL 97 (102)
T PF01519_consen 62 VDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRL 97 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444433333344444555555553
No 66
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=36.19 E-value=1.1e+02 Score=21.35 Aligned_cols=43 Identities=23% Similarity=0.257 Sum_probs=28.6
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028261 136 SVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSR 178 (211)
Q Consensus 136 ~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~r 178 (211)
+++.+++.|..+...+..|+.+..++.+--...+--++....|
T Consensus 9 ~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~R 51 (114)
T COG4467 9 QVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRER 51 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHH
Confidence 4577888888888888888888777655444444444444433
No 67
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=36.16 E-value=51 Score=25.16 Aligned_cols=33 Identities=18% Similarity=0.218 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028261 175 TNSRMAWFSGFSLFICIAVAGMQLWHLKTFFEK 207 (211)
Q Consensus 175 ~~~rv~~~sii~~~vli~~~~~Qv~~lk~fF~~ 207 (211)
.+-|..+++.+-++++++++++|++.+-+--..
T Consensus 27 I~P~~~~~~~~a~i~l~ilai~q~~~~~~~~~~ 59 (182)
T PF09323_consen 27 IHPRYIPLLYFAAILLLILAIVQLWRWFRPKRR 59 (182)
T ss_pred hCccHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 567889999999999999999999887665544
No 68
>PF13850 ERGIC_N: Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
Probab=35.49 E-value=1.2e+02 Score=20.47 Aligned_cols=33 Identities=18% Similarity=0.251 Sum_probs=23.2
Q ss_pred CCCcEEEEEEEEecCCCCCCCCCCceEEEEEEcCCCCe
Q 028261 39 KSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNS 76 (211)
Q Consensus 39 ~~~~~i~~~y~v~~~~~~~~~~~~~~i~~~v~~p~g~~ 76 (211)
..+..+.+++.+.=+... =..+.+.+.|..|..
T Consensus 58 ~~~~~l~in~ditf~~~p-----C~~l~vDv~D~~G~~ 90 (96)
T PF13850_consen 58 SRDEKLQINFDITFPHMP-----CDFLSVDVQDASGDH 90 (96)
T ss_pred CCCceEEEEEEEEECCCc-----cCeeeeEeEccCCCe
Confidence 457788888888765332 247888888988864
No 69
>PF13544 N_methyl_2: Type IV pilin N-term methylation site GFxxxE; PDB: 3SOK_A 2HIL_L 1AY2_A 2PIL_A 2HI2_A 1OQW_A.
Probab=35.42 E-value=42 Score=17.63 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028261 175 TNSRMAWFSGFSLFICIAVAG 195 (211)
Q Consensus 175 ~~~rv~~~sii~~~vli~~~~ 195 (211)
..++-..|+++|+++.+++..
T Consensus 9 ~~~~~~GFTLiEllVa~~I~~ 29 (31)
T PF13544_consen 9 RRRRQRGFTLIELLVAMAILA 29 (31)
T ss_dssp ---------HHHHHHHHHHHH
T ss_pred cccccCCccHHHHHHHHHHHH
Confidence 345677899999988876654
No 70
>PF05404 TRAP-delta: Translocon-associated protein, delta subunit precursor (TRAP-delta); InterPro: IPR008855 This family consists of several eukaryotic translocon-associated protein, delta subunit precursors (TRAP-delta or SSR-delta). The exact function of this protein is unknown [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=34.44 E-value=2.1e+02 Score=21.78 Aligned_cols=58 Identities=12% Similarity=0.307 Sum_probs=30.4
Q ss_pred cEEEEEEEEecCCCCCCCCCCceEEEEEEcCCCCeEEeeeccceeeEEEEee------ecccEEEEEEecC
Q 028261 42 SMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAA------EAGDYMACFWAVD 106 (211)
Q Consensus 42 ~~i~~~y~v~~~~~~~~~~~~~~i~~~v~~p~g~~i~~~~~~~~g~~~f~~~------~~G~y~~Cf~n~~ 106 (211)
..+..+|.+.-.++ ..++.+...=+ |+++=-.+....++|..... ..|+|.+.|-...
T Consensus 41 ~afi~EFsl~C~n~------~~~~~LyAeV~-Gk~~PVar~~~~nkYQVSW~~e~k~a~sG~y~V~~fDEe 104 (167)
T PF05404_consen 41 TAFIAEFSLKCSNG------AKNISLYAEVN-GKILPVARSGDTNKYQVSWTEEHKKASSGTYEVKFFDEE 104 (167)
T ss_pred eEEEEEEEEEeCCC------CcCccEEEEEC-CEEEEEEEcCCCCceEEEEEechhhccCCceEEEEeChH
Confidence 34567788776542 23444443333 55442212112244444332 4799999988764
No 71
>PRK02710 plastocyanin; Provisional
Probab=34.35 E-value=1.6e+02 Score=20.58 Aligned_cols=18 Identities=33% Similarity=0.482 Sum_probs=11.5
Q ss_pred eeeEEEEeeecccEE-EEE
Q 028261 85 SGQFAFTAAEAGDYM-ACF 102 (211)
Q Consensus 85 ~g~~~f~~~~~G~y~-~Cf 102 (211)
...++++...+|.|. +|-
T Consensus 87 g~t~~~tF~~~G~y~y~C~ 105 (119)
T PRK02710 87 GESWEETFSEAGTYTYYCE 105 (119)
T ss_pred CCEEEEEecCCEEEEEEcC
Confidence 335666666689884 564
No 72
>PRK01844 hypothetical protein; Provisional
Probab=33.77 E-value=1.2e+02 Score=19.57 Aligned_cols=26 Identities=4% Similarity=0.051 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028261 182 FSGFSLFICIAVAGMQLWHLKTFFEK 207 (211)
Q Consensus 182 ~sii~~~vli~~~~~Qv~~lk~fF~~ 207 (211)
|-++-++.+++-.+.-.|.-|++|++
T Consensus 6 ~I~l~I~~li~G~~~Gff~ark~~~k 31 (72)
T PRK01844 6 GILVGVVALVAGVALGFFIARKYMMN 31 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444445556666666654
No 73
>PHA03054 IMV membrane protein; Provisional
Probab=33.69 E-value=54 Score=20.98 Aligned_cols=26 Identities=15% Similarity=0.106 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028261 177 SRMAWFSGFSLFICIAVAGMQLWHLK 202 (211)
Q Consensus 177 ~rv~~~sii~~~vli~~~~~Qv~~lk 202 (211)
.+-+++-++-++.++++.++-..|+|
T Consensus 45 ~~~~~~~ii~l~~v~~~~l~~flYLK 70 (72)
T PHA03054 45 CWGWYWLIIIFFIVLILLLLIYLYLK 70 (72)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555566666777777777776
No 74
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=33.58 E-value=1.5e+02 Score=23.95 Aligned_cols=26 Identities=23% Similarity=0.496 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028261 139 VMELELKKLYDTVSSIHQEMFYLRER 164 (211)
Q Consensus 139 ~l~~~l~~l~~~l~~i~~~q~~~~~r 164 (211)
.++.+|.+++..++.+..+++++..|
T Consensus 166 ~ie~~L~~v~~eIe~~~~~~~~l~~~ 191 (262)
T PF14257_consen 166 EIERELSRVRSEIEQLEGQLKYLDDR 191 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777777888888888777777766
No 75
>PRK00523 hypothetical protein; Provisional
Probab=33.30 E-value=1.3e+02 Score=19.43 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028261 181 WFSGFSLFICIAVAGMQLWHLKTFFEK 207 (211)
Q Consensus 181 ~~sii~~~vli~~~~~Qv~~lk~fF~~ 207 (211)
.|-++-++.+++-.+.=.|.-|++|++
T Consensus 6 l~I~l~i~~li~G~~~Gffiark~~~k 32 (72)
T PRK00523 6 LALGLGIPLLIVGGIIGYFVSKKMFKK 32 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455556666666653
No 76
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=33.28 E-value=4.2e+02 Score=24.96 Aligned_cols=43 Identities=14% Similarity=0.169 Sum_probs=31.2
Q ss_pred eEEEEEEcCCCCeEEeeeccceeeEEEEeeecccEEEEEEecC
Q 028261 64 KLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVD 106 (211)
Q Consensus 64 ~i~~~v~~p~g~~i~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~ 106 (211)
-..+.+.+++|...-.+.-.....|++++..+|.|++=....+
T Consensus 224 LYKF~~i~~~G~~~~~qdYst~n~~~y~~~~~G~Y~i~~~VKD 266 (667)
T PRK14081 224 LYKFVKIDSDGKQTCIQDYSTKNIVSYKEKKSGDYKLLCLVKD 266 (667)
T ss_pred EEEEEEECCCCCEEEecCccccceEEEEeCCCccEEEEEEEec
Confidence 4455566777766655554567899999999999998666654
No 77
>PHA02819 hypothetical protein; Provisional
Probab=32.78 E-value=66 Score=20.59 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028261 177 SRMAWFSGFSLFICIAVAGMQLWHLKT 203 (211)
Q Consensus 177 ~rv~~~sii~~~vli~~~~~Qv~~lk~ 203 (211)
.+-+++-++-++.++++.++-..|+|-
T Consensus 43 ~~~~~~~ii~l~~~~~~~~~~flYLK~ 69 (71)
T PHA02819 43 SFLRYYLIIGLVTIVFVIIFIIFYLKV 69 (71)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555666667777777777763
No 78
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=32.72 E-value=1.5e+02 Score=19.73 Aligned_cols=62 Identities=16% Similarity=0.267 Sum_probs=37.4
Q ss_pred cCCCcEEEEEEEEecCCCCCCCCCCceEEEEEEcCCCCeEEeeeccceeeEEEEeeecccEEEEEEecCC
Q 028261 38 IKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDH 107 (211)
Q Consensus 38 v~~~~~i~~~y~v~~~~~~~~~~~~~~i~~~v~~p~g~~i~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~~ 107 (211)
+.+...|+|... .++. |. .+--+.+.|++|+---.-.-.++|+|.|-+ .+|.+++---.+..
T Consensus 4 ~~ke~VItG~V~-~~G~---Pv---~gAyVRLLD~sgEFtaEvvts~~G~FRFfa-apG~WtvRal~~~g 65 (85)
T PF07210_consen 4 VEKETVITGRVT-RDGE---PV---GGAYVRLLDSSGEFTAEVVTSATGDFRFFA-APGSWTVRALSRGG 65 (85)
T ss_pred ccceEEEEEEEe-cCCc---CC---CCeEEEEEcCCCCeEEEEEecCCccEEEEe-CCCceEEEEEccCC
Confidence 334456677644 2222 22 234567789999854333334689999988 58888877665544
No 79
>PHA02975 hypothetical protein; Provisional
Probab=32.55 E-value=81 Score=20.07 Aligned_cols=27 Identities=15% Similarity=0.114 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028261 177 SRMAWFSGFSLFICIAVAGMQLWHLKT 203 (211)
Q Consensus 177 ~rv~~~sii~~~vli~~~~~Qv~~lk~ 203 (211)
++-++|-++-++.++++.++-..|+|-
T Consensus 41 ~~~~~~~ii~i~~v~~~~~~~flYLK~ 67 (69)
T PHA02975 41 SSLSIILIIFIIFITCIAVFTFLYLKL 67 (69)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555666677777777888888873
No 80
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=31.36 E-value=48 Score=16.71 Aligned_cols=15 Identities=27% Similarity=0.363 Sum_probs=9.5
Q ss_pred ChhHHHHHHHHHHHH
Q 028261 1 MIRLTLTLVLVIGIL 15 (211)
Q Consensus 1 ~~~~~~~~~~~l~~l 15 (211)
||+..+++++.++.|
T Consensus 6 mmKkil~~l~a~~~L 20 (25)
T PF08139_consen 6 MMKKILFPLLALFML 20 (25)
T ss_pred HHHHHHHHHHHHHHH
Confidence 467777766666554
No 81
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=31.27 E-value=32 Score=24.43 Aligned_cols=14 Identities=29% Similarity=0.741 Sum_probs=11.0
Q ss_pred cccEEEEEEecCCC
Q 028261 95 AGDYMACFWAVDHS 108 (211)
Q Consensus 95 ~G~y~~Cf~n~~~~ 108 (211)
.|.|++||.-....
T Consensus 116 ~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 116 EGSYRICFRLFNAT 129 (145)
T ss_pred CCceEEEEEEeccc
Confidence 69999999876543
No 82
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=30.80 E-value=2.4e+02 Score=24.09 Aligned_cols=87 Identities=15% Similarity=0.045 Sum_probs=53.1
Q ss_pred cccEEEEEEecC-----CCCceeEEEEEEEee-CccccCchhhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028261 95 AGDYMACFWAVD-----HSPQTTVTIDFDWRT-GVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEM 168 (211)
Q Consensus 95 ~G~y~~Cf~n~~-----~~~~~~v~v~~~~~~-g~~~~~~~~~ak~e~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~ 168 (211)
+|-=-+||+-.. +++.+.+.++||+.. +..-. .+.-++.=|-.+=-..|..|...|..|-.| =+..+-++|
T Consensus 211 ~GLsiisfS~ka~~~~~~rK~~~~~~yFd~~~~~~~wg-c~~e~~~yhhT~pv~lly~Lr~AL~~I~ee--GL~~~~~rH 287 (385)
T KOG2862|consen 211 AGLSIISFSDKALEAIRDRKTKPVSFYFDILRLGNFWG-CDGEPRAYHHTPPVQLLYSLRAALALIAEE--GLENSWRRH 287 (385)
T ss_pred CCcceeecCHHHHHHHhhccCCceEEEEeHHhhcchhc-cCCcccccccCCcHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 465559998652 224556889998732 21100 000112223344446688888889888766 566677788
Q ss_pred HHHHHHHHHHHHHHHH
Q 028261 169 QELNRVTNSRMAWFSG 184 (211)
Q Consensus 169 ~~~~es~~~rv~~~si 184 (211)
++..+-+.-++..|++
T Consensus 288 ~e~s~~l~~~l~~~GL 303 (385)
T KOG2862|consen 288 REMSKWLKLSLEALGL 303 (385)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 8888888777776653
No 83
>PRK04517 hypothetical protein; Provisional
Probab=30.76 E-value=2.7e+02 Score=21.96 Aligned_cols=28 Identities=7% Similarity=0.247 Sum_probs=12.8
Q ss_pred hhHHHHHHHHHHHHh-hccee-EEEEEeCC
Q 028261 2 IRLTLTLVLVIGILS-STSQS-LRFEIQSA 29 (211)
Q Consensus 2 ~~~~~~~~~~l~~l~-~~~~~-l~f~l~~g 29 (211)
|++...+++++++++ ..+.| .++.++++
T Consensus 1 MK~~~~~~~~~~l~~s~~a~A~vtL~~p~~ 30 (216)
T PRK04517 1 MKPIKPLTCLLALCFSGSASADVTMEVPDD 30 (216)
T ss_pred CCchHHHHHHHHHHhhhhhhheEEEeCCCc
Confidence 344344444444433 34444 66666643
No 84
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=30.21 E-value=1.7e+02 Score=19.47 Aligned_cols=9 Identities=11% Similarity=0.301 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 028261 176 NSRMAWFSG 184 (211)
Q Consensus 176 ~~rv~~~si 184 (211)
...++|+++
T Consensus 69 D~~li~~~~ 77 (92)
T PF03908_consen 69 DRILIFFAF 77 (92)
T ss_pred hHHHHHHHH
Confidence 334444443
No 85
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=29.81 E-value=1.4e+02 Score=18.42 Aligned_cols=12 Identities=25% Similarity=0.515 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHH
Q 028261 176 NSRMAWFSGFSL 187 (211)
Q Consensus 176 ~~rv~~~sii~~ 187 (211)
..+.++|+++-+
T Consensus 37 ~~~~i~~~~~i~ 48 (59)
T PF09889_consen 37 KTQYIFFGIFIL 48 (59)
T ss_pred HHHHHHHHHHHH
Confidence 345555555544
No 86
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=29.79 E-value=1.3e+02 Score=18.04 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=25.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028261 137 VDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRM 179 (211)
Q Consensus 137 ~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv 179 (211)
++.++..+..|......|..+..-.-..-++.-..++.+..++
T Consensus 6 l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l 48 (63)
T PF05739_consen 6 LDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENL 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHH
Confidence 4567777777777777777666555444444444444444443
No 87
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=29.48 E-value=1.9e+02 Score=21.50 Aligned_cols=44 Identities=25% Similarity=0.327 Sum_probs=29.6
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028261 135 GSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSR 178 (211)
Q Consensus 135 e~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~r 178 (211)
.+-+.++..+.+..+.+..++.+.+-++.+-+...........+
T Consensus 39 ~~~~~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~k 82 (151)
T PF14584_consen 39 KDGKNLEDLLNELFDQIDELKEELEELEKRIEELEEKLRNCVQK 82 (151)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 34457788888888888888888777766666555555544433
No 88
>PF10648 Gmad2: Immunoglobulin-like domain of bacterial spore germination; InterPro: IPR018911 This domain is found linked to IPR019606 from INTERPRO in some bacterial proteins. It is predicted to contain an immunoglobulin-like all-beta fold.
Probab=29.42 E-value=1.6e+02 Score=19.67 Aligned_cols=36 Identities=11% Similarity=0.087 Sum_probs=22.1
Q ss_pred CcEEEEEEEEecCCCCCCCCCCceEEEEEEcCCCCeEEee
Q 028261 41 NSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYA 80 (211)
Q Consensus 41 ~~~i~~~y~v~~~~~~~~~~~~~~i~~~v~~p~g~~i~~~ 80 (211)
|+.+...+.|..... ..+..+++.|.|..|+++.+.
T Consensus 11 g~~V~sp~~V~G~A~----~FEgtv~~rv~D~~g~vl~e~ 46 (88)
T PF10648_consen 11 GDTVSSPVKVSGKAR----VFEGTVNIRVRDGHGEVLAEG 46 (88)
T ss_pred cCCcCCCEEEEEEEE----EeeeEEEEEEEcCCCcEEEEe
Confidence 455555555543211 114489999999999998553
No 89
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=29.09 E-value=95 Score=17.63 Aligned_cols=24 Identities=13% Similarity=0.281 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcc
Q 028261 186 SLFICIAVAGMQLWHLKTFFEKKK 209 (211)
Q Consensus 186 ~~~vli~~~~~Qv~~lk~fF~~Kk 209 (211)
.++-+++++++-.+..|++..+|+
T Consensus 15 ~lVglv~i~iva~~iYRKw~aRkr 38 (43)
T PF08114_consen 15 CLVGLVGIGIVALFIYRKWQARKR 38 (43)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777788888888776
No 90
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=29.00 E-value=3e+02 Score=22.01 Aligned_cols=31 Identities=13% Similarity=0.358 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028261 177 SRMAWFSGFSLFICIAVAGMQLWHLKTFFEK 207 (211)
Q Consensus 177 ~rv~~~sii~~~vli~~~~~Qv~~lk~fF~~ 207 (211)
++...|-.+-++++++++++-++.+=++|++
T Consensus 212 sk~s~wf~~~miI~v~~sFVsMiliiqifkk 242 (244)
T KOG2678|consen 212 SKLSYWFYITMIIFVILSFVSMILIIQIFKK 242 (244)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3446667777788888888888888888875
No 91
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=28.93 E-value=1.4e+02 Score=18.23 Aligned_cols=47 Identities=15% Similarity=0.168 Sum_probs=27.8
Q ss_pred CceEEEEEEcCCCCeE-Eeee------ccceeeEEEEeeecccEEEEEEecCCC
Q 028261 62 SHKLTVRVTSAYGNSY-HYAD------RVDSGQFAFTAAEAGDYMACFWAVDHS 108 (211)
Q Consensus 62 ~~~i~~~v~~p~g~~i-~~~~------~~~~g~~~f~~~~~G~y~~Cf~n~~~~ 108 (211)
+..+.|....++|..+ |.|. ...+..+.++...+|.|.+.+......
T Consensus 11 g~~v~f~~~~~~g~~~~y~W~fgd~~~~~~~~~~t~ty~~~G~y~V~ltv~n~~ 64 (69)
T PF00801_consen 11 GQPVTFTASSSDGSPVTYSWDFGDNGTVSTGSSVTHTYSSPGTYTVTLTVTNGV 64 (69)
T ss_dssp TSEEEEEETTTTSSECEEEEE-SSESEEECSSEEEEEESSSEEEEEEEEEEETT
T ss_pred CCEEEEEEEccCCCCeEEEEEECCCCccccCCCEEEEcCCCeEEEEEEEEEECC
Confidence 3455555555444433 3321 112456777788899999998876543
No 92
>PHA02844 putative transmembrane protein; Provisional
Probab=28.55 E-value=83 Score=20.38 Aligned_cols=25 Identities=8% Similarity=0.034 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028261 178 RMAWFSGFSLFICIAVAGMQLWHLK 202 (211)
Q Consensus 178 rv~~~sii~~~vli~~~~~Qv~~lk 202 (211)
.-+++.++-++.++++.++-..|+|
T Consensus 46 ~~~~~~ii~i~~v~~~~~~~flYLK 70 (75)
T PHA02844 46 SSTKIWILTIIFVVFATFLTFLYLK 70 (75)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444556666667777777776
No 93
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=28.54 E-value=1.6e+02 Score=19.79 Aligned_cols=45 Identities=16% Similarity=0.223 Sum_probs=27.1
Q ss_pred eEEEEEEcCCCCeEEeeeccc---eeeEEEEee---ecccEEEEEEecCCC
Q 028261 64 KLTVRVTSAYGNSYHYADRVD---SGQFAFTAA---EAGDYMACFWAVDHS 108 (211)
Q Consensus 64 ~i~~~v~~p~g~~i~~~~~~~---~g~~~f~~~---~~G~y~~Cf~n~~~~ 108 (211)
.-.+.|.||+|+.+-...... ...+....+ .+|.|.+=...-...
T Consensus 34 ~s~v~v~~~~g~~v~~~~~~~~~~~~~~~~~l~~~l~~G~YtV~wrvvs~D 84 (97)
T PF04234_consen 34 FSSVTVTDPDGKRVDLGEPTVDGDGKTLTVPLPPPLPPGTYTVSWRVVSAD 84 (97)
T ss_dssp C-EEEEEEEEETTSCTCEEEEEESTTEEEEEESS---SEEEEEEEEEEETT
T ss_pred ccEEEEEcCCCceeecCcceecCCceEEEEECCCCCCCceEEEEEEEEecC
Confidence 557888899887653321111 235555544 489999998886544
No 94
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=28.38 E-value=1.6e+02 Score=18.69 Aligned_cols=41 Identities=15% Similarity=0.034 Sum_probs=28.6
Q ss_pred eEEEEEEcCCCCeEEeeeccceeeEEEEeeecccEEEEEEecC
Q 028261 64 KLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVD 106 (211)
Q Consensus 64 ~i~~~v~~p~g~~i~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~ 106 (211)
+.=+.|+|.+|+.+++..-.+...+++ .....+++=+-|..
T Consensus 8 ~sWv~V~d~dG~~~~~~~l~~G~~~~~--~~~~~~~i~iGna~ 48 (77)
T PF13464_consen 8 DSWVEVTDADGKVLFSGTLKAGETKTF--EGKEPFRIRIGNAG 48 (77)
T ss_pred CeEEEEEeCCCcEeeeeeeCCCcEEEE--eCCCCEEEEEeCCC
Confidence 456788999999999876555556666 44556666666554
No 95
>PRK06798 fliD flagellar capping protein; Validated
Probab=28.17 E-value=4e+02 Score=23.59 Aligned_cols=14 Identities=29% Similarity=0.323 Sum_probs=7.4
Q ss_pred HHHHHHHHHhhhcc
Q 028261 196 MQLWHLKTFFEKKK 209 (211)
Q Consensus 196 ~Qv~~lk~fF~~Kk 209 (211)
-|.-+|..+|..++
T Consensus 425 sQ~s~l~~~~~~~~ 438 (440)
T PRK06798 425 SQLKTIKAMTKQKS 438 (440)
T ss_pred HHHHHHHHHhcccc
Confidence 34455566655543
No 96
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=27.51 E-value=1.8e+02 Score=19.00 Aligned_cols=32 Identities=9% Similarity=0.304 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028261 150 TVSSIHQEMFYLREREEEMQELNRVTNSRMAW 181 (211)
Q Consensus 150 ~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~ 181 (211)
.++.+.+.-.-+......++......+++.+|
T Consensus 32 ~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~ 63 (89)
T PF00957_consen 32 KLEELEDKTEELSDNAKQFKKNAKKLKRKMWW 63 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555555555444
No 97
>KOG0518 consensus Actin-binding cytoskeleton protein, filamin [Cytoskeleton]
Probab=27.41 E-value=2.7e+02 Score=27.58 Aligned_cols=44 Identities=14% Similarity=0.153 Sum_probs=29.4
Q ss_pred CceEEEEEEcCCCCeE--E-eeeccc-eeeEEEEeeecccEEEEEEec
Q 028261 62 SHKLTVRVTSAYGNSY--H-YADRVD-SGQFAFTAAEAGDYMACFWAV 105 (211)
Q Consensus 62 ~~~i~~~v~~p~g~~i--~-~~~~~~-~g~~~f~~~~~G~y~~Cf~n~ 105 (211)
+..+.+.|.||+|+.. + .+.+.. ...++|.....|.|.+-+.-.
T Consensus 389 eg~levqV~gp~Gk~~~~~V~d~~~~~~h~vsY~pd~~G~y~i~v~~~ 436 (1113)
T KOG0518|consen 389 EGLLEVQVVGPEGKEKEVVVRDNGRGGIHIVTYVPDCPGRYLIVVFYG 436 (1113)
T ss_pred cceEEEEEECCCCCceeeEEEecCCCceEEEEEcCCCCCceEEEEEEC
Confidence 3458999999999743 2 222222 446777778899998876543
No 98
>PF03554 Herpes_UL73: UL73 viral envelope glycoprotein ; InterPro: IPR005211 This entry represents a conserved region found in a number of viral proteins: BLRF1, U46, 53, and UL73, collectively known as glycoprotein N. These UL73-like envelope glycoproteins, which associate in a high molecular mass complex with their counterpart protein gM, induce neutralizing antibody responses in the host. These glycoproteins are highly polymorphic, particularly in the N-terminal region [].; GO: 0019031 viral envelope
Probab=26.93 E-value=1.2e+02 Score=20.08 Aligned_cols=26 Identities=15% Similarity=0.098 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028261 176 NSRMAWFSGFSLFICIAVAGMQLWHL 201 (211)
Q Consensus 176 ~~rv~~~sii~~~vli~~~~~Qv~~l 201 (211)
.+-..+|+++..+++++.+++=+.|+
T Consensus 46 ~SFsSIW~iiN~~il~~A~~vyLry~ 71 (82)
T PF03554_consen 46 SSFSSIWAIINVVILLCAFCVYLRYL 71 (82)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467899999999888887665553
No 99
>PF05371 Phage_Coat_Gp8: Phage major coat protein, Gp8; InterPro: IPR008020 The major coat protein in the capsid of filamentous bacteriophage forms a helical assembly of about 7000 identical protomers, with each protomer comprised of 46 amino acids, after the cleavage of the signal peptide. Each protomer forms a slightly curved helix that combines to form a tubular structure that encapsulates the viral DNA [].; PDB: 1IFK_A 2C0W_A 2HI5_A 1FDM_A 1IFJ_A 2C0X_A 1IFI_A 1IFD_A 1MZT_A 1IFL_A ....
Probab=26.85 E-value=1.2e+02 Score=18.18 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 028261 186 SLFICIAVAGMQLWHLKTFFEK 207 (211)
Q Consensus 186 ~~~vli~~~~~Qv~~lk~fF~~ 207 (211)
-+++.+..+++-+.+.|+|+.+
T Consensus 30 ~vvv~v~gafigirlFKKf~sk 51 (52)
T PF05371_consen 30 PVVVLVTGAFIGIRLFKKFASK 51 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 3566677788888999998764
No 100
>PF05388 Carbpep_Y_N: Carboxypeptidase Y pro-peptide; InterPro: IPR008442 This signature is found at the N terminus of carboxypeptidase Y, which belong to MEROPS peptidase family S10. This region contains the signal peptide and pro-peptide regions [,].; GO: 0004185 serine-type carboxypeptidase activity, 0005773 vacuole
Probab=26.79 E-value=31 Score=24.38 Aligned_cols=23 Identities=13% Similarity=0.439 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHhhcceeEEE
Q 028261 2 IRLTLTLVLVIGILSSTSQSLRF 24 (211)
Q Consensus 2 ~~~~~~~~~~l~~l~~~~~~l~f 24 (211)
||+.-++++.+++++..++|+.+
T Consensus 1 Mkls~s~~~ala~~~~~a~als~ 23 (113)
T PF05388_consen 1 MKLSTSTLAALALLAGSANALSV 23 (113)
T ss_pred CchhHHHHHHHHHHHHHHHHhhh
Confidence 67777778888888888888888
No 101
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=26.78 E-value=79 Score=19.82 Aligned_cols=20 Identities=15% Similarity=0.142 Sum_probs=10.1
Q ss_pred hhHHHHHHHHHHHHhhccee
Q 028261 2 IRLTLTLVLVIGILSSTSQS 21 (211)
Q Consensus 2 ~~~~~~~~~~l~~l~~~~~~ 21 (211)
|+-.+++++++.+++.++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (92)
T TIGR02052 1 MKKLATLLALFVLTSLPAWA 20 (92)
T ss_pred ChhHHHHHHHHHHhcchhhh
Confidence 34455666666554444433
No 102
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=26.29 E-value=1e+02 Score=21.28 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=16.6
Q ss_pred eecccEEEEEEecCCCCceeEEEEEE
Q 028261 93 AEAGDYMACFWAVDHSPQTTVTIDFD 118 (211)
Q Consensus 93 ~~~G~y~~Cf~n~~~~~~~~v~v~~~ 118 (211)
.+.|.|.|=..|.+.. ..++|++.
T Consensus 75 ~E~G~YTf~a~N~~~~--~s~tF~l~ 98 (101)
T cd05860 75 TEGGTYTFLVSNSDAS--ASVTFNVY 98 (101)
T ss_pred hhCcEEEEEEECCCCe--EEEEEEEE
Confidence 4789999999998754 33444443
No 103
>PF06624 RAMP4: Ribosome associated membrane protein RAMP4; InterPro: IPR010580 This entry contains Serp1/Ramp4, which has been shown to interacts with target proteins during their translocation into the lumen of the endoplasmic reticulum. It has also been shown to protect unfolded target proteins against degradation during ER stress. It may facilitate glycosylation of target proteins after termination of ER stress and may modulate the use of N-glycosylation sites on target proteins [, ].
Probab=26.14 E-value=33 Score=21.51 Aligned_cols=23 Identities=22% Similarity=0.431 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028261 179 MAWFSGFSLFICIAVAGMQLWHL 201 (211)
Q Consensus 179 v~~~sii~~~vli~~~~~Qv~~l 201 (211)
=-||-.+-++|+++-+++|++..
T Consensus 38 gp~~L~l~iFVV~Gs~ifqiir~ 60 (63)
T PF06624_consen 38 GPWLLGLFIFVVCGSAIFQIIRS 60 (63)
T ss_pred CHHHHhhhheeeEcHHHHHHHHH
Confidence 35677778888899999999754
No 104
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=25.34 E-value=1.9e+02 Score=18.49 Aligned_cols=39 Identities=18% Similarity=0.216 Sum_probs=26.5
Q ss_pred eEEEEEEcCCCCeEEeeeccceeeEEEEeeecccEEEEEEecCC
Q 028261 64 KLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDH 107 (211)
Q Consensus 64 ~i~~~v~~p~g~~i~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~~ 107 (211)
++.+.+.++. ..... ..+|.|.+.. ..|.|.+-|+....
T Consensus 17 ~a~V~~~~~~---~~~~T-d~~G~F~i~~-~~g~~~l~is~~Gy 55 (88)
T PF13715_consen 17 GATVYLKNTK---KGTVT-DENGRFSIKL-PEGDYTLKISYIGY 55 (88)
T ss_pred CeEEEEeCCc---ceEEE-CCCeEEEEEE-cCCCeEEEEEEeCE
Confidence 5666666654 22222 2489999995 58999999987653
No 105
>PF09116 gp45-slide_C: gp45 sliding clamp, C terminal; InterPro: IPR015200 This domain is essential for the interaction of the gp45 sliding clamp with the corresponding polymerase. It adopts a DNA clamp fold, consisting of two alpha helices and two beta sheets - the fold is duplicated and has internal pseudo two-fold symmetry []. ; PDB: 1B8H_A 1B77_B 3U61_F 3U60_G 3U5Z_R 1CZD_B.
Probab=25.25 E-value=2.1e+02 Score=20.19 Aligned_cols=41 Identities=17% Similarity=0.297 Sum_probs=20.5
Q ss_pred EEEEEcCCCCeEEee-----eccceeeEEEEeee-ccc--EEEEEEecC
Q 028261 66 TVRVTSAYGNSYHYA-----DRVDSGQFAFTAAE-AGD--YMACFWAVD 106 (211)
Q Consensus 66 ~~~v~~p~g~~i~~~-----~~~~~g~~~f~~~~-~G~--y~~Cf~n~~ 106 (211)
++.+.+-+|+.+... .+..+-.|++.+.+ +|+ |.|||.-..
T Consensus 25 dl~~~~~~gkivv~~~~~~~~~~tsn~ysv~vge~~~~~~F~f~~k~eN 73 (112)
T PF09116_consen 25 DLCFVNDDGKIVVTDFNKDDKNDTSNSYSVEVGEYDGDNNFCFCFKMEN 73 (112)
T ss_dssp EEEEEEETTEEEEEEE-TTSTTS-S-SEEEEEEE--SS--EEEEEEGGG
T ss_pred eEEEEecCCEEEEEccccccccCCCCceEEEEeccCCCccEEEEEEece
Confidence 344455556655443 22335567776643 344 777776543
No 106
>PRK10301 hypothetical protein; Provisional
Probab=25.22 E-value=2.6e+02 Score=19.92 Aligned_cols=45 Identities=13% Similarity=0.112 Sum_probs=28.1
Q ss_pred eEEEEEEcCCCCeEEeeec---cc-eeeEEEEee---ecccEEEEEEecCCC
Q 028261 64 KLTVRVTSAYGNSYHYADR---VD-SGQFAFTAA---EAGDYMACFWAVDHS 108 (211)
Q Consensus 64 ~i~~~v~~p~g~~i~~~~~---~~-~g~~~f~~~---~~G~y~~Cf~n~~~~ 108 (211)
.-.+.+.|++|+.+..... .. ...+....+ .+|.|++=.+.-...
T Consensus 60 ~s~i~v~~~~g~~v~~~~~~~~~~~~~~~~v~l~~~L~~G~YtV~Wrvvs~D 111 (124)
T PRK10301 60 FSGATITGPKQENIKTLPAKRNEQDQKQLIVPLADSLKPGTYTVDWHVVSVD 111 (124)
T ss_pred ccEEEEEcCCCCEeccCCccccCCCCcEEEEECCCCCCCccEEEEEEEEecC
Confidence 4467888999987654321 11 223555442 589999998886543
No 107
>COG3915 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.87 E-value=1.5e+02 Score=21.82 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=20.6
Q ss_pred hhHHH-HHHHHHHH-HhhcceeEEEEEeCCCcceEE
Q 028261 2 IRLTL-TLVLVIGI-LSSTSQSLRFEIQSAHTKCIA 35 (211)
Q Consensus 2 ~~~~~-~~~~~l~~-l~~~~~~l~f~l~~g~~~Cf~ 35 (211)
||..+ ++++|+.+ |+..+.-+++.+..|....|.
T Consensus 4 ~r~ll~~fL~l~~~slaqa~~ilTiq~ad~~~~~ft 39 (155)
T COG3915 4 MRVLLLTFLALISSSLAQAEPILTIQIADGPTVSFT 39 (155)
T ss_pred HHHHHHHHHHHHhhHHhhcCceEEEEecCCCceeec
Confidence 56666 34444433 555556688887777777554
No 108
>PF06196 DUF997: Protein of unknown function (DUF997); InterPro: IPR010398 This is a family of predicted bacterial membrane protein with unknown function.
Probab=24.73 E-value=1.7e+02 Score=19.16 Aligned_cols=27 Identities=22% Similarity=0.204 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028261 181 WFSGFSLFICIAVAGMQLWHLKTFFEK 207 (211)
Q Consensus 181 ~~sii~~~vli~~~~~Qv~~lk~fF~~ 207 (211)
||-.-.++..++..+.=.+++|.+|+.
T Consensus 45 WF~~SCi~~~il~~~l~~~~vk~~Fkd 71 (80)
T PF06196_consen 45 WFFYSCIGGPILFIILVWLMVKFFFKD 71 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444445556677777778889999975
No 109
>PF07680 DoxA: TQO small subunit DoxA; InterPro: IPR011636 Thiosulphate:quinone oxidoreductase (TQO) catalyses one of the early steps in elemental sulphur oxidation. A novel TQO enzyme was purified from the thermo-acidophilic archaeon Acidianus ambivalens and shown to consist of a large subunit (DoxD) and a smaller subunit (DoxA). The DoxD- and DoxA-like two subunits are fused together in a single polypeptide in Q8AAF0 from SWISSPROT.
Probab=24.63 E-value=2.8e+02 Score=20.19 Aligned_cols=44 Identities=9% Similarity=0.063 Sum_probs=29.2
Q ss_pred CceEEEEEEcCCCCeEEeeeccc---------eeeEEEEeeecccEEEEEEecC
Q 028261 62 SHKLTVRVTSAYGNSYHYADRVD---------SGQFAFTAAEAGDYMACFWAVD 106 (211)
Q Consensus 62 ~~~i~~~v~~p~g~~i~~~~~~~---------~g~~~f~~~~~G~y~~Cf~n~~ 106 (211)
++-+.+.+.|++|+++.++.... ...|.-. -.+|.|.++.--..
T Consensus 46 sfl~~i~l~d~~g~vv~~~~~~~L~~lP~~~i~N~Yv~~-~~~g~~gl~vpLGa 98 (133)
T PF07680_consen 46 SFLIGIQLKDSTGHVVLNWDQEKLSSLPKSNIKNDYVAK-VKPGKHGLVVPLGA 98 (133)
T ss_pred ceeeEEEEECCCCCEEEEeCHHHhhhCChhHcCccEEcc-ccCCceeEEEEcCC
Confidence 56788999999999998875431 2233222 24788888776544
No 110
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=24.51 E-value=3e+02 Score=20.47 Aligned_cols=50 Identities=14% Similarity=0.329 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028261 140 MELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFI 189 (211)
Q Consensus 140 l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~sii~~~v 189 (211)
+...-..+......++..-.-+...+.+.....++...++.+|.-++.+.
T Consensus 33 l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~it 82 (157)
T PF04136_consen 33 LQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFEELDPIT 82 (157)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHH
Confidence 33333344444444445555666778888899999999999998887654
No 111
>PF02974 Inh: Protease inhibitor Inh; InterPro: IPR021140 This entry represents the metalloprotease inhibitor I38, as well as the outer membrane lipoprotein Omp19. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This family of proteins represent monomeric serralysin inhibitors of about 125 residues, which interact with specific metalloprotease which are synthesised by serralysin secretors and characterised by being plant, insect and animal pathogens. It is probable that the serralysin inhibitors protect the host from proteolysis during export of the protease. The members of this family belong to MEROPS proteinase inhibitor family I38, clan IK. X-ray crystallography of a complex between the Serratia marcescens protease, SmaPI, and the inhibitor of Erwinia chrysanthemi, Inh, reveals that Inh is folded into an eight-stranded b-barrel with an N-terminal trunk of 10 residues. Residues 1-5 occupy part of the extended active site of the proteinase, thereby preventing access of the substrate. Residues 6-10 form a linker that connects the N-terminal proteinase-binding peptide to the body of the b-barrel. The backbone carbonyl of Ser-1 interacts with the catalytic zinc; the Ser-2 side chain occupies the S1'-binding site and also forms a hydrogen bond to the carboxyl end of the catalytic Glu, whereas Leu-3 occupies the S2' recognition site. Penetration of the trunk region further than 5 residues into the substrate binding cleft appears to be prevented by the b-barrel, which itself interacts with the proteinase near its Met turn (19). Peptide mimetics of the trunk at concentrations up to about 100 mM do not inhibit the protease, demonstrating that the barrel is essential for inhibitory activity [, ]. Structurally and functionally these inhibitors are closely related to the lipocalins, fatty acid-binding proteins, avidins and the enigmatic triabin. Together these five protein families constitute the calycin superfamily []. The proteins are characterised by their high specificity for small hydrophobic molecules and by their ability to form complexes with soluble macromolecules either through intramolecular disulphides or protein-protein interactions []. ; PDB: 1JIW_I 2RN4_A 1SMP_I.
Probab=24.43 E-value=2e+02 Score=19.52 Aligned_cols=33 Identities=18% Similarity=0.247 Sum_probs=18.4
Q ss_pred EEEEEcCCCCeEEeeeccceeeEEEEeeecccE
Q 028261 66 TVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDY 98 (211)
Q Consensus 66 ~~~v~~p~g~~i~~~~~~~~g~~~f~~~~~G~y 98 (211)
.+.++|.+|+.+..-....+|.|.=..+.++.|
T Consensus 63 ~l~L~d~~G~~v~~f~~~~~g~~~g~~~~g~~~ 95 (99)
T PF02974_consen 63 GLVLTDADGSVVAFFYRSGDGRFEGQTPDGQPL 95 (99)
T ss_dssp EEEEE-TTS-EEEEEEEECTTEEEEEECCCEEE
T ss_pred EEEEECCCCCEEEEEEccCCeeEEeEcCCCCEE
Confidence 356678888877655545566766555444444
No 112
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=24.35 E-value=2.2e+02 Score=20.35 Aligned_cols=39 Identities=26% Similarity=0.244 Sum_probs=30.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028261 137 VDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVT 175 (211)
Q Consensus 137 ~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~ 175 (211)
++.+++.+..|+-+++.+.+..+-++.|-++.+..+.+.
T Consensus 72 ~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 72 VDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888888888888888877776665554
No 113
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=23.90 E-value=47 Score=29.08 Aligned_cols=19 Identities=21% Similarity=0.450 Sum_probs=15.3
Q ss_pred EEEeeecccEEEEEEecCC
Q 028261 89 AFTAAEAGDYMACFWAVDH 107 (211)
Q Consensus 89 ~f~~~~~G~y~~Cf~n~~~ 107 (211)
++.+.++|.+++||.|...
T Consensus 427 s~~C~EpGWFRvcFAn~~~ 445 (471)
T KOG0256|consen 427 SCHCHEPGWFRVCFANMSE 445 (471)
T ss_pred cceecCCCeEEEEeccCCH
Confidence 4667789999999998754
No 114
>PF02083 Urotensin_II: Urotensin II; InterPro: IPR001483 Urotensin II, a small peptide that contains a disulphide bridge, was originally isolated from the caudal portion of the spinal cord of teleost and elasmobranch fish []. The peptide has also been found in the brain of frogs []. Urotensin II seems to be involved in smooth muscle stimulation.; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=23.84 E-value=27 Score=14.24 Aligned_cols=8 Identities=13% Similarity=0.580 Sum_probs=5.3
Q ss_pred CCcceEEE
Q 028261 29 AHTKCIAE 36 (211)
Q Consensus 29 g~~~Cf~~ 36 (211)
+..+||+-
T Consensus 2 ~~~~CFWK 9 (12)
T PF02083_consen 2 GKSECFWK 9 (12)
T ss_pred Cccchhhh
Confidence 45678864
No 115
>TIGR02962 hdxy_isourate hydroxyisourate hydrolase. Members of this family, hydroxyisourate hydrolase, represent a distinct clade of transthyretin-related proteins. Bacterial members typically are encoded next to ureidoglycolate hydrolase and often near either xanthine dehydrogenase or xanthine/uracil permease genes and have been demonstrated to have hydroxyisourate hydrolase activity. In eukaryotes, a clade separate from the transthyretins (a family of thyroid-hormone binding proteins) has also been shown to have HIU hydrolase activity in urate catabolizing organisms. Transthyretin, then, would appear to be the recently diverged paralog of the more ancient HIUH family.
Probab=23.80 E-value=2.6e+02 Score=19.57 Aligned_cols=14 Identities=36% Similarity=0.235 Sum_probs=11.1
Q ss_pred ecccEEEEEEecCC
Q 028261 94 EAGDYMACFWAVDH 107 (211)
Q Consensus 94 ~~G~y~~Cf~n~~~ 107 (211)
.+|.|++.|+....
T Consensus 56 ~~G~Y~l~F~~g~Y 69 (112)
T TIGR02962 56 AAGIYKLRFDTGDY 69 (112)
T ss_pred CCeeEEEEEEhhhh
Confidence 47999999987643
No 116
>PF07963 N_methyl: Prokaryotic N-terminal methylation motif; InterPro: IPR012902 This short motif directs methylation of the conserved phenylalanine residue. It is most often found at the N terminus of pilins and other proteins involved in secretion, see IPR001082 from INTERPRO, IPR010271 from INTERPRO, IPR003413 from INTERPRO and IPR011453 from INTERPRO. This model describes many (but not all) examples of the N-terminal region of bacterial proteins that resemble type IV pilins at their N terminus []. This domain contains a cleavage site G^FxxxE followed by a hydrophobic stretch. The new N-terminal residue produced after cleavage, usually Phe, is methylated. Separate domains of the prepilin peptidase appear to be responsible for cleavage and methylation. Proteins with this N-terminal region include type IV pilins and other components of pilus biogenesis, competence proteins, and type II secretion proteins. Typically several proteins in a single operon have this region.
Probab=23.72 E-value=78 Score=14.96 Aligned_cols=12 Identities=25% Similarity=0.645 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHH
Q 028261 182 FSGFSLFICIAV 193 (211)
Q Consensus 182 ~sii~~~vli~~ 193 (211)
|+++|+++.+.+
T Consensus 3 FTLiE~~v~l~i 14 (20)
T PF07963_consen 3 FTLIELLVALAI 14 (20)
T ss_pred eeHHHHHHHHHH
Confidence 677887666544
No 117
>PRK14156 heat shock protein GrpE; Provisional
Probab=23.51 E-value=3.4e+02 Score=20.77 Aligned_cols=37 Identities=14% Similarity=0.204 Sum_probs=23.7
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028261 136 SVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELN 172 (211)
Q Consensus 136 ~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~ 172 (211)
.++.++..+..+.+.+.....+..-++.|..+-+...
T Consensus 35 ~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~ 71 (177)
T PRK14156 35 ELELANERADEFENKYLRAHAEMQNIQRRANEERQQL 71 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777777777666666655544443
No 118
>KOG3491 consensus Predicted membrane protein [Function unknown]
Probab=23.29 E-value=1e+02 Score=18.97 Aligned_cols=21 Identities=24% Similarity=0.547 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028261 180 AWFSGFSLFICIAVAGMQLWH 200 (211)
Q Consensus 180 ~~~sii~~~vli~~~~~Qv~~ 200 (211)
-|.-.+-++|+++.+++|++-
T Consensus 39 PwLlglFvFVVcGSa~FqIIr 59 (65)
T KOG3491|consen 39 PWLLGLFVFVVCGSALFQIIR 59 (65)
T ss_pred hHHHHHHHHHhhcHHHHHHHH
Confidence 355556778889999999864
No 119
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=22.96 E-value=2.7e+02 Score=19.38 Aligned_cols=25 Identities=20% Similarity=0.438 Sum_probs=13.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHH
Q 028261 137 VDVMELELKKLYDTVSSIHQEMFYL 161 (211)
Q Consensus 137 ~~~l~~~l~~l~~~l~~i~~~q~~~ 161 (211)
++.++..+..+.+.+..++.....+
T Consensus 10 l~~le~~l~~l~~~~~~LK~~~~~l 34 (107)
T PF06156_consen 10 LDQLEQQLGQLLEELEELKKQLQEL 34 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555665555555555554443
No 120
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.74 E-value=3.3e+02 Score=24.52 Aligned_cols=47 Identities=9% Similarity=0.053 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028261 140 MELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFS 186 (211)
Q Consensus 140 l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~sii~ 186 (211)
....|+.+.+.+.+++.++--...+-+++++-..+...|++.-.+.+
T Consensus 353 ~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikq 399 (508)
T KOG3091|consen 353 HRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQ 399 (508)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666665555555667777888888888888755443
No 121
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=22.72 E-value=4.1e+02 Score=21.36 Aligned_cols=22 Identities=9% Similarity=-0.223 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028261 179 MAWFSGFSLFICIAVAGMQLWH 200 (211)
Q Consensus 179 v~~~sii~~~vli~~~~~Qv~~ 200 (211)
-++|.++-++.+|++++.-+-+
T Consensus 198 sl~Wv~l~iG~iIi~tLtYvGw 219 (232)
T PF09577_consen 198 SLIWVMLSIGGIIIATLTYVGW 219 (232)
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 5678888887777777655543
No 122
>PRK14155 heat shock protein GrpE; Provisional
Probab=22.69 E-value=3.9e+02 Score=21.07 Aligned_cols=36 Identities=17% Similarity=0.166 Sum_probs=21.9
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028261 137 VDVMELELKKLYDTVSSIHQEMFYLREREEEMQELN 172 (211)
Q Consensus 137 ~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~ 172 (211)
++.++.++..+.+.+...+.+..-+|.|..+-+...
T Consensus 22 l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~ 57 (208)
T PRK14155 22 IEALKAEVAALKDQALRYAAEAENTKRRAEREMNDA 57 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666655544433
No 123
>PRK14149 heat shock protein GrpE; Provisional
Probab=22.52 E-value=3.7e+02 Score=20.86 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=23.9
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028261 135 GSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQEL 171 (211)
Q Consensus 135 e~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~ 171 (211)
+.+..++.++..+.+.+.....+..-++.|..+-+..
T Consensus 43 ~~~~~l~~e~~elkd~~lR~~AefEN~rKR~~kE~e~ 79 (191)
T PRK14149 43 EIKEDFELKYKEMHEKYLRVHADFENVKKRLERDKSM 79 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677778777777777777766666554444333
No 124
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=22.46 E-value=90 Score=21.62 Aligned_cols=27 Identities=19% Similarity=0.155 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028261 180 AWFSGFSLFICIAVAGMQLWHLKTFFE 206 (211)
Q Consensus 180 ~~~sii~~~vli~~~~~Qv~~lk~fF~ 206 (211)
-+|+++..++.++.++++...=|+|-+
T Consensus 7 ~~w~ii~a~~~~~~~~~~~~l~~~~a~ 33 (106)
T PF10805_consen 7 KNWGIIWAVFGIAGGIFWLWLRRTYAK 33 (106)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 478888888888888888777666644
No 125
>PRK12618 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=22.29 E-value=45 Score=24.48 Aligned_cols=12 Identities=50% Similarity=0.905 Sum_probs=7.4
Q ss_pred ChhHHHHHHHHH
Q 028261 1 MIRLTLTLVLVI 12 (211)
Q Consensus 1 ~~~~~~~~~~~l 12 (211)
|||+.+.++++|
T Consensus 1 ~~~~~~~~~~~~ 12 (141)
T PRK12618 1 MMRLVLLLLLLL 12 (141)
T ss_pred ChhHHHHHHHHh
Confidence 788766554444
No 126
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=22.26 E-value=2.3e+02 Score=18.92 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 028261 139 VMELELKKLYDTVSSIHQEMF 159 (211)
Q Consensus 139 ~l~~~l~~l~~~l~~i~~~q~ 159 (211)
.++.++..+...+..-.++..
T Consensus 40 ~lE~E~~~l~~~l~~~E~eL~ 60 (85)
T PF15188_consen 40 SLEKELNELKEKLENNEKELK 60 (85)
T ss_pred HHHHHHHHHHHHhhccHHHHH
Confidence 344444444444444444333
No 127
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=22.02 E-value=76 Score=21.60 Aligned_cols=15 Identities=13% Similarity=-0.020 Sum_probs=12.3
Q ss_pred EEEEEEcCCCCeEEe
Q 028261 65 LTVRVTSAYGNSYHY 79 (211)
Q Consensus 65 i~~~v~~p~g~~i~~ 79 (211)
-.+.++||+|+.+--
T Consensus 102 r~~~~~DPdGn~iei 116 (120)
T cd09011 102 RVVRFYDPDKHIIEV 116 (120)
T ss_pred EEEEEECCCCCEEEE
Confidence 578999999998743
No 128
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.01 E-value=2.3e+02 Score=20.16 Aligned_cols=25 Identities=4% Similarity=0.175 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028261 166 EEMQELNRVTNSRMAWFSGFSLFIC 190 (211)
Q Consensus 166 ~~~~~~~es~~~rv~~~sii~~~vl 190 (211)
.+...+.+.-..+++.|-++-++|.
T Consensus 85 ~r~~~~ar~sg~~l~~~m~~f~lV~ 109 (118)
T KOG3385|consen 85 GRLKTMARRSGISLLCWMAVFSLVA 109 (118)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHH
Confidence 3444455554445555555544443
No 129
>PF01606 Arteri_env: Arterivirus envelope protein; InterPro: IPR002556 This family consists of viral envelope proteins from the Arteriviridae; this includes Porcine reproductive and respiratory syndrome virus (PRRSV) envelope protein GP3 and Lactate dehydrogenase-elevating virus (LDV) structural glycoprotein. Arteriviruses consists of positive ssRNA and do not have a DNA stage.
Probab=22.00 E-value=3.7e+02 Score=20.61 Aligned_cols=29 Identities=21% Similarity=0.237 Sum_probs=22.2
Q ss_pred EEeCCCcceEEEEcCCCc---EEEEEEEEecC
Q 028261 25 EIQSAHTKCIAEDIKSNS---MTVGKYNVVNP 53 (211)
Q Consensus 25 ~l~~g~~~Cf~~~v~~~~---~i~~~y~v~~~ 53 (211)
.-.++.+.||+..+..|. .++++|.+-++
T Consensus 25 ~~~~nat~CfWFPl~~Gn~sfEL~vNyTvC~p 56 (214)
T PF01606_consen 25 AANSNATYCFWFPLVRGNFSFELTVNYTVCPP 56 (214)
T ss_pred EeCCCceEEEEEEeccCCceEEEEEeeEecCC
Confidence 445567999999998865 57889988654
No 130
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=21.97 E-value=2.1e+02 Score=17.67 Aligned_cols=32 Identities=22% Similarity=0.360 Sum_probs=24.7
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 028261 132 AKKGSVDVMELELKKLYDTVSSIHQEMFYLRE 163 (211)
Q Consensus 132 ak~e~~~~l~~~l~~l~~~l~~i~~~q~~~~~ 163 (211)
|-+|.++.+.+.+..|.++...+..|-.+++.
T Consensus 11 AVrEEVevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 11 AVREEVEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp T-TTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55677888889999998888888887776653
No 131
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=21.65 E-value=62 Score=22.07 Aligned_cols=7 Identities=43% Similarity=0.572 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 028261 6 LTLVLVI 12 (211)
Q Consensus 6 ~~~~~~l 12 (211)
++|.|+|
T Consensus 7 llL~l~L 13 (95)
T PF07172_consen 7 LLLGLLL 13 (95)
T ss_pred HHHHHHH
Confidence 3333443
No 132
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=21.54 E-value=3.3e+02 Score=19.90 Aligned_cols=30 Identities=33% Similarity=0.446 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 028261 181 WFSGFSLFICIAVAGMQLWHLKTFFEKKKL 210 (211)
Q Consensus 181 ~~sii~~~vli~~~~~Qv~~lk~fF~~Kkl 210 (211)
....++++.-+++.++.++...-||++||.
T Consensus 54 ~~~~~~~~~~~~~~~~~l~~~~lffkr~~~ 83 (149)
T PF10754_consen 54 ALWYFEVAINIAMWLFTLWLLYLFFKRKRR 83 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccch
Confidence 444567777788888889999999998874
No 133
>PF12276 DUF3617: Protein of unknown function (DUF3617); InterPro: IPR022061 This family of proteins is found in bacteria. Proteins in this family are typically between 155 and 179 amino acids in length. There is a single completely conserved residue C that may be functionally important.
Probab=21.07 E-value=56 Score=24.09 Aligned_cols=29 Identities=17% Similarity=0.348 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHHHH--hhcceeEEEEEeCCC
Q 028261 2 IRLTLTLVLVIGIL--SSTSQSLRFEIQSAH 30 (211)
Q Consensus 2 ~~~~~~~~~~l~~l--~~~~~~l~f~l~~g~ 30 (211)
||.++.++++++++ ..++.+-...+.||.
T Consensus 1 M~~~~~~~~~~~~~~~~~~~~a~~~~~kpGl 31 (162)
T PF12276_consen 1 MKRRLLLALALALLALAAAAAAAAPDIKPGL 31 (162)
T ss_pred CchHHHHHHHHHHHHhhcccccccCCCCCcc
Confidence 44555555555443 444444444555553
No 134
>PF07116 DUF1372: Protein of unknown function (DUF1372); InterPro: IPR010779 This entry is represented by Streptococcus phage Sfi11, Gp93. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Streptococcus bacteriophage sequences and related proteins from Streptococcus species. Members of this family are typically around 100 residues in length and their function is unknown.
Probab=20.94 E-value=1.4e+02 Score=20.61 Aligned_cols=30 Identities=10% Similarity=0.158 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028261 173 RVTNSRMAWFSGFSLFICIAVAGMQLWHLK 202 (211)
Q Consensus 173 es~~~rv~~~sii~~~vli~~~~~Qv~~lk 202 (211)
+....+...++.+-+++.+++++||+++.-
T Consensus 6 ~~~~~~~~~~~~~~il~s~~~~~~~v~~~~ 35 (104)
T PF07116_consen 6 KEKRDNLKRFATIIILISLLFNIWQVIYVI 35 (104)
T ss_pred HhhhhhHHHHHHHHHHHHHHHhHHHHhhhh
Confidence 334456777777888888899999997644
No 135
>PF15432 Sec-ASP3: Accessory Sec secretory system ASP3
Probab=20.91 E-value=3.3e+02 Score=19.64 Aligned_cols=43 Identities=19% Similarity=0.227 Sum_probs=24.9
Q ss_pred EEEEEEcCCCCeEEeeeccceeeEEEEeee-cccEEEEEEecCCC
Q 028261 65 LTVRVTSAYGNSYHYADRVDSGQFAFTAAE-AGDYMACFWAVDHS 108 (211)
Q Consensus 65 i~~~v~~p~g~~i~~~~~~~~g~~~f~~~~-~G~y~~Cf~n~~~~ 108 (211)
+.+..+|-.|+.+-..- ..+++..|+.++ .=.|++++-|....
T Consensus 72 lki~F~dr~~e~i~~~i-~k~~~~~F~yP~~aysY~I~LinaG~~ 115 (128)
T PF15432_consen 72 LKIIFFDRQGEEIEEQI-IKNDSFEFTYPEEAYSYTISLINAGCQ 115 (128)
T ss_pred EEEEEEccCCCEeeEEE-EecCceEEeCCCCceEEEEEEeeCCCC
Confidence 33444454455443322 234556777664 56889999887754
No 136
>PF03408 Foamy_virus_ENV: Foamy virus envelope protein ; InterPro: IPR005070 Expression of the envelope (Env) glycoprotein is essential for viral particle egress. This feature is unique to the Spumavirinae, a subclass of the Retroviridae. ; GO: 0019031 viral envelope
Probab=20.71 E-value=3.3e+02 Score=26.27 Aligned_cols=43 Identities=16% Similarity=0.026 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028261 161 LREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWHLKT 203 (211)
Q Consensus 161 ~~~re~~~~~~~es~~~rv~~~sii~~~vli~~~~~Qv~~lk~ 203 (211)
.+.|-...-.+.=+|..||+.|-++-+++++++.+-=+..+-|
T Consensus 43 t~~R~kY~~Y~~CATSTRim~Wilf~cvll~Iv~iscfvti~R 85 (981)
T PF03408_consen 43 TRMRCKYLCYLCCATSTRIMAWILFVCVLLSIVLISCFVTIAR 85 (981)
T ss_pred HHHhHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666678888999999999998777765555444444333
No 137
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=20.66 E-value=3.2e+02 Score=22.12 Aligned_cols=18 Identities=11% Similarity=0.191 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028261 178 RMAWFSGFSLFICIAVAG 195 (211)
Q Consensus 178 rv~~~sii~~~vli~~~~ 195 (211)
|+..|.++-+++++++.+
T Consensus 250 ki~c~gI~~iii~viv~v 267 (280)
T COG5074 250 KIRCYGICFIIIIVIVVV 267 (280)
T ss_pred ceehhhhHHHHHHHHHHH
Confidence 455666665555544433
No 138
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=20.60 E-value=2e+02 Score=23.36 Aligned_cols=38 Identities=8% Similarity=0.101 Sum_probs=20.7
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028261 136 SVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNR 173 (211)
Q Consensus 136 ~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~e 173 (211)
+++.+..++.+|...+.....+.+-+..|+.....-++
T Consensus 62 ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld 99 (263)
T PRK10803 62 QLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQID 99 (263)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666655555555555555555443333
No 139
>PHA03163 hypothetical protein; Provisional
Probab=20.56 E-value=2.7e+02 Score=18.71 Aligned_cols=25 Identities=8% Similarity=-0.034 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028261 176 NSRMAWFSGFSLFICIAVAGMQLWH 200 (211)
Q Consensus 176 ~~rv~~~sii~~~vli~~~~~Qv~~ 200 (211)
.+--.+|+++.++++++.++.-..|
T Consensus 55 ~SFSSIWaliNv~Ivl~A~~iyL~y 79 (92)
T PHA03163 55 LSFSSIWAILNVLIMLIACIIYCIY 79 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446789999998888877765544
No 140
>smart00338 BRLZ basic region leucin zipper.
Probab=20.45 E-value=2e+02 Score=17.57 Aligned_cols=30 Identities=23% Similarity=0.375 Sum_probs=17.4
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 028261 133 KKGSVDVMELELKKLYDTVSSIHQEMFYLR 162 (211)
Q Consensus 133 k~e~~~~l~~~l~~l~~~l~~i~~~q~~~~ 162 (211)
++.+++.++..+..|...-..+..+...+.
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~l~ 53 (65)
T smart00338 24 KKAEIEELERKVEQLEAENERLKKEIERLR 53 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666555554444
No 141
>PHA02665 hypothetical protein; Provisional
Probab=20.38 E-value=74 Score=25.19 Aligned_cols=29 Identities=21% Similarity=0.467 Sum_probs=25.0
Q ss_pred EeCCCcceEEEEcCCCcEEEEEEEEecCC
Q 028261 26 IQSAHTKCIAEDIKSNSMTVGKYNVVNPN 54 (211)
Q Consensus 26 l~~g~~~Cf~~~v~~~~~i~~~y~v~~~~ 54 (211)
.+||+++|.+-.+.........|.|.+++
T Consensus 25 ~ep~kkkc~ftkirt~~s~a~ry~vsdg~ 53 (322)
T PHA02665 25 FEPGKKKCVFTKIRTSSSLACRYAVSDGG 53 (322)
T ss_pred cccccceeEEEEEecchhhhheeeeccCc
Confidence 47899999999998888888899998775
No 142
>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog. In Drosophila melanogaster, this protein associates with the smoothened protein to transduce hedgehog signals, leading to the activation of wingless, decapentaplegic and patched itself. It participates in cell interactions that establish pattern within the segment and imaginal disks during development. The mouse homologue may play a role in epidermal development. The human Niemann-Pick C1 protein, defects in which cause Niemann-Pick type II disease, is also a member of this family. This protein is involved in the intracellular trafficking of cholesterol, and may play a role in vesicular trafficking in glia, a process that may be crucial for maintaining the structural functional integrity of nerve terminals.; GO: 0008158 hedgehog receptor activity, 0016020 membrane
Probab=20.19 E-value=2.9e+02 Score=26.39 Aligned_cols=45 Identities=13% Similarity=0.107 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028261 163 EREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWHLKTFFEK 207 (211)
Q Consensus 163 ~re~~~~~~~es~~~rv~~~sii~~~vli~~~~~Qv~~lk~fF~~ 207 (211)
.|.+|.++...++..-+..-++-.++.++.+++.+.+..+.||+.
T Consensus 730 ~~~~r~~~al~~~g~pv~~~~~st~l~~~~l~f~~~~~~~~ff~~ 774 (798)
T PF02460_consen 730 TRDERVAEALSSMGWPVLQGALSTFLGVLPLAFSPSYIFRVFFKT 774 (798)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 677888888888888888777777888888899999999999873
No 143
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=20.13 E-value=82 Score=19.35 Aligned_cols=20 Identities=40% Similarity=0.591 Sum_probs=15.4
Q ss_pred hhcCCCChHHHHHHHHHHHH
Q 028261 132 AKKGSVDVMELELKKLYDTV 151 (211)
Q Consensus 132 ak~e~~~~l~~~l~~l~~~l 151 (211)
+|+++.++++..|+++-+.|
T Consensus 36 ~kkq~~~~~eqKLDrIIeLL 55 (58)
T PF13314_consen 36 AKKQDVDSMEQKLDRIIELL 55 (58)
T ss_pred ccccchhHHHHHHHHHHHHH
Confidence 57777788999998876554
Done!