Query 028262
Match_columns 211
No_of_seqs 302 out of 958
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 08:47:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028262.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028262hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3260 Calcyclin-binding prot 100.0 6.9E-60 1.5E-64 383.0 14.8 210 1-210 1-224 (224)
2 PLN03088 SGT1, suppressor of 100.0 8.1E-37 1.7E-41 275.5 20.0 142 62-204 154-330 (356)
3 KOG1309 Suppressor of G2 allel 100.0 3.5E-35 7.5E-40 238.7 10.6 139 65-204 4-172 (196)
4 cd06468 p23_CacyBP p23_like do 99.9 3.7E-22 8E-27 147.1 10.9 89 64-152 1-92 (92)
5 cd06488 p23_melusin_like p23_l 99.9 3.8E-22 8.1E-27 146.5 10.5 87 65-152 1-87 (87)
6 cd06489 p23_CS_hSgt1_like p23_ 99.9 2.1E-21 4.6E-26 141.1 9.5 84 68-152 1-84 (84)
7 cd06465 p23_hB-ind1_like p23_l 99.9 8.4E-21 1.8E-25 144.3 11.9 96 66-164 2-102 (108)
8 COG5091 SGT1 Suppressor of G2 99.8 7.3E-21 1.6E-25 164.4 9.4 197 8-204 94-344 (368)
9 cd00237 p23 p23 binds heat sho 99.8 1.4E-19 3.1E-24 137.8 11.7 99 65-166 2-104 (106)
10 cd06466 p23_CS_SGT1_like p23_l 99.8 2.1E-19 4.5E-24 129.6 9.7 84 68-152 1-84 (84)
11 cd06493 p23_NUDCD1_like p23_NU 99.7 1.3E-17 2.9E-22 121.7 9.7 82 67-152 1-85 (85)
12 PF04969 CS: CS domain; Inter 99.7 2E-17 4.3E-22 116.8 10.3 77 65-142 1-79 (79)
13 PF05002 SGS: SGS domain ; In 99.7 1.2E-18 2.6E-23 126.4 2.2 56 147-204 3-58 (82)
14 cd06463 p23_like Proteins cont 99.7 4.3E-17 9.3E-22 115.9 10.0 83 69-152 1-84 (84)
15 cd06467 p23_NUDC_like p23_like 99.7 5.7E-17 1.2E-21 117.3 9.8 82 67-152 1-85 (85)
16 cd06469 p23_DYX1C1_like p23_li 99.7 5.9E-17 1.3E-21 115.4 9.3 78 69-152 1-78 (78)
17 cd06490 p23_NCB5OR p23_like do 99.7 2.3E-16 4.9E-21 116.0 9.9 83 67-152 1-87 (87)
18 cd06494 p23_NUDCD2_like p23-li 99.6 1.3E-15 2.9E-20 113.4 10.4 84 64-152 5-93 (93)
19 cd06495 p23_NUDCD3_like p23-li 99.6 2.5E-15 5.4E-20 113.7 11.1 92 64-156 4-98 (102)
20 KOG2265 Nuclear distribution p 99.6 1.1E-15 2.5E-20 124.3 9.5 129 63-206 17-150 (179)
21 cd06492 p23_mNUDC_like p23-lik 99.6 1.1E-14 2.5E-19 107.0 10.0 82 67-152 1-87 (87)
22 KOG3158 HSP90 co-chaperone p23 99.5 1.6E-14 3.4E-19 117.5 6.7 89 64-155 7-97 (180)
23 PF09032 Siah-Interact_N: Siah 99.5 1.3E-14 2.9E-19 104.6 3.6 40 2-41 5-44 (79)
24 KOG1667 Zn2+-binding protein M 99.3 3.9E-12 8.5E-17 109.1 8.4 93 62-155 212-305 (320)
25 cd00298 ACD_sHsps_p23-like Thi 99.2 8.7E-11 1.9E-15 81.2 7.6 73 69-142 1-80 (80)
26 COG0071 IbpA Molecular chapero 98.1 3.8E-05 8.2E-10 61.3 9.8 83 62-145 38-135 (146)
27 KOG4379 Uncharacterized conser 98.0 1E-05 2.2E-10 74.9 6.2 88 63-155 288-378 (596)
28 cd06472 ACD_ScHsp26_like Alpha 97.9 7.1E-05 1.5E-09 54.9 8.5 76 66-142 1-92 (92)
29 cd06464 ACD_sHsps-like Alpha-c 97.7 0.00031 6.6E-09 49.9 7.8 74 68-142 1-88 (88)
30 PF00011 HSP20: Hsp20/alpha cr 97.7 0.00051 1.1E-08 50.8 9.2 77 68-145 1-90 (102)
31 cd06471 ACD_LpsHSP_like Group 97.6 0.00053 1.1E-08 50.2 8.2 75 66-142 2-93 (93)
32 cd06475 ACD_HspB1_like Alpha c 96.8 0.0095 2.1E-07 43.4 8.1 72 68-140 4-84 (86)
33 cd06526 metazoan_ACD Alpha-cry 96.8 0.0067 1.5E-07 43.5 7.1 68 74-142 7-83 (83)
34 cd06497 ACD_alphaA-crystallin_ 96.8 0.0093 2E-07 43.5 7.7 72 70-142 6-86 (86)
35 cd06479 ACD_HspB7_like Alpha c 96.8 0.0091 2E-07 43.2 7.5 72 70-142 4-81 (81)
36 cd06498 ACD_alphaB-crystallin_ 96.7 0.011 2.4E-07 42.9 7.4 72 71-143 4-84 (84)
37 cd06470 ACD_IbpA-B_like Alpha- 96.5 0.03 6.4E-07 40.9 9.0 73 67-142 3-90 (90)
38 PRK10743 heat shock protein Ib 96.5 0.031 6.8E-07 44.3 9.5 76 65-143 35-124 (137)
39 cd06478 ACD_HspB4-5-6 Alpha-cr 96.4 0.018 3.8E-07 41.6 7.2 71 71-142 4-83 (83)
40 cd06476 ACD_HspB2_like Alpha c 95.9 0.056 1.2E-06 39.2 7.6 70 72-142 5-83 (83)
41 PRK11597 heat shock chaperone 95.9 0.082 1.8E-06 42.3 9.1 76 65-143 33-122 (142)
42 cd06481 ACD_HspB9_like Alpha c 95.5 0.076 1.7E-06 38.7 7.0 68 72-140 5-85 (87)
43 PF08190 PIH1: pre-RNA process 94.6 0.4 8.7E-06 42.4 10.4 65 72-140 259-326 (328)
44 cd06477 ACD_HspB3_Like Alpha c 93.9 0.53 1.1E-05 34.1 7.9 68 71-139 4-80 (83)
45 cd06482 ACD_HspB10 Alpha cryst 93.7 0.38 8.3E-06 35.2 7.0 67 71-138 5-83 (87)
46 PF05455 GvpH: GvpH; InterPro 90.0 2.6 5.7E-05 34.9 8.6 72 70-145 97-170 (177)
47 cd06480 ACD_HspB8_like Alpha-c 88.8 3.7 8E-05 30.3 7.8 68 72-140 13-89 (91)
48 PF08898 DUF1843: Domain of un 70.9 6.5 0.00014 26.3 3.3 31 7-37 14-52 (53)
49 PF09278 MerR-DNA-bind: MerR, 55.0 20 0.00044 23.8 3.5 38 4-41 12-54 (65)
50 PF11588 DUF3243: Protein of u 50.9 23 0.0005 25.7 3.4 33 165-197 45-77 (81)
51 PF08158 NUC130_3NT: NUC130/3N 49.6 35 0.00077 22.5 3.9 33 170-202 18-50 (52)
52 cd04782 HTH_BltR Helix-Turn-He 46.8 33 0.00073 25.0 3.9 34 8-41 59-92 (97)
53 PF12690 BsuPI: Intracellular 43.8 37 0.00079 24.3 3.6 56 76-134 2-59 (82)
54 PF04818 CTD_bind: RNA polymer 38.4 43 0.00093 22.3 3.1 25 170-194 29-53 (64)
55 PF02985 HEAT: HEAT repeat; I 37.2 80 0.0017 17.8 3.8 26 172-197 1-26 (31)
56 cd04777 HTH_MerR-like_sg1 Heli 36.1 60 0.0013 23.9 3.9 35 7-41 56-99 (107)
57 COG4856 Uncharacterized protei 35.6 1E+02 0.0022 28.8 5.8 66 77-146 71-138 (403)
58 PF10759 DUF2587: Protein of u 32.6 36 0.00077 27.7 2.2 32 9-40 43-75 (169)
59 PF12510 Smoothelin: Smootheli 32.5 1E+02 0.0023 20.6 4.1 30 7-36 22-51 (54)
60 PF09829 DUF2057: Uncharacteri 29.6 51 0.0011 27.0 2.7 25 169-193 164-188 (189)
61 COG3354 FlaG Putative archaeal 26.9 1.8E+02 0.0038 23.6 5.2 50 77-136 71-122 (154)
62 PRK09400 secE preprotein trans 26.3 1.1E+02 0.0024 20.8 3.5 30 2-31 7-36 (61)
63 PF09087 Cyc-maltodext_N: Cycl 25.9 2.3E+02 0.0049 20.8 5.3 36 62-97 37-72 (88)
64 PRK06746 peptide chain release 25.3 1.3E+02 0.0029 27.3 4.8 38 4-41 35-72 (326)
65 cd04788 HTH_NolA-AlbR Helix-Tu 25.1 1.2E+02 0.0025 22.1 3.7 33 8-41 59-91 (96)
66 TIGR00327 secE_euk_arch protei 24.8 1.1E+02 0.0024 20.9 3.2 30 2-31 3-32 (61)
67 cd01107 HTH_BmrR Helix-Turn-He 24.8 1.2E+02 0.0026 22.5 3.8 34 8-41 60-93 (108)
68 cd04770 HTH_HMRTR Helix-Turn-H 24.6 1.3E+02 0.0028 22.5 4.1 35 7-41 58-97 (123)
69 PF01361 Tautomerase: Tautomer 24.2 56 0.0012 21.2 1.7 20 179-198 7-26 (60)
70 cd04787 HTH_HMRTR_unk Helix-Tu 24.1 1.3E+02 0.0028 23.1 4.0 34 8-41 59-97 (133)
71 PF00159 Hormone_3: Pancreatic 24.0 1E+02 0.0022 18.9 2.6 22 2-23 14-35 (36)
72 COG0216 PrfA Protein chain rel 23.8 1.5E+02 0.0031 27.4 4.7 39 3-41 56-94 (363)
73 smart00340 HALZ homeobox assoc 23.3 56 0.0012 20.8 1.4 13 4-16 23-35 (44)
74 cd04786 HTH_MerR-like_sg7 Heli 23.2 1.2E+02 0.0027 23.4 3.7 34 8-41 59-96 (131)
75 PF09061 Stirrup: Stirrup; In 23.0 70 0.0015 22.4 2.0 22 170-191 53-75 (79)
76 PF14098 SSPI: Small, acid-sol 22.6 1.3E+02 0.0029 20.9 3.3 26 171-196 37-62 (65)
77 KOG3591 Alpha crystallins [Pos 22.1 4.4E+02 0.0096 21.5 8.5 72 72-144 70-150 (173)
78 PRK02289 4-oxalocrotonate taut 21.5 76 0.0017 20.9 1.9 27 179-205 8-34 (60)
79 KOG3247 Uncharacterized conser 21.5 51 0.0011 31.1 1.4 82 65-152 4-89 (466)
80 COG5509 Uncharacterized small 21.3 1.2E+02 0.0027 20.8 2.9 28 14-41 23-50 (65)
81 PRK09458 pspB phage shock prot 21.1 1.5E+02 0.0033 21.2 3.4 30 6-41 38-67 (75)
82 PF13670 PepSY_2: Peptidase pr 21.0 2.2E+02 0.0047 19.9 4.4 30 92-121 48-78 (83)
83 TIGR02047 CadR-PbrR Cd(II)/Pb( 20.5 1.5E+02 0.0032 22.7 3.6 34 8-41 59-97 (127)
84 cd04784 HTH_CadR-PbrR Helix-Tu 20.5 1.6E+02 0.0035 22.3 3.9 35 7-41 58-97 (127)
85 TIGR02044 CueR Cu(I)-responsiv 20.2 1.6E+02 0.0035 22.4 3.8 34 8-41 59-97 (127)
86 cd04768 HTH_BmrR-like Helix-Tu 20.2 1.6E+02 0.0035 21.2 3.7 34 7-41 58-91 (96)
No 1
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=100.00 E-value=6.9e-60 Score=382.99 Aligned_cols=210 Identities=45% Similarity=0.685 Sum_probs=188.0
Q ss_pred ChhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhhhhc--cCC--CCC--CCCCC----CCCCCccceeeccceeEe
Q 028262 1 MAEDLVLDLEELRQLRSIAKRPRIVSLINSEIHTLEKLSKE--EGP--APV--PTPAK----VSSTPALNYITLGSFSWD 70 (211)
Q Consensus 1 ~~~~l~~dl~E~~~ll~~a~r~~v~~~l~~~~~~~e~~~~~--~~~--~~~--~~~~~----~~~~~~~~~~~i~~y~W~ 70 (211)
|+|||++||+||++||++|+||||+++|+.|++++|++|.+ ++. ..+ ..|++ +.|.++.+.+.++.|+|+
T Consensus 1 ~~Eel~~DleEl~~ll~~Akr~RV~d~ltseks~~E~ei~n~~~~kak~kae~~~~~~~s~s~~pvs~~yl~~vt~ygWD 80 (224)
T KOG3260|consen 1 MAEELGLDLEELRQLLNIAKRPRVLDLLTSEKSNLEKEIDNAVSSKAKPKAEVTVPAPVSSSGKPVSSSYLNYVTLYGWD 80 (224)
T ss_pred ChhHhhccHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhccccCcccccCCCccccCCcchhhhHHHhhhcCcc
Confidence 78999999999999999999999999999999999999988 322 111 22222 223344455788899999
Q ss_pred ecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeCCCceeEEecCCcCCCccCCCceEEEeCCeEEEEEeecCCCCccc
Q 028262 71 QDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKASKGNWLD 150 (211)
Q Consensus 71 Qt~~~V~I~I~lk~v~~e~v~V~f~~~sl~v~i~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI~L~K~~~~~W~~ 150 (211)
|++++|++||++.||..++|+|+|+++||.+.+++++|++|.+.+++|+++|.|+.|+.+|++++|.|.|+|.+..+|..
T Consensus 81 Qs~kfVK~yItL~GV~eenVqv~ftp~Sldl~v~dlqGK~y~~~vnnLlk~I~vEks~~kvKtd~v~I~~kkVe~~rwd~ 160 (224)
T KOG3260|consen 81 QSNKFVKMYITLEGVDEENVQVEFTPMSLDLKVHDLQGKNYRMIVNNLLKPISVEKSSKKVKTDTVLILCKKVENTRWDY 160 (224)
T ss_pred ccCCeeEEEEEeecccccceeEEecccceeeeeeecCCcceeeehhhhccccChhhcccccccceEEEeehhhhcccchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888889999
Q ss_pred ccccC----CccCCCCCCCCCCchhHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 028262 151 LQYKE----DKLKPNLDKERDPMAGIMDLMKNMYEEGDDEMKRTIAKAWTDARSGKTADPLKGY 210 (211)
Q Consensus 151 L~~~e----~k~kp~~d~~~dp~~~l~~l~k~iY~~gDde~kRam~Ks~~ES~~k~~~~~~~~~ 210 (211)
|+..+ ++.+|+.+++.||++|||+|||+||+|||++|||||+|||+|||.|++..|..|+
T Consensus 161 Lt~~~Ke~Kek~kpsl~ke~DP~~glmnvmKk~YeDGD~~mK~tIaKAWtesr~k~a~g~~~g~ 224 (224)
T KOG3260|consen 161 LTQVEKECKEKEKPSLDKETDPSEGLMNVMKKIYEDGDDDMKQTIAKAWTESREKQAKGDTEGL 224 (224)
T ss_pred HHHHHHHHhhccCccccccCChHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhcCCccCC
Confidence 98544 2468999999999999999999999999999999999999999999999998885
No 2
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=100.00 E-value=8.1e-37 Score=275.53 Aligned_cols=142 Identities=23% Similarity=0.372 Sum_probs=126.5
Q ss_pred eeccceeEeecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeCCCceeEEecCCcCCCccCCCceEEEeCCeEEEEEe
Q 028262 62 ITLGSFSWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLF 141 (211)
Q Consensus 62 ~~i~~y~W~Qt~~~V~I~I~lk~v~~e~v~V~f~~~sl~v~i~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI~L~ 141 (211)
...+||+|||+.++|+|+|+++|++++++.|+|++++|+|.+...+|.+|.|.+ +||++|+|+.|+|+|.+++|+|+|+
T Consensus 154 ~~~~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~~-~L~~~I~p~~s~~~v~~~Kiei~l~ 232 (356)
T PLN03088 154 KPKYRHEFYQKPEEVVVTVFAKGVPAENVNVDFGEQILSVVIEVPGEDAYHLQP-RLFGKIIPDKCKYEVLSTKIEIRLA 232 (356)
T ss_pred CCccccceeecCCEEEEEEEecCCChHHcEEEeecCEEEEEEecCCCcceeecc-cccccccccccEEEEecceEEEEEe
Confidence 446899999999999999999999999999999999999999777788999986 9999999999999999999999999
Q ss_pred ecCCCCcccccccCCcc-----------------------CCCCCCC------------CCCchhHHHHHHHHhcCCCHH
Q 028262 142 KASKGNWLDLQYKEDKL-----------------------KPNLDKE------------RDPMAGIMDLMKNMYEEGDDE 186 (211)
Q Consensus 142 K~~~~~W~~L~~~e~k~-----------------------kp~~d~~------------~dp~~~l~~l~k~iY~~gDde 186 (211)
|+++++|++|+..+... +.+||+- .||+++||+|||+||++||||
T Consensus 233 K~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~dWdk~~~~~~~e~~~e~~~g~~~~~~~f~~iY~~~d~d 312 (356)
T PLN03088 233 KAEPITWASLEYGKGPAVLPKPNVSSEVSQRPAYPSSKKKKDDWDKLEAEVKKEEKDEKLDGDAALNKFFREIYQNADED 312 (356)
T ss_pred cCCCCCccccccCCccccccCCCCCcCcccCCCCCCCCCCCCChhhhhhhhhhhhhccccccchHHHHHHHHHHhcCCHH
Confidence 99988999998654210 1278741 246789999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCC
Q 028262 187 MKRTIAKAWTDARSGKTA 204 (211)
Q Consensus 187 ~kRam~Ks~~ES~~k~~~ 204 (211)
|||||||||+||+|..++
T Consensus 313 ~rram~KSf~eS~gt~ls 330 (356)
T PLN03088 313 TRRAMMKSFVESNGTVLS 330 (356)
T ss_pred HHHHHHHHhhhcCCeEEe
Confidence 999999999999998764
No 3
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=100.00 E-value=3.5e-35 Score=238.65 Aligned_cols=139 Identities=27% Similarity=0.452 Sum_probs=123.2
Q ss_pred cceeEeecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeCCCceeEEecCCcCCCccCCCceEEEeCCeEEEEEeecC
Q 028262 65 GSFSWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKAS 144 (211)
Q Consensus 65 ~~y~W~Qt~~~V~I~I~lk~v~~e~v~V~f~~~sl~v~i~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI~L~K~~ 144 (211)
.||+|||+.+.|+|+|+.++|+.++|.|.|+++.|++.+..++|..|.|.. .||++|+|+.|+|++.+.+|||+|.|.+
T Consensus 4 ~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~~~l~~~~~~~~g~~~~l~~-~L~~~I~pe~~s~k~~stKVEI~L~K~~ 82 (196)
T KOG1309|consen 4 IRHDWYQTETSVVITIFAKNVPKEDVNVEISENTLSIVIQLPSGSEYNLQL-KLYHEIIPEKSSFKVFSTKVEITLAKAE 82 (196)
T ss_pred ccceeecCCceEEEEEEecCCCccceeEEeecceEEEEEecCCchhhhhhH-HhcccccccceeeEeeeeeEEEEecccc
Confidence 589999999999999999999999999999999999999877888999976 8999999999999999999999999988
Q ss_pred CCCcccccccCCc-----------------cCC--CCCC--------CCCC---chhHHHHHHHHhcCCCHHHHHHHHHH
Q 028262 145 KGNWLDLQYKEDK-----------------LKP--NLDK--------ERDP---MAGIMDLMKNMYEEGDDEMKRTIAKA 194 (211)
Q Consensus 145 ~~~W~~L~~~e~k-----------------~kp--~~d~--------~~dp---~~~l~~l~k~iY~~gDde~kRam~Ks 194 (211)
...|..|..+... .+| |||+ +++| +|+||+||++||+++|||||||||||
T Consensus 83 ~irW~~Le~g~~~~~~~~~~vs~~~s~~Pssk~~kdWdkl~~e~~~eEe~e~l~dAAl~~lF~kiY~~addDvrRAM~KS 162 (196)
T KOG1309|consen 83 IIRWESLEKGKGSAVAPKPNVSSTASSYPSSKPAKDWDKLEKEEKKEEEDEKLEDAALNKLFQKIYSDADDDVRRAMMKS 162 (196)
T ss_pred chhhhhhhcccCcccccccccccccccCCCCCcccCHHHHHHHhhhhhhccchhHHHHHHHHHHHHhcCCHHHHHHHHhh
Confidence 7899999943210 022 7875 2345 78999999999999999999999999
Q ss_pred HHHhcCCCCC
Q 028262 195 WTDARSGKTA 204 (211)
Q Consensus 195 ~~ES~~k~~~ 204 (211)
|+||+|..++
T Consensus 163 f~ESnGTvLS 172 (196)
T KOG1309|consen 163 FSESNGTVLS 172 (196)
T ss_pred hhhcCCeEEe
Confidence 9999998754
No 4
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=99.88 E-value=3.7e-22 Score=147.07 Aligned_cols=89 Identities=47% Similarity=0.818 Sum_probs=83.0
Q ss_pred ccceeEeecCCEEEEEEEeCCCCC---CCcEEEEEeeEEEEEEEeCCCceeEEecCCcCCCccCCCceEEEeCCeEEEEE
Q 028262 64 LGSFSWDQDNEKVKIYISLEGVVQ---DKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIML 140 (211)
Q Consensus 64 i~~y~W~Qt~~~V~I~I~lk~v~~---e~v~V~f~~~sl~v~i~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI~L 140 (211)
+++|+|+|+.+.|+|+|+++++.. +++.|.|++++|+|.+.+.+|.+|.+.+++||++|+|++|+|++.+++|+|+|
T Consensus 1 ~~~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~~L~~~I~~e~s~~~~~~~ki~i~L 80 (92)
T cd06468 1 ITKYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDLNGKNYRFTINRLLKKIDPEKSSFKVKTDRIVITL 80 (92)
T ss_pred CceeeeecCCCEEEEEEEccCCCcCCcccEEEEecCCEEEEEEECCCCcEEEEEehHhhCccCccccEEEEeCCEEEEEE
Confidence 578999999999999999998755 99999999999999998777889999987799999999999999999999999
Q ss_pred eecCCCCccccc
Q 028262 141 FKASKGNWLDLQ 152 (211)
Q Consensus 141 ~K~~~~~W~~L~ 152 (211)
.|+++++|++|+
T Consensus 81 ~K~~~~~W~~L~ 92 (92)
T cd06468 81 AKKKEKKWESLT 92 (92)
T ss_pred EeCCCCccCccC
Confidence 999989999985
No 5
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=99.88 E-value=3.8e-22 Score=146.49 Aligned_cols=87 Identities=24% Similarity=0.298 Sum_probs=81.0
Q ss_pred cceeEeecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeCCCceeEEecCCcCCCccCCCceEEEeCCeEEEEEeecC
Q 028262 65 GSFSWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKAS 144 (211)
Q Consensus 65 ~~y~W~Qt~~~V~I~I~lk~v~~e~v~V~f~~~sl~v~i~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI~L~K~~ 144 (211)
+||+|||+++.|+|+|++++++++++.|.|++++++|.+...+|+.|.+.+ +||++|+|+.|+|++.+++|+|+|+|++
T Consensus 1 ~R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~l-~L~~~I~~~~s~~~v~~~kvei~L~K~~ 79 (87)
T cd06488 1 CRHDWHQTGSHVVVSVYAKNSNPELSVVEANSTVLTIHIVFEGNKEFQLDI-ELWGVIDVEKSSVNMLPTKVEIKLRKAE 79 (87)
T ss_pred CCccEeeCCCEEEEEEEECcCCccceEEEecCCEEEEEEECCCCceEEEEe-eccceEChhHcEEEecCcEEEEEEEeCC
Confidence 589999999999999999999999999999999988877555678899998 9999999999999999999999999999
Q ss_pred CCCccccc
Q 028262 145 KGNWLDLQ 152 (211)
Q Consensus 145 ~~~W~~L~ 152 (211)
+++|++|+
T Consensus 80 ~~~W~~Le 87 (87)
T cd06488 80 PGSWAKLE 87 (87)
T ss_pred CCcCccCC
Confidence 88999985
No 6
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=99.86 E-value=2.1e-21 Score=141.08 Aligned_cols=84 Identities=26% Similarity=0.442 Sum_probs=79.7
Q ss_pred eEeecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeCCCceeEEecCCcCCCccCCCceEEEeCCeEEEEEeecCCCC
Q 028262 68 SWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKASKGN 147 (211)
Q Consensus 68 ~W~Qt~~~V~I~I~lk~v~~e~v~V~f~~~sl~v~i~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI~L~K~~~~~ 147 (211)
+|||+++.|+|+|++++++++++.|+|++++|+|.+...+|.+|.+.+ +||++|+|++|+|++.+++|+|+|+|+++++
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~~~l~~~~~~~~~~~y~~~~-~L~~~I~p~~s~~~v~~~kiei~L~K~~~~~ 79 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEKRELSATVKLPSGNDYSLKL-HLLHPIVPEQSSYKILSTKIEIKLKKTEAIR 79 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeCCEEEEEEECCCCCcEEEee-ecCceecchhcEEEEeCcEEEEEEEcCCCCC
Confidence 699999999999999999999999999999999999876778899998 9999999999999999999999999998889
Q ss_pred ccccc
Q 028262 148 WLDLQ 152 (211)
Q Consensus 148 W~~L~ 152 (211)
|++|+
T Consensus 80 W~~Le 84 (84)
T cd06489 80 WSKLE 84 (84)
T ss_pred CccCC
Confidence 99985
No 7
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=99.85 E-value=8.4e-21 Score=144.26 Aligned_cols=96 Identities=28% Similarity=0.412 Sum_probs=85.7
Q ss_pred ceeEeecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeC-CCceeEEecCCcCCCccCCCceEEEeCCeEEEEEeecC
Q 028262 66 SFSWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDV-QGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKAS 144 (211)
Q Consensus 66 ~y~W~Qt~~~V~I~I~lk~v~~e~v~V~f~~~sl~v~i~~~-~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI~L~K~~ 144 (211)
.|+|+||.+.|+|+|+++++ +++.|.|++++|+|.+.+. ++++|.+.+ +||++|+|++|+|++.+++|+|+|+|++
T Consensus 2 ~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~~~l~v~~~~~~~~~~y~~~~-~L~~~I~pe~s~~~v~~~kveI~L~K~~ 78 (108)
T cd06465 2 PVLWAQRSDVVYLTIELPDA--KDPKIKLEPTSLSFKAKGGGGGKKYEFDL-EFYKEIDPEESKYKVTGRQIEFVLRKKE 78 (108)
T ss_pred ceeeeECCCEEEEEEEeCCC--CCcEEEEECCEEEEEEEcCCCCeeEEEEe-EhhhhccccccEEEecCCeEEEEEEECC
Confidence 59999999999999999997 8999999999999999764 577899987 9999999999999999999999999999
Q ss_pred -CCCcccccccCCcc---CCCCCC
Q 028262 145 -KGNWLDLQYKEDKL---KPNLDK 164 (211)
Q Consensus 145 -~~~W~~L~~~e~k~---kp~~d~ 164 (211)
+++|++|+..+.+. +++|+.
T Consensus 79 ~~~~W~~L~~~~~k~~~~~~d~~~ 102 (108)
T cd06465 79 AGEYWPRLTKEKGKLPWLKVDFDK 102 (108)
T ss_pred CCCCCcccccCCCCCCceECCchh
Confidence 78999999866553 456655
No 8
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=99.84 E-value=7.3e-21 Score=164.38 Aligned_cols=197 Identities=15% Similarity=0.219 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHhhhhhc--cCC-----CCCCCC-------------------CCCCCCCccce
Q 028262 8 DLEELRQLRSIAKRPRIVSLINSEIHTLEKLSKE--EGP-----APVPTP-------------------AKVSSTPALNY 61 (211)
Q Consensus 8 dl~E~~~ll~~a~r~~v~~~l~~~~~~~e~~~~~--~~~-----~~~~~~-------------------~~~~~~~~~~~ 61 (211)
|-+--+.-...|+.--|.+-|..=.-.||+.+.. ++| .+...| ...-.++....
T Consensus 94 ~Ye~a~~~F~~A~~~~~~d~L~~We~rLet~L~~~~kkQ~~~Tnk~~I~~vEs~e~~GD~~~~~S~~sP~~~~~~~qE~~ 173 (368)
T COG5091 94 DYELAQSYFKKAKNLYVDDTLPLWEDRLETKLNKKNKKQKDSTNKHTIKPVESIENRGDNNSSHSPISPLKIETAPQESP 173 (368)
T ss_pred HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHhHhhHhhccccCCCCCCchhhhhccCccccccCCCCccccccCcccCc
Confidence 4444455666777777888787777777776543 211 111011 00001111122
Q ss_pred eeccceeEeecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeCCCceeEEecCCcCCCccCCCceEEEeCCeEEEEEe
Q 028262 62 ITLGSFSWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLF 141 (211)
Q Consensus 62 ~~i~~y~W~Qt~~~V~I~I~lk~v~~e~v~V~f~~~sl~v~i~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI~L~ 141 (211)
.--.+|+|.||...+.|.|+-+.|..++|..-+.++.|+|.+....+.-+......||++|+|+.+++++.+.+++++|+
T Consensus 174 ~~~i~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~NTL~I~~q~~~~~~~~~~~~~Ly~ev~P~~~s~k~fsK~~e~~l~ 253 (368)
T COG5091 174 KMEIAYDFSETSDTAIIFIYRPPVGDEQVSPVLEGNTLSISYQPRRLRLWNDITISLYKEVYPDIRSIKSFSKRVEVHLR 253 (368)
T ss_pred cceeeeeccccceeEEEEEecCCCCccccceeecCCcceeeeeccccchHHHhhhhhhhhcCcchhhhhhcchhheehhh
Confidence 22346888888888888888888888999999999999999876655554444459999999999999999999999999
Q ss_pred ecCCCCcccccccC----------Cc----c-----CC--CCCC-----CCCC--chhHHHHHHHHhcCCCHHHHHHHHH
Q 028262 142 KASKGNWLDLQYKE----------DK----L-----KP--NLDK-----ERDP--MAGIMDLMKNMYEEGDDEMKRTIAK 193 (211)
Q Consensus 142 K~~~~~W~~L~~~e----------~k----~-----kp--~~d~-----~~dp--~~~l~~l~k~iY~~gDde~kRam~K 193 (211)
|.+...|..|.... ++ . ++ ||++ +.|. ..++.+||+++|+++||||||||||
T Consensus 254 KV~~v~W~~l~~~pa~~S~~l~~e~~N~~SAt~~s~~k~~Dw~~l~~~~~~dEe~ps~~dslFqklY~~addDtrRAMmK 333 (368)
T COG5091 254 KVEMVRWGGLNGRPADESSRLSDEGKNSDSATPKSSKKQDDWKELMVEDSGDEENPSVMDSLFQKLYQRADDDTRRAMMK 333 (368)
T ss_pred hhhhhhhcccccCccccccccccccccccccCCccccccccHHHhhhhhcccccCchHHHHHHHHHHhcCCchHHHHHHH
Confidence 99988999998532 00 0 12 6744 2222 2235569999999999999999999
Q ss_pred HHHHhcCCCCC
Q 028262 194 AWTDARSGKTA 204 (211)
Q Consensus 194 s~~ES~~k~~~ 204 (211)
||+||+|..++
T Consensus 334 Sf~ESnGTaLS 344 (368)
T COG5091 334 SFYESNGTALS 344 (368)
T ss_pred HHhhcCCceec
Confidence 99999998764
No 9
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=99.82 E-value=1.4e-19 Score=137.78 Aligned_cols=99 Identities=17% Similarity=0.249 Sum_probs=86.1
Q ss_pred cceeEeecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeCCCceeEEecCCcCCCccCCCceEEEeCCeEEEEEeecC
Q 028262 65 GSFSWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKAS 144 (211)
Q Consensus 65 ~~y~W~Qt~~~V~I~I~lk~v~~e~v~V~f~~~sl~v~i~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI~L~K~~ 144 (211)
+.+.|+|+.+.|+|+|.+++ .+++.|+|++++|+|...+.+|.+|.+.+ +||++|+|++|++++++++|+|.|+|++
T Consensus 2 p~v~WaQr~~~V~ltI~v~d--~~d~~v~l~~~~l~f~~~~~~g~~y~~~l-~l~~~I~pe~Sk~~v~~r~ve~~L~K~~ 78 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVED--SKDVKVDFEKSKLTFSCLNGDNVKIYNEI-ELYDRVDPNDSKHKRTDRSILCCLRKGK 78 (106)
T ss_pred CcceeeECCCEEEEEEEeCC--CCCcEEEEecCEEEEEEECCCCcEEEEEE-EeecccCcccCeEEeCCceEEEEEEeCC
Confidence 46899999999999999998 48999999999999998655778899887 9999999999999999999999999998
Q ss_pred CC-CcccccccCCcc---CCCCCCCC
Q 028262 145 KG-NWLDLQYKEDKL---KPNLDKER 166 (211)
Q Consensus 145 ~~-~W~~L~~~e~k~---kp~~d~~~ 166 (211)
++ +|++|++...+. ++|||+-.
T Consensus 79 ~~~~WprL~k~~~k~~~lk~DfdkW~ 104 (106)
T cd00237 79 EGVAWPRLTKEKAKPNWLSVDFDNWR 104 (106)
T ss_pred CCCCCchhhcCCCCCCcEECcchhcc
Confidence 65 999999755442 55777643
No 10
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=99.81 E-value=2.1e-19 Score=129.60 Aligned_cols=84 Identities=35% Similarity=0.515 Sum_probs=78.5
Q ss_pred eEeecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeCCCceeEEecCCcCCCccCCCceEEEeCCeEEEEEeecCCCC
Q 028262 68 SWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKASKGN 147 (211)
Q Consensus 68 ~W~Qt~~~V~I~I~lk~v~~e~v~V~f~~~sl~v~i~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI~L~K~~~~~ 147 (211)
+|+|+++.|+|+|+++|+.++++.|.|++++|.|.+...++++|.+.+ +||++|+|++|+|++.+++|+|+|+|+.+++
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~~~l~i~~~~~~~~~~~~~~-~L~~~I~~~~s~~~~~~~~vei~L~K~~~~~ 79 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNEQSLSVSIILPGGSEYQLEL-DLFGPIDPEQSKVSVLPTKVEITLKKAEPGS 79 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEecCEEEEEEECCCCCeEEEec-ccccccCchhcEEEEeCeEEEEEEEcCCCCC
Confidence 699999999999999999999999999999999998754467899988 8999999999999999999999999999899
Q ss_pred ccccc
Q 028262 148 WLDLQ 152 (211)
Q Consensus 148 W~~L~ 152 (211)
|++|+
T Consensus 80 W~~L~ 84 (84)
T cd06466 80 WPSLE 84 (84)
T ss_pred CccCC
Confidence 99984
No 11
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=99.74 E-value=1.3e-17 Score=121.66 Aligned_cols=82 Identities=20% Similarity=0.414 Sum_probs=71.7
Q ss_pred eeEeecCCEEEEEEEeC-CCCCCCcEEEEEeeEEEEEEEeCCCceeEEecCCcCCCccCCCceEEEeCC-eEEEEEeecC
Q 028262 67 FSWDQDNEKVKIYISLE-GVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPT-RVVIMLFKAS 144 (211)
Q Consensus 67 y~W~Qt~~~V~I~I~lk-~v~~e~v~V~f~~~sl~v~i~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~-kIeI~L~K~~ 144 (211)
|+|+||.+.|.|+|+++ +++++++.|.|++++|.|.+. ++.. +..++||+.|+|++|+|++.++ +|+|+|.|++
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~--~~~~--~~~g~L~~~I~~d~Stw~i~~~~~l~i~L~K~~ 76 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLPDHISIALK--DQAP--LLEGKLYSSIDHESSTWIIKENKSLEVSLIKKD 76 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEecCEEEEEeC--CCCe--EEeCcccCcccccCcEEEEeCCCEEEEEEEECC
Confidence 89999999999999995 889999999999999999874 2222 3356999999999999999766 6999999999
Q ss_pred CC-Cccccc
Q 028262 145 KG-NWLDLQ 152 (211)
Q Consensus 145 ~~-~W~~L~ 152 (211)
++ +|++|.
T Consensus 77 ~~~~W~~L~ 85 (85)
T cd06493 77 EGPTWPELV 85 (85)
T ss_pred CCccccccC
Confidence 77 999983
No 12
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=99.74 E-value=2e-17 Score=116.82 Aligned_cols=77 Identities=27% Similarity=0.477 Sum_probs=69.0
Q ss_pred cceeEeecCCEEEEEEEeCCC--CCCCcEEEEEeeEEEEEEEeCCCceeEEecCCcCCCccCCCceEEEeCCeEEEEEee
Q 028262 65 GSFSWDQDNEKVKIYISLEGV--VQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFK 142 (211)
Q Consensus 65 ~~y~W~Qt~~~V~I~I~lk~v--~~e~v~V~f~~~sl~v~i~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI~L~K 142 (211)
++|+|+|+.+.|+|+|++++. .++++.|+|++++|.|.+...+|..|.+.. +||++|+|++|+|++.+++|+|+|+|
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~~~~~~~~~~~~-~L~~~I~~~~s~~~~~~~~i~i~L~K 79 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDTSLSVSIKSGDGKEYLLEG-ELFGEIDPDESTWKVKDNKIEITLKK 79 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETTEEEEEEEETTSCEEEEEE-EBSS-BECCCEEEEEETTEEEEEEEB
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEeeEEEEEEEccCCceEEEEE-EEeeeEcchhcEEEEECCEEEEEEEC
Confidence 589999999999999999765 489999999999999999876668888876 89999999999999999999999987
No 13
>PF05002 SGS: SGS domain ; InterPro: IPR007699 This domain was thought to be unique to the SGT1-like proteins, but is also found in calcyclin binding proteins. Sgt1p is a highly conserved eukaryotic protein that is required for both SCF (Skp1p/Cdc53p-Cullin-F-box)-mediated ubiquitination and kinetochore function in yeast and also plays a role in the cAMP pathway. Calcyclin (S100A6) is a member of the S100A family of calcium binding proteins and appears to play a role in cell proliferation [].; PDB: 1X5M_A 2JTT_D.
Probab=99.72 E-value=1.2e-18 Score=126.35 Aligned_cols=56 Identities=41% Similarity=0.754 Sum_probs=31.7
Q ss_pred CcccccccCCccCCCCCCCCCCchhHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC
Q 028262 147 NWLDLQYKEDKLKPNLDKERDPMAGIMDLMKNMYEEGDDEMKRTIAKAWTDARSGKTA 204 (211)
Q Consensus 147 ~W~~L~~~e~k~kp~~d~~~dp~~~l~~l~k~iY~~gDde~kRam~Ks~~ES~~k~~~ 204 (211)
+|.+|+.... .+.-+++.+|+++||+|||+||++|||||||||+|||+||+|..++
T Consensus 3 ~W~~l~~~~~--~~~~~d~~d~~a~lm~lfkkiY~~gDDe~KRam~KSf~ES~GT~LS 58 (82)
T PF05002_consen 3 NWDKLTKKKE--KEEEDDEEDPEASLMNLFKKIYDNGDDEMKRAMMKSFTESQGTVLS 58 (82)
T ss_dssp --SSSBHH----------------SHHHHHHHHHTTS-SCHHHHHHHHHHCT------
T ss_pred ChHHcccccc--ccccccccCchHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCcccc
Confidence 7999985421 2222445789999999999999999999999999999999999875
No 14
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=99.72 E-value=4.3e-17 Score=115.86 Aligned_cols=83 Identities=31% Similarity=0.446 Sum_probs=77.3
Q ss_pred EeecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeCCCceeEEecCCcCCCccCCCceEEEeCCeEEEEEeecCC-CC
Q 028262 69 WDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKASK-GN 147 (211)
Q Consensus 69 W~Qt~~~V~I~I~lk~v~~e~v~V~f~~~sl~v~i~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI~L~K~~~-~~ 147 (211)
|+|+.+.|+|+|+++++.++++.|.|++++|+|.+.+.++..|.+.+ .||++|+|++|+|++.+++|+|+|.|+.+ ++
T Consensus 1 W~Q~~~~v~i~v~~~~~~~~~~~v~~~~~~l~i~~~~~~~~~~~~~~-~L~~~I~~~~s~~~~~~~~l~i~L~K~~~~~~ 79 (84)
T cd06463 1 WYQTLDEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGGGGKEYLLEG-ELFGPIDPEESKWTVEDRKIEITLKKKEPGEW 79 (84)
T ss_pred CcccccEEEEEEEcCCCCccceEEEEecCEEEEEeeCCCCCceEEee-EccCccchhhcEEEEeCCEEEEEEEECCCCCC
Confidence 99999999999999999899999999999999999765567899987 79999999999999999999999999998 69
Q ss_pred ccccc
Q 028262 148 WLDLQ 152 (211)
Q Consensus 148 W~~L~ 152 (211)
|++|.
T Consensus 80 W~~l~ 84 (84)
T cd06463 80 WPRLE 84 (84)
T ss_pred CcccC
Confidence 99984
No 15
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=99.71 E-value=5.7e-17 Score=117.28 Aligned_cols=82 Identities=20% Similarity=0.299 Sum_probs=72.9
Q ss_pred eeEeecCCEEEEEEEeC-CCCCCCcEEEEEeeEEEEEEEeCCCceeEEecCCcCCCccCCCceEEEeC-CeEEEEEeecC
Q 028262 67 FSWDQDNEKVKIYISLE-GVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKP-TRVVIMLFKAS 144 (211)
Q Consensus 67 y~W~Qt~~~V~I~I~lk-~v~~e~v~V~f~~~sl~v~i~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~-~kIeI~L~K~~ 144 (211)
|.|+|+.+.|+|+|.++ ++.++++.|+|++++|+|.+.+ ..+.+ .+.||++|+|++|+|++.+ ++|+|+|.|++
T Consensus 1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~~---~~~~l-~~~L~~~I~~~~s~w~~~~~~~v~i~L~K~~ 76 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVKG---GEPLL-DGELYAKVKVDESTWTLEDGKLLEITLEKRN 76 (85)
T ss_pred CEEEeeCCEEEEEEECCCCCcceeEEEEEEcCEEEEEECC---CCceE-cCcccCceeEcCCEEEEeCCCEEEEEEEECC
Confidence 89999999999999997 6788999999999999999853 23444 4699999999999999999 99999999999
Q ss_pred C-CCccccc
Q 028262 145 K-GNWLDLQ 152 (211)
Q Consensus 145 ~-~~W~~L~ 152 (211)
+ .+|++|.
T Consensus 77 ~~~~W~~L~ 85 (85)
T cd06467 77 EGEWWPSLV 85 (85)
T ss_pred CCccccccC
Confidence 8 5999984
No 16
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.71 E-value=5.9e-17 Score=115.43 Aligned_cols=78 Identities=32% Similarity=0.470 Sum_probs=72.5
Q ss_pred EeecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeCCCceeEEecCCcCCCccCCCceEEEeCCeEEEEEeecCCCCc
Q 028262 69 WDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKASKGNW 148 (211)
Q Consensus 69 W~Qt~~~V~I~I~lk~v~~e~v~V~f~~~sl~v~i~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI~L~K~~~~~W 148 (211)
|+|+++.|+|+|.++|+.++++.|+++++.|.+.+ ..|.+.+ +||++|+|++|++++.+++|+|+|.|+++++|
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~~~l~i~~-----~~~~~~~-~l~~~I~~e~~~~~~~~~~l~i~L~K~~~~~W 74 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFCSDLYLKVNF-----PPYLFEL-DLAAPIDDEKSSAKIGNGVLVFTLVKKEPGIW 74 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEEecCEEEEcC-----CCEEEEE-eCcccccccccEEEEeCCEEEEEEEeCCCCcc
Confidence 99999999999999999999999999999887755 4688887 99999999999999999999999999988899
Q ss_pred cccc
Q 028262 149 LDLQ 152 (211)
Q Consensus 149 ~~L~ 152 (211)
++|+
T Consensus 75 ~~L~ 78 (78)
T cd06469 75 EALC 78 (78)
T ss_pred cccC
Confidence 9984
No 17
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=99.69 E-value=2.3e-16 Score=115.97 Aligned_cols=83 Identities=19% Similarity=0.282 Sum_probs=71.8
Q ss_pred eeEeecCCEEEEEEEeCC--CCCCCcEEEEEeeEEEEEEEeCCCceeEEecCCcCCCccCCCceEEEe--CCeEEEEEee
Q 028262 67 FSWDQDNEKVKIYISLEG--VVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVK--PTRVVIMLFK 142 (211)
Q Consensus 67 y~W~Qt~~~V~I~I~lk~--v~~e~v~V~f~~~sl~v~i~~~~gk~y~l~i~~L~~~I~pe~S~~kv~--~~kIeI~L~K 142 (211)
|+||||++.|+|+|+.++ .+..++.+.+..++|++.+.-. +..|.+.+ +||++|+|+. ++++. ++||||+|+|
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~~~l~v~~~~~-~~~~~~~~-~L~~~I~~~~-~~~~~~~~~KVEI~L~K 77 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQRELRVEIILG-DKSYLLHL-DLSNEVQWPC-EVRISTETGKIELVLKK 77 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCCCEEEEEEECC-CceEEEee-eccccCCCCc-EEEEcccCceEEEEEEc
Confidence 799999999999999884 5677788888998999988543 77798887 9999998764 89998 5599999999
Q ss_pred cCCCCccccc
Q 028262 143 ASKGNWLDLQ 152 (211)
Q Consensus 143 ~~~~~W~~L~ 152 (211)
+++..|++|.
T Consensus 78 ~e~~~W~~Lg 87 (87)
T cd06490 78 KEPEKWTSLG 87 (87)
T ss_pred CCCCccccCc
Confidence 9999999983
No 18
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=99.65 E-value=1.3e-15 Score=113.37 Aligned_cols=84 Identities=15% Similarity=0.308 Sum_probs=73.9
Q ss_pred ccceeEeecCCEEEEEEEeC-CCCCCCcEEEEEeeEEEEEEEeCCCceeEEecCCcCCCccCCCceEEEeCCe-EEEEEe
Q 028262 64 LGSFSWDQDNEKVKIYISLE-GVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTR-VVIMLF 141 (211)
Q Consensus 64 i~~y~W~Qt~~~V~I~I~lk-~v~~e~v~V~f~~~sl~v~i~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~k-IeI~L~ 141 (211)
...|.|+||.+.|.|+|.++ ++.++++.|.|++++|.|.+. |.. +.-++||+.|+|++|+|.+.+++ |+|+|.
T Consensus 5 ~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~~---g~~--~l~G~L~~~I~~destWtled~k~l~I~L~ 79 (93)
T cd06494 5 TPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSRDISLAVK---GQE--VLKGKLFDSVVADECTWTLEDRKLIRIVLT 79 (93)
T ss_pred CCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEcCEEEEEEC---CEE--EEcCcccCccCcccCEEEEECCcEEEEEEE
Confidence 46899999999999999887 889999999999999999984 333 44589999999999999999998 699999
Q ss_pred ecCCC---Cccccc
Q 028262 142 KASKG---NWLDLQ 152 (211)
Q Consensus 142 K~~~~---~W~~L~ 152 (211)
|.+.+ +|++|.
T Consensus 80 K~~~~~~~~W~sl~ 93 (93)
T cd06494 80 KSNRDAGNCWKSLL 93 (93)
T ss_pred eCCCCCCccccccC
Confidence 99644 999873
No 19
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=99.64 E-value=2.5e-15 Score=113.73 Aligned_cols=92 Identities=21% Similarity=0.359 Sum_probs=78.0
Q ss_pred ccceeEeecCCEEEEEEEeC-CC-CCCCcEEEEEeeEEEEEEEeCCCceeEEecCCcCCCccCCCceEEEeCCe-EEEEE
Q 028262 64 LGSFSWDQDNEKVKIYISLE-GV-VQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTR-VVIML 140 (211)
Q Consensus 64 i~~y~W~Qt~~~V~I~I~lk-~v-~~e~v~V~f~~~sl~v~i~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~k-IeI~L 140 (211)
..+|.|.||.+.|.|+|.++ ++ ..+++.|+|+.++|.|.+.+.+|.. .+.-++||+.|++++|+|.+.+++ |+|+|
T Consensus 4 ~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~~l~v~~~~~~~~~-~~i~G~L~~~V~~des~Wtled~~~l~I~L 82 (102)
T cd06495 4 RENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSSSIRVSVRDGGGEK-VLMEGEFTHKINTENSLWSLEPGKCVLLSL 82 (102)
T ss_pred CCceEEEeECCeEEEEEECCCCCccceEEEEEEEcCEEEEEEecCCCCc-eEEeCcccCcccCccceEEEeCCCEEEEEE
Confidence 35899999999999999999 54 5789999999999999997533322 345689999999999999999864 89999
Q ss_pred eecCCCCcccccccCC
Q 028262 141 FKASKGNWLDLQYKED 156 (211)
Q Consensus 141 ~K~~~~~W~~L~~~e~ 156 (211)
.|....||++|...+.
T Consensus 83 ~K~~~~wW~~v~~g~~ 98 (102)
T cd06495 83 SKCSEVWWNAVLKGEE 98 (102)
T ss_pred EECCCcccchhhCCCC
Confidence 9998779999986553
No 20
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=99.64 E-value=1.1e-15 Score=124.25 Aligned_cols=129 Identities=22% Similarity=0.366 Sum_probs=101.2
Q ss_pred eccceeEeecCCEEEEEEEeC-CC-CCCCcEEEEEeeEEEEEEEeCCCceeEEecCCcCCCccCCCceEEEeCCe-EEEE
Q 028262 63 TLGSFSWDQDNEKVKIYISLE-GV-VQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTR-VVIM 139 (211)
Q Consensus 63 ~i~~y~W~Qt~~~V~I~I~lk-~v-~~e~v~V~f~~~sl~v~i~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~k-IeI~ 139 (211)
....|.|+||...|.|+|.++ |+ ...+|.|.+..++|.|.+.+ .+ .+.-++|+++|++++|+|+|.+++ |.+.
T Consensus 17 ~~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~~hI~V~~kg---~~-~ildG~L~~~vk~des~WtiEd~k~i~i~ 92 (179)
T KOG2265|consen 17 DEEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQSKHIKVGLKG---QP-PILDGELSHSVKVDESTWTIEDGKMIVIL 92 (179)
T ss_pred cccceeeeeehhheEEEeecCCCCcccceEEEEeeeeEEEEecCC---CC-ceecCccccccccccceEEecCCEEEEEE
Confidence 457899999999999999987 66 78899999999999999854 33 344589999999999999999996 5556
Q ss_pred EeecCC-CCcccccccCCccCCCCCCCCCC-chhHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCCCC
Q 028262 140 LFKASK-GNWLDLQYKEDKLKPNLDKERDP-MAGIMDLMKNMYEEGDDEMKRTIAKAWTDARSGKTADP 206 (211)
Q Consensus 140 L~K~~~-~~W~~L~~~e~k~kp~~d~~~dp-~~~l~~l~k~iY~~gDde~kRam~Ks~~ES~~k~~~~~ 206 (211)
|.|.+. .||.+|...+..+.| ..-+| ++.+ ++.|+++|.++.|++++.++|.++-|
T Consensus 93 l~K~~~~eWW~~ll~gep~ID~---~ki~~e~skl--------~dldeEtra~vekmmfdq~qk~~~~p 150 (179)
T KOG2265|consen 93 LKKSNKMEWWDSLLEGEPEIDT---KKIEPEESKL--------SDLDEETRATVEKMMFDQRQKSMGLP 150 (179)
T ss_pred eeccchHHHHHHHHcCCCCCCc---cccChhhhhh--------hhccHHHHHhhhccchhHHHhhcCCC
Confidence 666553 499999977743332 12345 3333 57899999999999999999876643
No 21
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=99.59 E-value=1.1e-14 Score=107.02 Aligned_cols=82 Identities=20% Similarity=0.321 Sum_probs=71.4
Q ss_pred eeEeecCCEEEEEEEeC-C--CCCCCcEEEEEeeEEEEEEEeCCCceeEEecCCcCCCccCCCceEEEeCC-eEEEEEee
Q 028262 67 FSWDQDNEKVKIYISLE-G--VVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPT-RVVIMLFK 142 (211)
Q Consensus 67 y~W~Qt~~~V~I~I~lk-~--v~~e~v~V~f~~~sl~v~i~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~-kIeI~L~K 142 (211)
|.|.||.+.|.|+|.++ + +.++++.|+++.++|+|.+. |..+.+ -++||++|+|++|+|.+.++ .|+|+|.|
T Consensus 1 Y~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~---g~~~~i-~G~L~~~V~~des~Wtled~~~l~i~L~K 76 (87)
T cd06492 1 YRWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLK---GQPPII-DGELYNEVKVEESSWLIEDGKVVTVNLEK 76 (87)
T ss_pred CccEeecCEEEEEEECCCCCCccceEEEEEEecCEEEEEEC---CCceEE-eCcccCcccccccEEEEeCCCEEEEEEEE
Confidence 89999999999999996 3 68899999999999999885 334444 57999999999999999885 69999999
Q ss_pred cCCC-Cccccc
Q 028262 143 ASKG-NWLDLQ 152 (211)
Q Consensus 143 ~~~~-~W~~L~ 152 (211)
..++ +|++|.
T Consensus 77 ~~~~~wW~~l~ 87 (87)
T cd06492 77 INKMEWWSRLV 87 (87)
T ss_pred CCCCccccccC
Confidence 9765 999984
No 22
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.6e-14 Score=117.45 Aligned_cols=89 Identities=18% Similarity=0.284 Sum_probs=78.1
Q ss_pred ccceeEeecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEe-CCCceeEEecCCcCCCccCCCceEEEeCCeEEEEEee
Q 028262 64 LGSFSWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHD-VQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFK 142 (211)
Q Consensus 64 i~~y~W~Qt~~~V~I~I~lk~v~~e~v~V~f~~~sl~v~i~~-~~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI~L~K 142 (211)
.+-..|+|+.+.|+++|.+.+ ..++.|++++..|.|+..+ .++..|.+.| +||++|+|++|++++.++.|.+.|+|
T Consensus 7 ~p~v~Waqr~~~vyltv~Ved--~~d~~v~~e~~~l~fs~k~~~d~~~~~~~i-ef~~eIdpe~sk~k~~~r~if~i~~K 83 (180)
T KOG3158|consen 7 PPEVKWAQRRDLVYLTVCVED--AKDVHVNLEPSKLTFSCKSGADNHKYENEI-EFFDEIDPEKSKHKRTSRSIFCILRK 83 (180)
T ss_pred CCcchhhhhcCeEEEEEEecc--CccceeeccccEEEEEeccCCCceeeEEee-ehhhhcCHhhccccccceEEEEEEEc
Confidence 356889999999999999995 4788999999999999876 5667787777 99999999999999999899999999
Q ss_pred cCC-CCcccccccC
Q 028262 143 ASK-GNWLDLQYKE 155 (211)
Q Consensus 143 ~~~-~~W~~L~~~e 155 (211)
++. .+||+|++..
T Consensus 84 ~e~~~~WprLtkeK 97 (180)
T KOG3158|consen 84 KELGEYWPRLTKEK 97 (180)
T ss_pred cccccccchhhhcc
Confidence 987 5999999543
No 23
>PF09032 Siah-Interact_N: Siah interacting protein, N terminal ; InterPro: IPR015120 The N-terminal domain of Siah interacting protein (SIP) adopts a helical hairpin structure with a hydrophobic core stabilised by a classic knobs-and-holes arrangement of side chains contributed by the two amphipathic helices. Little is known about this domain's function, except that it is crucial for interactions with Siah. It has also been hypothesised that SIP can dimerise through this N-terminal domain []. ; PDB: 1YSM_A 2A26_C 2A25_B 1X5M_A.
Probab=99.50 E-value=1.3e-14 Score=104.55 Aligned_cols=40 Identities=48% Similarity=0.627 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhhhhc
Q 028262 2 AEDLVLDLEELRQLRSIAKRPRIVSLINSEIHTLEKLSKE 41 (211)
Q Consensus 2 ~~~l~~dl~E~~~ll~~a~r~~v~~~l~~~~~~~e~~~~~ 41 (211)
++||++||+||++||++|+|+||+++|+.||++||++|+.
T Consensus 5 i~eL~~Dl~El~~Ll~~a~R~rVk~~L~~ei~klE~eI~~ 44 (79)
T PF09032_consen 5 IEELQLDLEELKSLLEQAKRKRVKDLLTNEIRKLETEIKK 44 (79)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999999987
No 24
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=99.33 E-value=3.9e-12 Score=109.09 Aligned_cols=93 Identities=23% Similarity=0.340 Sum_probs=82.7
Q ss_pred eeccceeEeecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEe-CCCceeEEecCCcCCCccCCCceEEEeCCeEEEEE
Q 028262 62 ITLGSFSWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHD-VQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIML 140 (211)
Q Consensus 62 ~~i~~y~W~Qt~~~V~I~I~lk~v~~e~v~V~f~~~sl~v~i~~-~~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI~L 140 (211)
+.-.||+|.||+.+|+|.||.++..++.-.|+.....|.|.+.. .++..|.+.+ +|++.|++++|++.+..++|||+|
T Consensus 212 V~~cR~Dwhqt~~~Vti~VY~k~~lpe~s~iean~~~l~V~ivf~~gna~fd~d~-kLwgvvnve~s~v~m~~tkVEIsl 290 (320)
T KOG1667|consen 212 VVKCRHDWHQTNGFVTINVYAKGALPETSNIEANGTTLHVSIVFGFGNASFDLDY-KLWGVVNVEESSVVMGETKVEISL 290 (320)
T ss_pred cccchhhhhhcCCeEEEEEEeccCCcccceeeeCCeEEEEEEEecCCCceeeccc-eeeeeechhhceEEeecceEEEEE
Confidence 34579999999999999999998877777888888888888754 5678888887 999999999999999999999999
Q ss_pred eecCCCCcccccccC
Q 028262 141 FKASKGNWLDLQYKE 155 (211)
Q Consensus 141 ~K~~~~~W~~L~~~e 155 (211)
+|++++.|++|....
T Consensus 291 ~k~ep~sWa~Le~p~ 305 (320)
T KOG1667|consen 291 KKAEPGSWARLEFPP 305 (320)
T ss_pred eccCCCCcccccCCH
Confidence 999999999999754
No 25
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.19 E-value=8.7e-11 Score=81.19 Aligned_cols=73 Identities=22% Similarity=0.345 Sum_probs=67.0
Q ss_pred EeecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeC-------CCceeEEecCCcCCCccCCCceEEEeCCeEEEEEe
Q 028262 69 WDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDV-------QGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLF 141 (211)
Q Consensus 69 W~Qt~~~V~I~I~lk~v~~e~v~V~f~~~sl~v~i~~~-------~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI~L~ 141 (211)
|+|+.+.|.|+|.++|+.++++.|.|+++.|.|.+... .+.+|.+.+ .|+++|+|+.|++++.++.|+|.|.
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~-~L~~~i~~~~~~~~~~~~~l~i~l~ 79 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSF-ELPEDVDPEKSKASLENGVLEITLP 79 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcCCCcceEeeeeEEEEE-ECCCCcCHHHCEEEEECCEEEEEEc
Confidence 99999999999999999999999999999999998643 246888888 7999999999999999999999998
Q ss_pred e
Q 028262 142 K 142 (211)
Q Consensus 142 K 142 (211)
|
T Consensus 80 K 80 (80)
T cd00298 80 K 80 (80)
T ss_pred C
Confidence 6
No 26
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=3.8e-05 Score=61.25 Aligned_cols=83 Identities=18% Similarity=0.221 Sum_probs=71.8
Q ss_pred eeccceeEeecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeCC---------------CceeEEecCCcCCCccCCC
Q 028262 62 ITLGSFSWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQ---------------GKNYRFTSPRLNQEIVPEK 126 (211)
Q Consensus 62 ~~i~~y~W~Qt~~~V~I~I~lk~v~~e~v~V~f~~~sl~v~i~~~~---------------gk~y~l~i~~L~~~I~pe~ 126 (211)
...+.|+++++++.+.|++.++|+.+++|.|.++++.|+|+..-.. ...|.-.+ .|...|+|+.
T Consensus 38 ~~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~-~Lp~~v~~~~ 116 (146)
T COG0071 38 TGTPPVDIEETDDEYRITAELPGVDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTF-RLPEKVDPEV 116 (146)
T ss_pred CCCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEE-ECcccccccc
Confidence 3467899999999999999999999999999999999999985432 14566666 9999999998
Q ss_pred ceEEEeCCeEEEEEeecCC
Q 028262 127 SKVLVKPTRVVIMLFKASK 145 (211)
Q Consensus 127 S~~kv~~~kIeI~L~K~~~ 145 (211)
.+-+...+-+.|.|.|..+
T Consensus 117 ~~A~~~nGvL~I~lpk~~~ 135 (146)
T COG0071 117 IKAKYKNGLLTVTLPKAEP 135 (146)
T ss_pred eeeEeeCcEEEEEEecccc
Confidence 8889999999999999765
No 27
>KOG4379 consensus Uncharacterized conserved protein (tumor antigen CML66 in humans) [Function unknown]
Probab=98.02 E-value=1e-05 Score=74.89 Aligned_cols=88 Identities=19% Similarity=0.248 Sum_probs=75.5
Q ss_pred eccceeEeecCCEEEEEEEeCC-CCCCCcEEEEEeeEEEEEEEeCCCceeEEecCCcCCCccCCCceEEEeC-CeEEEEE
Q 028262 63 TLGSFSWDQDNEKVKIYISLEG-VVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKP-TRVVIML 140 (211)
Q Consensus 63 ~i~~y~W~Qt~~~V~I~I~lk~-v~~e~v~V~f~~~sl~v~i~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~-~kIeI~L 140 (211)
.-+.|.|.|+.+.+.|++.++. +..+++.|.+..+.+-+.+.+ +.+.-+.||..|..+.|.|.+.. +++++.|
T Consensus 288 ~~p~y~w~qt~d~~~~~~~~p~~~~~~~i~Iq~~~~~v~v~~~d-----h~~~~g~lyasv~he~s~~ii~ean~Le~sl 362 (596)
T KOG4379|consen 288 GPPSYSWSQTDDNVLIRFNVPSTASAKEINIQGSKTTVVVKHLD-----HVIFDGELYASVGHELSAFIIAEANGLELSL 362 (596)
T ss_pred CCccceeeeccCcceEEEecccccccceEEEEecCceEEEEeee-----eEEeccchhhhccccchhhhhhhhccceEEE
Confidence 3478999999999999999984 478899999999988887743 55666899999999999999986 7999999
Q ss_pred eecCCC-CcccccccC
Q 028262 141 FKASKG-NWLDLQYKE 155 (211)
Q Consensus 141 ~K~~~~-~W~~L~~~e 155 (211)
.|++++ .|++|..++
T Consensus 363 ~K~de~~twprL~~~d 378 (596)
T KOG4379|consen 363 TKADEIQTWPRLFAQD 378 (596)
T ss_pred eecccccccchheeec
Confidence 999776 999998644
No 28
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=97.94 E-value=7.1e-05 Score=54.93 Aligned_cols=76 Identities=13% Similarity=0.239 Sum_probs=62.6
Q ss_pred ceeEeecCCEEEEEEEeCCCCCCCcEEEEEee-EEEEEEEeC-----CC----------ceeEEecCCcCCCccCCCceE
Q 028262 66 SFSWDQDNEKVKIYISLEGVVQDKMEAEFKQW-SFDVKFHDV-----QG----------KNYRFTSPRLNQEIVPEKSKV 129 (211)
Q Consensus 66 ~y~W~Qt~~~V~I~I~lk~v~~e~v~V~f~~~-sl~v~i~~~-----~g----------k~y~l~i~~L~~~I~pe~S~~ 129 (211)
+++|+++++.+.|++.++|+.++++.|.+..+ .|.|+.... .+ ..|.-.+ .|-..|+++.-+.
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i-~LP~~v~~~~i~A 79 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRF-RLPENADADEVKA 79 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEE-ECCCCCCHHHCEE
Confidence 47899999999999999999999999999875 788877421 11 2455555 8889999998899
Q ss_pred EEeCCeEEEEEee
Q 028262 130 LVKPTRVVIMLFK 142 (211)
Q Consensus 130 kv~~~kIeI~L~K 142 (211)
+..++-+.|+|.|
T Consensus 80 ~~~nGvL~I~lPK 92 (92)
T cd06472 80 FLENGVLTVTVPK 92 (92)
T ss_pred EEECCEEEEEecC
Confidence 9999999999875
No 29
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=97.66 E-value=0.00031 Score=49.87 Aligned_cols=74 Identities=15% Similarity=0.206 Sum_probs=62.8
Q ss_pred eEeecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeCC--------------CceeEEecCCcCCCccCCCceEEEeC
Q 028262 68 SWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQ--------------GKNYRFTSPRLNQEIVPEKSKVLVKP 133 (211)
Q Consensus 68 ~W~Qt~~~V~I~I~lk~v~~e~v~V~f~~~sl~v~i~~~~--------------gk~y~l~i~~L~~~I~pe~S~~kv~~ 133 (211)
+++++++.+.|.+.++|+.++++.|.+.++.|.|...... ...|.-.+ .|-..|+++..+....+
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~-~LP~~vd~~~i~a~~~~ 79 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSF-RLPEDVDPDKIKASLEN 79 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEE-ECCCCcCHHHcEEEEeC
Confidence 3678889999999999999999999999999999863211 34577777 79999999999999999
Q ss_pred CeEEEEEee
Q 028262 134 TRVVIMLFK 142 (211)
Q Consensus 134 ~kIeI~L~K 142 (211)
+.++|++.|
T Consensus 80 G~L~I~~pk 88 (88)
T cd06464 80 GVLTITLPK 88 (88)
T ss_pred CEEEEEEcC
Confidence 999998865
No 30
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=97.66 E-value=0.00051 Score=50.80 Aligned_cols=77 Identities=14% Similarity=0.240 Sum_probs=60.3
Q ss_pred eEeecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeC----CC---------ceeEEecCCcCCCccCCCceEEEeCC
Q 028262 68 SWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDV----QG---------KNYRFTSPRLNQEIVPEKSKVLVKPT 134 (211)
Q Consensus 68 ~W~Qt~~~V~I~I~lk~v~~e~v~V~f~~~sl~v~i~~~----~g---------k~y~l~i~~L~~~I~pe~S~~kv~~~ 134 (211)
+|.++++.+.|.+.++|+.++++.|.+..+.|.|..... ++ ..|.-.+ .|-..++++.-+.++..+
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~-~lP~~vd~~~i~a~~~~G 79 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSI-RLPEDVDPDKIKASYENG 79 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEE-E-STTB-GGG-EEEETTS
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEEE-cCCCcCCcceEEEEecCC
Confidence 689999999999999999999999999999998887432 11 2455555 888899999989999999
Q ss_pred eEEEEEeecCC
Q 028262 135 RVVIMLFKASK 145 (211)
Q Consensus 135 kIeI~L~K~~~ 145 (211)
.+.|++.|...
T Consensus 80 vL~I~~pk~~~ 90 (102)
T PF00011_consen 80 VLTITIPKKEE 90 (102)
T ss_dssp EEEEEEEBSSS
T ss_pred EEEEEEEcccc
Confidence 99999999764
No 31
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=97.58 E-value=0.00053 Score=50.20 Aligned_cols=75 Identities=13% Similarity=0.186 Sum_probs=60.0
Q ss_pred ceeEeecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeCC--------C---------ceeEEecCCcCCCccCCCce
Q 028262 66 SFSWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQ--------G---------KNYRFTSPRLNQEIVPEKSK 128 (211)
Q Consensus 66 ~y~W~Qt~~~V~I~I~lk~v~~e~v~V~f~~~sl~v~i~~~~--------g---------k~y~l~i~~L~~~I~pe~S~ 128 (211)
+.+++++++.+.|.+.++|+.++++.|.+..+.|.|...... + ..|.-.+ .|- .|+++..+
T Consensus 2 ~~di~e~~~~~~i~~~lPGv~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~-~lp-~v~~~~i~ 79 (93)
T cd06471 2 KTDIKETDDEYIVEADLPGFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSF-YLP-NVDEEEIK 79 (93)
T ss_pred ceeEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEE-ECC-CCCHHHCE
Confidence 578999999999999999999999999999999999774311 0 1233334 553 78888889
Q ss_pred EEEeCCeEEEEEee
Q 028262 129 VLVKPTRVVIMLFK 142 (211)
Q Consensus 129 ~kv~~~kIeI~L~K 142 (211)
.+..++.+.|+|.|
T Consensus 80 A~~~dGvL~I~lPK 93 (93)
T cd06471 80 AKYENGVLKITLPK 93 (93)
T ss_pred EEEECCEEEEEEcC
Confidence 99999999999876
No 32
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=96.83 E-value=0.0095 Score=43.42 Aligned_cols=72 Identities=7% Similarity=0.099 Sum_probs=58.8
Q ss_pred eEeecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeCC----C----ceeEEecCCcCCCccCCCceEEEe-CCeEEE
Q 028262 68 SWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQ----G----KNYRFTSPRLNQEIVPEKSKVLVK-PTRVVI 138 (211)
Q Consensus 68 ~W~Qt~~~V~I~I~lk~v~~e~v~V~f~~~sl~v~i~~~~----g----k~y~l~i~~L~~~I~pe~S~~kv~-~~kIeI 138 (211)
+++.+++.+.|.+.++|+.++++.|.+.++.|.|+..... + ..|.-.+ .|-..|++++-+-... ++-+.|
T Consensus 4 ~i~e~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~f~R~f-~LP~~vd~~~v~A~~~~dGvL~I 82 (86)
T cd06475 4 EIRQTADRWKVSLDVNHFAPEELVVKTKDGVVEITGKHEEKQDEHGFVSRCFTRKY-TLPPGVDPTAVTSSLSPDGILTV 82 (86)
T ss_pred eEEEcCCeEEEEEECCCCCHHHEEEEEECCEEEEEEEECcCcCCCCEEEEEEEEEE-ECCCCCCHHHcEEEECCCCeEEE
Confidence 5789999999999999999999999999999999884311 1 2355555 8889999999899997 787777
Q ss_pred EE
Q 028262 139 ML 140 (211)
Q Consensus 139 ~L 140 (211)
+|
T Consensus 83 ~l 84 (86)
T cd06475 83 EA 84 (86)
T ss_pred Ee
Confidence 76
No 33
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=96.81 E-value=0.0067 Score=43.54 Aligned_cols=68 Identities=12% Similarity=0.209 Sum_probs=55.9
Q ss_pred CEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeCCC--------ceeEEecCCcCCCccCCCceEEEeC-CeEEEEEee
Q 028262 74 EKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQG--------KNYRFTSPRLNQEIVPEKSKVLVKP-TRVVIMLFK 142 (211)
Q Consensus 74 ~~V~I~I~lk~v~~e~v~V~f~~~sl~v~i~~~~g--------k~y~l~i~~L~~~I~pe~S~~kv~~-~kIeI~L~K 142 (211)
+.+.|.+.++|+.++++.|.+..+.|.|....... ..|.-.+ .|-..|+++.-+.++.. +.+.|.+.|
T Consensus 7 ~~~~v~~dlpG~~~edI~v~v~~~~L~I~g~~~~~~~~~~~~~~~f~r~~-~LP~~vd~~~i~A~~~~~GvL~I~~Pk 83 (83)
T cd06526 7 EKFQVTLDVKGFKPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRY-QLPEGVDPDSVTSSLSSDGVLTIEAPK 83 (83)
T ss_pred eeEEEEEECCCCCHHHcEEEEECCEEEEEEEEeeeccCCCEEEEEEEEEE-ECCCCCChHHeEEEeCCCcEEEEEecC
Confidence 57889999999999999999999999998843211 2455666 89999999988899988 889998865
No 34
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=96.77 E-value=0.0093 Score=43.48 Aligned_cols=72 Identities=10% Similarity=0.146 Sum_probs=58.3
Q ss_pred eecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeC---CC-----ceeEEecCCcCCCccCCCceEEE-eCCeEEEEE
Q 028262 70 DQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDV---QG-----KNYRFTSPRLNQEIVPEKSKVLV-KPTRVVIML 140 (211)
Q Consensus 70 ~Qt~~~V~I~I~lk~v~~e~v~V~f~~~sl~v~i~~~---~g-----k~y~l~i~~L~~~I~pe~S~~kv-~~~kIeI~L 140 (211)
..+++.+.|.+.++|+.++++.|++..+.|.|+.... .+ .+|.-.+ .|-..|+++.-+-++ .++.+.|++
T Consensus 6 ~e~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~-~LP~~Vd~~~i~A~~~~dGvL~I~~ 84 (86)
T cd06497 6 RSDRDKFTIYLDVKHFSPEDLTVKVLDDYVEIHGKHSERQDDHGYISREFHRRY-RLPSNVDQSAITCSLSADGMLTFSG 84 (86)
T ss_pred EEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEE-ECCCCCChHHeEEEeCCCCEEEEEe
Confidence 5678899999999999999999999999999987421 11 1244455 888999999999998 688999988
Q ss_pred ee
Q 028262 141 FK 142 (211)
Q Consensus 141 ~K 142 (211)
.|
T Consensus 85 PK 86 (86)
T cd06497 85 PK 86 (86)
T ss_pred cC
Confidence 65
No 35
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=96.76 E-value=0.0091 Score=43.22 Aligned_cols=72 Identities=7% Similarity=0.175 Sum_probs=58.4
Q ss_pred eecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEe--CCC---ceeEEecCCcCCCccCCCceEEE-eCCeEEEEEee
Q 028262 70 DQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHD--VQG---KNYRFTSPRLNQEIVPEKSKVLV-KPTRVVIMLFK 142 (211)
Q Consensus 70 ~Qt~~~V~I~I~lk~v~~e~v~V~f~~~sl~v~i~~--~~g---k~y~l~i~~L~~~I~pe~S~~kv-~~~kIeI~L~K 142 (211)
..+++.+.|.+.++|+.++++.|++..+.|+|+..- ..| ..|.-.+ .|-..|+++.-+-++ ..+.+.|++.+
T Consensus 4 ~e~~~~~~v~~dlpG~~pedi~V~v~~~~L~I~ger~~~~~~~~g~F~R~~-~LP~~vd~e~v~A~l~~~GvL~I~~~~ 81 (81)
T cd06479 4 KTLGDTYQFAVDVSDFSPEDIIVTTSNNQIEVHAEKLASDGTVMNTFTHKC-QLPEDVDPTSVSSSLGEDGTLTIKARR 81 (81)
T ss_pred cCcCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEeccCCCEEEEEEEEE-ECCCCcCHHHeEEEecCCCEEEEEecC
Confidence 457788999999999999999999999999998732 122 2455556 899999999988887 78889988753
No 36
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=96.66 E-value=0.011 Score=42.88 Aligned_cols=72 Identities=4% Similarity=0.103 Sum_probs=58.0
Q ss_pred ecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeC---CCc-----eeEEecCCcCCCccCCCceEEEe-CCeEEEEEe
Q 028262 71 QDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDV---QGK-----NYRFTSPRLNQEIVPEKSKVLVK-PTRVVIMLF 141 (211)
Q Consensus 71 Qt~~~V~I~I~lk~v~~e~v~V~f~~~sl~v~i~~~---~gk-----~y~l~i~~L~~~I~pe~S~~kv~-~~kIeI~L~ 141 (211)
-+++.+.|.+.++|+.++++.|.+..+.|.|..... .+. .|.-.+ .|-..|+++.-+-+.. ++.+.|+|.
T Consensus 4 ~~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~-~LP~~vd~~~i~A~~~~dGvL~I~lP 82 (84)
T cd06498 4 LEKDKFSVNLDVKHFSPEELKVKVLGDFIEIHGKHEERQDEHGFISREFQRKY-RIPADVDPLTITSSLSPDGVLTVCGP 82 (84)
T ss_pred eCCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEE-ECCCCCChHHcEEEeCCCCEEEEEEe
Confidence 357788999999999999999999999999988421 111 244445 8889999999999996 889999987
Q ss_pred ec
Q 028262 142 KA 143 (211)
Q Consensus 142 K~ 143 (211)
|+
T Consensus 83 k~ 84 (84)
T cd06498 83 RK 84 (84)
T ss_pred CC
Confidence 74
No 37
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=96.52 E-value=0.03 Score=40.90 Aligned_cols=73 Identities=12% Similarity=0.245 Sum_probs=54.8
Q ss_pred eeEeec-CCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeC----CC----------ceeEEecCCcCCCccCCCceEEE
Q 028262 67 FSWDQD-NEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDV----QG----------KNYRFTSPRLNQEIVPEKSKVLV 131 (211)
Q Consensus 67 y~W~Qt-~~~V~I~I~lk~v~~e~v~V~f~~~sl~v~i~~~----~g----------k~y~l~i~~L~~~I~pe~S~~kv 131 (211)
++=.++ ++...|.+.++|+.++++.|.+..+.|.|..... .+ ..|.-.+ .|-..|+++ +...
T Consensus 3 ~di~e~~~~~~~v~~~lPG~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~-~LP~~vd~~--~A~~ 79 (90)
T cd06470 3 YNIEKTGENNYRITLAVAGFSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSF-NLADHVKVK--GAEL 79 (90)
T ss_pred eeeEEcCCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEE-ECCCCceEC--eeEE
Confidence 444565 4899999999999999999999999999986321 01 2355445 777788875 6778
Q ss_pred eCCeEEEEEee
Q 028262 132 KPTRVVIMLFK 142 (211)
Q Consensus 132 ~~~kIeI~L~K 142 (211)
.++.+.|+|.+
T Consensus 80 ~~GvL~I~l~~ 90 (90)
T cd06470 80 ENGLLTIDLER 90 (90)
T ss_pred eCCEEEEEEEC
Confidence 88989888853
No 38
>PRK10743 heat shock protein IbpA; Provisional
Probab=96.47 E-value=0.031 Score=44.33 Aligned_cols=76 Identities=16% Similarity=0.189 Sum_probs=61.4
Q ss_pred cceeEee-cCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeC---CCc----------eeEEecCCcCCCccCCCceEE
Q 028262 65 GSFSWDQ-DNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDV---QGK----------NYRFTSPRLNQEIVPEKSKVL 130 (211)
Q Consensus 65 ~~y~W~Q-t~~~V~I~I~lk~v~~e~v~V~f~~~sl~v~i~~~---~gk----------~y~l~i~~L~~~I~pe~S~~k 130 (211)
+.++-++ +++.+.|.+.++|+.+++|.|.+..+.|+|+.... .+. .|.-.+ .|-..|++++ -+
T Consensus 35 p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~-~LP~~Vd~~~--A~ 111 (137)
T PRK10743 35 PPYNVELVDENHYRIAIAVAGFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKF-QLAENIHVRG--AN 111 (137)
T ss_pred CcEEEEEcCCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEECccccCCcEEEEEEECCEEEEEE-ECCCCcccCc--CE
Confidence 6688884 89999999999999999999999999999987421 111 244445 7888999983 77
Q ss_pred EeCCeEEEEEeec
Q 028262 131 VKPTRVVIMLFKA 143 (211)
Q Consensus 131 v~~~kIeI~L~K~ 143 (211)
..++-+.|+|-|.
T Consensus 112 ~~dGVL~I~lPK~ 124 (137)
T PRK10743 112 LVNGLLYIDLERV 124 (137)
T ss_pred EeCCEEEEEEeCC
Confidence 8899999999996
No 39
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=96.44 E-value=0.018 Score=41.63 Aligned_cols=71 Identities=7% Similarity=0.108 Sum_probs=56.2
Q ss_pred ecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeC---CC-----ceeEEecCCcCCCccCCCceEEE-eCCeEEEEEe
Q 028262 71 QDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDV---QG-----KNYRFTSPRLNQEIVPEKSKVLV-KPTRVVIMLF 141 (211)
Q Consensus 71 Qt~~~V~I~I~lk~v~~e~v~V~f~~~sl~v~i~~~---~g-----k~y~l~i~~L~~~I~pe~S~~kv-~~~kIeI~L~ 141 (211)
.+++.+.|.+.++|+.++++.|.+..+.|.|+.... .+ ..|.-.+ .|-..|+++.-+-.. .++.+.|++-
T Consensus 4 ~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~-~LP~~vd~~~i~A~~~~dGvL~I~~P 82 (83)
T cd06478 4 LDKDRFSVNLDVKHFSPEELSVKVLGDFVEIHGKHEERQDEHGFISREFHRRY-RLPPGVDPAAITSSLSADGVLTISGP 82 (83)
T ss_pred ecCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEceEcCCCCEEEEEEEEEE-ECCCCcChHHeEEEECCCCEEEEEec
Confidence 467789999999999999999999999999987421 11 2244555 888899999888888 4788888876
Q ss_pred e
Q 028262 142 K 142 (211)
Q Consensus 142 K 142 (211)
|
T Consensus 83 K 83 (83)
T cd06478 83 R 83 (83)
T ss_pred C
Confidence 5
No 40
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=95.89 E-value=0.056 Score=39.15 Aligned_cols=70 Identities=10% Similarity=0.174 Sum_probs=55.0
Q ss_pred cCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeC---CC-----ceeEEecCCcCCCccCCCceEEEe-CCeEEEEEee
Q 028262 72 DNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDV---QG-----KNYRFTSPRLNQEIVPEKSKVLVK-PTRVVIMLFK 142 (211)
Q Consensus 72 t~~~V~I~I~lk~v~~e~v~V~f~~~sl~v~i~~~---~g-----k~y~l~i~~L~~~I~pe~S~~kv~-~~kIeI~L~K 142 (211)
.++...|.+.++|+.++++.|++..+.|.|+.... .+ ..|.-.+ .|-..|+++.-+-+.. ++.+.|.|-|
T Consensus 5 ~~d~y~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~-~LP~~vd~~~v~A~~~~dGvL~I~~Pr 83 (83)
T cd06476 5 EDDKYQVFLDVCHFTPDEITVRTVDNLLEVSARHPQRMDRHGFVSREFTRTY-ILPMDVDPLLVRASLSHDGILCIQAPR 83 (83)
T ss_pred cCCeEEEEEEcCCCCHHHeEEEEECCEEEEEEEEcceecCCCEEEEEEEEEE-ECCCCCChhhEEEEecCCCEEEEEecC
Confidence 45678899999999999999999999999987421 12 2244445 7888999999999996 8888888754
No 41
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=95.88 E-value=0.082 Score=42.26 Aligned_cols=76 Identities=13% Similarity=0.230 Sum_probs=59.5
Q ss_pred cceeEee-cCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeC---CCc----------eeEEecCCcCCCccCCCceEE
Q 028262 65 GSFSWDQ-DNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDV---QGK----------NYRFTSPRLNQEIVPEKSKVL 130 (211)
Q Consensus 65 ~~y~W~Q-t~~~V~I~I~lk~v~~e~v~V~f~~~sl~v~i~~~---~gk----------~y~l~i~~L~~~I~pe~S~~k 130 (211)
+.++=++ +++.+.|.+.++|+.+++|.|.+..+.|+|+.... .+. .|.-.+ .|-..|+++ .-+
T Consensus 33 P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f-~LP~~vd~~--~A~ 109 (142)
T PRK11597 33 PPYNIEKSDDNHYRITLALAGFRQEDLDIQLEGTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSF-TLAENMEVS--GAT 109 (142)
T ss_pred CcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEECCEEEEEEEEccccCCCcEEEEEEeCcEEEEEE-ECCCCcccC--cCE
Confidence 3466676 46789999999999999999999999999988421 122 244444 777889987 577
Q ss_pred EeCCeEEEEEeec
Q 028262 131 VKPTRVVIMLFKA 143 (211)
Q Consensus 131 v~~~kIeI~L~K~ 143 (211)
..++-+.|+|-|.
T Consensus 110 ~~nGVL~I~lPK~ 122 (142)
T PRK11597 110 FVNGLLHIDLIRN 122 (142)
T ss_pred EcCCEEEEEEecc
Confidence 8899999999986
No 42
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=95.51 E-value=0.076 Score=38.70 Aligned_cols=68 Identities=12% Similarity=0.217 Sum_probs=52.7
Q ss_pred cCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEe---C--C-C------ceeEEecCCcCCCccCCCceEEE-eCCeEEE
Q 028262 72 DNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHD---V--Q-G------KNYRFTSPRLNQEIVPEKSKVLV-KPTRVVI 138 (211)
Q Consensus 72 t~~~V~I~I~lk~v~~e~v~V~f~~~sl~v~i~~---~--~-g------k~y~l~i~~L~~~I~pe~S~~kv-~~~kIeI 138 (211)
..+.+.|.+.++|+.+++|.|.+..+.|.|...- . + + ..|.-.+ .|-..|+++.-+-.+ .++.+.|
T Consensus 5 ~~d~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~-~LP~~Vd~~~i~A~~~~dGvL~I 83 (87)
T cd06481 5 GKEGFSLKLDVRGFSPEDLSVRVDGRKLVVTGKREKKNEDEKGSFSYEYQEFVREA-QLPEHVDPEAVTCSLSPSGHLHI 83 (87)
T ss_pred ccceEEEEEECCCCChHHeEEEEECCEEEEEEEEeeecccCCCcEEEEeeEEEEEE-ECCCCcChHHeEEEeCCCceEEE
Confidence 4578899999999999999999999999998732 1 1 1 2344445 788899999888888 6777777
Q ss_pred EE
Q 028262 139 ML 140 (211)
Q Consensus 139 ~L 140 (211)
.+
T Consensus 84 ~~ 85 (87)
T cd06481 84 RA 85 (87)
T ss_pred Ec
Confidence 65
No 43
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=94.58 E-value=0.4 Score=42.38 Aligned_cols=65 Identities=15% Similarity=0.269 Sum_probs=55.3
Q ss_pred cCCEEEEEEEeCCC-CCCCcEEEEEeeEEEEEEEeCCCceeEEecCCcCCCccCCCceEEEeC--CeEEEEE
Q 028262 72 DNEKVKIYISLEGV-VQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKP--TRVVIML 140 (211)
Q Consensus 72 t~~~V~I~I~lk~v-~~e~v~V~f~~~sl~v~i~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~--~kIeI~L 140 (211)
....+.|.|.++++ +..++.+++.++.|.|.+.+ ..|.|.+ .|-.+|+++.++-+... ..+.|+|
T Consensus 259 ~p~~lvv~i~LP~~~s~~~i~LdV~~~~l~l~~~~---~~y~L~l-~LP~~V~~~~~~Akf~~~~~~L~vtl 326 (328)
T PF08190_consen 259 SPEELVVEIELPGVESASDIDLDVSEDRLSLSSPK---PKYRLDL-PLPYPVDEDNGKAKFDKKTKTLTVTL 326 (328)
T ss_pred CCceEEEEEECCCcCccceeEEEEeCCEEEEEeCC---CceEEEc-cCCCcccCCCceEEEccCCCEEEEEE
Confidence 36899999999999 88999999999999999853 2799998 99999999988777654 4688877
No 44
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=93.85 E-value=0.53 Score=34.13 Aligned_cols=68 Identities=7% Similarity=0.110 Sum_probs=51.0
Q ss_pred ecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeC-----CC---ceeEEecCCcCCCccCCCceEEE-eCCeEEEE
Q 028262 71 QDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDV-----QG---KNYRFTSPRLNQEIVPEKSKVLV-KPTRVVIM 139 (211)
Q Consensus 71 Qt~~~V~I~I~lk~v~~e~v~V~f~~~sl~v~i~~~-----~g---k~y~l~i~~L~~~I~pe~S~~kv-~~~kIeI~ 139 (211)
.+++...|.+.++|+.++++.|.+..+.|+|+.... .| ..|.-.+ .|-..|+++.-+-+. ..+-+.|.
T Consensus 4 e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~ge~~~~~~~~~~~~r~F~R~~-~LP~~Vd~~~v~A~~~~dGvL~I~ 80 (83)
T cd06477 4 EGKPMFQILLDVVQFRPEDIIIQVFEGWLLIKGQHGVRMDEHGFISRSFTRQY-QLPDGVEHKDLSAMLCHDGILVVE 80 (83)
T ss_pred cCCceEEEEEEcCCCCHHHeEEEEECCEEEEEEEEccccCCCCEEEEEEEEEE-ECCCCcchheEEEEEcCCCEEEEE
Confidence 356788899999999999999999999999998421 12 1234444 788899998877776 56666654
No 45
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=93.71 E-value=0.38 Score=35.21 Aligned_cols=67 Identities=16% Similarity=0.092 Sum_probs=50.7
Q ss_pred ecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeC-----CC-ce-----eEEecCCcCCCccCCCceEEEeCC-eEEE
Q 028262 71 QDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDV-----QG-KN-----YRFTSPRLNQEIVPEKSKVLVKPT-RVVI 138 (211)
Q Consensus 71 Qt~~~V~I~I~lk~v~~e~v~V~f~~~sl~v~i~~~-----~g-k~-----y~l~i~~L~~~I~pe~S~~kv~~~-kIeI 138 (211)
..++.+.|++.++|+.+++|.|.+..+.|+|+.... .+ .. |.-.+ .|-..|+++.-+-+..++ .+.|
T Consensus 5 ~~~~~~~v~adlPG~~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f-~LP~~Vd~d~i~A~~~~~~~l~i 83 (87)
T cd06482 5 CDSSNVLASVDVCGFEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEF-SLPPGVDEKDVTYSYGLGSVVKI 83 (87)
T ss_pred ccCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEE-ECCCCcChHHcEEEEcCCCEEEE
Confidence 356789999999999999999999999999998421 11 12 23334 777889999888888776 5555
No 46
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=90.00 E-value=2.6 Score=34.94 Aligned_cols=72 Identities=13% Similarity=0.165 Sum_probs=51.2
Q ss_pred eecCC-EEEEEEEeCCCCCCC-cEEEEEeeEEEEEEEeCCCceeEEecCCcCCCccCCCceEEEeCCeEEEEEeecCC
Q 028262 70 DQDNE-KVKIYISLEGVVQDK-MEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKASK 145 (211)
Q Consensus 70 ~Qt~~-~V~I~I~lk~v~~e~-v~V~f~~~sl~v~i~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI~L~K~~~ 145 (211)
.+.++ .+.|...|+||..++ +.|.+..+...|.+.. ++ .|.=.+ .|-.+ .++.-.+.+..+-++|.|.+.++
T Consensus 97 re~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~-~~-~~~krv-~L~~~-~~e~~~~t~nNgILEIri~~~~~ 170 (177)
T PF05455_consen 97 RERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRV-GE-KYLKRV-ALPWP-DPEITSATFNNGILEIRIRRTEE 170 (177)
T ss_pred EecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEec-CC-ceEeeE-ecCCC-ccceeeEEEeCceEEEEEeecCC
Confidence 33444 788999999997777 8888886666666542 22 343334 66666 46666888999999999999765
No 47
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=88.78 E-value=3.7 Score=30.29 Aligned_cols=68 Identities=16% Similarity=0.196 Sum_probs=50.5
Q ss_pred cCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeC-----CC---ceeEEecCCcCCCccCCCceEEEe-CCeEEEEE
Q 028262 72 DNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDV-----QG---KNYRFTSPRLNQEIVPEKSKVLVK-PTRVVIML 140 (211)
Q Consensus 72 t~~~V~I~I~lk~v~~e~v~V~f~~~sl~v~i~~~-----~g---k~y~l~i~~L~~~I~pe~S~~kv~-~~kIeI~L 140 (211)
+++.-.|.+.+.|..++++.|....+.|.|..... .| ..|.-.+ .|-..|+++.-+-.+. ++.+.|..
T Consensus 13 ~~~~f~v~ldv~gF~pEDL~Vkv~~~~L~V~Gkh~~~~~e~g~~~r~F~R~~-~LP~~Vd~~~v~s~l~~dGvL~Iea 89 (91)
T cd06480 13 SSEPWKVCVNVHSFKPEELTVKTKDGFVEVSGKHEEQQKEGGIVSKNFTKKI-QLPPEVDPVTVFASLSPEGLLIIEA 89 (91)
T ss_pred CCCcEEEEEEeCCCCHHHcEEEEECCEEEEEEEECcccCCCCEEEEEEEEEE-ECCCCCCchhEEEEeCCCCeEEEEc
Confidence 44556689999999999999999999999987421 11 2344445 7888999998888887 55666643
No 48
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=70.95 E-value=6.5 Score=26.25 Aligned_cols=31 Identities=29% Similarity=0.388 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhc-----chhHH---HHHHHHHHHHhh
Q 028262 7 LDLEELRQLRSIAK-----RPRIV---SLINSEIHTLEK 37 (211)
Q Consensus 7 ~dl~E~~~ll~~a~-----r~~v~---~~l~~~~~~~e~ 37 (211)
-||..++.|+.+|. ++.+. +.|..||.++|.
T Consensus 14 GDLa~MK~l~~~aeq~L~~~~~i~~al~~Lk~EIaklE~ 52 (53)
T PF08898_consen 14 GDLAQMKALAAQAEQQLAEAGDIAAALEKLKAEIAKLEA 52 (53)
T ss_pred CcHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHhc
Confidence 48999999998864 44444 456778888874
No 49
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=55.02 E-value=20 Score=23.76 Aligned_cols=38 Identities=24% Similarity=0.339 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHH-----HHhcchhHHHHHHHHHHHHhhhhhc
Q 028262 4 DLVLDLEELRQLR-----SIAKRPRIVSLINSEIHTLEKLSKE 41 (211)
Q Consensus 4 ~l~~dl~E~~~ll-----~~a~r~~v~~~l~~~~~~~e~~~~~ 41 (211)
++---|+|++.++ .....+.+.++|...+..|+..|..
T Consensus 12 ~lGfsL~eI~~~l~l~~~~~~~~~~~~~~l~~~~~~i~~~i~~ 54 (65)
T PF09278_consen 12 ELGFSLEEIRELLELYDQGDPPCADRRALLEEKLEEIEEQIAE 54 (65)
T ss_dssp HTT--HHHHHHHHHHCCSHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3445689999999 5577788899999999999987764
No 50
>PF11588 DUF3243: Protein of unknown function (DUF3243); InterPro: IPR021637 This family of proteins with unknown function includes uncharacterised proteins ymfJ and yflH. The family appears to be restricted to Firmicutes.; PDB: 3D0W_B.
Probab=50.92 E-value=23 Score=25.73 Aligned_cols=33 Identities=21% Similarity=0.385 Sum_probs=23.5
Q ss_pred CCCCchhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 028262 165 ERDPMAGIMDLMKNMYEEGDDEMKRTIAKAWTD 197 (211)
Q Consensus 165 ~~dp~~~l~~l~k~iY~~gDde~kRam~Ks~~E 197 (211)
..||...=..++|.|.+-||+|.|++|+-.++.
T Consensus 45 ~vdP~N~EerlLkELW~va~e~Eq~~LA~lmvK 77 (81)
T PF11588_consen 45 NVDPKNPEERLLKELWDVADEEEQHALANLMVK 77 (81)
T ss_dssp -----SHHHHHHHHHHHC--HHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 457877778899999999999999999998875
No 51
>PF08158 NUC130_3NT: NUC130/3NT domain; InterPro: IPR012977 This N-terminal domain is found in a novel nucleolar protein family defined by NUC130/133 [].
Probab=49.60 E-value=35 Score=22.53 Aligned_cols=33 Identities=21% Similarity=0.305 Sum_probs=28.1
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 028262 170 AGIMDLMKNMYEEGDDEMKRTIAKAWTDARSGK 202 (211)
Q Consensus 170 ~~l~~l~k~iY~~gDde~kRam~Ks~~ES~~k~ 202 (211)
..|.+++++=+...++|+|+++.+|..==|.|.
T Consensus 18 ~~L~~lL~~~~~~L~p~lR~~lv~aLiLLRnK~ 50 (52)
T PF08158_consen 18 QELIDLLRNHHTVLDPDLRMKLVKALILLRNKD 50 (52)
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHHHccC
Confidence 468899999999999999999999987665543
No 52
>cd04782 HTH_BltR Helix-Turn-Helix DNA binding domain of the BltR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BltR (BmrR-like transporter) of Bacillus subtilis, and related proteins; N-terminal domain. Blt, like Bmr, is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. These regulators are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. They share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=46.78 E-value=33 Score=25.02 Aligned_cols=34 Identities=12% Similarity=0.285 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHhhhhhc
Q 028262 8 DLEELRQLRSIAKRPRIVSLINSEIHTLEKLSKE 41 (211)
Q Consensus 8 dl~E~~~ll~~a~r~~v~~~l~~~~~~~e~~~~~ 41 (211)
-|+|++.++....-+.+..+|...+..|+.++..
T Consensus 59 ~l~eI~~~l~~~~~~~~~~~l~~~~~~l~~~i~~ 92 (97)
T cd04782 59 SLKEIKDYLDNRNPDELIELLKKQEKEIKEEIEE 92 (97)
T ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999998877788999999999999988865
No 53
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=43.79 E-value=37 Score=24.34 Aligned_cols=56 Identities=14% Similarity=0.383 Sum_probs=30.4
Q ss_pred EEEEEEeCCCCCCCcEEEEEee-EEEEEEEeCCCce-eEEecCCcCCCccCCCceEEEeCC
Q 028262 76 VKIYISLEGVVQDKMEAEFKQW-SFDVKFHDVQGKN-YRFTSPRLNQEIVPEKSKVLVKPT 134 (211)
Q Consensus 76 V~I~I~lk~v~~e~v~V~f~~~-sl~v~i~~~~gk~-y~l~i~~L~~~I~pe~S~~kv~~~ 134 (211)
|.+.+.+.|...+.+.+.|... .++|.+.+.+|+. |.+.-+..|-.+. ....+.++
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal---~~~~l~pG 59 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQAL---QEETLEPG 59 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT----------EEEEE-TT
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhhee---eEEEECCC
Confidence 6677888887788899998875 8889998766644 6666666666555 24455554
No 54
>PF04818 CTD_bind: RNA polymerase II-binding domain.; InterPro: IPR006903 This entry represents a conserved region found in a number of uncharacterised eukaryotic proteins.; PDB: 2L0I_A 2KM4_A 3D9I_B 3D9N_B 3D9O_A 3D9P_B 3D9K_A 3D9M_A 3D9J_A 3D9L_A ....
Probab=38.38 E-value=43 Score=22.30 Aligned_cols=25 Identities=16% Similarity=0.379 Sum_probs=20.5
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHH
Q 028262 170 AGIMDLMKNMYEEGDDEMKRTIAKA 194 (211)
Q Consensus 170 ~~l~~l~k~iY~~gDde~kRam~Ks 194 (211)
..|..+|..+|..+|+++++.|.+-
T Consensus 29 ~~l~~~~~~~~~~~~~~~~~kv~rl 53 (64)
T PF04818_consen 29 PVLPDAFAHAYKNVDPEVRKKVQRL 53 (64)
T ss_dssp CCHHHHHHHHCCCS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3578999999999999999988765
No 55
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=37.20 E-value=80 Score=17.81 Aligned_cols=26 Identities=8% Similarity=0.321 Sum_probs=20.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHH
Q 028262 172 IMDLMKNMYEEGDDEMKRTIAKAWTD 197 (211)
Q Consensus 172 l~~l~k~iY~~gDde~kRam~Ks~~E 197 (211)
|+..+.++..|-+++.|.+...+..+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~ 26 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGA 26 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 35567788899999999999887653
No 56
>cd04777 HTH_MerR-like_sg1 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 1), N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=36.13 E-value=60 Score=23.95 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhc---------chhHHHHHHHHHHHHhhhhhc
Q 028262 7 LDLEELRQLRSIAK---------RPRIVSLINSEIHTLEKLSKE 41 (211)
Q Consensus 7 ~dl~E~~~ll~~a~---------r~~v~~~l~~~~~~~e~~~~~ 41 (211)
--|+|++.+++... ++.+..+|...+..|+.++..
T Consensus 56 ~sL~eI~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~ 99 (107)
T cd04777 56 FSLIEIQKIFSYKRLTKSRTHEDQDYYKSFLKNKKDELEKEIED 99 (107)
T ss_pred CCHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 35788899887632 356889999999999988765
No 57
>COG4856 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.63 E-value=1e+02 Score=28.79 Aligned_cols=66 Identities=18% Similarity=0.213 Sum_probs=41.1
Q ss_pred EEEEEeCCCCCCCcEEEEEeeEEEEEEE--eCCCceeEEecCCcCCCccCCCceEEEeCCeEEEEEeecCCC
Q 028262 77 KIYISLEGVVQDKMEAEFKQWSFDVKFH--DVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKASKG 146 (211)
Q Consensus 77 ~I~I~lk~v~~e~v~V~f~~~sl~v~i~--~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI~L~K~~~~ 146 (211)
+|+|+++|...-.+..++.+. |.|.+. +..-..|. + +|-.+..|+.-++.|.+.++.+++.|+...
T Consensus 71 tV~Vtl~G~ns~~~~~~~~~d-FkV~ADLt~a~~Gt~e--v-kl~ve~l~~~ltvsV~P~~~~Vti~kk~tk 138 (403)
T COG4856 71 TVTVTLKGPNSIVLKSEKPED-FKVVADLTHAGVGTHE--V-KLQVEGLPDGLTVSVNPEKATVTIEKKVTK 138 (403)
T ss_pred EEEEEEeCCcceeeeeecCcC-eEEEEEhhhcCCCceE--e-eeEeecCCCCceEEEccceeEEEEeeeeEE
Confidence 355555664333444444444 555542 12112333 2 777888899999999999999999887654
No 58
>PF10759 DUF2587: Protein of unknown function (DUF2587); InterPro: IPR019695 This entry represents proteins found Actinobacteria sp. The function is not known.
Probab=32.62 E-value=36 Score=27.70 Aligned_cols=32 Identities=31% Similarity=0.314 Sum_probs=26.4
Q ss_pred HHHHHH-HHHHhcchhHHHHHHHHHHHHhhhhh
Q 028262 9 LEELRQ-LRSIAKRPRIVSLINSEIHTLEKLSK 40 (211)
Q Consensus 9 l~E~~~-ll~~a~r~~v~~~l~~~~~~~e~~~~ 40 (211)
|+|+++ =|.-|.|.|++++=..-|+.||.-+.
T Consensus 43 LEEVraApLDeAsR~RL~eIH~~SI~ELedgLa 75 (169)
T PF10759_consen 43 LEEVRAAPLDEASRNRLREIHERSIKELEDGLA 75 (169)
T ss_pred HHHHHcCcCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 777775 36679999999999999999997554
No 59
>PF12510 Smoothelin: Smoothelin cytoskeleton protein; InterPro: IPR022189 This domain family is found in eukaryotes, and is approximately 50 amino acids in length. The family is found in association with PF00307 from PFAM. Smoothelin is a cytoskeletal protein specifically expressed in differentiated smooth muscle cells and has been shown to co-localize with smooth muscle alpha actin.
Probab=32.53 E-value=1e+02 Score=20.61 Aligned_cols=30 Identities=20% Similarity=0.131 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHh
Q 028262 7 LDLEELRQLRSIAKRPRIVSLINSEIHTLE 36 (211)
Q Consensus 7 ~dl~E~~~ll~~a~r~~v~~~l~~~~~~~e 36 (211)
.|++.|..||+.++==--+.++-+.|+.|-
T Consensus 22 ~De~~L~kmLe~~~dyeeRr~IRaaiR~lr 51 (54)
T PF12510_consen 22 EDEEVLEKMLEATTDYEERRRIRAAIRELR 51 (54)
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 489999999999764444444445555554
No 60
>PF09829 DUF2057: Uncharacterized protein conserved in bacteria (DUF2057); InterPro: IPR018635 The proteins in this entry are functionally uncharacterised.
Probab=29.62 E-value=51 Score=26.99 Aligned_cols=25 Identities=12% Similarity=0.331 Sum_probs=21.3
Q ss_pred chhHHHHHHHHhcCCCHHHHHHHHH
Q 028262 169 MAGIMDLMKNMYEEGDDEMKRTIAK 193 (211)
Q Consensus 169 ~~~l~~l~k~iY~~gDde~kRam~K 193 (211)
+.....|++..|..+|+++|++.++
T Consensus 164 ~~~~~~~Lq~wy~qAs~~eRk~F~~ 188 (189)
T PF09829_consen 164 ESEALQMLQYWYLQASKEERKAFLK 188 (189)
T ss_pred cccHHHHHHHHHHhCCHHHHHHHhc
Confidence 4456789999999999999998764
No 61
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=26.91 E-value=1.8e+02 Score=23.58 Aligned_cols=50 Identities=14% Similarity=0.110 Sum_probs=30.2
Q ss_pred EEEEEeCCCCCCCcEEEEEeeEEEEEEEe--CCCceeEEecCCcCCCccCCCceEEEeCCeE
Q 028262 77 KIYISLEGVVQDKMEAEFKQWSFDVKFHD--VQGKNYRFTSPRLNQEIVPEKSKVLVKPTRV 136 (211)
Q Consensus 77 ~I~I~lk~v~~e~v~V~f~~~sl~v~i~~--~~gk~y~l~i~~L~~~I~pe~S~~kv~~~kI 136 (211)
++++++|+. .+..+-|+++++.|.+.+ ..+..- .-+.++.++|++.++.|
T Consensus 71 t~t~yiKNt--G~~~~~fd~~sitVliDG~iv~~a~~--------~~~~~~gs~i~l~PG~V 122 (154)
T COG3354 71 TYTFYIKNT--GSDSIAFDNTSITVLIDGNIVTPAYV--------TFTSVNGSSIRLSPGQV 122 (154)
T ss_pred EEEEEEecC--CCcccccCCCeEEEEEcCcEeccceE--------EEEecCCCeeEecCCce
Confidence 455666765 344567999999998854 111111 22456678887776643
No 62
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=26.26 E-value=1.1e+02 Score=20.85 Aligned_cols=30 Identities=17% Similarity=0.306 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHHHHHHHhcchhHHHHHHHH
Q 028262 2 AEDLVLDLEELRQLRSIAKRPRIVSLINSE 31 (211)
Q Consensus 2 ~~~l~~dl~E~~~ll~~a~r~~v~~~l~~~ 31 (211)
.+.++..+.+.++++..|++|.=++....-
T Consensus 7 ~e~~~~f~~d~~rvl~~~~KPd~~Ef~~ia 36 (61)
T PRK09400 7 QENVKNFLEDYKRVLKVARKPTREEFLLVA 36 (61)
T ss_pred HHhHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 467888999999999999999988876543
No 63
>PF09087 Cyc-maltodext_N: Cyclomaltodextrinase, N-terminal; InterPro: IPR015171 This domain is found at the N terminus of cyclomaltodextrinase. The domain assumes a beta-sandwich structure composed of the eight antiparallel beta-strands. A ten residue linker is also present at the C-terminal end, which connects the N-terminal domain to a distal domain in the protein. This domain participates in oligomerisation of the protein, wherein the N-terminal domain of one subunit contacts the active centre of the other subunit, and is also required for binding of cyclodextrin to substrate []. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=25.86 E-value=2.3e+02 Score=20.77 Aligned_cols=36 Identities=11% Similarity=0.256 Sum_probs=20.5
Q ss_pred eeccceeEeecCCEEEEEEEeCCCCCCCcEEEEEee
Q 028262 62 ITLGSFSWDQDNEKVKIYISLEGVVQDKMEAEFKQW 97 (211)
Q Consensus 62 ~~i~~y~W~Qt~~~V~I~I~lk~v~~e~v~V~f~~~ 97 (211)
+++.+..=.++.++++|++.+.+..+..+.+.|...
T Consensus 37 V~i~~v~~~~npNYLFv~L~i~~akpg~~~i~~~~~ 72 (88)
T PF09087_consen 37 VTIKKVVKTDNPNYLFVYLDISDAKPGTFTINFKKG 72 (88)
T ss_dssp EEEEEEEE-SSTTEEEEEEEE-T--SEEEEEEEEET
T ss_pred eEEEEEEecCCCCEEEEEEecCCCCCcEEEEEEEcC
Confidence 455566667788888888877765555555554443
No 64
>PRK06746 peptide chain release factor 2; Provisional
Probab=25.26 E-value=1.3e+02 Score=27.31 Aligned_cols=38 Identities=18% Similarity=0.143 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhhhhc
Q 028262 4 DLVLDLEELRQLRSIAKRPRIVSLINSEIHTLEKLSKE 41 (211)
Q Consensus 4 ~l~~dl~E~~~ll~~a~r~~v~~~l~~~~~~~e~~~~~ 41 (211)
+...|++++..|+..+.-+.+++.+..|+..|+.++..
T Consensus 35 ~~~~d~~~~~el~~~~~d~e~~~~a~~e~~~l~~~l~~ 72 (326)
T PRK06746 35 ETFENLEITHELLKEEYDEDLHEELESEVKGLIQEMNE 72 (326)
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 45577788888876667788999999999998877654
No 65
>cd04788 HTH_NolA-AlbR Helix-Turn-Helix DNA binding domain of the transcription regulators NolA and AlbR. Helix-turn-helix (HTH) transcription regulators NolA and AlbR, N-terminal domain. In Bradyrhizobium (Arachis) sp. NC92, NolA is required for efficient nodulation of host plants. In Xanthomonas albilineans, AlbR regulates the expression of the pathotoxin, albicidin. These proteins are putatively comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. They share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=25.15 E-value=1.2e+02 Score=22.06 Aligned_cols=33 Identities=15% Similarity=0.148 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHhhhhhc
Q 028262 8 DLEELRQLRSIAKRPRIVSLINSEIHTLEKLSKE 41 (211)
Q Consensus 8 dl~E~~~ll~~a~r~~v~~~l~~~~~~~e~~~~~ 41 (211)
-|+|++.++.... ..+..+|...+..|+.++..
T Consensus 59 ~l~eI~~~l~~~~-~~~~~~l~~~~~~l~~~i~~ 91 (96)
T cd04788 59 SLREIGRALDGPD-FDPLELLRRQLARLEEQLEL 91 (96)
T ss_pred CHHHHHHHHhCCC-hhHHHHHHHHHHHHHHHHHH
Confidence 5788999998654 37889999999999988764
No 66
>TIGR00327 secE_euk_arch protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic. This model describes archaeal SEC61-like and eukaryotic SEC61 but not bacterial secE proteins, for which a Pfam pfam00584 (SecE) has been created.
Probab=24.84 E-value=1.1e+02 Score=20.92 Aligned_cols=30 Identities=17% Similarity=0.246 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHHHHHHhcchhHHHHHHHH
Q 028262 2 AEDLVLDLEELRQLRSIAKRPRIVSLINSE 31 (211)
Q Consensus 2 ~~~l~~dl~E~~~ll~~a~r~~v~~~l~~~ 31 (211)
++.++..+.|..+++..|+.|.=++....-
T Consensus 3 ~e~~~~f~k~~~r~lk~~~KPd~~Ef~~ia 32 (61)
T TIGR00327 3 IEAPVEFIKEGTRVLAVCKKPDLEEYLKVA 32 (61)
T ss_pred cchHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 577899999999999999999998887654
No 67
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=24.82 E-value=1.2e+02 Score=22.48 Aligned_cols=34 Identities=21% Similarity=0.360 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHhhhhhc
Q 028262 8 DLEELRQLRSIAKRPRIVSLINSEIHTLEKLSKE 41 (211)
Q Consensus 8 dl~E~~~ll~~a~r~~v~~~l~~~~~~~e~~~~~ 41 (211)
-|+|++.|+....-+.+..+|...++.|+.++..
T Consensus 60 sl~~i~~l~~~~~~~~~~~~l~~~~~~l~~~i~~ 93 (108)
T cd01107 60 PLEEIKEILDADNDDELRKLLREKLAELEAEIEE 93 (108)
T ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888766578999999999999988765
No 68
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=24.58 E-value=1.3e+02 Score=22.54 Aligned_cols=35 Identities=23% Similarity=0.401 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhc-----chhHHHHHHHHHHHHhhhhhc
Q 028262 7 LDLEELRQLRSIAK-----RPRIVSLINSEIHTLEKLSKE 41 (211)
Q Consensus 7 ~dl~E~~~ll~~a~-----r~~v~~~l~~~~~~~e~~~~~ 41 (211)
--|+|++.++.... -..+..+|...+..|+.++..
T Consensus 58 ~sl~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~ 97 (123)
T cd04770 58 FSLAEIRELLSLRDDGAAPCAEVRALLEEKLAEVEAKIAE 97 (123)
T ss_pred CCHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888887643 256788898988888877764
No 69
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers. The enzyme is part of a plasmid-encoded pathway, which enables bacteria harbouring the plasmid to use various aromatic hydrocarbons as their sole sources of carbon and energy. The enzyme is a barrel-shaped hexamer, which can be viewed as a trimer of dimers. The hexamer contains a hydrophobic core formed by three beta-sheets and surrounded by three pairs of alpha-helices. Each 4-OT monomer of 62 amino acids has a relatively simple beta-alpha-beta fold as described by the structure of the enzyme from Pseudomonas putida []. The monomer begins with a conserved proline at the start of a beta-strand, followed by an alpha-helix and a 310 helix preceding a second parallel beta-strand, and ends with a beta-hairpin near the C terminus. The dimer results from antiparallel interactions between the beta-sheets and alpha-helices of the two monomers, forming a four-stranded beta-sheet with antiparallel alpha-helices on one side, creating two active sites, one at each end of the beta-sheet. Three dimers further associate to form a hexamer by the interactions of the strands of the C-terminal beta-hairpin loops with the edges of the four-stranded beta-sheets of neighbouring dimers, creating a series of cross-links that stabilise the hexamer Pro-1 of the mature protein functions as the general base while Arg-39 and an ordered water molecule each provide a hydrogen bond to the C-2 oxygen of substrate. Arg-39 plays an additional role in the binding of the C-1 carboxylate group. Arg-11 participates both in substrate binding and in catalysis. It interacts with the C-6 carboxylate group, thereby holding the substrate in place and drawing electron density to the C-5 position. The hydrophobic nature of the active site, which lowers the pKa of Pro-1 and provides a favourable environment for catalysis, is largely maintained by Phe-50. Because several Arg residues located near the active site are not conserved among all members of this family and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.; GO: 0016853 isomerase activity, 0006725 cellular aromatic compound metabolic process; PDB: 4OTA_H 4OTC_G 4OTB_J 2FM7_A 1BJP_B 1S0Y_K 3EJ9_E 3EJ7_K 3EJ3_I 3MB2_A ....
Probab=24.19 E-value=56 Score=21.24 Aligned_cols=20 Identities=45% Similarity=0.466 Sum_probs=15.5
Q ss_pred HhcCCCHHHHHHHHHHHHHh
Q 028262 179 MYEEGDDEMKRTIAKAWTDA 198 (211)
Q Consensus 179 iY~~gDde~kRam~Ks~~ES 198 (211)
|+...|++.|+++++..++.
T Consensus 7 ~~~g~~~e~K~~l~~~it~~ 26 (60)
T PF01361_consen 7 IPEGRTAEQKRELAEAITDA 26 (60)
T ss_dssp EESTS-HHHHHHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHHHH
Confidence 46667899999999988775
No 70
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=24.13 E-value=1.3e+02 Score=23.14 Aligned_cols=34 Identities=26% Similarity=0.458 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhcc-----hhHHHHHHHHHHHHhhhhhc
Q 028262 8 DLEELRQLRSIAKR-----PRIVSLINSEIHTLEKLSKE 41 (211)
Q Consensus 8 dl~E~~~ll~~a~r-----~~v~~~l~~~~~~~e~~~~~ 41 (211)
=|+|++.+++.... +.++.+|...+..|+.+|..
T Consensus 59 sL~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~ 97 (133)
T cd04787 59 SLKDIKEILSHADQGESPCPMVRRLIEQRLAETERRIKE 97 (133)
T ss_pred CHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888876432 35788888888888877664
No 71
>PF00159 Hormone_3: Pancreatic hormone peptide; InterPro: IPR001955 Pancreatic hormone (PP) [] is a peptide synthesized in pancreatic islets of Langherhans, which acts as a regulator of pancreatic and gastrointestinal functions. The hormone is produced as a larger propeptide, which is enzymatically cleaved to yield the mature active peptide: this is 36 amino acids in length [] and has an amidated C terminus []. The hormone has a globular structure, residues 2-8 forming a left-handed poly-proline-II-like helix, residues 9-13 a beta turn, and 14-32 an alpha-helix,held close to the first helix by hydrophobic interactions []. Unlike glucagon, another peptide hormone, the structure of pancreatic peptide is preserved in aqueous solution []. Both N and C termini are required for activity: receptor binding and activation functions may reside in the N and C termini respectively []. Pancreatic hormone is part of a wider family of active peptides that includes: Neuropeptide Y (NPY) [], one of the most abundant peptides in the mammalian nervous system. NPY is implicated in the control of feeding and the secretion of the gonadotrophin-releasing hormone. Peptide YY (PYY) []. PPY is a gut peptide that inhibits exocrine pancreatic secretion, has a vasoconstrictory action and inhibits jejunal and colonic mobility. Various NPY and PYY-like polypeptides from fish and amphibians [, ]. Neuropeptide F (NPF) from invertebrates such as worms and snail. Skin peptide Tyr-Tyr (SPYY) from the frog Phyllomedusa bicolor. SPYY shows a large spectra of antibacterial and antifungal activity. All these peptides are 36 to 39 amino acids long. Like most active peptides, their C-terminal is amidated and they are synthesized as larger protein precursors.; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 1LJV_A 1BBA_A 1V1D_A 1PPT_A 2H3T_A 2H4B_A 2BF9_A 2H3S_B 1K8V_A 2DF0_A ....
Probab=23.98 E-value=1e+02 Score=18.91 Aligned_cols=22 Identities=32% Similarity=0.526 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHHHHHHhcchh
Q 028262 2 AEDLVLDLEELRQLRSIAKRPR 23 (211)
Q Consensus 2 ~~~l~~dl~E~~~ll~~a~r~~ 23 (211)
.|||+.=+.+|+.-+...+|||
T Consensus 14 peel~~Y~~~L~~Y~~lvtRpR 35 (36)
T PF00159_consen 14 PEELAQYYAALRHYINLVTRPR 35 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHccCC
Confidence 4788999999999999999997
No 72
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=23.77 E-value=1.5e+02 Score=27.39 Aligned_cols=39 Identities=26% Similarity=0.380 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhhhhc
Q 028262 3 EDLVLDLEELRQLRSIAKRPRIVSLINSEIHTLEKLSKE 41 (211)
Q Consensus 3 ~~l~~dl~E~~~ll~~a~r~~v~~~l~~~~~~~e~~~~~ 41 (211)
..++.||++.+.+|...+=|..+++...||..++..+..
T Consensus 56 ~~~~~~l~~a~~~l~~~~D~em~ema~~Ei~~~~~~~~~ 94 (363)
T COG0216 56 KKAQEDLEDAKEMLAEEKDPEMREMAEEEIKELEAKIEE 94 (363)
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999999999988876654
No 73
>smart00340 HALZ homeobox associated leucin zipper.
Probab=23.30 E-value=56 Score=20.84 Aligned_cols=13 Identities=38% Similarity=0.644 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHH
Q 028262 4 DLVLDLEELRQLR 16 (211)
Q Consensus 4 ~l~~dl~E~~~ll 16 (211)
-|+.+|+||++|-
T Consensus 23 RL~ke~~eLralk 35 (44)
T smart00340 23 RLQKEVQELRALK 35 (44)
T ss_pred HHHHHHHHHHhcc
Confidence 4788888888774
No 74
>cd04786 HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic su
Probab=23.18 E-value=1.2e+02 Score=23.45 Aligned_cols=34 Identities=21% Similarity=0.448 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHh----cchhHHHHHHHHHHHHhhhhhc
Q 028262 8 DLEELRQLRSIA----KRPRIVSLINSEIHTLEKLSKE 41 (211)
Q Consensus 8 dl~E~~~ll~~a----~r~~v~~~l~~~~~~~e~~~~~ 41 (211)
-|+|++.++... ....+..+|...+..|+.++..
T Consensus 59 sL~eI~~ll~~~~~~~~~~~~~~~l~~k~~~i~~~i~~ 96 (131)
T cd04786 59 SLDEIRQLLPADASNWQHDELLAALERKVADIEALEAR 96 (131)
T ss_pred CHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 478889998743 3467888899888888877664
No 75
>PF09061 Stirrup: Stirrup; InterPro: IPR015146 The Stirrup domain, found in the prokaryotic protein ribonucleotide reductase, has a molecular mass of 9 kDa and is folded into an alpha/beta structure. It allows for binding of the reductase to DNA via electrostatic interactions, since it has a predominance of positive charges distributed on its surface []. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1DQ3_A.
Probab=22.98 E-value=70 Score=22.41 Aligned_cols=22 Identities=27% Similarity=0.702 Sum_probs=16.5
Q ss_pred hhHHHHHHHHhc-CCCHHHHHHH
Q 028262 170 AGIMDLMKNMYE-EGDDEMKRTI 191 (211)
Q Consensus 170 ~~l~~l~k~iY~-~gDde~kRam 191 (211)
+-|..|++++|+ .+++|.||+.
T Consensus 53 avlvkmlrkly~~tk~e~vkrml 75 (79)
T PF09061_consen 53 AVLVKMLRKLYEATKNEEVKRML 75 (79)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHhhchHHHHHHH
Confidence 568899999995 6888888874
No 76
>PF14098 SSPI: Small, acid-soluble spore protein I
Probab=22.62 E-value=1.3e+02 Score=20.85 Aligned_cols=26 Identities=15% Similarity=0.387 Sum_probs=22.5
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHH
Q 028262 171 GIMDLMKNMYEEGDDEMKRTIAKAWT 196 (211)
Q Consensus 171 ~l~~l~k~iY~~gDde~kRam~Ks~~ 196 (211)
||--||--+|.++|++.|..|+..-.
T Consensus 37 GLGVlFE~~W~~~~~~ek~~m~~~l~ 62 (65)
T PF14098_consen 37 GLGVLFEVIWKNSDESEKQEMVNTLE 62 (65)
T ss_pred chHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 56679999999999999999987654
No 77
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=22.09 E-value=4.4e+02 Score=21.54 Aligned_cols=72 Identities=11% Similarity=0.229 Sum_probs=52.0
Q ss_pred cCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeC-----CC---ceeEEecCCcCCCccCCCceEEEeCC-eEEEEEee
Q 028262 72 DNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDV-----QG---KNYRFTSPRLNQEIVPEKSKVLVKPT-RVVIMLFK 142 (211)
Q Consensus 72 t~~~V~I~I~lk~v~~e~v~V~f~~~sl~v~i~~~-----~g---k~y~l~i~~L~~~I~pe~S~~kv~~~-kIeI~L~K 142 (211)
+.+...|.+.+....++.+.|+...+.|.|..+.. .| ++|.=.+ .|-..++|+.-+-.+.++ .+.|.-.|
T Consensus 70 ~~~~F~V~lDV~~F~PeEl~Vk~~~~~l~V~gkHeer~d~~G~v~R~F~R~y-~LP~~vdp~~V~S~LS~dGvLtI~ap~ 148 (173)
T KOG3591|consen 70 DKDKFEVNLDVHQFKPEELKVKTDDNTLEVEGKHEEKEDEHGYVSRSFVRKY-LLPEDVDPTSVTSTLSSDGVLTIEAPK 148 (173)
T ss_pred CCCcEEEEEEcccCcccceEEEeCCCEEEEEeeeccccCCCCeEEEEEEEEe-cCCCCCChhheEEeeCCCceEEEEccC
Confidence 34556678878888899999999999888887431 12 3444444 888999999877777765 66776665
Q ss_pred cC
Q 028262 143 AS 144 (211)
Q Consensus 143 ~~ 144 (211)
..
T Consensus 149 ~~ 150 (173)
T KOG3591|consen 149 PP 150 (173)
T ss_pred CC
Confidence 43
No 78
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=21.48 E-value=76 Score=20.87 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=20.0
Q ss_pred HhcCCCHHHHHHHHHHHHHhcCCCCCC
Q 028262 179 MYEEGDDEMKRTIAKAWTDARSGKTAD 205 (211)
Q Consensus 179 iY~~gDde~kRam~Ks~~ES~~k~~~~ 205 (211)
|..+-++|+||+++++.+++-.+-.+-
T Consensus 8 ~~~Grs~EqK~~L~~~it~a~~~~~~~ 34 (60)
T PRK02289 8 LFEGRSQEQKNALAREVTEVVSRIAKA 34 (60)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHhCc
Confidence 345669999999999998876554443
No 79
>KOG3247 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.48 E-value=51 Score=31.07 Aligned_cols=82 Identities=16% Similarity=0.075 Sum_probs=55.5
Q ss_pred cceeEeecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEeCCCceeEEecCCcCCCccCCC---ceEEEeCCeEEEEEe
Q 028262 65 GSFSWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEK---SKVLVKPTRVVIMLF 141 (211)
Q Consensus 65 ~~y~W~Qt~~~V~I~I~lk~v~~e~v~V~f~~~sl~v~i~~~~gk~y~l~i~~L~~~I~pe~---S~~kv~~~kIeI~L~ 141 (211)
++|.-.|.+++++|.|+.+-.....+.+...+..+.+++. +|-+.+ .+.+.+..+. .+|-.+++.+.|.+-
T Consensus 4 p~f~itqdee~~~L~I~~p~~~a~~le~~a~~nm~~f~~~-----pyflrl-~~p~~~~~d~~~n~s~d~kd~~~~vK~~ 77 (466)
T KOG3247|consen 4 PQFAITQDEEFCTLIIPRPLNQASKLEIDAAANMASFSAG-----PYFLRL-AGPGMVEDDARPNASYDAKDGYAHVKVP 77 (466)
T ss_pred ceeeeeecCceEEEEeeccccchhccchhhHhhhhhhccc-----hhHHhh-cCcchhhhhccccCccccccceeEEeec
Confidence 5788899999999999998555566666666776666653 233322 3334333332 256677889999999
Q ss_pred ecCCC-Cccccc
Q 028262 142 KASKG-NWLDLQ 152 (211)
Q Consensus 142 K~~~~-~W~~L~ 152 (211)
|..++ +.+.|.
T Consensus 78 K~~~~e~F~~Ld 89 (466)
T KOG3247|consen 78 KFHPGEHFSDLD 89 (466)
T ss_pred CCCccccccchh
Confidence 97776 777664
No 80
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=21.25 E-value=1.2e+02 Score=20.79 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=20.6
Q ss_pred HHHHHhcchhHHHHHHHHHHHHhhhhhc
Q 028262 14 QLRSIAKRPRIVSLINSEIHTLEKLSKE 41 (211)
Q Consensus 14 ~ll~~a~r~~v~~~l~~~~~~~e~~~~~ 41 (211)
+||+-+.=..-..+|+.||..++.++..
T Consensus 23 sllsV~El~eRIalLq~EIeRlkAe~~k 50 (65)
T COG5509 23 SLLSVAELEERIALLQAEIERLKAELAK 50 (65)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555455578999999999998876
No 81
>PRK09458 pspB phage shock protein B; Provisional
Probab=21.06 E-value=1.5e+02 Score=21.17 Aligned_cols=30 Identities=27% Similarity=0.366 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhhhhc
Q 028262 6 VLDLEELRQLRSIAKRPRIVSLINSEIHTLEKLSKE 41 (211)
Q Consensus 6 ~~dl~E~~~ll~~a~r~~v~~~l~~~~~~~e~~~~~ 41 (211)
+.|.+.|..|.+.|.| +..+|..||.-+..
T Consensus 38 ~~d~~~L~~L~~~A~r------m~~RI~tLE~ILDa 67 (75)
T PRK09458 38 QEEQQRLAQLTEKAER------MRERIQALEAILDA 67 (75)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHcc
Confidence 4588889999998876 56788888876644
No 82
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=21.04 E-value=2.2e+02 Score=19.85 Aligned_cols=30 Identities=23% Similarity=0.337 Sum_probs=14.8
Q ss_pred EEE-EeeEEEEEEEeCCCceeEEecCCcCCC
Q 028262 92 AEF-KQWSFDVKFHDVQGKNYRFTSPRLNQE 121 (211)
Q Consensus 92 V~f-~~~sl~v~i~~~~gk~y~l~i~~L~~~ 121 (211)
++| .+....|.+.+.+|+.+.+.+..-.+.
T Consensus 48 ve~~~~g~yev~~~~~dG~~~ev~vD~~tG~ 78 (83)
T PF13670_consen 48 VEFDDDGCYEVEARDKDGKKVEVYVDPATGE 78 (83)
T ss_pred EEEcCCCEEEEEEEECCCCEEEEEEcCCCCe
Confidence 445 333555555555666665554333333
No 83
>TIGR02047 CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=20.47 E-value=1.5e+02 Score=22.72 Aligned_cols=34 Identities=21% Similarity=0.286 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHh-----cchhHHHHHHHHHHHHhhhhhc
Q 028262 8 DLEELRQLRSIA-----KRPRIVSLINSEIHTLEKLSKE 41 (211)
Q Consensus 8 dl~E~~~ll~~a-----~r~~v~~~l~~~~~~~e~~~~~ 41 (211)
=|+|++.++... +.+.+..+|...+..|+.+|..
T Consensus 59 sL~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~ 97 (127)
T TIGR02047 59 SLAEIRQLLRYQDKPEKSCSDVNALLDEHISHVRARIIK 97 (127)
T ss_pred CHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 477888888743 2356888899999988877765
No 84
>cd04784 HTH_CadR-PbrR Helix-Turn-Helix DNA binding domain of the CadR and PbrR transcription regulators. Helix-turn-helix (HTH) CadR and PbrR transcription regulators including Pseudomonas aeruginosa CadR and Ralstonia metallidurans PbrR that regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which form a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=20.47 E-value=1.6e+02 Score=22.28 Aligned_cols=35 Identities=20% Similarity=0.384 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhc-----chhHHHHHHHHHHHHhhhhhc
Q 028262 7 LDLEELRQLRSIAK-----RPRIVSLINSEIHTLEKLSKE 41 (211)
Q Consensus 7 ~dl~E~~~ll~~a~-----r~~v~~~l~~~~~~~e~~~~~ 41 (211)
--|+|++.++.... .+.+..+|...+..|+.+|..
T Consensus 58 ~sL~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~ 97 (127)
T cd04784 58 MSLDEIRTLLQLQDDPEASCAEVNALIDEHLAHVRARIAE 97 (127)
T ss_pred CCHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888887543 357788888888888877664
No 85
>TIGR02044 CueR Cu(I)-responsive transcriptional regulator. This model represents the copper-, silver- and gold- (I) responsive transcriptional activator of the gamma proteobacterial copper efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X7-Cys. This family also lacks a conserved cysteine at the N-terminal end of the dimerization helix which is required for the binding of divalent metals such as zinc; here it is replaced by a serine residue.
Probab=20.25 E-value=1.6e+02 Score=22.40 Aligned_cols=34 Identities=18% Similarity=0.282 Sum_probs=24.6
Q ss_pred HHHHHHHHHHH-----hcchhHHHHHHHHHHHHhhhhhc
Q 028262 8 DLEELRQLRSI-----AKRPRIVSLINSEIHTLEKLSKE 41 (211)
Q Consensus 8 dl~E~~~ll~~-----a~r~~v~~~l~~~~~~~e~~~~~ 41 (211)
-|+|++.++.. ...+.+..+|...+..|+.+|..
T Consensus 59 sL~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~ 97 (127)
T TIGR02044 59 SLEECKELLNLWNDPNRTSADVKARTLEKVAEIERKISE 97 (127)
T ss_pred CHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888874 23466778888888888877654
No 86
>cd04768 HTH_BmrR-like Helix-Turn-Helix DNA binding domain of BmrR-like transcription regulators. Helix-turn-helix (HTH) BmrR-like transcription regulators (TipAL, Mta, SkgA, BmrR, and BltR), N-terminal domain. These proteins have been shown to regulate expression of specific regulons in response to various toxic substances, antibiotics, or oxygen radicals in Bacillus subtilis, Streptomyces, and Caulobacter crescentus. They are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=20.22 E-value=1.6e+02 Score=21.24 Aligned_cols=34 Identities=9% Similarity=0.277 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHhhhhhc
Q 028262 7 LDLEELRQLRSIAKRPRIVSLINSEIHTLEKLSKE 41 (211)
Q Consensus 7 ~dl~E~~~ll~~a~r~~v~~~l~~~~~~~e~~~~~ 41 (211)
--|+|++.++.... ..+..+|...+..|+.++..
T Consensus 58 ~~l~~I~~~l~~~~-~~~~~~l~~~~~~l~~~i~~ 91 (96)
T cd04768 58 FSLAEIKELLDTEM-EELTAMLLEKKQAIQQKIDR 91 (96)
T ss_pred CCHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHH
Confidence 35788889888654 48999999999999988764
Done!