Query 028264
Match_columns 211
No_of_seqs 121 out of 1220
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 08:49:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028264.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028264hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 2.3E-52 5E-57 351.5 20.9 206 5-211 1-212 (316)
2 KOG1575 Voltage-gated shaker-l 100.0 2.2E-50 4.7E-55 335.4 18.9 207 4-211 11-223 (336)
3 COG0656 ARA1 Aldo/keto reducta 100.0 1.9E-49 4.1E-54 324.0 15.2 184 5-208 3-193 (280)
4 TIGR01293 Kv_beta voltage-depe 100.0 5E-48 1.1E-52 326.3 20.0 202 7-211 1-212 (317)
5 PRK09912 L-glyceraldehyde 3-ph 100.0 1.3E-47 2.9E-52 327.2 21.0 206 3-211 11-229 (346)
6 KOG1577 Aldo/keto reductase fa 100.0 2E-47 4.3E-52 312.5 14.4 186 1-208 1-211 (300)
7 PRK10625 tas putative aldo-ket 100.0 5.2E-46 1.1E-50 317.5 20.0 202 5-210 1-239 (346)
8 cd06660 Aldo_ket_red Aldo-keto 100.0 9.7E-46 2.1E-50 307.6 20.2 198 7-209 1-203 (285)
9 PLN02587 L-galactose dehydroge 100.0 2.2E-45 4.7E-50 309.9 19.7 199 7-210 1-210 (314)
10 PRK10376 putative oxidoreducta 100.0 4E-45 8.8E-50 305.1 20.7 206 1-208 1-216 (290)
11 PRK11172 dkgB 2,5-diketo-D-glu 100.0 5.3E-43 1.1E-47 289.2 17.3 176 15-210 1-184 (267)
12 PF00248 Aldo_ket_red: Aldo/ke 100.0 3.6E-43 7.8E-48 291.8 16.0 187 19-210 1-193 (283)
13 PRK14863 bifunctional regulato 100.0 7.3E-43 1.6E-47 291.5 15.5 185 14-210 2-197 (292)
14 PRK11565 dkgA 2,5-diketo-D-glu 100.0 1.5E-41 3.3E-46 281.5 17.1 184 1-208 1-190 (275)
15 COG4989 Predicted oxidoreducta 100.0 4.9E-42 1.1E-46 271.2 13.0 202 5-209 1-213 (298)
16 COG1453 Predicted oxidoreducta 100.0 1.5E-39 3.2E-44 269.6 14.9 197 5-208 1-206 (391)
17 KOG1576 Predicted oxidoreducta 100.0 2.8E-39 6.1E-44 257.5 14.5 206 4-211 21-236 (342)
18 KOG3023 Glutamate-cysteine lig 98.3 1.2E-06 2.6E-11 69.9 5.4 67 135-202 155-224 (285)
19 PRK10550 tRNA-dihydrouridine s 90.7 7 0.00015 33.1 12.0 132 36-178 73-223 (312)
20 COG1748 LYS9 Saccharopine dehy 89.7 2.1 4.5E-05 37.4 8.1 82 37-132 78-159 (389)
21 PRK13958 N-(5'-phosphoribosyl) 88.9 1.5 3.3E-05 34.8 6.3 66 113-180 17-83 (207)
22 PRK01222 N-(5'-phosphoribosyl) 85.1 2.5 5.4E-05 33.7 5.5 65 114-180 20-85 (210)
23 cd03319 L-Ala-DL-Glu_epimerase 85.0 22 0.00047 29.9 12.0 146 36-203 134-284 (316)
24 PF03102 NeuB: NeuB family; I 83.3 9.4 0.0002 31.2 8.2 109 35-162 53-183 (241)
25 PF00682 HMGL-like: HMGL-like 82.7 10 0.00023 30.3 8.4 150 35-198 11-178 (237)
26 PRK13796 GTPase YqeH; Provisio 82.6 31 0.00068 29.8 12.6 120 35-164 54-176 (365)
27 TIGR02026 BchE magnesium-proto 79.9 20 0.00043 32.4 9.9 67 130-198 317-390 (497)
28 COG0635 HemN Coproporphyrinoge 79.9 15 0.00032 32.5 8.9 61 99-161 200-276 (416)
29 PLN02389 biotin synthase 79.8 41 0.00089 29.4 11.5 101 35-150 116-227 (379)
30 COG0135 TrpF Phosphoribosylant 79.0 5.7 0.00012 31.7 5.4 64 114-181 19-84 (208)
31 PRK05414 urocanate hydratase; 77.1 8.4 0.00018 34.8 6.3 124 44-181 118-268 (556)
32 PF07021 MetW: Methionine bios 76.8 28 0.00061 27.4 8.6 143 42-204 5-165 (193)
33 TIGR01228 hutU urocanate hydra 76.7 8.4 0.00018 34.6 6.2 123 44-181 109-259 (545)
34 PRK10415 tRNA-dihydrouridine s 76.3 45 0.00098 28.3 10.6 134 36-179 75-224 (321)
35 PRK00208 thiG thiazole synthas 76.3 42 0.0009 27.6 13.5 79 98-178 71-150 (250)
36 PRK06294 coproporphyrinogen II 75.9 23 0.0005 30.6 8.9 61 99-161 166-243 (370)
37 COG1801 Uncharacterized conser 75.5 45 0.00098 27.6 11.2 108 19-132 4-115 (263)
38 cd04740 DHOD_1B_like Dihydroor 74.7 48 0.001 27.5 11.6 133 36-182 100-263 (296)
39 PRK07379 coproporphyrinogen II 74.7 24 0.00052 30.9 8.7 27 100-127 179-205 (400)
40 PRK09058 coproporphyrinogen II 73.7 30 0.00064 30.9 9.2 61 99-161 226-304 (449)
41 COG2069 CdhD CO dehydrogenase/ 73.5 25 0.00053 29.8 7.8 96 109-209 156-262 (403)
42 PF01175 Urocanase: Urocanase; 71.9 12 0.00025 33.9 6.0 125 42-181 106-258 (546)
43 PRK05660 HemN family oxidoredu 71.9 32 0.00069 29.9 8.7 26 100-126 171-196 (378)
44 TIGR00126 deoC deoxyribose-pho 71.2 22 0.00048 28.3 7.0 72 36-120 130-205 (211)
45 PRK08609 hypothetical protein; 71.2 29 0.00064 32.0 8.7 143 40-198 351-517 (570)
46 PRK09427 bifunctional indole-3 71.0 11 0.00024 33.8 5.7 65 113-181 273-338 (454)
47 PRK13803 bifunctional phosphor 70.1 13 0.00028 34.6 6.2 76 101-181 12-88 (610)
48 PRK08446 coproporphyrinogen II 70.1 70 0.0015 27.4 10.5 60 100-161 162-231 (350)
49 PLN02363 phosphoribosylanthran 70.1 14 0.0003 30.4 5.8 74 101-180 56-130 (256)
50 cd07948 DRE_TIM_HCS Saccharomy 69.8 61 0.0013 26.7 11.2 25 35-59 19-43 (262)
51 COG0502 BioB Biotin synthase a 69.4 9.4 0.0002 32.7 4.7 133 36-187 85-235 (335)
52 PRK05283 deoxyribose-phosphate 69.4 46 0.001 27.5 8.6 79 36-122 144-227 (257)
53 cd07943 DRE_TIM_HOA 4-hydroxy- 69.3 61 0.0013 26.5 14.4 117 34-169 18-148 (263)
54 TIGR02370 pyl_corrinoid methyl 69.1 40 0.00087 26.4 8.1 147 36-198 10-162 (197)
55 PRK07094 biotin synthase; Prov 68.0 35 0.00076 28.7 8.1 116 36-170 71-203 (323)
56 TIGR00737 nifR3_yhdG putative 67.8 74 0.0016 26.8 11.5 134 36-179 73-222 (319)
57 COG0042 tRNA-dihydrouridine sy 67.8 63 0.0014 27.5 9.5 133 36-178 77-227 (323)
58 COG4464 CapC Capsular polysacc 66.9 54 0.0012 26.5 8.1 123 34-157 16-165 (254)
59 cd03174 DRE_TIM_metallolyase D 66.0 69 0.0015 25.8 13.1 27 35-61 16-42 (265)
60 cd03174 DRE_TIM_metallolyase D 65.4 30 0.00064 28.0 6.9 82 100-183 16-98 (265)
61 cd02070 corrinoid_protein_B12- 65.3 47 0.001 26.0 7.8 147 36-198 9-160 (201)
62 COG1751 Uncharacterized conser 64.8 30 0.00066 26.3 6.0 73 36-119 12-85 (186)
63 COG1140 NarY Nitrate reductase 64.8 2.9 6.3E-05 36.3 0.8 53 148-200 263-317 (513)
64 cd07944 DRE_TIM_HOA_like 4-hyd 64.7 79 0.0017 26.0 13.6 25 35-59 17-41 (266)
65 PRK13347 coproporphyrinogen II 64.5 41 0.00089 30.0 8.1 60 100-161 216-291 (453)
66 PRK00730 rnpA ribonuclease P; 64.2 45 0.00099 24.8 6.9 63 78-148 46-110 (138)
67 PRK05628 coproporphyrinogen II 64.1 66 0.0014 27.8 9.1 27 100-127 172-198 (375)
68 cd00739 DHPS DHPS subgroup of 63.6 47 0.001 27.3 7.7 99 100-204 21-126 (257)
69 PF01207 Dus: Dihydrouridine s 63.5 21 0.00046 30.1 5.8 133 36-178 64-212 (309)
70 COG2987 HutU Urocanate hydrata 63.0 21 0.00046 31.9 5.7 107 64-181 148-268 (561)
71 COG3215 PilZ Tfp pilus assembl 62.7 39 0.00085 23.8 5.9 82 36-119 18-111 (117)
72 PRK07945 hypothetical protein; 62.2 1E+02 0.0022 26.4 11.4 146 37-198 110-283 (335)
73 COG1121 ZnuC ABC-type Mn/Zn tr 62.1 60 0.0013 26.8 7.9 67 101-170 113-208 (254)
74 cd00740 MeTr MeTr subgroup of 61.2 90 0.002 25.5 9.3 98 100-203 23-124 (252)
75 PRK15108 biotin synthase; Prov 61.1 1.1E+02 0.0023 26.3 10.5 105 35-153 76-188 (345)
76 cd00405 PRAI Phosphoribosylant 60.7 44 0.00096 26.1 6.9 40 121-164 74-113 (203)
77 PRK09061 D-glutamate deacylase 60.0 1.1E+02 0.0023 27.9 10.0 109 40-157 171-283 (509)
78 PRK08208 coproporphyrinogen II 59.3 68 0.0015 28.4 8.5 61 99-161 204-275 (430)
79 PRK08195 4-hyroxy-2-oxovalerat 58.9 1.2E+02 0.0025 26.1 15.2 24 35-58 22-45 (337)
80 PRK11840 bifunctional sulfur c 58.3 1.2E+02 0.0026 26.0 11.0 74 98-172 145-219 (326)
81 cd02801 DUS_like_FMN Dihydrour 57.5 93 0.002 24.5 9.0 137 36-183 65-217 (231)
82 PF00697 PRAI: N-(5'phosphorib 57.2 10 0.00023 29.7 2.7 67 112-182 14-81 (197)
83 TIGR03822 AblA_like_2 lysine-2 56.9 1.2E+02 0.0026 25.7 12.4 122 36-169 120-252 (321)
84 TIGR03597 GTPase_YqeH ribosome 56.5 1.2E+02 0.0025 26.2 9.3 124 35-168 48-175 (360)
85 PRK07259 dihydroorotate dehydr 56.4 1.2E+02 0.0025 25.3 10.2 135 36-182 102-266 (301)
86 COG0218 Predicted GTPase [Gene 56.1 1E+02 0.0022 24.5 8.4 100 38-148 91-198 (200)
87 PRK08599 coproporphyrinogen II 55.9 1E+02 0.0022 26.6 8.9 59 100-160 164-239 (377)
88 TIGR00538 hemN oxygen-independ 55.8 73 0.0016 28.4 8.2 60 100-161 215-290 (455)
89 PRK06582 coproporphyrinogen II 55.5 94 0.002 27.2 8.6 61 99-161 173-250 (390)
90 PRK00164 moaA molybdenum cofac 55.5 1.3E+02 0.0027 25.4 11.8 133 35-184 49-199 (331)
91 KOG0059 Lipid exporter ABCA1 a 55.4 84 0.0018 30.7 9.0 70 99-170 669-767 (885)
92 cd06543 GH18_PF-ChiA-like PF-C 55.3 1.3E+02 0.0027 25.3 12.0 182 13-207 66-262 (294)
93 COG3623 SgaU Putative L-xylulo 55.0 17 0.00037 29.6 3.5 47 12-59 65-117 (287)
94 PRK05799 coproporphyrinogen II 54.4 1.2E+02 0.0026 26.1 9.0 26 100-126 163-188 (374)
95 CHL00162 thiG thiamin biosynth 54.2 1.1E+02 0.0025 25.2 8.2 71 99-170 80-157 (267)
96 PRK06256 biotin synthase; Vali 53.6 1.4E+02 0.003 25.3 10.4 119 35-168 91-222 (336)
97 PF07555 NAGidase: beta-N-acet 53.6 19 0.00041 30.5 3.8 99 31-158 8-112 (306)
98 cd00423 Pterin_binding Pterin 53.4 1E+02 0.0022 25.2 8.1 98 100-203 21-125 (258)
99 PRK09249 coproporphyrinogen II 53.3 95 0.0021 27.7 8.5 61 99-161 214-290 (453)
100 PF05049 IIGP: Interferon-indu 53.0 33 0.00072 29.9 5.3 82 49-132 109-202 (376)
101 PF01904 DUF72: Protein of unk 51.6 1E+02 0.0023 24.7 7.7 123 44-170 12-140 (230)
102 PRK12928 lipoyl synthase; Prov 50.9 92 0.002 26.1 7.5 46 132-178 184-238 (290)
103 cd03316 MR_like Mandelate race 50.9 1.6E+02 0.0034 25.1 12.8 149 36-202 139-295 (357)
104 COG2089 SpsE Sialic acid synth 50.4 1.6E+02 0.0036 25.3 10.8 116 35-167 87-222 (347)
105 PF07302 AroM: AroM protein; 50.0 1.4E+02 0.0029 24.1 12.5 152 36-198 11-174 (221)
106 cd04728 ThiG Thiazole synthase 49.6 1.5E+02 0.0032 24.4 10.9 99 98-198 71-173 (248)
107 COG2355 Zn-dependent dipeptida 48.5 1.5E+02 0.0034 25.2 8.4 107 38-158 149-260 (313)
108 TIGR00742 yjbN tRNA dihydrouri 47.7 1.7E+02 0.0038 24.8 11.3 133 36-178 65-222 (318)
109 PRK00507 deoxyribose-phosphate 47.3 96 0.0021 24.9 6.8 76 35-120 133-209 (221)
110 cd07937 DRE_TIM_PC_TC_5S Pyruv 47.0 1.6E+02 0.0036 24.2 14.7 126 34-169 17-156 (275)
111 cd00466 DHQase_II Dehydroquina 46.4 76 0.0016 23.7 5.6 80 99-185 23-104 (140)
112 TIGR00973 leuA_bact 2-isopropy 46.0 2E+02 0.0042 26.2 9.3 25 35-59 20-44 (494)
113 COG2040 MHT1 Homocysteine/sele 45.8 1.8E+02 0.004 24.5 10.2 163 36-204 41-239 (300)
114 PRK13015 3-dehydroquinate dehy 45.7 97 0.0021 23.3 6.1 79 99-184 25-105 (146)
115 PRK08508 biotin synthase; Prov 45.6 1.7E+02 0.0038 24.1 10.1 22 35-56 40-61 (279)
116 TIGR01496 DHPS dihydropteroate 45.3 1.7E+02 0.0037 24.0 9.0 96 100-203 20-123 (257)
117 TIGR00689 rpiB_lacA_lacB sugar 45.2 1.3E+02 0.0028 22.5 8.4 89 100-198 7-96 (144)
118 TIGR03217 4OH_2_O_val_ald 4-hy 45.0 2E+02 0.0043 24.6 15.2 24 35-58 21-44 (333)
119 PRK12558 glutamyl-tRNA synthet 44.3 84 0.0018 28.1 6.6 54 99-158 47-100 (445)
120 TIGR00433 bioB biotin syntheta 44.1 1.3E+02 0.0028 24.7 7.5 119 36-169 63-194 (296)
121 COG2022 ThiG Uncharacterized e 43.5 1.3E+02 0.0028 24.7 6.8 71 99-170 79-150 (262)
122 cd02803 OYE_like_FMN_family Ol 43.4 2E+02 0.0043 24.1 12.6 95 79-179 206-311 (327)
123 PF01118 Semialdhyde_dh: Semia 43.3 35 0.00077 24.2 3.5 27 36-62 75-101 (121)
124 KOG3085 Predicted hydrolase (H 43.2 57 0.0012 26.6 4.9 73 135-209 115-191 (237)
125 TIGR00190 thiC thiamine biosyn 43.1 1.1E+02 0.0024 27.0 6.8 135 36-201 75-219 (423)
126 TIGR01278 DPOR_BchB light-inde 42.2 2.4E+02 0.0051 25.7 9.3 100 66-177 69-193 (511)
127 KOG0259 Tyrosine aminotransfer 42.0 2.5E+02 0.0054 24.9 12.9 49 35-88 78-135 (447)
128 KOG1892 Actin filament-binding 41.4 8.5 0.00018 37.5 -0.1 33 102-134 6-38 (1629)
129 cd02810 DHOD_DHPD_FMN Dihydroo 40.9 2E+02 0.0044 23.6 11.0 135 36-183 109-276 (289)
130 cd00959 DeoC 2-deoxyribose-5-p 40.9 1.2E+02 0.0026 23.7 6.4 70 36-118 129-202 (203)
131 PRK13352 thiamine biosynthesis 40.0 1.3E+02 0.0029 26.6 6.9 138 36-201 75-222 (431)
132 TIGR01428 HAD_type_II 2-haloal 39.6 69 0.0015 24.5 4.9 64 105-170 61-128 (198)
133 COG1131 CcmA ABC-type multidru 38.5 2.2E+02 0.0048 23.7 8.0 65 103-170 139-206 (293)
134 PF01890 CbiG_C: Cobalamin syn 38.3 71 0.0015 22.9 4.4 63 99-168 11-73 (121)
135 PF00809 Pterin_bind: Pterin b 38.2 1.1E+02 0.0023 24.2 5.8 92 106-203 19-121 (210)
136 PRK05395 3-dehydroquinate dehy 38.1 1E+02 0.0023 23.1 5.2 80 99-185 25-106 (146)
137 cd00405 PRAI Phosphoribosylant 38.0 89 0.0019 24.3 5.3 66 114-181 16-82 (203)
138 PRK11815 tRNA-dihydrouridine s 37.9 2.6E+02 0.0055 23.9 10.5 133 36-178 75-232 (333)
139 COG3172 NadR Predicted ATPase/ 37.5 1.5E+02 0.0033 23.0 6.1 104 42-149 69-185 (187)
140 cd04731 HisF The cyclase subun 37.2 2.1E+02 0.0046 22.8 12.2 139 46-198 88-243 (243)
141 COG0274 DeoC Deoxyribose-phosp 37.1 2.3E+02 0.0049 23.0 7.7 75 36-120 138-213 (228)
142 TIGR02090 LEU1_arch isopropylm 36.6 2.8E+02 0.0061 23.9 11.3 26 34-59 18-43 (363)
143 PRK14332 (dimethylallyl)adenos 36.4 2.3E+02 0.005 25.3 8.2 133 35-182 183-342 (449)
144 TIGR00089 RNA modification enz 36.4 3E+02 0.0065 24.2 9.4 47 130-176 268-323 (429)
145 TIGR03699 mena_SCO4550 menaqui 36.3 2.7E+02 0.0058 23.6 9.1 120 35-166 72-214 (340)
146 TIGR01088 aroQ 3-dehydroquinat 36.1 1.3E+02 0.0027 22.5 5.4 80 99-185 23-104 (141)
147 cd00959 DeoC 2-deoxyribose-5-p 34.7 2.2E+02 0.0048 22.2 9.1 134 35-182 14-156 (203)
148 cd08557 PI-PLCc_bacteria_like 34.7 1.1E+02 0.0023 24.7 5.5 20 43-62 42-61 (271)
149 cd01297 D-aminoacylase D-amino 34.5 3.1E+02 0.0068 23.9 11.1 123 38-170 167-298 (415)
150 COG4555 NatA ABC-type Na+ tran 34.4 2E+02 0.0042 23.3 6.5 49 120-170 151-202 (245)
151 PF04481 DUF561: Protein of un 34.4 1.9E+02 0.0042 23.4 6.5 102 36-149 25-145 (242)
152 TIGR00126 deoC deoxyribose-pho 34.3 2.4E+02 0.0052 22.5 10.1 136 33-182 13-157 (211)
153 PRK04820 rnpA ribonuclease P; 34.3 1.6E+02 0.0035 22.0 5.8 31 81-118 87-117 (145)
154 PRK05406 LamB/YcsF family prot 34.2 1.8E+02 0.0039 23.9 6.5 79 21-116 13-95 (246)
155 cd02930 DCR_FMN 2,4-dienoyl-Co 34.1 3E+02 0.0065 23.5 13.0 98 79-179 202-306 (353)
156 PLN02775 Probable dihydrodipic 34.1 2.8E+02 0.0062 23.3 7.9 70 109-182 68-138 (286)
157 PLN02428 lipoic acid synthase 34.0 3.1E+02 0.0068 23.7 8.6 118 35-170 130-270 (349)
158 PRK05571 ribose-5-phosphate is 33.9 2E+02 0.0044 21.5 8.8 90 100-198 9-99 (148)
159 PRK08599 coproporphyrinogen II 33.6 3.1E+02 0.0067 23.6 8.4 64 107-170 100-175 (377)
160 PF00072 Response_reg: Respons 33.5 1.2E+02 0.0025 20.2 4.8 60 114-176 37-98 (112)
161 cd07945 DRE_TIM_CMS Leptospira 33.5 2.8E+02 0.0061 23.0 9.0 68 38-116 115-189 (280)
162 cd08620 PI-PLCXDc_like_1 Catal 33.2 2.1E+02 0.0046 23.9 7.0 18 44-61 36-53 (281)
163 PF02525 Flavodoxin_2: Flavodo 33.2 1.4E+02 0.0031 22.9 5.7 101 36-146 93-196 (199)
164 PF05690 ThiG: Thiazole biosyn 33.2 1.4E+02 0.0029 24.5 5.5 132 18-170 9-143 (247)
165 cd08319 Death_RAIDD Death doma 32.8 33 0.00071 23.1 1.7 62 102-170 9-71 (83)
166 PRK12569 hypothetical protein; 32.6 2.1E+02 0.0045 23.5 6.6 81 21-116 14-98 (245)
167 PRK11267 biopolymer transport 32.5 1.4E+02 0.0031 21.8 5.3 54 100-158 81-134 (141)
168 cd01973 Nitrogenase_VFe_beta_l 32.4 3.3E+02 0.0072 24.4 8.5 111 57-178 64-194 (454)
169 PF01220 DHquinase_II: Dehydro 32.2 1.2E+02 0.0026 22.6 4.7 80 99-185 24-105 (140)
170 PRK08392 hypothetical protein; 32.2 2.5E+02 0.0054 22.0 9.3 104 39-156 15-123 (215)
171 PRK14338 (dimethylallyl)adenos 32.0 3.7E+02 0.0081 24.0 10.3 137 35-182 184-346 (459)
172 PRK03031 rnpA ribonuclease P; 31.9 1.9E+02 0.0042 20.6 6.9 64 78-148 47-114 (122)
173 PRK03957 V-type ATP synthase s 31.6 1.8E+02 0.0038 20.1 6.6 66 136-201 30-96 (100)
174 cd08590 PI-PLCc_Rv2075c_like C 31.5 2E+02 0.0043 23.8 6.5 16 44-59 47-62 (267)
175 KOG2264 Exostosin EXT1L [Signa 31.5 1.2E+02 0.0026 28.2 5.4 57 63-133 631-689 (907)
176 PRK02399 hypothetical protein; 31.2 1.7E+02 0.0038 25.8 6.3 73 108-186 200-292 (406)
177 PRK11024 colicin uptake protei 31.1 1.4E+02 0.0031 21.9 5.1 53 100-157 85-137 (141)
178 smart00148 PLCXc Phospholipase 31.0 2.1E+02 0.0045 20.9 5.9 18 41-58 31-48 (135)
179 PRK14461 ribosomal RNA large s 30.7 2.3E+02 0.005 24.8 6.9 120 79-198 106-264 (371)
180 COG2256 MGS1 ATPase related to 30.7 3.9E+02 0.0085 23.8 8.5 106 42-161 37-143 (436)
181 cd00668 Ile_Leu_Val_MetRS_core 30.3 89 0.0019 26.2 4.4 49 102-153 81-131 (312)
182 cd02069 methionine_synthase_B1 30.2 2.8E+02 0.006 22.0 8.1 22 36-57 13-34 (213)
183 TIGR00381 cdhD CO dehydrogenas 30.2 3.4E+02 0.0074 23.9 7.8 100 103-209 128-251 (389)
184 cd01967 Nitrogenase_MoFe_alpha 29.6 3.7E+02 0.0081 23.2 9.0 104 59-176 67-190 (406)
185 TIGR03471 HpnJ hopanoid biosyn 29.5 4.1E+02 0.0089 23.7 10.0 65 132-198 319-390 (472)
186 PRK09240 thiH thiamine biosynt 29.4 3.8E+02 0.0081 23.2 11.5 100 35-150 104-216 (371)
187 PRK12613 galactose-6-phosphate 29.1 2.4E+02 0.0053 21.0 7.6 73 100-177 9-82 (141)
188 PRK13361 molybdenum cofactor b 29.0 3.5E+02 0.0077 22.8 13.5 133 34-183 44-194 (329)
189 PRK06015 keto-hydroxyglutarate 28.8 2.1E+02 0.0045 22.6 5.9 84 102-202 15-101 (201)
190 PRK10508 hypothetical protein; 28.7 94 0.002 26.5 4.3 41 100-145 286-326 (333)
191 COG0145 HyuA N-methylhydantoin 28.5 5.2E+02 0.011 24.6 9.6 99 34-134 135-246 (674)
192 COG2390 DeoR Transcriptional r 28.4 3.3E+02 0.0071 23.3 7.4 124 41-183 16-151 (321)
193 COG0419 SbcC ATPase involved i 27.9 1.4E+02 0.0031 29.2 5.8 58 108-167 827-889 (908)
194 PF00388 PI-PLC-X: Phosphatidy 27.7 43 0.00092 24.6 1.8 18 42-59 30-47 (146)
195 TIGR01182 eda Entner-Doudoroff 27.6 2.2E+02 0.0047 22.6 5.9 85 102-203 19-106 (204)
196 COG3392 Adenine-specific DNA m 27.6 3.7E+02 0.0081 22.6 8.5 117 54-186 152-312 (330)
197 PRK14865 rnpA ribonuclease P; 27.6 1.9E+02 0.0041 20.5 5.1 71 18-120 45-115 (116)
198 PRK05692 hydroxymethylglutaryl 27.6 1.6E+02 0.0036 24.5 5.4 69 100-170 23-91 (287)
199 PF10171 DUF2366: Uncharacteri 27.1 1.5E+02 0.0033 22.9 4.7 38 121-158 78-115 (173)
200 PRK04452 acetyl-CoA decarbonyl 27.1 4E+02 0.0086 22.8 8.0 93 111-208 83-185 (319)
201 PRK00499 rnpA ribonuclease P; 27.1 2.3E+02 0.0049 19.9 6.7 63 78-148 38-104 (114)
202 COG3877 Uncharacterized protei 27.0 2.3E+02 0.0051 20.1 6.8 43 100-151 69-111 (122)
203 PRK14895 gltX glutamyl-tRNA sy 27.0 3.9E+02 0.0084 24.5 8.0 58 99-166 49-109 (513)
204 PRK14466 ribosomal RNA large s 26.9 3.6E+02 0.0077 23.3 7.4 99 79-181 102-214 (345)
205 cd00814 MetRS_core catalytic c 26.8 1.1E+02 0.0024 25.8 4.3 47 102-151 68-114 (319)
206 cd03770 SR_TndX_transposase Se 26.8 1.3E+02 0.0028 21.9 4.2 51 106-156 54-105 (140)
207 cd02932 OYE_YqiM_FMN Old yello 26.6 4E+02 0.0086 22.6 12.4 101 73-179 213-320 (336)
208 PRK11865 pyruvate ferredoxin o 26.5 3.9E+02 0.0084 22.6 7.4 115 40-168 164-285 (299)
209 PF00682 HMGL-like: HMGL-like 26.4 2E+02 0.0044 22.7 5.7 64 100-169 11-74 (237)
210 PRK08621 galactose-6-phosphate 26.4 2.8E+02 0.006 20.7 7.9 73 100-176 9-82 (142)
211 PRK10997 yieM hypothetical pro 26.4 2.1E+02 0.0045 26.0 6.1 67 104-170 398-469 (487)
212 PF12728 HTH_17: Helix-turn-he 26.0 1.4E+02 0.0031 17.2 3.7 30 140-169 16-48 (51)
213 PF10007 DUF2250: Uncharacteri 25.7 91 0.002 21.4 3.0 50 105-157 8-57 (92)
214 PLN02229 alpha-galactosidase 25.7 82 0.0018 28.1 3.4 44 15-61 60-108 (427)
215 TIGR00238 KamA family protein. 25.7 4.2E+02 0.0091 22.5 11.8 121 37-170 144-276 (331)
216 PRK12410 glutamylglutaminyl-tR 25.6 3.7E+02 0.0079 24.1 7.5 54 99-158 44-97 (433)
217 PRK07418 acetolactate synthase 25.5 2.2E+02 0.0047 26.5 6.4 94 104-203 20-116 (616)
218 PRK00260 cysS cysteinyl-tRNA s 25.4 1.7E+02 0.0038 26.2 5.5 47 102-152 90-136 (463)
219 PRK07535 methyltetrahydrofolat 25.3 3.8E+02 0.0083 22.0 9.8 26 135-160 173-200 (261)
220 PRK14465 ribosomal RNA large s 25.3 4.4E+02 0.0096 22.7 8.1 90 80-169 105-207 (342)
221 PF01487 DHquinase_I: Type I 3 25.1 3.4E+02 0.0074 21.3 10.0 121 35-170 72-194 (224)
222 TIGR01120 rpiB ribose 5-phosph 25.0 3E+02 0.0064 20.5 8.6 75 100-176 8-83 (143)
223 TIGR00735 hisF imidazoleglycer 24.7 3.8E+02 0.0082 21.7 11.2 87 109-198 160-249 (254)
224 TIGR01118 lacA galactose-6-pho 24.6 3E+02 0.0065 20.5 7.7 74 100-177 9-83 (141)
225 cd00671 ArgRS_core catalytic c 24.6 1.7E+02 0.0036 23.0 4.8 46 102-152 67-112 (212)
226 PRK04390 rnpA ribonuclease P; 24.5 2.7E+02 0.0058 19.9 7.1 64 78-148 44-110 (120)
227 PF11372 DUF3173: Domain of un 24.4 44 0.00096 21.0 1.1 19 38-56 17-39 (59)
228 KOG0173 20S proteasome, regula 24.4 78 0.0017 26.0 2.8 24 30-53 178-201 (271)
229 COG0757 AroQ 3-dehydroquinate 24.3 3.1E+02 0.0067 20.5 6.0 93 99-198 24-122 (146)
230 PF09639 YjcQ: YjcQ protein; 24.2 58 0.0013 22.0 1.8 24 136-159 25-48 (88)
231 PRK07535 methyltetrahydrofolat 24.0 4.1E+02 0.0088 21.8 9.0 95 101-202 23-120 (261)
232 TIGR02932 vnfK_nitrog V-contai 24.0 5.2E+02 0.011 23.1 8.2 110 57-177 67-197 (457)
233 cd04734 OYE_like_3_FMN Old yel 23.8 4.6E+02 0.01 22.4 13.7 96 79-179 206-315 (343)
234 PRK14463 ribosomal RNA large s 23.8 3.3E+02 0.0071 23.5 6.7 71 98-170 129-204 (349)
235 COG1104 NifS Cysteine sulfinat 23.7 1.4E+02 0.0031 26.2 4.4 60 137-198 103-170 (386)
236 COG1809 (2R)-phospho-3-sulfola 23.6 4.1E+02 0.0088 21.7 7.5 88 35-128 57-151 (258)
237 cd00338 Ser_Recombinase Serine 23.5 1.7E+02 0.0036 20.7 4.3 51 106-157 51-102 (137)
238 PRK12581 oxaloacetate decarbox 23.4 5.6E+02 0.012 23.2 13.7 149 36-198 103-261 (468)
239 COG2200 Rtn c-di-GMP phosphodi 23.3 4E+02 0.0088 21.5 7.6 126 67-203 69-211 (256)
240 CHL00076 chlB photochlorophyll 23.1 5.8E+02 0.013 23.3 8.7 100 66-176 69-197 (513)
241 TIGR00539 hemN_rel putative ox 23.1 4.8E+02 0.01 22.3 7.9 63 108-170 101-175 (360)
242 PRK04820 rnpA ribonuclease P; 23.0 3.3E+02 0.0071 20.3 7.1 64 78-148 48-114 (145)
243 PRK01732 rnpA ribonuclease P; 22.7 2.8E+02 0.0062 19.6 5.4 31 80-117 83-113 (114)
244 PLN03233 putative glutamate-tR 22.6 4.8E+02 0.01 24.0 7.7 62 98-167 55-116 (523)
245 COG4152 ABC-type uncharacteriz 22.6 4.6E+02 0.01 21.9 8.4 70 99-170 101-199 (300)
246 PRK09485 mmuM homocysteine met 22.4 4.7E+02 0.01 21.9 16.0 94 36-129 44-162 (304)
247 TIGR00618 sbcc exonuclease Sbc 22.4 1.8E+02 0.0039 29.0 5.4 48 120-169 978-1028(1042)
248 PRK05339 PEP synthetase regula 22.4 4.6E+02 0.01 21.8 7.1 72 38-124 16-90 (269)
249 COG0647 NagD Predicted sugar p 22.3 4.6E+02 0.0099 21.8 8.8 104 38-157 27-155 (269)
250 cd07943 DRE_TIM_HOA 4-hydroxy- 22.3 4.1E+02 0.0088 21.6 6.8 97 100-198 19-124 (263)
251 cd02933 OYE_like_FMN Old yello 22.2 5E+02 0.011 22.2 13.1 94 83-179 220-314 (338)
252 PRK14325 (dimethylallyl)adenos 22.2 5.5E+02 0.012 22.7 9.5 47 130-176 278-333 (444)
253 COG3287 Uncharacterized conser 22.1 1.5E+02 0.0033 26.0 4.3 55 102-158 12-66 (379)
254 TIGR03569 NeuB_NnaB N-acetylne 22.1 5.1E+02 0.011 22.2 11.0 115 35-164 73-207 (329)
255 PRK14536 cysS cysteinyl-tRNA s 22.0 2.4E+02 0.0052 25.6 5.7 47 102-152 100-146 (490)
256 PF00465 Fe-ADH: Iron-containi 22.0 3.2E+02 0.007 23.3 6.4 92 60-167 5-96 (366)
257 PLN02808 alpha-galactosidase 22.0 89 0.0019 27.4 2.9 137 15-160 29-188 (386)
258 PRK12323 DNA polymerase III su 21.9 3.5E+02 0.0076 25.8 6.8 80 100-185 104-185 (700)
259 PRK07027 cobalamin biosynthesi 21.9 1.9E+02 0.0042 20.8 4.3 62 99-167 13-74 (126)
260 TIGR01862 N2-ase-Ialpha nitrog 21.8 4E+02 0.0086 23.7 7.1 103 59-175 97-220 (443)
261 cd04104 p47_IIGP_like p47 (47- 21.6 3.7E+02 0.0081 20.5 7.3 80 65-144 94-181 (197)
262 KOG1579 Homocysteine S-methylt 21.6 2.8E+02 0.0062 23.6 5.7 94 36-129 51-170 (317)
263 PRK09462 fur ferric uptake reg 21.6 1.3E+02 0.0029 22.1 3.5 27 132-158 49-75 (148)
264 PF08734 GYD: GYD domain; Int 21.4 2.7E+02 0.0058 18.8 7.4 66 103-168 19-90 (91)
265 cd00885 cinA Competence-damage 21.4 2.8E+02 0.0061 21.1 5.3 49 40-92 20-70 (170)
266 PRK11893 methionyl-tRNA synthe 21.4 1.5E+02 0.0032 26.6 4.4 48 102-152 69-116 (511)
267 PRK00002 aroB 3-dehydroquinate 21.2 5.2E+02 0.011 22.1 9.8 94 61-167 14-110 (358)
268 PF06792 UPF0261: Uncharacteri 21.2 3.2E+02 0.0069 24.2 6.1 56 109-170 200-269 (403)
269 TIGR03820 lys_2_3_AblA lysine- 21.2 5.9E+02 0.013 22.7 9.9 122 35-170 138-271 (417)
270 smart00729 Elp3 Elongator prot 21.1 3.5E+02 0.0077 20.0 7.0 38 133-170 133-175 (216)
271 PRK05588 histidinol-phosphatas 21.1 4.4E+02 0.0096 21.2 9.9 104 38-155 16-143 (255)
272 PRK07003 DNA polymerase III su 21.1 5.2E+02 0.011 25.3 7.8 80 101-186 100-181 (830)
273 PRK14457 ribosomal RNA large s 21.0 5.4E+02 0.012 22.1 9.5 91 79-170 100-202 (345)
274 PF00749 tRNA-synt_1c: tRNA sy 21.0 5.1E+02 0.011 21.9 7.8 62 98-167 45-107 (314)
275 PRK14340 (dimethylallyl)adenos 20.9 6E+02 0.013 22.6 10.1 128 35-176 178-332 (445)
276 COG2877 KdsA 3-deoxy-D-manno-o 20.9 2.3E+02 0.005 23.3 4.8 84 102-198 33-130 (279)
277 PRK09389 (R)-citramalate synth 20.9 6.3E+02 0.014 22.9 9.7 27 34-60 20-46 (488)
278 PF02426 MIase: Muconolactone 20.8 2E+02 0.0044 19.7 3.9 48 139-186 28-87 (91)
279 PRK13537 nodulation ABC transp 20.8 2.7E+02 0.0059 23.2 5.6 49 120-170 156-207 (306)
280 KOG0922 DEAH-box RNA helicase 20.7 1.4E+02 0.003 28.2 3.9 44 109-155 411-454 (674)
281 PRK11864 2-ketoisovalerate fer 20.7 5.2E+02 0.011 21.8 8.2 115 40-168 160-282 (300)
282 PRK09456 ?-D-glucose-1-phospha 20.6 3.9E+02 0.0084 20.3 6.1 66 135-201 86-156 (199)
283 cd07938 DRE_TIM_HMGL 3-hydroxy 20.5 4.9E+02 0.011 21.4 10.9 25 35-59 17-41 (274)
284 TIGR01430 aden_deam adenosine 20.3 5.1E+02 0.011 21.6 11.5 57 101-158 138-194 (324)
285 COG2109 BtuR ATP:corrinoid ade 20.3 4.4E+02 0.0096 20.9 8.6 41 103-143 105-150 (198)
286 PRK03995 hypothetical protein; 20.3 4.7E+02 0.01 21.7 6.7 82 16-120 181-264 (267)
287 TIGR00435 cysS cysteinyl-tRNA 20.2 2.7E+02 0.0058 25.0 5.7 47 102-152 88-134 (465)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=2.3e-52 Score=351.55 Aligned_cols=206 Identities=42% Similarity=0.631 Sum_probs=188.5
Q ss_pred ccceecCCCCcccCcceecccccCCcCCCCCChHHHHHHHHHHHHcCCCeeeCcCCcCCCchHHHHHHHHhCCC-CCCeE
Q 028264 5 VKRIKLGSQGLEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGM-RERVE 83 (211)
Q Consensus 5 m~~~~lg~~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~~e~~lg~~l~~~~-R~~~~ 83 (211)
|++|+||++|++||+||||||.+|+. ....+.+++.++|++|+++||||||||+.||.|.||+++|++|++.+ |++++
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~-~~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~~~Rd~vv 79 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGD-TDDEEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKERGRRDKVV 79 (316)
T ss_pred CCceecCCCCceecceeeeccccCCC-CCchhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhccCCCCeEE
Confidence 78999999999999999999999864 22335557788999999999999999999999999999999999954 89999
Q ss_pred EEeccCCcCCC-C-C-CCCCCHHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCccEEeccccc
Q 028264 84 LATKFGISFAD-G-G-KIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEAC 160 (211)
Q Consensus 84 i~tK~~~~~~~-~-~-~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~iGvs~~~ 160 (211)
|+||++..+.+ + . ..+.++++|+++++.||+|||+||||+|++|+||+.++.++++++|.+|+++|+||+||+||++
T Consensus 80 IaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p~~e~~~aL~~l~~~G~ir~iG~S~~~ 159 (316)
T COG0667 80 IATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETPIEETLEALDELVREGKIRYIGVSNYS 159 (316)
T ss_pred EEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCC
Confidence 99999877642 2 1 2567999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcc-CCeeEEccccCccccCchhhHHHHHHhh-cCchhhhhhhhhC
Q 028264 161 AATIRRAHAV-HPITAVQLEWSLWSRDVEAEIVPTCSDC-LGNLALELLRMVL 211 (211)
Q Consensus 161 ~~~l~~~~~~-~~~~~~q~~~~~~~~~~~~~l~~~~~~~-~~~i~~~~l~~~~ 211 (211)
++++.++++. .+++++|.+||+++|+.+..+++.|+++ +++++|+||+-++
T Consensus 160 ~~~i~~a~~~~~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~G~ 212 (316)
T COG0667 160 AEQIAEALAVAAPIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLASGL 212 (316)
T ss_pred HHHHHHHHHhcCCceeecccCccccccchhHHHHHHHHcCCeEEEecCccccc
Confidence 9999999999 6999999999999998777899999999 9999999998764
No 2
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=2.2e-50 Score=335.45 Aligned_cols=207 Identities=42% Similarity=0.643 Sum_probs=189.9
Q ss_pred cccceecCCCCcccCcceecccccCCcCCCCCChHHHHHHHHHHHHcCCCeeeCcCCcCCCchHHHHHHHHhC--CCCCC
Q 028264 4 TVKRIKLGSQGLEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKG--GMRER 81 (211)
Q Consensus 4 ~m~~~~lg~~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~~e~~lg~~l~~--~~R~~ 81 (211)
.|+++++|++|++||++|||||.+.. |+...+++++.++++.|+++|+||||||++||+|.||..+|+++++ .+|++
T Consensus 11 ~~~~~~lg~~gl~Vs~lglG~m~~~~-~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~~~~R~~ 89 (336)
T KOG1575|consen 11 GMLRRKLGNSGLKVSPLGLGCMGWTT-FGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKSRGWRRDK 89 (336)
T ss_pred cceeeeccCCCceecceeecceeeec-cccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHhcCCcCCc
Confidence 48999999999999999999974433 5555789999999999999999999999999999999999999999 66999
Q ss_pred eEEEeccCCcCCCCCCCCCCHHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCccEEecccccH
Q 028264 82 VELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACA 161 (211)
Q Consensus 82 ~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~iGvs~~~~ 161 (211)
++|+||++......+..+.++..+.+.++.|+++||++|||+|++||+|+..|+++++++|.+++++|+|++||+|++++
T Consensus 90 vviaTK~~~~~~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~piee~m~aL~~lve~Gki~yiGlSe~sa 169 (336)
T KOG1575|consen 90 VVIATKFGFDYGGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVPIEETMRALTDLVEQGKIRYWGLSEWSA 169 (336)
T ss_pred EEEEEEEeccCCCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCCHHHHHHHHHHHHhcCceEEEEeccCCH
Confidence 99999998766222456789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCC--eeEEccccCccccCchh-hHHHHHHhh-cCchhhhhhhhhC
Q 028264 162 ATIRRAHAVHP--ITAVQLEWSLWSRDVEA-EIVPTCSDC-LGNLALELLRMVL 211 (211)
Q Consensus 162 ~~l~~~~~~~~--~~~~q~~~~~~~~~~~~-~l~~~~~~~-~~~i~~~~l~~~~ 211 (211)
++|+++++..+ |.++|++||++.|.+++ ++++.|+++ |++++||||.-|+
T Consensus 170 ~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~ 223 (336)
T KOG1575|consen 170 EEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGL 223 (336)
T ss_pred HHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccce
Confidence 99999999866 99999999999999544 699999999 9999999998664
No 3
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=1.9e-49 Score=323.99 Aligned_cols=184 Identities=32% Similarity=0.419 Sum_probs=167.9
Q ss_pred ccceecCCCCcccCcceecccccCCcCCCCCChHHHHHHHHHHHHcCCCeeeCcCCcCCCchHHHHHHHHhC--CCCCCe
Q 028264 5 VKRIKLGSQGLEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKG--GMRERV 82 (211)
Q Consensus 5 m~~~~lg~~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~~e~~lg~~l~~--~~R~~~ 82 (211)
|.+.++ ++|.+||.+|||||++++ .+.+.+.+..|++.|||+||||..|| ||+.+|+++++ ++|+++
T Consensus 3 ~~~~~l-~~g~~iP~iGlGt~~~~~-------~~~~~~av~~Al~~Gyr~IDTA~~Yg---nE~~VG~aI~~s~v~Reel 71 (280)
T COG0656 3 KTKVTL-NNGVEIPAIGLGTWQIGD-------DEWAVRAVRAALELGYRLIDTAEIYG---NEEEVGEAIKESGVPREEL 71 (280)
T ss_pred Cceeec-CCCCcccCcceEeeecCC-------chhHHHHHHHHHHhCcceEecHhHhc---CHHHHHHHHHhcCCCHHHe
Confidence 566788 668889999999999843 22288999999999999999999999 99999999988 789999
Q ss_pred EEEeccCCcCCCCCCCCCCHHHHHHHHHHHhhHcCCCccceEeecCCCCC--CCHHHHHHHHHHHHHcCCccEEeccccc
Q 028264 83 ELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK--IPIEVTIGELKKLVEEGKIKYIGLSEAC 160 (211)
Q Consensus 83 ~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~--~~~~~~~~~l~~l~~~G~i~~iGvs~~~ 160 (211)
||+||+|... .+++.+.+++++||++||+||+|||++|||.+. ..++|+|++|++++++|+||+||||||+
T Consensus 72 FittKvw~~~-------~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~ir~IGVSNF~ 144 (280)
T COG0656 72 FITTKVWPSD-------LGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGLIRAIGVSNFG 144 (280)
T ss_pred EEEeecCCcc-------CCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCCccEEEeeCCC
Confidence 9999998765 678999999999999999999999999999763 3378999999999999999999999999
Q ss_pred HHHHHHHhcc--CCeeEEccccCccccCchhhHHHHHHhh-cCchhhhhhh
Q 028264 161 AATIRRAHAV--HPITAVQLEWSLWSRDVEAEIVPTCSDC-LGNLALELLR 208 (211)
Q Consensus 161 ~~~l~~~~~~--~~~~~~q~~~~~~~~~~~~~l~~~~~~~-~~~i~~~~l~ 208 (211)
.++++++++. ..|+++|++|||+.++. +++++|++| |.+++||||.
T Consensus 145 ~~~L~~l~~~~~~~p~~NQIe~hp~~~q~--el~~~~~~~gI~v~AysPL~ 193 (280)
T COG0656 145 VEHLEELLSLAKVKPAVNQIEYHPYLRQP--ELLPFCQRHGIAVEAYSPLA 193 (280)
T ss_pred HHHHHHHHHhcCCCCceEEEEeccCCCcH--HHHHHHHHcCCEEEEECCcc
Confidence 9999999987 67999999999999994 599999999 9999999997
No 4
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=5e-48 Score=326.32 Aligned_cols=202 Identities=25% Similarity=0.364 Sum_probs=177.1
Q ss_pred ceecCCCCcccCcceecccccCCcCCCCCChHHHHHHHHHHHHcCCCeeeCcCCcCCCchHHHHHHHHhC--CCCCCeEE
Q 028264 7 RIKLGSQGLEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKG--GMRERVEL 84 (211)
Q Consensus 7 ~~~lg~~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~~e~~lg~~l~~--~~R~~~~i 84 (211)
||+||++|++||+||||||.+ +|...+.+++.++++.|+++|||+||||+.||.|.||+.+|++|++ .+|++++|
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~---~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~~~R~~~~i 77 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVT---FGGQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKKGWRRSSYVI 77 (317)
T ss_pred CcccCCCCCeecceeecCCcc---CCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhcCCCcccEEE
Confidence 589999999999999999975 3434577889999999999999999999999999999999999985 36999999
Q ss_pred EeccCCcCCCCCCCCCCHHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCccEEecccccHHHH
Q 028264 85 ATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATI 164 (211)
Q Consensus 85 ~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~iGvs~~~~~~l 164 (211)
+||+++........+.+++.++++++.||++||+||+|+|++|+|++..+++++|++|++|+++|+||+||+|||+++++
T Consensus 78 aTK~~~~~~~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~~~e~~~aL~~l~~~G~ir~iGvSn~~~~~l 157 (317)
T TIGR01293 78 TTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTPMEETVRAMTYVINQGMAMYWGTSRWSSMEI 157 (317)
T ss_pred EeeeccCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCCHHHH
Confidence 99986421100113457999999999999999999999999999998888999999999999999999999999999988
Q ss_pred HHHhcc------CCeeEEccccCccccCc-hhhHHHHHHhh-cCchhhhhhhhhC
Q 028264 165 RRAHAV------HPITAVQLEWSLWSRDV-EAEIVPTCSDC-LGNLALELLRMVL 211 (211)
Q Consensus 165 ~~~~~~------~~~~~~q~~~~~~~~~~-~~~l~~~~~~~-~~~i~~~~l~~~~ 211 (211)
+++... .+|+++|++||++++.. ++.++++|+++ +++++|+||+.++
T Consensus 158 ~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~ 212 (317)
T TIGR01293 158 MEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGL 212 (317)
T ss_pred HHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccc
Confidence 776543 57899999999999874 66899999999 9999999998653
No 5
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=1.3e-47 Score=327.19 Aligned_cols=206 Identities=28% Similarity=0.457 Sum_probs=178.7
Q ss_pred CcccceecCCCCcccCcceecccccCCcCCCCCChHHHHHHHHHHHHcCCCeeeCcCCcCC--CchHHHHHHHHhC---C
Q 028264 3 GTVKRIKLGSQGLEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGP--YTNEILVGKALKG---G 77 (211)
Q Consensus 3 ~~m~~~~lg~~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~--g~~e~~lg~~l~~---~ 77 (211)
..|++|+||++|++||.||||||+. +|...+.+++.++|+.|+++|||+||||+.||+ |.+|+.+|++|+. .
T Consensus 11 ~~m~~r~lg~tg~~vs~lglG~~~~---~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~~~ 87 (346)
T PRK09912 11 GQMQYRYCGKSGLRLPALSLGLWHN---FGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAA 87 (346)
T ss_pred CCcceeecCCCCcccccccccCccc---cCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhcccC
Confidence 3599999999999999999999973 343345677899999999999999999999995 8999999999986 2
Q ss_pred CCCCeEEEeccCCc-CCCCCCCCCCHHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCccEEec
Q 028264 78 MRERVELATKFGIS-FADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGL 156 (211)
Q Consensus 78 ~R~~~~i~tK~~~~-~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~iGv 156 (211)
+|++++|+||++.. ++.......+++.++++++.||++||+||+|+|++|+|++..+.+++|++|++|+++|+|++||+
T Consensus 88 ~Rd~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~GkIr~iGv 167 (346)
T PRK09912 88 YRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGI 167 (346)
T ss_pred CCCeEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEEe
Confidence 59999999998743 11111124679999999999999999999999999999988889999999999999999999999
Q ss_pred ccccHHHHHHHhcc-----CCeeEEccccCccccCch-hhHHHHHHhh-cCchhhhhhhhhC
Q 028264 157 SEACAATIRRAHAV-----HPITAVQLEWSLWSRDVE-AEIVPTCSDC-LGNLALELLRMVL 211 (211)
Q Consensus 157 s~~~~~~l~~~~~~-----~~~~~~q~~~~~~~~~~~-~~l~~~~~~~-~~~i~~~~l~~~~ 211 (211)
|||++++++++.+. .+++++|++||++++..+ .++++.|+++ |++++|+||..++
T Consensus 168 Sn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~ 229 (346)
T PRK09912 168 SSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGL 229 (346)
T ss_pred cCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCcc
Confidence 99999988766542 478999999999998754 4799999999 9999999997653
No 6
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=2e-47 Score=312.53 Aligned_cols=186 Identities=27% Similarity=0.390 Sum_probs=170.8
Q ss_pred CCCcccceecCCCCcccCcceecccccCCcCCCCCChHHHHHHHHHHHHcCCCeeeCcCCcCCCchHHHHHHHHhC----
Q 028264 1 MAGTVKRIKLGSQGLEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKG---- 76 (211)
Q Consensus 1 ~~~~m~~~~lg~~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~~e~~lg~~l~~---- 76 (211)
|+... +.+| ++|.++|.+|||||+. ++.++.++++.|++.||||||||..|+ ||+.+|+++++
T Consensus 1 M~~~~-~~~L-n~G~~mP~iGlGTw~~--------~~~~~~~aV~~Al~~GYRHIDtA~~Y~---NE~evG~aik~~i~~ 67 (300)
T KOG1577|consen 1 MSSKT-TVKL-NNGFKMPIIGLGTWQS--------PPGQVAEAVKAAIKAGYRHIDTAHVYG---NEKEVGEAIKELLAE 67 (300)
T ss_pred CCccc-eEec-cCCCccceeeeEeccc--------ChhhHHHHHHHHHHhCcceeechhhhC---ChHHHHHHHHHHhhh
Confidence 55544 7899 8999999999999984 568899999999999999999999999 99999999996
Q ss_pred --CCCCCeEEEeccCCcCCCCCCCCCCHHHHHHHHHHHhhHcCCCccceEeecCCCCC----------------CCHHHH
Q 028264 77 --GMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK----------------IPIEVT 138 (211)
Q Consensus 77 --~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~----------------~~~~~~ 138 (211)
++|+++||+||+|... ..++.++.++++||++||+||+|+|++|||-.. .+..++
T Consensus 68 ~~v~RediFiTSKlw~~~-------~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~t 140 (300)
T KOG1577|consen 68 GGVKREDIFITSKLWPTD-------HAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIET 140 (300)
T ss_pred CCcchhhheeeeccCccc-------cChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHHH
Confidence 6899999999999754 579999999999999999999999999999443 346789
Q ss_pred HHHHHHHHHcCCccEEecccccHHHHHHHhcc--CCeeEEccccCccccCchhhHHHHHHhh-cCchhhhhhh
Q 028264 139 IGELKKLVEEGKIKYIGLSEACAATIRRAHAV--HPITAVQLEWSLWSRDVEAEIVPTCSDC-LGNLALELLR 208 (211)
Q Consensus 139 ~~~l~~l~~~G~i~~iGvs~~~~~~l~~~~~~--~~~~~~q~~~~~~~~~~~~~l~~~~~~~-~~~i~~~~l~ 208 (211)
|++|+++++.|++|+||||||+..+++++++. ++|.++|++|||+.++ .+++++|+++ |.+.|||||.
T Consensus 141 W~amE~~~~~Gl~rsIGVSNF~~~~le~ll~~~ki~P~vnQvE~HP~~~Q--~~L~~fCk~~~I~v~AYSpLg 211 (300)
T KOG1577|consen 141 WKAMEKLVDEGLVRSIGVSNFNIKQLEELLNLAKIKPAVNQVECHPYLQQ--KKLVEFCKSKGIVVTAYSPLG 211 (300)
T ss_pred HHHHHHHHHcCCceEeeeecCCHHHHHHHHhcCCCCCccceeeccCCcCh--HHHHHHHhhCCcEEEEecCCC
Confidence 99999999999999999999999999999988 8999999999999888 6899999999 9999999985
No 7
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=5.2e-46 Score=317.48 Aligned_cols=202 Identities=28% Similarity=0.384 Sum_probs=175.0
Q ss_pred ccceecCCCCcccCcceecccccCCcCCCCCChHHHHHHHHHHHHcCCCeeeCcCCcC-------CCchHHHHHHHHhC-
Q 028264 5 VKRIKLGSQGLEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYG-------PYTNEILVGKALKG- 76 (211)
Q Consensus 5 m~~~~lg~~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg-------~g~~e~~lg~~l~~- 76 (211)
|++|+||++|++||.+|||||++|+ ..+.+++.++++.|+++||||||||+.|| .|.+|+.+|++|+.
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~----~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~ 76 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGE----QNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKR 76 (346)
T ss_pred CCceecCCCCCccccEeEeccccCC----CCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhc
Confidence 7899999999999999999999853 34678899999999999999999999998 48899999999985
Q ss_pred CCCCCeEEEeccCCcCCC-C----CCCCCCHHHHHHHHHHHhhHcCCCccceEeecCCCC-----------------CCC
Q 028264 77 GMRERVELATKFGISFAD-G----GKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDT-----------------KIP 134 (211)
Q Consensus 77 ~~R~~~~i~tK~~~~~~~-~----~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~-----------------~~~ 134 (211)
.+|++++|+||++..... + ...+.+++.+++++++||++||+||+|+|++|||++ ..+
T Consensus 77 ~~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~ 156 (346)
T PRK10625 77 GSREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVS 156 (346)
T ss_pred CCcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccccccCCCC
Confidence 459999999998632110 0 012468999999999999999999999999999965 246
Q ss_pred HHHHHHHHHHHHHcCCccEEecccccHHHHHHHhcc------CCeeEEccccCccccCchhhHHHHHHhh-cCchhhhhh
Q 028264 135 IEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV------HPITAVQLEWSLWSRDVEAEIVPTCSDC-LGNLALELL 207 (211)
Q Consensus 135 ~~~~~~~l~~l~~~G~i~~iGvs~~~~~~l~~~~~~------~~~~~~q~~~~~~~~~~~~~l~~~~~~~-~~~i~~~~l 207 (211)
++++|++|++|+++|+|++||+|||+..++++++.. ..+.++|++||++++..+.+++++|+++ |++++|+||
T Consensus 157 ~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via~spL 236 (346)
T PRK10625 157 LLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCL 236 (346)
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEEeccc
Confidence 789999999999999999999999999988776542 3588999999999998767899999999 999999999
Q ss_pred hhh
Q 028264 208 RMV 210 (211)
Q Consensus 208 ~~~ 210 (211)
..+
T Consensus 237 ~~G 239 (346)
T PRK10625 237 AFG 239 (346)
T ss_pred cCe
Confidence 754
No 8
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=9.7e-46 Score=307.56 Aligned_cols=198 Identities=39% Similarity=0.567 Sum_probs=180.6
Q ss_pred ceecCCCCcccCcceecccccCCcCCCCCChHHHHHHHHHHHHcCCCeeeCcCCcCCCchHHHHHHHHhCCC-CCCeEEE
Q 028264 7 RIKLGSQGLEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGM-RERVELA 85 (211)
Q Consensus 7 ~~~lg~~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~~e~~lg~~l~~~~-R~~~~i~ 85 (211)
+|+||++|++||.+|||||.++..+ .+.+++.++++.|++.|||+||||+.||+|.+|+.+|++|+..+ |++++|+
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~~---~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~~~R~~~~i~ 77 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGGY---VDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKERGPREEVFIA 77 (285)
T ss_pred CcccCCCCceecCcceeccccCCCC---CCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhccCCcCcEEEE
Confidence 5889999999999999999986544 46789999999999999999999999999999999999999855 9999999
Q ss_pred eccCCcCCCCCCCCCCHHHHHHHHHHHhhHcCCCccceEeecCCCCCCC-HHHHHHHHHHHHHcCCccEEecccccHHHH
Q 028264 86 TKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIP-IEVTIGELKKLVEEGKIKYIGLSEACAATI 164 (211)
Q Consensus 86 tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~-~~~~~~~l~~l~~~G~i~~iGvs~~~~~~l 164 (211)
||++..... ..+.+++.+++++++||++||++|+|+|++|+|+...+ ..++|++|++++++|+||+||+||++++.+
T Consensus 78 tK~~~~~~~--~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l 155 (285)
T cd06660 78 TKVGPRPGD--GRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKIRAIGVSNFSAEQL 155 (285)
T ss_pred eeecCCCCC--CCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCccEEEeeCCCHHHH
Confidence 999865421 13468999999999999999999999999999987766 899999999999999999999999999999
Q ss_pred HHHhcc--CCeeEEccccCccccCchhhHHHHHHhh-cCchhhhhhhh
Q 028264 165 RRAHAV--HPITAVQLEWSLWSRDVEAEIVPTCSDC-LGNLALELLRM 209 (211)
Q Consensus 165 ~~~~~~--~~~~~~q~~~~~~~~~~~~~l~~~~~~~-~~~i~~~~l~~ 209 (211)
.++++. .+|+++|++||++++..+.+++++|+++ |++++|+||.-
T Consensus 156 ~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~ 203 (285)
T cd06660 156 EEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAG 203 (285)
T ss_pred HHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccC
Confidence 999988 8999999999999999655799999999 99999999963
No 9
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=2.2e-45 Score=309.88 Aligned_cols=199 Identities=30% Similarity=0.418 Sum_probs=172.2
Q ss_pred ceecCCCCcccCcceecccccCCcCCCCCChHHHHHHHHHHHHcCCCeeeCcCCcCCCchHHHHHHHHhC--CCCCCeEE
Q 028264 7 RIKLGSQGLEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKG--GMRERVEL 84 (211)
Q Consensus 7 ~~~lg~~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~~e~~lg~~l~~--~~R~~~~i 84 (211)
||+||++|++||.||||||++|+.|+ ..+.+++.++++.|+++|||+||||+.||.|.+|..+|++|++ .+|++++|
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~~~-~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~~~R~~v~I 79 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSVFG-PVSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKALGIPREKYVV 79 (314)
T ss_pred CCcCCCCCCcccCcccccccccCCCC-CCCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhCCCCcceEEE
Confidence 68999999999999999999986565 3577889999999999999999999999999999999999987 46999999
Q ss_pred EeccCCcCCCCCCCCCCHHHHHHHHHHHhhHcCCCccceEeecCCCCC---CCHHHHHHHHHHHHHcCCccEEecccccH
Q 028264 85 ATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK---IPIEVTIGELKKLVEEGKIKYIGLSEACA 161 (211)
Q Consensus 85 ~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~---~~~~~~~~~l~~l~~~G~i~~iGvs~~~~ 161 (211)
+||++.... ..+.+++.+++++++||++||+||+|+|++|+|+.. .+.+++|++|++|+++|+||+||+|||++
T Consensus 80 ~TK~~~~~~---~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~ 156 (314)
T PLN02587 80 STKCGRYGE---GFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGKVRFIGITGLPL 156 (314)
T ss_pred EeccccCCC---CCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCCeEEEEecCCCH
Confidence 999974321 124689999999999999999999999999999743 34578999999999999999999999999
Q ss_pred HHHHHHhcc-----CCeeEEccccCccccCchhhHHHHHHhh-cCchhhhhhhhh
Q 028264 162 ATIRRAHAV-----HPITAVQLEWSLWSRDVEAEIVPTCSDC-LGNLALELLRMV 210 (211)
Q Consensus 162 ~~l~~~~~~-----~~~~~~q~~~~~~~~~~~~~l~~~~~~~-~~~i~~~~l~~~ 210 (211)
++++.+.+. +.+.++|+.||+.++.. .+++++|+++ +++++|+||+-+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ll~~~~~~gi~v~a~spl~~G 210 (314)
T PLN02587 157 AIFTYVLDRVPPGTVDVILSYCHYSLNDSSL-EDLLPYLKSKGVGVISASPLAMG 210 (314)
T ss_pred HHHHHHHHhhhcCCCCeEEeccccCcchhhH-HHHHHHHHHcCceEEEechhhcc
Confidence 888777653 24445678999887653 4899999999 999999999744
No 10
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=4e-45 Score=305.08 Aligned_cols=206 Identities=24% Similarity=0.378 Sum_probs=177.5
Q ss_pred CCCcccceecCCCCcccCcceecccccCC--cCCCCCChHHHHHHHHHHHHcCCCeeeCcCCcCCCchHHHHHHHHhCCC
Q 028264 1 MAGTVKRIKLGSQGLEVSAQGLGCMAMSC--LYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGM 78 (211)
Q Consensus 1 ~~~~m~~~~lg~~g~~vs~lglG~~~~~~--~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~~e~~lg~~l~~~~ 78 (211)
|++-|...++.-+|++||++|||||++++ .||...+++++.++++.|++.|||+||||+.||+|.+|+.+|++++. .
T Consensus 1 ~~~~~~~~~~~l~g~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~-~ 79 (290)
T PRK10376 1 MSTIMSSGTFTLGGRSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHP-Y 79 (290)
T ss_pred CcccccCCceecCCeeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhc-C
Confidence 66767555554459999999999999975 36655577889999999999999999999999999999999999976 6
Q ss_pred CCCeEEEeccCCcCCCC--CCCCCCHHHHHHHHHHHhhHcCCCccceEeecCCCC-----CCCHHHHHHHHHHHHHcCCc
Q 028264 79 RERVELATKFGISFADG--GKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDT-----KIPIEVTIGELKKLVEEGKI 151 (211)
Q Consensus 79 R~~~~i~tK~~~~~~~~--~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~-----~~~~~~~~~~l~~l~~~G~i 151 (211)
|++++|+||++.....+ .....+++.+++++++||++|++||+|+|++|+++. ..+.+++|++|++|+++|+|
T Consensus 80 R~~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~l~~~Gki 159 (290)
T PRK10376 80 PDDLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLAELQRQGLV 159 (290)
T ss_pred CCeEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHHHHHHCCce
Confidence 99999999987533111 123568999999999999999999999999887421 23578999999999999999
Q ss_pred cEEecccccHHHHHHHhccCCeeEEccccCccccCchhhHHHHHHhh-cCchhhhhhh
Q 028264 152 KYIGLSEACAATIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCSDC-LGNLALELLR 208 (211)
Q Consensus 152 ~~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~-~~~i~~~~l~ 208 (211)
|+||+|||++++++++.+..+++++|++||++++.. .+++++|+++ |++++|+||.
T Consensus 160 r~iGvSn~~~~~l~~~~~~~~~~~~q~~~~~~~~~~-~~~~~~~~~~gi~v~a~~pL~ 216 (290)
T PRK10376 160 RHIGLSNVTPTQVAEARKIAEIVCVQNHYNLAHRAD-DALIDALARDGIAYVPFFPLG 216 (290)
T ss_pred eEEEecCCCHHHHHHHHhhCCeEEEecccCCCcCCh-HHHHHHHHHcCCEEEEeecCC
Confidence 999999999999999998889999999999999864 5799999999 9999999985
No 11
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=5.3e-43 Score=289.15 Aligned_cols=176 Identities=24% Similarity=0.335 Sum_probs=158.0
Q ss_pred cccCcceecccccCCcCCCCCChHHHHHHHHHHHHcCCCeeeCcCCcCCCchHHHHHHHHhC--CCCCCeEEEeccCCcC
Q 028264 15 LEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKG--GMRERVELATKFGISF 92 (211)
Q Consensus 15 ~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~~e~~lg~~l~~--~~R~~~~i~tK~~~~~ 92 (211)
.+||.+|||||+++ .+++.++++.|++.|||+||||+.|| +|+.+|++|++ .+|++++|+||++..
T Consensus 1 ~~vs~lglGt~~~~--------~~~~~~~i~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~R~~v~i~TK~~~~- 68 (267)
T PRK11172 1 MSIPAFGLGTFRLK--------DQVVIDSVKTALELGYRAIDTAQIYD---NEAAVGQAIAESGVPRDELFITTKIWID- 68 (267)
T ss_pred CCCCCEeeEccccC--------hHHHHHHHHHHHHcCCCEEEccchhC---CHHHHHHHHHHcCCChhHeEEEEEeCCC-
Confidence 36999999999862 36789999999999999999999999 79999999985 469999999998532
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhHcCCCccceEeecCCCCC--CCHHHHHHHHHHHHHcCCccEEecccccHHHHHHHhcc
Q 028264 93 ADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK--IPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV 170 (211)
Q Consensus 93 ~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~--~~~~~~~~~l~~l~~~G~i~~iGvs~~~~~~l~~~~~~ 170 (211)
..+++.+++++++||++||+||+|+|++|+|++. .+.+++|++|++++++|+||+||+|||+.++++++++.
T Consensus 69 ------~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~ 142 (267)
T PRK11172 69 ------NLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTREIGISNFTIALMKQAIAA 142 (267)
T ss_pred ------CCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHHHHh
Confidence 2578999999999999999999999999999763 56789999999999999999999999999999988775
Q ss_pred ---CCeeEEccccCccccCchhhHHHHHHhh-cCchhhhhhhhh
Q 028264 171 ---HPITAVQLEWSLWSRDVEAEIVPTCSDC-LGNLALELLRMV 210 (211)
Q Consensus 171 ---~~~~~~q~~~~~~~~~~~~~l~~~~~~~-~~~i~~~~l~~~ 210 (211)
.+|+++|++||++++. .+++++|+++ |++++|+||.-+
T Consensus 143 ~~~~~~~~~Q~~~~~~~~~--~~ll~~~~~~gi~v~a~spl~~G 184 (267)
T PRK11172 143 VGAENIATNQIELSPYLQN--RKVVAFAKEHGIHVTSYMTLAYG 184 (267)
T ss_pred cCCCCCeEEeeecCCCCCc--HHHHHHHHHCCCEEEEECCCCCC
Confidence 3789999999999986 6899999999 999999999643
No 12
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=3.6e-43 Score=291.83 Aligned_cols=187 Identities=29% Similarity=0.396 Sum_probs=162.9
Q ss_pred cceecccccCCcCCCCCChHHHHHHHHHHHHcCCCeeeCcCCcCCCchHHHHHHHHhC--CCCCCeEEEeccCCcCCCCC
Q 028264 19 AQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKG--GMRERVELATKFGISFADGG 96 (211)
Q Consensus 19 ~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~~e~~lg~~l~~--~~R~~~~i~tK~~~~~~~~~ 96 (211)
+||||||++++. ..+++++.++++.|++.|||+||||+.||+|.+|+.+|++|++ .+|++++|+||+.... ..
T Consensus 1 ~l~lG~~~~~~~---~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~~~~r~~~~i~tK~~~~~--~~ 75 (283)
T PF00248_consen 1 PLGLGTWRLGGE---RVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKSRVPRDDIFISTKVYGDG--KP 75 (283)
T ss_dssp SBEEECTTBTTT---TSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHTSSTGGGSEEEEEEESSS--ST
T ss_pred CEEEEccccCCC---CCCHHHHHHHHHHHHHcCCCeeccccccccccccccccccccccccccccccccccccccc--cc
Confidence 589999998642 5689999999999999999999999999999999999999988 7899999999991111 12
Q ss_pred CCCCCHHHHHHHHHHHhhHcCCCccceEeecCCCCCCC-HHHHHHHHHHHHHcCCccEEecccccHHHHHHH--hccCCe
Q 028264 97 KIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIP-IEVTIGELKKLVEEGKIKYIGLSEACAATIRRA--HAVHPI 173 (211)
Q Consensus 97 ~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~-~~~~~~~l~~l~~~G~i~~iGvs~~~~~~l~~~--~~~~~~ 173 (211)
....+++.+++++++||++||++|+|+|++|+|+...+ .+++|++|++|+++|+||+||+|||+++.++++ ...++|
T Consensus 76 ~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~ 155 (283)
T PF00248_consen 76 EPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIGVSNFSPEQLEAALKIGSIPP 155 (283)
T ss_dssp GGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHTCTSS-E
T ss_pred cccccccccccccccccccccccchhccccccccccccccchhhhhhhhccccccccccccccccccccccccccccccc
Confidence 34578999999999999999999999999999999988 899999999999999999999999999999999 444899
Q ss_pred eEEccccCccccCchhhHHHHHHhh-cCchhhhhhhhh
Q 028264 174 TAVQLEWSLWSRDVEAEIVPTCSDC-LGNLALELLRMV 210 (211)
Q Consensus 174 ~~~q~~~~~~~~~~~~~l~~~~~~~-~~~i~~~~l~~~ 210 (211)
+++|++||++++....+++++|+++ |++++|+||.-+
T Consensus 156 ~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~G 193 (283)
T PF00248_consen 156 DVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAGG 193 (283)
T ss_dssp SEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGGG
T ss_pred cccccccccccccccccccccccccccccccccccccC
Confidence 9999999999777778999999999 999999999865
No 13
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=7.3e-43 Score=291.51 Aligned_cols=185 Identities=21% Similarity=0.251 Sum_probs=162.9
Q ss_pred CcccCcceecccccCCc-------CCCCCChHHHHHHHHHHHHcCCCeeeCcCCcCCCchHHHHHHHHhCCCCCCeEEEe
Q 028264 14 GLEVSAQGLGCMAMSCL-------YGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELAT 86 (211)
Q Consensus 14 g~~vs~lglG~~~~~~~-------~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~~e~~lg~~l~~~~R~~~~i~t 86 (211)
+++||+||||||.+|+. |+ ..+.+++.++++.|+++||||||||+.|| .+|+.+|++|+...+++++++|
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~-~~~~~ea~~~l~~A~~~Gin~~DTA~~YG--~SE~~lG~al~~~~~~~~~i~t 78 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRG-RTPEAEARDILNIAARAGLSVLDASGLFG--RAETVLGQLIPRPVPFRVTLST 78 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCC-CCCHHHHHHHHHHHHHcCCCEEecchhhh--hHHHHHhhhhccCCceEeeccc
Confidence 57899999999999864 33 46889999999999999999999999997 7999999999752346788999
Q ss_pred ccCCcCCCCCCCCCCHHHHHHHHHHHhhHcCCCccceEeecCCCCC-CCH-HHHHHHHHHHHHcCCccEEecccccHHHH
Q 028264 87 KFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK-IPI-EVTIGELKKLVEEGKIKYIGLSEACAATI 164 (211)
Q Consensus 87 K~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~-~~~-~~~~~~l~~l~~~G~i~~iGvs~~~~~~l 164 (211)
|.. +.+++.+++++++||++||+||+|+|++|+|++. .+. +++|++|++|+++|+||+||+||++++++
T Consensus 79 k~~---------~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~~ 149 (292)
T PRK14863 79 VRA---------DRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQGLFAKIGVSAHASDDP 149 (292)
T ss_pred ccc---------cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcceEeeeccCHHHH
Confidence 842 2468999999999999999999999999999763 333 68899999999999999999999999999
Q ss_pred HHHhccCCeeEEccccCccccCch-hhHHHHHHhh-cCchhhhhhhhh
Q 028264 165 RRAHAVHPITAVQLEWSLWSRDVE-AEIVPTCSDC-LGNLALELLRMV 210 (211)
Q Consensus 165 ~~~~~~~~~~~~q~~~~~~~~~~~-~~l~~~~~~~-~~~i~~~~l~~~ 210 (211)
.++....+|+++|++||++++..+ .++++.|+++ +++++|+||.-+
T Consensus 150 ~~~~~~~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G 197 (292)
T PRK14863 150 VGVARRFKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNG 197 (292)
T ss_pred HHHHhcCCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCc
Confidence 888888899999999999999754 3699999999 999999999765
No 14
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=1.5e-41 Score=281.53 Aligned_cols=184 Identities=29% Similarity=0.334 Sum_probs=163.4
Q ss_pred CCCcccceecCCCCcccCcceecccccCCcCCCCCChHHHHHHHHHHHHcCCCeeeCcCCcCCCchHHHHHHHHhC--CC
Q 028264 1 MAGTVKRIKLGSQGLEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKG--GM 78 (211)
Q Consensus 1 ~~~~m~~~~lg~~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~~e~~lg~~l~~--~~ 78 (211)
|++.+ +.+| ++|+.||.||||||++ +.+++.++++.|++.|+|+||||+.|| +|+.+|++|++ .+
T Consensus 1 ~~~~~-~~~l-~~g~~v~~lglG~~~~--------~~~~~~~~l~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~ 67 (275)
T PRK11565 1 MANPT-VIKL-QDGNVMPQLGLGVWQA--------SNEEVITAIHKALEVGYRSIDTAAIYK---NEEGVGKALKEASVA 67 (275)
T ss_pred CCCCc-eEEc-CCCCccCCcceECccC--------CHHHHHHHHHHHHHhCCCEEEchhhhC---CHHHHHHHHHHcCCC
Confidence 44433 3567 7899999999999976 357799999999999999999999998 79999999986 36
Q ss_pred CCCeEEEeccCCcCCCCCCCCCCHHHHHHHHHHHhhHcCCCccceEeecCCCCCC-CHHHHHHHHHHHHHcCCccEEecc
Q 028264 79 RERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKI-PIEVTIGELKKLVEEGKIKYIGLS 157 (211)
Q Consensus 79 R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~-~~~~~~~~l~~l~~~G~i~~iGvs 157 (211)
|++++|+||++. .+++.+++++++||++||++|+|+|++|+|++.. +..++|++|++++++|+||+||+|
T Consensus 68 R~~~~i~tK~~~---------~~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~ir~iGvS 138 (275)
T PRK11565 68 REELFITTKLWN---------DDHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSIGVC 138 (275)
T ss_pred HHHEEEEEEecC---------cchHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCCeeEEeec
Confidence 999999999852 2478999999999999999999999999998754 478999999999999999999999
Q ss_pred cccHHHHHHHhcc--CCeeEEccccCccccCchhhHHHHHHhh-cCchhhhhhh
Q 028264 158 EACAATIRRAHAV--HPITAVQLEWSLWSRDVEAEIVPTCSDC-LGNLALELLR 208 (211)
Q Consensus 158 ~~~~~~l~~~~~~--~~~~~~q~~~~~~~~~~~~~l~~~~~~~-~~~i~~~~l~ 208 (211)
||++++++++++. .+|.++|++||++.+. .++.++|+++ +++++|+||.
T Consensus 139 n~~~~~l~~~~~~~~v~~~~~Q~~~~~~~~~--~~~~~~~~~~~i~~~a~spl~ 190 (275)
T PRK11565 139 NFQIHHLQRLIDETGVTPVINQIELHPLMQQ--RQLHAWNATHKIQTESWSPLA 190 (275)
T ss_pred cCCHHHHHHHHHhCCCCceeeeeecCCccch--HHHHHHHHHCCCEEEEEccCC
Confidence 9999999998765 4689999999999886 6899999999 9999999985
No 15
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=4.9e-42 Score=271.17 Aligned_cols=202 Identities=29% Similarity=0.431 Sum_probs=183.7
Q ss_pred ccceecCCCCcccCcceecccccCCcCCCCCChHHHHHHHHHHHHcCCCeeeCcCCcCCCchHHHHHHHHhC--CCCCCe
Q 028264 5 VKRIKLGSQGLEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKG--GMRERV 82 (211)
Q Consensus 5 m~~~~lg~~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~~e~~lg~~l~~--~~R~~~ 82 (211)
|++.++++.|+++|++.+|+|++.. |+ ....+....++.|++.||++||-|+.||+|++|+.+|++|+- .-|+++
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d-~~--~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~p~lReki 77 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLND-WN--MSARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLAPGLREKI 77 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhh-cc--CCHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcChhhhhhe
Confidence 7889999999999999999999954 43 455789999999999999999999999999999999999977 349999
Q ss_pred EEEeccCCcCCCC-----CCCCCCHHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCccEEecc
Q 028264 83 ELATKFGISFADG-----GKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS 157 (211)
Q Consensus 83 ~i~tK~~~~~~~~-----~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~iGvs 157 (211)
.|+||.+...+.. ...+.|.++|.++++.||++|++||+|++++|+||+-.+.+|+.+|+..|.++||+|++|||
T Consensus 78 eivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd~eeVAeAf~~L~~sGKVr~fGVS 157 (298)
T COG4989 78 EIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMDAEEVAEAFTHLHKSGKVRHFGVS 157 (298)
T ss_pred EeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCCHHHHHHHHHHHHhcCCeeeeecC
Confidence 9999998765422 34578999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHhcc--CCeeEEccccCccccC-chhhHHHHHHhh-cCchhhhhhhh
Q 028264 158 EACAATIRRAHAV--HPITAVQLEWSLWSRD-VEAEIVPTCSDC-LGNLALELLRM 209 (211)
Q Consensus 158 ~~~~~~l~~~~~~--~~~~~~q~~~~~~~~~-~~~~l~~~~~~~-~~~i~~~~l~~ 209 (211)
||++.+++-+.+. .++.++|+++|++++. ..++.+++|+++ +..+|||||.-
T Consensus 158 Nf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~g 213 (298)
T COG4989 158 NFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGG 213 (298)
T ss_pred CCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCC
Confidence 9999999988877 5789999999999987 456899999999 99999999963
No 16
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=1.5e-39 Score=269.60 Aligned_cols=197 Identities=29% Similarity=0.341 Sum_probs=179.1
Q ss_pred ccceecCCCCcccCcceecccccCCcCCCCCChHHHHHHHHHHHHcCCCeeeCcCCcCCCchHHHHHHHHhCCCCCCeEE
Q 028264 5 VKRIKLGSQGLEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVEL 84 (211)
Q Consensus 5 m~~~~lg~~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~~e~~lg~~l~~~~R~~~~i 84 (211)
|.||++|++|.++|.+|||||++...+....+.+.+.+++++|+++||||||||..|..|.+|..+|++|++.+|+++++
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~~Rekv~L 80 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDGYREKVKL 80 (391)
T ss_pred CchhhcCCCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhcccceEEE
Confidence 89999999999999999999999776667789999999999999999999999999988899999999999988999999
Q ss_pred EeccCCcCCCCCCCCCCHHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHH-----HHHHHHHHHHHcCCccEEecccc
Q 028264 85 ATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIE-----VTIGELKKLVEEGKIKYIGLSEA 159 (211)
Q Consensus 85 ~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~-----~~~~~l~~l~~~G~i~~iGvs~~ 159 (211)
+||+.... ..+++++++-++++|++|++||+|+|++|..+. ..++ ..++.+++++++|+||++|+|.|
T Consensus 81 aTKlp~~~------~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~-e~~~k~~~~g~~df~~kak~eGkIr~~GFSfH 153 (391)
T COG1453 81 ATKLPSWP------VKDREDMERIFNEQLEKLGTDYIDYYLIHGLNT-ETWEKIERLGVFDFLEKAKAEGKIRNAGFSFH 153 (391)
T ss_pred EeecCCcc------ccCHHHHHHHHHHHHHHhCCchhhhhhhccccH-HHHHHHHccChHHHHHHHHhcCcEEEeeecCC
Confidence 99998644 257999999999999999999999999999976 4343 35999999999999999999998
Q ss_pred cH-HHHHHHhccCCeeEEccccCccccCch--hhHHHHHHhh-cCchhhhhhh
Q 028264 160 CA-ATIRRAHAVHPITAVQLEWSLWSRDVE--AEIVPTCSDC-LGNLALELLR 208 (211)
Q Consensus 160 ~~-~~l~~~~~~~~~~~~q~~~~~~~~~~~--~~l~~~~~~~-~~~i~~~~l~ 208 (211)
+. +.+.+++...+++++|+.||.++.... .+.++.|.++ +||+.++|++
T Consensus 154 gs~e~~~~iv~a~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~ 206 (391)
T COG1453 154 GSTEVFKEIVDAYPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLD 206 (391)
T ss_pred CCHHHHHHHHhcCCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCC
Confidence 75 678999999999999999999998743 3788999999 9999999986
No 17
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=2.8e-39 Score=257.47 Aligned_cols=206 Identities=30% Similarity=0.399 Sum_probs=177.4
Q ss_pred cccceecCCCCcccCcceecccccCCcCCCCCChHHHHHHHHHHHHcCCCeeeCcCCcCCCchHHHHHHHHhCCCCCCeE
Q 028264 4 TVKRIKLGSQGLEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVE 83 (211)
Q Consensus 4 ~m~~~~lg~~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~~e~~lg~~l~~~~R~~~~ 83 (211)
.|++|.+|++|++||++|||+..++..||. .+.++....+.+|+.+|||+||||+-||.+++|+.+|.+++++||+.+|
T Consensus 21 rmeyR~lg~tgl~VSk~~fGga~L~~~fgd-~~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~vPR~aYy 99 (342)
T KOG1576|consen 21 RMEYRQLGSTGLRVSKLGFGGAALGQLFGD-EDEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKDVPREAYY 99 (342)
T ss_pred HHHHhhcCCCcceeeeeeecchhhhhhcCC-cchhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhhCChhhee
Confidence 389999999999999999999999988886 5667777777779999999999999999999999999999999999999
Q ss_pred EEeccCCcCCC-CCCCCCCHHHHHHHHHHHhhHcCCCccceEeecCCCCC----CCHHHHHHHHHHHHHcCCccEEeccc
Q 028264 84 LATKFGISFAD-GGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK----IPIEVTIGELKKLVEEGKIKYIGLSE 158 (211)
Q Consensus 84 i~tK~~~~~~~-~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~----~~~~~~~~~l~~l~~~G~i~~iGvs~ 158 (211)
|+||++...-+ .+..+++++.+++++++||++|+++|+|++++|..+-. ..+.|++.+|++++++||+|.||++.
T Consensus 100 IaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~Le~lk~~Gk~RfiGitg 179 (342)
T KOG1576|consen 100 IATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPALEELKQEGKIRFIGITG 179 (342)
T ss_pred eeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHHHHHHhcCceeEeeecc
Confidence 99999854422 25678999999999999999999999999999997643 23579999999999999999999999
Q ss_pred ccHHHHHHHhcc--CCeeEEc--cccCccccCchhhHHHHHHhh-cCchhhhhhhhhC
Q 028264 159 ACAATIRRAHAV--HPITAVQ--LEWSLWSRDVEAEIVPTCSDC-LGNLALELLRMVL 211 (211)
Q Consensus 159 ~~~~~l~~~~~~--~~~~~~q--~~~~~~~~~~~~~l~~~~~~~-~~~i~~~~l~~~~ 211 (211)
+..+.+..+++. +.++++- .+|++.+..- -...+..++. ++||+-+++.|+|
T Consensus 180 ypldvl~~~ae~~~G~~dvvlsY~ry~l~d~tL-l~~~~~~~sk~vgVi~AsalsmgL 236 (342)
T KOG1576|consen 180 YPLDVLTECAERGKGRLDVVLSYCRYTLNDNTL-LRYLKRLKSKGVGVINASALSMGL 236 (342)
T ss_pred cchHHHHHHHhcCCCceeeehhhhhhccccHHH-HHHHHHHHhcCceEEehhhHHHHH
Confidence 999999999877 4577776 5666655542 2445555555 9999999999986
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=98.30 E-value=1.2e-06 Score=69.92 Aligned_cols=67 Identities=19% Similarity=0.165 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHcCCccEEecccccHHHHHHHhcc--CCeeEEccccCccccCchhhHHHHHHhh-cCch
Q 028264 135 IEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV--HPITAVQLEWSLWSRDVEAEIVPTCSDC-LGNL 202 (211)
Q Consensus 135 ~~~~~~~l~~l~~~G~i~~iGvs~~~~~~l~~~~~~--~~~~~~q~~~~~~~~~~~~~l~~~~~~~-~~~i 202 (211)
+.++|+.||+++.+|+|..||+|.|++.+++++++. +.|..+|++..-++.-| ++|.++|.+| +-+.
T Consensus 155 lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvvP-pdLqafa~~hdiQLl 224 (285)
T KOG3023|consen 155 LKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVVP-PDLQAFADRHDIQLL 224 (285)
T ss_pred HHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccCC-HHHHHHhhhcceeee
Confidence 357899999999999999999999999999999998 78999999999888775 6999999999 6543
No 19
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=90.70 E-value=7 Score=33.12 Aligned_cols=132 Identities=11% Similarity=0.022 Sum_probs=83.0
Q ss_pred ChHHHHHHHHHHHHcCCCeeeCc--------CCcCCC----chHHHHHHHHhCC---CCCCeEEEeccCCcCCCCCCCCC
Q 028264 36 PEPDMIALIHHAINSGITLLDTS--------DIYGPY----TNEILVGKALKGG---MRERVELATKFGISFADGGKIRG 100 (211)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~DtA--------~~Yg~g----~~e~~lg~~l~~~---~R~~~~i~tK~~~~~~~~~~~~~ 100 (211)
++++..++.+.+.+.|+..+|-- ..||.| ...+.+.+.++.. -.+++-|+.|+...+.
T Consensus 73 ~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~------- 145 (312)
T PRK10550 73 YPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWD------- 145 (312)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCC-------
Confidence 56777777888888999999832 135544 3445555555541 1225778889765441
Q ss_pred CHHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHH--H-HHHHHHHHHHcCCccEEeccc-ccHHHHHHHhccCCeeEE
Q 028264 101 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIE--V-TIGELKKLVEEGKIKYIGLSE-ACAATIRRAHAVHPITAV 176 (211)
Q Consensus 101 ~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~--~-~~~~l~~l~~~G~i~~iGvs~-~~~~~l~~~~~~~~~~~~ 176 (211)
+.+. ...+-+.++..| +|.+.+|......... . -|+...++++.-.|--||... ++++..+++++....+.+
T Consensus 146 ~~~~-~~~~a~~l~~~G---vd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~DgV 221 (312)
T PRK10550 146 SGER-KFEIADAVQQAG---ATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAV 221 (312)
T ss_pred CchH-HHHHHHHHHhcC---CCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCEE
Confidence 1222 235666677777 5777888753322111 1 377888888876777788776 578888888876555666
Q ss_pred cc
Q 028264 177 QL 178 (211)
Q Consensus 177 q~ 178 (211)
++
T Consensus 222 mi 223 (312)
T PRK10550 222 MI 223 (312)
T ss_pred EE
Confidence 55
No 20
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=89.67 E-value=2.1 Score=37.43 Aligned_cols=82 Identities=12% Similarity=0.140 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHHcCCCeeeCcCCcCCCchHHHHHHHHhCCCCCCeEEEeccCCcCCCCCCCCCCHHHHHHHHHHHhhHc
Q 028264 37 EPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRL 116 (211)
Q Consensus 37 ~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~~e~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~L 116 (211)
......++++|++.|++++|||.... .+..+.+.. .+..+.+..-.|..+ +.+--.....+++...
T Consensus 78 ~~~~~~i~ka~i~~gv~yvDts~~~~---~~~~~~~~a---~~Agit~v~~~G~dP------Gi~nv~a~~a~~~~~~-- 143 (389)
T COG1748 78 PFVDLTILKACIKTGVDYVDTSYYEE---PPWKLDEEA---KKAGITAVLGCGFDP------GITNVLAAYAAKELFD-- 143 (389)
T ss_pred chhhHHHHHHHHHhCCCEEEcccCCc---hhhhhhHHH---HHcCeEEEcccCcCc------chHHHHHHHHHHHhhc--
Confidence 35566899999999999999998665 323233322 345555666666544 3444444444444444
Q ss_pred CCCccceEeecCCCCC
Q 028264 117 DIDCIDLYYQHRVDTK 132 (211)
Q Consensus 117 g~~~lDl~~lh~~~~~ 132 (211)
.++++|+|..+.|++.
T Consensus 144 ~i~si~iy~g~~g~~~ 159 (389)
T COG1748 144 EIESIDIYVGGLGEHG 159 (389)
T ss_pred cccEEEEEEecCCCCC
Confidence 5789999999998765
No 21
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=88.90 E-value=1.5 Score=34.83 Aligned_cols=66 Identities=17% Similarity=0.148 Sum_probs=47.1
Q ss_pred hhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCccEEecc-cccHHHHHHHhccCCeeEEcccc
Q 028264 113 LKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS-EACAATIRRAHAVHPITAVQLEW 180 (211)
Q Consensus 113 L~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~iGvs-~~~~~~l~~~~~~~~~~~~q~~~ 180 (211)
+..+|+|++-+.+.....+..+.+.+-+....+ .+.++.+||. |-+++.+.++++..+++++|+.-
T Consensus 17 ~~~~GaD~iGfIf~~~SpR~V~~~~a~~i~~~~--~~~~~~VgVf~~~~~~~i~~~~~~~~~d~vQLHG 83 (207)
T PRK13958 17 ASQLPIDAIGFIHYEKSKRHQTITQIKKLASAV--PNHIDKVCVVVNPDLTTIEHILSNTSINTIQLHG 83 (207)
T ss_pred HHHcCCCEEEEecCCCCcccCCHHHHHHHHHhC--CCCCCEEEEEeCCCHHHHHHHHHhCCCCEEEECC
Confidence 456999999887555444445555443333333 3567889986 78899999999999999999975
No 22
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=85.08 E-value=2.5 Score=33.68 Aligned_cols=65 Identities=18% Similarity=0.210 Sum_probs=44.8
Q ss_pred hHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCccEEecc-cccHHHHHHHhccCCeeEEcccc
Q 028264 114 KRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS-EACAATIRRAHAVHPITAVQLEW 180 (211)
Q Consensus 114 ~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~iGvs-~~~~~~l~~~~~~~~~~~~q~~~ 180 (211)
..+|+|++-+.+.....+..+.+..-+....+ .+.+..+||. +-+++.+.++++...++++|+.-
T Consensus 20 ~~~Gad~iGfI~~~~S~R~V~~~~a~~i~~~~--~~~i~~VgVf~~~~~~~i~~~~~~~~~d~vQLHg 85 (210)
T PRK01222 20 AELGADAIGFVFYPKSPRYVSPEQAAELAAAL--PPFVKVVGVFVNASDEEIDEIVETVPLDLLQLHG 85 (210)
T ss_pred HHcCCCEEEEccCCCCCCcCCHHHHHHHHHhC--CCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECC
Confidence 46899998887544333334444333333322 3568889987 57889999999999999999965
No 23
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=84.98 E-value=22 Score=29.88 Aligned_cols=146 Identities=14% Similarity=0.073 Sum_probs=87.0
Q ss_pred ChHHHHHHHHHHHHcCCCeeeCcCCcCCC-chHHHHHHHHhC-CCCCCeEEEeccCCcCCCCCCCCCCHHHHHHHHHHHh
Q 028264 36 PEPDMIALIHHAINSGITLLDTSDIYGPY-TNEILVGKALKG-GMRERVELATKFGISFADGGKIRGDPAYVRACCEASL 113 (211)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g-~~e~~lg~~l~~-~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL 113 (211)
+.++..+.++.+.+.|++.|+.-- |.. ..+...=+++++ .+ ++-|.-+....+ +.+...+ +-+.|
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~--g~~~~~d~~~v~~lr~~~g--~~~l~vD~n~~~--------~~~~A~~-~~~~l 200 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKL--GGDLEDDIERIRAIREAAP--DARLRVDANQGW--------TPEEAVE-LLREL 200 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEe--CCChhhHHHHHHHHHHhCC--CCeEEEeCCCCc--------CHHHHHH-HHHHH
Confidence 456677888888999999998753 211 122223344544 33 566666654333 3443322 22334
Q ss_pred hHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCcc-EEecccccHHHHHHHhccCCeeEEccccCccc-cCchhhH
Q 028264 114 KRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWS-RDVEAEI 191 (211)
Q Consensus 114 ~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~-~~~~~~l 191 (211)
+..+ +.++..|-+. +-++.+.++.+...+. +.|=+-++.+.+.++++....+++|...+.+= -....++
T Consensus 201 ~~~~-----l~~iEeP~~~----~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~GGi~~~~~~ 271 (316)
T cd03319 201 AELG-----VELIEQPVPA----GDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYDGINIKLMKTGGLTEALRI 271 (316)
T ss_pred HhcC-----CCEEECCCCC----CCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEeccccCCHHHHHHH
Confidence 4444 4444444322 2366677788776665 33444478889999999888899998766531 1122478
Q ss_pred HHHHHhh-cCchh
Q 028264 192 VPTCSDC-LGNLA 203 (211)
Q Consensus 192 ~~~~~~~-~~~i~ 203 (211)
...|+++ +.+..
T Consensus 272 ~~~a~~~gi~~~~ 284 (316)
T cd03319 272 ADLARAAGLKVMV 284 (316)
T ss_pred HHHHHHcCCCEEE
Confidence 9999998 65553
No 24
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=83.33 E-value=9.4 Score=31.16 Aligned_cols=109 Identities=17% Similarity=0.107 Sum_probs=63.3
Q ss_pred CChHHHHHHHHHHHHcCCCeeeCcCCcCCCchHHHHHH--------------------HHhCCCCCCeEEEeccCCcCCC
Q 028264 35 EPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGK--------------------ALKGGMRERVELATKFGISFAD 94 (211)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~~e~~lg~--------------------~l~~~~R~~~~i~tK~~~~~~~ 94 (211)
.+.++..++.++|-+.||.||=|.-... +-.++-+ .+.+ ....++|+|=.
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~---s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~-tgkPvIlSTG~------ 122 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEE---SVDFLEELGVPAYKIASGDLTNLPLLEYIAK-TGKPVILSTGM------ 122 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHH---HHHHHHHHT-SEEEE-GGGTT-HHHHHHHHT-T-S-EEEE-TT------
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHH---HHHHHHHcCCCEEEeccccccCHHHHHHHHH-hCCcEEEECCC------
Confidence 4778899999999999999998775332 2222211 1111 34557777654
Q ss_pred CCCCCCCHHHHHHHHHHHhhHcCCCccceEeecCCCCC-CCHHH-HHHHHHHHHHcCCccEEecccccHH
Q 028264 95 GGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK-IPIEV-TIGELKKLVEEGKIKYIGLSEACAA 162 (211)
Q Consensus 95 ~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~-~~~~~-~~~~l~~l~~~G~i~~iGvs~~~~~ 162 (211)
.+.+.|+++++...++-+ -++.++|+.... .+.++ -++.|..|++.=- --||.|.|+..
T Consensus 123 -----stl~EI~~Av~~~~~~~~---~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~-~~vG~SDHt~g 183 (241)
T PF03102_consen 123 -----STLEEIERAVEVLREAGN---EDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG-VPVGYSDHTDG 183 (241)
T ss_dssp -------HHHHHHHHHHHHHHCT-----EEEEEE-SSSS--GGG--TTHHHHHHHHST-SEEEEEE-SSS
T ss_pred -----CCHHHHHHHHHHHHhcCC---CCEEEEecCCCCCCChHHcChHHHHHHHHhcC-CCEEeCCCCCC
Confidence 357888888887755544 589999998543 34443 4777777775433 45899998764
No 25
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=82.70 E-value=10 Score=30.31 Aligned_cols=150 Identities=13% Similarity=0.118 Sum_probs=82.2
Q ss_pred CChHHHHHHHHHHHHcCCCeeeCc-CCcCCCchHHHHHHHHhCCCCCCeEEEeccCCcCCCCCCCCCCHHHHHHHHHHHh
Q 028264 35 EPEPDMIALIHHAINSGITLLDTS-DIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASL 113 (211)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gin~~DtA-~~Yg~g~~e~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL 113 (211)
.+.++..++++...+.|+..+++. +..+. ...+.+.+..+..+... +.+... ...+.++..++..
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~-~~~~~v~~~~~~~~~~~--~~~~~~----------~~~~~i~~~~~~~- 76 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASE-DDFEQVRRLREALPNAR--LQALCR----------ANEEDIERAVEAA- 76 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSH-HHHHHHHHHHHHHHSSE--EEEEEE----------SCHHHHHHHHHHH-
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCH-HHHHHhhhhhhhhcccc--cceeee----------ehHHHHHHHHHhh-
Confidence 467888999999999999999999 43331 12222333332222322 222221 2366677767644
Q ss_pred hHcCCCccceEeecCC-----CCCCC----HHHHHHHHHHHHHcCCccEEeccc---ccHHHHHHHhcc---CCeeEEcc
Q 028264 114 KRLDIDCIDLYYQHRV-----DTKIP----IEVTIGELKKLVEEGKIKYIGLSE---ACAATIRRAHAV---HPITAVQL 178 (211)
Q Consensus 114 ~~Lg~~~lDl~~lh~~-----~~~~~----~~~~~~~l~~l~~~G~i~~iGvs~---~~~~~l~~~~~~---~~~~~~q~ 178 (211)
...|.+.+.++.--++ .-..+ .+.+.+.++..++.|.--.+++-. ++++.+.++.+. ..++.+.+
T Consensus 77 ~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l 156 (237)
T PF00682_consen 77 KEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYL 156 (237)
T ss_dssp HHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEE
T ss_pred HhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEe
Confidence 5678877776643322 00111 345566667777888888888743 556666555544 34555544
Q ss_pred c--cCccccCchhhHHHHHHhh
Q 028264 179 E--WSLWSRDVEAEIVPTCSDC 198 (211)
Q Consensus 179 ~--~~~~~~~~~~~l~~~~~~~ 198 (211)
. .....+....+++...++.
T Consensus 157 ~Dt~G~~~P~~v~~lv~~~~~~ 178 (237)
T PF00682_consen 157 ADTVGIMTPEDVAELVRALREA 178 (237)
T ss_dssp EETTS-S-HHHHHHHHHHHHHH
T ss_pred eCccCCcCHHHHHHHHHHHHHh
Confidence 3 2333333223666666665
No 26
>PRK13796 GTPase YqeH; Provisional
Probab=82.58 E-value=31 Score=29.82 Aligned_cols=120 Identities=13% Similarity=0.142 Sum_probs=79.8
Q ss_pred CChHHHHHHHHHHHHcC---CCeeeCcCCcCCCchHHHHHHHHhCCCCCCeEEEeccCCcCCCCCCCCCCHHHHHHHHHH
Q 028264 35 EPEPDMIALIHHAINSG---ITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEA 111 (211)
Q Consensus 35 ~~~~~~~~~l~~A~~~G---in~~DtA~~Yg~g~~e~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~ 111 (211)
.+.++..++++...+.- +-.+|..+.-+ .-...+.+... .+.-++|.+|..... .....+.+.+-++.
T Consensus 54 ~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~--s~~~~L~~~~~--~kpviLViNK~DLl~-----~~~~~~~i~~~l~~ 124 (365)
T PRK13796 54 LTDDDFLKLLNGIGDSDALVVNVVDIFDFNG--SWIPGLHRFVG--NNPVLLVGNKADLLP-----KSVKKNKVKNWLRQ 124 (365)
T ss_pred CCHHHHHHHHHhhcccCcEEEEEEECccCCC--chhHHHHHHhC--CCCEEEEEEchhhCC-----CccCHHHHHHHHHH
Confidence 45666777777776554 45678666443 23333444432 456688999987543 12345667666777
Q ss_pred HhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCccEEecccccHHHH
Q 028264 112 SLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATI 164 (211)
Q Consensus 112 sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~iGvs~~~~~~l 164 (211)
..+.+|....|++.+.... ...++++++.+.+..+.+.+--+|.+|..-..+
T Consensus 125 ~~k~~g~~~~~v~~vSAk~-g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTL 176 (365)
T PRK13796 125 EAKELGLRPVDVVLISAQK-GHGIDELLEAIEKYREGRDVYVVGVTNVGKSTL 176 (365)
T ss_pred HHHhcCCCcCcEEEEECCC-CCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHH
Confidence 7777786555777776543 356788999998887778888999999876543
No 27
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=79.90 E-value=20 Score=32.38 Aligned_cols=67 Identities=9% Similarity=0.100 Sum_probs=45.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCccE----EecccccHHHHHHHhcc---CCeeEEccccCccccCchhhHHHHHHhh
Q 028264 130 DTKIPIEVTIGELKKLVEEGKIKY----IGLSEACAATIRRAHAV---HPITAVQLEWSLWSRDVEAEIVPTCSDC 198 (211)
Q Consensus 130 ~~~~~~~~~~~~l~~l~~~G~i~~----iGvs~~~~~~l~~~~~~---~~~~~~q~~~~~~~~~~~~~l~~~~~~~ 198 (211)
......++..++++.+++.|..-. +|+-+.+.+.+++.++. .+|+. +.++.+.+-+..++.+.+++.
T Consensus 317 ~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~~~~--~~~~~~tP~PGT~l~~~~~~~ 390 (497)
T TIGR02026 317 RKGTTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLDWDPDQ--ANWLMYTPWPFTSLFGELSDR 390 (497)
T ss_pred cCCCCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHHcCCCc--eEEEEecCCCCcHHHHHHHhh
Confidence 334567788999999999987433 56667777777666554 45544 344666666666788777665
No 28
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=79.87 E-value=15 Score=32.51 Aligned_cols=61 Identities=16% Similarity=0.095 Sum_probs=39.8
Q ss_pred CCCHHHHHHHHHHHhhHcCCCccceEeecCCCC----------C--CCHH---HHHHHHH-HHHHcCCccEEecccccH
Q 028264 99 RGDPAYVRACCEASLKRLDIDCIDLYYQHRVDT----------K--IPIE---VTIGELK-KLVEEGKIKYIGLSEACA 161 (211)
Q Consensus 99 ~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~----------~--~~~~---~~~~~l~-~l~~~G~i~~iGvs~~~~ 161 (211)
..+.+.+.+.++..++ |+.+++.+|.+-.... . .+.+ +.++... .|.+.|. +.+|+|||.-
T Consensus 200 ~QT~~~~~~~l~~a~~-l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy-~~yeisnfa~ 276 (416)
T COG0635 200 GQTLESLKEDLEQALE-LGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGY-RQYEISNFAK 276 (416)
T ss_pred CCCHHHHHHHHHHHHh-CCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCC-cEEeechhcC
Confidence 3678888888888765 6689999998765311 0 1112 3444444 4556666 8899999876
No 29
>PLN02389 biotin synthase
Probab=79.80 E-value=41 Score=29.38 Aligned_cols=101 Identities=15% Similarity=0.117 Sum_probs=55.9
Q ss_pred CChHHHHHHHHHHHHcCCCeeeCcCCc-CCCc---hHHHHHHHHhCCCCCCeEEEeccCCcCCCCCCCCCCHHHHHHHHH
Q 028264 35 EPEPDMIALIHHAINSGITLLDTSDIY-GPYT---NEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCE 110 (211)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gin~~DtA~~Y-g~g~---~e~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~ 110 (211)
.+.+++.+.++.+.+.|++.|-..... +.+. .-+.+-+.++.+....+.|....+. .+.+.+
T Consensus 116 Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~~l~i~~s~G~---------l~~E~l----- 181 (379)
T PLN02389 116 MSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGMEVCCTLGM---------LEKEQA----- 181 (379)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcCCcEEEECCCC---------CCHHHH-----
Confidence 478889999999999999988643211 1111 1234555555533333445443332 223322
Q ss_pred HHhhHcCCCccceEeecC-C------CCCCCHHHHHHHHHHHHHcCC
Q 028264 111 ASLKRLDIDCIDLYYQHR-V------DTKIPIEVTIGELKKLVEEGK 150 (211)
Q Consensus 111 ~sL~~Lg~~~lDl~~lh~-~------~~~~~~~~~~~~l~~l~~~G~ 150 (211)
+.|+.-|++++-.-+ .. + -...++++.++.++.+++.|.
T Consensus 182 ~~LkeAGld~~~~~L-eTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi 227 (379)
T PLN02389 182 AQLKEAGLTAYNHNL-DTSREYYPNVITTRSYDDRLETLEAVREAGI 227 (379)
T ss_pred HHHHHcCCCEEEeee-cCChHHhCCcCCCCCHHHHHHHHHHHHHcCC
Confidence 234444766543311 11 1 112457899999999999985
No 30
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=78.98 E-value=5.7 Score=31.65 Aligned_cols=64 Identities=16% Similarity=0.180 Sum_probs=45.0
Q ss_pred hHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCC-ccEEecc-cccHHHHHHHhccCCeeEEccccC
Q 028264 114 KRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGK-IKYIGLS-EACAATIRRAHAVHPITAVQLEWS 181 (211)
Q Consensus 114 ~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~-i~~iGvs-~~~~~~l~~~~~~~~~~~~q~~~~ 181 (211)
..+|.+|+-+.+.-...+..+.+++- ++.+.-. ++.+||. |.+.+.+.++++..+++.+|+.-.
T Consensus 19 ~~~gad~iG~If~~~SpR~Vs~~~a~----~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~~ld~VQlHG~ 84 (208)
T COG0135 19 AKAGADYIGFIFVPKSPRYVSPEQAR----EIASAVPKVKVVGVFVNESIEEILEIAEELGLDAVQLHGD 84 (208)
T ss_pred HHcCCCEEEEEEcCCCCCcCCHHHHH----HHHHhCCCCCEEEEECCCCHHHHHHHHHhcCCCEEEECCC
Confidence 56888988887766433445444433 3333332 7799987 578889999999999999998654
No 31
>PRK05414 urocanate hydratase; Provisional
Probab=77.06 E-value=8.4 Score=34.78 Aligned_cols=124 Identities=16% Similarity=0.098 Sum_probs=80.7
Q ss_pred HHHHHHcCCCeee--CcCCcC--------CCchHHHHHHHHhC---CCCCCeEEEeccCCcCCCC-----------CCCC
Q 028264 44 IHHAINSGITLLD--TSDIYG--------PYTNEILVGKALKG---GMRERVELATKFGISFADG-----------GKIR 99 (211)
Q Consensus 44 l~~A~~~Gin~~D--tA~~Yg--------~g~~e~~lg~~l~~---~~R~~~~i~tK~~~~~~~~-----------~~~~ 99 (211)
....-+.|+.-+= ||..|- .|.-|.++.-+-+. -.+.++|+++-++-..... -...
T Consensus 118 f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~a~rk~f~g~L~G~~~lTaGLGGMgGAQPlA~~mag~v~i~vE 197 (556)
T PRK05414 118 FNELEAKGLTMYGQMTAGSWIYIGSQGIVQGTYETFAEAARQHFGGDLAGRLVLTAGLGGMGGAQPLAATMAGAVCLAVE 197 (556)
T ss_pred HHHHHHcccccccCccccceeEEcCceeeecHHHHHHHHHHHhcCCCCceeEEEEecCCccccccHHHHHhcCceEEEEE
Confidence 4555667766332 333331 25566654433322 2367788988887433110 0011
Q ss_pred CCHHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCccEEecccccHHHHHHHhcc---CCeeEE
Q 028264 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV---HPITAV 176 (211)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~iGvs~~~~~~l~~~~~~---~~~~~~ 176 (211)
.++ ...-+|+.+.|+|.+ ..++++.++..++.+++|+..+||+-.--++.+.++++. ..+.+-
T Consensus 198 vd~-------~ri~kR~~~gyld~~-------~~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~i~pDlvtD 263 (556)
T PRK05414 198 VDE-------SRIDKRLRTGYLDEK-------ADDLDEALALAEEAKAAGEPLSIGLLGNAADVLPELVRRGIRPDLVTD 263 (556)
T ss_pred ECH-------HHHHHHHhCCcceeE-------cCCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHcCCCCCccCc
Confidence 222 334478888898875 356899999999999999999999999888999999887 445666
Q ss_pred ccccC
Q 028264 177 QLEWS 181 (211)
Q Consensus 177 q~~~~ 181 (211)
|..+|
T Consensus 264 QTSaH 268 (556)
T PRK05414 264 QTSAH 268 (556)
T ss_pred Ccccc
Confidence 77664
No 32
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=76.81 E-value=28 Score=27.39 Aligned_cols=143 Identities=16% Similarity=0.169 Sum_probs=85.1
Q ss_pred HHHHHHHHcCCCeeeCcCCcCCCchHHHHHHHHhCCCCCCeEEEeccCCcCCCCCCCCCCHHHHHHHHHHHhhHcCCCcc
Q 028264 42 ALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCI 121 (211)
Q Consensus 42 ~~l~~A~~~Gin~~DtA~~Yg~g~~e~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~l 121 (211)
+++..-++.|-+..|-.-..| .+.+.|+. .++ +.. .| ...+.+.+.+++++-+.-...| +
T Consensus 5 ~~I~~~I~pgsrVLDLGCGdG------~LL~~L~~-~k~-v~g---~G--------vEid~~~v~~cv~rGv~Viq~D-l 64 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGDG------ELLAYLKD-EKQ-VDG---YG--------VEIDPDNVAACVARGVSVIQGD-L 64 (193)
T ss_pred HHHHHHcCCCCEEEecCCCch------HHHHHHHH-hcC-CeE---EE--------EecCHHHHHHHHHcCCCEEECC-H
Confidence 456677788888888765433 13344533 111 100 01 2245666766666555444433 2
Q ss_pred ceEeecCCCCCCC----------HHHHHHHHHHHHHcCCccEEecccccHHHHHHHhc--cCCeeEEccccCccccCc--
Q 028264 122 DLYYQHRVDTKIP----------IEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHA--VHPITAVQLEWSLWSRDV-- 187 (211)
Q Consensus 122 Dl~~lh~~~~~~~----------~~~~~~~l~~l~~~G~i~~iGvs~~~~~~l~~~~~--~~~~~~~q~~~~~~~~~~-- 187 (211)
|--+-+.||...| .....+.|+++.+-|+-.-+++.||.....+.-+- ---|..-+++|+.+++..
T Consensus 65 d~gL~~f~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih 144 (193)
T PF07021_consen 65 DEGLADFPDQSFDYVILSQTLQAVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIH 144 (193)
T ss_pred HHhHhhCCCCCccEEehHhHHHhHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcc
Confidence 3333334443333 23345567788888887789999999876654443 245788899999988762
Q ss_pred ---hhhHHHHHHhh-cCchhh
Q 028264 188 ---EAEIVPTCSDC-LGNLAL 204 (211)
Q Consensus 188 ---~~~l~~~~~~~-~~~i~~ 204 (211)
-.+..++|++. +.+.-.
T Consensus 145 ~~Ti~DFe~lc~~~~i~I~~~ 165 (193)
T PF07021_consen 145 LCTIKDFEDLCRELGIRIEER 165 (193)
T ss_pred cccHHHHHHHHHHCCCEEEEE
Confidence 23788889987 655443
No 33
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=76.71 E-value=8.4 Score=34.65 Aligned_cols=123 Identities=16% Similarity=0.124 Sum_probs=79.9
Q ss_pred HHHHHHcCCCeee--CcCCcC--------CCchHHHHHHHHhC----CCCCCeEEEeccCCcCCCC-----------CCC
Q 028264 44 IHHAINSGITLLD--TSDIYG--------PYTNEILVGKALKG----GMRERVELATKFGISFADG-----------GKI 98 (211)
Q Consensus 44 l~~A~~~Gin~~D--tA~~Yg--------~g~~e~~lg~~l~~----~~R~~~~i~tK~~~~~~~~-----------~~~ 98 (211)
....-+.|+.-+= ||..|- .|.-|.++. +-++ ..+.++++++-++-..... -..
T Consensus 109 f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~-aark~f~~~L~G~~~lTaGLGGMgGAQPlA~~mag~v~i~v 187 (545)
T TIGR01228 109 FHELEAKGLMMYGQMTAGSWIYIGTQGILQGTYETFAE-LARQHFGGSLKGKWVLTAGLGGMGGAQPLAVTMNGGVSIAV 187 (545)
T ss_pred HHHHHHcccccccCccccceEEEcCcceeecHHHHHHH-HHHHhcCCCCceeEEEEeCCCccccccHHHHHHcCceEEEE
Confidence 4555667776332 333331 255666543 3333 2367788888877433110 001
Q ss_pred CCCHHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCccEEecccccHHHHHHHhcc---CCeeE
Q 028264 99 RGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV---HPITA 175 (211)
Q Consensus 99 ~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~iGvs~~~~~~l~~~~~~---~~~~~ 175 (211)
..++ ...-+|+.+.|+|.+ ..++++.++..++.+++|+..+||+-.--++.+.++++. ..+.+
T Consensus 188 Evd~-------~ri~kR~~~gyld~~-------~~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r~i~pDlvt 253 (545)
T TIGR01228 188 EVDE-------SRIDKRLETKYCDEQ-------TDSLDEALARAEEAKAEGKPISIGLLGNAAEVLPELLKRGVVPDVVT 253 (545)
T ss_pred EECH-------HHHHHHHhcCcceeE-------cCCHHHHHHHHHHHHHcCCceEEEeeccHHHHHHHHHHcCCCCCCcC
Confidence 1222 334477888898875 356899999999999999999999999888999999886 34566
Q ss_pred EccccC
Q 028264 176 VQLEWS 181 (211)
Q Consensus 176 ~q~~~~ 181 (211)
-|..+|
T Consensus 254 DQTSaH 259 (545)
T TIGR01228 254 DQTSAH 259 (545)
T ss_pred CCCccc
Confidence 677654
No 34
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=76.32 E-value=45 Score=28.29 Aligned_cols=134 Identities=13% Similarity=0.071 Sum_probs=78.1
Q ss_pred ChHHHHHHHHHHHHcCCCeeeCcCC----------cCCC--chHHHHHHHHhCC-CCCCeEEEeccCCcCCCCCCCCCCH
Q 028264 36 PEPDMIALIHHAINSGITLLDTSDI----------YGPY--TNEILVGKALKGG-MRERVELATKFGISFADGGKIRGDP 102 (211)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~DtA~~----------Yg~g--~~e~~lg~~l~~~-~R~~~~i~tK~~~~~~~~~~~~~~~ 102 (211)
++++..++.+.+.+.|+..+|.--. +|.. .+.+.+.+.++.. ..-++-|+.|+...+. .+.
T Consensus 75 ~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~------~~~ 148 (321)
T PRK10415 75 DPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWA------PEH 148 (321)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEcccc------CCc
Confidence 5677777788888899999994322 2211 2344444444431 1113457777754331 111
Q ss_pred HHHHHHHHHHhhHcCCCccceEeecCCCCCCCH--HHHHHHHHHHHHcCCccEEeccc-ccHHHHHHHhccCCeeEEccc
Q 028264 103 AYVRACCEASLKRLDIDCIDLYYQHRVDTKIPI--EVTIGELKKLVEEGKIKYIGLSE-ACAATIRRAHAVHPITAVQLE 179 (211)
Q Consensus 103 ~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~--~~~~~~l~~l~~~G~i~~iGvs~-~~~~~l~~~~~~~~~~~~q~~ 179 (211)
.... .+-+.++..|. |.+.+|........ ..-|+.+.++++.=.|--||... .+++...++++....+.+|+-
T Consensus 149 ~~~~-~~a~~le~~G~---d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmiG 224 (321)
T PRK10415 149 RNCV-EIAQLAEDCGI---QALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIG 224 (321)
T ss_pred chHH-HHHHHHHHhCC---CEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEEC
Confidence 1122 23344667774 66778875422111 12477888888876677787776 578888888876666777764
No 35
>PRK00208 thiG thiazole synthase; Reviewed
Probab=76.27 E-value=42 Score=27.56 Aligned_cols=79 Identities=15% Similarity=0.009 Sum_probs=60.2
Q ss_pred CCCCHHHHHHHHHHHhhHcCCCccceEeecCCCCC-CCHHHHHHHHHHHHHcCCccEEecccccHHHHHHHhccCCeeEE
Q 028264 98 IRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK-IPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPITAV 176 (211)
Q Consensus 98 ~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~-~~~~~~~~~l~~l~~~G~i~~iGvs~~~~~~l~~~~~~~~~~~~ 176 (211)
...+.++..+-.+-..+..+++++-|=.+..+... .++.+++++.++|.++|.+- +-+|+-++....++.+. .++++
T Consensus 71 G~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~v-lpyc~~d~~~ak~l~~~-G~~~v 148 (250)
T PRK00208 71 GCRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVV-LPYCTDDPVLAKRLEEA-GCAAV 148 (250)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHc-CCCEe
Confidence 34678888888888889999999988888776554 46789999999999999974 55777777777666655 34454
Q ss_pred cc
Q 028264 177 QL 178 (211)
Q Consensus 177 q~ 178 (211)
+-
T Consensus 149 mP 150 (250)
T PRK00208 149 MP 150 (250)
T ss_pred CC
Confidence 33
No 36
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=75.88 E-value=23 Score=30.63 Aligned_cols=61 Identities=16% Similarity=0.091 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHHHhhHcCCCccceEeecCCCCC------------CC-HH---HH-HHHHHHHHHcCCccEEecccccH
Q 028264 99 RGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK------------IP-IE---VT-IGELKKLVEEGKIKYIGLSEACA 161 (211)
Q Consensus 99 ~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~------------~~-~~---~~-~~~l~~l~~~G~i~~iGvs~~~~ 161 (211)
..+.+.+++.++..++ ++.+++.+|.+.--... .+ .+ +. ..+.+.|.+.|.. .+++|||..
T Consensus 166 gqt~~~~~~~l~~~~~-l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~-~yeis~fa~ 243 (370)
T PRK06294 166 TQSLSDFIVDLHQAIT-LPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGFT-RYELASYAK 243 (370)
T ss_pred CCCHHHHHHHHHHHHc-cCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCCC-eeeeeeeeC
Confidence 3577777777777664 77788887776531110 01 11 12 2344556677764 477887763
No 37
>COG1801 Uncharacterized conserved protein [Function unknown]
Probab=75.46 E-value=45 Score=27.57 Aligned_cols=108 Identities=11% Similarity=-0.015 Sum_probs=61.9
Q ss_pred cceecccccCCcCCCCCChHHHHHHHHHHHHcCCCeeeCcC-CcCCCchHHHHHHHHhCCCCCCeEEEeccCCcCCCCCC
Q 028264 19 AQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSD-IYGPYTNEILVGKALKGGMRERVELATKFGISFADGGK 97 (211)
Q Consensus 19 ~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~-~Yg~g~~e~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~ 97 (211)
.||++.|......|.--+++...+-.-+.+.+..|.++.-. .|.. .+++.+-++.++ ..+++..+.|.....+.
T Consensus 4 ~IG~sGW~~~~w~~~~yp~~~~~~~~L~~y~~~f~~VEiN~TFYa~-p~~~t~~~W~~~-~p~~FrFsvK~~~~iTH--- 78 (263)
T COG1801 4 YIGTSGWSYPDWEGLFYPEGLKKKEFLAYYASHFNTVEINSTFYAP-PSPETVLRWAEE-TPDDFRFSVKAPRAITH--- 78 (263)
T ss_pred EEeecCCCcccccccccCcccchhhHHHHHhccCCEEEECCcccCC-CCHHHHHHHHHh-CCCCeEEEEEecccccc---
Confidence 45666666644222212222222222334445566655333 4443 467777788876 78999999998755432
Q ss_pred CCCCH---HHHHHHHHHHhhHcCCCccceEeecCCCCC
Q 028264 98 IRGDP---AYVRACCEASLKRLDIDCIDLYYQHRVDTK 132 (211)
Q Consensus 98 ~~~~~---~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~ 132 (211)
..... ..+.+.+.+.++.|| +++..++++.|...
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~L~-~klg~il~Q~Ppsf 115 (263)
T COG1801 79 QRRLKECDFELWEFFLEPLAPLG-ERLGPILFQLPPSF 115 (263)
T ss_pred hhhhccchHHHHHHHHHHHHhhh-cccceEEEecCCcc
Confidence 11122 345555555566777 58999999998554
No 38
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=74.70 E-value=48 Score=27.51 Aligned_cols=133 Identities=13% Similarity=0.129 Sum_probs=80.1
Q ss_pred ChHHHHHHHHHHHHcCCCeeeCc----------CCcCCCchHHHHHHHHhCCCCC-CeEEEeccCCcCCCCCCCCCCHHH
Q 028264 36 PEPDMIALIHHAINSGITLLDTS----------DIYGPYTNEILVGKALKGGMRE-RVELATKFGISFADGGKIRGDPAY 104 (211)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~DtA----------~~Yg~g~~e~~lg~~l~~~~R~-~~~i~tK~~~~~~~~~~~~~~~~~ 104 (211)
+.++..++.+.+.+.|+..||.- ..|+ .+.+.+.+.++...+. ++-|..|+.+.. +.
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~--~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~----------~~ 167 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFG--TDPEAVAEIVKAVKKATDVPVIVKLTPNV----------TD 167 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCccccc--CCHHHHHHHHHHHHhccCCCEEEEeCCCc----------hh
Confidence 45677788888888999988862 1233 4566666666552222 577888986322 12
Q ss_pred HHHHHHHHhhHcCCCccceEe------ecCCCCC-------------CCHHHHHHHHHHHHHcCCccEEeccc-ccHHHH
Q 028264 105 VRACCEASLKRLDIDCIDLYY------QHRVDTK-------------IPIEVTIGELKKLVEEGKIKYIGLSE-ACAATI 164 (211)
Q Consensus 105 i~~~~~~sL~~Lg~~~lDl~~------lh~~~~~-------------~~~~~~~~~l~~l~~~G~i~~iGvs~-~~~~~l 164 (211)
+. .+-+.++..|.|.++++- +|..... ....-.++.+.++++.=.+--||... .+++.+
T Consensus 168 ~~-~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~da 246 (296)
T cd04740 168 IV-EIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGEDA 246 (296)
T ss_pred HH-HHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHHHH
Confidence 22 333456778877766541 1110000 00123567777777765677788887 478888
Q ss_pred HHHhccCCeeEEccccCc
Q 028264 165 RRAHAVHPITAVQLEWSL 182 (211)
Q Consensus 165 ~~~~~~~~~~~~q~~~~~ 182 (211)
.+++... .+.+|+-=.+
T Consensus 247 ~~~l~~G-Ad~V~igra~ 263 (296)
T cd04740 247 LEFLMAG-ASAVQVGTAN 263 (296)
T ss_pred HHHHHcC-CCEEEEchhh
Confidence 8888765 5888875443
No 39
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=74.66 E-value=24 Score=30.93 Aligned_cols=27 Identities=19% Similarity=0.111 Sum_probs=16.5
Q ss_pred CCHHHHHHHHHHHhhHcCCCccceEeec
Q 028264 100 GDPAYVRACCEASLKRLDIDCIDLYYQH 127 (211)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh 127 (211)
.+.+.+++.++..++ |+.+++.++.+.
T Consensus 179 qt~e~~~~tl~~~~~-l~p~~is~y~L~ 205 (400)
T PRK07379 179 QTLEDWQASLEAAIA-LNPTHLSCYDLV 205 (400)
T ss_pred CCHHHHHHHHHHHHc-CCCCEEEEecce
Confidence 466666666665543 566666666554
No 40
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=73.71 E-value=30 Score=30.87 Aligned_cols=61 Identities=16% Similarity=0.073 Sum_probs=41.3
Q ss_pred CCCHHHHHHHHHHHhhHcCCCccceEeecCCCC----------C--C--CHHH---H-HHHHHHHHHcCCccEEeccccc
Q 028264 99 RGDPAYVRACCEASLKRLDIDCIDLYYQHRVDT----------K--I--PIEV---T-IGELKKLVEEGKIKYIGLSEAC 160 (211)
Q Consensus 99 ~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~----------~--~--~~~~---~-~~~l~~l~~~G~i~~iGvs~~~ 160 (211)
..+.+.+++.++..++ ++.+++++|.+.-... . . +.++ . ..+.+.|.+.|.. .+++|||.
T Consensus 226 gqT~e~~~~~l~~~~~-l~~~~is~y~L~~~pgT~l~~~~~~g~l~~~~~~~~~~~my~~~~~~L~~~Gy~-~yeis~fa 303 (449)
T PRK09058 226 GQTPEIWQQDLAIVRD-LGLDGVDLYALNLLPGTPLAKAVEKGKLPPPATPAERADMYAYGVEFLAKAGWR-QLSNSHWA 303 (449)
T ss_pred CCCHHHHHHHHHHHHh-cCCCEEEEeccccCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHCCCe-EEeeeeee
Confidence 4688999998888765 8999999998874211 0 0 1122 2 3445567788875 58999986
Q ss_pred H
Q 028264 161 A 161 (211)
Q Consensus 161 ~ 161 (211)
-
T Consensus 304 r 304 (449)
T PRK09058 304 R 304 (449)
T ss_pred c
Confidence 4
No 41
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=73.53 E-value=25 Score=29.76 Aligned_cols=96 Identities=16% Similarity=0.181 Sum_probs=66.4
Q ss_pred HHHHhhHcCCCccceEeecCCCCC-----CCHHHHHHHHHHHHHcCCc-cEEeccc---ccHHHHHHHhcc-CCeeEEcc
Q 028264 109 CEASLKRLDIDCIDLYYQHRVDTK-----IPIEVTIGELKKLVEEGKI-KYIGLSE---ACAATIRRAHAV-HPITAVQL 178 (211)
Q Consensus 109 ~~~sL~~Lg~~~lDl~~lh~~~~~-----~~~~~~~~~l~~l~~~G~i-~~iGvs~---~~~~~l~~~~~~-~~~~~~q~ 178 (211)
.+.+.++.| .|++.+|-.... .+.+|..+.|+++.+.=++ --||=|. -+++.++++.+. -.=.|.-.
T Consensus 156 Ark~Vk~fg---admvTiHlIsTdPki~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEvaEGeRclLa 232 (403)
T COG2069 156 ARKCVKKFG---ADMVTIHLISTDPKIKDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVAEGERCLLA 232 (403)
T ss_pred HHHHHHHhC---CceEEEEeecCCccccCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhhcCceEEee
Confidence 344556677 588899987432 4678899999988887666 3477775 568889988876 22244444
Q ss_pred ccCccccCchhhHHHHHHhh-cCchhhhhhhh
Q 028264 179 EWSLWSRDVEAEIVPTCSDC-LGNLALELLRM 209 (211)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~~~-~~~i~~~~l~~ 209 (211)
..|+ +.+. ..+.++|.++ =.+++|+++.+
T Consensus 233 Sanl-dlDy-~~ia~AA~ky~H~VLswt~~D~ 262 (403)
T COG2069 233 SANL-DLDY-ERIAEAALKYDHVVLSWTQMDV 262 (403)
T ss_pred cccc-ccCH-HHHHHHHHhcCceEEEeeccCh
Confidence 4554 3333 4899999999 88888887754
No 42
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=71.94 E-value=12 Score=33.89 Aligned_cols=125 Identities=17% Similarity=0.125 Sum_probs=71.7
Q ss_pred HHHHHHHHcCCCeee--CcCCcC--------CCchHHHHHHHHhC----CCCCCeEEEeccCCcCCC--------C---C
Q 028264 42 ALIHHAINSGITLLD--TSDIYG--------PYTNEILVGKALKG----GMRERVELATKFGISFAD--------G---G 96 (211)
Q Consensus 42 ~~l~~A~~~Gin~~D--tA~~Yg--------~g~~e~~lg~~l~~----~~R~~~~i~tK~~~~~~~--------~---~ 96 (211)
+-.+...+.|+.-+= ||..|- .|.-|.++ .+-++ -.+.++|+++-++-.... | -
T Consensus 106 e~f~~l~~~GltmYGQMTAGsw~YIG~QGIvqGTyeT~~-~aark~~g~~L~Gk~~lTaGLGGMgGAQplA~~m~g~v~l 184 (546)
T PF01175_consen 106 EHFERLEALGLTMYGQMTAGSWIYIGPQGIVQGTYETFL-NAARKHFGGDLAGKLFLTAGLGGMGGAQPLAATMAGGVGL 184 (546)
T ss_dssp HHHHHHHHTT---B-TTTTTTT---TTHHHHHHHHHHHH-HHHHHHSTTS-TT-EEEEE--STTCCHHHHHHHHTT-EEE
T ss_pred HHHHHHHhccchhhccccccceEEEcccceeehhhHHHH-HHHHHhcCCCCcceEEEEecccccccchHHHHHhcCceEE
Confidence 335666677877443 444332 13445543 33333 347889999998743311 0 0
Q ss_pred CCCCCHHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCccEEecccccHHHHHHHhcc---CCe
Q 028264 97 KIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV---HPI 173 (211)
Q Consensus 97 ~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~iGvs~~~~~~l~~~~~~---~~~ 173 (211)
....++ ...-+|+.+.|+|.+ ..++++.++..++.+++|+..+||+-..-.+.++++++. ..+
T Consensus 185 ~vEvd~-------~ri~kR~~~g~ld~~-------~~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~~~i~pDl 250 (546)
T PF01175_consen 185 IVEVDP-------SRIEKRLEQGYLDEV-------TDDLDEALARAKEARAKKEPLSIGLLGNAADLWEELVERGIIPDL 250 (546)
T ss_dssp EEES-H-------HHHHHHHHTTSSSEE-------ESSHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHTT---SE
T ss_pred EEEECH-------HHHHHHHhCCCeeEE-------cCCHHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHHHcCCCCCc
Confidence 112233 334467778899886 356899999999999999999999998888999999887 457
Q ss_pred eEEccccC
Q 028264 174 TAVQLEWS 181 (211)
Q Consensus 174 ~~~q~~~~ 181 (211)
.+-|..+|
T Consensus 251 ~tDQTS~H 258 (546)
T PF01175_consen 251 VTDQTSAH 258 (546)
T ss_dssp E---SSTT
T ss_pred ccCCCccc
Confidence 77788775
No 43
>PRK05660 HemN family oxidoreductase; Provisional
Probab=71.88 E-value=32 Score=29.90 Aligned_cols=26 Identities=8% Similarity=-0.000 Sum_probs=12.1
Q ss_pred CCHHHHHHHHHHHhhHcCCCccceEee
Q 028264 100 GDPAYVRACCEASLKRLDIDCIDLYYQ 126 (211)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~l 126 (211)
.+.+.+.+.++..++ ++++++.+|.+
T Consensus 171 qt~~~~~~~l~~~~~-l~p~~is~y~l 196 (378)
T PRK05660 171 QSLEEALDDLRQAIA-LNPPHLSWYQL 196 (378)
T ss_pred CCHHHHHHHHHHHHh-cCCCeEEeecc
Confidence 344444444444333 45555554444
No 44
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=71.24 E-value=22 Score=28.33 Aligned_cols=72 Identities=15% Similarity=0.182 Sum_probs=50.1
Q ss_pred ChHHHHHHHHHHHHcCCCeeeCcCCcC-CCchHH---HHHHHHhCCCCCCeEEEeccCCcCCCCCCCCCCHHHHHHHHHH
Q 028264 36 PEPDMIALIHHAINSGITLLDTSDIYG-PYTNEI---LVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEA 111 (211)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg-~g~~e~---~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~ 111 (211)
++++...+.+.|.++|..|+=|+..|+ .|-+.+ .+.+.++ + -+..|..-.. .+.++..+-++.
T Consensus 130 ~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v~----~--~v~IKaaGGi-------rt~~~a~~~i~a 196 (211)
T TIGR00126 130 TDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTVG----D--TIGVKASGGV-------RTAEDAIAMIEA 196 (211)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHhc----c--CCeEEEeCCC-------CCHHHHHHHHHH
Confidence 557778999999999999999998886 343333 2334332 2 2344543322 368888888888
Q ss_pred HhhHcCCCc
Q 028264 112 SLKRLDIDC 120 (211)
Q Consensus 112 sL~~Lg~~~ 120 (211)
--.|+|+++
T Consensus 197 Ga~riGts~ 205 (211)
T TIGR00126 197 GASRIGASA 205 (211)
T ss_pred hhHHhCcch
Confidence 899999875
No 45
>PRK08609 hypothetical protein; Provisional
Probab=71.21 E-value=29 Score=32.01 Aligned_cols=143 Identities=13% Similarity=0.086 Sum_probs=76.6
Q ss_pred HHHHHHHHHHcCCCeeeCcCCcC-----CCchHHHHHHHH------hC-CCCCCeEEEeccCCcCCCCCCCCCCHHHHHH
Q 028264 40 MIALIHHAINSGITLLDTSDIYG-----PYTNEILVGKAL------KG-GMRERVELATKFGISFADGGKIRGDPAYVRA 107 (211)
Q Consensus 40 ~~~~l~~A~~~Gin~~DtA~~Yg-----~g~~e~~lg~~l------~~-~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~ 107 (211)
..++++.|.+.|+.++=.++|+. .|.+...+-..+ +. .+.=+++...-+.... +.+ ..
T Consensus 351 leemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l~~~~~~i~Il~GiEv~i~~------~g~----~d 420 (570)
T PRK08609 351 IEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKALNEKYPEIDILSGIEMDILP------DGS----LD 420 (570)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeecC------Ccc----hh
Confidence 56799999999999999888862 222333333222 22 1111233333332211 111 12
Q ss_pred HHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCccEEeccc---------c--cHHHHHHH-hccCCeeE
Q 028264 108 CCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSE---------A--CAATIRRA-HAVHPITA 175 (211)
Q Consensus 108 ~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~iGvs~---------~--~~~~l~~~-~~~~~~~~ 175 (211)
-.+..|+. .||+ +.-+|++- ..+.++.++.+.++.+.|.+--||=-. + ..+.+.++ .+.. .+
T Consensus 421 ~~~~~L~~--~D~v-I~SvH~~~-~~~~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G--~~ 494 (570)
T PRK08609 421 YDDEVLAE--LDYV-IAAIHSSF-SQSEEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETN--TA 494 (570)
T ss_pred hcHHHHHh--hCEE-EEEeecCC-CCCHHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHHHHHHHHhC--CE
Confidence 22224443 4554 66677642 235677888899998888887776433 1 11233333 2222 35
Q ss_pred EccccCccccCchhhHHHHHHhh
Q 028264 176 VQLEWSLWSRDVEAEIVPTCSDC 198 (211)
Q Consensus 176 ~q~~~~~~~~~~~~~l~~~~~~~ 198 (211)
+|++-+++.......++..|.+.
T Consensus 495 lEINa~~~r~~~~~~~~~~~~e~ 517 (570)
T PRK08609 495 LELNANPNRLDLSAEHLKKAQEA 517 (570)
T ss_pred EEEcCCccccCccHHHHHHHHHc
Confidence 55665555433335788888876
No 46
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=70.97 E-value=11 Score=33.77 Aligned_cols=65 Identities=15% Similarity=0.136 Sum_probs=45.2
Q ss_pred hhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCccEEecc-cccHHHHHHHhccCCeeEEccccC
Q 028264 113 LKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS-EACAATIRRAHAVHPITAVQLEWS 181 (211)
Q Consensus 113 L~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~iGvs-~~~~~~l~~~~~~~~~~~~q~~~~ 181 (211)
...+|.|++-+.+.....+..+.+..-+-...+. ++.+||- |-+++.+.++++..+++++|+.-+
T Consensus 273 a~~~GaD~lGfIf~~~SpR~V~~~~a~~i~~~l~----v~~VgVfv~~~~~~i~~i~~~~~lD~vQLHG~ 338 (454)
T PRK09427 273 AYDAGAVYGGLIFVEKSPRYVSLEQAQEIIAAAP----LRYVGVFRNADIEDIVDIAKQLSLAAVQLHGD 338 (454)
T ss_pred HHhCCCCEEeeEeCCCCCCCCCHHHHHHHHHhCC----CCEEEEEeCCCHHHHHHHHHHcCCCEEEeCCC
Confidence 4567888888875443334455544433333322 8889987 788899999999999999999764
No 47
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=70.13 E-value=13 Score=34.63 Aligned_cols=76 Identities=16% Similarity=0.171 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCccEEecc-cccHHHHHHHhccCCeeEEccc
Q 028264 101 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS-EACAATIRRAHAVHPITAVQLE 179 (211)
Q Consensus 101 ~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~iGvs-~~~~~~l~~~~~~~~~~~~q~~ 179 (211)
+.+.++.. ..+|+|++=+.+.....+..+.+.+...+.+......++.+||- |-+++.+.++.+...++++|+.
T Consensus 12 ~~eda~~a-----~~~gaD~iGfIf~~~SpR~V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~~~ld~vQLH 86 (610)
T PRK13803 12 DSALISKA-----VDMLPDFIGFIFYEKSPRFVGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKKNGIDFVQLH 86 (610)
T ss_pred cHHHHHHH-----HHcCCCEEEEEecCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEEC
Confidence 34555544 45899999888666555556666634444433333357789986 7889999999999999999997
Q ss_pred cC
Q 028264 180 WS 181 (211)
Q Consensus 180 ~~ 181 (211)
-+
T Consensus 87 G~ 88 (610)
T PRK13803 87 GA 88 (610)
T ss_pred CC
Confidence 54
No 48
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=70.09 E-value=70 Score=27.42 Aligned_cols=60 Identities=17% Similarity=0.057 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHhhHcCCCccceEeecC-CCC--------CCCHHHHH-HHHHHHHHcCCccEEecccccH
Q 028264 100 GDPAYVRACCEASLKRLDIDCIDLYYQHR-VDT--------KIPIEVTI-GELKKLVEEGKIKYIGLSEACA 161 (211)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~-~~~--------~~~~~~~~-~~l~~l~~~G~i~~iGvs~~~~ 161 (211)
.+.+.+++.++..+ .++.+++.++.+.- |.. ..+.++.+ .+.+.|.+.|.. .+++|||.-
T Consensus 162 qt~~~~~~~l~~~~-~l~~~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~l~~~Gy~-~yeis~fa~ 231 (350)
T PRK08446 162 DNKKLLKEELKLAK-ELPINHLSAYSLTIEENTPFFEKNHKKKDDENLAKFFIEQLEELGFK-QYEISNFGK 231 (350)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEeccceecCCChhHHhhhcCCCHHHHHHHHHHHHHHCCCc-EEEeehhhC
Confidence 56666766665544 46777777666543 110 01112232 334455556753 577777654
No 49
>PLN02363 phosphoribosylanthranilate isomerase
Probab=70.06 E-value=14 Score=30.44 Aligned_cols=74 Identities=22% Similarity=0.193 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCccEEecc-cccHHHHHHHhccCCeeEEccc
Q 028264 101 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS-EACAATIRRAHAVHPITAVQLE 179 (211)
Q Consensus 101 ~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~iGvs-~~~~~~l~~~~~~~~~~~~q~~ 179 (211)
+.++++.+. ++|.|++-+.+.....+..+.+.+-+.... .....++.+||. |-+++.+.++++..+++++|+.
T Consensus 56 ~~eda~~a~-----~~GaD~iGfIf~~~SpR~Vs~e~a~~I~~~-l~~~~~~~VgVfv~~~~~~I~~~~~~~~ld~VQLH 129 (256)
T PLN02363 56 SARDAAMAV-----EAGADFIGMILWPKSKRSISLSVAKEISQV-AREGGAKPVGVFVDDDANTILRAADSSDLELVQLH 129 (256)
T ss_pred cHHHHHHHH-----HcCCCEEEEecCCCCCCcCCHHHHHHHHHh-ccccCccEEEEEeCCCHHHHHHHHHhcCCCEEEEC
Confidence 456665554 589999888754433344544444433333 332246679986 7889999999999999999997
Q ss_pred c
Q 028264 180 W 180 (211)
Q Consensus 180 ~ 180 (211)
-
T Consensus 130 G 130 (256)
T PLN02363 130 G 130 (256)
T ss_pred C
Confidence 4
No 50
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=69.82 E-value=61 Score=26.66 Aligned_cols=25 Identities=12% Similarity=0.158 Sum_probs=21.6
Q ss_pred CChHHHHHHHHHHHHcCCCeeeCcC
Q 028264 35 EPEPDMIALIHHAINSGITLLDTSD 59 (211)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gin~~DtA~ 59 (211)
.+.++..++++...+.|+..++...
T Consensus 19 ~s~~~k~~i~~~L~~~Gv~~IEvG~ 43 (262)
T cd07948 19 FDTEDKIEIAKALDAFGVDYIELTS 43 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEC
Confidence 4668889999999999999999864
No 51
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=69.36 E-value=9.4 Score=32.73 Aligned_cols=133 Identities=17% Similarity=0.178 Sum_probs=76.7
Q ss_pred ChHHHHHHHHHHHHcC-CCeeeCcCCcCCCchHHHHHHHHhCCC-CCCeEEEeccCCcCCCCCCCCCCHHHHHHHHHHHh
Q 028264 36 PEPDMIALIHHAINSG-ITLLDTSDIYGPYTNEILVGKALKGGM-RERVELATKFGISFADGGKIRGDPAYVRACCEASL 113 (211)
Q Consensus 36 ~~~~~~~~l~~A~~~G-in~~DtA~~Yg~g~~e~~lg~~l~~~~-R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL 113 (211)
+.+++.+.-+.|-+.| .+|...|..++.|+.-..+-++++.+. --.+-+..-+| ..+.++.. -|
T Consensus 85 ~~eeIle~Ak~ak~~Ga~r~c~~aagr~~~~~~~~i~~~v~~Vk~~~~le~c~slG---------~l~~eq~~-----~L 150 (335)
T COG0502 85 EVEEILEAAKKAKAAGATRFCMGAAGRGPGRDMEEVVEAIKAVKEELGLEVCASLG---------MLTEEQAE-----KL 150 (335)
T ss_pred CHHHHHHHHHHHHHcCCceEEEEEeccCCCccHHHHHHHHHHHHHhcCcHHhhccC---------CCCHHHHH-----HH
Confidence 5676777777778899 888888888863344444445554421 11122222222 13344333 34
Q ss_pred hHcCCCccceEeecCCC----------CCCCHHHHHHHHHHHHHcCCccE----EecccccHHHHHHHhcc--CCeeEEc
Q 028264 114 KRLDIDCIDLYYQHRVD----------TKIPIEVTIGELKKLVEEGKIKY----IGLSEACAATIRRAHAV--HPITAVQ 177 (211)
Q Consensus 114 ~~Lg~~~lDl~~lh~~~----------~~~~~~~~~~~l~~l~~~G~i~~----iGvs~~~~~~l~~~~~~--~~~~~~q 177 (211)
+.-|+++ +-|+.+ +..++++-++.++.+++.|.--+ +|+.+...+.+.-+... .+. ...
T Consensus 151 ~~aGvd~----ynhNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~-pds 225 (335)
T COG0502 151 ADAGVDR----YNHNLETSPEFYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANLPT-PDS 225 (335)
T ss_pred HHcChhh----eecccccCHHHHcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHHHHHHHHHHhCCC-CCe
Confidence 5556553 344432 34468999999999999997655 45555545544444333 231 555
Q ss_pred cccCccccCc
Q 028264 178 LEWSLWSRDV 187 (211)
Q Consensus 178 ~~~~~~~~~~ 187 (211)
+++|++++.+
T Consensus 226 VPIn~l~P~~ 235 (335)
T COG0502 226 VPINFLNPIP 235 (335)
T ss_pred eeeeeecCCC
Confidence 7777777753
No 52
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=69.36 E-value=46 Score=27.47 Aligned_cols=79 Identities=13% Similarity=0.011 Sum_probs=52.6
Q ss_pred ChH-HHHHHHHHHHHcCCCeeeCcCCcCC-CchHH---HHHHHHhCCCCCCeEEEeccCCcCCCCCCCCCCHHHHHHHHH
Q 028264 36 PEP-DMIALIHHAINSGITLLDTSDIYGP-YTNEI---LVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCE 110 (211)
Q Consensus 36 ~~~-~~~~~l~~A~~~Gin~~DtA~~Yg~-g~~e~---~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~ 110 (211)
+++ +..++.+.|+++|..|+=|+..|+. |-+.+ ++-+.+++. ...--+.-|..-.. .+.++..+-++
T Consensus 144 ~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~-~~~~~vgIKAsGGI-------rt~~~A~~~i~ 215 (257)
T PRK05283 144 KDEALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDM-GVAKTVGFKPAGGV-------RTAEDAAQYLA 215 (257)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhc-ccCCCeeEEccCCC-------CCHHHHHHHHH
Confidence 445 4888999999999999999999974 43333 233333221 00112455554333 46888888899
Q ss_pred HHhhHcCCCccc
Q 028264 111 ASLKRLDIDCID 122 (211)
Q Consensus 111 ~sL~~Lg~~~lD 122 (211)
..-+.||.+|++
T Consensus 216 ag~~~lg~~~~~ 227 (257)
T PRK05283 216 LADEILGADWAD 227 (257)
T ss_pred HHHHHhChhhcC
Confidence 898999988765
No 53
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=69.34 E-value=61 Score=26.47 Aligned_cols=117 Identities=11% Similarity=0.071 Sum_probs=60.1
Q ss_pred CCChHHHHHHHHHHHHcCCCeeeCcCC-----------cCCCchHHHHHHHHhCCCCCCeEEEeccCCcCCCCCCCCCCH
Q 028264 34 PEPEPDMIALIHHAINSGITLLDTSDI-----------YGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDP 102 (211)
Q Consensus 34 ~~~~~~~~~~l~~A~~~Gin~~DtA~~-----------Yg~g~~e~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~ 102 (211)
..+.++..++++...+.|+..++.+.. |..-..++.+.+..+..+..++....- ..+ ...
T Consensus 18 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~--~~~-------~~~ 88 (263)
T cd07943 18 QFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLL--PGI-------GTV 88 (263)
T ss_pred ecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEec--CCc-------cCH
Confidence 347788999999999999999999721 211134455544443333333332221 111 123
Q ss_pred HHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCccEEecc---cccHHHHHHHhc
Q 028264 103 AYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS---EACAATIRRAHA 169 (211)
Q Consensus 103 ~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~iGvs---~~~~~~l~~~~~ 169 (211)
+.+ +.+++ .|++.+-++.- ..+.....+.++..++.|.--.+.++ .++++.+.++.+
T Consensus 89 ~~i----~~a~~-~g~~~iri~~~-----~s~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~ 148 (263)
T cd07943 89 DDL----KMAAD-LGVDVVRVATH-----CTEADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAK 148 (263)
T ss_pred HHH----HHHHH-cCCCEEEEEec-----hhhHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHH
Confidence 333 33332 25555444321 11234566677777777765444442 244555544443
No 54
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=69.13 E-value=40 Score=26.38 Aligned_cols=147 Identities=10% Similarity=-0.005 Sum_probs=73.5
Q ss_pred ChHHHHHHHHHHHHcCCCeeeCcCCcCCCchHHHHHHHHhCCCCCCeEEEeccCCcCCCCCCCCCCHHHHHHHHHHHhhH
Q 028264 36 PEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKR 115 (211)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~~e~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~ 115 (211)
+.+++.++++.|++.|++..|.-...= -..-..+|+.. .+++++++--. ...+.+++.++.....
T Consensus 10 d~~~~~~~v~~~l~~g~~~~~i~~~~l-~p~m~~iG~~w---~~gei~va~~~-----------~a~~~~~~~l~~l~~~ 74 (197)
T TIGR02370 10 EEDDVVEGAQKALDAGIDPIELIEKGL-MAGMGVVGKLF---EDGELFLPHVM-----------MSADAMLAGIKVLTPE 74 (197)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHHH---cCCCccHHHHH-----------HHHHHHHHHHHHHHHH
Confidence 778899999999999988665431110 01222344433 33444432211 2244455555555554
Q ss_pred cCCC----ccceEeecCCCCCCCHHHHHHHHHHHHHcCC-ccEEecccccHHHHHHHhccCCeeEEccccCccccC-chh
Q 028264 116 LDID----CIDLYYQHRVDTKIPIEVTIGELKKLVEEGK-IKYIGLSEACAATIRRAHAVHPITAVQLEWSLWSRD-VEA 189 (211)
Q Consensus 116 Lg~~----~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~-i~~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~ 189 (211)
+... .---+++-.+..+.+--...=.-.-++..|. +.++|. +.+.+.+.+.+...+|+++.+.++...+. ...
T Consensus 75 ~~~~~~~~~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~-~vp~e~~v~~~~~~~pd~v~lS~~~~~~~~~~~ 153 (197)
T TIGR02370 75 MEKAVETEVLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGR-DVPIDTVVEKVKKEKPLMLTGSALMTTTMYGQK 153 (197)
T ss_pred hhccccCCCCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCC-CCCHHHHHHHHHHcCCCEEEEccccccCHHHHH
Confidence 4321 1112333443333222222222223344554 344553 44666777777777778877777654443 123
Q ss_pred hHHHHHHhh
Q 028264 190 EIVPTCSDC 198 (211)
Q Consensus 190 ~l~~~~~~~ 198 (211)
++++.+++.
T Consensus 154 ~~i~~l~~~ 162 (197)
T TIGR02370 154 DINDKLKEE 162 (197)
T ss_pred HHHHHHHHc
Confidence 555555554
No 55
>PRK07094 biotin synthase; Provisional
Probab=68.02 E-value=35 Score=28.69 Aligned_cols=116 Identities=16% Similarity=0.134 Sum_probs=62.8
Q ss_pred ChHHHHHHHHHHHHcCCCeeeCc----CCcCCCchHHHHHHHHhCCCC-CCeEEEeccCCcCCCCCCCCCCHHHHHHHHH
Q 028264 36 PEPDMIALIHHAINSGITLLDTS----DIYGPYTNEILVGKALKGGMR-ERVELATKFGISFADGGKIRGDPAYVRACCE 110 (211)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~DtA----~~Yg~g~~e~~lg~~l~~~~R-~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~ 110 (211)
+.++..+.++.+.+.|++.|--. ..|. .+.+-+.++.+.. .++.+..-.+ . .+.+.+
T Consensus 71 s~eei~~~~~~~~~~g~~~i~l~gG~~~~~~----~~~l~~l~~~i~~~~~l~i~~~~g--~-------~~~e~l----- 132 (323)
T PRK07094 71 SPEEILECAKKAYELGYRTIVLQSGEDPYYT----DEKIADIIKEIKKELDVAITLSLG--E-------RSYEEY----- 132 (323)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCCCCC----HHHHHHHHHHHHccCCceEEEecC--C-------CCHHHH-----
Confidence 67788888888899999877432 1222 2334444444222 3443332111 1 233332
Q ss_pred HHhhHcCCCccceEeecC--------CCCCCCHHHHHHHHHHHHHcCCccE----EecccccHHHHHHHhcc
Q 028264 111 ASLKRLDIDCIDLYYQHR--------VDTKIPIEVTIGELKKLVEEGKIKY----IGLSEACAATIRRAHAV 170 (211)
Q Consensus 111 ~sL~~Lg~~~lDl~~lh~--------~~~~~~~~~~~~~l~~l~~~G~i~~----iGvs~~~~~~l~~~~~~ 170 (211)
+.|+..|++.+-+ -+.. .....+.++.+++++.+++.|.--. +|+...+.+.+.+.+..
T Consensus 133 ~~Lk~aG~~~v~~-glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~~ 203 (323)
T PRK07094 133 KAWKEAGADRYLL-RHETADKELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDILF 203 (323)
T ss_pred HHHHHcCCCEEEe-ccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHHH
Confidence 2455567654431 1111 1223457889999999999996322 56656666666555443
No 56
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=67.76 E-value=74 Score=26.82 Aligned_cols=134 Identities=11% Similarity=0.060 Sum_probs=77.5
Q ss_pred ChHHHHHHHHHHHHcCCCeeeCcC---------CcCCC---chHHHHHHHHhCC-CCCCeEEEeccCCcCCCCCCCCCCH
Q 028264 36 PEPDMIALIHHAINSGITLLDTSD---------IYGPY---TNEILVGKALKGG-MRERVELATKFGISFADGGKIRGDP 102 (211)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~DtA~---------~Yg~g---~~e~~lg~~l~~~-~R~~~~i~tK~~~~~~~~~~~~~~~ 102 (211)
++++..++.+.+.++|+..+|.-- .|+.. ...+.+.+.++.+ ..-++-|+.|+...+. ...
T Consensus 73 ~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~------~~~ 146 (319)
T TIGR00737 73 DPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWD------DAH 146 (319)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccC------CCc
Confidence 567788888888899998888532 12211 1334555555542 1223557888753331 111
Q ss_pred HHHHHHHHHHhhHcCCCccceEeecCCCCCC--CHHHHHHHHHHHHHcCCccEEeccc-ccHHHHHHHhccCCeeEEccc
Q 028264 103 AYVRACCEASLKRLDIDCIDLYYQHRVDTKI--PIEVTIGELKKLVEEGKIKYIGLSE-ACAATIRRAHAVHPITAVQLE 179 (211)
Q Consensus 103 ~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~--~~~~~~~~l~~l~~~G~i~~iGvs~-~~~~~l~~~~~~~~~~~~q~~ 179 (211)
..+ ..+-+.|+..|+ |.+.+|...... +-...|+.+.++++.=.+--|+... .+++.+.++++....+.+|+-
T Consensus 147 ~~~-~~~a~~l~~~G~---d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~Vmig 222 (319)
T TIGR00737 147 INA-VEAARIAEDAGA---QAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMIG 222 (319)
T ss_pred chH-HHHHHHHHHhCC---CEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEEC
Confidence 112 234555677785 556667542211 1123477777887765566677665 567888888866556666664
No 57
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=67.75 E-value=63 Score=27.53 Aligned_cols=133 Identities=14% Similarity=0.086 Sum_probs=85.7
Q ss_pred ChHHHHHHHHHHHHcCCCeeeCc----------CCcCCC--chHHHHHHHHhCC-CCC-CeEEEeccCCcCCCCCCCCCC
Q 028264 36 PEPDMIALIHHAINSGITLLDTS----------DIYGPY--TNEILVGKALKGG-MRE-RVELATKFGISFADGGKIRGD 101 (211)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~DtA----------~~Yg~g--~~e~~lg~~l~~~-~R~-~~~i~tK~~~~~~~~~~~~~~ 101 (211)
+++...+.-+.+.+.|+..||-- ..+|.+ .+...+.+.++.. .-- ++-|+.|+-..+. .
T Consensus 77 dp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d-------~ 149 (323)
T COG0042 77 DPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWD-------D 149 (323)
T ss_pred CHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecccC-------c
Confidence 56778888999999999999833 222322 4566677777661 111 6789999866552 1
Q ss_pred HHHHHHHHHHHhhHcCCCccceEeecCCCCCCCH--HHHHHHHHHHHHcCC-ccEEeccc-ccHHHHHHHhccCCeeEEc
Q 028264 102 PAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPI--EVTIGELKKLVEEGK-IKYIGLSE-ACAATIRRAHAVHPITAVQ 177 (211)
Q Consensus 102 ~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~--~~~~~~l~~l~~~G~-i~~iGvs~-~~~~~l~~~~~~~~~~~~q 177 (211)
.+.....+.+.++.-| +|.+.+|........ ..-|+.+.++++.=. +--||=.+ ++++...+.++....+-++
T Consensus 150 ~~~~~~~ia~~~~~~g---~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVM 226 (323)
T COG0042 150 DDILALEIARILEDAG---ADALTVHGRTRAQGYLGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVM 226 (323)
T ss_pred ccccHHHHHHHHHhcC---CCEEEEecccHHhcCCCccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEE
Confidence 2234445666777777 578999986432211 145888888887655 54455444 7888888888876556665
Q ss_pred c
Q 028264 178 L 178 (211)
Q Consensus 178 ~ 178 (211)
+
T Consensus 227 i 227 (323)
T COG0042 227 I 227 (323)
T ss_pred E
Confidence 5
No 58
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=66.88 E-value=54 Score=26.48 Aligned_cols=123 Identities=13% Similarity=0.054 Sum_probs=64.8
Q ss_pred CCChHHHHHHHHHHHHcCCCeeeCcCCcCCC---chHHHHHHHHhC--------------CCCCCeEEEeccCCcCCCC-
Q 028264 34 PEPEPDMIALIHHAINSGITLLDTSDIYGPY---TNEILVGKALKG--------------GMRERVELATKFGISFADG- 95 (211)
Q Consensus 34 ~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g---~~e~~lg~~l~~--------------~~R~~~~i~tK~~~~~~~~- 95 (211)
+.+.++..++++.|.++|++-+=..++|-.| ..++.+.+.+.+ .|..+++|.--.--....+
T Consensus 16 p~s~eesl~ml~~A~~qGvt~iVaTsHh~~g~y~n~~~~v~~~~~~ln~~~~~~aidl~v~pGQEIrIt~~vl~~l~~g~ 95 (254)
T COG4464 16 PKSLEESLAMLREAVRQGVTKIVATSHHLHGRYENPIEKVKEKANQLNEILKKEAIDLKVLPGQEIRITGDVLDDLDKGI 95 (254)
T ss_pred CCcHHHHHHHHHHHHHcCceEEeecccccCCccCChHHHHHHHHHHHHHHHHhhcCCceeccCceEEEchHHHHHHhcCc
Confidence 3477889999999999999977766677554 244444444433 3456666654321111000
Q ss_pred ---------CCCCCCHHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCccEEecc
Q 028264 96 ---------GKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS 157 (211)
Q Consensus 96 ---------~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~iGvs 157 (211)
-...++...+-+..++.+-.|...-+== .+..|++...+.+-...+.+|++.|---.+--|
T Consensus 96 I~tindskYlLIEF~~~~v~~ya~~lf~elq~kGi~P-IIAHPERn~~i~kn~~~lyeLid~ga~sQvts~ 165 (254)
T COG4464 96 ILTINDSKYLLIEFPMNHVPRYADQLFFELQSKGIIP-IIAHPERNRAIQKNPYLLYELIDKGAYSQVTSS 165 (254)
T ss_pred cccccccceEEEEccCCcchhhHHHHHHHHHHCCcee-eeechhhHHHHHhChHHHHHHHhcccceeechH
Confidence 0011233333334444443332111111 123345555556667777788888876555444
No 59
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=66.05 E-value=69 Score=25.80 Aligned_cols=27 Identities=7% Similarity=0.100 Sum_probs=22.7
Q ss_pred CChHHHHHHHHHHHHcCCCeeeCcCCc
Q 028264 35 EPEPDMIALIHHAINSGITLLDTSDIY 61 (211)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gin~~DtA~~Y 61 (211)
.+.++..++++...+.|+..++....-
T Consensus 16 ~s~e~~~~i~~~L~~~GV~~IEvg~~~ 42 (265)
T cd03174 16 FSTEDKLEIAEALDEAGVDSIEVGSGA 42 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeccCc
Confidence 467889999999999999999977543
No 60
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=65.40 E-value=30 Score=27.96 Aligned_cols=82 Identities=16% Similarity=0.058 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcC-CccEEecccccHHHHHHHhccCCeeEEcc
Q 028264 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEG-KIKYIGLSEACAATIRRAHAVHPITAVQL 178 (211)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G-~i~~iGvs~~~~~~l~~~~~~~~~~~~q~ 178 (211)
++.+...+-++ .|..+|++++++-..-.+......+..++.++++.+.+ .++...++.-..+.++++.+.. ++.+++
T Consensus 16 ~s~e~~~~i~~-~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g-~~~i~i 93 (265)
T cd03174 16 FSTEDKLEIAE-ALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAG-VDEVRI 93 (265)
T ss_pred CCHHHHHHHHH-HHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCC-cCEEEE
Confidence 45555555444 47788988888875554322212245788888888888 5666566665566677776653 455555
Q ss_pred ccCcc
Q 028264 179 EWSLW 183 (211)
Q Consensus 179 ~~~~~ 183 (211)
.+..-
T Consensus 94 ~~~~s 98 (265)
T cd03174 94 FDSAS 98 (265)
T ss_pred EEecC
Confidence 55443
No 61
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=65.26 E-value=47 Score=25.97 Aligned_cols=147 Identities=13% Similarity=0.019 Sum_probs=68.6
Q ss_pred ChHHHHHHHHHHHHcCCCeeeCcCCcCCCchHHHHHHHHhCCCCCCeEEEeccCCcCCCCCCCCCCHHHHHHHHHHHhhH
Q 028264 36 PEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKR 115 (211)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~~e~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~ 115 (211)
|++++.++++.+++.|+...|.-...= -..-..+|+.. .+++++++.-. ...+.+++.+......
T Consensus 9 D~~~~~~~v~~~l~~g~~~~~i~~~~l-~p~m~~vG~~w---~~~~i~va~e~-----------~as~~~~~~l~~l~~~ 73 (201)
T cd02070 9 DEEETVELVKKALEAGIDPQDIIEEGL-APGMDIVGDKY---EEGEIFVPELL-----------MAADAMKAGLDLLKPL 73 (201)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHHH---ccCCeeHHHHH-----------HHHHHHHHHHHHHHHH
Confidence 678899999999999976444321100 01222244433 33444433221 1233344444444443
Q ss_pred cCCCc---cceEeecCCCCCCCHHHHHHHHHHHHHcCCc-cEEecccccHHHHHHHhccCCeeEEccccCccccC-chhh
Q 028264 116 LDIDC---IDLYYQHRVDTKIPIEVTIGELKKLVEEGKI-KYIGLSEACAATIRRAHAVHPITAVQLEWSLWSRD-VEAE 190 (211)
Q Consensus 116 Lg~~~---lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i-~~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~ 190 (211)
+.... ---+++..+..+.+--...=.-.-++..|+= .++| .+.+.+.+.+.+...+|+++-+.++....- ....
T Consensus 74 ~~~~~~~~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG-~~~p~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~ 152 (201)
T cd02070 74 LGKSKSAKKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLG-RDVPPEEFVEAVKEHKPDILGLSALMTTTMGGMKE 152 (201)
T ss_pred HhhcCCCCCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECC-CCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHH
Confidence 43221 1123334433222221122222234455653 4455 455666666666666677777666554432 1234
Q ss_pred HHHHHHhh
Q 028264 191 IVPTCSDC 198 (211)
Q Consensus 191 l~~~~~~~ 198 (211)
+++..++.
T Consensus 153 ~i~~lr~~ 160 (201)
T cd02070 153 VIEALKEA 160 (201)
T ss_pred HHHHHHHC
Confidence 55555543
No 62
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=64.79 E-value=30 Score=26.27 Aligned_cols=73 Identities=14% Similarity=0.125 Sum_probs=47.4
Q ss_pred ChHHHHHHHHHHHHcCCCeeeCcCCcCCCchHHHHHHHHhCCCCCCeEEEec-cCCcCCCCCCCCCCHHHHHHHHHHHhh
Q 028264 36 PEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATK-FGISFADGGKIRGDPAYVRACCEASLK 114 (211)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~~e~~lg~~l~~~~R~~~~i~tK-~~~~~~~~~~~~~~~~~i~~~~~~sL~ 114 (211)
.++...-+++.|-+.||.+|=.|..|| .+-..+-+.+.. . =++++.|. .+... .....+.+.+++-|+
T Consensus 12 T~~tle~a~erA~elgik~~vVAS~tG--~tA~k~lemveg-~-lkvVvVthh~Gf~e-------~g~~e~~~E~~~~L~ 80 (186)
T COG1751 12 TDETLEIAVERAKELGIKHIVVASSTG--YTALKALEMVEG-D-LKVVVVTHHAGFEE-------KGTQEMDEEVRKELK 80 (186)
T ss_pred hHHHHHHHHHHHHhcCcceEEEEeccc--HHHHHHHHhccc-C-ceEEEEEeeccccc-------CCceecCHHHHHHHH
Confidence 445556677888889999999999999 555544454422 2 23554444 44443 234556777888888
Q ss_pred HcCCC
Q 028264 115 RLDID 119 (211)
Q Consensus 115 ~Lg~~ 119 (211)
..|.+
T Consensus 81 erGa~ 85 (186)
T COG1751 81 ERGAK 85 (186)
T ss_pred HcCce
Confidence 88853
No 63
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=64.77 E-value=2.9 Score=36.26 Aligned_cols=53 Identities=11% Similarity=0.226 Sum_probs=36.4
Q ss_pred cCCccEEecccccHHHHHHHhccC-CeeEEccccCccccCchhhHHHHHHhh-cC
Q 028264 148 EGKIKYIGLSEACAATIRRAHAVH-PITAVQLEWSLWSRDVEAEIVPTCSDC-LG 200 (211)
Q Consensus 148 ~G~i~~iGvs~~~~~~l~~~~~~~-~~~~~q~~~~~~~~~~~~~l~~~~~~~-~~ 200 (211)
-|+||++||-=++++.++++.+.. .-++.+....++.....+.+++.|++. |.
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~e~dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTENEKDLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCccHHHHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 399999999999999999998772 223333444443333345788888776 44
No 64
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=64.74 E-value=79 Score=26.03 Aligned_cols=25 Identities=12% Similarity=0.094 Sum_probs=21.5
Q ss_pred CChHHHHHHHHHHHHcCCCeeeCcC
Q 028264 35 EPEPDMIALIHHAINSGITLLDTSD 59 (211)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gin~~DtA~ 59 (211)
.+.++..++.+..-++||..++...
T Consensus 17 f~~~~~~~ia~~L~~~GVd~IEvG~ 41 (266)
T cd07944 17 FGDEFVKAIYRALAAAGIDYVEIGY 41 (266)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEeec
Confidence 4668889999998899999999874
No 65
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=64.49 E-value=41 Score=30.00 Aligned_cols=60 Identities=17% Similarity=0.129 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHHHhhHcCCCccceEeec-CCCC-----------CCCHHHH----HHHHHHHHHcCCccEEecccccH
Q 028264 100 GDPAYVRACCEASLKRLDIDCIDLYYQH-RVDT-----------KIPIEVT----IGELKKLVEEGKIKYIGLSEACA 161 (211)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh-~~~~-----------~~~~~~~----~~~l~~l~~~G~i~~iGvs~~~~ 161 (211)
.+.+.+.+.++..+ .++.+++.+|.+- .|.. ..+.++. ..+.+.|.+.|.. .+|+++|.-
T Consensus 216 qt~e~~~~tl~~~~-~l~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~-~~~~~~far 291 (453)
T PRK13347 216 QTVESFRETLDKVI-ALSPDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGYV-PIGLDHFAL 291 (453)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCCE-EEeccceeC
Confidence 67888888888776 5888888888662 2320 0112222 3455677788875 489999874
No 66
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=64.23 E-value=45 Score=24.76 Aligned_cols=63 Identities=6% Similarity=0.173 Sum_probs=45.9
Q ss_pred CCCCeEEEeccCCcCCCCCCCCCCHHHHHHHHHHHhhHc--CCCccceEeecCCCCCCCHHHHHHHHHHHHHc
Q 028264 78 MRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRL--DIDCIDLYYQHRVDTKIPIEVTIGELKKLVEE 148 (211)
Q Consensus 78 ~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~L--g~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~ 148 (211)
+|=.+.|+-|++. . ..+..|++.++++++.. .....|++++.......+++++.+.|.++.++
T Consensus 46 ~RlG~sVSKKvg~-A-------V~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~~~f~~L~~~l~~~~~~ 110 (138)
T PRK00730 46 CKVGITVSKKFGK-A-------HQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQPDFLKLLQDFLQQIPE 110 (138)
T ss_pred ceEEEEEeccccc-c-------hhHHHHHHHHHHHHHHhhcccCCceEEEEeccccCCCHHHHHHHHHHHHHH
Confidence 4666778888763 2 45777888888887765 33568999999987777778877777766654
No 67
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=64.10 E-value=66 Score=27.77 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=18.4
Q ss_pred CCHHHHHHHHHHHhhHcCCCccceEeec
Q 028264 100 GDPAYVRACCEASLKRLDIDCIDLYYQH 127 (211)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh 127 (211)
.+.+.+++.++..+ .++.+++.+|.+.
T Consensus 172 qt~~~~~~tl~~~~-~l~~~~i~~y~l~ 198 (375)
T PRK05628 172 ESDDDWRASLDAAL-EAGVDHVSAYALI 198 (375)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEeeeee
Confidence 56777777776554 4777777777665
No 68
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=63.64 E-value=47 Score=27.26 Aligned_cols=99 Identities=18% Similarity=0.082 Sum_probs=58.0
Q ss_pred CCHHHHHHHHHHHhhHcCCCccceEee-cCCCCC-CCHH----HHHHHHHHHHHcCCccEEecccccHHHHHHHhccCCe
Q 028264 100 GDPAYVRACCEASLKRLDIDCIDLYYQ-HRVDTK-IPIE----VTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPI 173 (211)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~l-h~~~~~-~~~~----~~~~~l~~l~~~G~i~~iGvs~~~~~~l~~~~~~~~~ 173 (211)
.+.+.+.+..++.+ .-|.+.+|+--. .+|+.. .+.+ .+...++.+++.-.+- +.+-+++++.++++++....
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~G~~ 98 (257)
T cd00739 21 LSLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVL-ISVDTFRAEVARAALEAGAD 98 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHhCCC
Confidence 34555555544443 448888998632 234332 2333 3344456666553333 78888999999999988643
Q ss_pred eEEccccCccccCchhhHHHHHHhh-cCchhh
Q 028264 174 TAVQLEWSLWSRDVEAEIVPTCSDC-LGNLAL 204 (211)
Q Consensus 174 ~~~q~~~~~~~~~~~~~l~~~~~~~-~~~i~~ 204 (211)
-++- .+..... +.+++.++++ ..++.+
T Consensus 99 iINd--isg~~~~--~~~~~l~~~~~~~vV~m 126 (257)
T cd00739 99 IIND--VSGGSDD--PAMLEVAAEYGAPLVLM 126 (257)
T ss_pred EEEe--CCCCCCC--hHHHHHHHHcCCCEEEE
Confidence 3332 3333222 4788888888 666653
No 69
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=63.55 E-value=21 Score=30.09 Aligned_cols=133 Identities=13% Similarity=0.104 Sum_probs=76.4
Q ss_pred ChHHHHHHHHHHHHcCCCeee----------CcCCcCCC--chHHHHHHHHhCCC-CCCeEEEeccCCcCCCCCCCCCCH
Q 028264 36 PEPDMIALIHHAINSGITLLD----------TSDIYGPY--TNEILVGKALKGGM-RERVELATKFGISFADGGKIRGDP 102 (211)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~D----------tA~~Yg~g--~~e~~lg~~l~~~~-R~~~~i~tK~~~~~~~~~~~~~~~ 102 (211)
+++...++.+.+.+.|+..|| +...+|.+ .+...+.+.++... .-++-|+.|+-..+ +.+.
T Consensus 64 ~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~------~~~~ 137 (309)
T PF01207_consen 64 DPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGW------DDSP 137 (309)
T ss_dssp -HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESEC------T--C
T ss_pred cHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEeccccc------ccch
Confidence 667788888888888999999 33445533 34555666665511 12256677765444 1123
Q ss_pred HHHHHHHHHHhhHcCCCccceEeecCCCCCCCH--HHHHHHHHHHHHcCCccEEeccc-ccHHHHHHHhccCCeeEEcc
Q 028264 103 AYVRACCEASLKRLDIDCIDLYYQHRVDTKIPI--EVTIGELKKLVEEGKIKYIGLSE-ACAATIRRAHAVHPITAVQL 178 (211)
Q Consensus 103 ~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~--~~~~~~l~~l~~~G~i~~iGvs~-~~~~~l~~~~~~~~~~~~q~ 178 (211)
+...+ +-+.|+..| +|.+.+|........ ..-|+.+.++++.=.|--||=.+ ++.+...+.++....+-+++
T Consensus 138 ~~~~~-~~~~l~~~G---~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMi 212 (309)
T PF01207_consen 138 EETIE-FARILEDAG---VSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVMI 212 (309)
T ss_dssp HHHHH-HHHHHHHTT-----EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEEE
T ss_pred hHHHH-HHHHhhhcc---cceEEEecCchhhcCCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEEE
Confidence 43443 555677777 688999986444332 45688888888876665555444 67888888888755556655
No 70
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=62.99 E-value=21 Score=31.86 Aligned_cols=107 Identities=14% Similarity=0.035 Sum_probs=69.2
Q ss_pred CchHHHHHHHHhC---CCCCCeEEEeccCCcCCCCCCCCCCHHHHHH--------HHHHHhhHcCCCccceEeecCCCCC
Q 028264 64 YTNEILVGKALKG---GMRERVELATKFGISFADGGKIRGDPAYVRA--------CCEASLKRLDIDCIDLYYQHRVDTK 132 (211)
Q Consensus 64 g~~e~~lg~~l~~---~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~--------~~~~sL~~Lg~~~lDl~~lh~~~~~ 132 (211)
|.-|.+..-+-+. .-+.++++++-++-..... .-...+.. .-.+.-+||.+.|+|.. .
T Consensus 148 GTyeT~~~~~r~h~~gdL~Gk~~lTaGLGGMgGAQ----plA~~ma~~v~i~vevd~srI~~Rl~t~y~d~~-------a 216 (561)
T COG2987 148 GTYETFAEAGRQHFGGDLKGKWVLTAGLGGMGGAQ----PLAATMAGAVCIAVEVDESRIDKRLRTGYLDEI-------A 216 (561)
T ss_pred chHHHHHHHHHHhcCCCccceEEEecCCCcccccc----hHHHHhcCceEEEEEeCHHHHHHHHhcchhhhh-------c
Confidence 4555554433322 3477888888877433110 00000100 01223367788888863 4
Q ss_pred CCHHHHHHHHHHHHHcCCccEEecccccHHHHHHHhcc-CC--eeEEccccC
Q 028264 133 IPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV-HP--ITAVQLEWS 181 (211)
Q Consensus 133 ~~~~~~~~~l~~l~~~G~i~~iGvs~~~~~~l~~~~~~-~~--~~~~q~~~~ 181 (211)
.+++|.++..++..+.|+-.+||+...-++.+.++++. +. +.+-|.++|
T Consensus 217 ~~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~~~pD~vtDQTsaH 268 (561)
T COG2987 217 ETLDEALALAEEATAAGEPISIGLLGNAAEILPELLRRGIRPDLVTDQTSAH 268 (561)
T ss_pred CCHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcCCCCceeccccccc
Confidence 56899999999999999999999999889999999887 44 445566655
No 71
>COG3215 PilZ Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=62.65 E-value=39 Score=23.75 Aligned_cols=82 Identities=16% Similarity=0.100 Sum_probs=50.9
Q ss_pred ChHHHHHHHHHHHHcCCCeeeCcCCcCCCchHHHHHHHHhCCCCCCeEEEeccCCcCCCC-----------CCCCCCHHH
Q 028264 36 PEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADG-----------GKIRGDPAY 104 (211)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~~e~~lg~~l~~~~R~~~~i~tK~~~~~~~~-----------~~~~~~~~~ 104 (211)
|.......---.++.|--|+-|-..|.-| .|.++---|-+ ..+++.+++|+.|..+.+ ....-....
T Consensus 18 D~a~LYsaYMpfl~nGglFVpTnk~y~iG-~evfl~l~lld-~pekl~vagkVaWitP~gt~sr~~GiGv~f~d~e~g~~ 95 (117)
T COG3215 18 DMALLYSAYMPFLENGGLFVPTNKVYSIG-EEVFLLLELLD-FPEKLPVAGKVAWITPVGTQSRPAGIGVQFTDGENGLK 95 (117)
T ss_pred hHHHHHHHHhHHHhcCcEEcccCCccccc-hhhhhhhhhcC-chhhccccceEEEEccCCCCCCCCceeeeccCCCchhh
Confidence 33444555556678999999999999865 55555444433 456899999976544332 111223346
Q ss_pred HHHHHHHHhhH-cCCC
Q 028264 105 VRACCEASLKR-LDID 119 (211)
Q Consensus 105 i~~~~~~sL~~-Lg~~ 119 (211)
++.+++..|.. +|-+
T Consensus 96 vr~~IE~~Lg~~igss 111 (117)
T COG3215 96 VRNQIETLLGGTIGSS 111 (117)
T ss_pred HHHHHHHHHHhhccCC
Confidence 77778777743 3544
No 72
>PRK07945 hypothetical protein; Provisional
Probab=62.16 E-value=1e+02 Score=26.39 Aligned_cols=146 Identities=13% Similarity=0.056 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHHHcCCCeeeCcCCcCC-----CchHHHHHHHHhC------CCCCCeEEEeccCCcCCCCCCCCCCHHHH
Q 028264 37 EPDMIALIHHAINSGITLLDTSDIYGP-----YTNEILVGKALKG------GMRERVELATKFGISFADGGKIRGDPAYV 105 (211)
Q Consensus 37 ~~~~~~~l~~A~~~Gin~~DtA~~Yg~-----g~~e~~lg~~l~~------~~R~~~~i~tK~~~~~~~~~~~~~~~~~i 105 (211)
.....++++.|++.|+..+=.+++... +-+...+-+.++. ..++ +-| +.|.... ..++.+.+..
T Consensus 110 ~~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l~~ky~~-I~I--l~GiE~d--~~~~g~~~~~ 184 (335)
T PRK07945 110 GSPIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAELNEELAP-FRI--LTGIEVD--ILDDGSLDQE 184 (335)
T ss_pred CCCHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHHHHhcCC-ceE--EEEeEec--ccCCCCcchh
Confidence 344779999999999998877777431 1122222222222 1122 222 3332220 0011222222
Q ss_pred HHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCccEEeccc---------------ccHHHHHHH-hc
Q 028264 106 RACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSE---------------ACAATIRRA-HA 169 (211)
Q Consensus 106 ~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~iGvs~---------------~~~~~l~~~-~~ 169 (211)
.+ .|+. .||+ +.-+|+... .+.++..+.|.++.+.+.+..+|=.. +..+.+.++ .+
T Consensus 185 ~~----~l~~--~D~v-IgSvH~~~~-~~~~~~~~~l~~ai~~~~~dvlgH~D~~~~~~~~~~~~~~~~~~~~i~~a~~e 256 (335)
T PRK07945 185 PE----LLDR--LDVV-VASVHSKLR-MDAAAMTRRMLAAVANPHTDVLGHCTGRLVTGNRGTRPESKFDAEAVFAACRE 256 (335)
T ss_pred HH----HHHh--CCEE-EEEeecCCC-CCHHHHHHHHHHHhcCCCCeEEecCchhhhccccCCCChhhcCHHHHHHHHHH
Confidence 22 3333 4554 666787543 33456678888888888888887321 222333333 33
Q ss_pred c-CCeeEEccccCccccCchhhHHHHHHhh
Q 028264 170 V-HPITAVQLEWSLWSRDVEAEIVPTCSDC 198 (211)
Q Consensus 170 ~-~~~~~~q~~~~~~~~~~~~~l~~~~~~~ 198 (211)
. ..+.++- +.+...+...++..|++.
T Consensus 257 ~g~~lEINt---~~~r~~P~~~il~~a~e~ 283 (335)
T PRK07945 257 HGTAVEINS---RPERRDPPTRLLRLALDA 283 (335)
T ss_pred hCCEEEEeC---CCCCCCChHHHHHHHHHc
Confidence 3 3344443 333333445788999886
No 73
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=62.12 E-value=60 Score=26.75 Aligned_cols=67 Identities=16% Similarity=0.171 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHhhHcCCC--------------------------ccceEeecCCCCCCCH---HHHHHHHHHHHHcCCc
Q 028264 101 DPAYVRACCEASLKRLDID--------------------------CIDLYYQHRVDTKIPI---EVTIGELKKLVEEGKI 151 (211)
Q Consensus 101 ~~~~i~~~~~~sL~~Lg~~--------------------------~lDl~~lh~~~~~~~~---~~~~~~l~~l~~~G~i 151 (211)
++++ ++.++++|++.|.. ..|++++..|-...|. .++++.|.+|+++|+.
T Consensus 113 ~~~d-~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~t 191 (254)
T COG1121 113 NKKD-KEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKT 191 (254)
T ss_pred cHHH-HHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCE
Confidence 4444 67777777777653 6789999998776665 4789999999999875
Q ss_pred cEEecccccHHHHHHHhcc
Q 028264 152 KYIGLSEACAATIRRAHAV 170 (211)
Q Consensus 152 ~~iGvs~~~~~~l~~~~~~ 170 (211)
|=+.+|+...+.+..+.
T Consensus 192 --Il~vtHDL~~v~~~~D~ 208 (254)
T COG1121 192 --VLMVTHDLGLVMAYFDR 208 (254)
T ss_pred --EEEEeCCcHHhHhhCCE
Confidence 77888888777766443
No 74
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=61.25 E-value=90 Score=25.54 Aligned_cols=98 Identities=8% Similarity=-0.056 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHHhhHcCCCccceEeecCCCCCCCH-HHHHHHHHHHHHcCCccEEecccccHHHHHHHhcc--CCeeEE
Q 028264 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPI-EVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV--HPITAV 176 (211)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~-~~~~~~l~~l~~~G~i~~iGvs~~~~~~l~~~~~~--~~~~~~ 176 (211)
.+.+.+.+..++.++ -|.+++|+-. .|. ..+. ++.-+.+..+++.-. .-|.+-+++++.++++++. ...-++
T Consensus 23 ~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~-~~~~~ee~~r~v~~i~~~~~-~piSIDT~~~~v~e~aL~~~~G~~iIN 97 (252)
T cd00740 23 EDYDEALDVARQQVE-GGAQILDLNV--DYG-GLDGVSAMKWLLNLLATEPT-VPLMLDSTNWEVIEAGLKCCQGKCVVN 97 (252)
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEECC--CCC-CCCHHHHHHHHHHHHHHhcC-CcEEeeCCcHHHHHHHHhhCCCCcEEE
Confidence 456777777777765 4999999865 243 2333 333333333332212 2378888999999999986 544444
Q ss_pred ccccCccccCchhhHHHHHHhh-cCchh
Q 028264 177 QLEWSLWSRDVEAEIVPTCSDC-LGNLA 203 (211)
Q Consensus 177 q~~~~~~~~~~~~~l~~~~~~~-~~~i~ 203 (211)
-+...-.+.. .+.+++.++++ ..++.
T Consensus 98 sIs~~~~~e~-~~~~~~~~~~~~~~vV~ 124 (252)
T cd00740 98 SINLEDGEER-FLKVARLAKEHGAAVVV 124 (252)
T ss_pred eCCCCCCccc-cHHHHHHHHHhCCCEEE
Confidence 3332211111 25788888887 44443
No 75
>PRK15108 biotin synthase; Provisional
Probab=61.06 E-value=1.1e+02 Score=26.33 Aligned_cols=105 Identities=12% Similarity=0.109 Sum_probs=56.6
Q ss_pred CChHHHHHHHHHHHHcCCCeeeCcCCc-CC-CchHHHHHHHHhCCCCCCeEEEeccCCcCCCCCCCCCCHHHHHHHHHHH
Q 028264 35 EPEPDMIALIHHAINSGITLLDTSDIY-GP-YTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEAS 112 (211)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gin~~DtA~~Y-g~-g~~e~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~s 112 (211)
.+.+++.+..+.+.+.|++.|-..... +. ...-+.+.+.++.++...+.++.-.+ . .+.+.+ +-
T Consensus 76 ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~~~i~v~~s~G--~-------ls~e~l-----~~ 141 (345)
T PRK15108 76 MEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLETCMTLG--T-------LSESQA-----QR 141 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecCCCCCcchHHHHHHHHHHHHhCCCEEEEeCC--c-------CCHHHH-----HH
Confidence 467888888888889999988543221 11 11224455565553222233322222 1 333332 23
Q ss_pred hhHcCCCccceEeecCC------CCCCCHHHHHHHHHHHHHcCCccE
Q 028264 113 LKRLDIDCIDLYYQHRV------DTKIPIEVTIGELKKLVEEGKIKY 153 (211)
Q Consensus 113 L~~Lg~~~lDl~~lh~~------~~~~~~~~~~~~l~~l~~~G~i~~ 153 (211)
|+..|++++.+-+=-.| -...++++.++.++.+++.|.--.
T Consensus 142 LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~ 188 (345)
T PRK15108 142 LANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVC 188 (345)
T ss_pred HHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCcee
Confidence 55566664332211111 112357899999999999997444
No 76
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=60.73 E-value=44 Score=26.05 Aligned_cols=40 Identities=15% Similarity=0.092 Sum_probs=25.1
Q ss_pred cceEeecCCCCCCCHHHHHHHHHHHHHcCCccEEecccccHHHH
Q 028264 121 IDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATI 164 (211)
Q Consensus 121 lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~iGvs~~~~~~l 164 (211)
+|.+++|..++ . +..+.+.+......++.+|++.....++
T Consensus 74 ~d~Vqlhg~e~---~-~~~~~l~~~~~~~~i~~i~~~~~~~~~~ 113 (203)
T cd00405 74 LDVVQLHGDES---P-EYCAQLRARLGLPVIKAIRVKDEEDLEK 113 (203)
T ss_pred CCEEEECCCCC---H-HHHHHHHhhcCCcEEEEEecCChhhHHH
Confidence 68899997542 2 2333333333346788899998766544
No 77
>PRK09061 D-glutamate deacylase; Validated
Probab=59.99 E-value=1.1e+02 Score=27.90 Aligned_cols=109 Identities=13% Similarity=0.069 Sum_probs=64.0
Q ss_pred HHHHHHHHHHcCCCeeeCcCCcCCCchHHHHHHHHhCCCCCCeEEEeccCCcCCCCCCCCCCHHHHHHHHHHHh---hHc
Q 028264 40 MIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASL---KRL 116 (211)
Q Consensus 40 ~~~~l~~A~~~Gin~~DtA~~Yg~g~~e~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL---~~L 116 (211)
..++++.|++.|...|=+...|-.+.+...+-+.++...+-+..|........ ..+.....+++++.+ +..
T Consensus 171 m~~ll~~al~~Ga~gis~~~~y~p~~~~~eL~~l~~~A~~~g~~v~~H~e~~~------~~~~~~e~~av~~~i~lA~~~ 244 (509)
T PRK09061 171 ILELLEQGLDEGALGIGIGAGYAPGTGHKEYLELARLAARAGVPTYTHVRYLS------NVDPRSSVDAYQELIAAAAET 244 (509)
T ss_pred HHHHHHHHHHCCCCEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEEEecCcc------cCCchhHHHHHHHHHHHHHHh
Confidence 56778888999999997765664445555566666554455667777664221 011222233344443 344
Q ss_pred CCCccceEeecCCC-CCCCHHHHHHHHHHHHHcCCccEEecc
Q 028264 117 DIDCIDLYYQHRVD-TKIPIEVTIGELKKLVEEGKIKYIGLS 157 (211)
Q Consensus 117 g~~~lDl~~lh~~~-~~~~~~~~~~~l~~l~~~G~i~~iGvs 157 (211)
|. -+.+.|... ...+..+.++.+++++++|.--..-++
T Consensus 245 G~---rv~IsHlss~g~~~~~~~le~I~~Ar~~Gi~Vt~e~~ 283 (509)
T PRK09061 245 GA---HMHICHVNSTSLRDIDRCLALVEKAQAQGLDVTTEAY 283 (509)
T ss_pred CC---CEEEEeeccCCcccHHHHHHHHHHHHHcCCcEEEEec
Confidence 53 355556542 123567888999999999854433343
No 78
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=59.32 E-value=68 Score=28.39 Aligned_cols=61 Identities=11% Similarity=-0.114 Sum_probs=37.9
Q ss_pred CCCHHHHHHHHHHHhhHcCCCccceEeecCCCCC------C-CHH---HHH-HHHHHHHHcCCccEEecccccH
Q 028264 99 RGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK------I-PIE---VTI-GELKKLVEEGKIKYIGLSEACA 161 (211)
Q Consensus 99 ~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~------~-~~~---~~~-~~l~~l~~~G~i~~iGvs~~~~ 161 (211)
..+.+.+.+.++..+ .|+.+++.++.+.-.... . +.+ +.+ .+.+.|.+.|.. .+++++|.-
T Consensus 204 ~qt~e~~~~~l~~~~-~l~~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy~-~yei~~far 275 (430)
T PRK08208 204 GQTHASWMESLDQAL-VYRPEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARDLLLEAGYT-QTSMRMFRR 275 (430)
T ss_pred CCCHHHHHHHHHHHH-hCCCCEEEEccccccCCCccchhcCCCHHHHHHHHHHHHHHHHHcCCe-EEeecceec
Confidence 367888888888776 478888888876532111 0 111 222 445566677764 488888764
No 79
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=58.87 E-value=1.2e+02 Score=26.06 Aligned_cols=24 Identities=8% Similarity=0.180 Sum_probs=21.3
Q ss_pred CChHHHHHHHHHHHHcCCCeeeCc
Q 028264 35 EPEPDMIALIHHAINSGITLLDTS 58 (211)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gin~~DtA 58 (211)
.+.++..++++...++|+..++.+
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg 45 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVT 45 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEee
Confidence 467889999999999999999995
No 80
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=58.27 E-value=1.2e+02 Score=25.99 Aligned_cols=74 Identities=12% Similarity=-0.044 Sum_probs=56.4
Q ss_pred CCCCHHHHHHHHHHHhhHcCCCccceEeecCCCCC-CCHHHHHHHHHHHHHcCCccEEecccccHHHHHHHhccCC
Q 028264 98 IRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK-IPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHP 172 (211)
Q Consensus 98 ~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~-~~~~~~~~~l~~l~~~G~i~~iGvs~~~~~~l~~~~~~~~ 172 (211)
..++.++..+-.+-+.+..+++++-|=.+...... .++.+++++.++|+++|..- +=+|+-++..-+++.+..+
T Consensus 145 g~~ta~eAv~~a~lare~~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v-~~yc~~d~~~a~~l~~~g~ 219 (326)
T PRK11840 145 GCYTAEEAVRTLRLAREAGGWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQV-MVYCSDDPIAAKRLEDAGA 219 (326)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHhcCC
Confidence 34678888888888888889998888776655443 45789999999999999974 3667777777777766644
No 81
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=57.48 E-value=93 Score=24.48 Aligned_cols=137 Identities=9% Similarity=0.038 Sum_probs=78.2
Q ss_pred ChHHHHHHHHHHHHcCCCeeeCc----------CCcCCC--chHHHHHHHHhCCC-CCCeEEEeccCCcCCCCCCCCCCH
Q 028264 36 PEPDMIALIHHAINSGITLLDTS----------DIYGPY--TNEILVGKALKGGM-RERVELATKFGISFADGGKIRGDP 102 (211)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~DtA----------~~Yg~g--~~e~~lg~~l~~~~-R~~~~i~tK~~~~~~~~~~~~~~~ 102 (211)
+.++..+..+.+.++|+..+|-- ..||.. ...+.+-+.++.+. .-.+-++.|+...+. . .
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~------~-~ 137 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWD------D-E 137 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccC------C-c
Confidence 55778888888889999988853 234421 23344444444411 111456667643331 1 1
Q ss_pred HHHHHHHHHHhhHcCCCccceEeecCCCCCC--CHHHHHHHHHHHHHcCCccEEeccc-ccHHHHHHHhccCCeeEEccc
Q 028264 103 AYVRACCEASLKRLDIDCIDLYYQHRVDTKI--PIEVTIGELKKLVEEGKIKYIGLSE-ACAATIRRAHAVHPITAVQLE 179 (211)
Q Consensus 103 ~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~--~~~~~~~~l~~l~~~G~i~~iGvs~-~~~~~l~~~~~~~~~~~~q~~ 179 (211)
+...+ +-+.|+..|+ |.+.+|...... .....|+.+.++++.-.+--++... .+.+.+.++++....+.+++-
T Consensus 138 ~~~~~-~~~~l~~~Gv---d~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~ig 213 (231)
T cd02801 138 EETLE-LAKALEDAGA---SALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMIG 213 (231)
T ss_pred hHHHH-HHHHHHHhCC---CEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEc
Confidence 22222 3334555675 566677653211 1122467777787776666666665 468888888887667777776
Q ss_pred cCcc
Q 028264 180 WSLW 183 (211)
Q Consensus 180 ~~~~ 183 (211)
-.++
T Consensus 214 r~~l 217 (231)
T cd02801 214 RGAL 217 (231)
T ss_pred HHhH
Confidence 5443
No 82
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=57.24 E-value=10 Score=29.68 Aligned_cols=67 Identities=15% Similarity=0.133 Sum_probs=40.1
Q ss_pred HhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCccEEeccc-ccHHHHHHHhccCCeeEEccccCc
Q 028264 112 SLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSE-ACAATIRRAHAVHPITAVQLEWSL 182 (211)
Q Consensus 112 sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~iGvs~-~~~~~l~~~~~~~~~~~~q~~~~~ 182 (211)
.+..+|+||+-+.+.....+..+ .+.+.++.+.-.-+.+||.. .+.+.+.++++..+++++|+.-+-
T Consensus 14 ~~~~~g~d~~Gfi~~~~S~R~v~----~~~a~~l~~~~~~~~VgVf~~~~~~~I~~~~~~~~ld~vQLHG~e 81 (197)
T PF00697_consen 14 LAAELGADYLGFIFYPKSPRYVS----PDQARELVSAVPPKIVGVFVNQSPEEILEIVEELGLDVVQLHGDE 81 (197)
T ss_dssp HHHHHTSSEEEEE--TTCTTB------HHHHHHHHCCSSSSEEEEESSS-HHHHHHHHHHCTESEEEE-SGG
T ss_pred HHHHcCCCEEeeecCCCCCCccC----HHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHHcCCCEEEECCCC
Confidence 34678888887764332222232 33344444443344788764 677889999999999999976555
No 83
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=56.87 E-value=1.2e+02 Score=25.66 Aligned_cols=122 Identities=14% Similarity=0.025 Sum_probs=67.2
Q ss_pred ChHHHHHHHHHHHHc-CCCeeeCcCCcCCCchHHHHH---HHHhCCC-CCCeEEEeccCCcCCCCCCCCCCHHHHHHHHH
Q 028264 36 PEPDMIALIHHAINS-GITLLDTSDIYGPYTNEILVG---KALKGGM-RERVELATKFGISFADGGKIRGDPAYVRACCE 110 (211)
Q Consensus 36 ~~~~~~~~l~~A~~~-Gin~~DtA~~Yg~g~~e~~lg---~~l~~~~-R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~ 110 (211)
+.++..++++...+. ||+.+--+..-.-=.+...+. +.+++.+ .+.+-|.|+..... +..+.+.+-
T Consensus 120 ~~~e~~~~i~~i~~~~~I~~VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~---------p~rit~ell 190 (321)
T TIGR03822 120 SPAELDAAFAYIADHPEIWEVILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVAD---------PARVTPALI 190 (321)
T ss_pred CHHHHHHHHHHHHhCCCccEEEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccC---------hhhcCHHHH
Confidence 556777888877654 887653221110001122233 3333322 33456777754322 333444455
Q ss_pred HHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCccEE------ecccccHHHHHHHhc
Q 028264 111 ASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYI------GLSEACAATIRRAHA 169 (211)
Q Consensus 111 ~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~i------Gvs~~~~~~l~~~~~ 169 (211)
+.|++.|.. ..+.+|...+..-.+++.++++.|++.|..-.. |+ |.+.+.+.++.+
T Consensus 191 ~~L~~~g~~--v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~gv-Nd~~~~l~~l~~ 252 (321)
T TIGR03822 191 AALKTSGKT--VYVALHANHARELTAEARAACARLIDAGIPMVSQSVLLRGV-NDDPETLAALMR 252 (321)
T ss_pred HHHHHcCCc--EEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCCC-CCCHHHHHHHHH
Confidence 566666732 357788765544458899999999999963211 33 566666666554
No 84
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=56.50 E-value=1.2e+02 Score=26.22 Aligned_cols=124 Identities=12% Similarity=0.153 Sum_probs=76.2
Q ss_pred CChHHHHHHHHHHHHcC---CCeeeCcCCcCCCchHHHHHHHHhCCCCCCeEEEeccCCcCCCCCCCCCCHHHHHHHHHH
Q 028264 35 EPEPDMIALIHHAINSG---ITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEA 111 (211)
Q Consensus 35 ~~~~~~~~~l~~A~~~G---in~~DtA~~Yg~g~~e~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~ 111 (211)
.+.++..+++....+.- +-.+|..+..+. --..+-+.+. ...-++|.+|..... ...+.+.+.+-+++
T Consensus 48 ~~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s--~~~~l~~~~~--~~piilV~NK~DLl~-----k~~~~~~~~~~l~~ 118 (360)
T TIGR03597 48 LNDDDFLNLLNSLGDSNALIVYVVDIFDFEGS--LIPELKRFVG--GNPVLLVGNKIDLLP-----KSVNLSKIKEWMKK 118 (360)
T ss_pred CCHHHHHHHHhhcccCCcEEEEEEECcCCCCC--ccHHHHHHhC--CCCEEEEEEchhhCC-----CCCCHHHHHHHHHH
Confidence 35566666666655321 346676554431 1122323332 455688999987543 12345667766777
Q ss_pred HhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCccEEecccccHHH-HHHHh
Q 028264 112 SLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAAT-IRRAH 168 (211)
Q Consensus 112 sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~iGvs~~~~~~-l~~~~ 168 (211)
.++..|....+++.+..- ....++++++.+.++.+.+.+--+|.+|..-.. +-.++
T Consensus 119 ~~k~~g~~~~~i~~vSAk-~g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStliN~l~ 175 (360)
T TIGR03597 119 RAKELGLKPVDIILVSAK-KGNGIDELLDKIKKARNKKDVYVVGVTNVGKSSLINKLL 175 (360)
T ss_pred HHHHcCCCcCcEEEecCC-CCCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHH
Confidence 777787654466666543 345688999999888766788889999977543 33433
No 85
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=56.39 E-value=1.2e+02 Score=25.30 Aligned_cols=135 Identities=13% Similarity=0.101 Sum_probs=79.4
Q ss_pred ChHHHHHHHHHHHHcC-CCeeeC-------cC-CcCCCchHHHHHHHHhCCC-CCCeEEEeccCCcCCCCCCCCCCHHHH
Q 028264 36 PEPDMIALIHHAINSG-ITLLDT-------SD-IYGPYTNEILVGKALKGGM-RERVELATKFGISFADGGKIRGDPAYV 105 (211)
Q Consensus 36 ~~~~~~~~l~~A~~~G-in~~Dt-------A~-~Yg~g~~e~~lg~~l~~~~-R~~~~i~tK~~~~~~~~~~~~~~~~~i 105 (211)
+.++..++.+.+.+.| +..||- +. .+.-+...+.+-+.++.+. .-++-|..|+.+.. +.+
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~----------~~~ 171 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPNV----------TDI 171 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCCc----------hhH
Confidence 4577778888888888 888875 21 1222345666666665522 12577888986322 222
Q ss_pred HHHHHHHhhHcCCCccceEe-ecCC--CCCC--------------C--HHHHHHHHHHHHHcCCccEEeccc-ccHHHHH
Q 028264 106 RACCEASLKRLDIDCIDLYY-QHRV--DTKI--------------P--IEVTIGELKKLVEEGKIKYIGLSE-ACAATIR 165 (211)
Q Consensus 106 ~~~~~~sL~~Lg~~~lDl~~-lh~~--~~~~--------------~--~~~~~~~l~~l~~~G~i~~iGvs~-~~~~~l~ 165 (211)
. .+-+.++..|++.+++.- .+.. +... + ..-.++.+.++++.=.+--||+.. .+++...
T Consensus 172 ~-~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~da~ 250 (301)
T PRK07259 172 V-EIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAEDAI 250 (301)
T ss_pred H-HHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHHHHH
Confidence 2 344457778877766531 1111 1000 0 012456666776654577788887 4788888
Q ss_pred HHhccCCeeEEccccCc
Q 028264 166 RAHAVHPITAVQLEWSL 182 (211)
Q Consensus 166 ~~~~~~~~~~~q~~~~~ 182 (211)
+++... .+.+|+-=-+
T Consensus 251 ~~l~aG-Ad~V~igr~l 266 (301)
T PRK07259 251 EFIMAG-ASAVQVGTAN 266 (301)
T ss_pred HHHHcC-CCceeEcHHH
Confidence 888765 5888874433
No 86
>COG0218 Predicted GTPase [General function prediction only]
Probab=56.07 E-value=1e+02 Score=24.47 Aligned_cols=100 Identities=12% Similarity=-0.067 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHH------cCCCeeeCcCCcCCCchHHHHHHHHhCCCCCCeEEEeccCCcCCCCCCCCCCHHHHHHHHHH
Q 028264 38 PDMIALIHHAIN------SGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEA 111 (211)
Q Consensus 38 ~~~~~~l~~A~~------~Gin~~DtA~~Yg~g~~e~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~ 111 (211)
+.-.+++...++ ..+-.+|.-..-- ..+..+=+++......-+++.||..- .......+.+..
T Consensus 91 e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~--~~D~em~~~l~~~~i~~~vv~tK~DK---------i~~~~~~k~l~~ 159 (200)
T COG0218 91 EKWKKLIEEYLEKRANLKGVVLLIDARHPPK--DLDREMIEFLLELGIPVIVVLTKADK---------LKKSERNKQLNK 159 (200)
T ss_pred HHHHHHHHHHHhhchhheEEEEEEECCCCCc--HHHHHHHHHHHHcCCCeEEEEEcccc---------CChhHHHHHHHH
Confidence 334455555543 2455778665444 45677888888877888999999852 446777788888
Q ss_pred HhhHcCCCccce--EeecCCCCCCCHHHHHHHHHHHHHc
Q 028264 112 SLKRLDIDCIDL--YYQHRVDTKIPIEVTIGELKKLVEE 148 (211)
Q Consensus 112 sL~~Lg~~~lDl--~~lh~~~~~~~~~~~~~~l~~l~~~ 148 (211)
..+.|+.+..|- +++........++++++++.++...
T Consensus 160 v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 160 VAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred HHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 888888776665 4444444556689999998887654
No 87
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=55.95 E-value=1e+02 Score=26.62 Aligned_cols=59 Identities=14% Similarity=0.005 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHHhhHcCCCccceEeecC-CCC---------C---CCHH----HHHHHHHHHHHcCCccEEeccccc
Q 028264 100 GDPAYVRACCEASLKRLDIDCIDLYYQHR-VDT---------K---IPIE----VTIGELKKLVEEGKIKYIGLSEAC 160 (211)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~-~~~---------~---~~~~----~~~~~l~~l~~~G~i~~iGvs~~~ 160 (211)
.+.+.+++.++.. .+++++++.++.+.- |.. . .+.+ ..-.+.+.|.+.|.. .+++++|.
T Consensus 164 qt~~~~~~~l~~~-~~l~~~~i~~y~l~~~pgT~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~-~~~~~~fa 239 (377)
T PRK08599 164 QTIEDFKESLAKA-LALDIPHYSAYSLILEPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEMEAHGFH-QYEISNFA 239 (377)
T ss_pred CCHHHHHHHHHHH-HccCCCEEeeeceeecCCChhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCCc-Eeeeeeee
Confidence 5677777777764 457777777765431 110 0 0111 123455666777764 57888875
No 88
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=55.79 E-value=73 Score=28.36 Aligned_cols=60 Identities=15% Similarity=0.190 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHhhHcCCCccceEeec-CCC----------CCC-CHHH---HH-HHHHHHHHcCCccEEecccccH
Q 028264 100 GDPAYVRACCEASLKRLDIDCIDLYYQH-RVD----------TKI-PIEV---TI-GELKKLVEEGKIKYIGLSEACA 161 (211)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh-~~~----------~~~-~~~~---~~-~~l~~l~~~G~i~~iGvs~~~~ 161 (211)
.+.+.+.+.++..++ ++.+++.+|.+- .|. ... +.++ .+ .+.+.|.+.|. ..+++++|.-
T Consensus 215 qt~e~~~~tl~~~~~-l~~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~Gy-~~~~~~~fa~ 290 (455)
T TIGR00538 215 QTKESFAKTLEKVAE-LNPDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLTEAGY-QFIGMDHFAK 290 (455)
T ss_pred CCHHHHHHHHHHHHh-cCCCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHHHCCC-EEEeccceeC
Confidence 678889888887665 899999988762 111 001 1222 22 34455666776 5699999874
No 89
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=55.48 E-value=94 Score=27.15 Aligned_cols=61 Identities=10% Similarity=-0.046 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHHHHhhHcCCCccceEeecCCCC-----------C--CCHH---HH-HHHHHHHHHcCCccEEecccccH
Q 028264 99 RGDPAYVRACCEASLKRLDIDCIDLYYQHRVDT-----------K--IPIE---VT-IGELKKLVEEGKIKYIGLSEACA 161 (211)
Q Consensus 99 ~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~-----------~--~~~~---~~-~~~l~~l~~~G~i~~iGvs~~~~ 161 (211)
..+.+.+++.++..++ |+.+++.+|.+.--.. . .+.+ +. ..+.+.|.+.|..+ +++|||.-
T Consensus 173 gqt~e~~~~~l~~~~~-l~p~his~y~L~i~~gT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~-yeis~fa~ 250 (390)
T PRK06582 173 GQTLKDWQEELKQAMQ-LATSHISLYQLTIEKGTPFYKLFKEGNLILPHSDAAAEMYEWTNHYLESKKYFR-YEISNYAK 250 (390)
T ss_pred CCCHHHHHHHHHHHHh-cCCCEEEEecCEEccCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCce-eeceeeeC
Confidence 4788999999999886 7899999987764211 0 1112 22 23445566778755 79999874
No 90
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=55.46 E-value=1.3e+02 Score=25.40 Aligned_cols=133 Identities=12% Similarity=0.070 Sum_probs=70.6
Q ss_pred CChHHHHHHHHHHHHcCCCeeeCcCCcC--CCchHHHHHHHHhCC-CCCCeEEEeccCCcCCCCCCCCCCHHHHHHHHHH
Q 028264 35 EPEPDMIALIHHAINSGITLLDTSDIYG--PYTNEILVGKALKGG-MRERVELATKFGISFADGGKIRGDPAYVRACCEA 111 (211)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg--~g~~e~~lg~~l~~~-~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~ 111 (211)
.+.++..++++.+.+.|++.+.-...-. .-+-.+++ +.+++. ...++.|+|-... +.+. -.
T Consensus 49 ls~eei~~~i~~~~~~gi~~I~~tGGEPll~~~l~~li-~~i~~~~~~~~i~itTNG~l--------------l~~~-~~ 112 (331)
T PRK00164 49 LSLEEIERLVRAFVALGVRKVRLTGGEPLLRKDLEDII-AALAALPGIRDLALTTNGYL--------------LARR-AA 112 (331)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCcCccCHHHHH-HHHHhcCCCceEEEEcCchh--------------HHHH-HH
Confidence 4678899999999999998776432100 00122222 223332 1235556655310 1111 23
Q ss_pred HhhHcCCCccceEeecCCCC--------CCCHHHHHHHHHHHHHcCC----ccEEecccccHHHHHHHhcc---CCeeEE
Q 028264 112 SLKRLDIDCIDLYYQHRVDT--------KIPIEVTIGELKKLVEEGK----IKYIGLSEACAATIRRAHAV---HPITAV 176 (211)
Q Consensus 112 sL~~Lg~~~lDl~~lh~~~~--------~~~~~~~~~~l~~l~~~G~----i~~iGvs~~~~~~l~~~~~~---~~~~~~ 176 (211)
.|...|++.+- +-+|..++ ...+++++++++.+++.|. +..+.+...+.+++.++++. .++.+.
T Consensus 113 ~L~~agl~~i~-ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~gv~v~ 191 (331)
T PRK00164 113 ALKDAGLDRVN-VSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRGIQLR 191 (331)
T ss_pred HHHHcCCCEEE-EEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCCCeEE
Confidence 34445655442 33444332 2357899999999999986 22333334555566555543 445555
Q ss_pred ccccCccc
Q 028264 177 QLEWSLWS 184 (211)
Q Consensus 177 q~~~~~~~ 184 (211)
-++|.++.
T Consensus 192 ~ie~~p~~ 199 (331)
T PRK00164 192 FIELMPTG 199 (331)
T ss_pred EEEeeECC
Confidence 55555543
No 91
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=55.43 E-value=84 Score=30.73 Aligned_cols=70 Identities=11% Similarity=0.037 Sum_probs=55.0
Q ss_pred CCCHHHHHHHHHHHhhHcCCC--------------------------ccceEeecCCCCCCCH---HHHHHHHHHHHHcC
Q 028264 99 RGDPAYVRACCEASLKRLDID--------------------------CIDLYYQHRVDTKIPI---EVTIGELKKLVEEG 149 (211)
Q Consensus 99 ~~~~~~i~~~~~~sL~~Lg~~--------------------------~lDl~~lh~~~~~~~~---~~~~~~l~~l~~~G 149 (211)
+..+.++.+.++..|+.++.. ...++++..|....|+ ..+|+.+.++++.|
T Consensus 669 G~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g 748 (885)
T KOG0059|consen 669 GLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNG 748 (885)
T ss_pred CCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 355667777777777766532 4688888888766554 47899999999999
Q ss_pred CccEEecccccHHHHHHHhcc
Q 028264 150 KIKYIGLSEACAATIRRAHAV 170 (211)
Q Consensus 150 ~i~~iGvs~~~~~~l~~~~~~ 170 (211)
+ +|=+.+|+.++.+.+...
T Consensus 749 ~--aiiLTSHsMeE~EaLCtR 767 (885)
T KOG0059|consen 749 K--AIILTSHSMEEAEALCTR 767 (885)
T ss_pred C--EEEEEcCCHHHHHHHhhh
Confidence 8 899999999999888765
No 92
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=55.33 E-value=1.3e+02 Score=25.34 Aligned_cols=182 Identities=14% Similarity=0.073 Sum_probs=87.0
Q ss_pred CCcccCcceecccccCCcCC-CCCChHHHHHHHHHHHH-cCCCeeeCcCCcCCCc---hHHHHHHHHhCC--CCCCeEEE
Q 028264 13 QGLEVSAQGLGCMAMSCLYG-PPEPEPDMIALIHHAIN-SGITLLDTSDIYGPYT---NEILVGKALKGG--MRERVELA 85 (211)
Q Consensus 13 ~g~~vs~lglG~~~~~~~~~-~~~~~~~~~~~l~~A~~-~Gin~~DtA~~Yg~g~---~e~~lg~~l~~~--~R~~~~i~ 85 (211)
.|.+| .|.||.|.-.. +. ...++++..+.+...++ .|.+.+|---.|+.-. +-..+-++|+.. .+..+.|+
T Consensus 66 ~G~kV-iiS~GG~~g~~-~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq~~~p~l~vs 143 (294)
T cd06543 66 AGGDV-IVSFGGASGTP-LATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALALLQKEYPDLKIS 143 (294)
T ss_pred cCCeE-EEEecCCCCCc-cccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHHHHHHCCCcEEE
Confidence 34455 56778776322 22 22356666666666664 5999999766665211 123344555551 23456666
Q ss_pred eccCCcCCCCCCCCCCHHHHHHHHHHHhhHcCC--CccceEeecCCCC--CCCH-HHHHHHHHHHHHcCCccEEeccccc
Q 028264 86 TKFGISFADGGKIRGDPAYVRACCEASLKRLDI--DCIDLYYQHRVDT--KIPI-EVTIGELKKLVEEGKIKYIGLSEAC 160 (211)
Q Consensus 86 tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~--~~lDl~~lh~~~~--~~~~-~~~~~~l~~l~~~G~i~~iGvs~~~ 160 (211)
.-+...+ ...+.+.+ .+-+..+.-|+ +++.++-...-+. ..++ +....+.+.++.+=+--+=+ ++
T Consensus 144 ~Tlp~~p-----~gl~~~g~--~~l~~a~~~Gv~~d~VNiMtmDyg~~~~~~~mg~~a~~aa~~~~~ql~~~~~~---~s 213 (294)
T cd06543 144 FTLPVLP-----TGLTPDGL--NVLEAAAANGVDLDTVNIMTMDYGSSAGSQDMGAAAISAAESLHDQLKDLYPK---LS 213 (294)
T ss_pred EecCCCC-----CCCChhHH--HHHHHHHHcCCCcceeeeeeecCCCCCCcccHHHHHHHHHHHHHHHHHHHccC---CC
Confidence 5554333 12333322 24444455564 3444444433222 1232 34445555444431111111 33
Q ss_pred HHHHHHHhccCCeeEEccccC--ccccCchhhHHHHHHhh-cCchhhhhh
Q 028264 161 AATIRRAHAVHPITAVQLEWS--LWSRDVEAEIVPTCSDC-LGNLALELL 207 (211)
Q Consensus 161 ~~~l~~~~~~~~~~~~q~~~~--~~~~~~~~~l~~~~~~~-~~~i~~~~l 207 (211)
.+++-+.+.. .|.+-++... .+.......+.++++++ |+.+.|..+
T Consensus 214 ~~~~~~~ig~-TpMiG~nD~~~e~ft~~da~~~~~fA~~~~l~~~s~Ws~ 262 (294)
T cd06543 214 DAELWAMIGV-TPMIGVNDVGSEVFTLADAQTLVDFAKEKGLGRLSMWSL 262 (294)
T ss_pred HHHHHHHccc-cccccccCCCCceeeHHHHHHHHHHHHhCCCCeEeeeec
Confidence 3333333332 2333333322 23333335788888888 888877643
No 93
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=54.96 E-value=17 Score=29.64 Aligned_cols=47 Identities=13% Similarity=0.295 Sum_probs=31.4
Q ss_pred CCCcccCcceecccccCCcCCCCC--ChHHHHHHHH----HHHHcCCCeeeCcC
Q 028264 12 SQGLEVSAQGLGCMAMSCLYGPPE--PEPDMIALIH----HAINSGITLLDTSD 59 (211)
Q Consensus 12 ~~g~~vs~lglG~~~~~~~~~~~~--~~~~~~~~l~----~A~~~Gin~~DtA~ 59 (211)
.+|+.+|.+||.+-+-- ++|+.. .++++.++++ .|.+.|||.+--|.
T Consensus 65 etgv~ipSmClSaHRRf-PfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAG 117 (287)
T COG3623 65 ETGVRIPSMCLSAHRRF-PFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAG 117 (287)
T ss_pred HhCCCccchhhhhhccC-CCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeecc
Confidence 57999999999986642 245432 2344555554 55678999998774
No 94
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=54.41 E-value=1.2e+02 Score=26.14 Aligned_cols=26 Identities=15% Similarity=0.114 Sum_probs=13.2
Q ss_pred CCHHHHHHHHHHHhhHcCCCccceEee
Q 028264 100 GDPAYVRACCEASLKRLDIDCIDLYYQ 126 (211)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~l 126 (211)
.+.+.+.+.++... .++.+++.+|.+
T Consensus 163 qt~e~~~~~l~~~~-~l~~~~is~y~l 188 (374)
T PRK05799 163 QTLEDWKETLEKVV-ELNPEHISCYSL 188 (374)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEEecc
Confidence 34555555555543 245555555543
No 95
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=54.24 E-value=1.1e+02 Score=25.22 Aligned_cols=71 Identities=10% Similarity=-0.075 Sum_probs=44.4
Q ss_pred CCCHHHHHHHHHHHhhHc------CCCccceEeecCCCCC-CCHHHHHHHHHHHHHcCCccEEecccccHHHHHHHhcc
Q 028264 99 RGDPAYVRACCEASLKRL------DIDCIDLYYQHRVDTK-IPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV 170 (211)
Q Consensus 99 ~~~~~~i~~~~~~sL~~L------g~~~lDl~~lh~~~~~-~~~~~~~~~l~~l~~~G~i~~iGvs~~~~~~l~~~~~~ 170 (211)
..+.++..+-.+-..+.. +++++-|=.+..+.+. .+..|++++-+.|+++|-+- +--++-++-.-+++.+.
T Consensus 80 c~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~V-lPY~~~D~v~a~rLed~ 157 (267)
T CHL00162 80 CQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFTV-LPYINADPMLAKHLEDI 157 (267)
T ss_pred CCCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCCCcccCCChHHHHHHHHHHHHCCCEE-eecCCCCHHHHHHHHHc
Confidence 355666655555555555 5667666666555443 35689999999999999863 34445555544454443
No 96
>PRK06256 biotin synthase; Validated
Probab=53.60 E-value=1.4e+02 Score=25.27 Aligned_cols=119 Identities=18% Similarity=0.122 Sum_probs=60.7
Q ss_pred CChHHHHHHHHHHHHcCCCeee-CcCCcCCCch-HHHHHHHHhCCCC-CCeEEEeccCCcCCCCCCCCCCHHHHHHHHHH
Q 028264 35 EPEPDMIALIHHAINSGITLLD-TSDIYGPYTN-EILVGKALKGGMR-ERVELATKFGISFADGGKIRGDPAYVRACCEA 111 (211)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gin~~D-tA~~Yg~g~~-e~~lg~~l~~~~R-~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~ 111 (211)
.+.++..+.++.+.+.|++.|- .+..++.... -+.+-+.++.+.+ -.+-+.+-.+. .+++.+ +
T Consensus 91 ~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~~~i~~~~~~g~---------l~~e~l-----~ 156 (336)
T PRK06256 91 LDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEETDLEICACLGL---------LTEEQA-----E 156 (336)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhcCCCcEEecCCc---------CCHHHH-----H
Confidence 4778888899999999985332 2223321111 1234445544221 22323222221 233333 3
Q ss_pred HhhHcCCCccceEe------ecCCCCCCCHHHHHHHHHHHHHcCCccE----EecccccHHHHHHHh
Q 028264 112 SLKRLDIDCIDLYY------QHRVDTKIPIEVTIGELKKLVEEGKIKY----IGLSEACAATIRRAH 168 (211)
Q Consensus 112 sL~~Lg~~~lDl~~------lh~~~~~~~~~~~~~~l~~l~~~G~i~~----iGvs~~~~~~l~~~~ 168 (211)
.|+..|++.+.+-+ +........+++.+++++.+++.|.--. +|+ +.+.+++.+.+
T Consensus 157 ~LkeaG~~~v~~~lEts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl-gEt~ed~~~~~ 222 (336)
T PRK06256 157 RLKEAGVDRYNHNLETSRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGM-GESLEDRVEHA 222 (336)
T ss_pred HHHHhCCCEEecCCccCHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeC-CCCHHHHHHHH
Confidence 46667766543310 0111223457888999999999996322 344 44555544443
No 97
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=53.60 E-value=19 Score=30.48 Aligned_cols=99 Identities=16% Similarity=0.218 Sum_probs=57.5
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCeeeCcCCcCCCchHHHHHHHHhCCCCCCeEEEeccCCcCCCCCCCCCCHHHHHHHHH
Q 028264 31 YGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCE 110 (211)
Q Consensus 31 ~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~~e~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~ 110 (211)
||.+.+.++..++++..-+.|.|.+ .|+ |.++.+...||.-.+ ..+. .+.++
T Consensus 8 YG~PWs~e~R~~l~~f~~~~kmN~Y----iYA---------------PKdDpyhr~~Wre~Y--------p~~e-l~~l~ 59 (306)
T PF07555_consen 8 YGRPWSHEDRLDLIRFLGRYKMNTY----IYA---------------PKDDPYHRSKWREPY--------PEEE-LAELK 59 (306)
T ss_dssp SSS---HHHHHHHHHHHHHTT--EE----EE-----------------TT-TTTTTTTTS-----------HHH-HHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCceE----EEC---------------CCCChHHHhhhcccC--------CHHH-HHHHH
Confidence 7777788999999999999999977 788 666655555654333 2333 34455
Q ss_pred HHhhHcCCCccceEeecCCCCCC------CHHHHHHHHHHHHHcCCccEEeccc
Q 028264 111 ASLKRLDIDCIDLYYQHRVDTKI------PIEVTIGELKKLVEEGKIKYIGLSE 158 (211)
Q Consensus 111 ~sL~~Lg~~~lDl~~lh~~~~~~------~~~~~~~~l~~l~~~G~i~~iGvs~ 158 (211)
+..+.-....+|+++-=.|.... +++.+...++++.+.| ||.+||..
T Consensus 60 ~L~~~a~~~~V~Fv~aisPg~~~~~s~~~d~~~L~~K~~ql~~lG-vr~Failf 112 (306)
T PF07555_consen 60 ELADAAKANGVDFVYAISPGLDICYSSEEDFEALKAKFDQLYDLG-VRSFAILF 112 (306)
T ss_dssp HHHHHHHHTT-EEEEEEBGTTT--TSHHHHHHHHHHHHHHHHCTT---EEEEE-
T ss_pred HHHHHHHHcCCEEEEEECcccccccCcHHHHHHHHHHHHHHHhcC-CCEEEEee
Confidence 55555545557777666664332 3556788888999987 56777653
No 98
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=53.44 E-value=1e+02 Score=25.17 Aligned_cols=98 Identities=16% Similarity=0.095 Sum_probs=58.5
Q ss_pred CCHHHHHHHHHHHhhHcCCCccceEeec-CCCCC-CC----HHHHHHHHHHHHHcCCccEEecccccHHHHHHHhccCCe
Q 028264 100 GDPAYVRACCEASLKRLDIDCIDLYYQH-RVDTK-IP----IEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPI 173 (211)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh-~~~~~-~~----~~~~~~~l~~l~~~G~i~~iGvs~~~~~~l~~~~~~~~~ 173 (211)
.+.+.+.+..++.+ .-|.+.+|+---- +|+.. .+ .+.+...++.+++.-.+ -|.+-+++++.++++++...+
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~-piSIDT~~~~v~~aaL~~g~~ 98 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDV-PISVDTFNAEVAEAALKAGAD 98 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCcHHHHHHHHHhCCC
Confidence 35566666655554 5588899986322 23321 11 23455666666655233 388889999999999988744
Q ss_pred eEEccccCccccCchhhHHHHHHhh-cCchh
Q 028264 174 TAVQLEWSLWSRDVEAEIVPTCSDC-LGNLA 203 (211)
Q Consensus 174 ~~~q~~~~~~~~~~~~~l~~~~~~~-~~~i~ 203 (211)
-++-+ +..... +++++.++++ ..++.
T Consensus 99 iINdi--s~~~~~--~~~~~l~~~~~~~vV~ 125 (258)
T cd00423 99 IINDV--SGGRGD--PEMAPLAAEYGAPVVL 125 (258)
T ss_pred EEEeC--CCCCCC--hHHHHHHHHcCCCEEE
Confidence 33322 333222 4788888887 54443
No 99
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=53.35 E-value=95 Score=27.66 Aligned_cols=61 Identities=18% Similarity=0.233 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHHHHhhHcCCCccceEeecC-CC----------CCC-CHHH---HH-HHHHHHHHcCCccEEecccccH
Q 028264 99 RGDPAYVRACCEASLKRLDIDCIDLYYQHR-VD----------TKI-PIEV---TI-GELKKLVEEGKIKYIGLSEACA 161 (211)
Q Consensus 99 ~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~-~~----------~~~-~~~~---~~-~~l~~l~~~G~i~~iGvs~~~~ 161 (211)
..+.+.+++.++..++ ++++++.++.+-. |. ... +.++ .+ .+.+.|.+.|..+ +++|+|.-
T Consensus 214 gqt~e~~~~~l~~~~~-l~~~~i~~y~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~-ye~s~far 290 (453)
T PRK09249 214 KQTPESFARTLEKVLE-LRPDRLAVFNYAHVPWLFKAQRKIDEADLPSPEEKLAILQQTIETLTEAGYQY-IGMDHFAL 290 (453)
T ss_pred CCCHHHHHHHHHHHHh-cCCCEEEEccCccchhhhhHhcCCCcccCCCHHHHHHHHHHHHHHHHHCCCEE-EeccceeC
Confidence 3678888888887764 8889988887541 11 001 1222 22 4455667778765 88888764
No 100
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=53.01 E-value=33 Score=29.93 Aligned_cols=82 Identities=12% Similarity=0.133 Sum_probs=46.8
Q ss_pred HcCCCeee-----CcCCcCCCchHHHHHHHHhCCCCCCeEEEeccCCcCCC---CCCCCC----CHHHHHHHHHHHhhHc
Q 028264 49 NSGITLLD-----TSDIYGPYTNEILVGKALKGGMRERVELATKFGISFAD---GGKIRG----DPAYVRACCEASLKRL 116 (211)
Q Consensus 49 ~~Gin~~D-----tA~~Yg~g~~e~~lg~~l~~~~R~~~~i~tK~~~~~~~---~~~~~~----~~~~i~~~~~~sL~~L 116 (211)
+.+...|| ++.-+. .++..+.+.++.....=+||-||+...-.. ..+..+ ..+.|++.+.+.|++-
T Consensus 109 ~~~~~~yD~fiii~s~rf~--~ndv~La~~i~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~ 186 (376)
T PF05049_consen 109 EVKFYRYDFFIIISSERFT--ENDVQLAKEIQRMGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKA 186 (376)
T ss_dssp HTTGGG-SEEEEEESSS----HHHHHHHHHHHHTT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCT
T ss_pred HccccccCEEEEEeCCCCc--hhhHHHHHHHHHcCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHc
Confidence 44555444 333334 688888888887566678899997631100 011122 3456888899999999
Q ss_pred CCCccceEeecCCCCC
Q 028264 117 DIDCIDLYYQHRVDTK 132 (211)
Q Consensus 117 g~~~lDl~~lh~~~~~ 132 (211)
|+....+|++-+.+..
T Consensus 187 gv~~P~VFLVS~~dl~ 202 (376)
T PF05049_consen 187 GVSEPQVFLVSSFDLS 202 (376)
T ss_dssp T-SS--EEEB-TTTTT
T ss_pred CCCcCceEEEeCCCcc
Confidence 9999999999997654
No 101
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=51.63 E-value=1e+02 Score=24.66 Aligned_cols=123 Identities=8% Similarity=0.008 Sum_probs=65.4
Q ss_pred HHHHHHcCCCeeeC-cCCcCCCchHHHHHHHHhCCCCCCeEEEeccCCcCCCCCCCCCCHHHHHHHHHHHhhHcCCCccc
Q 028264 44 IHHAINSGITLLDT-SDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCID 122 (211)
Q Consensus 44 l~~A~~~Gin~~Dt-A~~Yg~g~~e~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lD 122 (211)
++...+. .|.++. +..|+. .+++.+.++.++ -++++..+-|.....+.........+.+.+.+-+.++.|| +.+.
T Consensus 12 L~~Ya~~-F~~VEvn~TFY~~-P~~~t~~~W~~~-~p~~F~F~vK~~~~iTH~~~l~~~~~~~~~~F~~~~~~L~-~klg 87 (230)
T PF01904_consen 12 LAYYARH-FNTVEVNSTFYRI-PSPETVARWREQ-TPEGFRFSVKAPQLITHERRLRDCAEELWRRFLEALEPLG-EKLG 87 (230)
T ss_dssp HHHHCCT--SEEEE-HHCCSS-S-HHHHHHHHCT-S-TT-EEEEE--CCCCCCCHCGSSHHHHHHHHHHHCHHHH-T-EE
T ss_pred HHHHHHh-CCeEEECcccCCC-CCHHHHHHHHhh-CCCCeEEEEeccHHheecccccccHHHHHHHHHHHHHHHh-hcce
Confidence 4444433 555544 335654 377778888877 5688999999875553111111235666566667999999 8999
Q ss_pred eEeecCCCCCCCHHHHHHHHHHHHHc---CCccEEeccc--ccHHHHHHHhcc
Q 028264 123 LYYQHRVDTKIPIEVTIGELKKLVEE---GKIKYIGLSE--ACAATIRRAHAV 170 (211)
Q Consensus 123 l~~lh~~~~~~~~~~~~~~l~~l~~~---G~i~~iGvs~--~~~~~l~~~~~~ 170 (211)
.+++..|.......+.++.|..+.+. |.--++=+-+ |-.+.+.++++.
T Consensus 88 ~iL~Q~Ppsf~~~~~~~~~l~~~l~~~~~~~~~avE~R~~sW~~~~~~~~l~~ 140 (230)
T PF01904_consen 88 PILFQFPPSFRFTPENLERLDAFLDRLPRGFRYAVEFRHPSWFTEEVFELLRE 140 (230)
T ss_dssp EEEEE--TT--S-HHHHHHHHHHHHHTT-TS-EEEE--BGGGGCHHHHHHHHH
T ss_pred EEEEEcCCCcCCCHHHHHHHHHHHhhcccccceEEecCCcchhhHHHHHHHHH
Confidence 99999997544445666666665554 3333444433 333455555554
No 102
>PRK12928 lipoyl synthase; Provisional
Probab=50.95 E-value=92 Score=26.07 Aligned_cols=46 Identities=11% Similarity=0.075 Sum_probs=29.1
Q ss_pred CCCHHHHHHHHHHHHHcC---CccE---EecccccHHHHHHHhcc---CCeeEEcc
Q 028264 132 KIPIEVTIGELKKLVEEG---KIKY---IGLSEACAATIRRAHAV---HPITAVQL 178 (211)
Q Consensus 132 ~~~~~~~~~~l~~l~~~G---~i~~---iGvs~~~~~~l~~~~~~---~~~~~~q~ 178 (211)
..+.++.++.++.+++.| .++. +|+ .-+.+++.+.+.. .+++.+.+
T Consensus 184 ~~t~e~~le~l~~ak~~gp~i~~~s~iIvG~-GET~ed~~etl~~Lrel~~d~v~i 238 (290)
T PRK12928 184 GADYQRSLDLLARAKELAPDIPTKSGLMLGL-GETEDEVIETLRDLRAVGCDRLTI 238 (290)
T ss_pred CCCHHHHHHHHHHHHHhCCCceecccEEEeC-CCCHHHHHHHHHHHHhcCCCEEEE
Confidence 345788899999999988 3333 577 5566655555443 44444443
No 103
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=50.89 E-value=1.6e+02 Score=25.10 Aligned_cols=149 Identities=11% Similarity=0.055 Sum_probs=83.6
Q ss_pred ChHHHHHHHHHHHHcCCCeeeCcCCcCCC-----chHHHHHHHHhCCCCCCeEEEeccCCcCCCCCCCCCCHHHHHHHHH
Q 028264 36 PEPDMIALIHHAINSGITLLDTSDIYGPY-----TNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCE 110 (211)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g-----~~e~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~ 110 (211)
+.++..+.++.+.+.|++.|-.--..+.. +.....=+++++.-.+++.|....... .+.+...+
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~~g~~~~l~vDaN~~--------~~~~~a~~--- 207 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREAVGPDVDLMVDANGR--------WDLAEAIR--- 207 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHhhCCCCEEEEECCCC--------CCHHHHHH---
Confidence 45667777888889999988753222210 112222244444223455555554322 34444433
Q ss_pred HHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCcc-EEecccccHHHHHHHhccCCeeEEccccCccc-cCch
Q 028264 111 ASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWS-RDVE 188 (211)
Q Consensus 111 ~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~-~~~~ 188 (211)
.+++|. ..++.++..|-+. +.++.+.++++.-.+. ..|=|-++++.+.++++....+++|+...-.- -...
T Consensus 208 -~~~~l~--~~~i~~iEqP~~~----~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~ 280 (357)
T cd03316 208 -LARALE--EYDLFWFEEPVPP----DDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTKVGGITEA 280 (357)
T ss_pred -HHHHhC--ccCCCeEcCCCCc----cCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCCCEEecCccccCCHHHH
Confidence 333332 1244455555332 2466677777765554 33344478889999998877888888766532 1112
Q ss_pred hhHHHHHHhh-cCch
Q 028264 189 AEIVPTCSDC-LGNL 202 (211)
Q Consensus 189 ~~l~~~~~~~-~~~i 202 (211)
.++...|+++ +.++
T Consensus 281 ~~i~~~a~~~g~~~~ 295 (357)
T cd03316 281 KKIAALAEAHGVRVA 295 (357)
T ss_pred HHHHHHHHHcCCeEe
Confidence 4788888888 5443
No 104
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=50.44 E-value=1.6e+02 Score=25.25 Aligned_cols=116 Identities=16% Similarity=0.110 Sum_probs=71.1
Q ss_pred CChHHHHHHHHHHHHcCCCeeeCcCCcCC----------------C--chHHHHHHHHhCCCCCCeEEEeccCCcCCCCC
Q 028264 35 EPEPDMIALIHHAINSGITLLDTSDIYGP----------------Y--TNEILVGKALKGGMRERVELATKFGISFADGG 96 (211)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~----------------g--~~e~~lg~~l~~~~R~~~~i~tK~~~~~~~~~ 96 (211)
.+.+...++.++|-+.|+-+|=|--.+.. | ....++....+ ..+.++++|-.
T Consensus 87 ~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~--~~kPiIlSTGm-------- 156 (347)
T COG2089 87 TPLEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAK--KGKPIILSTGM-------- 156 (347)
T ss_pred CCHHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHh--cCCCEEEEccc--------
Confidence 46677788899999999998866544430 0 12222222211 23456666655
Q ss_pred CCCCCHHHHHHHHHHHhhHcCCCccceEeecCCCCC-CCHHH-HHHHHHHHHHcCCccEEecccccHHHHHHH
Q 028264 97 KIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK-IPIEV-TIGELKKLVEEGKIKYIGLSEACAATIRRA 167 (211)
Q Consensus 97 ~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~-~~~~~-~~~~l~~l~~~G~i~~iGvs~~~~~~l~~~ 167 (211)
.+-+.+.++++...++=. .|+.++|+.... .++++ -+.+|..|.+.= ---||+|.|+..-+.-+
T Consensus 157 ---a~~~ei~~av~~~r~~g~---~~i~LLhC~s~YPap~ed~NL~~i~~l~~~F-n~~vGlSDHT~g~~a~l 222 (347)
T COG2089 157 ---ATIEEIEEAVAILRENGN---PDIALLHCTSAYPAPFEDVNLKAIPKLAEAF-NAIVGLSDHTLGILAPL 222 (347)
T ss_pred ---ccHHHHHHHHHHHHhcCC---CCeEEEEecCCCCCCHHHhhHHHHHHHHHHh-CCccccccCccchhHHH
Confidence 357778888877665543 399999997543 45544 366666665543 33499999987644333
No 105
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=49.99 E-value=1.4e+02 Score=24.15 Aligned_cols=152 Identities=15% Similarity=0.186 Sum_probs=96.9
Q ss_pred ChHHHHHHHHHHHHcCCCeeeCcCCcCCCchHHHHHHHHhCCCCCCeEEEeccCCcCCCCCCCCCCHHHHHHHHHHHhhH
Q 028264 36 PEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKR 115 (211)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~~e~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~ 115 (211)
++.+....+...+.-++.....+-.-| -+.+.+ +.+.. ...+..+.|.+. +|.....+.+.+...+.+.++.
T Consensus 11 PR~Dv~p~l~~~l~~~v~i~e~G~LDg--ls~~eI-~~~aP-~~ge~vLvTrL~----DG~~V~ls~~~v~~~lq~~i~~ 82 (221)
T PF07302_consen 11 PRTDVTPELTEILGEGVEIVEAGALDG--LSREEI-AALAP-EPGEYVLVTRLR----DGTQVVLSKKKVEPRLQACIAQ 82 (221)
T ss_pred CCchhHHHHHHHcCCCceEEEeccCCC--CCHHHH-HHhCC-CCCCceeEEEeC----CCCEEEEEHHHHHHHHHHHHHH
Confidence 556677788888888888877665544 555555 66644 356677888774 2334457999999999999999
Q ss_pred cCCCccceEeecCCCCCC---------CHHHHHHHHHHHHHcCCccEEecccccHHHHHHHhccC---CeeEEccccCcc
Q 028264 116 LDIDCIDLYYQHRVDTKI---------PIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVH---PITAVQLEWSLW 183 (211)
Q Consensus 116 Lg~~~lDl~~lh~~~~~~---------~~~~~~~~l~~l~~~G~i~~iGvs~~~~~~l~~~~~~~---~~~~~q~~~~~~ 183 (211)
|..+-.|+.++-+-.... ..+.++..+-...-.| +.+|+-.=.++|+....+++ ...+.=...||+
T Consensus 83 le~~G~d~illlCTG~F~~l~~~~~lleP~ril~~lV~al~~~--~~vGVivP~~eQ~~~~~~kW~~l~~~~~~a~asPy 160 (221)
T PF07302_consen 83 LEAQGYDVILLLCTGEFPGLTARNPLLEPDRILPPLVAALVGG--HQVGVIVPLPEQIAQQAEKWQPLGNPVVVAAASPY 160 (221)
T ss_pred HHHCCCCEEEEeccCCCCCCCCCcceeehHHhHHHHHHHhcCC--CeEEEEecCHHHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 977777888887643211 1244555555555555 67888776677776555442 123333455665
Q ss_pred ccCchhhHHHHHHhh
Q 028264 184 SRDVEAEIVPTCSDC 198 (211)
Q Consensus 184 ~~~~~~~l~~~~~~~ 198 (211)
... ...+.+++++.
T Consensus 161 ~~~-~~~l~~Aa~~L 174 (221)
T PF07302_consen 161 EGD-EEELAAAAREL 174 (221)
T ss_pred CCC-HHHHHHHHHHH
Confidence 443 24677777654
No 106
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=49.61 E-value=1.5e+02 Score=24.41 Aligned_cols=99 Identities=14% Similarity=-0.041 Sum_probs=68.0
Q ss_pred CCCCHHHHHHHHHHHhhHcCCCccceEeecCCCCC-CCHHHHHHHHHHHHHcCCccEEecccccHHHHHHHhccCCeeEE
Q 028264 98 IRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK-IPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPITAV 176 (211)
Q Consensus 98 ~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~-~~~~~~~~~l~~l~~~G~i~~iGvs~~~~~~l~~~~~~~~~~~~ 176 (211)
...+.++..+-.+-..+..+++++-|=.+..+... .++.+++++.++|.++|.+- +-+|+-++...+++.+. .++++
T Consensus 71 G~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~v-lpyc~dd~~~ar~l~~~-G~~~v 148 (248)
T cd04728 71 GCRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTV-LPYCTDDPVLAKRLEDA-GCAAV 148 (248)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHc-CCCEe
Confidence 34678888888888889999999988888776554 46789999999999999974 55777777777776665 34454
Q ss_pred ccccCccccC--c-hhhHHHHHHhh
Q 028264 177 QLEWSLWSRD--V-EAEIVPTCSDC 198 (211)
Q Consensus 177 q~~~~~~~~~--~-~~~l~~~~~~~ 198 (211)
+---+++-.+ . .++++...++.
T Consensus 149 mPlg~pIGsg~Gi~~~~~I~~I~e~ 173 (248)
T cd04728 149 MPLGSPIGSGQGLLNPYNLRIIIER 173 (248)
T ss_pred CCCCcCCCCCCCCCCHHHHHHHHHh
Confidence 4322333222 1 13555555553
No 107
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=48.53 E-value=1.5e+02 Score=25.18 Aligned_cols=107 Identities=14% Similarity=0.152 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHcCCCeeeCcCCcCCCchHHHHHHHHhCCCCCCeEEEeccCCcCCCCCCCCCCHHHHHHHHHHHhhHcC
Q 028264 38 PDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLD 117 (211)
Q Consensus 38 ~~~~~~l~~A~~~Gin~~DtA~~Yg~g~~e~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg 117 (211)
+..+++|+.+-+.|| .+|.|.. +++.+-+++.- -+..+|+|......- .+..+.--.++++...++=|
T Consensus 149 ~~Gk~lV~~~N~LgI-iiDlSH~-----s~kt~~Dvl~~--s~~PviaSHSN~~al----~~h~RNl~D~qlkaI~~~gG 216 (313)
T COG2355 149 PFGKELVREMNELGI-IIDLSHL-----SDKTFWDVLDL--SKAPVVASHSNARAL----VDHPRNLSDEQLKAIAETGG 216 (313)
T ss_pred HHHHHHHHHHHhcCC-EEEeccc-----CCccHHHHHhc--cCCceEEecCCchhc----cCCCCCCCHHHHHHHHhcCC
Confidence 447899999999998 4888864 55666666633 566778888765441 22333334445555555555
Q ss_pred CCccceEeecCC-----CCCCCHHHHHHHHHHHHHcCCccEEeccc
Q 028264 118 IDCIDLYYQHRV-----DTKIPIEVTIGELKKLVEEGKIKYIGLSE 158 (211)
Q Consensus 118 ~~~lDl~~lh~~-----~~~~~~~~~~~~l~~l~~~G~i~~iGvs~ 158 (211)
+ |.+.++-.. .+..++++..+.++..++.+=++++|+.+
T Consensus 217 v--Igv~~~~~fl~~~~~~~atldd~v~hI~h~v~~~G~dhVglGs 260 (313)
T COG2355 217 V--IGVNFIPAFLRPGGAARATLDDLVRHIDHFVELVGIDHVGLGS 260 (313)
T ss_pred E--EEEEeehhhccCCCCCCCCHHHHHHHHHHHHHhcCcceeEecc
Confidence 4 443333321 23457899999999999998899999986
No 108
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=47.72 E-value=1.7e+02 Score=24.77 Aligned_cols=133 Identities=12% Similarity=0.125 Sum_probs=77.1
Q ss_pred ChHHHHHHHHHHHHcCCCeee----------CcCCcCCC--chHHHHHHHHhCCC-CCCeEEEeccCCcCCCCCCCCCCH
Q 028264 36 PEPDMIALIHHAINSGITLLD----------TSDIYGPY--TNEILVGKALKGGM-RERVELATKFGISFADGGKIRGDP 102 (211)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~D----------tA~~Yg~g--~~e~~lg~~l~~~~-R~~~~i~tK~~~~~~~~~~~~~~~ 102 (211)
+.++..++.+.+.+.|+..+| +...||.. ...+.+.+.++... .-++-|+.|+...+.+ ..+.
T Consensus 65 ~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~----~~~~ 140 (318)
T TIGR00742 65 DPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDP----LDSY 140 (318)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCC----cchH
Confidence 667778888888889999999 44455533 33344555554411 1235588888654411 1122
Q ss_pred HHHHHHHHHHhhHcCCCccceEeecCCCC-C---CC-----H-HHHHHHHHHHHHcC-CccEEeccc-ccHHHHHHHhcc
Q 028264 103 AYVRACCEASLKRLDIDCIDLYYQHRVDT-K---IP-----I-EVTIGELKKLVEEG-KIKYIGLSE-ACAATIRRAHAV 170 (211)
Q Consensus 103 ~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~-~---~~-----~-~~~~~~l~~l~~~G-~i~~iGvs~-~~~~~l~~~~~~ 170 (211)
+.. ..+-+.++..| +|.+.+|.... . .. . .--|+...++++.- .|--||... ++.+...+.+.
T Consensus 141 ~~~-~~~~~~l~~~G---~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~- 215 (318)
T TIGR00742 141 EFL-CDFVEIVSGKG---CQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS- 215 (318)
T ss_pred HHH-HHHHHHHHHcC---CCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh-
Confidence 222 23444556666 67788897532 0 00 0 11477777887764 577777665 66777777764
Q ss_pred CCeeEEcc
Q 028264 171 HPITAVQL 178 (211)
Q Consensus 171 ~~~~~~q~ 178 (211)
..+.+|+
T Consensus 216 -g~dgVMi 222 (318)
T TIGR00742 216 -HVDGVMV 222 (318)
T ss_pred -CCCEEEE
Confidence 2445544
No 109
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=47.27 E-value=96 Score=24.88 Aligned_cols=76 Identities=16% Similarity=0.031 Sum_probs=49.6
Q ss_pred CChHHHHHHHHHHHHcCCCeeeCcCCcC-CCchHHHHHHHHhCCCCCCeEEEeccCCcCCCCCCCCCCHHHHHHHHHHHh
Q 028264 35 EPEPDMIALIHHAINSGITLLDTSDIYG-PYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASL 113 (211)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg-~g~~e~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL 113 (211)
.++++..++.+.+.++|..|+=|+..|+ .|.+.+.+....+..+ .+ +.-|..... .+.++..+-++.--
T Consensus 133 L~~e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~m~~~~~-~~--~~IKasGGI-------rt~~~a~~~i~aGA 202 (221)
T PRK00507 133 LTDEEKVKACEIAKEAGADFVKTSTGFSTGGATVEDVKLMRETVG-PR--VGVKASGGI-------RTLEDALAMIEAGA 202 (221)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhC-CC--ceEEeeCCc-------CCHHHHHHHHHcCc
Confidence 3667889999999999999999999985 3556665544333322 22 233332222 45777777777777
Q ss_pred hHcCCCc
Q 028264 114 KRLDIDC 120 (211)
Q Consensus 114 ~~Lg~~~ 120 (211)
.++|+++
T Consensus 203 ~riGtS~ 209 (221)
T PRK00507 203 TRLGTSA 209 (221)
T ss_pred ceEccCc
Confidence 7777654
No 110
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=46.95 E-value=1.6e+02 Score=24.23 Aligned_cols=126 Identities=13% Similarity=0.036 Sum_probs=63.1
Q ss_pred CCChHHHHHHHHHHHHcCCCeeeCcCCcC-------CCch-HHHHHHHHhCCCCCCeEEEeccCCcCCCCCCCCCCHHHH
Q 028264 34 PEPEPDMIALIHHAINSGITLLDTSDIYG-------PYTN-EILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYV 105 (211)
Q Consensus 34 ~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg-------~g~~-e~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i 105 (211)
..+.++..++.....+.|+..+|....-. .+.. ++.+.+..+..++.++...+...... + ...-+..+
T Consensus 17 ~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~--~--~~~~p~~~ 92 (275)
T cd07937 17 RMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLV--G--YRHYPDDV 92 (275)
T ss_pred eccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhccccccc--C--ccCCCcHH
Confidence 34667788888888899999999874210 1223 33343333334444444333311000 0 01122333
Q ss_pred -HHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCccEEec-----ccccHHHHHHHhc
Q 028264 106 -RACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGL-----SEACAATIRRAHA 169 (211)
Q Consensus 106 -~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~iGv-----s~~~~~~l~~~~~ 169 (211)
+..++.+ ...|++.+-++ .+..+++.+.+..+..++.|..-..++ +.++++.+.++.+
T Consensus 93 ~~~di~~~-~~~g~~~iri~-----~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~ 156 (275)
T cd07937 93 VELFVEKA-AKNGIDIFRIF-----DALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAK 156 (275)
T ss_pred HHHHHHHH-HHcCCCEEEEe-----ecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHH
Confidence 3333333 34455544443 122346777788888888886433333 3455555554433
No 111
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=46.39 E-value=76 Score=23.65 Aligned_cols=80 Identities=15% Similarity=0.165 Sum_probs=57.6
Q ss_pred CCCHHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHH--cCCccEEecccccHHHHHHHhccCCeeEE
Q 028264 99 RGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVE--EGKIKYIGLSEACAATIRRAHAVHPITAV 176 (211)
Q Consensus 99 ~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~--~G~i~~iGvs~~~~~~l~~~~~~~~~~~~ 176 (211)
..+.+++.+.+++..+.+|++ ++++|-.. -.++.+.+.+..+ +|.|-.=|.-++++-.++.++.....-++
T Consensus 23 ~~tl~~i~~~l~~~a~~~g~~-v~~~QSN~------Egelid~I~~a~~~~dgiIINpga~THtSvAi~DAl~~~~~P~V 95 (140)
T cd00466 23 TTTLADIEALLRELAAELGVE-VEFFQSNH------EGELIDWIHEARDGADGIIINPGAYTHTSIALRDALAAVSIPVI 95 (140)
T ss_pred cCCHHHHHHHHHHHHHHcCCE-EEEEeeCc------HHHHHHHHHHhhccCcEEEEcchHHHHHHHHHHHHHHcCCCCEE
Confidence 468999999999999999974 77776442 3467777777654 45665556667778888888888666677
Q ss_pred ccccCcccc
Q 028264 177 QLEWSLWSR 185 (211)
Q Consensus 177 q~~~~~~~~ 185 (211)
.+..|-.+.
T Consensus 96 EVHiSNi~a 104 (140)
T cd00466 96 EVHISNIHA 104 (140)
T ss_pred EEecCCccc
Confidence 777665443
No 112
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=45.99 E-value=2e+02 Score=26.17 Aligned_cols=25 Identities=4% Similarity=0.094 Sum_probs=20.9
Q ss_pred CChHHHHHHHHHHHHcCCCeeeCcC
Q 028264 35 EPEPDMIALIHHAINSGITLLDTSD 59 (211)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gin~~DtA~ 59 (211)
.+.++..++.+...+.|+..++.+.
T Consensus 20 ~s~e~K~~ia~~L~~~GV~~IEvG~ 44 (494)
T TIGR00973 20 LTVEEKLQIALALERLGVDIIEAGF 44 (494)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEEC
Confidence 4668888989998899999999764
No 113
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=45.75 E-value=1.8e+02 Score=24.48 Aligned_cols=163 Identities=11% Similarity=0.040 Sum_probs=89.6
Q ss_pred ChHHHHHHHHHHHHcCCCeeeCcCCcCC---CchHH----HHHHHHhC-----------CCCCCeEEEeccCCcCCC---
Q 028264 36 PEPDMIALIHHAINSGITLLDTSDIYGP---YTNEI----LVGKALKG-----------GMRERVELATKFGISFAD--- 94 (211)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~---g~~e~----~lg~~l~~-----------~~R~~~~i~tK~~~~~~~--- 94 (211)
.++..+++-...+++|-+.++|+. |.. |.+|+ .+.+..+. ...+...|+--+++....
T Consensus 41 ~peiv~~vh~df~~aGa~ii~T~T-Yqa~~~~~~e~~~~~~~~~l~~~sv~la~~ard~~g~~~~~iagsiGP~ga~~a~ 119 (300)
T COG2040 41 EPEIVRNVHADFLRAGADIITTAT-YQATPEGFAERVSEDEAKQLIRRSVELARAARDAYGEENQNIAGSLGPYGAALAD 119 (300)
T ss_pred CHHHHHHHHHHHHHhcCcEEeehh-hhcCHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccccccceeccchhhhcCh
Confidence 467778888888999999999884 642 22232 22222211 223334444444432210
Q ss_pred C--CCCCCCHHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCccEEeccccc---------HHH
Q 028264 95 G--GKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEAC---------AAT 163 (211)
Q Consensus 95 ~--~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~iGvs~~~---------~~~ 163 (211)
. ..-..+.+.+.+-.+.-++.+.-.-+|++-+.....-...+.+.++.++. ++=-+|+++-.+ ...
T Consensus 120 Ey~g~Y~~~~d~~~~fh~~rie~l~~ag~Dlla~ETip~i~Ea~Aiv~l~~~~---s~p~wISfT~~d~~~lr~Gt~l~e 196 (300)
T COG2040 120 EYRGDYGASQDALYKFHRPRIEALNEAGADLLACETLPNITEAEAIVQLVQEF---SKPAWISFTLNDDTRLRDGTPLSE 196 (300)
T ss_pred hhcCccCccHHHHHHHHHHHHHHHHhCCCcEEeecccCChHHHHHHHHHHHHh---CCceEEEEEeCCCCccCCCccHHH
Confidence 0 11234566677777888888877779999887654433334455555555 777778877431 222
Q ss_pred HHHHhccC-CeeEEccccCccccCchhhHHHHH-Hhh--cCchhh
Q 028264 164 IRRAHAVH-PITAVQLEWSLWSRDVEAEIVPTC-SDC--LGNLAL 204 (211)
Q Consensus 164 l~~~~~~~-~~~~~q~~~~~~~~~~~~~l~~~~-~~~--~~~i~~ 204 (211)
+..+++.. ++....++|.-.+.- +.+++.. ... ++++.|
T Consensus 197 aa~~~~~~~~iaa~gvNC~~p~~~--~a~i~~l~~~~~~~piivY 239 (300)
T COG2040 197 AAAILAGLPNIAALGVNCCHPDHI--PAAIEELSKLLTGKPIIVY 239 (300)
T ss_pred HHHHHhcCcchhheeeccCChhhh--HHHHHHHHhcCCCCceEEc
Confidence 33333332 455555555544443 4566655 333 555555
No 114
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=45.71 E-value=97 Score=23.27 Aligned_cols=79 Identities=18% Similarity=0.193 Sum_probs=56.4
Q ss_pred CCCHHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHH--cCCccEEecccccHHHHHHHhccCCeeEE
Q 028264 99 RGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVE--EGKIKYIGLSEACAATIRRAHAVHPITAV 176 (211)
Q Consensus 99 ~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~--~G~i~~iGvs~~~~~~l~~~~~~~~~~~~ 176 (211)
..+.+.+.+.+++..+.+|++ ++++|-.. -.++.+.+.+..+ +|.|-.=|--++++-.++.+++....-++
T Consensus 25 ~~tl~~i~~~~~~~a~~~g~~-~~~~QSN~------EGelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~~~~P~V 97 (146)
T PRK13015 25 HETLADVEALCRAAAEALGLE-VEFRQSNH------EGELIDWIHEARGDVAGIVINPGAYTHTSVAIRDALAALELPVI 97 (146)
T ss_pred CCCHHHHHHHHHHHHHHcCCE-EEEEeeCc------HHHHHHHHHHhhhcCCEEEEcchHHhhhHHHHHHHHHcCCCCEE
Confidence 458999999999999999974 66665442 3467777776644 46666666667778888888888665566
Q ss_pred ccccCccc
Q 028264 177 QLEWSLWS 184 (211)
Q Consensus 177 q~~~~~~~ 184 (211)
.+..|-.+
T Consensus 98 EVHiSNi~ 105 (146)
T PRK13015 98 EVHISNVH 105 (146)
T ss_pred EEEcCCcc
Confidence 77666444
No 115
>PRK08508 biotin synthase; Provisional
Probab=45.64 E-value=1.7e+02 Score=24.13 Aligned_cols=22 Identities=9% Similarity=-0.011 Sum_probs=17.7
Q ss_pred CChHHHHHHHHHHHHcCCCeee
Q 028264 35 EPEPDMIALIHHAINSGITLLD 56 (211)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gin~~D 56 (211)
.+.+++.+.++.|.+.|++-|-
T Consensus 40 ~s~eeI~~~a~~a~~~g~~~~~ 61 (279)
T PRK08508 40 KDIEQIVQEAKMAKANGALGFC 61 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEE
Confidence 3678888888888889997664
No 116
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=45.31 E-value=1.7e+02 Score=23.96 Aligned_cols=96 Identities=16% Similarity=0.069 Sum_probs=58.0
Q ss_pred CCHHHHHHHHHHHhhHcCCCccceEe-ecCCCCC-CCHH----HHHHHHHHHHHc-CCccEEecccccHHHHHHHhccCC
Q 028264 100 GDPAYVRACCEASLKRLDIDCIDLYY-QHRVDTK-IPIE----VTIGELKKLVEE-GKIKYIGLSEACAATIRRAHAVHP 172 (211)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~-lh~~~~~-~~~~----~~~~~l~~l~~~-G~i~~iGvs~~~~~~l~~~~~~~~ 172 (211)
.+++.+.+..++.+ .-|.+++|+-- --+|+.. .+.+ .+...++.+++. +. -+.+-+++++.++++++.+.
T Consensus 20 ~~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~--plsiDT~~~~vi~~al~~G~ 96 (257)
T TIGR01496 20 LSVDKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDV--PISVDTYRAEVARAALEAGA 96 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC--eEEEeCCCHHHHHHHHHcCC
Confidence 35666666655554 45889999942 2234322 2222 255555566655 43 37888899999999998865
Q ss_pred eeEEccccCccccCchhhHHHHHHhh-cCchh
Q 028264 173 ITAVQLEWSLWSRDVEAEIVPTCSDC-LGNLA 203 (211)
Q Consensus 173 ~~~~q~~~~~~~~~~~~~l~~~~~~~-~~~i~ 203 (211)
.-++-+.. .. . +++++.++++ ..++.
T Consensus 97 ~iINsis~--~~-~--~~~~~l~~~~~~~vV~ 123 (257)
T TIGR01496 97 DIINDVSG--GQ-D--PAMLEVAAEYGVPLVL 123 (257)
T ss_pred CEEEECCC--CC-C--chhHHHHHHcCCcEEE
Confidence 44443332 22 2 4788888887 55554
No 117
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=45.18 E-value=1.3e+02 Score=22.51 Aligned_cols=89 Identities=13% Similarity=0.002 Sum_probs=64.3
Q ss_pred CCHHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCc-cEEecccccHHHHHHHhccCCeeEEcc
Q 028264 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKI-KYIGLSEACAATIRRAHAVHPITAVQL 178 (211)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i-~~iGvs~~~~~~l~~~~~~~~~~~~q~ 178 (211)
...-.+++.+.+-|+..|-+.+|+=. +. ++..++.+.-..+.+.+.+|.. +.|-+|......-..+-+...+.+.++
T Consensus 7 haG~~lK~~l~~~L~~~g~eV~D~G~-~~-~~~~dYpd~a~~va~~V~~g~~~~GIliCGtGiG~siaANK~~GIraa~~ 84 (144)
T TIGR00689 7 HAGLELKSEIIEHLKQKGHEVIDCGT-LY-DERVDYPDYAKLVADKVVAGEVSLGILICGTGIGMSIAANKFKGIRAALC 84 (144)
T ss_pred cchHHHHHHHHHHHHHCCCEEEEcCC-CC-CCCCChHHHHHHHHHHHHcCCCceEEEEcCCcHHHHHHHhcCCCeEEEEE
Confidence 45677999999999999988888853 22 2336778888899999999998 789999988776666666655555433
Q ss_pred ccCccccCchhhHHHHHHhh
Q 028264 179 EWSLWSRDVEAEIVPTCSDC 198 (211)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~~~ 198 (211)
.+ +.-...+++|
T Consensus 85 ------~d--~~~A~~ar~h 96 (144)
T TIGR00689 85 ------VD--EYTAALARQH 96 (144)
T ss_pred ------CC--HHHHHHHHHh
Confidence 12 2445556655
No 118
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=44.97 E-value=2e+02 Score=24.62 Aligned_cols=24 Identities=8% Similarity=0.119 Sum_probs=20.9
Q ss_pred CChHHHHHHHHHHHHcCCCeeeCc
Q 028264 35 EPEPDMIALIHHAINSGITLLDTS 58 (211)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gin~~DtA 58 (211)
.+.++..++++..-++|+..++.+
T Consensus 21 f~~~~~~~ia~~Ld~aGV~~IEvg 44 (333)
T TIGR03217 21 FTIEQVRAIAAALDEAGVDAIEVT 44 (333)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe
Confidence 467888999999899999999995
No 119
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=44.26 E-value=84 Score=28.15 Aligned_cols=54 Identities=17% Similarity=0.158 Sum_probs=39.7
Q ss_pred CCCHHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCccEEeccc
Q 028264 99 RGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSE 158 (211)
Q Consensus 99 ~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~iGvs~ 158 (211)
..+.+...+.+.+.|+.||++ .|-++ ......+..-+++++|+++|++ |...|+
T Consensus 47 ~Rs~~~~~~~I~e~L~wLGI~-~De~y----~QSer~~~y~~~~e~L~e~G~A-Y~C~Ct 100 (445)
T PRK12558 47 ERSKQEYADAIAEDLKWLGIN-WDRTF----RQSDRFDRYDEAAEKLKAAGRL-YPCYET 100 (445)
T ss_pred ccchHHHHHHHHHHHHHcCCC-CCccc----cHHHHHHHHHHHHHHHHHCCCE-EEecCc
Confidence 456788999999999999997 47431 1222245567888999999996 667766
No 120
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=44.07 E-value=1.3e+02 Score=24.74 Aligned_cols=119 Identities=13% Similarity=0.046 Sum_probs=58.9
Q ss_pred ChHHHHHHHHHHHHcCCCeee--CcCCcCCCc-hHHHHHHHHhCCCCCCeEEEeccCCcCCCCCCCCCCHHHHHHHHHHH
Q 028264 36 PEPDMIALIHHAINSGITLLD--TSDIYGPYT-NEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEAS 112 (211)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~D--tA~~Yg~g~-~e~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~s 112 (211)
+.++..+.++.+.+.|++.|- ++..+.... .++.+.+..+...+-.+.+....+ ..+++ .-+.
T Consensus 63 ~~eei~~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~~i~~~~~~g---------~~~~e-----~l~~ 128 (296)
T TIGR00433 63 KVDEVLEEARKAKAAGATRFCLVASGRGPKDREFMEYVEAMVQIVEEMGLKTCATLG---------LLDPE-----QAKR 128 (296)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEEecCCCChHHHHHHHHHHHHHHHhCCCeEEecCC---------CCCHH-----HHHH
Confidence 455566666666788987542 322222111 233444333221222333322111 12332 3345
Q ss_pred hhHcCCCccceEeecC------CCCCCCHHHHHHHHHHHHHcCCcc----EEecccccHHHHHHHhc
Q 028264 113 LKRLDIDCIDLYYQHR------VDTKIPIEVTIGELKKLVEEGKIK----YIGLSEACAATIRRAHA 169 (211)
Q Consensus 113 L~~Lg~~~lDl~~lh~------~~~~~~~~~~~~~l~~l~~~G~i~----~iGvs~~~~~~l~~~~~ 169 (211)
|+..|++.+-+-+=.. .....++++.+++++.+++.|.-- -+|+ +.+.+.+.+.+.
T Consensus 129 Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl-~et~~d~~~~~~ 194 (296)
T TIGR00433 129 LKDAGLDYYNHNLDTSQEFYSNIISTHTYDDRVDTLENAKKAGLKVCSGGIFGL-GETVEDRIGLAL 194 (296)
T ss_pred HHHcCCCEEEEcccCCHHHHhhccCCCCHHHHHHHHHHHHHcCCEEEEeEEEeC-CCCHHHHHHHHH
Confidence 6666776543321111 112346788999999999998632 2666 556665555443
No 121
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=43.51 E-value=1.3e+02 Score=24.67 Aligned_cols=71 Identities=15% Similarity=0.066 Sum_probs=52.1
Q ss_pred CCCHHHHHHHHHHHhhHcCCCccceEeecCCCCC-CCHHHHHHHHHHHHHcCCccEEecccccHHHHHHHhcc
Q 028264 99 RGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK-IPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV 170 (211)
Q Consensus 99 ~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~-~~~~~~~~~l~~l~~~G~i~~iGvs~~~~~~l~~~~~~ 170 (211)
..+.++.....+-..+.++++++-+=.+-.++.- .+.-+++++.|.|+++|-+- .--++-++-.-+++.+.
T Consensus 79 c~taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~V-lPY~~dD~v~arrLee~ 150 (262)
T COG2022 79 CRTAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVV-LPYTTDDPVLARRLEEA 150 (262)
T ss_pred cCCHHHHHHHHHHHHHHccCCeEEEEEecCCcccCCChHHHHHHHHHHHhCCCEE-eeccCCCHHHHHHHHhc
Confidence 4678888888888999999999998888776654 35679999999999999863 33344444444444443
No 122
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=43.40 E-value=2e+02 Score=24.12 Aligned_cols=95 Identities=11% Similarity=-0.015 Sum_probs=54.1
Q ss_pred CCCeEEEeccCCcCCCCCCCCCCHHHHHHHHHHHhhHcCCCccceEeecCCCCCCC----------HHHHHHHHHHHHHc
Q 028264 79 RERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIP----------IEVTIGELKKLVEE 148 (211)
Q Consensus 79 R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~----------~~~~~~~l~~l~~~ 148 (211)
.+++.|..|+...... ....+.+...+ +-+.|+..|+++++ ++......+ ....++.+.++++.
T Consensus 206 g~d~~i~vris~~~~~--~~g~~~~e~~~-la~~l~~~G~d~i~---vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~ 279 (327)
T cd02803 206 GPDFPVGVRLSADDFV--PGGLTLEEAIE-IAKALEEAGVDALH---VSGGSYESPPPIIPPPYVPEGYFLELAEKIKKA 279 (327)
T ss_pred CCCceEEEEechhccC--CCCCCHHHHHH-HHHHHHHcCCCEEE---eCCCCCcccccccCCCCCCcchhHHHHHHHHHH
Confidence 4578899998754310 01134444433 34455677865554 444322111 12334555666665
Q ss_pred CCccEEecccc-cHHHHHHHhccCCeeEEccc
Q 028264 149 GKIKYIGLSEA-CAATIRRAHAVHPITAVQLE 179 (211)
Q Consensus 149 G~i~~iGvs~~-~~~~l~~~~~~~~~~~~q~~ 179 (211)
=.+--++..+. +++.++++++....+.+++-
T Consensus 280 ~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~ig 311 (327)
T cd02803 280 VKIPVIAVGGIRDPEVAEEILAEGKADLVALG 311 (327)
T ss_pred CCCCEEEeCCCCCHHHHHHHHHCCCCCeeeec
Confidence 45555666664 58889999988777777764
No 123
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=43.35 E-value=35 Score=24.16 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=24.2
Q ss_pred ChHHHHHHHHHHHHcCCCeeeCcCCcC
Q 028264 36 PEPDMIALIHHAINSGITLLDTSDIYG 62 (211)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg 62 (211)
+.+.+.++...+++.|++.||.+..|.
T Consensus 75 ~~~~~~~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 75 PHGASKELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp CHHHHHHHHHHHHHTTSEEEESSSTTT
T ss_pred chhHHHHHHHHHhhCCcEEEeCCHHHh
Confidence 567788999999999999999999885
No 124
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=43.21 E-value=57 Score=26.59 Aligned_cols=73 Identities=15% Similarity=0.125 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHcCCccEEecccccHHHHHHHhcc----CCeeEEccccCccccCchhhHHHHHHhhcCchhhhhhhh
Q 028264 135 IEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV----HPITAVQLEWSLWSRDVEAEIVPTCSDCLGNLALELLRM 209 (211)
Q Consensus 135 ~~~~~~~l~~l~~~G~i~~iGvs~~~~~~l~~~~~~----~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~ 209 (211)
.+...+.+.+++++|. .+|+-++--+.++.++.. ..++.+-..|-.--..|.+.++..|-+++++.+-..+++
T Consensus 115 ~~~~~~~lq~lR~~g~--~l~iisN~d~r~~~~l~~~~l~~~fD~vv~S~e~g~~KPDp~If~~al~~l~v~Pee~vhI 191 (237)
T KOG3085|consen 115 LDGMQELLQKLRKKGT--ILGIISNFDDRLRLLLLPLGLSAYFDFVVESCEVGLEKPDPRIFQLALERLGVKPEECVHI 191 (237)
T ss_pred ccHHHHHHHHHHhCCe--EEEEecCCcHHHHHHhhccCHHHhhhhhhhhhhhccCCCChHHHHHHHHHhCCChHHeEEe
Confidence 3456699999999993 367544333444444433 234554455555555566799999998877776555544
No 125
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=43.10 E-value=1.1e+02 Score=27.04 Aligned_cols=135 Identities=17% Similarity=0.129 Sum_probs=78.6
Q ss_pred ChHHHHHHHHHHHHcCCC-eeeCcCCcCCCchHHHHHHHH-hC--CC-----CCCeEEEeccCCcCCCCCCCCCCHHHHH
Q 028264 36 PEPDMIALIHHAINSGIT-LLDTSDIYGPYTNEILVGKAL-KG--GM-----RERVELATKFGISFADGGKIRGDPAYVR 106 (211)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin-~~DtA~~Yg~g~~e~~lg~~l-~~--~~-----R~~~~i~tK~~~~~~~~~~~~~~~~~i~ 106 (211)
+.+.=.+-++.|++.|-. ..|-+. .| .-..+-+.+ +. .| --+.++-.. +...+.+.+.+.
T Consensus 75 d~~~E~~K~~~A~~~GADtiMDLSt-Gg---dl~~iR~~il~~s~vpvGTVPiYqa~~~~~-------~~~~~mt~d~~~ 143 (423)
T TIGR00190 75 DIEEEVEKALIAIKYGADTVMDLST-GG---DLDEIRKAILDAVPVPVGTVPIYQAAEKVH-------GAVEDMDEDDMF 143 (423)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeccC-CC---CHHHHHHHHHHcCCCCccCccHHHHHHHhc-------CChhhCCHHHHH
Confidence 334444558999999975 555553 23 333333333 22 11 111110000 012346788888
Q ss_pred HHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCccEEecccccHHHHHHHhccCCeeEEccccCccccC
Q 028264 107 ACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPITAVQLEWSLWSRD 186 (211)
Q Consensus 107 ~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~ 186 (211)
+.+++..+ +-+|++.+|+- -+.+.++.++++|.+ .|+-+-...-+.+++... -.=||+...
T Consensus 144 ~~ie~qa~----dGVDfmTiH~G-------i~~~~~~~~~~~~R~--~giVSRGGs~~~~WM~~~------~~ENPlye~ 204 (423)
T TIGR00190 144 RAIEKQAK----DGVDFMTIHAG-------VLLEYVERLKRSGRI--TGIVSRGGAILAAWMLHH------HKENPLYKN 204 (423)
T ss_pred HHHHHHHH----hCCCEEEEccc-------hhHHHHHHHHhCCCc--cCeecCcHHHHHHHHHHc------CCcCchHHH
Confidence 88877765 45788999973 267888899999865 777766666555554332 223455554
Q ss_pred chhhHHHHHHhh-cCc
Q 028264 187 VEAEIVPTCSDC-LGN 201 (211)
Q Consensus 187 ~~~~l~~~~~~~-~~~ 201 (211)
. +++++-|+++ +++
T Consensus 205 f-D~lLeI~~~yDVtl 219 (423)
T TIGR00190 205 F-DYILEIAKEYDVTL 219 (423)
T ss_pred H-HHHHHHHHHhCeee
Confidence 3 5788888887 544
No 126
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=42.24 E-value=2.4e+02 Score=25.66 Aligned_cols=100 Identities=8% Similarity=0.050 Sum_probs=56.1
Q ss_pred hHHHHHHHHhC----CCCCCeEEEeccCCcCCCCCCCCCCHHHHHHHHHHHhhHcCCCccceEeecCCCCCCCH----HH
Q 028264 66 NEILVGKALKG----GMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPI----EV 137 (211)
Q Consensus 66 ~e~~lg~~l~~----~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~----~~ 137 (211)
+++.+-+++++ .+.+-++|.+-.- .+-|-..++...+.++.+.+.++.++.|+..... +.
T Consensus 69 ~~~~L~~aI~~~~~~~~P~~I~V~sTC~------------selIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~~~g~~~ 136 (511)
T TIGR01278 69 SQTRLVDTVRRVDDRFKPDLIVVTPSCT------------SSLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKENQAADR 136 (511)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEeCCCh------------HHHhccCHHHHHHHhccCCCcEEEecCCCcccchhHHHHH
Confidence 56677777766 2233344444432 3334444555555555445889999998755432 22
Q ss_pred HHHHHHH-H----------HHcCCccEEeccc------ccHHHHHHHhccCCeeEEc
Q 028264 138 TIGELKK-L----------VEEGKIKYIGLSE------ACAATIRRAHAVHPITAVQ 177 (211)
Q Consensus 138 ~~~~l~~-l----------~~~G~i~~iGvs~------~~~~~l~~~~~~~~~~~~q 177 (211)
+++++-+ + .+.+.|.=||.++ .+..++.++++...+.++.
T Consensus 137 al~~lv~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~ 193 (511)
T TIGR01278 137 TLTQLVRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNV 193 (511)
T ss_pred HHHHHHHHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEE
Confidence 3332221 1 1245577788876 2456788888875555544
No 127
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=41.95 E-value=2.5e+02 Score=24.88 Aligned_cols=49 Identities=18% Similarity=0.206 Sum_probs=33.8
Q ss_pred CChHHHHHHHHHHHHcCCCeeeCcCCcCCC----chHHHHHHHHhC-----CCCCCeEEEecc
Q 028264 35 EPEPDMIALIHHAINSGITLLDTSDIYGPY----TNEILVGKALKG-----GMRERVELATKF 88 (211)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g----~~e~~lg~~l~~-----~~R~~~~i~tK~ 88 (211)
...+++.+++..|+++|- .+.|+.. .+.+.+.+.+.. ...+++|+++-.
T Consensus 78 ~ts~~a~~Av~~al~Sgk-----~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC 135 (447)
T KOG0259|consen 78 RTSQEAEQAVVDALRSGK-----GNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGC 135 (447)
T ss_pred cCCHHHHHHHHHHHhcCC-----CCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccc
Confidence 345778899999999983 2467643 466667777644 457888888754
No 128
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=41.42 E-value=8.5 Score=37.48 Aligned_cols=33 Identities=9% Similarity=0.139 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhhHcCCCccceEeecCCCCCCC
Q 028264 102 PAYVRACCEASLKRLDIDCIDLYYQHRVDTKIP 134 (211)
Q Consensus 102 ~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~ 134 (211)
...=++++.......+-+++|||-|..|+.+-.
T Consensus 6 ~~~eRe~la~iiqqWNaNRLDLF~lS~PtEdLe 38 (1629)
T KOG1892|consen 6 RDEEREKLADIIQQWNANRLDLFELSQPTEDLE 38 (1629)
T ss_pred hhhHHHHHHHHHHHhcccccceeeccCCCccce
Confidence 455678899999999999999999999976543
No 129
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=40.91 E-value=2e+02 Score=23.57 Aligned_cols=135 Identities=19% Similarity=0.174 Sum_probs=78.9
Q ss_pred ChHHHHHHHHHHHHcCCCeeeCcCCc---CC----CchHHHHHHHHhCCCC-CCeEEEeccCCcCCCCCCCCCCHHHHHH
Q 028264 36 PEPDMIALIHHAINSGITLLDTSDIY---GP----YTNEILVGKALKGGMR-ERVELATKFGISFADGGKIRGDPAYVRA 107 (211)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~DtA~~Y---g~----g~~e~~lg~~l~~~~R-~~~~i~tK~~~~~~~~~~~~~~~~~i~~ 107 (211)
+.++..+..+.+.+.|+..|+.--.. .. ++..+.+.+.++.+.+ -++-|..|+.... +.+++.+
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~--------~~~~~~~ 180 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYF--------DLEDIVE 180 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCC--------CHHHHHH
Confidence 45677888888889999988853221 11 1234555555544221 1566888987543 4455554
Q ss_pred HHHHHhhHcCCCccceEeecCCCC-------------CC--------CH-HHHHHHHHHHHHcC--CccEEecccc-cHH
Q 028264 108 CCEASLKRLDIDCIDLYYQHRVDT-------------KI--------PI-EVTIGELKKLVEEG--KIKYIGLSEA-CAA 162 (211)
Q Consensus 108 ~~~~sL~~Lg~~~lDl~~lh~~~~-------------~~--------~~-~~~~~~l~~l~~~G--~i~~iGvs~~-~~~ 162 (211)
-++ .++..|. |.+.+|.-.. .. .. .-.++.+.++++.= .+--||.... +++
T Consensus 181 ~a~-~l~~~Ga---d~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~~ 256 (289)
T cd02810 181 LAK-AAERAGA---DGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSGE 256 (289)
T ss_pred HHH-HHHHcCC---CEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCHH
Confidence 444 4566775 4455553110 00 00 12467777777653 6777888874 578
Q ss_pred HHHHHhccCCeeEEccccCcc
Q 028264 163 TIRRAHAVHPITAVQLEWSLW 183 (211)
Q Consensus 163 ~l~~~~~~~~~~~~q~~~~~~ 183 (211)
.+.+++... .+.+|+-=.++
T Consensus 257 da~~~l~~G-Ad~V~vg~a~~ 276 (289)
T cd02810 257 DVLEMLMAG-ASAVQVATALM 276 (289)
T ss_pred HHHHHHHcC-ccHheEcHHHH
Confidence 888888754 67777654443
No 130
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=40.86 E-value=1.2e+02 Score=23.73 Aligned_cols=70 Identities=24% Similarity=0.299 Sum_probs=44.9
Q ss_pred ChHHHHHHHHHHHHcCCCeeeCcCCcCC-Cch-H--HHHHHHHhCCCCCCeEEEeccCCcCCCCCCCCCCHHHHHHHHHH
Q 028264 36 PEPDMIALIHHAINSGITLLDTSDIYGP-YTN-E--ILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEA 111 (211)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~-g~~-e--~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~ 111 (211)
++++...+.+.|.++|..|+=|+..|.. |-+ | +.+.+.++ .. +-.|..-.. .+.++..+-++.
T Consensus 129 ~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~----~~--v~ik~aGGi-------kt~~~~l~~~~~ 195 (203)
T cd00959 129 TDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVG----GR--VGVKAAGGI-------RTLEDALAMIEA 195 (203)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhC----CC--ceEEEeCCC-------CCHHHHHHHHHh
Confidence 4678899999999999999999977752 211 2 44555553 11 344443222 256777777776
Q ss_pred HhhHcCC
Q 028264 112 SLKRLDI 118 (211)
Q Consensus 112 sL~~Lg~ 118 (211)
-..|+|+
T Consensus 196 g~~riG~ 202 (203)
T cd00959 196 GATRIGT 202 (203)
T ss_pred ChhhccC
Confidence 6677765
No 131
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=40.05 E-value=1.3e+02 Score=26.64 Aligned_cols=138 Identities=14% Similarity=0.111 Sum_probs=79.5
Q ss_pred ChHHHHHHHHHHHHcCCC-eeeCcCCcCCCchHHHHHHHH-hC--CCC-----CCeEEEeccCCcCCCCCCCCCCHHHHH
Q 028264 36 PEPDMIALIHHAINSGIT-LLDTSDIYGPYTNEILVGKAL-KG--GMR-----ERVELATKFGISFADGGKIRGDPAYVR 106 (211)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin-~~DtA~~Yg~g~~e~~lg~~l-~~--~~R-----~~~~i~tK~~~~~~~~~~~~~~~~~i~ 106 (211)
+.+.=.+-++.|++.|-. ..|-+. .| .-..+-+.+ +. .|- -+.++ +. ....+...+.+.+.+.
T Consensus 75 d~~~E~~K~~~A~~~GADtiMDLSt-gg---dl~~iR~~il~~s~vpvGTVPiYqa~~--~~--~~k~~~~~~mt~d~~~ 146 (431)
T PRK13352 75 DIEEELEKAKVAVKYGADTIMDLST-GG---DLDEIRRAIIEASPVPVGTVPIYQAAV--EA--ARKYGSVVDMTEDDLF 146 (431)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeccC-CC---CHHHHHHHHHHcCCCCCcChhHHHHHH--HH--HhcCCChhhCCHHHHH
Confidence 444444568999999975 455543 23 333333333 32 110 01110 00 0000122356788888
Q ss_pred HHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCccEEecccccHHHHHHHhccCCeeEEccccCccccC
Q 028264 107 ACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPITAVQLEWSLWSRD 186 (211)
Q Consensus 107 ~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~ 186 (211)
+.+++..+ +-+|++.+|+- -+.+.++.++++|.+ .|+-+-...-+..++.... .=||+...
T Consensus 147 ~~ie~qa~----~GVDfmTiHcG-------i~~~~~~~~~~~~R~--~giVSRGGs~~~~WM~~n~------~ENPlye~ 207 (431)
T PRK13352 147 DVIEKQAK----DGVDFMTIHCG-------VTRETLERLKKSGRI--MGIVSRGGSFLAAWMLHNN------KENPLYEH 207 (431)
T ss_pred HHHHHHHH----hCCCEEEEccc-------hhHHHHHHHHhcCCc--cCeecCCHHHHHHHHHHcC------CcCchHHH
Confidence 88877765 45789999984 267888899998865 7777766665555543321 33555555
Q ss_pred chhhHHHHHHhh-cCc
Q 028264 187 VEAEIVPTCSDC-LGN 201 (211)
Q Consensus 187 ~~~~l~~~~~~~-~~~ 201 (211)
. +++++-|+++ +++
T Consensus 208 f-D~lLeI~~~yDVtl 222 (431)
T PRK13352 208 F-DYLLEILKEYDVTL 222 (431)
T ss_pred H-HHHHHHHHHhCeee
Confidence 4 5788888888 554
No 132
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=39.62 E-value=69 Score=24.47 Aligned_cols=64 Identities=20% Similarity=0.125 Sum_probs=37.7
Q ss_pred HHHHHHHHhhHcCCCcc----ceEeecCCCCCCCHHHHHHHHHHHHHcCCccEEecccccHHHHHHHhcc
Q 028264 105 VRACCEASLKRLDIDCI----DLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV 170 (211)
Q Consensus 105 i~~~~~~sL~~Lg~~~l----Dl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~iGvs~~~~~~l~~~~~~ 170 (211)
.++.++..++.+|.+.- +.+.-.+ .......++.+.|++|++.|. +-.-+||.+...++..++.
T Consensus 61 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~L~~~g~-~~~i~Sn~~~~~~~~~l~~ 128 (198)
T TIGR01428 61 TREALRYLLGRLGLEDDESAADRLAEAY-LRLPPHPDVPAGLRALKERGY-RLAILSNGSPAMLKSLVKH 128 (198)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHH-hcCCCCCCHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHH
Confidence 34556667777776521 1111111 112234577888999999884 4455777777777766665
No 133
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=38.53 E-value=2.2e+02 Score=23.69 Aligned_cols=65 Identities=15% Similarity=0.052 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhhHcCCCccceEeecCCCCCCCH---HHHHHHHHHHHHcCCccEEecccccHHHHHHHhcc
Q 028264 103 AYVRACCEASLKRLDIDCIDLYYQHRVDTKIPI---EVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV 170 (211)
Q Consensus 103 ~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~---~~~~~~l~~l~~~G~i~~iGvs~~~~~~l~~~~~~ 170 (211)
...++.+.-.+.-++ ..+++++..|....|. .++++.|.++.++|. +.|=+|+|..+.++++.+.
T Consensus 139 ~G~kqrl~ia~aL~~--~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~-~tvlissH~l~e~~~~~d~ 206 (293)
T COG1131 139 GGMKQRLSIALALLH--DPELLILDEPTSGLDPESRREIWELLRELAKEGG-VTILLSTHILEEAEELCDR 206 (293)
T ss_pred HHHHHHHHHHHHHhc--CCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCC-cEEEEeCCcHHHHHHhCCE
Confidence 445666666666665 3699999999766654 578999999999996 5688999999999988653
No 134
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=38.28 E-value=71 Score=22.94 Aligned_cols=63 Identities=13% Similarity=0.045 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCccEEecccccHHHHHHHh
Q 028264 99 RGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAH 168 (211)
Q Consensus 99 ~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~iGvs~~~~~~l~~~~ 168 (211)
+.+.+.+.+.+++.|+..+.+.-++-.+-.++...+-..+.+..+++. +.+-.|++++|....
T Consensus 11 ~~~~~~i~~ai~~~l~~~~~~~~~i~~iasi~~K~~E~~l~~~A~~l~-------~~~~~~~~eeL~~~~ 73 (121)
T PF01890_consen 11 GAPAEEIEEAIEQALAEAGLSPRSIAAIASIDIKADEPGLLELAEELG-------IPLRFFSAEELNAVE 73 (121)
T ss_dssp S--HHHHHHHHHHHHHHCT--GGGEEEEEESSSSS--HHHHHHHHHCT-------SEEEEE-HHHHHCHH
T ss_pred CCCHHHHHHHHHHHHHHcCCChhhccEEEeccccCCCHHHHHHHHHhC-------CCeEEECHHHHhcCC
Confidence 468999999999999999998888888888876654444444333322 445567788777665
No 135
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=38.15 E-value=1.1e+02 Score=24.20 Aligned_cols=92 Identities=11% Similarity=0.116 Sum_probs=51.4
Q ss_pred HHHHHHHh--hHcCCCccceEeec-CCCC-CCC----HHHHHHHHHHHHH--cCCccEEecccccHHHHHHHhccCCeeE
Q 028264 106 RACCEASL--KRLDIDCIDLYYQH-RVDT-KIP----IEVTIGELKKLVE--EGKIKYIGLSEACAATIRRAHAVHPITA 175 (211)
Q Consensus 106 ~~~~~~sL--~~Lg~~~lDl~~lh-~~~~-~~~----~~~~~~~l~~l~~--~G~i~~iGvs~~~~~~l~~~~~~~~~~~ 175 (211)
.+.+++.. ..-|.+++|+---- +|.. ..+ ++.+...++.+++ .+. -+.+-+++++.++++++. ..++
T Consensus 19 ~~a~~~a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~--plSIDT~~~~v~~~aL~~-g~~~ 95 (210)
T PF00809_consen 19 DEAVKRAREQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDV--PLSIDTFNPEVAEAALKA-GADI 95 (210)
T ss_dssp HHHHHHHHHHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTS--EEEEEESSHHHHHHHHHH-TSSE
T ss_pred HHHHHHHHHHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCe--EEEEECCCHHHHHHHHHc-Ccce
Confidence 33444443 34488999996332 1221 122 2344555556664 333 388888999999999988 3233
Q ss_pred EccccCccccCchhhHHHHHHhh-cCchh
Q 028264 176 VQLEWSLWSRDVEAEIVPTCSDC-LGNLA 203 (211)
Q Consensus 176 ~q~~~~~~~~~~~~~l~~~~~~~-~~~i~ 203 (211)
+-...+. .. .+++++.++++ ..+|.
T Consensus 96 ind~~~~-~~--~~~~~~l~a~~~~~vV~ 121 (210)
T PF00809_consen 96 INDISGF-ED--DPEMLPLAAEYGAPVVL 121 (210)
T ss_dssp EEETTTT-SS--STTHHHHHHHHTSEEEE
T ss_pred EEecccc-cc--cchhhhhhhcCCCEEEE
Confidence 2222222 11 25899999998 55544
No 136
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=38.06 E-value=1e+02 Score=23.10 Aligned_cols=80 Identities=16% Similarity=0.214 Sum_probs=56.4
Q ss_pred CCCHHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHH--cCCccEEecccccHHHHHHHhccCCeeEE
Q 028264 99 RGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVE--EGKIKYIGLSEACAATIRRAHAVHPITAV 176 (211)
Q Consensus 99 ~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~--~G~i~~iGvs~~~~~~l~~~~~~~~~~~~ 176 (211)
..+.+++.+.+++..+.+|++ ++++|-.. -.++.+.+.+..+ +|.|-.=|.-++++-.++.+++..+.-++
T Consensus 25 ~~tl~~i~~~~~~~a~~~g~~-v~~~QSN~------EGelId~I~~a~~~~dgiiINpga~THtSiAl~DAl~~~~~P~V 97 (146)
T PRK05395 25 STTLADIEALLEEEAAELGVE-LEFFQSNH------EGELIDRIHEARDGADGIIINPGAYTHTSVALRDALAAVSIPVI 97 (146)
T ss_pred CCCHHHHHHHHHHHHHHcCCE-EEEEeeCc------HHHHHHHHHhcccCCcEEEECchHHHHHHHHHHHHHHcCCCCEE
Confidence 467999999999999999975 67765442 3467777777643 45554455566777788888888665577
Q ss_pred ccccCcccc
Q 028264 177 QLEWSLWSR 185 (211)
Q Consensus 177 q~~~~~~~~ 185 (211)
.+..|-.+.
T Consensus 98 EVHiSNi~a 106 (146)
T PRK05395 98 EVHLSNIHA 106 (146)
T ss_pred EEecCCccc
Confidence 777665443
No 137
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=38.01 E-value=89 Score=24.32 Aligned_cols=66 Identities=14% Similarity=0.132 Sum_probs=40.1
Q ss_pred hHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCccEEecc-cccHHHHHHHhccCCeeEEccccC
Q 028264 114 KRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS-EACAATIRRAHAVHPITAVQLEWS 181 (211)
Q Consensus 114 ~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~iGvs-~~~~~~l~~~~~~~~~~~~q~~~~ 181 (211)
.++|++++-+.+-....+..+ .+....|.++... .+..+|+- |-+.+.+.++.....++.+|+.-+
T Consensus 16 ~~~Gvd~ig~i~~~~s~R~v~-~~~a~~l~~~~~~-~~~~V~v~vn~~~~~i~~ia~~~~~d~Vqlhg~ 82 (203)
T cd00405 16 AEAGADAIGFIFAPKSPRYVS-PEQAREIVAALPP-FVKRVGVFVNEDLEEILEIAEELGLDVVQLHGD 82 (203)
T ss_pred HHcCCCEEEEecCCCCCCCCC-HHHHHHHHHhCCC-CCcEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 467876655543332222222 3344444444433 36678875 677888888888888999998754
No 138
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=37.95 E-value=2.6e+02 Score=23.86 Aligned_cols=133 Identities=11% Similarity=0.115 Sum_probs=73.9
Q ss_pred ChHHHHHHHHHHHHcCCCeee----------CcCCcCCC--chHHHHHHHHhCCC-CCCeEEEeccCCcCCCCCCCCCCH
Q 028264 36 PEPDMIALIHHAINSGITLLD----------TSDIYGPY--TNEILVGKALKGGM-RERVELATKFGISFADGGKIRGDP 102 (211)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~D----------tA~~Yg~g--~~e~~lg~~l~~~~-R~~~~i~tK~~~~~~~~~~~~~~~ 102 (211)
+++...++.+.+.+.|+..|| +...||.. ...+.+.+.++... .-++-|+.|+...+.. ..+.
T Consensus 75 ~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~----~~t~ 150 (333)
T PRK11815 75 DPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDD----QDSY 150 (333)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCC----CcCH
Confidence 567777888888899999888 44556532 33444555555421 1135577776332210 1122
Q ss_pred HHHHHHHHHHhhHcCCCccceEeecCCCCC-CCH---------HHHHHHHHHHHHcC-CccEEeccc-ccHHHHHHHhcc
Q 028264 103 AYVRACCEASLKRLDIDCIDLYYQHRVDTK-IPI---------EVTIGELKKLVEEG-KIKYIGLSE-ACAATIRRAHAV 170 (211)
Q Consensus 103 ~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~-~~~---------~~~~~~l~~l~~~G-~i~~iGvs~-~~~~~l~~~~~~ 170 (211)
.. ...+-+.++..| +|.+.+|..... ... .--|+.+.++++.- .+--||... .+++.+.++++.
T Consensus 151 ~~-~~~~~~~l~~aG---~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~~ 226 (333)
T PRK11815 151 EF-LCDFVDTVAEAG---CDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQH 226 (333)
T ss_pred HH-HHHHHHHHHHhC---CCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHhc
Confidence 22 223444456667 577788854320 000 01267777777763 566666665 567778777764
Q ss_pred CCeeEEcc
Q 028264 171 HPITAVQL 178 (211)
Q Consensus 171 ~~~~~~q~ 178 (211)
.+.+++
T Consensus 227 --aDgVmI 232 (333)
T PRK11815 227 --VDGVMI 232 (333)
T ss_pred --CCEEEE
Confidence 444444
No 139
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=37.49 E-value=1.5e+02 Score=22.96 Aligned_cols=104 Identities=13% Similarity=0.072 Sum_probs=67.1
Q ss_pred HHHHHHHH--cCCCeeeCcCCcC-------CCchHHHHHHHHhCCCCCCeEEEeccCCcCCC-C-C--CCCCCHHHHHHH
Q 028264 42 ALIHHAIN--SGITLLDTSDIYG-------PYTNEILVGKALKGGMRERVELATKFGISFAD-G-G--KIRGDPAYVRAC 108 (211)
Q Consensus 42 ~~l~~A~~--~Gin~~DtA~~Yg-------~g~~e~~lg~~l~~~~R~~~~i~tK~~~~~~~-~-~--~~~~~~~~i~~~ 108 (211)
+..++|+. .++-++||-..-- .|+.+..+-..+.. .|-++.|.++--..|.+ | . ....++.....-
T Consensus 69 ~~~d~av~~a~~v~fiDTD~itT~~~~~~y~gr~~P~~~~~i~~-~r~DL~lLl~p~t~wvaDG~R~~~~~~~R~~F~~~ 147 (187)
T COG3172 69 AYEDAAVRYANKVAFIDTDFLTTQAFCKKYEGREHPFLQALIAE-YRFDLTLLLEPNTPWVADGLRSLGSSVQRQEFQNL 147 (187)
T ss_pred HHHHHHHhCCCceEEEeccHHHHHHHHHHHcccCCchHHHHHhh-cccceEEEcCCCCceeCCCccccccHhHHHHHHHH
Confidence 44555654 4899999865321 13344455566655 67778877775444432 2 1 122367778888
Q ss_pred HHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcC
Q 028264 109 CEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEG 149 (211)
Q Consensus 109 ~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G 149 (211)
+++.|++-+..| +.+..++.........++.+++...+
T Consensus 148 l~~~L~~~~~~~---v~i~~~~y~eR~~~~~~aV~ell~~~ 185 (187)
T COG3172 148 LEQMLEENNIPF---VVIEGEDYLERYLQAVEAVEELLGEK 185 (187)
T ss_pred HHHHHHHhCCcE---EEEcCCCHHHHHHHHHHHHHHHHhcc
Confidence 888888887665 55677776666778888888888765
No 140
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=37.23 E-value=2.1e+02 Score=22.78 Aligned_cols=139 Identities=12% Similarity=-0.007 Sum_probs=70.7
Q ss_pred HHHHcCCCeeeCcCCcCCCchHHHHHHHHhCCCCCCeEE--------------EeccCCcCCCCCCCCCCHHHHHHHHHH
Q 028264 46 HAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVEL--------------ATKFGISFADGGKIRGDPAYVRACCEA 111 (211)
Q Consensus 46 ~A~~~Gin~~DtA~~Yg~g~~e~~lg~~l~~~~R~~~~i--------------~tK~~~~~~~~~~~~~~~~~i~~~~~~ 111 (211)
.+++.|...+..+...- .+...+.+..+..+.+++.+ .++.|... ...+. ..+-+
T Consensus 88 ~~l~~G~~~v~ig~~~~--~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~-----~~~~~----~~~~~ 156 (243)
T cd04731 88 RLLRAGADKVSINSAAV--ENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKP-----TGLDA----VEWAK 156 (243)
T ss_pred HHHHcCCceEEECchhh--hChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCcee-----cCCCH----HHHHH
Confidence 33446888777665543 24455555555432233443 33333222 01111 12223
Q ss_pred HhhHcCCCccceEeecCCCCCCCHH-HHHHHHHHHHHcCCccEEeccc-ccHHHHHHHhccCCeeEEccccCccccC-ch
Q 028264 112 SLKRLDIDCIDLYYQHRVDTKIPIE-VTIGELKKLVEEGKIKYIGLSE-ACAATIRRAHAVHPITAVQLEWSLWSRD-VE 188 (211)
Q Consensus 112 sL~~Lg~~~lDl~~lh~~~~~~~~~-~~~~~l~~l~~~G~i~~iGvs~-~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~ 188 (211)
.++.+|. |.+.+|..+...... --|+.+.++++.-.+.-|.... .+++.+.++++....+.+++---+.... ..
T Consensus 157 ~l~~~G~---d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~~~~~ 233 (243)
T cd04731 157 EVEELGA---GEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFGEYTI 233 (243)
T ss_pred HHHHCCC---CEEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcCCCCH
Confidence 4456664 567777654321111 1355566666654555555554 4678898888875666666643333322 22
Q ss_pred hhHHHHHHhh
Q 028264 189 AEIVPTCSDC 198 (211)
Q Consensus 189 ~~l~~~~~~~ 198 (211)
.++...|++|
T Consensus 234 ~~~~~~~~~~ 243 (243)
T cd04731 234 AELKEYLAER 243 (243)
T ss_pred HHHHHHHhhC
Confidence 3667777664
No 141
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=37.10 E-value=2.3e+02 Score=23.01 Aligned_cols=75 Identities=19% Similarity=0.166 Sum_probs=49.0
Q ss_pred ChHHHHHHHHHHHHcCCCeeeCcCCcCCC-chHHHHHHHHhCCCCCCeEEEeccCCcCCCCCCCCCCHHHHHHHHHHHhh
Q 028264 36 PEPDMIALIHHAINSGITLLDTSDIYGPY-TNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLK 114 (211)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g-~~e~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~ 114 (211)
.+++..++.+.++++|..|+=|+..+..+ -+.+.+ +.+++.-..+ +--|..-.. .+.++...-++....
T Consensus 138 t~ee~~~A~~i~~~aGAdFVKTSTGf~~~gAT~edv-~lM~~~vg~~--vgvKaSGGI-------rt~eda~~~i~aga~ 207 (228)
T COG0274 138 TDEEKRKACEIAIEAGADFVKTSTGFSAGGATVEDV-KLMKETVGGR--VGVKASGGI-------RTAEDAKAMIEAGAT 207 (228)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHH-HHHHHHhccC--ceeeccCCc-------CCHHHHHHHHHHhHH
Confidence 55777999999999999999999966544 333322 3333311111 223332222 478888888998889
Q ss_pred HcCCCc
Q 028264 115 RLDIDC 120 (211)
Q Consensus 115 ~Lg~~~ 120 (211)
|+|++.
T Consensus 208 RiGtSs 213 (228)
T COG0274 208 RIGTSS 213 (228)
T ss_pred Hhcccc
Confidence 998764
No 142
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=36.58 E-value=2.8e+02 Score=23.94 Aligned_cols=26 Identities=4% Similarity=0.110 Sum_probs=21.7
Q ss_pred CCChHHHHHHHHHHHHcCCCeeeCcC
Q 028264 34 PEPEPDMIALIHHAINSGITLLDTSD 59 (211)
Q Consensus 34 ~~~~~~~~~~l~~A~~~Gin~~DtA~ 59 (211)
..+.++..++.+...+.|+..++...
T Consensus 18 ~~s~~~k~~ia~~L~~~Gv~~IEvG~ 43 (363)
T TIGR02090 18 SLTVEQKVEIARKLDELGVDVIEAGF 43 (363)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 34678888999998999999999764
No 143
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=36.42 E-value=2.3e+02 Score=25.29 Aligned_cols=133 Identities=13% Similarity=0.130 Sum_probs=69.8
Q ss_pred CChHHHHHHHHHHHHcCCCee---e-CcCCcCCCchHHHHHHHHhC---CC-CCCeEEEeccCCcCCCCCCCCCCHHHHH
Q 028264 35 EPEPDMIALIHHAINSGITLL---D-TSDIYGPYTNEILVGKALKG---GM-RERVELATKFGISFADGGKIRGDPAYVR 106 (211)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gin~~---D-tA~~Yg~g~~e~~lg~~l~~---~~-R~~~~i~tK~~~~~~~~~~~~~~~~~i~ 106 (211)
.+.++..+-++...+.|++.| | +-..||.+ .+ -+-+.++. .+ -..+.++ ... +..+.
T Consensus 183 r~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~~~-~~-~l~~Ll~~l~~~~~~~~ir~~----~~~---------p~~~~ 247 (449)
T PRK14332 183 RDPKSIVREIQDLQEKGIRQVTLLGQNVNSYKEQ-ST-DFAGLIQMLLDETTIERIRFT----SPH---------PKDFP 247 (449)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEEecccCCcccCC-cc-cHHHHHHHHhcCCCcceEEEE----CCC---------cccCC
Confidence 366777788888889998877 2 44467643 11 13333332 11 1112222 111 12223
Q ss_pred HHHHHHhhHcC--CCccceEeecC-------CCCCCCHHHHHHHHHHHHHcC--C-cc---EEecccccHHHHHHHhcc-
Q 028264 107 ACCEASLKRLD--IDCIDLYYQHR-------VDTKIPIEVTIGELKKLVEEG--K-IK---YIGLSEACAATIRRAHAV- 170 (211)
Q Consensus 107 ~~~~~sL~~Lg--~~~lDl~~lh~-------~~~~~~~~~~~~~l~~l~~~G--~-i~---~iGvs~~~~~~l~~~~~~- 170 (211)
+.+-+.+++.+ ..++++=+=|. .......++..++++.+++.+ . ++ =+|+.+.+.+.+++.++.
T Consensus 248 ~ell~~m~~~~~~~~~l~lgvQSgsd~vLk~m~R~~t~~~~~~~i~~lr~~~p~i~i~td~IvGfPgET~edf~~tl~~v 327 (449)
T PRK14332 248 DHLLSLMAKNPRFCPNIHLPLQAGNTRVLEEMKRSYSKEEFLDVVKEIRNIVPDVGITTDIIVGFPNETEEEFEDTLAVV 327 (449)
T ss_pred HHHHHHHHhCCCccceEEECCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEeeCCCCCHHHHHHHHHHH
Confidence 33444444444 44554433222 233445678889999998862 2 11 157878888777666554
Q ss_pred --CCeeEE-ccccCc
Q 028264 171 --HPITAV-QLEWSL 182 (211)
Q Consensus 171 --~~~~~~-q~~~~~ 182 (211)
.+|+.+ -+.|++
T Consensus 328 ~~l~~~~~~~f~ys~ 342 (449)
T PRK14332 328 REVQFDMAFMFKYSE 342 (449)
T ss_pred HhCCCCEEEEEEecC
Confidence 555443 335554
No 144
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=36.37 E-value=3e+02 Score=24.20 Aligned_cols=47 Identities=9% Similarity=0.116 Sum_probs=31.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCC-cc-----EEecccccHHHHHHHhcc---CCeeEE
Q 028264 130 DTKIPIEVTIGELKKLVEEGK-IK-----YIGLSEACAATIRRAHAV---HPITAV 176 (211)
Q Consensus 130 ~~~~~~~~~~~~l~~l~~~G~-i~-----~iGvs~~~~~~l~~~~~~---~~~~~~ 176 (211)
....+.++..++++.+++.|. +. =+|+-+.+.+.+++.++. .+|+.+
T Consensus 268 ~R~~~~~~~~~~i~~lr~~~~~i~i~~~~IvG~PgET~ed~~~tl~~i~~~~~~~~ 323 (429)
T TIGR00089 268 NRKYTREEYLDIVEKIRAKIPDAAITTDIIVGFPGETEEDFEETLDLVEEVKFDKL 323 (429)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEeeEEEECCCCCHHHHHHHHHHHHhcCCCEe
Confidence 344567888999999999872 21 267778888777766654 444433
No 145
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=36.31 E-value=2.7e+02 Score=23.60 Aligned_cols=120 Identities=12% Similarity=-0.013 Sum_probs=61.4
Q ss_pred CChHHHHHHHHHHHHcCCCeeeCcCCcCCCchHHHHHHHHhCCCCCCeEEEeccCCcCCCCCCCCCCHHHHH--------
Q 028264 35 EPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVR-------- 106 (211)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~~e~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~-------- 106 (211)
.+.++..+.++.+.+.|++.|-.............+-+.++.+.+...-+ ++. ..++..+.
T Consensus 72 ls~eei~~~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~li~~Ik~~~~~i--~~~---------~~s~~ei~~~~~~~g~ 140 (340)
T TIGR03699 72 LSVEEILQKIEELVAYGGTQILLQGGVNPDLGLDYYEDLFRAIKARFPHI--HIH---------SFSPVEIVYIAKKEGL 140 (340)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCc--CCC---------CCCHHHHHHHhccCCC
Confidence 57788889999999999988776432221112222323333211111001 110 02222221
Q ss_pred --HHHHHHhhHcCCCccceE--e-e-----cCC-CCCCCHHHHHHHHHHHHHcCCccE----EecccccHHHHHH
Q 028264 107 --ACCEASLKRLDIDCIDLY--Y-Q-----HRV-DTKIPIEVTIGELKKLVEEGKIKY----IGLSEACAATIRR 166 (211)
Q Consensus 107 --~~~~~sL~~Lg~~~lDl~--~-l-----h~~-~~~~~~~~~~~~l~~l~~~G~i~~----iGvs~~~~~~l~~ 166 (211)
+..-+.|+..|+++++.. . + +.. ....+.++.+++++.+++.|.--. +|. ..+.+++.+
T Consensus 141 ~~~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiGl-gEt~ed~~~ 214 (340)
T TIGR03699 141 SLREVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMFGH-VETLEDRIE 214 (340)
T ss_pred CHHHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEeeC-CCCHHHHHH
Confidence 344455677788776521 0 1 111 112357788999999999985433 444 455544333
No 146
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=36.07 E-value=1.3e+02 Score=22.51 Aligned_cols=80 Identities=14% Similarity=0.171 Sum_probs=56.1
Q ss_pred CCCHHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHH--cCCccEEecccccHHHHHHHhccCCeeEE
Q 028264 99 RGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVE--EGKIKYIGLSEACAATIRRAHAVHPITAV 176 (211)
Q Consensus 99 ~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~--~G~i~~iGvs~~~~~~l~~~~~~~~~~~~ 176 (211)
..+.+++.+.+++..+.+|++ ++++|-.. -.++.+.+.+..+ +|.|-.=|--++++-.++.++.....-++
T Consensus 23 ~~tl~di~~~~~~~a~~~g~~-v~~~QSN~------EGelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~~~~P~v 95 (141)
T TIGR01088 23 SQTLEEIVEIIETFAAQLNVE-LEFFQSNS------EGQLIDKIHEAEGQYDGIIINPGALTHTSVALRDALAAVSLPVV 95 (141)
T ss_pred CCCHHHHHHHHHHHHHHcCCE-EEEEeeCc------HHHHHHHHHhccccCCEEEEcChHHhhhHHHHHHHHHcCCCCEE
Confidence 457999999999999999975 66665432 3467777776643 45555556667777788888887665577
Q ss_pred ccccCcccc
Q 028264 177 QLEWSLWSR 185 (211)
Q Consensus 177 q~~~~~~~~ 185 (211)
.+..|-.+.
T Consensus 96 EVHiSNi~a 104 (141)
T TIGR01088 96 EVHLSNVHA 104 (141)
T ss_pred EEEcCCccc
Confidence 776665443
No 147
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=34.69 E-value=2.2e+02 Score=22.18 Aligned_cols=134 Identities=17% Similarity=0.168 Sum_probs=81.5
Q ss_pred CChHHHHHHHHHHHHcCCCeeeCcCCcCCCchHHHHHHHHhCCCCCCeEEEeccCCcCCCCCCCCCCHHHHHHHHHHHhh
Q 028264 35 EPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLK 114 (211)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~~e~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~ 114 (211)
...++..++++.|.+.|+.-+-+.+.+- +. ..+.+++ ..+.+.+=.+.... ..+.+.....++++++
T Consensus 14 ~t~~~i~~~~~~a~~~~~~av~v~p~~v----~~-~~~~l~~---~~~~v~~~~~fp~g-----~~~~~~k~~eve~A~~ 80 (203)
T cd00959 14 ATEEDIRKLCDEAKEYGFAAVCVNPCFV----PL-AREALKG---SGVKVCTVIGFPLG-----ATTTEVKVAEAREAIA 80 (203)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcHHHH----HH-HHHHcCC---CCcEEEEEEecCCC-----CCcHHHHHHHHHHHHH
Confidence 4678899999999998887776665332 22 3334432 34555555543331 2345666666888776
Q ss_pred HcCCCccceEeecCCCCCCCHHHHHHHHHHHHHc--CCccE--EecccccHHHHHHHhcc---CCeeEEccc--cCc
Q 028264 115 RLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEE--GKIKY--IGLSEACAATIRRAHAV---HPITAVQLE--WSL 182 (211)
Q Consensus 115 ~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~--G~i~~--iGvs~~~~~~l~~~~~~---~~~~~~q~~--~~~ 182 (211)
+|.|-+|++.--..-...+.++.++.+.++++. |..-- +...-.+.+++.++.+. ...+++... |.+
T Consensus 81 -~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~IKTsTG~~~ 156 (203)
T cd00959 81 -DGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIEAGADFIKTSTGFGP 156 (203)
T ss_pred -cCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEcCCCCCC
Confidence 699999987654432234456677777777775 43221 23333456666666554 567888887 654
No 148
>cd08557 PI-PLCc_bacteria_like Catalytic domain of bacterial phosphatidylinositol-specific phospholipase C and similar proteins. This subfamily corresponds to the catalytic domain present in bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) and their sequence homologs found in eukaryota. Bacterial PI-PLCs participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). Although their precise physiological function remains unclear, bacterial PI-PLCs may function as virulence factors in some pathogenic bacteria. Bacterial PI-PLCs contain a single TIM-barrel type catalytic domain. Its catalytic mechanism is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. Eukaryotic homologs in this family are named as phosphatidylinositol-specific phospholipase C X
Probab=34.66 E-value=1.1e+02 Score=24.71 Aligned_cols=20 Identities=25% Similarity=0.481 Sum_probs=15.3
Q ss_pred HHHHHHHcCCCeeeCcCCcC
Q 028264 43 LIHHAINSGITLLDTSDIYG 62 (211)
Q Consensus 43 ~l~~A~~~Gin~~DtA~~Yg 62 (211)
-+...++.|||+||---.+.
T Consensus 42 ~i~~QL~~GiR~~dlr~~~~ 61 (271)
T cd08557 42 SITDQLDAGVRYLDLRVAYD 61 (271)
T ss_pred CHHHHHhcCceEEEEEeeee
Confidence 47788999999999655443
No 149
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=34.50 E-value=3.1e+02 Score=23.89 Aligned_cols=123 Identities=14% Similarity=0.061 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHcCCCeeeCcCCcCC--CchHHHHHHHHhCCCCCCeEEEeccCCcCCCCCCCCCCHHHHHHHHHHHhhH
Q 028264 38 PDMIALIHHAINSGITLLDTSDIYGP--YTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKR 115 (211)
Q Consensus 38 ~~~~~~l~~A~~~Gin~~DtA~~Yg~--g~~e~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~ 115 (211)
++..++++.|++.|+.-|=+...|.. ..++..+-+.++...+-+..+.+..-... ..-...+.+.++.+ +.
T Consensus 167 ~~~~~l~~~al~~Ga~g~~~~~~y~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~------~~e~~av~~~~~~a-~~ 239 (415)
T cd01297 167 AKMRELLREALEAGALGISTGLAYAPRLYAGTAELVALARVAARYGGVYQTHVRYEG------DSILEALDELLRLG-RE 239 (415)
T ss_pred HHHHHHHHHHHHCCCeEEEcccccCCcccCCHHHHHHHHHHHHHcCCEEEEEECccc------ccHHHHHHHHHHHH-HH
Confidence 34466788889999877755555543 35667777777553344556666653211 01233344444333 33
Q ss_pred cCCCccceEeecCCCCC----CCHHHHHHHHHHHHHcCCccEEeccccc---HHHHHHHhcc
Q 028264 116 LDIDCIDLYYQHRVDTK----IPIEVTIGELKKLVEEGKIKYIGLSEAC---AATIRRAHAV 170 (211)
Q Consensus 116 Lg~~~lDl~~lh~~~~~----~~~~~~~~~l~~l~~~G~i~~iGvs~~~---~~~l~~~~~~ 170 (211)
.|. + +.+.|..... ....++.+.+++.+++|.--...++.+. ...+.++++.
T Consensus 240 ~g~-r--~~i~H~ss~~~~~~~~~~~~l~~i~~a~~~G~~v~~e~~p~~~~~~~~~~~l~~~ 298 (415)
T cd01297 240 TGR-P--VHISHLKSAGAPNWGKIDRLLALIEAARAEGLQVTADVYPYGAGSEDDVRRIMAH 298 (415)
T ss_pred hCC-C--EEEEEEecCCCcccchHHHHHHHHHHHHHhCCcEEEEeCCCCCCcHHHHHHHHcC
Confidence 453 3 4445543222 3456778888888888854344444432 4456666655
No 150
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=34.40 E-value=2e+02 Score=23.34 Aligned_cols=49 Identities=12% Similarity=0.083 Sum_probs=37.7
Q ss_pred ccceEeecCCCCCCCH---HHHHHHHHHHHHcCCccEEecccccHHHHHHHhcc
Q 028264 120 CIDLYYQHRVDTKIPI---EVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV 170 (211)
Q Consensus 120 ~lDl~~lh~~~~~~~~---~~~~~~l~~l~~~G~i~~iGvs~~~~~~l~~~~~~ 170 (211)
.++++.+..|-...++ ....+.+.+++.+|++ +=+|+|..++++++.+.
T Consensus 151 ~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~--viFSSH~m~EvealCDr 202 (245)
T COG4555 151 DPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRA--VIFSSHIMQEVEALCDR 202 (245)
T ss_pred CCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcE--EEEecccHHHHHHhhhe
Confidence 3566666666544443 4678888999999985 88999999999999776
No 151
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=34.36 E-value=1.9e+02 Score=23.39 Aligned_cols=102 Identities=23% Similarity=0.194 Sum_probs=55.3
Q ss_pred ChHHHHHHHHHHHHcCCCeeeCcCCcCCCchHHHHHHHHhC--C-------CCCCeEEEeccCCc----------CCCCC
Q 028264 36 PEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKG--G-------MRERVELATKFGIS----------FADGG 96 (211)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~~e~~lg~~l~~--~-------~R~~~~i~tK~~~~----------~~~~~ 96 (211)
+.+...+++++|-..|-.|+|.|. ..+++..+... . ..+.++-+.|.|.. +. .
T Consensus 25 d~~~V~~i~~AA~~ggAt~vDIAa------dp~LV~~~~~~s~lPICVSaVep~~f~~aV~AGAdliEIGNfDsFY~--q 96 (242)
T PF04481_consen 25 DAESVAAIVKAAEIGGATFVDIAA------DPELVKLAKSLSNLPICVSAVEPELFVAAVKAGADLIEIGNFDSFYA--Q 96 (242)
T ss_pred CHHHHHHHHHHHHccCCceEEecC------CHHHHHHHHHhCCCCeEeecCCHHHHHHHHHhCCCEEEecchHHHHh--c
Confidence 678889999999999999999996 33334332211 1 12222222222211 11 1
Q ss_pred CCCCCHHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcC
Q 028264 97 KIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEG 149 (211)
Q Consensus 97 ~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G 149 (211)
...++.+++.+-.++..+.|- |..+---..+.-+.++..+--++|++.|
T Consensus 97 Gr~f~a~eVL~Lt~~tR~LLP----~~~LsVTVPHiL~ld~Qv~LA~~L~~~G 145 (242)
T PF04481_consen 97 GRRFSAEEVLALTRETRSLLP----DITLSVTVPHILPLDQQVQLAEDLVKAG 145 (242)
T ss_pred CCeecHHHHHHHHHHHHHhCC----CCceEEecCccccHHHHHHHHHHHHHhC
Confidence 133567777777777777763 2222222333445666666666666544
No 152
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=34.33 E-value=2.4e+02 Score=22.46 Aligned_cols=136 Identities=18% Similarity=0.204 Sum_probs=82.6
Q ss_pred CCCChHHHHHHHHHHHHcCCCeeeCcCCcCCCchHHHHHHHHhCCCCCCeEEEeccCCcCCCCCCCCCCHHHHHHHHHHH
Q 028264 33 PPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEAS 112 (211)
Q Consensus 33 ~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~~e~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~s 112 (211)
+....++..++.+.|.+.|+.-+-..+.|- ....+.|+ ..++-++|=+++... ..+.+.-...+++.
T Consensus 13 p~~t~~~i~~lc~~A~~~~~~avcv~p~~v-----~~a~~~l~---~~~v~v~tVigFP~G-----~~~~~~K~~E~~~A 79 (211)
T TIGR00126 13 ADTTEEDIITLCAQAKTYKFAAVCVNPSYV-----PLAKELLK---GTEVRICTVVGFPLG-----ASTTDVKLYETKEA 79 (211)
T ss_pred CCCCHHHHHHHHHHHHhhCCcEEEeCHHHH-----HHHHHHcC---CCCCeEEEEeCCCCC-----CCcHHHHHHHHHHH
Confidence 345778899999999999998887766543 23344453 346777777765441 12333333334444
Q ss_pred hhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHc--CCc-cEE-ecccccHHHHHHHhcc---CCeeEEccc--cCc
Q 028264 113 LKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEE--GKI-KYI-GLSEACAATIRRAHAV---HPITAVQLE--WSL 182 (211)
Q Consensus 113 L~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~--G~i-~~i-Gvs~~~~~~l~~~~~~---~~~~~~q~~--~~~ 182 (211)
+ ++|.+-+|+++--..-...+.+...+.+.++++. |.. +-| -.+-.+.+++.++.+. ...++++.. |.+
T Consensus 80 v-~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~ia~eaGADfvKTsTGf~~ 157 (211)
T TIGR00126 80 I-KYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEICIDAGADFVKTSTGFGA 157 (211)
T ss_pred H-HcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCC
Confidence 4 4699999998765432334566777777777764 432 221 1222344566655544 567888887 664
No 153
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=34.28 E-value=1.6e+02 Score=21.99 Aligned_cols=31 Identities=10% Similarity=0.058 Sum_probs=20.0
Q ss_pred CeEEEeccCCcCCCCCCCCCCHHHHHHHHHHHhhHcCC
Q 028264 81 RVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDI 118 (211)
Q Consensus 81 ~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~ 118 (211)
++++..|-+... .+.+.+.+++...|++++.
T Consensus 87 DiVviar~~~~~-------~~~~~l~~~l~~LL~k~~~ 117 (145)
T PRK04820 87 DYVVVARSAAAK-------ASNPQLRDAFLRLLRRAGA 117 (145)
T ss_pred CEEEEEeCCccc-------CCHHHHHHHHHHHHHHhCc
Confidence 566666655333 5677777777777777654
No 154
>PRK05406 LamB/YcsF family protein; Provisional
Probab=34.18 E-value=1.8e+02 Score=23.90 Aligned_cols=79 Identities=15% Similarity=0.255 Sum_probs=49.7
Q ss_pred eecccccCCcCCCCCChHHHHHHHHHHH-HcCCCeeeCcCCcCCCchHHHHHHHHhCCCCCCeEEEeccCCcCCCC---C
Q 028264 21 GLGCMAMSCLYGPPEPEPDMIALIHHAI-NSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADG---G 96 (211)
Q Consensus 21 glG~~~~~~~~~~~~~~~~~~~~l~~A~-~~Gin~~DtA~~Yg~g~~e~~lg~~l~~~~R~~~~i~tK~~~~~~~~---~ 96 (211)
+||.|.+| ++++...++..|- .+|. +.| ....+-+.++--....+-|...-++....| .
T Consensus 13 ~fG~w~~g-------~D~~lmp~IssANIACG~-------HAG---Dp~~M~~tv~lA~~~gV~IGAHPgypD~~gFGRR 75 (246)
T PRK05406 13 SFGAWKMG-------DDEALLPLVTSANIACGF-------HAG---DPAVMRRTVRLAKENGVAIGAHPGYPDLEGFGRR 75 (246)
T ss_pred CCCCCCCC-------CHHHHHHHhhhHHHhccc-------cCC---CHHHHHHHHHHHHHcCCeEccCCCCCccCCCCCC
Confidence 67888874 4466777777774 4443 445 445555666543455666666655443333 4
Q ss_pred CCCCCHHHHHHHHHHHhhHc
Q 028264 97 KIRGDPAYVRACCEASLKRL 116 (211)
Q Consensus 97 ~~~~~~~~i~~~~~~sL~~L 116 (211)
....++++++..+...+..|
T Consensus 76 ~m~~s~~el~~~v~yQigAL 95 (246)
T PRK05406 76 NMDLSPEELYALVLYQIGAL 95 (246)
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 55689999998877766666
No 155
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=34.11 E-value=3e+02 Score=23.54 Aligned_cols=98 Identities=13% Similarity=-0.005 Sum_probs=55.1
Q ss_pred CCCeEEEeccCCcCCCCCCCCCCHHHHHHHHHHHhhHcCCCccceE-eecC-CCCC----CCHHHHHHHHHHHHHcCCcc
Q 028264 79 RERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLY-YQHR-VDTK----IPIEVTIGELKKLVEEGKIK 152 (211)
Q Consensus 79 R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~-~lh~-~~~~----~~~~~~~~~l~~l~~~G~i~ 152 (211)
.+++.|..|++.... .....+.+... .+-+.|+..|+|++++- -.|. +-.. .+.........++++.=.+-
T Consensus 202 G~d~~v~iRi~~~D~--~~~g~~~~e~~-~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~iP 278 (353)
T cd02930 202 GEDFIIIYRLSMLDL--VEGGSTWEEVV-ALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDIP 278 (353)
T ss_pred CCCceEEEEeccccc--CCCCCCHHHHH-HHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCCC
Confidence 457888888875321 01123455443 34455788898887762 1232 1111 11111234455666655555
Q ss_pred EEeccc-ccHHHHHHHhccCCeeEEccc
Q 028264 153 YIGLSE-ACAATIRRAHAVHPITAVQLE 179 (211)
Q Consensus 153 ~iGvs~-~~~~~l~~~~~~~~~~~~q~~ 179 (211)
=++... ++++.++++++....+.+++-
T Consensus 279 Vi~~G~i~~~~~a~~~i~~g~~D~V~~g 306 (353)
T cd02930 279 VIASNRINTPEVAERLLADGDADMVSMA 306 (353)
T ss_pred EEEcCCCCCHHHHHHHHHCCCCChhHhh
Confidence 566555 578889999988777777773
No 156
>PLN02775 Probable dihydrodipicolinate reductase
Probab=34.08 E-value=2.8e+02 Score=23.27 Aligned_cols=70 Identities=9% Similarity=0.014 Sum_probs=49.1
Q ss_pred HHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCccEEecccccHHHHHHHhcc-CCeeEEccccCc
Q 028264 109 CEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV-HPITAVQLEWSL 182 (211)
Q Consensus 109 ~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~iGvs~~~~~~l~~~~~~-~~~~~~q~~~~~ 182 (211)
++..|..+..++.|++.+.. +.++-+.+.++.+.+.|+--=+|.+.|+.++++++.+. .-+.+.--+||+
T Consensus 68 l~~~l~~~~~~~~~~VvIDF----T~P~a~~~~~~~~~~~g~~~VvGTTG~~~e~l~~~~~~~~i~vv~apNfSi 138 (286)
T PLN02775 68 REAVLSSVKAEYPNLIVVDY----TLPDAVNDNAELYCKNGLPFVMGTTGGDRDRLLKDVEESGVYAVIAPQMGK 138 (286)
T ss_pred HHHHHHHhhccCCCEEEEEC----CChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhcCCccEEEECcccH
Confidence 34444444345788777775 34567888899999999988899999999988887765 234444445554
No 157
>PLN02428 lipoic acid synthase
Probab=34.01 E-value=3.1e+02 Score=23.72 Aligned_cols=118 Identities=12% Similarity=0.181 Sum_probs=61.0
Q ss_pred CChHHHHHHHHHHHHcCCCeeeCcCC----cCCCchHHHHHHHHhCCCC--CCeEEEeccCCcCCCCCCCCCCHHHHHHH
Q 028264 35 EPEPDMIALIHHAINSGITLLDTSDI----YGPYTNEILVGKALKGGMR--ERVELATKFGISFADGGKIRGDPAYVRAC 108 (211)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gin~~DtA~~----Yg~g~~e~~lg~~l~~~~R--~~~~i~tK~~~~~~~~~~~~~~~~~i~~~ 108 (211)
.+.++..++.+.+.+.|++++=.... |.++..+. +.+.++.+.+ ..+.|..- .+.. ..+ +.
T Consensus 130 ~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~ga~~-~~elir~Ir~~~P~i~Ie~L-~pdf------~~d-----~e 196 (349)
T PLN02428 130 PDPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGGSGH-FAETVRRLKQLKPEILVEAL-VPDF------RGD-----LG 196 (349)
T ss_pred CChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCcccHHH-HHHHHHHHHHhCCCcEEEEe-Cccc------cCC-----HH
Confidence 35566777888888899987654322 33333443 3344444221 13333331 1111 011 12
Q ss_pred HHHHhhHcCCCccceEeecCCCC-----------CCCHHHHHHHHHHHHHc--CCccE----EecccccHHHHHHHhcc
Q 028264 109 CEASLKRLDIDCIDLYYQHRVDT-----------KIPIEVTIGELKKLVEE--GKIKY----IGLSEACAATIRRAHAV 170 (211)
Q Consensus 109 ~~~sL~~Lg~~~lDl~~lh~~~~-----------~~~~~~~~~~l~~l~~~--G~i~~----iGvs~~~~~~l~~~~~~ 170 (211)
+-..|+.-| +|.+. |+++. ..+.++.++.++.+++. |..-. +|+ .-+.+++.+.++.
T Consensus 197 lL~~L~eAG---~d~i~-hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGL-GET~Edv~e~l~~ 270 (349)
T PLN02428 197 AVETVATSG---LDVFA-HNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGL-GETDEEVVQTMED 270 (349)
T ss_pred HHHHHHHcC---CCEEc-cCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEec-CCCHHHHHHHHHH
Confidence 222233344 55533 55643 23467889999999987 76532 667 4556655555443
No 158
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=33.92 E-value=2e+02 Score=21.55 Aligned_cols=90 Identities=16% Similarity=0.069 Sum_probs=63.8
Q ss_pred CCHHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCc-cEEecccccHHHHHHHhccCCeeEEcc
Q 028264 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKI-KYIGLSEACAATIRRAHAVHPITAVQL 178 (211)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i-~~iGvs~~~~~~l~~~~~~~~~~~~q~ 178 (211)
...-.+++.+.+-|+..|-+.+|+-. +..+...++.+.-..+.+.+.+|.. +.|-+|......-..+-+...+.+.+.
T Consensus 9 haG~~lK~~l~~~L~~~g~eV~D~G~-~~~~~~~dYpd~a~~va~~V~~g~~~~GIliCGtGiG~siaANK~~GIRAA~~ 87 (148)
T PRK05571 9 HAGFELKEEIIEHLEELGHEVIDLGP-DSYDASVDYPDYAKKVAEAVVAGEADRGILICGTGIGMSIAANKVKGIRAALC 87 (148)
T ss_pred CchHHHHHHHHHHHHHCCCEEEEcCC-CCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCCcHHHHHHHhcCCCeEEEEE
Confidence 45677999999999999988888743 2223246788888889999999987 889999988876666666655554332
Q ss_pred ccCccccCchhhHHHHHHhh
Q 028264 179 EWSLWSRDVEAEIVPTCSDC 198 (211)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~~~ 198 (211)
.+ +.-...+++|
T Consensus 88 ------~d--~~~A~~ar~h 99 (148)
T PRK05571 88 ------HD--TYSAHLAREH 99 (148)
T ss_pred ------CC--HHHHHHHHHh
Confidence 12 2445566665
No 159
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=33.65 E-value=3.1e+02 Score=23.60 Aligned_cols=64 Identities=16% Similarity=0.060 Sum_probs=39.8
Q ss_pred HHHHHHhhHcCCCccceEeecC-------CCCCCCHHHHHHHHHHHHHcCC--ccE---EecccccHHHHHHHhcc
Q 028264 107 ACCEASLKRLDIDCIDLYYQHR-------VDTKIPIEVTIGELKKLVEEGK--IKY---IGLSEACAATIRRAHAV 170 (211)
Q Consensus 107 ~~~~~sL~~Lg~~~lDl~~lh~-------~~~~~~~~~~~~~l~~l~~~G~--i~~---iGvs~~~~~~l~~~~~~ 170 (211)
...-+.|++.|++++.+-+=.. .....+.+++.++++.+++.|. +.. +|+.+.+.+.+.+.++.
T Consensus 100 ~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~~~~~~~~~~i~~l~~~g~~~v~~dli~GlPgqt~~~~~~~l~~ 175 (377)
T PRK08599 100 KEKLQVLKDSGVNRISLGVQTFNDELLKKIGRTHNEEDVYEAIANAKKAGFDNISIDLIYALPGQTIEDFKESLAK 175 (377)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEeeecCCCCCCHHHHHHHHHH
Confidence 3444556666776655433222 2334567899999999999984 222 46777777776665544
No 160
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=33.53 E-value=1.2e+02 Score=20.21 Aligned_cols=60 Identities=10% Similarity=-0.059 Sum_probs=36.1
Q ss_pred hHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcC-CccEEeccc-ccHHHHHHHhccCCeeEE
Q 028264 114 KRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEG-KIKYIGLSE-ACAATIRRAHAVHPITAV 176 (211)
Q Consensus 114 ~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G-~i~~iGvs~-~~~~~l~~~~~~~~~~~~ 176 (211)
+.+....+|++++...-+..+..++++ ++++.+ .++-|-+++ .+.+...++++..-.+++
T Consensus 37 ~~~~~~~~d~iiid~~~~~~~~~~~~~---~i~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l 98 (112)
T PF00072_consen 37 ELLKKHPPDLIIIDLELPDGDGLELLE---QIRQINPSIPIIVVTDEDDSDEVQEALRAGADDYL 98 (112)
T ss_dssp HHHHHSTESEEEEESSSSSSBHHHHHH---HHHHHTTTSEEEEEESSTSHHHHHHHHHTTESEEE
T ss_pred HHhcccCceEEEEEeeecccccccccc---ccccccccccEEEecCCCCHHHHHHHHHCCCCEEE
Confidence 333334489999987655554444444 555544 777788876 445667777766433443
No 161
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=33.46 E-value=2.8e+02 Score=23.01 Aligned_cols=68 Identities=25% Similarity=0.197 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHcCCC----eeeCcCCcCCCchHHHHHHHHhC---CCCCCeEEEeccCCcCCCCCCCCCCHHHHHHHHH
Q 028264 38 PDMIALIHHAINSGIT----LLDTSDIYGPYTNEILVGKALKG---GMRERVELATKFGISFADGGKIRGDPAYVRACCE 110 (211)
Q Consensus 38 ~~~~~~l~~A~~~Gin----~~DtA~~Yg~g~~e~~lg~~l~~---~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~ 110 (211)
++..++++.|-+.|+. .-|.+..|. .+...+-+..+. ..-+.+.|.--.|. .+|..+.+-++
T Consensus 115 ~~~~~~i~~a~~~G~~v~~~~~d~~~~~r--~~~~~~~~~~~~~~~~G~~~i~l~DT~G~---------~~P~~v~~l~~ 183 (280)
T cd07945 115 ADIREVIEYAIKNGIEVNIYLEDWSNGMR--DSPDYVFQLVDFLSDLPIKRIMLPDTLGI---------LSPFETYTYIS 183 (280)
T ss_pred HHHHHHHHHHHhCCCEEEEEEEeCCCCCc--CCHHHHHHHHHHHHHcCCCEEEecCCCCC---------CCHHHHHHHHH
Confidence 3345666666666753 222222222 233444443333 23444555544443 34666666666
Q ss_pred HHhhHc
Q 028264 111 ASLKRL 116 (211)
Q Consensus 111 ~sL~~L 116 (211)
...+++
T Consensus 184 ~l~~~~ 189 (280)
T cd07945 184 DMVKRY 189 (280)
T ss_pred HHHhhC
Confidence 666555
No 162
>cd08620 PI-PLCXDc_like_1 Catalytic domain of uncharacterized hypothetical proteins similar to eukaryotic phosphatidylinositol-specific phospholipase C, X domain containing proteins. This subfamily corresponds to the catalytic domain present in a group of uncharacterized hypothetical proteins found in bacteria and fungi, which are similar to eukaryotic phosphatidylinositol-specific phospholipase C, X domain containing proteins (PI-PLCXD). The typical eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) has a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. The catalytic core domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. In contrast, eukaryotic PI-PLCXDs contain a single TIM-barrel type catalytic domain, X domain, and are more closely related to bacterial PI-PLCs, which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidyl
Probab=33.25 E-value=2.1e+02 Score=23.88 Aligned_cols=18 Identities=17% Similarity=0.285 Sum_probs=13.5
Q ss_pred HHHHHHcCCCeeeCcCCc
Q 028264 44 IHHAINSGITLLDTSDIY 61 (211)
Q Consensus 44 l~~A~~~Gin~~DtA~~Y 61 (211)
+..-++.||||||--..|
T Consensus 36 i~~QL~~GiRyfDlRv~~ 53 (281)
T cd08620 36 VSTQLALGARYFDFRPGY 53 (281)
T ss_pred HHHHHhcCcEEEEEEeee
Confidence 666788999999874433
No 163
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=33.23 E-value=1.4e+02 Score=22.92 Aligned_cols=101 Identities=19% Similarity=0.163 Sum_probs=59.8
Q ss_pred ChHHHHHHHHHHHHcCCCeeeCcCC-cCCCchHHHHHHHHhCCCCCCeEEEeccCCcCCCC--CCCCCCHHHHHHHHHHH
Q 028264 36 PEPDMIALIHHAINSGITLLDTSDI-YGPYTNEILVGKALKGGMRERVELATKFGISFADG--GKIRGDPAYVRACCEAS 112 (211)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~DtA~~-Yg~g~~e~~lg~~l~~~~R~~~~i~tK~~~~~~~~--~~~~~~~~~i~~~~~~s 112 (211)
-+...+..++.-+..|..| .|.+. |+ .. ..|+ .++-++|+|-.+.....+ .......+.+...++..
T Consensus 93 ~Pa~lK~~iD~v~~~g~~~-~~~~g~~~---~~----~~L~--gKk~~~i~t~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 162 (199)
T PF02525_consen 93 MPAQLKGWIDRVFTPGFTF-YTPDGKYP---SG----GLLK--GKKALLIVTSGGPEYSYGPPGIPGRSMDHLLPYLRGI 162 (199)
T ss_dssp C-HHHHHHHHHHSHTTTSE-EETTSTTC---GE----ESTT--TSEEEEEEEESSSGGGGSTTSSTTSHHHHHHHHHHHH
T ss_pred cChhHHHHHHHhCcCCeee-eccccccc---cc----cccc--cccEEEEEcCCCChHHhcccCCCCCChhhhHHHHHHH
Confidence 3467888999999999988 66543 22 01 1121 233344555444322100 01223567777778999
Q ss_pred hhHcCCCccceEeecCCCCCCCHHHHHHHHHHHH
Q 028264 113 LKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLV 146 (211)
Q Consensus 113 L~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~ 146 (211)
++-+|.+.++.+.++..+.....+..-++++++.
T Consensus 163 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (199)
T PF02525_consen 163 LKFCGIKDVESFSFEGVDNPDREEALEKALERAA 196 (199)
T ss_dssp HHHTTEEEEEEEEEESTTTCCHHHHHHHHHHHHH
T ss_pred HHhCCCceeeEEEEeCCCCCChHHHHHHHHHHHH
Confidence 9999999999999998762222333455555544
No 164
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=33.17 E-value=1.4e+02 Score=24.52 Aligned_cols=132 Identities=14% Similarity=0.034 Sum_probs=68.6
Q ss_pred CcceecccccCCcCCCCCChHHHHHHHHHHHH-cCCCeeeCcCCcCCCchHHHHHHHHhC-CCCCCeEEEeccCCcCCCC
Q 028264 18 SAQGLGCMAMSCLYGPPEPEPDMIALIHHAIN-SGITLLDTSDIYGPYTNEILVGKALKG-GMRERVELATKFGISFADG 95 (211)
Q Consensus 18 s~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~-~Gin~~DtA~~Yg~g~~e~~lg~~l~~-~~R~~~~i~tK~~~~~~~~ 95 (211)
|+|-+||-.+. +. ++++.|++ +|-..+=+|=---+-... .-++.+-+ ++++++.+----
T Consensus 9 SRL~lGTgky~-------s~----~~m~~ai~aSg~evvTvalRR~~~~~~-~~~~~~~~~i~~~~~~lLPNT------- 69 (247)
T PF05690_consen 9 SRLILGTGKYP-------SP----EVMREAIEASGAEVVTVALRRVNLGSK-PGGDNILDYIDRSGYTLLPNT------- 69 (247)
T ss_dssp -SEEEE-STSS-------SH----HHHHHHHHHTT-SEEEEECCGSTTTS--TTCHHCCCCTTCCTSEEEEE--------
T ss_pred cceEEecCCCC-------CH----HHHHHHHHHhCCcEEEEEEecccCCCC-CCCccHHHHhcccCCEECCcC-------
Confidence 68888987762 22 45666664 576555433211000000 00112222 455554432221
Q ss_pred CCCCCCHHHHHHHHHHHhhHcCCCccceEeecCCCCC-CCHHHHHHHHHHHHHcCCccEEecccccHHHHHHHhcc
Q 028264 96 GKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK-IPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV 170 (211)
Q Consensus 96 ~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~-~~~~~~~~~l~~l~~~G~i~~iGvs~~~~~~l~~~~~~ 170 (211)
....+.++..+..+-..+.++++++-|=.+..+.+. .+.-|++++-++|+++|-+- +--++-++-.-+++.+.
T Consensus 70 -aGc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~V-lPY~~~D~v~akrL~d~ 143 (247)
T PF05690_consen 70 -AGCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVV-LPYCTDDPVLAKRLEDA 143 (247)
T ss_dssp -TT-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EE-EEEE-S-HHHHHHHHHT
T ss_pred -CCCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEE-eecCCCCHHHHHHHHHC
Confidence 123568888888888899999999888776665443 45789999999999999863 44445555544555443
No 165
>cd08319 Death_RAIDD Death domain of RIP-associated ICH-1 homologous protein with a death domain. Death domain (DD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal Caspase Activation and Recruitment Domain (CARD), which interacts with the caspase-2 CARD, and a C-terminal DD, which interacts with the DD of PIDD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD, DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other pr
Probab=32.83 E-value=33 Score=23.08 Aligned_cols=62 Identities=16% Similarity=0.156 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHc-CCccEEecccccHHHHHHHhcc
Q 028264 102 PAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEE-GKIKYIGLSEACAATIRRAHAV 170 (211)
Q Consensus 102 ~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~-G~i~~iGvs~~~~~~l~~~~~~ 170 (211)
.+.+-+.-+.....||.+..|+..+..-.+..-.+.+++.|..+++. |+ +.+.+.+.++++.
T Consensus 9 a~~LG~~W~~Lar~Lgls~~~I~~i~~~~p~~l~eQv~~mL~~W~~r~G~-------~ATv~~L~~aL~~ 71 (83)
T cd08319 9 AQRLGPEWEQVLLDLGLSQTDIYRCKENHPHNVQSQIVEALVKWRQRFGK-------KATVQSLIQSLKA 71 (83)
T ss_pred HHHHhhhHHHHHHHcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCC-------CCcHHHHHHHHHH
Confidence 34556667888899999999998887744444346789999999885 43 4456667776665
No 166
>PRK12569 hypothetical protein; Provisional
Probab=32.63 E-value=2.1e+02 Score=23.52 Aligned_cols=81 Identities=17% Similarity=0.214 Sum_probs=51.0
Q ss_pred eecccccCCcCCCCCChHHHHHHHHHHH-HcCCCeeeCcCCcCCCchHHHHHHHHhCCCCCCeEEEeccCCcCCCC---C
Q 028264 21 GLGCMAMSCLYGPPEPEPDMIALIHHAI-NSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADG---G 96 (211)
Q Consensus 21 glG~~~~~~~~~~~~~~~~~~~~l~~A~-~~Gin~~DtA~~Yg~g~~e~~lg~~l~~~~R~~~~i~tK~~~~~~~~---~ 96 (211)
+||.|.+|. ..+++...++..|- .+|. +.| ....+-+.++--....+-|...-++....| .
T Consensus 14 sfG~~~~g~-----~~D~~lmp~ItsaNIACG~-------HAG---Dp~~M~~tv~lA~~~~V~IGAHPsyPD~~gFGRr 78 (245)
T PRK12569 14 GFGPWRIGD-----GVDEALMPLISSANIATGF-------HAG---DPNIMRRTVELAKAHGVGIGAHPGFRDLVGFGRR 78 (245)
T ss_pred CCCCcCCCC-----ccHHHHHHHhhhHHHhccc-------cCC---CHHHHHHHHHHHHHcCCEeccCCCCCcCCCCCCC
Confidence 678888742 01566778887774 4453 455 455566666554456676766655443333 4
Q ss_pred CCCCCHHHHHHHHHHHhhHc
Q 028264 97 KIRGDPAYVRACCEASLKRL 116 (211)
Q Consensus 97 ~~~~~~~~i~~~~~~sL~~L 116 (211)
....+++++++.+...+..|
T Consensus 79 ~m~~s~~el~~~v~yQigaL 98 (245)
T PRK12569 79 HINASPQELVNDVLYQLGAL 98 (245)
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 45678999998877766666
No 167
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=32.46 E-value=1.4e+02 Score=21.84 Aligned_cols=54 Identities=19% Similarity=0.169 Sum_probs=36.9
Q ss_pred CCHHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCccEEeccc
Q 028264 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSE 158 (211)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~iGvs~ 158 (211)
.+.+.+...+++..+.- -+.-.+=..|...++..+.+.|..+++.|.- .+|+.+
T Consensus 81 v~~~~L~~~L~~~~~~~----~~~~V~I~aD~~~~~~~vv~vmd~l~~aG~~-~v~l~t 134 (141)
T PRK11267 81 VTDETMITALDALTEGK----KDTTIFFRADKTVDYETLMKVMDTLHQAGYL-KIGLVG 134 (141)
T ss_pred ccHHHHHHHHHHHHhcC----CCceEEEEcCCCCCHHHHHHHHHHHHHcCCC-eEEEEe
Confidence 45666666666554422 2333334557888999999999999999954 588765
No 168
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=32.38 E-value=3.3e+02 Score=24.36 Aligned_cols=111 Identities=12% Similarity=0.065 Sum_probs=60.2
Q ss_pred CcCCcCCCchHHHHHHHHhC----CC-CCCeEEEeccCCcCCCCCCCCCCHHHHHHHHHHHhhHcCCC----ccceEeec
Q 028264 57 TSDIYGPYTNEILVGKALKG----GM-RERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDID----CIDLYYQH 127 (211)
Q Consensus 57 tA~~Yg~g~~e~~lg~~l~~----~~-R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~----~lDl~~lh 127 (211)
..-.|| .|+-|-+++++ .+ .+=++|.|-..+.. .-+++..-+++.-+.++.+ .+.++.++
T Consensus 64 ~d~VfG---G~~~L~~~I~~~~~~~~~p~~I~V~tTC~~ei--------IGDDi~~vv~~~~~~~~~e~~~~~~~vi~v~ 132 (454)
T cd01973 64 DSAVFG---GAKRVEEGVLVLARRYPDLRVIPIITTCSTEI--------IGDDIEGVIRKLNEALKEEFPDREVHLIPVH 132 (454)
T ss_pred CceEEC---cHHHHHHHHHHHHHhcCCCCEEEEECCchHhh--------hccCHHHHHHHHHhhhhhccCCCCCeEEEee
Confidence 344677 66677788877 32 23366666654322 2333444444332222111 36788999
Q ss_pred CCCCCCC----HHHHHHHHHH-HHH----cCCccEEeccc--ccHHHHHHHhccCCeeEEcc
Q 028264 128 RVDTKIP----IEVTIGELKK-LVE----EGKIKYIGLSE--ACAATIRRAHAVHPITAVQL 178 (211)
Q Consensus 128 ~~~~~~~----~~~~~~~l~~-l~~----~G~i~~iGvs~--~~~~~l~~~~~~~~~~~~q~ 178 (211)
.|+..-+ .+.+++++-+ +.. +++|.-||-.+ .+.++|+++++...+.++.+
T Consensus 133 tpgF~Gs~~~G~~~a~~ali~~~~~~~~~~~~VNii~~~~~~~D~~ei~~lL~~~Gl~v~~~ 194 (454)
T cd01973 133 TPSFKGSMVTGYDEAVRSVVKTIAKKGAPSGKLNVFTGWVNPGDVVELKHYLSEMDVEANIL 194 (454)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCEEEe
Confidence 9876543 2333433332 222 46677776433 34577888888866666544
No 169
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=32.22 E-value=1.2e+02 Score=22.64 Aligned_cols=80 Identities=15% Similarity=0.204 Sum_probs=55.5
Q ss_pred CCCHHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHH--cCCccEEecccccHHHHHHHhccCCeeEE
Q 028264 99 RGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVE--EGKIKYIGLSEACAATIRRAHAVHPITAV 176 (211)
Q Consensus 99 ~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~--~G~i~~iGvs~~~~~~l~~~~~~~~~~~~ 176 (211)
..+.+.+.+.+++..+.+|++ +|++|-.. -.++.+.+.+..+ +|.|-.=|--++++-.++.+++....-++
T Consensus 24 ~~tl~~i~~~~~~~a~~~g~~-v~~~QSN~------EGelid~I~~a~~~~dgiIINpga~thtS~Ai~DAl~~~~~P~v 96 (140)
T PF01220_consen 24 TTTLEDIEQKCKETAAELGVE-VEFFQSNH------EGELIDWIHEARDDVDGIIINPGAYTHTSIAIRDALKAISIPVV 96 (140)
T ss_dssp SSHHHHHHHHHHHHHHHTTEE-EEEEE-SS------HHHHHHHHHHHTCTTSEEEEE-GGGGHT-HHHHHHHHCCTS-EE
T ss_pred cCCHHHHHHHHHHHHHHCCCe-EEEEecCC------HHHHHHHHHHHHhhCCEEEEccchhccccHHHHHHHHcCCCCEE
Confidence 357899999999999999975 67765442 4567777777754 56676677777888888888888655567
Q ss_pred ccccCcccc
Q 028264 177 QLEWSLWSR 185 (211)
Q Consensus 177 q~~~~~~~~ 185 (211)
.+..|-.+.
T Consensus 97 EVHiSNi~~ 105 (140)
T PF01220_consen 97 EVHISNIHA 105 (140)
T ss_dssp EEESS-GGG
T ss_pred EEEcCCccc
Confidence 776664443
No 170
>PRK08392 hypothetical protein; Provisional
Probab=32.18 E-value=2.5e+02 Score=22.04 Aligned_cols=104 Identities=14% Similarity=0.124 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHcCCCeeeCcCCcCCC---chHHHHHHHHhCCCCCCe--EEEeccCCcCCCCCCCCCCHHHHHHHHHHHh
Q 028264 39 DMIALIHHAINSGITLLDTSDIYGPY---TNEILVGKALKGGMRERV--ELATKFGISFADGGKIRGDPAYVRACCEASL 113 (211)
Q Consensus 39 ~~~~~l~~A~~~Gin~~DtA~~Yg~g---~~e~~lg~~l~~~~R~~~--~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL 113 (211)
...++++.|.+.|++.+=.+++...- .-+..+-+.-+-..+.++ .+..-+.... ... +..++.+
T Consensus 15 ~~~e~v~~A~~~Gl~~i~iTdH~~~~~~~~~~~y~~~i~~l~~~~~i~il~GiE~~~~~-------~~~----~~~~~~~ 83 (215)
T PRK08392 15 SVRDNIAEAERKGLRLVGISDHIHYFTPSKFNAYINEIRQWGEESEIVVLAGIEANITP-------NGV----DITDDFA 83 (215)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCCccchhhHHHHHHHHHHHhhccCceEEEeEEeeecC-------Ccc----hhHHHHH
Confidence 36788999999999999777765311 111222111111112233 2222222111 111 2223334
Q ss_pred hHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCccEEec
Q 028264 114 KRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGL 156 (211)
Q Consensus 114 ~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~iGv 156 (211)
+. .|++ +.-+|........++-++.+.++.+.+.+.-+|=
T Consensus 84 ~~--~D~v-I~SvH~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH 123 (215)
T PRK08392 84 KK--LDYV-IASVHEWFGRPEHHEYIELVKLALMDENVDIIGH 123 (215)
T ss_pred hh--CCEE-EEEeecCcCCcHHHHHHHHHHHHHhcCCCCEEeC
Confidence 43 3554 5667743322335667888888888898777763
No 171
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=32.05 E-value=3.7e+02 Score=24.00 Aligned_cols=137 Identities=16% Similarity=0.188 Sum_probs=69.9
Q ss_pred CChHHHHHHHHHHHHcCCCee---e-CcCCcCCCc-hHHHHHHHHhCC-CCCCe-EEEeccCCcCCCCCCCCCCHHHHHH
Q 028264 35 EPEPDMIALIHHAINSGITLL---D-TSDIYGPYT-NEILVGKALKGG-MRERV-ELATKFGISFADGGKIRGDPAYVRA 107 (211)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gin~~---D-tA~~Yg~g~-~e~~lg~~l~~~-~R~~~-~i~tK~~~~~~~~~~~~~~~~~i~~ 107 (211)
.+.++..+-++..++.|++.| | +-..||... ....+.+.++.. ....+ .| .+.... +..+.+
T Consensus 184 r~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~~~gi~~i--r~~~~~---------p~~i~~ 252 (459)
T PRK14338 184 RPLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEAVHEIPGLERL--RFLTSH---------PAWMTD 252 (459)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHHHHhcCCcceE--EEEecC---------hhhcCH
Confidence 467778888888899998655 3 223566321 122244444331 11121 11 111111 233333
Q ss_pred HHHHHhhHcC--CCccceEeec-------CCCCCCCHHHHHHHHHHHHHc--CCccE----EecccccHHHHHHHhcc--
Q 028264 108 CCEASLKRLD--IDCIDLYYQH-------RVDTKIPIEVTIGELKKLVEE--GKIKY----IGLSEACAATIRRAHAV-- 170 (211)
Q Consensus 108 ~~~~sL~~Lg--~~~lDl~~lh-------~~~~~~~~~~~~~~l~~l~~~--G~i~~----iGvs~~~~~~l~~~~~~-- 170 (211)
.+-+.+++++ ..++++=+=+ ........++..++++.+++. |..-. +|+.+.+.+.+++.++.
T Consensus 253 ell~~l~~~~~~~~~v~lglQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~i~~d~IvG~PgET~ed~~~ti~~l~ 332 (459)
T PRK14338 253 RLIHAVARLPKCCPHINLPVQAGDDEVLKRMRRGYTVARYRELIARIREAIPDVSLTTDIIVGHPGETEEQFQRTYDLLE 332 (459)
T ss_pred HHHHHHhcccccccceecCcccCCHHHHHhccCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 4444444443 3333332212 123334678889999999887 43211 68888888877666654
Q ss_pred -CCeeEEc-cccCc
Q 028264 171 -HPITAVQ-LEWSL 182 (211)
Q Consensus 171 -~~~~~~q-~~~~~ 182 (211)
.+++.++ ..|++
T Consensus 333 ~l~~~~v~i~~ysp 346 (459)
T PRK14338 333 EIRFDKVHIAAYSP 346 (459)
T ss_pred HcCCCEeEEEecCC
Confidence 5555443 24443
No 172
>PRK03031 rnpA ribonuclease P; Reviewed
Probab=31.87 E-value=1.9e+02 Score=20.65 Aligned_cols=64 Identities=17% Similarity=0.114 Sum_probs=43.7
Q ss_pred CCCCeEEEeccCCcCCCCCCCCCCHHHHHHHHHHHhhHcCC---CccceEeecCCCCC-CCHHHHHHHHHHHHHc
Q 028264 78 MRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDI---DCIDLYYQHRVDTK-IPIEVTIGELKKLVEE 148 (211)
Q Consensus 78 ~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~---~~lDl~~lh~~~~~-~~~~~~~~~l~~l~~~ 148 (211)
+|=-+.|+-|.+... ..+..+++.+++.++.+.. ...|++++..+... .+..++.+.|..+.+.
T Consensus 47 ~R~G~~VsKK~~~~A-------V~RNriKR~lRe~~R~~~~~l~~g~diVvi~r~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03031 47 TRFGISISQKVSKKA-------VVRNRIKRQIRAALRQLLPRIAPGWDLVIIVKPTAAECNYEQFLQELEQLLIQ 114 (122)
T ss_pred cEEEEEEecccccch-------hhhhHHHHHHHHHHHHhhhccCCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 344456666655333 4577788888888876532 35799999988654 5678888888877654
No 173
>PRK03957 V-type ATP synthase subunit F; Provisional
Probab=31.62 E-value=1.8e+02 Score=20.11 Aligned_cols=66 Identities=24% Similarity=0.203 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHcCCccEEecccccHHHHHHHhccCCeeEEccccCccccCch-hhHHHHHHhhcCc
Q 028264 136 EVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPITAVQLEWSLWSRDVE-AEIVPTCSDCLGN 201 (211)
Q Consensus 136 ~~~~~~l~~l~~~G~i~~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~-~~l~~~~~~~~~~ 201 (211)
+++.++++++.+++.+.-|=+++.-++.+...++...|.++.++-.--....+ ..+.+..++-+|+
T Consensus 30 ee~~~~l~~l~~~~d~gII~ite~~~~~i~~~i~~~~P~Ii~IP~~~g~~~~~~~~i~~~v~raiG~ 96 (100)
T PRK03957 30 EEAKNAIKELVENDEIGIIIITERIAEEIRDLISVALPIIVEIPDKSGSIERENDPVKELVRRAIGV 96 (100)
T ss_pred HHHHHHHHHHhhCCCeEEEEEcHHHHHHHHHHHhcCCCEEEEECCCCCCCccchHHHHHHHHHHhCc
Confidence 78899999999888877777888878888777777778888776533222222 3566666665553
No 174
>cd08590 PI-PLCc_Rv2075c_like Catalytic domain of uncharacterized Mycobacterium tuberculosis Rv2075c-like proteins. This subfamily corresponds to the catalytic domain present in uncharacterized Mycobacterium tuberculosis Rv2075c and its homologs. Members in this family are more closely related to the Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1(SaPLC1)-like proteins rather than the typical bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). In contrast, SaPLC1-like proteins have two Ca2+-chelating amino acid substitutions which convert them to metal-dependent bacterial PI-PLC. Rv2075c and its homologs have the same amino acid substitutions as well, which might suggest they have metal-dependent PI-PLC activity.
Probab=31.48 E-value=2e+02 Score=23.80 Aligned_cols=16 Identities=19% Similarity=0.364 Sum_probs=12.8
Q ss_pred HHHHHHcCCCeeeCcC
Q 028264 44 IHHAINSGITLLDTSD 59 (211)
Q Consensus 44 l~~A~~~Gin~~DtA~ 59 (211)
+..+++.|+|+||---
T Consensus 47 I~~QL~~GvR~LdLdv 62 (267)
T cd08590 47 ITDQLDLGARFLELDV 62 (267)
T ss_pred HHHHHhhCCcEEEEee
Confidence 6778899999999443
No 175
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=31.48 E-value=1.2e+02 Score=28.17 Aligned_cols=57 Identities=21% Similarity=0.106 Sum_probs=40.5
Q ss_pred CCchHHHHHHHHhC-CCCCCeEEEeccCCcCCCCCCCCCCHHHHHHHHHHHhhHc-CCCccceEeecCCCCCC
Q 028264 63 PYTNEILVGKALKG-GMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRL-DIDCIDLYYQHRVDTKI 133 (211)
Q Consensus 63 ~g~~e~~lg~~l~~-~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~L-g~~~lDl~~lh~~~~~~ 133 (211)
.|.+-+.++++|.. .+|+++-|..--. -++ +-+-.||+|| |..|+.-+.+-|-.+..
T Consensus 631 ~gGsGkEF~~aLGGN~pREQFTvVmLTY-----------ERe---~VLm~sLeRL~gLPYLnKvvVVWNspk~ 689 (907)
T KOG2264|consen 631 AGGSGKEFSKALGGNRPREQFTVVMLTY-----------ERE---AVLMGSLERLHGLPYLNKVVVVWNSPKD 689 (907)
T ss_pred CCCchHHHHHHhcCCCccceEEEEEEEe-----------hHH---HHHHHHHHHhhCCcccceEEEEeCCCCC
Confidence 34677889999966 7889877665431 233 3367889999 89999988888754433
No 176
>PRK02399 hypothetical protein; Provisional
Probab=31.23 E-value=1.7e+02 Score=25.84 Aligned_cols=73 Identities=16% Similarity=0.196 Sum_probs=46.1
Q ss_pred HHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCccEE--------------ecccccHHHHHHHhccCCe
Q 028264 108 CCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYI--------------GLSEACAATIRRAHAVHPI 173 (211)
Q Consensus 108 ~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~i--------------Gvs~~~~~~l~~~~~~~~~ 173 (211)
+++...++|.-...|.+.+|.-..- =++||+|+++|.+..+ |+.+-.++.++.+.+..=|
T Consensus 200 ~v~~~~~~Le~~GyEvlVFHATG~G------GraME~Li~~G~~~gVlDlTttEv~d~l~GGv~sagp~Rl~Aa~~~gIP 273 (406)
T PRK02399 200 CVQAAREELEARGYEVLVFHATGTG------GRAMEKLIDSGLIAGVLDLTTTEVCDELFGGVLAAGPDRLEAAARTGIP 273 (406)
T ss_pred HHHHHHHHHHhCCCeEEEEcCCCCc------hHHHHHHHHcCCceEEEEcchHHHHHHHhCcCccCCccHHHHHHHcCCC
Confidence 3444444444444699999975432 2689999999999764 4555677888888776322
Q ss_pred ------eEEccccCccccC
Q 028264 174 ------TAVQLEWSLWSRD 186 (211)
Q Consensus 174 ------~~~q~~~~~~~~~ 186 (211)
.+.+++|-+.+.-
T Consensus 274 ~Vvs~GalDmVnFg~~~tv 292 (406)
T PRK02399 274 QVVSPGALDMVNFGAPDTV 292 (406)
T ss_pred EEecCCceeeeecCCcccc
Confidence 3344555555543
No 177
>PRK11024 colicin uptake protein TolR; Provisional
Probab=31.13 E-value=1.4e+02 Score=21.86 Aligned_cols=53 Identities=19% Similarity=0.146 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCccEEecc
Q 028264 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS 157 (211)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~iGvs 157 (211)
.+.+.+...++..++. ..|...+=..|...+++.+.+.|+.+++.|.- .+++.
T Consensus 85 v~~~~L~~~l~~~~~~----~~~~~V~i~aD~~~~~~~vv~vmd~~k~aG~~-~v~l~ 137 (141)
T PRK11024 85 LPEEQVVAEAKSRFKA----NPKTVFLIGGAKDVPYDEIIKALNLLHSAGVK-SVGLM 137 (141)
T ss_pred cCHHHHHHHHHHHHhh----CCCceEEEEcCCCCCHHHHHHHHHHHHHcCCC-eEEEE
Confidence 3556666666655443 23444444568889999999999999999854 46664
No 178
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=31.00 E-value=2.1e+02 Score=20.85 Aligned_cols=18 Identities=11% Similarity=0.218 Sum_probs=15.1
Q ss_pred HHHHHHHHHcCCCeeeCc
Q 028264 41 IALIHHAINSGITLLDTS 58 (211)
Q Consensus 41 ~~~l~~A~~~Gin~~DtA 58 (211)
...+..+++.|+|+||.-
T Consensus 31 ~~~i~~qL~~GvR~~dir 48 (135)
T smart00148 31 VEGYIQALDHGCRCVELD 48 (135)
T ss_pred HHHHHHHHHhCCCEEEEE
Confidence 456889999999999954
No 179
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=30.66 E-value=2.3e+02 Score=24.79 Aligned_cols=120 Identities=13% Similarity=0.067 Sum_probs=71.1
Q ss_pred CCCeEEEeccCCcCC--------CCCCCCCCHHHHHHHHHHHhhHcCC-------------CccceEeecCC-CCCCCHH
Q 028264 79 RERVELATKFGISFA--------DGGKIRGDPAYVRACCEASLKRLDI-------------DCIDLYYQHRV-DTKIPIE 136 (211)
Q Consensus 79 R~~~~i~tK~~~~~~--------~~~~~~~~~~~i~~~~~~sL~~Lg~-------------~~lDl~~lh~~-~~~~~~~ 136 (211)
|.-+.|+|-+|.... .|...+.+..+|..|+....+.++. ..+.-+.+-.. ++...++
T Consensus 106 r~TlCvSSQvGC~mgC~FCaTG~~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~i~NIVfMGMGEPL~Nyd 185 (371)
T PRK14461 106 RATVCVSTQAGCGMGCVFCATGTLGLLRNLSSGEIVAQVIWASRELRAMGAAISKRHAGPVGRVTNLVFMGMGEPFANYD 185 (371)
T ss_pred CceEEEEccCCccCCCCcccCCCCCcccCCCHHHHHHHHHHHHHHhhhcccccccccccccCceeeEEEEccCCchhhHH
Confidence 666778887775432 1255678999999999887766532 12333333332 3445568
Q ss_pred HHHHHHHHHHHc-CC---ccEEecccccH-HHHHHHhccCCeeEEccccCc-----------cccC-chhhHHHHHHhh
Q 028264 137 VTIGELKKLVEE-GK---IKYIGLSEACA-ATIRRAHAVHPITAVQLEWSL-----------WSRD-VEAEIVPTCSDC 198 (211)
Q Consensus 137 ~~~~~l~~l~~~-G~---i~~iGvs~~~~-~~l~~~~~~~~~~~~q~~~~~-----------~~~~-~~~~l~~~~~~~ 198 (211)
.++++++-+.+. |. -|.|=||+... ..|.++.+...+.-..+..|. .++. +..+++++|++.
T Consensus 186 nV~~ai~il~d~~g~~is~R~ITVST~Givp~I~~la~~~~~v~LAiSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y 264 (371)
T PRK14461 186 RWWQAVERLHDPQGFNLGARSMTVSTVGLVKGIRRLANERLPINLAISLHAPDDALRSELMPVNRRYPIADLMAATRDY 264 (371)
T ss_pred HHHHHHHHhcCccccCcCCCceEEEeecchhHHHHHHhcccCceEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHH
Confidence 899999999764 22 25677777654 467888775433333333332 2222 334677777654
No 180
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=30.66 E-value=3.9e+02 Score=23.83 Aligned_cols=106 Identities=16% Similarity=0.215 Sum_probs=68.2
Q ss_pred HHHHHHHHcCCCeeeCcCCcC-CCchHHHHHHHHhCCCCCCeEEEeccCCcCCCCCCCCCCHHHHHHHHHHHhhHcCCCc
Q 028264 42 ALIHHAINSGITLLDTSDIYG-PYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDC 120 (211)
Q Consensus 42 ~~l~~A~~~Gin~~DtA~~Yg-~g~~e~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~ 120 (211)
.+++.++++|-- -..-.|| .|.-..-+.+.+...-.-++.-.+=. ..+.+++++.++++.+.++..+
T Consensus 37 ~~lrr~v~~~~l--~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv----------~~gvkdlr~i~e~a~~~~~~gr 104 (436)
T COG2256 37 KPLRRAVEAGHL--HSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV----------TSGVKDLREIIEEARKNRLLGR 104 (436)
T ss_pred chHHHHHhcCCC--ceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc----------cccHHHHHHHHHHHHHHHhcCC
Confidence 568888887631 1222676 36667777777766222222211111 2458899999999988887555
Q ss_pred cceEeecCCCCCCCHHHHHHHHHHHHHcCCccEEecccccH
Q 028264 121 IDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACA 161 (211)
Q Consensus 121 lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~iGvs~~~~ 161 (211)
==++++....+.. ....++|--.++.|.|--||.++-+|
T Consensus 105 ~tiLflDEIHRfn--K~QQD~lLp~vE~G~iilIGATTENP 143 (436)
T COG2256 105 RTILFLDEIHRFN--KAQQDALLPHVENGTIILIGATTENP 143 (436)
T ss_pred ceEEEEehhhhcC--hhhhhhhhhhhcCCeEEEEeccCCCC
Confidence 5566665543221 34567888899999999999998654
No 181
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=30.34 E-value=89 Score=26.17 Aligned_cols=49 Identities=18% Similarity=0.111 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhhHcCCCccc--eEeecCCCCCCCHHHHHHHHHHHHHcCCccE
Q 028264 102 PAYVRACCEASLKRLDIDCID--LYYQHRVDTKIPIEVTIGELKKLVEEGKIKY 153 (211)
Q Consensus 102 ~~~i~~~~~~sL~~Lg~~~lD--l~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~ 153 (211)
.+...+.+++.+++||+.. | .+..-. .....+.+++.+.+|.++|.|-.
T Consensus 81 ~~~~~~~~~~~l~~lgI~~-Dw~~~~~T~--~~~~~~~v~~~f~~L~~~G~iY~ 131 (312)
T cd00668 81 VEEMSGEHKEDFRRLGISY-DWSDEYITT--EPEYSKAVELIFSRLYEKGLIYR 131 (312)
T ss_pred HHHHHHHHHHHHHHhCccc-cCCCCeECC--CHHHHHHHHHHHHHHHHCCCEEe
Confidence 5667888999999999853 4 322211 11235688999999999999844
No 182
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=30.24 E-value=2.8e+02 Score=21.99 Aligned_cols=22 Identities=9% Similarity=-0.105 Sum_probs=17.6
Q ss_pred ChHHHHHHHHHHHHcCCCeeeC
Q 028264 36 PEPDMIALIHHAINSGITLLDT 57 (211)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~Dt 57 (211)
|.+++.++++.|++.|+.-.|+
T Consensus 13 D~~~~~~~l~~al~~~~~~~~i 34 (213)
T cd02069 13 IRDGIEEDTEEARQQYARPLEI 34 (213)
T ss_pred CHHHHHHHHHHHHHcCCCHHHH
Confidence 6788999999999998765543
No 183
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=30.24 E-value=3.4e+02 Score=23.89 Aligned_cols=100 Identities=17% Similarity=0.160 Sum_probs=61.2
Q ss_pred HHHHHHHHHHh-----------hHcCCCccceEeecCCCCC-----CCHHHHHHHHHHHHHc-CCccEEecc---cccHH
Q 028264 103 AYVRACCEASL-----------KRLDIDCIDLYYQHRVDTK-----IPIEVTIGELKKLVEE-GKIKYIGLS---EACAA 162 (211)
Q Consensus 103 ~~i~~~~~~sL-----------~~Lg~~~lDl~~lh~~~~~-----~~~~~~~~~l~~l~~~-G~i~~iGvs---~~~~~ 162 (211)
+.+++.++... +.++ +|++.+|.-..+ .+.++..++.++..+. +.=--|+=| ..+++
T Consensus 128 ~~i~~~~~dV~~dP~~wak~~V~~~~---aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~e 204 (389)
T TIGR00381 128 KPIRMHFEDVMEDPAEWARKCVKEFG---ADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPL 204 (389)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhC---CCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHH
Confidence 55766666655 5555 688888875322 3355666766666442 222334444 57889
Q ss_pred HHHHHhcc--C-CeeEEccccCccccCchhhHHHHHHhh-cCchhhhhhhh
Q 028264 163 TIRRAHAV--H-PITAVQLEWSLWSRDVEAEIVPTCSDC-LGNLALELLRM 209 (211)
Q Consensus 163 ~l~~~~~~--~-~~~~~q~~~~~~~~~~~~~l~~~~~~~-~~~i~~~~l~~ 209 (211)
.+++.++. . +|-++-..... + -..+.+.|+++ ..+++++|..+
T Consensus 205 VLeaaLe~~~G~kpLL~SAt~e~---N-y~~ia~lAk~yg~~Vvv~s~~Di 251 (389)
T TIGR00381 205 VLEKAAEVAEGERCLLASANLDL---D-YEKIANAAKKYGHVVLSWTIMDI 251 (389)
T ss_pred HHHHHHHHhCCCCcEEEecCchh---h-HHHHHHHHHHhCCeEEEEcCCcH
Confidence 99999877 2 34332222111 2 25899999999 88888887544
No 184
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=29.59 E-value=3.7e+02 Score=23.25 Aligned_cols=104 Identities=13% Similarity=0.018 Sum_probs=60.2
Q ss_pred CCcCCCchHHHHHHHHhC----CCCCCeEEEeccCCcCCCCCCCCCCHHHHHHHHHHHhhHcCCCccceEeecCCCCCC-
Q 028264 59 DIYGPYTNEILVGKALKG----GMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKI- 133 (211)
Q Consensus 59 ~~Yg~g~~e~~lg~~l~~----~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~- 133 (211)
-.|| .|+.+-+++++ .+.+=++|.|-.-.. ..-+++..-+++.-++.+ +.++.+|.+....
T Consensus 67 ~V~G---g~~~L~~~i~~~~~~~~P~~i~v~~tC~~~--------~iGdDi~~v~~~~~~~~~---~~vi~v~t~gf~g~ 132 (406)
T cd01967 67 IVFG---GEKKLKKAIKEAYERFPPKAIFVYSTCPTG--------LIGDDIEAVAKEASKELG---IPVIPVNCEGFRGV 132 (406)
T ss_pred eeeC---cHHHHHHHHHHHHHhCCCCEEEEECCCchh--------hhccCHHHHHHHHHHhhC---CCEEEEeCCCeeCC
Confidence 3566 47777788876 233445565554322 223444444444444444 6889999885433
Q ss_pred ----CHHHHHHHHHHHH---------HcCCccEEecccc--cHHHHHHHhccCCeeEE
Q 028264 134 ----PIEVTIGELKKLV---------EEGKIKYIGLSEA--CAATIRRAHAVHPITAV 176 (211)
Q Consensus 134 ----~~~~~~~~l~~l~---------~~G~i~~iGvs~~--~~~~l~~~~~~~~~~~~ 176 (211)
..+.++++|.+.. +.+.|.-||..++ +..++.++++...+.++
T Consensus 133 ~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gi~~~ 190 (406)
T cd01967 133 SQSLGHHIANDAILDHLVGTKEPEEKTPYDVNIIGEYNIGGDAWVIKPLLEELGIRVN 190 (406)
T ss_pred cccHHHHHHHHHHHHHhcCCCCcCCCCCCeEEEEeccccchhHHHHHHHHHHcCCEEE
Confidence 2455666665543 2355777887765 34678888887544443
No 185
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=29.53 E-value=4.1e+02 Score=23.69 Aligned_cols=65 Identities=17% Similarity=0.128 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHHHHHHcCCccE----EecccccHHHHHHHhcc---CCeeEEccccCccccCchhhHHHHHHhh
Q 028264 132 KIPIEVTIGELKKLVEEGKIKY----IGLSEACAATIRRAHAV---HPITAVQLEWSLWSRDVEAEIVPTCSDC 198 (211)
Q Consensus 132 ~~~~~~~~~~l~~l~~~G~i~~----iGvs~~~~~~l~~~~~~---~~~~~~q~~~~~~~~~~~~~l~~~~~~~ 198 (211)
....++..++++.+++.|.--. +|+-..+.+.+++.++. .+++.++ ++++.+-+...+.+.+++.
T Consensus 319 ~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~~l~~~~~~--~~~l~P~PGT~l~~~~~~~ 390 (472)
T TIGR03471 319 GLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKELNPHTIQ--VSLAAPYPGTELYDQAKQN 390 (472)
T ss_pred CCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCcee--eeecccCCCcHHHHHHHHC
Confidence 3456778888888888886533 36666777777666554 3444433 4555555556777777665
No 186
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=29.42 E-value=3.8e+02 Score=23.22 Aligned_cols=100 Identities=13% Similarity=0.038 Sum_probs=58.8
Q ss_pred CChHHHHHHHHHHHHcCCCeeeCcCCcC-CCchHHHHHHHHhCCCC--CCeEEEeccCCcCCCCCCCCCCHHHHHHHHHH
Q 028264 35 EPEPDMIALIHHAINSGITLLDTSDIYG-PYTNEILVGKALKGGMR--ERVELATKFGISFADGGKIRGDPAYVRACCEA 111 (211)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg-~g~~e~~lg~~l~~~~R--~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~ 111 (211)
.+.++..+.++.+.+.|++.|--...-. ....-..+-+.++.+.+ .++ ..+.++ .+.+.+ +
T Consensus 104 ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~~~i~~Ik~~~p~i--~i~~g~---------lt~e~l-----~ 167 (371)
T PRK09240 104 LDEEEIEREMAAIKKLGFEHILLLTGEHEAKVGVDYIRRALPIAREYFSSV--SIEVQP---------LSEEEY-----A 167 (371)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCCCc--eeccCC---------CCHHHH-----H
Confidence 4778899999999999999774321110 00122334445544221 122 223221 345554 5
Q ss_pred HhhHcCCCccceEeecC-C---------CCCCCHHHHHHHHHHHHHcCC
Q 028264 112 SLKRLDIDCIDLYYQHR-V---------DTKIPIEVTIGELKKLVEEGK 150 (211)
Q Consensus 112 sL~~Lg~~~lDl~~lh~-~---------~~~~~~~~~~~~l~~l~~~G~ 150 (211)
.|+..|++++.+.+=-. + .+..++++.+++++.+++.|.
T Consensus 168 ~Lk~aGv~r~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~ 216 (371)
T PRK09240 168 ELVELGLDGVTVYQETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGI 216 (371)
T ss_pred HHHHcCCCEEEEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCC
Confidence 78888888666544221 1 234568999999999999995
No 187
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=29.09 E-value=2.4e+02 Score=20.96 Aligned_cols=73 Identities=15% Similarity=0.029 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCc-cEEecccccHHHHHHHhccCCeeEEc
Q 028264 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKI-KYIGLSEACAATIRRAHAVHPITAVQ 177 (211)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i-~~iGvs~~~~~~l~~~~~~~~~~~~q 177 (211)
+..-.+++.+.+-|+..|-+.+|+= ++ ..++.+....+.+.+.+|.. +.|-+|......-..+-+...+.+.+
T Consensus 9 haG~~lK~~l~~~L~~~g~eV~D~G----~~-~~dypd~a~~va~~V~~~e~~~GIliCGtGiG~siaANKv~GIRaA~ 82 (141)
T PRK12613 9 AHGNALKELIKSFLQEEGYDIIDVT----DI-NSDFIDNTLAVAKAVNEAEGRLGIMVDAYGAGPFMVATKLKGMVAAE 82 (141)
T ss_pred cchHHHHHHHHHHHHHCCCEEEEcC----CC-CCChHHHHHHHHHHHHcCCCceEEEEcCCCHhHhhhhhcCCCeEEEE
Confidence 4567899999999999998888874 22 36777888888888888888 78989988876555555554555443
No 188
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=28.95 E-value=3.5e+02 Score=22.78 Aligned_cols=133 Identities=12% Similarity=0.016 Sum_probs=72.2
Q ss_pred CCChHHHHHHHHHHHHcCCCeeeCcCCcCC--CchHHHHHHHHhCCC-CCCeEEEeccCCcCCCCCCCCCCHHHHHHHHH
Q 028264 34 PEPEPDMIALIHHAINSGITLLDTSDIYGP--YTNEILVGKALKGGM-RERVELATKFGISFADGGKIRGDPAYVRACCE 110 (211)
Q Consensus 34 ~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~--g~~e~~lg~~l~~~~-R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~ 110 (211)
..+.++..++++.+.+.|+..|.-+..-.- -.-.+++ +.+++.+ ..++.|+|-.. .+.+ ..
T Consensus 44 ~ls~eei~~li~~~~~~Gv~~I~~tGGEPllr~dl~~li-~~i~~~~~l~~i~itTNG~--------------ll~~-~~ 107 (329)
T PRK13361 44 VLSLEELAWLAQAFTELGVRKIRLTGGEPLVRRGCDQLV-ARLGKLPGLEELSLTTNGS--------------RLAR-FA 107 (329)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECcCCCccccHHHHH-HHHHhCCCCceEEEEeChh--------------HHHH-HH
Confidence 357788999999999999987754320000 0122222 2233311 22455555421 1222 33
Q ss_pred HHhhHcCCCccceEeecCCCCC--------CCHHHHHHHHHHHHHcCC--c--cEEecccccHHHHHHHhcc---CCeeE
Q 028264 111 ASLKRLDIDCIDLYYQHRVDTK--------IPIEVTIGELKKLVEEGK--I--KYIGLSEACAATIRRAHAV---HPITA 175 (211)
Q Consensus 111 ~sL~~Lg~~~lDl~~lh~~~~~--------~~~~~~~~~l~~l~~~G~--i--~~iGvs~~~~~~l~~~~~~---~~~~~ 175 (211)
+.|...|++++- +-++.+++. ..++.++++++.+++.|. + ..+.+...+.+++.++++. .++++
T Consensus 108 ~~L~~aGl~~v~-ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~~gi~~ 186 (329)
T PRK13361 108 AELADAGLKRLN-ISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFCRERGLDI 186 (329)
T ss_pred HHHHHcCCCeEE-EEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHHHHhcCCeE
Confidence 455666776654 345554332 247889999999999986 2 2333444566666666554 34444
Q ss_pred EccccCcc
Q 028264 176 VQLEWSLW 183 (211)
Q Consensus 176 ~q~~~~~~ 183 (211)
.-+++-|+
T Consensus 187 ~~ie~mP~ 194 (329)
T PRK13361 187 AFIEEMPL 194 (329)
T ss_pred EEEecccC
Confidence 44444443
No 189
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=28.78 E-value=2.1e+02 Score=22.65 Aligned_cols=84 Identities=12% Similarity=0.110 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCccEEeccc-ccHHHHHHHhccC-CeeEEccc
Q 028264 102 PAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSE-ACAATIRRAHAVH-PITAVQLE 179 (211)
Q Consensus 102 ~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~iGvs~-~~~~~l~~~~~~~-~~~~~q~~ 179 (211)
+++..+ +-+.|-+-|+..+.+= +- ..+..+.+++++++.-=-.||..+ .+.++.+++++.. .|-
T Consensus 15 ~~~a~~-ia~al~~gGi~~iEit---~~-----tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~Fi----- 80 (201)
T PRK06015 15 VEHAVP-LARALAAGGLPAIEIT---LR-----TPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFI----- 80 (201)
T ss_pred HHHHHH-HHHHHHHCCCCEEEEe---CC-----CccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEE-----
Confidence 444443 3344445565544442 21 123556666666543334588887 6788899988873 333
Q ss_pred cCccccCchhhHHHHHHhh-cCch
Q 028264 180 WSLWSRDVEAEIVPTCSDC-LGNL 202 (211)
Q Consensus 180 ~~~~~~~~~~~l~~~~~~~-~~~i 202 (211)
.|| ...+++++.|+++ +.++
T Consensus 81 vSP---~~~~~vi~~a~~~~i~~i 101 (201)
T PRK06015 81 VSP---GTTQELLAAANDSDVPLL 101 (201)
T ss_pred ECC---CCCHHHHHHHHHcCCCEe
Confidence 233 3336899999988 6554
No 190
>PRK10508 hypothetical protein; Provisional
Probab=28.72 E-value=94 Score=26.54 Aligned_cols=41 Identities=20% Similarity=0.179 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHH
Q 028264 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKL 145 (211)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l 145 (211)
.+++.+.+.+++..+++|+|.+ +++.+. .+.++.++.++-|
T Consensus 286 Gtpe~V~~kl~~l~~~~g~del---~~~~~~--~~~e~~~~S~~ll 326 (333)
T PRK10508 286 GDKAKVRHGLQSILRETQADEI---MVNGQI--FDHQARLHSFELA 326 (333)
T ss_pred eCHHHHHHHHHHHHHHHCcCEE---EEECCC--CCHHHHHHHHHHH
Confidence 5899999999999999998876 333332 3445444444433
No 191
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=28.50 E-value=5.2e+02 Score=24.60 Aligned_cols=99 Identities=11% Similarity=0.105 Sum_probs=66.8
Q ss_pred CCChHHHHHHHHHHHHcCCCeeeCcC--CcCCCchHHHHHHHHhCCCCCCeEEEe--ccCCcCCC---C--C----CCCC
Q 028264 34 PEPEPDMIALIHHAINSGITLLDTSD--IYGPYTNEILVGKALKGGMRERVELAT--KFGISFAD---G--G----KIRG 100 (211)
Q Consensus 34 ~~~~~~~~~~l~~A~~~Gin~~DtA~--~Yg~g~~e~~lg~~l~~~~R~~~~i~t--K~~~~~~~---~--~----~~~~ 100 (211)
+.|.++.+++++...+.|+.-|=.+. +|-+-..|..+++.+++.- .++-|++ ++++...- . . ....
T Consensus 135 ~lD~~~v~~~~~~l~~~gv~siAVs~~~S~~NP~HE~~v~eiire~~-~~i~V~~shev~p~~~~~eR~~TavlnA~L~p 213 (674)
T COG0145 135 PLDEEEVREAAAALKAAGVEAIAVSSLFSYRNPEHELRVAEIIREIG-PDIPVSLSHEVSPEIGEYERANTAVLNAYLSP 213 (674)
T ss_pred cCCHHHHHHHHHHHHhCCCcEEEEEEecccCCcHHHHHHHHHHHHhc-CCceEEechhcchhcCcccchhhheeeeeehH
Confidence 36889999999999999998665443 4556689999999998844 6666666 77763311 0 0 1111
Q ss_pred CHHHHHHHHHHHhhHcCCCccceEeecCCCCCCC
Q 028264 101 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIP 134 (211)
Q Consensus 101 ~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~ 134 (211)
-.+...++++..|+.-|.+ ..++++.+-....+
T Consensus 214 i~~~yl~~v~~~l~~~g~~-~~l~~m~sdGgl~~ 246 (674)
T COG0145 214 ILRRYLEAVKDALKERGIK-ARLMVMQSDGGLVS 246 (674)
T ss_pred HHHHHHHHHHHHHHhcCCC-ceeEEEecCCcccc
Confidence 2345566677777777765 67888887544333
No 192
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=28.43 E-value=3.3e+02 Score=23.29 Aligned_cols=124 Identities=15% Similarity=0.145 Sum_probs=71.7
Q ss_pred HHHHHHHHHcCCCeeeCcCCcCCCchHHHHHHHHhCCCCCC--eEEEeccCCcCCCCCCCCCCHHHHHHHHHHHhhHcCC
Q 028264 41 IALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRER--VELATKFGISFADGGKIRGDPAYVRACCEASLKRLDI 118 (211)
Q Consensus 41 ~~~l~~A~~~Gin~~DtA~~Yg~g~~e~~lg~~l~~~~R~~--~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~ 118 (211)
.++-...|..|.+-=+-|+.+| -++..+.+.|+. -|++ +-|..+ . .. ...-.++++++ +++|.
T Consensus 16 ~~~A~lYY~~gltQ~eIA~~Lg--iSR~~v~rlL~~-Ar~~GiV~I~i~-~-~~-------~~~~~Le~~L~---~~fgL 80 (321)
T COG2390 16 ARAAWLYYVEGLTQSEIAERLG--ISRATVSRLLAK-AREEGIVKISIN-S-PV-------EGCLELEQQLK---ERFGL 80 (321)
T ss_pred HHHHHHHHhcCCCHHHHHHHhC--CCHHHHHHHHHH-HHHCCeEEEEeC-C-CC-------cchHHHHHHHH---HhcCC
Confidence 3333344678888888888888 788888888877 3333 335554 2 11 11222434333 67788
Q ss_pred CccceEeecCCCCCCCHH----HHHHHHHHHHHcCCccEEecccccHHHHHHHhcc------CCeeEEccccCcc
Q 028264 119 DCIDLYYQHRVDTKIPIE----VTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV------HPITAVQLEWSLW 183 (211)
Q Consensus 119 ~~lDl~~lh~~~~~~~~~----~~~~~l~~l~~~G~i~~iGvs~~~~~~l~~~~~~------~~~~~~q~~~~~~ 183 (211)
++..++-.+.++...... ...+.|+++.+.|.+ |||+ |. ..+.++.+. ....++|..=++-
T Consensus 81 ~~a~VVp~~~~~~~~~~~~lg~aaA~~l~~~l~~gdv--igV~-wG-rTv~a~~~~l~~~~~~~~~vV~l~GG~~ 151 (321)
T COG2390 81 KEAIVVPSDSDADDSILRRLGRAAAQYLESLLKPGDV--IGVG-WG-RTLSAVVDNLPPAPLRDVKVVQLTGGVG 151 (321)
T ss_pred CeEEEEcCCCCCchHHHHHHHHHHHHHHHHhCCCCCE--EEEe-cc-HHHHHHHHhcCcCccCCeEEEECCCCCC
Confidence 877776554443333222 347888999999996 5554 22 223333332 3366777755544
No 193
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=27.86 E-value=1.4e+02 Score=29.16 Aligned_cols=58 Identities=16% Similarity=0.099 Sum_probs=43.8
Q ss_pred HHHHHhhHcCCCc--cceEeecCCCCCCCH---HHHHHHHHHHHHcCCccEEecccccHHHHHHH
Q 028264 108 CCEASLKRLDIDC--IDLYYQHRVDTKIPI---EVTIGELKKLVEEGKIKYIGLSEACAATIRRA 167 (211)
Q Consensus 108 ~~~~sL~~Lg~~~--lDl~~lh~~~~~~~~---~~~~~~l~~l~~~G~i~~iGvs~~~~~~l~~~ 167 (211)
++.-+|..+-..+ ++++++..|...-|. +.+.++|+.+... ++.|||-+|..+-.+.+
T Consensus 827 alrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~--~~qiiIISH~eel~e~~ 889 (908)
T COG0419 827 ALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSD--GRQIIIISHVEELKERA 889 (908)
T ss_pred HHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhc--CCeEEEEeChHHHHHhC
Confidence 4556666665556 999999999776554 5678888888888 78899999887754433
No 194
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=27.75 E-value=43 Score=24.64 Aligned_cols=18 Identities=33% Similarity=0.366 Sum_probs=12.8
Q ss_pred HHHHHHHHcCCCeeeCcC
Q 028264 42 ALIHHAINSGITLLDTSD 59 (211)
Q Consensus 42 ~~l~~A~~~Gin~~DtA~ 59 (211)
.-+..+++.|+|+||---
T Consensus 30 ~~i~~QL~~GiR~lDlrv 47 (146)
T PF00388_consen 30 WSIREQLESGIRYLDLRV 47 (146)
T ss_dssp HHHHHHHHTT--EEEEEE
T ss_pred HhHHHHHhccCceEEEEE
Confidence 458899999999999543
No 195
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=27.65 E-value=2.2e+02 Score=22.58 Aligned_cols=85 Identities=13% Similarity=0.117 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCccEEeccc-ccHHHHHHHhccC-CeeEEccc
Q 028264 102 PAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSE-ACAATIRRAHAVH-PITAVQLE 179 (211)
Q Consensus 102 ~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~iGvs~-~~~~~l~~~~~~~-~~~~~q~~ 179 (211)
++...+ +-+.|-.-|++.+.+ -+- .....+.+++++++.-=-.||..+ .+.++.+++++.. .|-
T Consensus 19 ~e~a~~-~~~al~~~Gi~~iEi---t~~-----t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fi----- 84 (204)
T TIGR01182 19 VDDALP-LAKALIEGGLRVLEV---TLR-----TPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFI----- 84 (204)
T ss_pred HHHHHH-HHHHHHHcCCCEEEE---eCC-----CccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEE-----
Confidence 444433 444555667654444 331 124566666666654335689887 6788999998873 333
Q ss_pred cCccccCchhhHHHHHHhh-cCchh
Q 028264 180 WSLWSRDVEAEIVPTCSDC-LGNLA 203 (211)
Q Consensus 180 ~~~~~~~~~~~l~~~~~~~-~~~i~ 203 (211)
.+| ...+++++.|+++ +.+++
T Consensus 85 vsP---~~~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 85 VSP---GLTPELAKHAQDHGIPIIP 106 (204)
T ss_pred ECC---CCCHHHHHHHHHcCCcEEC
Confidence 233 2236999999998 65543
No 196
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=27.63 E-value=3.7e+02 Score=22.60 Aligned_cols=117 Identities=17% Similarity=0.167 Sum_probs=75.3
Q ss_pred eeeCcCCcCCCchHHHHHHHHhC-CCCCCeEEEeccCCcCCCCCCCCCCHHHHHHHHHHHhhHcCCCccceEeecCCCCC
Q 028264 54 LLDTSDIYGPYTNEILVGKALKG-GMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK 132 (211)
Q Consensus 54 ~~DtA~~Yg~g~~e~~lg~~l~~-~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~ 132 (211)
+-.||.+|+ ..++. ..+.+..+-.|...... ....-+...+......+.+.- |++++.-|-..
T Consensus 152 ~ANT~gvy~---------af~K~l~k~~~~el~l~~~~~~~----~~~~nkv~qeDaN~LikkI~~---DilYLDpPYN~ 215 (330)
T COG3392 152 VANTAGVYG---------AFLKKLKKSAEKELELKLPDFDL----NLNANKVYQEDANELIKKISG---DILYLDPPYNA 215 (330)
T ss_pred hcccHHHHH---------HHHHHHHHhhhhheecccCCccc----cccchHHHHhhHHHHHHhcCC---CEEEeCCCccc
Confidence 445777776 22222 23455555556543221 112345566667777777753 89999876211
Q ss_pred C---------------------------C----------HHHHHHHHHHHHHcCCccEEeccc-----ccHHHHHHHhcc
Q 028264 133 I---------------------------P----------IEVTIGELKKLVEEGKIKYIGLSE-----ACAATIRRAHAV 170 (211)
Q Consensus 133 ~---------------------------~----------~~~~~~~l~~l~~~G~i~~iGvs~-----~~~~~l~~~~~~ 170 (211)
. + ...+.+++++|++.-+.|+|=+|- .+.+.+.+++++
T Consensus 216 rqYs~nYhLLe~IA~y~kP~~~gk~~~~d~~~~KSsfcs~~~a~~af~eLI~d~k~kyIlLSYNneg~~s~e~i~eiL~k 295 (330)
T COG3392 216 RQYSANYHLLETIARYEKPEPKGKTGLIDYSWQKSSFCSRKQATQAFEELISDAKFKYILLSYNNEGLMSEEEILEILEK 295 (330)
T ss_pred cccchHHHHHHHHHhcCCcccccccCCCChhhhhhhhhHHHHHHHHHHHHHhhcCccEEEEecCccccccHHHHHHHHHh
Confidence 1 0 234789999999999999999884 345667777776
Q ss_pred -CCeeEEccccCccccC
Q 028264 171 -HPITAVQLEWSLWSRD 186 (211)
Q Consensus 171 -~~~~~~q~~~~~~~~~ 186 (211)
++..+..-.|+.+...
T Consensus 296 ~G~~~ife~~Y~~Fra~ 312 (330)
T COG3392 296 YGKYSIFETTYKRFRAD 312 (330)
T ss_pred cCcEEEehhHHHHHhcc
Confidence 7888888888887765
No 197
>PRK14865 rnpA ribonuclease P; Provisional
Probab=27.60 E-value=1.9e+02 Score=20.46 Aligned_cols=71 Identities=13% Similarity=0.090 Sum_probs=42.5
Q ss_pred CcceecccccCCcCCCCCChHHHHHHHHHHHHcCCCeeeCcCCcCCCchHHHHHHHHhCCCCCCeEEEeccCCcCCCCCC
Q 028264 18 SAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGK 97 (211)
Q Consensus 18 s~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~~e~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~ 97 (211)
+.+||-...- .|.++.+..++..+++++..=.. .+ +.-+++|..+.+...
T Consensus 45 ~RvG~sVsKK---vg~AV~RNRiKR~lRE~~R~~~~-------------------~l---~~~divii~r~~~~~----- 94 (116)
T PRK14865 45 TKIGITVSRK---VGNAVVRNRIKRLVREFYRLNKS-------------------LF---IVADYNIIAKKGAEQ----- 94 (116)
T ss_pred cEEEEEEecc---cCcchhHHHHHHHHHHHHHHhhc-------------------cC---CCCCEEEEEeCCccc-----
Confidence 4555544332 45667777778888887764100 01 223566666654332
Q ss_pred CCCCHHHHHHHHHHHhhHcCCCc
Q 028264 98 IRGDPAYVRACCEASLKRLDIDC 120 (211)
Q Consensus 98 ~~~~~~~i~~~~~~sL~~Lg~~~ 120 (211)
.+.+.+.+++...|++++..|
T Consensus 95 --~~~~~l~~~l~~ll~~~~~~~ 115 (116)
T PRK14865 95 --LDFQQISRELANALERLRKKY 115 (116)
T ss_pred --CCHHHHHHHHHHHHHHHHhhc
Confidence 577888888888888876544
No 198
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=27.57 E-value=1.6e+02 Score=24.50 Aligned_cols=69 Identities=10% Similarity=0.016 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCccEEecccccHHHHHHHhcc
Q 028264 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV 170 (211)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~iGvs~~~~~~l~~~~~~ 170 (211)
++.++ +..+-+.|.++|++++++-....|.......+.++.+..+.+...++...++ .+...++++++.
T Consensus 23 ~s~e~-k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~ 91 (287)
T PRK05692 23 IPTAD-KIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAA 91 (287)
T ss_pred cCHHH-HHHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHc
Confidence 34443 3446666889999999987555553222233346666666554445555554 467778888776
No 199
>PF10171 DUF2366: Uncharacterised conserved protein (DUF2366); InterPro: IPR019322 This is a set of proteins conserved from nematodes to humans. The function is not known.
Probab=27.14 E-value=1.5e+02 Score=22.90 Aligned_cols=38 Identities=18% Similarity=0.321 Sum_probs=28.4
Q ss_pred cceEeecCCCCCCCHHHHHHHHHHHHHcCCccEEeccc
Q 028264 121 IDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSE 158 (211)
Q Consensus 121 lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~iGvs~ 158 (211)
-++.+++..-++..-.+-++.|.+++.+|++|++-+.-
T Consensus 78 n~l~lv~~~~rNp~S~~hvq~l~~l~nqg~Lr~~nLG~ 115 (173)
T PF10171_consen 78 NDLLLVSPAIRNPTSDKHVQRLMRLRNQGRLRYLNLGL 115 (173)
T ss_pred CceeccChhhcCchHHHHHHHHHHHhcCCceEEeeeee
Confidence 46677776555555577899999999999999865543
No 200
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=27.13 E-value=4e+02 Score=22.78 Aligned_cols=93 Identities=14% Similarity=0.092 Sum_probs=52.2
Q ss_pred HHhhHcCCCccceEeecC-CCC-CCCHHHHHHHHHHHHHcCCc-cEEeccc---ccHHHHHHHhccC---CeeEEccccC
Q 028264 111 ASLKRLDIDCIDLYYQHR-VDT-KIPIEVTIGELKKLVEEGKI-KYIGLSE---ACAATIRRAHAVH---PITAVQLEWS 181 (211)
Q Consensus 111 ~sL~~Lg~~~lDl~~lh~-~~~-~~~~~~~~~~l~~l~~~G~i-~~iGvs~---~~~~~l~~~~~~~---~~~~~q~~~~ 181 (211)
+.-+.+|.|++|+-+.-. |+. +...++....++...+.=.+ -.|..|. -+++.+++.++.. ++-++-..
T Consensus 83 ~q~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~~pLInSat-- 160 (319)
T PRK04452 83 KCVEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGSAE-- 160 (319)
T ss_pred HHHHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEECC--
Confidence 344688888888864332 322 22334444444444333222 2255553 2788888888762 24332222
Q ss_pred ccccCchhhHHHHHHhh-cCchhhhhhh
Q 028264 182 LWSRDVEAEIVPTCSDC-LGNLALELLR 208 (211)
Q Consensus 182 ~~~~~~~~~l~~~~~~~-~~~i~~~~l~ 208 (211)
...-+.+.+.|+++ ..+++.+|..
T Consensus 161 ---~en~~~i~~lA~~y~~~Vva~s~~D 185 (319)
T PRK04452 161 ---EDNYKKIAAAAMAYGHAVIAWSPLD 185 (319)
T ss_pred ---HHHHHHHHHHHHHhCCeEEEEcHHH
Confidence 11125799999999 8888877643
No 201
>PRK00499 rnpA ribonuclease P; Reviewed
Probab=27.06 E-value=2.3e+02 Score=19.94 Aligned_cols=63 Identities=13% Similarity=0.108 Sum_probs=43.2
Q ss_pred CCCCeEEEeccCCcCCCCCCCCCCHHHHHHHHHHHhhHcCC---CccceEeecCCCCC-CCHHHHHHHHHHHHHc
Q 028264 78 MRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDI---DCIDLYYQHRVDTK-IPIEVTIGELKKLVEE 148 (211)
Q Consensus 78 ~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~---~~lDl~~lh~~~~~-~~~~~~~~~l~~l~~~ 148 (211)
+|=-+.|+-|++. . ..+..+++.+++.+..... ...|++++-.+... .+..++.+.|..+.+.
T Consensus 38 ~R~GisVsKKvgk-A-------V~RNriKR~lRE~~R~~~~~~~~~~d~v~i~r~~~~~~~~~~l~~~l~~ll~k 104 (114)
T PRK00499 38 FRVGISVSKKVGN-A-------VVRNRIKRLIRESFRELKDEIKKGYDFVVIARKPAAELDYKEIKKSLIHVLKL 104 (114)
T ss_pred cEEEEEEecccCc-h-------hhHhHHHHHHHHHHHHhhhcccCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 4555677777764 3 4577888888888776532 35799999988643 5677777777777654
No 202
>COG3877 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.04 E-value=2.3e+02 Score=20.06 Aligned_cols=43 Identities=16% Similarity=0.244 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCc
Q 028264 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKI 151 (211)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i 151 (211)
.++-.++..++..|+.||. .|+...+.+..-+.+-+..++|.|
T Consensus 69 ~sYptvR~kld~vlramgy---------~p~~e~~~~i~~~~i~~qle~Gei 111 (122)
T COG3877 69 ISYPTVRTKLDEVLRAMGY---------NPDSENSVNIGKKKIIDQLEKGEI 111 (122)
T ss_pred CccHHHHHHHHHHHHHcCC---------CCCCCChhhhhHHHHHHHHHcCCC
Confidence 5678899999999999995 455444444444555566677886
No 203
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=27.02 E-value=3.9e+02 Score=24.54 Aligned_cols=58 Identities=19% Similarity=0.255 Sum_probs=40.3
Q ss_pred CCCHHHHHHHHHHHhhHcCCCccc---eEeecCCCCCCCHHHHHHHHHHHHHcCCccEEecccccHHHHHH
Q 028264 99 RGDPAYVRACCEASLKRLDIDCID---LYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRR 166 (211)
Q Consensus 99 ~~~~~~i~~~~~~sL~~Lg~~~lD---l~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~iGvs~~~~~~l~~ 166 (211)
..+.....+++.+.|+-||.++ | .+|- ...+--.+++++|+++|++ |...|+ .+++++
T Consensus 49 ~R~~~~~~~~i~~~L~WLGl~w-De~py~QS------eR~~~Y~~~a~~Li~~G~A-Y~CfCt--~eel~~ 109 (513)
T PRK14895 49 ERSTKEAVEAIFSGLKWLGLDW-NGEVIFQS------KRNNLYKEAALKLLQNGKA-YYCFTR--QEEIER 109 (513)
T ss_pred cccChHHHHHHHHHHHHcCCCC-CCCceeEe------CcHHHHHHHHHHHHHcCCe-EEecCc--HHHHHH
Confidence 3466778888999999999985 5 1111 2245567889999999997 666666 444443
No 204
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=26.94 E-value=3.6e+02 Score=23.33 Aligned_cols=99 Identities=12% Similarity=0.042 Sum_probs=59.3
Q ss_pred CCCeEEEeccCCcCC--------CCCCCCCCHHHHHHHHHHHhhHcCCCccceEeecC-CCCCCCHHHHHHHHHHHHHcC
Q 028264 79 RERVELATKFGISFA--------DGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHR-VDTKIPIEVTIGELKKLVEEG 149 (211)
Q Consensus 79 R~~~~i~tK~~~~~~--------~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~-~~~~~~~~~~~~~l~~l~~~G 149 (211)
|.-+.|+|-.+.... .|.....+.+.|..++...-+. +.++-+.+-. =++...++++.+++..+.+..
T Consensus 102 r~t~cvSsQvGC~~~C~FC~Tg~~g~~rnLt~~EIl~Qv~~~~~~---~~i~nIvfmGmGEPL~N~d~vi~al~~l~~~~ 178 (345)
T PRK14466 102 RATLCVSSQVGCKMNCLFCMTGKQGFTGNLTAAQILNQIYSLPER---DKLTNLVFMGMGEPLDNLDEVLKALEILTAPY 178 (345)
T ss_pred ceEEEEEcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhhhhc---CCCCeEEEeeeCcCcccHHHHHHHHHHHhhcc
Confidence 455667766664331 1223457899999998876322 2355555544 344455788999999988763
Q ss_pred Cc----cEEecccccHH-HHHHHhccCCeeEEccccC
Q 028264 150 KI----KYIGLSEACAA-TIRRAHAVHPITAVQLEWS 181 (211)
Q Consensus 150 ~i----~~iGvs~~~~~-~l~~~~~~~~~~~~q~~~~ 181 (211)
-. +.|-||+.... .+.+++...+ ....+..|
T Consensus 179 g~~~s~r~ItVsT~G~~~~i~~l~~~~~-~~LavSLh 214 (345)
T PRK14466 179 GYGWSPKRITVSTVGLKKGLKRFLEESE-CHLAISLH 214 (345)
T ss_pred ccCcCCceEEEEcCCCchHHHHHhhccC-cEEEEEcC
Confidence 33 57788876653 4777665433 23344444
No 205
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=26.80 E-value=1.1e+02 Score=25.79 Aligned_cols=47 Identities=23% Similarity=0.258 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCc
Q 028264 102 PAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKI 151 (211)
Q Consensus 102 ~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i 151 (211)
.+...+.+++.+++||++ +|.+.-. ......+.+.+.+++|+++|.+
T Consensus 68 ~~~~~~~~~~~l~~LgI~-~D~~~~t--t~~~~~~~v~~i~~~L~ekG~i 114 (319)
T cd00814 68 CDKYHEIFKDLFKWLNIS-FDYFIRT--TSPRHKEIVQEFFKKLYENGYI 114 (319)
T ss_pred HHHHHHHHHHHHHHcCCc-CCCCeeC--CCHHHHHHHHHHHHHHHHCCCE
Confidence 567788899999999986 5754221 1112345678999999999998
No 206
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=26.77 E-value=1.3e+02 Score=21.92 Aligned_cols=51 Identities=10% Similarity=0.104 Sum_probs=32.5
Q ss_pred HHHHHHHhhHcCCCccceEeecCCCCCC-CHHHHHHHHHHHHHcCCccEEec
Q 028264 106 RACCEASLKRLDIDCIDLYYQHRVDTKI-PIEVTIGELKKLVEEGKIKYIGL 156 (211)
Q Consensus 106 ~~~~~~sL~~Lg~~~lDl~~lh~~~~~~-~~~~~~~~l~~l~~~G~i~~iGv 156 (211)
+..+.+.|+.+....+|.++++..|+.. +..++...++.+.+.--|+-+-+
T Consensus 54 Rp~l~~ll~~~~~g~vd~vvv~~ldRl~R~~~d~~~~~~~l~~~~gv~l~~~ 105 (140)
T cd03770 54 RPGFNRMIEDIEAGKIDIVIVKDMSRLGRNYLKVGLYMEILFPKKGVRFIAI 105 (140)
T ss_pred CHHHHHHHHHHHcCCCCEEEEeccchhccCHHHHHHHHHHHHhhcCcEEEEe
Confidence 3456666666666678999988887653 35666777777777623333333
No 207
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=26.56 E-value=4e+02 Score=22.56 Aligned_cols=101 Identities=17% Similarity=0.080 Sum_probs=56.3
Q ss_pred HHhCCCCCCeEEEeccCCcCCCCCCCCCCHHHHHHHHHHHhhHcCCCccceEeecCCCCC----CCH--HHHHHHHHHHH
Q 028264 73 ALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK----IPI--EVTIGELKKLV 146 (211)
Q Consensus 73 ~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~----~~~--~~~~~~l~~l~ 146 (211)
++++.-.+++.|..|+..... .....+.+... .+-+.|+..|+++++ +|..... .+. ...++.+++++
T Consensus 213 aIR~~vG~d~~v~vri~~~~~--~~~g~~~~e~~-~ia~~Le~~gvd~ie---v~~g~~~~~~~~~~~~~~~~~~~~~ir 286 (336)
T cd02932 213 AVRAVWPEDKPLFVRISATDW--VEGGWDLEDSV-ELAKALKELGVDLID---VSSGGNSPAQKIPVGPGYQVPFAERIR 286 (336)
T ss_pred HHHHHcCCCceEEEEEccccc--CCCCCCHHHHH-HHHHHHHHcCCCEEE---ECCCCCCcccccCCCccccHHHHHHHH
Confidence 343323457788889875321 01123444433 233456667765554 4432111 111 12345666677
Q ss_pred HcCCccEEecccc-cHHHHHHHhccCCeeEEccc
Q 028264 147 EEGKIKYIGLSEA-CAATIRRAHAVHPITAVQLE 179 (211)
Q Consensus 147 ~~G~i~~iGvs~~-~~~~l~~~~~~~~~~~~q~~ 179 (211)
+.=.+--++..+. +++..+++++....+.+++-
T Consensus 287 ~~~~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~g 320 (336)
T cd02932 287 QEAGIPVIAVGLITDPEQAEAILESGRADLVALG 320 (336)
T ss_pred hhCCCCEEEeCCCCCHHHHHHHHHcCCCCeehhh
Confidence 6656666777764 78889999988777887774
No 208
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=26.53 E-value=3.9e+02 Score=22.61 Aligned_cols=115 Identities=14% Similarity=-0.029 Sum_probs=58.1
Q ss_pred HHHHHHHHHHcCCCeeeCcCCcCCCchHHHHHHHHhCCCCCCeEEEeccCCcCCCCCCCCCCHHHHHHHHHHHhhHcCCC
Q 028264 40 MIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDID 119 (211)
Q Consensus 40 ~~~~l~~A~~~Gin~~DtA~~Yg~g~~e~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~ 119 (211)
.+++...|..+|+.|+-++..+-.-+..+.+.++++. +.--+|..+...... ...+++...+..+. ...+.
T Consensus 164 kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~~~--~Gps~I~v~sPC~~~----~~~~~~~~~~~~kl---Avetg 234 (299)
T PRK11865 164 KKNMPLIMAAHGIPYVATASIGYPEDFMEKVKKAKEV--EGPAYIQVLQPCPTG----WGFPPEKTIEIGRL---AVETG 234 (299)
T ss_pred CCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHhC--CCCEEEEEECCCCCC----CCCCHHHHHHHHHH---HHhcC
Confidence 3556677778899999988776533444555555532 334455555543331 22344443333333 33355
Q ss_pred ccceEeecCCCCCC--CHHH-----HHHHHHHHHHcCCccEEecccccHHHHHHHh
Q 028264 120 CIDLYYQHRVDTKI--PIEV-----TIGELKKLVEEGKIKYIGLSEACAATIRRAH 168 (211)
Q Consensus 120 ~lDl~~lh~~~~~~--~~~~-----~~~~l~~l~~~G~i~~iGvs~~~~~~l~~~~ 168 (211)
+.=||-...-.... ...+ ...--+-|+.+|+.+++ ++++++++.
T Consensus 235 ~~plye~~~g~~~~~~~~~~ld~~~~~pv~~~l~~q~Rf~~L-----~~~~~~~~q 285 (299)
T PRK11865 235 YWPLFEIENGKFKITYEPLHLDRRTRKPIEEYLKVQGRFKHL-----TEEDIEILQ 285 (299)
T ss_pred ceeEEEEECCeeccCCCcccccccCCCCHHHHHhhCcchhcC-----CHHHHHHHH
Confidence 66666554321110 0111 12223345568888777 455555443
No 209
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=26.45 E-value=2e+02 Score=22.74 Aligned_cols=64 Identities=14% Similarity=0.037 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCccEEecccccHHHHHHHhc
Q 028264 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHA 169 (211)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~iGvs~~~~~~l~~~~~ 169 (211)
++.+.. ..+-+.|.++|++++++- .|....+..+.++.+.+.... .+-.+++......+++.++
T Consensus 11 ~~~~~k-~~i~~~L~~~Gv~~iEvg---~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~ 74 (237)
T PF00682_consen 11 FSTEEK-LEIAKALDEAGVDYIEVG---FPFASEDDFEQVRRLREALPN--ARLQALCRANEEDIERAVE 74 (237)
T ss_dssp --HHHH-HHHHHHHHHHTTSEEEEE---HCTSSHHHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHH
T ss_pred cCHHHH-HHHHHHHHHhCCCEEEEc---ccccCHHHHHHhhhhhhhhcc--cccceeeeehHHHHHHHHH
Confidence 444444 445556999999988887 332222233455555555555 3444555555666666444
No 210
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=26.42 E-value=2.8e+02 Score=20.71 Aligned_cols=73 Identities=11% Similarity=0.024 Sum_probs=53.5
Q ss_pred CCHHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCc-cEEecccccHHHHHHHhccCCeeEE
Q 028264 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKI-KYIGLSEACAATIRRAHAVHPITAV 176 (211)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i-~~iGvs~~~~~~l~~~~~~~~~~~~ 176 (211)
...-.+++.+.+-|+..|.+-.|+-. +...++.+.-..+.+.+.+|.. +.|-+|......-..+-+...+.+.
T Consensus 9 haG~~lK~~l~~~L~~~G~eV~D~G~----~~~~dYpd~a~~va~~V~~~~~~~GIliCGTGiG~siaANK~~GIRAA 82 (142)
T PRK08621 9 KAGFELKEVVKDYLEDNKYEVVDVTE----EGAEDFVDSTLAVAKEVNKSEDNLGIVIDAYGAGSFMVATKIKGMVAA 82 (142)
T ss_pred cchHHHHHHHHHHHHHCCCEEEECCC----CCCCCcHHHHHHHHHHHHcCCCceEEEEcCCChhhhhhhhcCCCeEEE
Confidence 44677999999999999988888743 3346677888888888888887 7788888777655555444444443
No 211
>PRK10997 yieM hypothetical protein; Provisional
Probab=26.41 E-value=2.1e+02 Score=26.04 Aligned_cols=67 Identities=10% Similarity=0.096 Sum_probs=45.7
Q ss_pred HHHHHHHHHhhHcCC---CccceEeecCCCCCCCHHHHHHHHHHHHHcCCccEEecc--cccHHHHHHHhcc
Q 028264 104 YVRACCEASLKRLDI---DCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS--EACAATIRRAHAV 170 (211)
Q Consensus 104 ~i~~~~~~sL~~Lg~---~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~iGvs--~~~~~~l~~~~~~ 170 (211)
.+..+++..++.++. ..-|++++-..-.....+++.+.+..+++++..|..|++ ++....+.++.+.
T Consensus 398 Dl~~aL~~al~~l~~~~~r~adIVVISDF~~~~~~eel~~~L~~Lk~~~~~rf~~l~i~~~~~p~l~~ifD~ 469 (487)
T PRK10997 398 DLAPCLRAIIEKMQGREWFDADAVVISDFIAQRLPDELVAKVKELQRQHQHRFHAVAMSAHGKPGIMRIFDH 469 (487)
T ss_pred cHHHHHHHHHHHHcccccCCceEEEECCCCCCCChHHHHHHHHHHHHhcCcEEEEEEeCCCCCchHHHhcCe
Confidence 366666767777753 257888888764434457899999999997777777765 4445556666443
No 212
>PF12728 HTH_17: Helix-turn-helix domain
Probab=26.00 E-value=1.4e+02 Score=17.23 Aligned_cols=30 Identities=13% Similarity=0.216 Sum_probs=22.3
Q ss_pred HHHHHHHHcCCccEEeccc---ccHHHHHHHhc
Q 028264 140 GELKKLVEEGKIKYIGLSE---ACAATIRRAHA 169 (211)
Q Consensus 140 ~~l~~l~~~G~i~~iGvs~---~~~~~l~~~~~ 169 (211)
..+.++.++|.+..+++.. ++.+.+++.++
T Consensus 16 ~tv~~~~~~g~i~~~~~g~~~~~~~~~l~~~~~ 48 (51)
T PF12728_consen 16 STVYRWIRQGKIPPFKIGRKWRIPKSDLDRWLE 48 (51)
T ss_pred HHHHHHHHcCCCCeEEeCCEEEEeHHHHHHHHH
Confidence 4567888899998888644 66777777664
No 213
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=25.69 E-value=91 Score=21.42 Aligned_cols=50 Identities=24% Similarity=0.215 Sum_probs=36.4
Q ss_pred HHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCccEEecc
Q 028264 105 VRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS 157 (211)
Q Consensus 105 i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~iGvs 157 (211)
....+-.-|...|+||.=.+--. -..+.+++-+.+++|.+.|++..+.=+
T Consensus 8 l~~~IL~hl~~~~~Dy~k~ia~~---l~~~~~~v~~~l~~Le~~GLler~~g~ 57 (92)
T PF10007_consen 8 LDLKILQHLKKAGPDYAKSIARR---LKIPLEEVREALEKLEEMGLLERVEGK 57 (92)
T ss_pred hHHHHHHHHHHHCCCcHHHHHHH---HCCCHHHHHHHHHHHHHCCCeEEecCc
Confidence 44455666777777776544333 256789999999999999999888754
No 214
>PLN02229 alpha-galactosidase
Probab=25.68 E-value=82 Score=28.06 Aligned_cols=44 Identities=9% Similarity=0.115 Sum_probs=33.8
Q ss_pred cccCcceecccccCCcCCCCCChHHHHHHHHHH-----HHcCCCeeeCcCCc
Q 028264 15 LEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHA-----INSGITLLDTSDIY 61 (211)
Q Consensus 15 ~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A-----~~~Gin~~DtA~~Y 61 (211)
...|++|..+|-. ++...+++..++..+.. .++||++|-.-..+
T Consensus 60 a~tPpmGWnSWn~---~~~~i~E~~i~~~ad~~v~~Gl~~~Gy~yv~iDDgW 108 (427)
T PLN02229 60 ARTPQMGWNSWNF---FACNINETVIKETADALVSTGLADLGYIHVNIDDCW 108 (427)
T ss_pred cCCCCceEEchhh---hCcccCHHHHHHHHHHHHHhHHHhCCCEEEEEcCCc
Confidence 4578999999876 66677888888888874 67899988655544
No 215
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=25.67 E-value=4.2e+02 Score=22.54 Aligned_cols=121 Identities=12% Similarity=0.023 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHH-cCCCeeeCcCCcCCCchHHHHH---HHHhCCC-CCCeEEEeccCCcCCCCCCCCCCHHHHHHHHHH
Q 028264 37 EPDMIALIHHAIN-SGITLLDTSDIYGPYTNEILVG---KALKGGM-RERVELATKFGISFADGGKIRGDPAYVRACCEA 111 (211)
Q Consensus 37 ~~~~~~~l~~A~~-~Gin~~DtA~~Yg~g~~e~~lg---~~l~~~~-R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~ 111 (211)
.++..++++..-+ .|++-+--+..-.--.....+. +.+++.+ ...+-+.|+..... +..+.+.+-+
T Consensus 144 ~~~~~~~i~~i~~~~~i~eV~lsGGDPLl~~d~~L~~ll~~L~~i~~~~~IRi~tr~~~~~---------P~rit~el~~ 214 (331)
T TIGR00238 144 KKKWQKALDYIAEHPEIIEILISGGDPLMAKDHELEWLLKRLEEIPHLVRLRIGTRLPVVI---------PQRITDELCE 214 (331)
T ss_pred HHHHHHHHHHHHhCCCcCEEEEECCccccCCHHHHHHHHHHHHhcCCccEEEeecCCCccC---------chhcCHHHHH
Confidence 5667777777654 4787554332110001222232 3333333 24566777754222 3445556666
Q ss_pred HhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCccEEecc-------cccHHHHHHHhcc
Q 028264 112 SLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS-------EACAATIRRAHAV 170 (211)
Q Consensus 112 sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~iGvs-------~~~~~~l~~~~~~ 170 (211)
.|++.|...+. ..|.-.+....+++.++++.|++.|.. +++. |.+++.+.++.+.
T Consensus 215 ~L~~~~~~~~~--vsh~nh~~Ei~~~~~~ai~~L~~aGi~--v~~qtvLl~gvnD~~~~l~~L~~~ 276 (331)
T TIGR00238 215 LLASFELQLML--VTHINHCNEITEEFAEAMKKLRTVNVT--LLNQSVLLRGVNDRAQILAKLSIA 276 (331)
T ss_pred HHHhcCCcEEE--EccCCChHhCCHHHHHHHHHHHHcCCE--EEeecceECCcCCCHHHHHHHHHH
Confidence 77777764433 333322222347889999999999974 4433 3455555555443
No 216
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=25.60 E-value=3.7e+02 Score=24.08 Aligned_cols=54 Identities=13% Similarity=0.030 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCccEEeccc
Q 028264 99 RGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSE 158 (211)
Q Consensus 99 ~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~iGvs~ 158 (211)
..+.....+++.+.|+-||.++ |=.+ -.....+.-.+++++|.++|++ |...|+
T Consensus 44 ~R~~~e~~~~I~~~L~WlGl~w-De~y----~QSeR~~~Y~~~a~~Li~~G~A-Y~C~cs 97 (433)
T PRK12410 44 ERNIEGKDKEILEILNLFGISW-DKLV----YQSENLKFHRQMAEKLLSEKKA-FACFCS 97 (433)
T ss_pred CcCChHHHHHHHHHHHHcCCCC-CCCe----ehhccHHHHHHHHHHHHHcCCe-eeecCC
Confidence 3456777889999999999986 5211 1123345667888999999997 566655
No 217
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=25.52 E-value=2.2e+02 Score=26.48 Aligned_cols=94 Identities=17% Similarity=0.022 Sum_probs=62.4
Q ss_pred HHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCccEEecccccHHHHHHH-hc--cCCeeEEcccc
Q 028264 104 YVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRA-HA--VHPITAVQLEW 180 (211)
Q Consensus 104 ~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~iGvs~~~~~~l~~~-~~--~~~~~~~q~~~ 180 (211)
..-+.+-+.|+..|+++ +|-+ |. ..+..++++|.+..+++.|++|.+.+-......+. .. +.+|.++....
T Consensus 20 ~~~~~l~~~L~~~GV~~--vFgi--pG--~~~~~l~dal~~~~~~~~i~~i~~rhE~~Aa~aA~gyar~tgk~gv~~~t~ 93 (616)
T PRK07418 20 TGAYALMDSLKRHGVKH--IFGY--PG--GAILPIYDELYKAEAEGWLKHILVRHEQGAAHAADGYARATGKVGVCFGTS 93 (616)
T ss_pred cHHHHHHHHHHHcCCCE--EEeC--cC--cchHHHHHHHHhcccCCCceEEEeccHHHHHHHHHHHHHHhCCCeEEEECC
Confidence 45778889999999874 3432 22 33456777776655667899999987554433322 22 25788888888
Q ss_pred CccccCchhhHHHHHHhhcCchh
Q 028264 181 SLWSRDVEAEIVPTCSDCLGNLA 203 (211)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~i~ 203 (211)
.+-..+....+.++..+++.++.
T Consensus 94 GPG~~n~l~gl~~A~~d~~Pvl~ 116 (616)
T PRK07418 94 GPGATNLVTGIATAQMDSVPMVV 116 (616)
T ss_pred CccHHHHHHHHHHHHhcCCCEEE
Confidence 87776666678888777744443
No 218
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=25.36 E-value=1.7e+02 Score=26.18 Aligned_cols=47 Identities=15% Similarity=0.166 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCcc
Q 028264 102 PAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIK 152 (211)
Q Consensus 102 ~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~ 152 (211)
.+...+.+.+.+++||+...|.+ |......+++.+..++|+++|.+-
T Consensus 90 ~~~~~~~f~~~~~~Lgi~~~d~~----~r~t~~~~~~~~~i~~L~~kG~aY 136 (463)
T PRK00260 90 TERYIAAFHEDMDALNVLPPDIE----PRATEHIPEIIELIERLIDKGHAY 136 (463)
T ss_pred HHHHHHHHHHHHHHcCCCCCCcc----ccccccHHHHHHHHHHHHHCCCEE
Confidence 56677789999999999777764 333456778888899999999984
No 219
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=25.32 E-value=3.8e+02 Score=21.97 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHc--CCccEEeccccc
Q 028264 135 IEVTIGELKKLVEE--GKIKYIGLSEAC 160 (211)
Q Consensus 135 ~~~~~~~l~~l~~~--G~i~~iGvs~~~ 160 (211)
..+++++++.+++. |.=-.+|+||-+
T Consensus 173 ~~~~l~~i~~l~~~~pg~p~l~G~Sn~S 200 (261)
T PRK07535 173 GPEVLETIRRIKELYPKVHTTCGLSNIS 200 (261)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEeCCCc
Confidence 45678888899887 877789999943
No 220
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=25.25 E-value=4.4e+02 Score=22.69 Aligned_cols=90 Identities=11% Similarity=-0.003 Sum_probs=57.6
Q ss_pred CCeEEEeccCCcCC--------CCCCCCCCHHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHc-C-
Q 028264 80 ERVELATKFGISFA--------DGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEE-G- 149 (211)
Q Consensus 80 ~~~~i~tK~~~~~~--------~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~-G- 149 (211)
.-+.|+|-.|.... .|.....+...|.+++-..-+.++.....++++-.=++...++.+.+++..+.+. |
T Consensus 105 ~t~CvSsQvGC~m~C~FC~tg~~g~~rnlta~EI~~qv~~~~~~~~~~~~niVFmGmGEPL~N~d~V~~~~~~l~~~~~~ 184 (342)
T PRK14465 105 KTICISSQIGCTLNCKFCATAKLEFQGNLKAHEIVDQVLQVEKIVGDRATNVVFMGMGEPMHNYFNVIRAASILHDPDAF 184 (342)
T ss_pred eEEEEEecCCCCCCCCCCcCCCCCccCCCCHHHHHHHHHHHHHhcCCCceEEEEEcCCcchhhHHHHHHHHHHHhChhhh
Confidence 44677777664321 1244567899999998776666664444555555445556668889999888764 2
Q ss_pred --CccEEecccccH-HHHHHHhc
Q 028264 150 --KIKYIGLSEACA-ATIRRAHA 169 (211)
Q Consensus 150 --~i~~iGvs~~~~-~~l~~~~~ 169 (211)
.-+.|-||+... ..+.++.+
T Consensus 185 ~~~~r~itvST~G~~~~i~~l~~ 207 (342)
T PRK14465 185 NLGAKRITISTSGVVNGIRRFIE 207 (342)
T ss_pred cCCCCeEEEeCCCchHHHHHHHh
Confidence 345788887554 56767664
No 221
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=25.08 E-value=3.4e+02 Score=21.32 Aligned_cols=121 Identities=17% Similarity=0.032 Sum_probs=68.3
Q ss_pred CChHHHHHHHHHHHHcCCCeeeCcCCcCCCchHHHH-HHHHhCCCCCCeEEEeccCCcCCCCCCCCCCHHHHHHHHHHHh
Q 028264 35 EPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILV-GKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASL 113 (211)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~~e~~l-g~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL 113 (211)
.++++-.+++..+++.|..++|.=-... .+... -...+ ..+.+++++..-.... .+.+.+.+.+++..
T Consensus 72 ~~~~~~~~ll~~~~~~~~d~iDiE~~~~---~~~~~~~~~~~-~~~~~iI~S~H~f~~t-------p~~~~l~~~~~~~~ 140 (224)
T PF01487_consen 72 GSEEEYLELLERAIRLGPDYIDIELDLF---PDDLKSRLAAR-KGGTKIILSYHDFEKT-------PSWEELIELLEEMQ 140 (224)
T ss_dssp S-HHHHHHHHHHHHHHTSSEEEEEGGCC---HHHHHHHHHHH-HTTSEEEEEEEESS----------THHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEcccc---hhHHHHHHHHh-hCCCeEEEEeccCCCC-------CCHHHHHHHHHHHH
Confidence 4678889999999999999999765422 22211 11222 3677788888743322 23445555555444
Q ss_pred hHcCCCccceEeecCCC-CCCCHHHHHHHHHHHHHcCCccEEecccccHHHHHHHhcc
Q 028264 114 KRLDIDCIDLYYQHRVD-TKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV 170 (211)
Q Consensus 114 ~~Lg~~~lDl~~lh~~~-~~~~~~~~~~~l~~l~~~G~i~~iGvs~~~~~~l~~~~~~ 170 (211)
.+|. |++=+-... ...+...+++...++.+.-...-|+++--....+.+++..
T Consensus 141 -~~ga---divKia~~~~~~~D~~~l~~~~~~~~~~~~~p~i~~~MG~~G~~SRi~~~ 194 (224)
T PF01487_consen 141 -ELGA---DIVKIAVMANSPEDVLRLLRFTKEFREEPDIPVIAISMGELGRISRILNP 194 (224)
T ss_dssp -HTT----SEEEEEEE-SSHHHHHHHHHHHHHHHHHTSSEEEEEEETGGGHHHHHCHH
T ss_pred -hcCC---CeEEEEeccCCHHHHHHHHHHHHHHhhccCCcEEEEEcCCCchhHHHHHh
Confidence 6675 455444432 2234455677777777654455566655445555566544
No 222
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=24.96 E-value=3e+02 Score=20.54 Aligned_cols=75 Identities=13% Similarity=0.018 Sum_probs=56.2
Q ss_pred CCHHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCc-cEEecccccHHHHHHHhccCCeeEE
Q 028264 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKI-KYIGLSEACAATIRRAHAVHPITAV 176 (211)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i-~~iGvs~~~~~~l~~~~~~~~~~~~ 176 (211)
...-.+++.+.+-|+..|.+.+|+=. +. +...++.+.-....+.+.+|.. +.|-+|......-..+-+...+.+.
T Consensus 8 haG~~lK~~l~~~L~~~g~eV~D~G~-~~-~~~~dYpd~a~~va~~V~~~~~~~GIliCGtGiG~siaANK~~GIraa 83 (143)
T TIGR01120 8 HAGFILKEEIKAFLVERGVKVIDKGT-WS-SERTDYPHYAKQVALAVAGGEVDGGILICGTGIGMSIAANKFAGIRAA 83 (143)
T ss_pred cchHHHHHHHHHHHHHCCCEEEEeCC-CC-CCCCCHHHHHHHHHHHHHCCCCceEEEEcCCcHHHHHHHhcCCCeEEE
Confidence 45678999999999999988888753 22 2336777888888888888887 7788998887766666665555543
No 223
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=24.65 E-value=3.8e+02 Score=21.67 Aligned_cols=87 Identities=13% Similarity=0.035 Sum_probs=48.0
Q ss_pred HHHHhhHcCCCccceEeecCCCCCCCH-HHHHHHHHHHHHcCCccEEeccc-ccHHHHHHHhccCCeeEEccccCccccC
Q 028264 109 CEASLKRLDIDCIDLYYQHRVDTKIPI-EVTIGELKKLVEEGKIKYIGLSE-ACAATIRRAHAVHPITAVQLEWSLWSRD 186 (211)
Q Consensus 109 ~~~sL~~Lg~~~lDl~~lh~~~~~~~~-~~~~~~l~~l~~~G~i~~iGvs~-~~~~~l~~~~~~~~~~~~q~~~~~~~~~ 186 (211)
+-+.++..|. |.+.+|..+..-.. .--++.+.++++.-.+.-|.... .+++.+.++++....+.+.+---+....
T Consensus 160 ~~~~l~~~G~---~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~ 236 (254)
T TIGR00735 160 WAKEVEKLGA---GEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYRE 236 (254)
T ss_pred HHHHHHHcCC---CEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCC
Confidence 3344456664 66777765442111 11245555666554555555554 5678888888876566655533332222
Q ss_pred -chhhHHHHHHhh
Q 028264 187 -VEAEIVPTCSDC 198 (211)
Q Consensus 187 -~~~~l~~~~~~~ 198 (211)
...++.+.|+++
T Consensus 237 ~~~~~~~~~~~~~ 249 (254)
T TIGR00735 237 ITIGEVKEYLAER 249 (254)
T ss_pred CCHHHHHHHHHHC
Confidence 224677888876
No 224
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=24.61 E-value=3e+02 Score=20.49 Aligned_cols=74 Identities=11% Similarity=0.000 Sum_probs=54.8
Q ss_pred CCHHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCc-cEEecccccHHHHHHHhccCCeeEEc
Q 028264 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKI-KYIGLSEACAATIRRAHAVHPITAVQ 177 (211)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i-~~iGvs~~~~~~l~~~~~~~~~~~~q 177 (211)
+..-.+++.+.+-|+..|-+-+|+= ++...++.+....+.+.+.+|.. +.|-+|......-..+-+...+.+.+
T Consensus 9 h~G~~lK~~i~~~L~~~G~eV~D~G----~~~~~dYpd~a~~va~~V~~~e~~~GIliCGtGiG~siaANK~~GIRAA~ 83 (141)
T TIGR01118 9 LAGKRLKDVIKNFLVDNGFEVIDVT----EGDGQDFVDVTLAVASEVQKDEQNLGIVIDAYGAGSFMVATKIKGMIAAE 83 (141)
T ss_pred cchHHHHHHHHHHHHHCCCEEEEcC----CCCCCCcHHHHHHHHHHHHcCCCceEEEEcCCCHhHhhhhhcCCCeEEEE
Confidence 4567899999999999998888874 23346777888888888888888 78889988776555555544454433
No 225
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=24.58 E-value=1.7e+02 Score=23.01 Aligned_cols=46 Identities=15% Similarity=0.143 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCcc
Q 028264 102 PAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIK 152 (211)
Q Consensus 102 ~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~ 152 (211)
.+...+.+.+.+++||+. .|.+. ........+-+.++.|.+.|.+.
T Consensus 67 ~~~~~~~~~~~~~~L~i~-~d~~~----~es~~~~~~~~~i~~L~~~g~~~ 112 (212)
T cd00671 67 VEESIKADLETYGRLDVR-FDVWF----GESSYLGLMGKVVELLEELGLLY 112 (212)
T ss_pred HHHHHHHHHHHHHHhCCc-Cceec----chhhhhhHHHHHHHHHHHCCCEE
Confidence 677888899999999998 58754 12222556778888899988863
No 226
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=24.52 E-value=2.7e+02 Score=19.88 Aligned_cols=64 Identities=11% Similarity=0.138 Sum_probs=40.5
Q ss_pred CCCCeEEEeccCCcCCCCCCCCCCHHHHHHHHHHHhhHcC--CCccceEeecCCCCC-CCHHHHHHHHHHHHHc
Q 028264 78 MRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLD--IDCIDLYYQHRVDTK-IPIEVTIGELKKLVEE 148 (211)
Q Consensus 78 ~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg--~~~lDl~~lh~~~~~-~~~~~~~~~l~~l~~~ 148 (211)
+|=.+.|+-|.+... ..+..+++.++++++... ....|++++..+... .+..++.+.|.+|.+.
T Consensus 44 ~R~G~~VsKK~~~~A-------V~RNRiKR~lRE~~R~~~~~l~~~DiVvi~r~~~~~~~~~~l~~~l~~ll~k 110 (120)
T PRK04390 44 PRLGLVVGKKTAKRA-------VERNYMKRVIREWFRLNQHRLPPVDFVVRVQRKFDRATAKQAVAELAQLMAK 110 (120)
T ss_pred ceEEEEEecccCcch-------hhhhHHHHHHHHHHHhccccCCCceEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 455567777754323 457777777777776443 234699999988543 4566666666666543
No 227
>PF11372 DUF3173: Domain of unknown function (DUF3173); InterPro: IPR021512 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=24.41 E-value=44 Score=20.97 Aligned_cols=19 Identities=11% Similarity=0.380 Sum_probs=12.6
Q ss_pred HHHHHHHHH----HHHcCCCeee
Q 028264 38 PDMIALIHH----AINSGITLLD 56 (211)
Q Consensus 38 ~~~~~~l~~----A~~~Gin~~D 56 (211)
.++.++++. +++.|+.++|
T Consensus 17 ~tA~~IIrqAK~~lV~~G~~~Y~ 39 (59)
T PF11372_consen 17 STARDIIRQAKALLVQKGFSFYN 39 (59)
T ss_pred HHHHHHHHHHHHHHHHcCCCccc
Confidence 445555554 4788999886
No 228
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=24.40 E-value=78 Score=25.99 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.3
Q ss_pred cCCCCCChHHHHHHHHHHHHcCCC
Q 028264 30 LYGPPEPEPDMIALIHHAINSGIT 53 (211)
Q Consensus 30 ~~~~~~~~~~~~~~l~~A~~~Gin 53 (211)
.|..+.+++++.+++..|+++||-
T Consensus 178 r~k~dlt~eea~~Lv~eAi~AGi~ 201 (271)
T KOG0173|consen 178 RWKPDLTKEEAIKLVCEAIAAGIF 201 (271)
T ss_pred hcCcccCHHHHHHHHHHHHHhhhc
Confidence 477788999999999999999973
No 229
>COG0757 AroQ 3-dehydroquinate dehydratase II [Amino acid transport and metabolism]
Probab=24.26 E-value=3.1e+02 Score=20.51 Aligned_cols=93 Identities=13% Similarity=0.091 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcC--CccEEecccccHHHHHHHhccCCeeEE
Q 028264 99 RGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEG--KIKYIGLSEACAATIRRAHAVHPITAV 176 (211)
Q Consensus 99 ~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G--~i~~iGvs~~~~~~l~~~~~~~~~~~~ 176 (211)
..+.+++.+.+++.-+.+|++ ++.+|-.. -.++.+.+.+...++ .|-.=|.-++++-.|+.++....+-++
T Consensus 24 ~~Tl~di~~~~~~~a~~~g~~-v~~~QSN~------Eg~Lid~Ihea~~~~~~IvINpga~THTSvAlrDAi~av~iP~v 96 (146)
T COG0757 24 STTLEDIEADLEEEAAKLGVE-VEFRQSNH------EGELIDWIHEARGKAGDIVINPGAYTHTSVALRDAIAAVSIPVV 96 (146)
T ss_pred cccHHHHHHHHHHHHHHcCce-EEEEecCc------hHHHHHHHHHhhccCCeEEEcCccchhhHHHHHHHHHhcCCCEE
Confidence 468999999999999999974 55554321 246788888888775 233334445677778888877655566
Q ss_pred ccccCccccC-ch---hhHHHHHHhh
Q 028264 177 QLEWSLWSRD-VE---AEIVPTCSDC 198 (211)
Q Consensus 177 q~~~~~~~~~-~~---~~l~~~~~~~ 198 (211)
.+..|=.+.. +- ..+.+.|.--
T Consensus 97 EVHlSNihaRE~FRhhS~~s~~a~Gv 122 (146)
T COG0757 97 EVHLSNIHAREEFRHHSYTSPVAKGV 122 (146)
T ss_pred EEEecCchhcccccccccccchhcee
Confidence 6666654443 11 1455666544
No 230
>PF09639 YjcQ: YjcQ protein; InterPro: IPR018597 YjcQ is a protein of approx. 100 residues containing four alpha helices and three beta strands. It is found in bacteria and also in the Lactococcus phage Tuc2009. In bacteria it appears to be under the regulation of SigD RNA polymerase which is responsible for the expression of many genes encoding cell-surface proteins related to flagellar assembly, motility, chemotaxis and autolysis in the late exponential growth phase. The exact function of YjcQ is unknown []. However, it is thought to be the major head protein in viruses [] and is found in prophage in bacteria. ; PDB: 2HGC_A.
Probab=24.22 E-value=58 Score=21.96 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHcCCccEEecccc
Q 028264 136 EVTIGELKKLVEEGKIKYIGLSEA 159 (211)
Q Consensus 136 ~~~~~~l~~l~~~G~i~~iGvs~~ 159 (211)
.....+|..|+++|.|..+-+.+.
T Consensus 25 ~~~~~il~~L~d~GyI~G~~~~~~ 48 (88)
T PF09639_consen 25 SYWSDILRMLQDEGYIKGVSVVRY 48 (88)
T ss_dssp HHHHHHHHHHHHHTSEE--EESSS
T ss_pred HHHHHHHHHHHHCCCccceEEEec
Confidence 678899999999999987777655
No 231
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=23.99 E-value=4.1e+02 Score=21.82 Aligned_cols=95 Identities=12% Similarity=0.071 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCccEEecccccHHHHHHHhcc--CCeeEEcc
Q 028264 101 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV--HPITAVQL 178 (211)
Q Consensus 101 ~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~iGvs~~~~~~l~~~~~~--~~~~~~q~ 178 (211)
+.+.+.+..++.. .-|.+.+|+-.= +......+.+...++.+++.-.+ -|.+-+++++.++++++. ..+-++-+
T Consensus 23 d~~~i~~~A~~~~-~~GAdiIDVg~~--~~~~eE~~r~~~~v~~l~~~~~~-plsIDT~~~~v~eaaL~~~~G~~iINsI 98 (261)
T PRK07535 23 DAAFIQKLALKQA-EAGADYLDVNAG--TAVEEEPETMEWLVETVQEVVDV-PLCIDSPNPAAIEAGLKVAKGPPLINSV 98 (261)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECCC--CCchhHHHHHHHHHHHHHHhCCC-CEEEeCCCHHHHHHHHHhCCCCCEEEeC
Confidence 4555555554443 568899998642 22222344555666666554222 378888999999999987 55544433
Q ss_pred ccCccccCchhhHHHHHHhh-cCch
Q 028264 179 EWSLWSRDVEAEIVPTCSDC-LGNL 202 (211)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~~~-~~~i 202 (211)
.. .... .+.+++.++++ ..++
T Consensus 99 s~--~~~~-~~~~~~l~~~~g~~vv 120 (261)
T PRK07535 99 SA--EGEK-LEVVLPLVKKYNAPVV 120 (261)
T ss_pred CC--CCcc-CHHHHHHHHHhCCCEE
Confidence 32 2111 24788888887 5555
No 232
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=23.96 E-value=5.2e+02 Score=23.15 Aligned_cols=110 Identities=11% Similarity=0.039 Sum_probs=60.1
Q ss_pred CcCCcCCCchHHHHHHHHhC----CC-CCCeEEEeccCCcCCCCCCCCCCHHHHHHHHHHHhhHcCCC----ccceEeec
Q 028264 57 TSDIYGPYTNEILVGKALKG----GM-RERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDID----CIDLYYQH 127 (211)
Q Consensus 57 tA~~Yg~g~~e~~lg~~l~~----~~-R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~----~lDl~~lh 127 (211)
..-.|| .|+-|-+++++ .+ .+=++|.|-..+.. .-+++..-+++.-+++.-+ .+.++.++
T Consensus 67 ~dvVfG---G~~kL~~aI~~~~~~~~~p~~I~V~ttC~~ei--------IGDDi~~v~~~~~~~~~~e~~~~~~~vv~v~ 135 (457)
T TIGR02932 67 ESAVFG---GAKRIEEGVLTLARRYPNLRVIPIITTCSTET--------IGDDIEGSIRKVNRALKKEFPDRKIKLVPVH 135 (457)
T ss_pred CceEEC---cHHHHHHHHHHHHHhCCCCCEEEEECCchHHh--------hcCCHHHHHHHHHhhhhhhcCCCCCeEEEee
Confidence 334677 67777788877 22 23366666543222 2344444444432222111 36789999
Q ss_pred CCCCCCC----HHHHHHHHHHHH-H-----cCCccEEeccc--ccHHHHHHHhccCCeeEEc
Q 028264 128 RVDTKIP----IEVTIGELKKLV-E-----EGKIKYIGLSE--ACAATIRRAHAVHPITAVQ 177 (211)
Q Consensus 128 ~~~~~~~----~~~~~~~l~~l~-~-----~G~i~~iGvs~--~~~~~l~~~~~~~~~~~~q 177 (211)
.|+..-+ .+.+++++.+.. + +++|.=||-.+ .+.++|+++++...+.++-
T Consensus 136 tpgF~gs~~~G~~~a~~ali~~~~~~~~~~~~~VNii~~~~~~gD~~eik~lL~~~Gl~vn~ 197 (457)
T TIGR02932 136 TPSFKGSQVTGYAECVKSVIKTIAAKKGEPSGKLNVFPGWVNPGDVVLLKHYFSEMGVDANI 197 (457)
T ss_pred CCCCcCcHHHHHHHHHHHHHHHHhhccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCEEE
Confidence 9876643 344554444332 1 35677776433 3455788888886555554
No 233
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=23.78 E-value=4.6e+02 Score=22.37 Aligned_cols=96 Identities=10% Similarity=-0.043 Sum_probs=53.2
Q ss_pred CCCeEEEeccCCcCCCCCCCCCCHHHHHHHHHHHhhHcCCCccceEeecCCCCC-------------CCHHHHHHHHHHH
Q 028264 79 RERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK-------------IPIEVTIGELKKL 145 (211)
Q Consensus 79 R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~-------------~~~~~~~~~l~~l 145 (211)
..++.|..|+++... .....+.+... .+-+.|+..| .+|++.+|..... ....-.|+...++
T Consensus 206 g~~~~v~iRl~~~~~--~~~G~~~~e~~-~~~~~l~~~G--~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 280 (343)
T cd04734 206 GPDFIVGIRISGDED--TEGGLSPDEAL-EIAARLAAEG--LIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARI 280 (343)
T ss_pred CCCCeEEEEeehhhc--cCCCCCHHHHH-HHHHHHHhcC--CCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHH
Confidence 467889999875431 01123444443 3444555666 2454555432110 0111135555666
Q ss_pred HHcCCccEEeccc-ccHHHHHHHhccCCeeEEccc
Q 028264 146 VEEGKIKYIGLSE-ACAATIRRAHAVHPITAVQLE 179 (211)
Q Consensus 146 ~~~G~i~~iGvs~-~~~~~l~~~~~~~~~~~~q~~ 179 (211)
++.=.+--|++.+ .+++.++++++....+.+.+-
T Consensus 281 k~~~~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~g 315 (343)
T cd04734 281 KQAVDLPVFHAGRIRDPAEAEQALAAGHADMVGMT 315 (343)
T ss_pred HHHcCCCEEeeCCCCCHHHHHHHHHcCCCCeeeec
Confidence 6554566677776 578999999988777777663
No 234
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.76 E-value=3.3e+02 Score=23.48 Aligned_cols=71 Identities=11% Similarity=0.090 Sum_probs=46.2
Q ss_pred CCCCHHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHH-cCC---ccEEeccccc-HHHHHHHhcc
Q 028264 98 IRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVE-EGK---IKYIGLSEAC-AATIRRAHAV 170 (211)
Q Consensus 98 ~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~-~G~---i~~iGvs~~~-~~~l~~~~~~ 170 (211)
...+.+.|.+++....+..+++++ .+.-.=++...++++.+++..+.+ .|. .+.|-||+.. ...+.++...
T Consensus 129 r~lt~~EI~~qv~~~~~~~~i~~I--vfmG~GEPl~n~~~vi~~l~~l~~~~gl~~s~r~itVsTnGl~~~i~~l~~~ 204 (349)
T PRK14463 129 RNLTTAEIVNQVCAVKRDVPVRNI--VFMGMGEPLANLDNVIPALQILTDPDGLQFSTRKVTVSTSGLVPEMEELGRE 204 (349)
T ss_pred CCCCHHHHHHHHHHHHhcCCccEE--EEecCCcchhcHHHHHHHHHHhhcccccCcCCceEEEECCCchHHHHHHhhc
Confidence 456899999998887766554433 333333455567889999998875 565 3667776643 3456666543
No 235
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=23.67 E-value=1.4e+02 Score=26.20 Aligned_cols=60 Identities=15% Similarity=0.214 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHcC-CccEEeccc---ccHHHHHHHhcc-CCeeEEc---cccCccccCchhhHHHHHHhh
Q 028264 137 VTIGELKKLVEEG-KIKYIGLSE---ACAATIRRAHAV-HPITAVQ---LEWSLWSRDVEAEIVPTCSDC 198 (211)
Q Consensus 137 ~~~~~l~~l~~~G-~i~~iGvs~---~~~~~l~~~~~~-~~~~~~q---~~~~~~~~~~~~~l~~~~~~~ 198 (211)
.+++.+..|.++| .|.++.+-+ .+.++++++++. ..+.++| ++.-.+.+ -.++.+.|+++
T Consensus 103 aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQp--I~ei~~i~k~~ 170 (386)
T COG1104 103 AVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQP--IAEIGEICKER 170 (386)
T ss_pred HHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCCceEEEEEecccCeeeccc--HHHHHHHHHHc
Confidence 3455555554445 455555543 345666666543 2222222 23323322 24666666665
No 236
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=23.57 E-value=4.1e+02 Score=21.67 Aligned_cols=88 Identities=8% Similarity=-0.049 Sum_probs=51.4
Q ss_pred CChHHHHHHHHHHHHcCCCeeeC----cCCcCCCchHHHHHHHHhCCCCCCeEEEeccCCcCCCCCCCCCCHHHHHHHHH
Q 028264 35 EPEPDMIALIHHAINSGITLLDT----SDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCE 110 (211)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gin~~Dt----A~~Yg~g~~e~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~ 110 (211)
.++++.++-++.+-+.|+.+|=- --.|+++..++.+.++= +..-+-+-|++-.-+... .-....|++.++
T Consensus 57 i~kd~V~ekid~y~e~~i~v~pGGtlfe~a~~~~kvdeyl~e~~-~lGfe~iEIS~G~i~m~~-----eek~~lIe~a~d 130 (258)
T COG1809 57 IDKDQVKEKIDMYKENDIYVFPGGTLFEIAYSQDKVDEYLNEAK-ELGFEAIEISNGTIPMST-----EEKCRLIERAVD 130 (258)
T ss_pred ccHHHHHHHHHHHHHcCceecCCceEEEeehhcccHHHHHHHHH-HcCccEEEecCCeeecch-----HHHHHHHHHHHh
Confidence 57888999999999987754421 12356667787776653 334566667765432220 112445667777
Q ss_pred HH---hhHcCCCccceEeecC
Q 028264 111 AS---LKRLDIDCIDLYYQHR 128 (211)
Q Consensus 111 ~s---L~~Lg~~~lDl~~lh~ 128 (211)
+- |..+|....|..-...
T Consensus 131 ~Gf~vlsEvGkk~~e~~~~l~ 151 (258)
T COG1809 131 EGFMVLSEVGKKDPESDSALS 151 (258)
T ss_pred cccEEehhhcccCcchhhhcC
Confidence 63 4555655544443333
No 237
>cd00338 Ser_Recombinase Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are protei
Probab=23.46 E-value=1.7e+02 Score=20.67 Aligned_cols=51 Identities=16% Similarity=0.193 Sum_probs=33.0
Q ss_pred HHHHHHHhhHcCCCccceEeecCCCCCC-CHHHHHHHHHHHHHcCCccEEecc
Q 028264 106 RACCEASLKRLDIDCIDLYYQHRVDTKI-PIEVTIGELKKLVEEGKIKYIGLS 157 (211)
Q Consensus 106 ~~~~~~sL~~Lg~~~lDl~~lh~~~~~~-~~~~~~~~l~~l~~~G~i~~iGvs 157 (211)
+..+++.|+.+.....|.+++..+++.. +..+....++.|.+.| |+-+-++
T Consensus 51 R~~~~~ll~~~~~~~~d~ivv~~~~Rl~R~~~~~~~~~~~l~~~g-i~l~~~~ 102 (137)
T cd00338 51 RPGLQRLLADVKAGKIDVVLVEKLDRLSRNLVDLLELLELLEAHG-VRVVTAD 102 (137)
T ss_pred CHHHHHHHHHHHcCCCCEEEEEecchhhCCHHHHHHHHHHHHHCC-CEEEEec
Confidence 3445666666655678999999887653 4457777777777765 4444443
No 238
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=23.44 E-value=5.6e+02 Score=23.21 Aligned_cols=149 Identities=9% Similarity=0.025 Sum_probs=79.9
Q ss_pred ChHHHHHHHHHHHHcCCCeeeCcCCcCCCchHHHHHHHHhCCCC-CCeEEEeccCCcCCCCCCCCCCHHHHHHHHHHHhh
Q 028264 36 PEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMR-ERVELATKFGISFADGGKIRGDPAYVRACCEASLK 114 (211)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~~e~~lg~~l~~~~R-~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~ 114 (211)
+++-....++.|.+.|+..|=....-.+-++-+..-++.++... -+..|+-... +.++.+...+.+++. .
T Consensus 103 pddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~s--------p~~t~~y~~~~a~~l-~ 173 (468)
T PRK12581 103 ADDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYTTS--------PVHTLNYYLSLVKEL-V 173 (468)
T ss_pred cchHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEEEeC--------CcCcHHHHHHHHHHH-H
Confidence 45667888999999999877666655532333333344444111 1122333222 124667777766664 5
Q ss_pred HcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCccEEecccccH-----HHHHHHhccCCeeEEccccCccccC---
Q 028264 115 RLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACA-----ATIRRAHAVHPITAVQLEWSLWSRD--- 186 (211)
Q Consensus 115 ~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~iGvs~~~~-----~~l~~~~~~~~~~~~q~~~~~~~~~--- 186 (211)
.+|. |.+.+-..-....+.++.+.+..+++...+ -||+=.|+- ....++++.+ .+.+....+++-..
T Consensus 174 ~~Ga---d~I~IkDtaG~l~P~~v~~Lv~alk~~~~~-pi~~H~Hnt~GlA~An~laAieAG-ad~vD~ai~g~g~gagN 248 (468)
T PRK12581 174 EMGA---DSICIKDMAGILTPKAAKELVSGIKAMTNL-PLIVHTHATSGISQMTYLAAVEAG-ADRIDTALSPFSEGTSQ 248 (468)
T ss_pred HcCC---CEEEECCCCCCcCHHHHHHHHHHHHhccCC-eEEEEeCCCCccHHHHHHHHHHcC-CCEEEeeccccCCCcCC
Confidence 6786 455555554445566777777777665433 477765542 2233333332 23333444433332
Q ss_pred -chhhHHHHHHhh
Q 028264 187 -VEAEIVPTCSDC 198 (211)
Q Consensus 187 -~~~~l~~~~~~~ 198 (211)
+.+.++.+++..
T Consensus 249 ~~tE~lv~~L~~~ 261 (468)
T PRK12581 249 PATESMYLALKEA 261 (468)
T ss_pred hhHHHHHHHHHhc
Confidence 334566666653
No 239
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=23.34 E-value=4e+02 Score=21.54 Aligned_cols=126 Identities=14% Similarity=0.112 Sum_probs=73.3
Q ss_pred HHHHHHHHhC--CCCC--CeEEEeccCCcCCCCCCCCCCHHHHHHHHHHHhhHcCCCccceEeecCCCCC--CCHHHHHH
Q 028264 67 EILVGKALKG--GMRE--RVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK--IPIEVTIG 140 (211)
Q Consensus 67 e~~lg~~l~~--~~R~--~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~--~~~~~~~~ 140 (211)
+.++.++++. ..+. ...++..+.+.. .....+...+.+.+++.+++.- -+.+--.+.. .+.+.+..
T Consensus 69 ~~v~~~a~~~~~~~~~~~~~~l~iNis~~~-------l~~~~~~~~l~~~l~~~~~~~~-~l~lEitE~~~~~~~~~~~~ 140 (256)
T COG2200 69 RWVLEEACRQLRTWPRAGPLRLAVNLSPVQ-------LRSPGLVDLLLRLLARLGLPPH-RLVLEITESALIDDLDTALA 140 (256)
T ss_pred HHHHHHHHHHHHhhhhcCCceEEEEcCHHH-------hCCchHHHHHHHHHHHhCCCcc-eEEEEEeCchhhcCHHHHHH
Confidence 4445555544 1222 366777766532 3345566677788888876532 2333222222 23457888
Q ss_pred HHHHHHHcCCccEEecccccHH--HHHHHhccCCeeEEccccCccccC--------chhhHHHHHHhh-cCchh
Q 028264 141 ELKKLVEEGKIKYIGLSEACAA--TIRRAHAVHPITAVQLEWSLWSRD--------VEAEIVPTCSDC-LGNLA 203 (211)
Q Consensus 141 ~l~~l~~~G~i~~iGvs~~~~~--~l~~~~~~~~~~~~q~~~~~~~~~--------~~~~l~~~~~~~-~~~i~ 203 (211)
.+.+|++.| + .|.+..|... .+.. +...+|+++-+.-++...- ....++..|++. +.+++
T Consensus 141 ~l~~L~~~G-~-~ialDDFGtG~ssl~~-L~~l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l~~~vva 211 (256)
T COG2200 141 LLRQLRELG-V-RIALDDFGTGYSSLSY-LKRLPPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLGLTVVA 211 (256)
T ss_pred HHHHHHHCC-C-eEEEECCCCCHHHHHH-HhhCCCCeEEECHHHHhhcccCcchHHHHHHHHHHHHHCCCEEEE
Confidence 999999999 3 3667666532 2333 3347778887776654421 234688888887 66654
No 240
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=23.14 E-value=5.8e+02 Score=23.26 Aligned_cols=100 Identities=11% Similarity=0.089 Sum_probs=51.7
Q ss_pred hHHHHHHHHhC----CCCCCeEEEeccCCcCCCCCCCCCCHHHHHHHHHHHhhHcCCCccceEeecCCCCCCC-HHHHHH
Q 028264 66 NEILVGKALKG----GMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIP-IEVTIG 140 (211)
Q Consensus 66 ~e~~lg~~l~~----~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~-~~~~~~ 140 (211)
.++.+-+++++ .+.+=++|.|-..+.. .+-+.+.+.+.++ +.+ .++++.+|.|..... ......
T Consensus 69 g~~kL~~~I~~~~~~~~P~~I~V~tTC~~ei-----IGDDi~~v~~~~~---~~~---~~pVi~v~t~~f~g~~~~g~~~ 137 (513)
T CHL00076 69 SQEKVVDNITRKDKEERPDLIVLTPTCTSSI-----LQEDLQNFVDRAS---IES---DSDVILADVNHYRVNELQAADR 137 (513)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEECCCCchhh-----hhcCHHHHHHHhh---ccc---CCCEEEeCCCCCcccHHHHHHH
Confidence 55556666655 2344455555443221 1123333333222 223 368999999966532 212222
Q ss_pred HHHHHH------------------HcCCccEEeccc------ccHHHHHHHhccCCeeEE
Q 028264 141 ELKKLV------------------EEGKIKYIGLSE------ACAATIRRAHAVHPITAV 176 (211)
Q Consensus 141 ~l~~l~------------------~~G~i~~iGvs~------~~~~~l~~~~~~~~~~~~ 176 (211)
+++.++ ..++|.=||.++ .+..+|.++++...+.++
T Consensus 138 ~l~~lv~~~~~~~~~~~~~~~~~~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~vn 197 (513)
T CHL00076 138 TLEQIVRFYLEKARKQGTLDQSKTDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEIN 197 (513)
T ss_pred HHHHHHHHHhhcccccccccccCCCCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCeEE
Confidence 233222 235688888764 355778888887555554
No 241
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=23.13 E-value=4.8e+02 Score=22.30 Aligned_cols=63 Identities=14% Similarity=0.145 Sum_probs=40.0
Q ss_pred HHHHHhhHcCCCccceEeecC-------CCCCCCHHHHHHHHHHHHHcCC--ccE---EecccccHHHHHHHhcc
Q 028264 108 CCEASLKRLDIDCIDLYYQHR-------VDTKIPIEVTIGELKKLVEEGK--IKY---IGLSEACAATIRRAHAV 170 (211)
Q Consensus 108 ~~~~sL~~Lg~~~lDl~~lh~-------~~~~~~~~~~~~~l~~l~~~G~--i~~---iGvs~~~~~~l~~~~~~ 170 (211)
..-+.|+++|++++.+=+=.. .....+.+++.++++.+++.|. |.. +|+.+.+.+.+.+.++.
T Consensus 101 e~l~~l~~~Gv~risiGvqS~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~~~~~~~l~~ 175 (360)
T TIGR00539 101 EWCKGLKGAGINRLSLGVQSFRDDKLLFLGRQHSAKNIAPAIETALKSGIENISLDLMYGLPLQTLNSLKEELKL 175 (360)
T ss_pred HHHHHHHHcCCCEEEEecccCChHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCCCCHHHHHHHHHH
Confidence 344556667777766543322 2233457889999999999985 332 66667777766555543
No 242
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=23.04 E-value=3.3e+02 Score=20.34 Aligned_cols=64 Identities=11% Similarity=0.065 Sum_probs=41.9
Q ss_pred CCCCeEEEeccCCcCCCCCCCCCCHHHHHHHHHHHhhHcC--CCccceEeecCCCC-CCCHHHHHHHHHHHHHc
Q 028264 78 MRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLD--IDCIDLYYQHRVDT-KIPIEVTIGELKKLVEE 148 (211)
Q Consensus 78 ~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg--~~~lDl~~lh~~~~-~~~~~~~~~~l~~l~~~ 148 (211)
+|=-+.|+-|++... ..+..+++.++++++.+. ....|++++..+.. ..++.++.+.|..+.+.
T Consensus 48 ~RlG~sVSKKvg~~A-------V~RNRiKR~lRE~fR~~~~~l~~~DiVviar~~~~~~~~~~l~~~l~~LL~k 114 (145)
T PRK04820 48 PRLGLAVSRKVDTRA-------VGRNRIKRVLREAMRQLLPELAPGDYVVVARSAAAKASNPQLRDAFLRLLRR 114 (145)
T ss_pred cEEEEEEeccccCcc-------hhHHHHHHHHHHHHHHhhhccCCCCEEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 455566776764333 456777777777776542 23449888888754 35678888888887765
No 243
>PRK01732 rnpA ribonuclease P; Reviewed
Probab=22.75 E-value=2.8e+02 Score=19.57 Aligned_cols=31 Identities=16% Similarity=0.022 Sum_probs=16.6
Q ss_pred CCeEEEeccCCcCCCCCCCCCCHHHHHHHHHHHhhHcC
Q 028264 80 ERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLD 117 (211)
Q Consensus 80 ~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg 117 (211)
-+++|..|-+... .+.+++.+++...|++++
T Consensus 83 ~diVviar~~~~~-------~~~~~l~~~l~~ll~k~~ 113 (114)
T PRK01732 83 MDFVVIAKKGVAD-------LDNRELFELLEKLWRRHS 113 (114)
T ss_pred CeEEEEeCCCccc-------CCHHHHHHHHHHHHHHhh
Confidence 3555555544322 456666666666666543
No 244
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=22.63 E-value=4.8e+02 Score=24.01 Aligned_cols=62 Identities=18% Similarity=0.135 Sum_probs=44.1
Q ss_pred CCCCHHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCccEEecccccHHHHHHH
Q 028264 98 IRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRA 167 (211)
Q Consensus 98 ~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~iGvs~~~~~~l~~~ 167 (211)
+........+++.+.|+-||.++ |-.. -....++...+.+++|+++|++ |. |.-+.+++++.
T Consensus 55 p~R~~~e~~~~I~~dL~WLGl~w-D~~~----~qSdr~~~y~~~a~~Li~~G~A-Y~--C~cs~eel~~~ 116 (523)
T PLN03233 55 PSKEKAEFEESIIEDLGKIEIKP-DSVS----FTSDYFEPIRCYAIILIEEGLA-YM--DDTPQEEMKKE 116 (523)
T ss_pred CCccchHHHHHHHHHHHHhCCCC-CCCc----cccccHHHHHHHHHHHHHcCCe-Ee--cCCCHHHHHHH
Confidence 34567788889999999999985 5211 1234467889999999999996 44 44446666655
No 245
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=22.56 E-value=4.6e+02 Score=21.94 Aligned_cols=70 Identities=20% Similarity=0.135 Sum_probs=50.2
Q ss_pred CCCHHHHHHHHHHHhhHcCCC--------------------------ccceEeecCCCCCC---CHHHHHHHHHHHHHcC
Q 028264 99 RGDPAYVRACCEASLKRLDID--------------------------CIDLYYQHRVDTKI---PIEVTIGELKKLVEEG 149 (211)
Q Consensus 99 ~~~~~~i~~~~~~sL~~Lg~~--------------------------~lDl~~lh~~~~~~---~~~~~~~~l~~l~~~G 149 (211)
+.....+++.++.-|+++++. .+|++.+..|-..- ..+-+-++..+++++|
T Consensus 101 Gm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~G 180 (300)
T COG4152 101 GMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEG 180 (300)
T ss_pred CCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcC
Confidence 355777777787777777643 35666666653222 2355677888999999
Q ss_pred CccEEecccccHHHHHHHhcc
Q 028264 150 KIKYIGLSEACAATIRRAHAV 170 (211)
Q Consensus 150 ~i~~iGvs~~~~~~l~~~~~~ 170 (211)
.. |=+|+|..++++++.+.
T Consensus 181 at--IifSsH~Me~vEeLCD~ 199 (300)
T COG4152 181 AT--IIFSSHRMEHVEELCDR 199 (300)
T ss_pred CE--EEEecchHHHHHHHhhh
Confidence 85 89999999999999775
No 246
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=22.38 E-value=4.7e+02 Score=21.91 Aligned_cols=94 Identities=14% Similarity=0.032 Sum_probs=58.7
Q ss_pred ChHHHHHHHHHHHHcCCCeeeCcCCcCC-------Cc----hHHHHHHHHhC-------CCCCCeEEEeccCCcCC---C
Q 028264 36 PEPDMIALIHHAINSGITLLDTSDIYGP-------YT----NEILVGKALKG-------GMRERVELATKFGISFA---D 94 (211)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~-------g~----~e~~lg~~l~~-------~~R~~~~i~tK~~~~~~---~ 94 (211)
+++..+++-+..+++|-+.+.|.....+ |. .+++...+++- ..+.+++|+-=+++... +
T Consensus 44 ~Pe~V~~vH~~yl~AGadiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~VaGsiGP~g~~l~~ 123 (304)
T PRK09485 44 NPELIYQVHLDYFRAGADCAITASYQATFQGFAARGLSEAEAEELIRRSVELAKEARDEFWAEKPLVAGSVGPYGAYLAD 123 (304)
T ss_pred ChHHHHHHHHHHHHhCCCEEEeeccccCHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEecCCcccccCC
Confidence 5566688888888999999998865432 22 23333333321 12224777777775431 1
Q ss_pred C--CC--CCCCHHHHHHHHHHHhhHcCCCccceEeecCC
Q 028264 95 G--GK--IRGDPAYVRACCEASLKRLDIDCIDLYYQHRV 129 (211)
Q Consensus 95 ~--~~--~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~ 129 (211)
+ +. ...+.+.+.+...+..+.|--..+|++++--.
T Consensus 124 ~~~y~g~~~~~~~~~~~~~~~q~~~l~~~gvD~i~~ET~ 162 (304)
T PRK09485 124 GSEYRGDYGLSEEELQDFHRPRIEALAEAGADLLACETI 162 (304)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecc
Confidence 1 11 12578889988888888885566999988743
No 247
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.37 E-value=1.8e+02 Score=28.99 Aligned_cols=48 Identities=19% Similarity=0.206 Sum_probs=38.7
Q ss_pred ccceEeecCCCCCCCH---HHHHHHHHHHHHcCCccEEecccccHHHHHHHhc
Q 028264 120 CIDLYYQHRVDTKIPI---EVTIGELKKLVEEGKIKYIGLSEACAATIRRAHA 169 (211)
Q Consensus 120 ~lDl~~lh~~~~~~~~---~~~~~~l~~l~~~G~i~~iGvs~~~~~~l~~~~~ 169 (211)
.+|++++..|....|. +.++++|..+.+.|+ .|||.+|..+....+..
T Consensus 978 ~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~--~i~iisH~~~~~~~~~~ 1028 (1042)
T TIGR00618 978 VLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSK--MIGIISHVPEFRERIPH 1028 (1042)
T ss_pred CCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCC--EEEEEeCcHHHHHhhCC
Confidence 5899999999877664 467899999988775 59999999887776643
No 248
>PRK05339 PEP synthetase regulatory protein; Provisional
Probab=22.35 E-value=4.6e+02 Score=21.83 Aligned_cols=72 Identities=15% Similarity=0.163 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHc--CCCeeeCcCCcCCCchHHHHHHHHhCCC-CCCeEEEeccCCcCCCCCCCCCCHHHHHHHHHHHhh
Q 028264 38 PDMIALIHHAINS--GITLLDTSDIYGPYTNEILVGKALKGGM-RERVELATKFGISFADGGKIRGDPAYVRACCEASLK 114 (211)
Q Consensus 38 ~~~~~~l~~A~~~--Gin~~DtA~~Yg~g~~e~~lg~~l~~~~-R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~ 114 (211)
+.+..+.++|+.+ |+.+.-. -|..=++++.+-+.+.... ...+++.|=. -..+++.+++.++
T Consensus 16 eTAe~v~~A~l~QF~~~~~~~~--~~p~v~~~~~~~~i~~~~~~~~~iV~~Tlv-------------~~elr~~l~~~~~ 80 (269)
T PRK05339 16 ETAETVGRAALSQFPNVEFEEH--RYPFVRTEEKADEVLEEINAERPIVFYTLV-------------DPELREILEERCA 80 (269)
T ss_pred HHHHHHHHHHHHhCCCCCeeEE--EeCCcCCHHHHHHHHHHHHhcCCEEEEeCC-------------CHHHHHHHHHHHH
Confidence 5566666666644 4443211 1221145666666665532 4556666654 4678999999999
Q ss_pred HcCCCccceE
Q 028264 115 RLDIDCIDLY 124 (211)
Q Consensus 115 ~Lg~~~lDl~ 124 (211)
.+|+.++|++
T Consensus 81 ~~~i~~vdll 90 (269)
T PRK05339 81 EFGIPCIDIL 90 (269)
T ss_pred HcCCCEEecc
Confidence 9999999998
No 249
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=22.32 E-value=4.6e+02 Score=21.78 Aligned_cols=104 Identities=12% Similarity=0.145 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHcCCCeeeCcCCcCCCchHHHHHHHHhC-----CCCCCeEEEeccCCcCCCCCCCCCCHHHHH------
Q 028264 38 PDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKG-----GMRERVELATKFGISFADGGKIRGDPAYVR------ 106 (211)
Q Consensus 38 ~~~~~~l~~A~~~Gin~~DtA~~Yg~g~~e~~lg~~l~~-----~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~------ 106 (211)
..+.+.|+..-+.|+.++=.++.-. ++.+.+-+.|++ .+.++++-++-.. .+.+.
T Consensus 27 pga~e~l~~L~~~g~~~iflTNn~~--~s~~~~~~~L~~~~~~~~~~~~i~TS~~at------------~~~l~~~~~~~ 92 (269)
T COG0647 27 PGAAEALKRLKAAGKPVIFLTNNST--RSREVVAARLSSLGGVDVTPDDIVTSGDAT------------ADYLAKQKPGK 92 (269)
T ss_pred chHHHHHHHHHHcCCeEEEEeCCCC--CCHHHHHHHHHhhcCCCCCHHHeecHHHHH------------HHHHHhhCCCC
Confidence 4488999999999999888777655 677766666655 2344444333322 22222
Q ss_pred -------HHHHHHhhHcCCCccc-------eEeecCCCCCCCHHHHHHHHHHHHHcCCccEEecc
Q 028264 107 -------ACCEASLKRLDIDCID-------LYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS 157 (211)
Q Consensus 107 -------~~~~~sL~~Lg~~~lD-------l~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~iGvs 157 (211)
..+.+.|+.+|....+ -+.+...|+...++...+++..+ .+| +++|+..
T Consensus 93 kv~viG~~~l~~~l~~~G~~~~~~~~~~~~d~Vv~g~d~~~~~e~l~~a~~~i-~~g-~~fI~tN 155 (269)
T COG0647 93 KVYVIGEEGLKEELEGAGFELVDEEEPARVDAVVVGLDRTLTYEKLAEALLAI-AAG-APFIATN 155 (269)
T ss_pred EEEEECCcchHHHHHhCCcEEeccCCCCcccEEEEecCCCCCHHHHHHHHHHH-HcC-CcEEEeC
Confidence 2367888888865444 45555566667777755555544 445 8888864
No 250
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=22.25 E-value=4.1e+02 Score=21.58 Aligned_cols=97 Identities=12% Similarity=0.048 Sum_probs=44.8
Q ss_pred CCHHHHHHHHHHHhhHcCCCccceEeecCCC-----CCCCHHHHHHHHHHHHHc-CCccEEecc---cccHHHHHHHhcc
Q 028264 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVD-----TKIPIEVTIGELKKLVEE-GKIKYIGLS---EACAATIRRAHAV 170 (211)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~-----~~~~~~~~~~~l~~l~~~-G~i~~iGvs---~~~~~~l~~~~~~ 170 (211)
++.+... .+-+.|.++|++++++-+..... ...+....++.++.+++. +.++...++ .-..+.++++.+.
T Consensus 19 ~~~~~k~-~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~ 97 (263)
T cd07943 19 FTLEQVR-AIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAADL 97 (263)
T ss_pred cCHHHHH-HHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCCccCHHHHHHHHHc
Confidence 4444444 44555888899888887542211 001112235555555332 335554443 2234556666554
Q ss_pred CCeeEEccccCccccCchhhHHHHHHhh
Q 028264 171 HPITAVQLEWSLWSRDVEAEIVPTCSDC 198 (211)
Q Consensus 171 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~ 198 (211)
.++.+.+-++.-+.....+.++.++++
T Consensus 98 -g~~~iri~~~~s~~~~~~~~i~~ak~~ 124 (263)
T cd07943 98 -GVDVVRVATHCTEADVSEQHIGAARKL 124 (263)
T ss_pred -CCCEEEEEechhhHHHHHHHHHHHHHC
Confidence 233433333222211123455555554
No 251
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=22.23 E-value=5e+02 Score=22.17 Aligned_cols=94 Identities=13% Similarity=-0.054 Sum_probs=50.5
Q ss_pred EEEeccCCcCCC-CCCCCCCHHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCccEEecccccH
Q 028264 83 ELATKFGISFAD-GGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACA 161 (211)
Q Consensus 83 ~i~tK~~~~~~~-~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~iGvs~~~~ 161 (211)
+|..|+...... +.....+.+... .+-+.|+..|+|++++- |.........-.++...++++.=.+--|++..+++
T Consensus 220 ~v~vRis~~~~~~~~~~~~~~ee~~-~~~~~l~~~g~d~i~vs--~g~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i~~ 296 (338)
T cd02933 220 RVGIRLSPFGTFNDMGDSDPEATFS-YLAKELNKRGLAYLHLV--EPRVAGNPEDQPPDFLDFLRKAFKGPLIAAGGYDA 296 (338)
T ss_pred ceEEEECccccCCCCCCCCCHHHHH-HHHHHHHHcCCcEEEEe--cCCCCCcccccchHHHHHHHHHcCCCEEEECCCCH
Confidence 488888754310 001123444433 35555666687666652 22111111112344444455544566677777778
Q ss_pred HHHHHHhccCCeeEEccc
Q 028264 162 ATIRRAHAVHPITAVQLE 179 (211)
Q Consensus 162 ~~l~~~~~~~~~~~~q~~ 179 (211)
+..+++++....|.+.+-
T Consensus 297 ~~a~~~l~~g~~D~V~~g 314 (338)
T cd02933 297 ESAEAALADGKADLVAFG 314 (338)
T ss_pred HHHHHHHHcCCCCEEEeC
Confidence 889999988777776653
No 252
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=22.16 E-value=5.5e+02 Score=22.68 Aligned_cols=47 Identities=9% Similarity=0.046 Sum_probs=31.7
Q ss_pred CCCCCHHHHHHHHHHHHHc--CC-ccE---EecccccHHHHHHHhcc---CCeeEE
Q 028264 130 DTKIPIEVTIGELKKLVEE--GK-IKY---IGLSEACAATIRRAHAV---HPITAV 176 (211)
Q Consensus 130 ~~~~~~~~~~~~l~~l~~~--G~-i~~---iGvs~~~~~~l~~~~~~---~~~~~~ 176 (211)
......++..++++.+++. |. +.. +|+-+.+.+.+++.++. .+++..
T Consensus 278 ~R~~~~~~~~~~i~~lr~~~~gi~v~~~~IvG~PgET~ed~~~tl~~i~~~~~~~~ 333 (444)
T PRK14325 278 NRGHTALEYKSIIRKLRAARPDIAISSDFIVGFPGETDEDFEATMKLIEDVGFDQS 333 (444)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEeeEEEECCCCCHHHHHHHHHHHHhcCCCee
Confidence 4445677889999999987 42 333 68888888877776654 444443
No 253
>COG3287 Uncharacterized conserved protein [Function unknown]
Probab=22.14 E-value=1.5e+02 Score=25.96 Aligned_cols=55 Identities=18% Similarity=0.077 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCccEEeccc
Q 028264 102 PAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSE 158 (211)
Q Consensus 102 ~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~iGvs~ 158 (211)
.++..+.+++.-+.++.++.|+.++=.+....+..++.++|.+.... +.-||.|+
T Consensus 12 ~~d~~~v~~e~~~~~~~~~~~~~~ifF~~~~~~~~~l~~~l~~~~pg--~~liGCST 66 (379)
T COG3287 12 GKDAESVIEEMARQLGSDRSDFVLIFFSPERDEHVQLASALKQAFPG--ICLIGCST 66 (379)
T ss_pred cCCHHHHHHHHHHhhCcCCCCeEEEEeccccccHHHHHHHHHhhCCC--CeEecccc
Confidence 44566677788889999999999988877666666888888877655 66788874
No 254
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=22.05 E-value=5.1e+02 Score=22.20 Aligned_cols=115 Identities=19% Similarity=0.125 Sum_probs=68.2
Q ss_pred CChHHHHHHHHHHHHcCCCeeeCcCCcC--------------CC----chHHHHHHHHhCCCCCCeEEEeccCCcCCCCC
Q 028264 35 EPEPDMIALIHHAINSGITLLDTSDIYG--------------PY----TNEILVGKALKGGMRERVELATKFGISFADGG 96 (211)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg--------------~g----~~e~~lg~~l~~~~R~~~~i~tK~~~~~~~~~ 96 (211)
.+.+....+.++|-+.|+.+|=|.-.-. -| .+-.++-. +.+ ..+.++|+|-.
T Consensus 73 l~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KIaS~~~~n~pLL~~-~A~-~gkPvilStGm-------- 142 (329)
T TIGR03569 73 LSEEDHRELKEYCESKGIEFLSTPFDLESADFLEDLGVPRFKIPSGEITNAPLLKK-IAR-FGKPVILSTGM-------- 142 (329)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCEEEECcccccCHHHHHH-HHh-cCCcEEEECCC--------
Confidence 4678888888999999999986654221 00 11111111 111 23345555543
Q ss_pred CCCCCHHHHHHHHHHHhhHcCCCccceEeecCCCCC-CCHHH-HHHHHHHHHHcCCccEEecccccHHHH
Q 028264 97 KIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK-IPIEV-TIGELKKLVEEGKIKYIGLSEACAATI 164 (211)
Q Consensus 97 ~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~-~~~~~-~~~~l~~l~~~G~i~~iGvs~~~~~~l 164 (211)
.+.+.+.++++...+ -|.+.-++.++|+.... .+.++ -+.++..|++.=. .-||+|.|+....
T Consensus 143 ---atl~Ei~~Av~~i~~-~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f~-~pVG~SdHt~G~~ 207 (329)
T TIGR03569 143 ---ATLEEIEAAVGVLRD-AGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAFD-LPVGYSDHTLGIE 207 (329)
T ss_pred ---CCHHHHHHHHHHHHH-cCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHhC-CCEEECCCCccHH
Confidence 358889999888754 35321258999997532 23332 3667777776433 3599999886643
No 255
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=22.02 E-value=2.4e+02 Score=25.64 Aligned_cols=47 Identities=21% Similarity=0.210 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCcc
Q 028264 102 PAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIK 152 (211)
Q Consensus 102 ~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~ 152 (211)
.+...+.+.+.+++|++.+.|.+ |.....++++.+..+.|++.|.+-
T Consensus 100 a~~~~~~f~~d~~~Lni~~~~~~----~rat~hi~~ii~~i~~L~~kG~aY 146 (490)
T PRK14536 100 AAHYTAAFFRDTARLNIERPSIV----CNATEHIQDMIALIKRLEARGHTY 146 (490)
T ss_pred HHHHHHHHHHHHHHcCCCCCcee----cCcccHHHHHHHHHHHHHHCCCEE
Confidence 56677788999999999988776 333566889999999999999984
No 256
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=21.99 E-value=3.2e+02 Score=23.32 Aligned_cols=92 Identities=13% Similarity=0.026 Sum_probs=57.2
Q ss_pred CcCCCchHHHHHHHHhCCCCCCeEEEeccCCcCCCCCCCCCCHHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHH
Q 028264 60 IYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTI 139 (211)
Q Consensus 60 ~Yg~g~~e~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~ 139 (211)
.||.| +-+.+++.++... .-++|+.+.. ....+.+.+...|++-+.++ ..........+.+.+-
T Consensus 5 ~~G~g-~l~~l~~~l~~~g-r~lvVt~~~~-----------~~~~~~~~v~~~L~~~~i~~---~~~~~~~~~p~~~~v~ 68 (366)
T PF00465_consen 5 IFGRG-ALEELGEELKRLG-RVLVVTDPSL-----------SKSGLVDRVLDALEEAGIEV---QVFDGVGPNPTLEDVD 68 (366)
T ss_dssp EESTT-GGGGHHHHHHCTT-EEEEEEEHHH-----------HHHTHHHHHHHHHHHTTCEE---EEEEEESSS-BHHHHH
T ss_pred EEccC-HHHHHHHHHHhcC-CEEEEECchH-----------HhCccHHHHHHHHhhCceEE---EEEecCCCCCcHHHHH
Confidence 35666 4666888887743 4455555521 13337777888888877643 4455455566778888
Q ss_pred HHHHHHHHcCCccEEecccccHHHHHHH
Q 028264 140 GELKKLVEEGKIKYIGLSEACAATIRRA 167 (211)
Q Consensus 140 ~~l~~l~~~G~i~~iGvs~~~~~~l~~~ 167 (211)
++.+.+++.|-=-=||+..-+.-.+.++
T Consensus 69 ~~~~~~~~~~~D~IIaiGGGS~~D~aK~ 96 (366)
T PF00465_consen 69 EAAEQARKFGADCIIAIGGGSVMDAAKA 96 (366)
T ss_dssp HHHHHHHHTTSSEEEEEESHHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEEcCCCCcCcHHHH
Confidence 8888888887555567666544444444
No 257
>PLN02808 alpha-galactosidase
Probab=21.97 E-value=89 Score=27.45 Aligned_cols=137 Identities=9% Similarity=0.077 Sum_probs=71.6
Q ss_pred cccCcceecccccCCcCCCCCChHHHHHHHHH-----HHHcCCCeeeCcCCcCC------C----------chHHHHHHH
Q 028264 15 LEVSAQGLGCMAMSCLYGPPEPEPDMIALIHH-----AINSGITLLDTSDIYGP------Y----------TNEILVGKA 73 (211)
Q Consensus 15 ~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~-----A~~~Gin~~DtA~~Yg~------g----------~~e~~lg~~ 73 (211)
...|++|.-+|-. ++...+++.+++..+. ..++|+++|..-..+-. | .--+.+.+.
T Consensus 29 a~tPpmGWnsW~~---~~~~i~e~~i~~~a~~mv~~Gl~~~Gy~yv~iDd~W~~~~rd~~G~~~~d~~rFP~G~~~lad~ 105 (386)
T PLN02808 29 GLTPQMGWNSWNH---FQCNINETLIKQTADAMVSSGLAALGYKYINLDDCWAELKRDSQGNLVPKASTFPSGIKALADY 105 (386)
T ss_pred cCCCcceEEchHH---HCCCCCHHHHHHHHHHHHHcchHHhCCEEEEEcCCcCCCCcCCCCCEeeChhhcCccHHHHHHH
Confidence 4578999988865 6777888888888887 46789998876555521 1 012334444
Q ss_pred HhC-CCCCCeEEEeccCCcCCCCCCCCCCHHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHH-HHcCCc
Q 028264 74 LKG-GMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKL-VEEGKI 151 (211)
Q Consensus 74 l~~-~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l-~~~G~i 151 (211)
+++ .-+=-++... +...= +.....+..+ +++--+.+...|+||+-+=.++.+. .+..+.+.+|.+. .+.|+=
T Consensus 106 iH~~GlkfGiy~~~--G~~tC-~~~~pGs~~~-e~~DA~~fA~WGvDylK~D~C~~~~--~~~~~~y~~m~~AL~~tGRp 179 (386)
T PLN02808 106 VHSKGLKLGIYSDA--GTLTC-SKTMPGSLGH-EEQDAKTFASWGIDYLKYDNCENTG--TSPQERYPKMSKALLNSGRP 179 (386)
T ss_pred HHHCCCceEEEecC--Ccccc-CCCCCcchHH-HHHHHHHHHHhCCCEEeecCcCCCC--ccHHHHHHHHHHHHHHhCCC
Confidence 433 1111122210 00000 0001123333 3444466788998876554444332 2234445555443 446665
Q ss_pred cEEeccccc
Q 028264 152 KYIGLSEAC 160 (211)
Q Consensus 152 ~~iGvs~~~ 160 (211)
-.+.+|++.
T Consensus 180 i~~slc~wg 188 (386)
T PLN02808 180 IFFSLCEWG 188 (386)
T ss_pred eEEEecCCC
Confidence 455666643
No 258
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.93 E-value=3.5e+02 Score=25.84 Aligned_cols=80 Identities=10% Similarity=0.066 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHc--CCccEEecccccHHHHHHHhccCCeeEEc
Q 028264 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEE--GKIKYIGLSEACAATIRRAHAVHPITAVQ 177 (211)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~--G~i~~iGvs~~~~~~l~~~~~~~~~~~~q 177 (211)
.+-+.+++-++.....-.....-+++|+..+... .+.+++|-+..++ +.+..|.++|.....+..+.+. |.+
T Consensus 104 ~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls--~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSR----Cq~ 177 (700)
T PRK12323 104 RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT--NHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSR----CLQ 177 (700)
T ss_pred CCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC--HHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHH----HHh
Confidence 3456677666655443334456789988876543 3566777777766 8899999999655444444433 555
Q ss_pred cccCcccc
Q 028264 178 LEWSLWSR 185 (211)
Q Consensus 178 ~~~~~~~~ 185 (211)
+.++.+..
T Consensus 178 f~f~~ls~ 185 (700)
T PRK12323 178 FNLKQMPP 185 (700)
T ss_pred cccCCCCh
Confidence 55555544
No 259
>PRK07027 cobalamin biosynthesis protein CbiG; Provisional
Probab=21.85 E-value=1.9e+02 Score=20.80 Aligned_cols=62 Identities=16% Similarity=0.105 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCccEEecccccHHHHHHH
Q 028264 99 RGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRA 167 (211)
Q Consensus 99 ~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~iGvs~~~~~~l~~~ 167 (211)
+.+.+.+.+.+++.|+..|...-++-.+..++...+-..+.++-+++ | +.+-.|+.++|...
T Consensus 13 ~~~~e~i~~ai~~~L~~~~l~~~si~~lasi~~K~~E~~L~~~A~~l---g----~pl~~~~~~eL~~~ 74 (126)
T PRK07027 13 GVPAEQIEAAIRAALAQRPLASADVRVVATLDLKADEAGLLALCARH---G----WPLRAFSAAQLAAS 74 (126)
T ss_pred CCCHHHHHHHHHHHHHHcCCCHHHhheeEehhhhcCCHHHHHHHHHh---C----CCeEEeCHHHHHhc
Confidence 46899999999999999998777777777766554433444443333 1 33334566666554
No 260
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=21.77 E-value=4e+02 Score=23.69 Aligned_cols=103 Identities=13% Similarity=-0.001 Sum_probs=58.1
Q ss_pred CCcCCCchHHHHHHHHhC----CCC-CCeEEEeccCCcCCCCCCCCCCHHHHHHHHHHHhhHcCCCccceEeecCCCCCC
Q 028264 59 DIYGPYTNEILVGKALKG----GMR-ERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKI 133 (211)
Q Consensus 59 ~~Yg~g~~e~~lg~~l~~----~~R-~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~ 133 (211)
-.|| .++-|.+++++ .++ +-++|.|-.... ..-+++..-+++.-++.+ +.++.+|.|+...
T Consensus 97 ~V~G---g~~~L~~aI~~~~~~~~p~~~I~V~~tC~~~--------liGdDi~~v~~~~~~~~~---~pvi~v~t~gf~g 162 (443)
T TIGR01862 97 IVFG---GEKKLKKLIHEAFTEFPLIKAISVYATCPTG--------LIGDDIEAVAKEVSKEIG---KDVVAVNCPGFAG 162 (443)
T ss_pred eeeC---cHHHHHHHHHHHHHhCCccceEEEECCChHH--------HhccCHHHHHHHHHHhcC---CCEEEEecCCccC
Confidence 3567 56667777776 333 556666654322 223444444544444544 6889999986543
Q ss_pred C-----HHHHHHH-HHHHH--------HcCCccEEecccc--cHHHHHHHhccCCeeE
Q 028264 134 P-----IEVTIGE-LKKLV--------EEGKIKYIGLSEA--CAATIRRAHAVHPITA 175 (211)
Q Consensus 134 ~-----~~~~~~~-l~~l~--------~~G~i~~iGvs~~--~~~~l~~~~~~~~~~~ 175 (211)
. +....++ ++++. +.+.|.-||-.++ +.+++.++++...+.+
T Consensus 163 ~~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gl~v 220 (443)
T TIGR01862 163 VSQSKGHHIANIAVINDKVGTREKEITTEYDVNIIGEYNIGGDAWVMRIYLEEMGIQV 220 (443)
T ss_pred CccchHHHHHHHHHHHHHhCCCCcccCCCCeEEEEccCcCcccHHHHHHHHHHcCCeE
Confidence 1 2333443 33443 2466777885553 3457888888754443
No 261
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=21.64 E-value=3.7e+02 Score=20.52 Aligned_cols=80 Identities=14% Similarity=0.132 Sum_probs=46.0
Q ss_pred chHHHHHHHHhCCCCCCeEEEeccCCcCCCCC---C----CCCCHHHHHHHHHHHhhHcCCCccceEeecCCCC-CCCHH
Q 028264 65 TNEILVGKALKGGMRERVELATKFGISFADGG---K----IRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDT-KIPIE 136 (211)
Q Consensus 65 ~~e~~lg~~l~~~~R~~~~i~tK~~~~~~~~~---~----~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~-~~~~~ 136 (211)
..+..+-+.++.....-++|.||+....+... . ...-.+.+++.+.+.++.-|+....+|.+-.++. ..++.
T Consensus 94 ~~d~~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~ 173 (197)
T cd04104 94 SNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFP 173 (197)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChH
Confidence 46665656665544455789999875332110 0 0112344556666666666788889999988864 34555
Q ss_pred HHHHHHHH
Q 028264 137 VTIGELKK 144 (211)
Q Consensus 137 ~~~~~l~~ 144 (211)
.+.++|..
T Consensus 174 ~l~~~~~~ 181 (197)
T cd04104 174 KLRETLLK 181 (197)
T ss_pred HHHHHHHH
Confidence 55444443
No 262
>KOG1579 consensus Homocysteine S-methyltransferase [Amino acid transport and metabolism]
Probab=21.62 E-value=2.8e+02 Score=23.64 Aligned_cols=94 Identities=15% Similarity=0.062 Sum_probs=57.4
Q ss_pred ChHHHHHHHHHHHHcCCCeeeCcCCcCC--Cc----hHHHHHHHHhC------CCCCCeE-----EEeccCCcC---CCC
Q 028264 36 PEPDMIALIHHAINSGITLLDTSDIYGP--YT----NEILVGKALKG------GMRERVE-----LATKFGISF---ADG 95 (211)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~--g~----~e~~lg~~l~~------~~R~~~~-----i~tK~~~~~---~~~ 95 (211)
.++..+++=+..+++|-+.+-|...+.. +. .++..-+..+. ..|+++. |.-=+|+.. .++
T Consensus 51 ~Pe~V~~~H~efL~aGadIi~T~Tyqas~~~~~~~~~~~~~~el~~~s~~~a~~Are~~~~~~~~v~gsiGp~~A~l~~g 130 (317)
T KOG1579|consen 51 NPEAVEQVHKEFLRAGADIISTNTYQASSDGFEEYVEEEELIELYEKSVELADLARERLGEETGYVAGSIGPYGATLADG 130 (317)
T ss_pred ChHHHHHHHHHHHHccCcEEEEeeeeecchHHhhhhhhHHHHHHHHHHHHHHHHHHHHhccccceeeeecccccceecCC
Confidence 4677889999999999999998864442 11 11112122211 1233333 322333211 111
Q ss_pred ------CCCCCCHHHHHHHHHHHhhHcCCCccceEeecCC
Q 028264 96 ------GKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRV 129 (211)
Q Consensus 96 ------~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~ 129 (211)
+....+.+.+.+-.+..|+.+.-..+|++.+...
T Consensus 131 ~eytg~Y~~~~~~~el~~~~k~qle~~~~~gvD~L~fETi 170 (317)
T KOG1579|consen 131 SEYTGIYGDNVEFEELYDFFKQQLEVFLEAGVDLLAFETI 170 (317)
T ss_pred cccccccccccCHHHHHHHHHHHHHHHHhCCCCEEEEeec
Confidence 3345678889999999999997777999988764
No 263
>PRK09462 fur ferric uptake regulator; Provisional
Probab=21.56 E-value=1.3e+02 Score=22.11 Aligned_cols=27 Identities=11% Similarity=0.204 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHHHHHHcCCccEEeccc
Q 028264 132 KIPIEVTIGELKKLVEEGKIKYIGLSE 158 (211)
Q Consensus 132 ~~~~~~~~~~l~~l~~~G~i~~iGvs~ 158 (211)
..+..-+++.|+.|.+.|+|+.+-+.+
T Consensus 49 ~i~~aTVYR~L~~L~e~Gli~~~~~~~ 75 (148)
T PRK09462 49 EIGLATVYRVLNQFDDAGIVTRHNFEG 75 (148)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 345677999999999999999987654
No 264
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=21.43 E-value=2.7e+02 Score=18.78 Aligned_cols=66 Identities=9% Similarity=-0.032 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhhHcCCCccceEeecCCCCC------CCHHHHHHHHHHHHHcCCccEEecccccHHHHHHHh
Q 028264 103 AYVRACCEASLKRLDIDCIDLYYQHRVDTK------IPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAH 168 (211)
Q Consensus 103 ~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~------~~~~~~~~~l~~l~~~G~i~~iGvs~~~~~~l~~~~ 168 (211)
.+-.+++++.++++|.+-.++|..-.+.+. .+.+......-.+...|.++.-=+--++.+++.+++
T Consensus 19 ~~R~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~~~G~v~~et~~a~~~~e~~~~~ 90 (91)
T PF08734_consen 19 PDRAEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIRSSGNVRTETLRAFPWDEFDEIV 90 (91)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHHcCCceEEEEEecCCHHHHHHHh
Confidence 566778899999999998888888665321 234556777778888998887555557888887765
No 265
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=21.38 E-value=2.8e+02 Score=21.07 Aligned_cols=49 Identities=20% Similarity=0.328 Sum_probs=30.8
Q ss_pred HHHHHHHHH-HcCCCeeeCcCCcCCCchHHHHHHHHhC-CCCCCeEEEeccCCcC
Q 028264 40 MIALIHHAI-NSGITLLDTSDIYGPYTNEILVGKALKG-GMRERVELATKFGISF 92 (211)
Q Consensus 40 ~~~~l~~A~-~~Gin~~DtA~~Yg~g~~e~~lg~~l~~-~~R~~~~i~tK~~~~~ 92 (211)
....+...+ +.|++.....-. + +.+..+-++++. ..+.+++|+| .+...
T Consensus 20 n~~~l~~~L~~~G~~v~~~~~v-~--Dd~~~I~~~l~~~~~~~dlVItt-GG~G~ 70 (170)
T cd00885 20 NAAFLAKELAELGIEVYRVTVV-G--DDEDRIAEALRRASERADLVITT-GGLGP 70 (170)
T ss_pred HHHHHHHHHHHCCCEEEEEEEe-C--CCHHHHHHHHHHHHhCCCEEEEC-CCCCC
Confidence 444555555 679987664432 2 466667777765 4578899999 44444
No 266
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=21.36 E-value=1.5e+02 Score=26.64 Aligned_cols=48 Identities=19% Similarity=0.211 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCcc
Q 028264 102 PAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIK 152 (211)
Q Consensus 102 ~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~ 152 (211)
.+...+.+++.|++||++ .|.+. ........+.+.+.+.+|.++|.+-
T Consensus 69 ~~~~~~~~~~~l~~l~I~-~D~~~--~t~~~~~~~~v~~~~~~L~~~G~iY 116 (511)
T PRK11893 69 ADRNSAAFKRLWEALNIS-YDDFI--RTTDPRHKEAVQEIFQRLLANGDIY 116 (511)
T ss_pred HHHHHHHHHHHHHHhCCC-cCCce--eCCCHHHHHHHHHHHHHHHHCCCEE
Confidence 566778899999999997 67542 1111123678899999999999974
No 267
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=21.23 E-value=5.2e+02 Score=22.07 Aligned_cols=94 Identities=16% Similarity=0.066 Sum_probs=52.3
Q ss_pred cCCCchHHHHHHHHhCCCCCCeEEEeccCCcCCCCCCCCCCHHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHH
Q 028264 61 YGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIG 140 (211)
Q Consensus 61 Yg~g~~e~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~ 140 (211)
+|.| +-..+++.+++...++++|.|-- ...+...+.+.++|+.-|.++ ..+.+...+...+.+.+-+
T Consensus 14 ~G~g-~~~~l~~~l~~~~~~~~livtd~-----------~~~~~~~~~v~~~L~~~gi~~-~~~~~~~~e~~~~~~~v~~ 80 (358)
T PRK00002 14 IGKG-LLSELGELLAPLKGKKVAIVTDE-----------TVAPLYLEKLRASLEAAGFEV-DVVVLPDGEQYKSLETLEK 80 (358)
T ss_pred EeCC-hHHHHHHHHHhcCCCeEEEEECC-----------chHHHHHHHHHHHHHhcCCce-EEEEeCCCCCCCCHHHHHH
Confidence 4555 34457888866433566666621 123457778888888877654 2333333344445666777
Q ss_pred HHHHHHHcCC---ccEEecccccHHHHHHH
Q 028264 141 ELKKLVEEGK---IKYIGLSEACAATIRRA 167 (211)
Q Consensus 141 ~l~~l~~~G~---i~~iGvs~~~~~~l~~~ 167 (211)
.++.+++.|. =-=||+..-+.-.+.++
T Consensus 81 ~~~~~~~~~~~r~d~IIavGGGsv~D~aK~ 110 (358)
T PRK00002 81 IYDALLEAGLDRSDTLIALGGGVIGDLAGF 110 (358)
T ss_pred HHHHHHHcCCCCCCEEEEEcCcHHHHHHHH
Confidence 7777777654 11255554443333343
No 268
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=21.19 E-value=3.2e+02 Score=24.22 Aligned_cols=56 Identities=20% Similarity=0.300 Sum_probs=38.1
Q ss_pred HHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCccEE--------------ecccccHHHHHHHhcc
Q 028264 109 CEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYI--------------GLSEACAATIRRAHAV 170 (211)
Q Consensus 109 ~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~i--------------Gvs~~~~~~l~~~~~~ 170 (211)
++...++|...-.+.+.+|.-..- =++||+|+++|.+..+ |+..-.++.++.+.+.
T Consensus 200 V~~~~~~Le~~G~Ev~VFHAtG~G------G~aME~Li~~G~~~~VlDlTttEl~d~l~GGv~sagp~Rl~AA~~~ 269 (403)
T PF06792_consen 200 VDAIRERLEEEGYEVLVFHATGTG------GRAMERLIREGQFDGVLDLTTTELADELFGGVLSAGPDRLEAAARA 269 (403)
T ss_pred HHHHHHHHHhcCCeEEEEcCCCCc------hHHHHHHHHcCCcEEEEECcHHHHHHHHhCCCCCCCchHHHHHHHc
Confidence 333333343333688999975432 3689999999999765 5566678888888776
No 269
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=21.16 E-value=5.9e+02 Score=22.65 Aligned_cols=122 Identities=15% Similarity=0.125 Sum_probs=71.3
Q ss_pred CChHHHHHHHHHHHHc-CCCeeeCcCCcCC-CchH--HHHHHHHhCCCC-CCeEEEeccCCcCCCCCCCCCCHHHHHHHH
Q 028264 35 EPEPDMIALIHHAINS-GITLLDTSDIYGP-YTNE--ILVGKALKGGMR-ERVELATKFGISFADGGKIRGDPAYVRACC 109 (211)
Q Consensus 35 ~~~~~~~~~l~~A~~~-Gin~~DtA~~Yg~-g~~e--~~lg~~l~~~~R-~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~ 109 (211)
.+.++..+++++.-+. |++-+=-+..-.- -..+ +.+-+.|++++. +.+-|.|+..... +..+...+
T Consensus 138 ls~eei~~~i~yI~~~p~I~~VlLSGGDPLll~d~~L~~iL~~L~~IphV~~IRI~TR~pvv~---------P~RIT~el 208 (417)
T TIGR03820 138 PSKEQILEGIEYIRNTPQIRDVLLSGGDPLLLSDDYLDWILTELRAIPHVEVIRIGTRVPVVL---------PQRITDEL 208 (417)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEEeCCccccCChHHHHHHHHHHhhcCCCceEEEeecccccc---------ccccCHHH
Confidence 3567788888877764 8874433221110 0121 223344444443 3366888865443 33344455
Q ss_pred HHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCccEEecc-------cccHHHHHHHhcc
Q 028264 110 EASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS-------EACAATIRRAHAV 170 (211)
Q Consensus 110 ~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~iGvs-------~~~~~~l~~~~~~ 170 (211)
-+.|++.+ .-.+.+|.-.+.+-.+++.+|++.|++.|.. ++.. |-+++.+.++.+.
T Consensus 209 l~~Lk~~~---~~~v~~h~nhp~Eit~~a~~Al~~L~~aGI~--l~nQsVLLkGVND~~~~l~~L~~~ 271 (417)
T TIGR03820 209 VAILKKHH---PVWLNTHFNHPREITASSKKALAKLADAGIP--LGNQSVLLAGVNDCPRIMKKLVHK 271 (417)
T ss_pred HHHHHhcC---CeEEEEeCCChHhChHHHHHHHHHHHHcCCE--EEeeceEECCcCCCHHHHHHHHHH
Confidence 55566665 3445678765555578999999999999964 3332 4567776666544
No 270
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=21.08 E-value=3.5e+02 Score=20.04 Aligned_cols=38 Identities=18% Similarity=0.330 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHHcCC--ccE---EecccccHHHHHHHhcc
Q 028264 133 IPIEVTIGELKKLVEEGK--IKY---IGLSEACAATIRRAHAV 170 (211)
Q Consensus 133 ~~~~~~~~~l~~l~~~G~--i~~---iGvs~~~~~~l~~~~~~ 170 (211)
.+.++..++++.+++.|. +.. +|+...+.+.+.++++.
T Consensus 133 ~~~~~~~~~i~~~~~~g~~~v~~~~~~g~~~~~~~~~~~~~~~ 175 (216)
T smart00729 133 HTVEDVLEAVEKLREAGPIKVSTDLIVGLPGETEEDFEETLKL 175 (216)
T ss_pred CCHHHHHHHHHHHHHhCCcceEEeEEecCCCCCHHHHHHHHHH
Confidence 456889999999999993 221 34454566776666553
No 271
>PRK05588 histidinol-phosphatase; Provisional
Probab=21.05 E-value=4.4e+02 Score=21.16 Aligned_cols=104 Identities=13% Similarity=0.148 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHcCCCeeeCcCCcCCC---------chHHHHHHHHhCCCCCCeEEEeccCCcCCCCCCCCCCHHHHHHH
Q 028264 38 PDMIALIHHAINSGITLLDTSDIYGPY---------TNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRAC 108 (211)
Q Consensus 38 ~~~~~~l~~A~~~Gin~~DtA~~Yg~g---------~~e~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~ 108 (211)
....+.++.|.+.|+..+ .+++.... .-+..+ +.++..+..++.+..-++.. +. -...
T Consensus 16 ~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~-~~i~~~~~~~I~~GiE~~~~----------~~-~~~~ 82 (255)
T PRK05588 16 MKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYF-NKYSKYRNNKLLLGIELGME----------KD-LIEE 82 (255)
T ss_pred cCHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHH-HHHHHHhcCCcceEEEeccc----------CC-CHHH
Confidence 447799999999999988 77764210 111212 11111122344444444322 11 2445
Q ss_pred HHHHhhHcCCCccceEeecCCCCCC----------CHHH----HHHHHHHHHH-cCCccEEe
Q 028264 109 CEASLKRLDIDCIDLYYQHRVDTKI----------PIEV----TIGELKKLVE-EGKIKYIG 155 (211)
Q Consensus 109 ~~~sL~~Lg~~~lDl~~lh~~~~~~----------~~~~----~~~~l~~l~~-~G~i~~iG 155 (211)
.++.|+..+.|++ +.-+|+.+... +.++ -++.+.++.+ .+++.-+|
T Consensus 83 ~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~~dvlg 143 (255)
T PRK05588 83 NKELINKYEFDYV-IGSIHLVDKLDLYLDEFYKDKSKEEAYHIYFENMLKCLEKYDFIDSLG 143 (255)
T ss_pred HHHHHhhCCCCeE-EEeEEeeCCCcchHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 5667777776665 67888754211 2333 3577777776 46565555
No 272
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=21.05 E-value=5.2e+02 Score=25.28 Aligned_cols=80 Identities=13% Similarity=0.050 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHc--CCccEEecccccHHHHHHHhccCCeeEEcc
Q 028264 101 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEE--GKIKYIGLSEACAATIRRAHAVHPITAVQL 178 (211)
Q Consensus 101 ~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~--G~i~~iGvs~~~~~~l~~~~~~~~~~~~q~ 178 (211)
+.+.+++-++...........-+|+|+..+... .+.+++|-+..++ ..++.|-++|.....+..+ .-.|.++
T Consensus 100 gVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT--~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TI----rSRCq~f 173 (830)
T PRK07003 100 GVDEMAALLERAVYAPVDARFKVYMIDEVHMLT--NHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTV----LSRCLQF 173 (830)
T ss_pred cHHHHHHHHHHHHhccccCCceEEEEeChhhCC--HHHHHHHHHHHHhcCCCeEEEEEECChhhccchh----hhheEEE
Confidence 456666666654433323345788888776543 3567777777666 5889999998644333333 3346777
Q ss_pred ccCccccC
Q 028264 179 EWSLWSRD 186 (211)
Q Consensus 179 ~~~~~~~~ 186 (211)
+|..+...
T Consensus 174 ~Fk~Ls~e 181 (830)
T PRK07003 174 NLKQMPAG 181 (830)
T ss_pred ecCCcCHH
Confidence 77766654
No 273
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=21.01 E-value=5.4e+02 Score=22.14 Aligned_cols=91 Identities=14% Similarity=0.125 Sum_probs=57.9
Q ss_pred CCCeEEEeccCCcCC--------CCCCCCCCHHHHHHHHHHHhhHcCCCccceEeecC-CCCCCCHHHHHHHHHHHHHc-
Q 028264 79 RERVELATKFGISFA--------DGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHR-VDTKIPIEVTIGELKKLVEE- 148 (211)
Q Consensus 79 R~~~~i~tK~~~~~~--------~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~-~~~~~~~~~~~~~l~~l~~~- 148 (211)
|.-++|+|..+.... .|.....+.+.|..++....+.++. .++-+.+-. =++...++.+.+++..+.+.
T Consensus 100 r~t~cvSsqvGC~~~C~FC~tg~~g~~rnlt~~EIv~qv~~~~~~~~~-~~~~IvfmGmGEPlln~~~v~~~i~~l~~~~ 178 (345)
T PRK14457 100 RLTVCVSSQVGCPMACDFCATGKGGLKRSLKAHEIVDQVLTVQEDMQR-RVSHVVFMGMGEPLLNIDEVLAAIRCLNQDL 178 (345)
T ss_pred CCEEEEeCCCCCCCcCCcCCCCCCCCccccCHHHHHHHHHHHHHHhcC-CCCEEEEEecCccccCHHHHHHHHHHHhccc
Confidence 556777777665331 1122357899999999988777753 356555554 34555678899999998875
Q ss_pred CC-ccEEeccccc-HHHHHHHhcc
Q 028264 149 GK-IKYIGLSEAC-AATIRRAHAV 170 (211)
Q Consensus 149 G~-i~~iGvs~~~-~~~l~~~~~~ 170 (211)
|. .+.|-+|+.. ...++++.+.
T Consensus 179 ~i~~r~itvST~G~~~~i~~L~~~ 202 (345)
T PRK14457 179 GIGQRRITVSTVGVPKTIPQLAEL 202 (345)
T ss_pred CCccCceEEECCCchhhHHHHHhh
Confidence 43 2456666643 4457777654
No 274
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=20.96 E-value=5.1e+02 Score=21.85 Aligned_cols=62 Identities=18% Similarity=0.213 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHHHHHhhHcCCCccc-eEeecCCCCCCCHHHHHHHHHHHHHcCCccEEecccccHHHHHHH
Q 028264 98 IRGDPAYVRACCEASLKRLDIDCID-LYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRA 167 (211)
Q Consensus 98 ~~~~~~~i~~~~~~sL~~Lg~~~lD-l~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~iGvs~~~~~~l~~~ 167 (211)
.........+++.+.|+-||.++ | -.+.+ ....+.-.+++++|+++|++ |...|+ .+++.+.
T Consensus 45 ~~R~~~~~~~~i~~~L~wlGl~~-D~~~~~Q----S~r~~~Y~~~~~~L~~~g~a-Y~C~Cs--r~~l~~~ 107 (314)
T PF00749_consen 45 PERCRPEFYDAILEDLRWLGLEW-DYGPYYQ----SDRLEIYQEAAEKLIDKGKA-YPCFCS--REELKAA 107 (314)
T ss_dssp TTTCHHHHHHHHHHHHHHHT----STCEEEG----GGGHHHHHHHHHHHHHTTSE-EEEESE--HHHHHHH
T ss_pred cccchhhHHHHHHhheeEEEEec-CCeEEeH----HHHHHHHHHHHHHHhhcCCC-ccccCC--HHHHHHH
Confidence 34567888899999999999876 3 11111 12356678889999999998 666665 4444443
No 275
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=20.93 E-value=6e+02 Score=22.61 Aligned_cols=128 Identities=13% Similarity=0.151 Sum_probs=67.8
Q ss_pred CChHHHHHHHHHHHHcCCCee-----eCcCCcCCCchHHHHHHHHhC---CC-CCCeEEEeccCCcCCCCCCCCCCHHHH
Q 028264 35 EPEPDMIALIHHAINSGITLL-----DTSDIYGPYTNEILVGKALKG---GM-RERVELATKFGISFADGGKIRGDPAYV 105 (211)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gin~~-----DtA~~Yg~g~~e~~lg~~l~~---~~-R~~~~i~tK~~~~~~~~~~~~~~~~~i 105 (211)
.+.++..+-++...+.|++.| |+. .|++.....-+.+.++. .. ..++ +++... +..+
T Consensus 178 r~~e~Vv~Ei~~l~~~G~~ei~l~~~~~~-~y~d~~~~~~l~~Ll~~l~~~~~~~ri----r~~~~~---------p~~l 243 (445)
T PRK14340 178 HPFASVLDEVRALAEAGYREITLLGQNVN-SYSDPEAGADFAGLLDAVSRAAPEMRI----RFTTSH---------PKDI 243 (445)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEEeecccc-hhhccCCCchHHHHHHHHhhcCCCcEE----EEccCC---------hhhc
Confidence 356777777888889998766 333 45531100112333333 11 1122 222212 3333
Q ss_pred HHHHHHHhhHc--CCCccceEeecCC-------CCCCCHHHHHHHHHHHHHc--CCcc----EEecccccHHHHHHHhcc
Q 028264 106 RACCEASLKRL--DIDCIDLYYQHRV-------DTKIPIEVTIGELKKLVEE--GKIK----YIGLSEACAATIRRAHAV 170 (211)
Q Consensus 106 ~~~~~~sL~~L--g~~~lDl~~lh~~-------~~~~~~~~~~~~l~~l~~~--G~i~----~iGvs~~~~~~l~~~~~~ 170 (211)
.+.+-+.+++. |..++++=+=|.. ......++..++++.+++. |..- =+|+-+.+.+.+++.++.
T Consensus 244 ~~ell~~~~~~~~g~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~pgi~i~td~IvGfPgET~edf~~tl~~ 323 (445)
T PRK14340 244 SESLVRTIAARPNICNHIHLPVQSGSSRMLRRMNRGHTIEEYLEKIALIRSAIPGVTLSTDLIAGFCGETEEDHRATLSL 323 (445)
T ss_pred CHHHHHHHHhCCCCCCeEEECCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEeccEEEECCCCCHHHHHHHHHH
Confidence 33444444443 5666665443332 3334567888999999887 6532 267777777777666554
Q ss_pred ---CCeeEE
Q 028264 171 ---HPITAV 176 (211)
Q Consensus 171 ---~~~~~~ 176 (211)
.+|+.+
T Consensus 324 ~~~~~~~~~ 332 (445)
T PRK14340 324 MEEVRFDSA 332 (445)
T ss_pred HHhcCCCEE
Confidence 555543
No 276
>COG2877 KdsA 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase [Cell envelope biogenesis, outer membrane]
Probab=20.90 E-value=2.3e+02 Score=23.30 Aligned_cols=84 Identities=13% Similarity=0.198 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhhHcCCCccceEeecCCCC----------CCCHHHHHHHHHHHHHcCCccEEecc----cccHHHHHHH
Q 028264 102 PAYVRACCEASLKRLDIDCIDLYYQHRVDT----------KIPIEVTIGELKKLVEEGKIKYIGLS----EACAATIRRA 167 (211)
Q Consensus 102 ~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~----------~~~~~~~~~~l~~l~~~G~i~~iGvs----~~~~~~l~~~ 167 (211)
.-.+-+.+++..++||+.| ++=...|- ...+++-++.|++++++ +|+- -|.+++....
T Consensus 33 a~~~a~~lk~~t~~lgi~~---vfKsSfDKANRsSi~s~RGpGLeeglki~~~vK~e-----fgv~ilTDVHe~~q~~~v 104 (279)
T COG2877 33 ALEIAEHLKELTEKLGIPY---VFKSSFDKANRSSIHSYRGPGLEEGLKILQEVKEE-----FGVPILTDVHEPSQAQPV 104 (279)
T ss_pred HHHHHHHHHHHHhccCCce---EEecccccccccccccccCCCHHHHHHHHHHHHHH-----cCCceeeccCChhhcchH
Confidence 3446667778888888654 44333321 12368889999999987 4443 2666666666
Q ss_pred hccCCeeEEccccCccccCchhhHHHHHHhh
Q 028264 168 HAVHPITAVQLEWSLWSRDVEAEIVPTCSDC 198 (211)
Q Consensus 168 ~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~ 198 (211)
.+. .|+.|++--++.+. +|+.++.+.
T Consensus 105 A~V--vDilQiPAFLcRQT---DLl~A~AkT 130 (279)
T COG2877 105 AEV--VDVLQIPAFLCRQT---DLLVAAAKT 130 (279)
T ss_pred Hhh--hhhhcchHHHhhhH---HHHHHHHHh
Confidence 555 67889988776664 555555444
No 277
>PRK09389 (R)-citramalate synthase; Provisional
Probab=20.85 E-value=6.3e+02 Score=22.88 Aligned_cols=27 Identities=4% Similarity=0.193 Sum_probs=22.5
Q ss_pred CCChHHHHHHHHHHHHcCCCeeeCcCC
Q 028264 34 PEPEPDMIALIHHAINSGITLLDTSDI 60 (211)
Q Consensus 34 ~~~~~~~~~~l~~A~~~Gin~~DtA~~ 60 (211)
..+.++..++.+...+.|+..++....
T Consensus 20 ~~s~e~K~~ia~~L~~~Gv~~IE~G~p 46 (488)
T PRK09389 20 SLTPEEKLEIARKLDELGVDVIEAGSA 46 (488)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 346788899999999999999998743
No 278
>PF02426 MIase: Muconolactone delta-isomerase; InterPro: IPR003464 This small enzyme forms a homodecameric complex, that catalyses the third step in the catabolism of catechol to succinate- and acetyl-coa in the beta-ketoadipate pathway (5.3.3.4 from EC). The protein has a ferredoxin-like fold according to SCOP.; GO: 0006725 cellular aromatic compound metabolic process
Probab=20.80 E-value=2e+02 Score=19.67 Aligned_cols=48 Identities=15% Similarity=0.155 Sum_probs=29.6
Q ss_pred HHHHHHHHHcCCccEEec--------cc---ccHHHHHHHhccCC-eeEEccccCccccC
Q 028264 139 IGELKKLVEEGKIKYIGL--------SE---ACAATIRRAHAVHP-ITAVQLEWSLWSRD 186 (211)
Q Consensus 139 ~~~l~~l~~~G~i~~iGv--------s~---~~~~~l~~~~~~~~-~~~~q~~~~~~~~~ 186 (211)
.+...+|+++|+++.+.- |- -+.+++.+++...| +....++..++.+.
T Consensus 28 ~~~a~eLq~~G~~~~lWr~~G~~~n~~Ifdv~d~~eLh~lL~sLPL~p~m~i~VtpL~~H 87 (91)
T PF02426_consen 28 KARAQELQRQGKWRHLWRVVGRYANVSIFDVEDNDELHELLSSLPLFPYMDIEVTPLARH 87 (91)
T ss_pred HHHHHHHHHCCeeeEEEEecCCcceEEEEECCCHHHHHHHHHhCCCccceeeeEEecccC
Confidence 566679999999988542 21 35678888888743 22334444444443
No 279
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=20.76 E-value=2.7e+02 Score=23.24 Aligned_cols=49 Identities=18% Similarity=0.140 Sum_probs=39.2
Q ss_pred ccceEeecCCCCCCCH---HHHHHHHHHHHHcCCccEEecccccHHHHHHHhcc
Q 028264 120 CIDLYYQHRVDTKIPI---EVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV 170 (211)
Q Consensus 120 ~lDl~~lh~~~~~~~~---~~~~~~l~~l~~~G~i~~iGvs~~~~~~l~~~~~~ 170 (211)
..+++++..|....|. .++|+.+.+++++|. .|=+++|..+.++++.+.
T Consensus 156 ~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~--till~sH~l~e~~~~~d~ 207 (306)
T PRK13537 156 DPDVLVLDEPTTGLDPQARHLMWERLRSLLARGK--TILLTTHFMEEAERLCDR 207 (306)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCC--EEEEECCCHHHHHHhCCE
Confidence 4789999998776664 578999999988875 478888999888887654
No 280
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=20.67 E-value=1.4e+02 Score=28.20 Aligned_cols=44 Identities=27% Similarity=0.267 Sum_probs=32.4
Q ss_pred HHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCccEEe
Q 028264 109 CEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIG 155 (211)
Q Consensus 109 ~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~iG 155 (211)
.--.|+.||++ |++.++++|+ .+.+.+..||++|...|-+..=|
T Consensus 411 ~vL~Lkalgi~--d~l~F~f~d~-P~~~~l~~AL~~L~~lgald~~g 454 (674)
T KOG0922|consen 411 AVLQLKALGIN--DPLRFPFIDP-PPPEALEEALEELYSLGALDDRG 454 (674)
T ss_pred HHHHHHhcCCC--CcccCCCCCC-CChHHHHHHHHHHHhcCcccCcC
Confidence 33458999987 8999998876 34567888899988777665433
No 281
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=20.66 E-value=5.2e+02 Score=21.83 Aligned_cols=115 Identities=12% Similarity=-0.015 Sum_probs=59.6
Q ss_pred HHHHHHHHHHcCCCeeeCcCCcCCCchHHHHHHHHhCCCCCCeEEEeccCCcCCCCCCCCCCHHHHHHHHHHHhhHcCCC
Q 028264 40 MIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDID 119 (211)
Q Consensus 40 ~~~~l~~A~~~Gin~~DtA~~Yg~g~~e~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~ 119 (211)
.+++...+..+|+.|+-++..|-..+..+.+.++++. +.- -+|......... ...+. .++++..-....+.
T Consensus 160 kkdi~~i~~a~g~~yVA~~~~~~~~~~~~~i~~A~~~-~Gp-s~I~~~spC~~~----~~~~~---~~~~~~~k~Av~tg 230 (300)
T PRK11864 160 KKPVPDIMAAHKVPYVATASIAYPEDFIRKLKKAKEI-RGF-KFIHLLAPCPPG----WRFDP---DKTIEIARLAVETG 230 (300)
T ss_pred CCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHhC-CCC-EEEEEeCCCCCC----CCcCh---HHHHHHHHHHHHcC
Confidence 4567777888899999998887655566667777643 333 334444332221 11222 33334333444445
Q ss_pred ccceEeecC-------CCCCC-CHHHHHHHHHHHHHcCCccEEecccccHHHHHHHh
Q 028264 120 CIDLYYQHR-------VDTKI-PIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAH 168 (211)
Q Consensus 120 ~lDl~~lh~-------~~~~~-~~~~~~~~l~~l~~~G~i~~iGvs~~~~~~l~~~~ 168 (211)
|.=||-... +.... +..+....-+-|+.+|+.+++. +++++++.
T Consensus 231 ~wplye~~~g~~~~~~~~~~~~~~~~~~pv~~~l~~q~Rf~~L~-----~~~~~~~q 282 (300)
T PRK11864 231 VWPLFEYENGKFKLNSPSKTLLDKKKRKPVEEYLKLQGRFKHLT-----EEEIKGLQ 282 (300)
T ss_pred CceEEEEECCEEEEccCCccccccccCCCHHHHHhhccchhcCC-----HHHHHHHH
Confidence 555554442 11100 1122234445566788887772 45454443
No 282
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=20.58 E-value=3.9e+02 Score=20.32 Aligned_cols=66 Identities=21% Similarity=0.102 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHcCCccEEecccccHHHHHHHhcc-----CCeeEEccccCccccCchhhHHHHHHhhcCc
Q 028264 135 IEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV-----HPITAVQLEWSLWSRDVEAEIVPTCSDCLGN 201 (211)
Q Consensus 135 ~~~~~~~l~~l~~~G~i~~iGvs~~~~~~l~~~~~~-----~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~ 201 (211)
...+.+.|++|++.|.- -.=+||.+.......+.. ..++.+-.....-.+.|.++++..+-+.+++
T Consensus 86 ~~g~~e~L~~l~~~g~~-~~i~Sn~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~~~ 156 (199)
T PRK09456 86 RPEVIAIMHKLREQGHR-VVVLSNTNRLHTTFWPEEYPEVRAAADHIYLSQDLGMRKPEARIYQHVLQAEGF 156 (199)
T ss_pred CHHHHHHHHHHHhCCCc-EEEEcCCchhhHHHHHhhchhHHHhcCEEEEecccCCCCCCHHHHHHHHHHcCC
Confidence 46789999999999843 344566554443332221 1133333333333334445666666555444
No 283
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=20.52 E-value=4.9e+02 Score=21.44 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=21.6
Q ss_pred CChHHHHHHHHHHHHcCCCeeeCcC
Q 028264 35 EPEPDMIALIHHAINSGITLLDTSD 59 (211)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gin~~DtA~ 59 (211)
.+.++..++++...+.|++.++...
T Consensus 17 ~s~e~K~~i~~~L~~~Gv~~IEvGs 41 (274)
T cd07938 17 IPTEDKIELIDALSAAGLRRIEVTS 41 (274)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 4668888999999999999999973
No 284
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=20.34 E-value=5.1e+02 Score=21.59 Aligned_cols=57 Identities=12% Similarity=-0.035 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCccEEeccc
Q 028264 101 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSE 158 (211)
Q Consensus 101 ~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~~iGvs~ 158 (211)
+++.+++.++..++ .+-+.+--+-++..+...+.+.....++..++.|+--.+=++.
T Consensus 138 ~~~~~~~~~~~~~~-~~~~~vvg~~l~~~e~~~~~~~~~~~~~~A~~~g~~i~~Ha~E 194 (324)
T TIGR01430 138 QPEAAEETLELAKP-YKEQTIVGFGLAGDERGGPPPDFVRAFAIARELGLHLTVHAGE 194 (324)
T ss_pred CHHHHHHHHHHHHh-hccCcEEEecCCCCCCCCCHHHHHHHHHHHHHCCCCeEEecCC
Confidence 46777777777665 2211121122333323334566667777777777655554443
No 285
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=20.31 E-value=4.4e+02 Score=20.85 Aligned_cols=41 Identities=24% Similarity=0.248 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhhHcCCCccceEeecCCCC-----CCCHHHHHHHHH
Q 028264 103 AYVRACCEASLKRLDIDCIDLYYQHRVDT-----KIPIEVTIGELK 143 (211)
Q Consensus 103 ~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~-----~~~~~~~~~~l~ 143 (211)
....+..+.+.+.+..+..|++.+..... ..+.+|+.+.|.
T Consensus 105 ~aa~~~w~~a~~~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~ 150 (198)
T COG2109 105 AAAKAGWEHAKEALADGKYDLVILDELNYALRYGLLPLEEVVALLK 150 (198)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHh
Confidence 45666677777777777778877776532 234555555554
No 286
>PRK03995 hypothetical protein; Provisional
Probab=20.26 E-value=4.7e+02 Score=21.73 Aligned_cols=82 Identities=16% Similarity=0.020 Sum_probs=46.0
Q ss_pred ccCcceecccccCCcCCCCCChHHHHHHHHHHHHcCCCeeeCcCCcCCC-chHHHHHHHHhC-CCCCCeEEEeccCCcCC
Q 028264 16 EVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPY-TNEILVGKALKG-GMRERVELATKFGISFA 93 (211)
Q Consensus 16 ~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g-~~e~~lg~~l~~-~~R~~~~i~tK~~~~~~ 93 (211)
..+.+|||.--. +.+.-+.|++.++.+=...+.|.-. .++.++-+++.+ ..+-+.++.-+=
T Consensus 181 ~~~~iGiGGgHY------------apr~T~~~l~~~~~~GHi~pky~l~~~~~~~i~~a~~ks~~~~~~~~id~K----- 243 (267)
T PRK03995 181 FKPAIGIGGGHY------------APKFTKLALESEYCFGHIIPKYALDHLSEEVLIQAIEKSTPEIDRIVIDWK----- 243 (267)
T ss_pred CCEEEEECCCCc------------cHHHHHHHhhCCeeEEeEccccchhcCCHHHHHHHHHhccCCCCEEEEecC-----
Confidence 345667776443 2234556666677766666666532 356666677755 222222222211
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHcCCCc
Q 028264 94 DGGKIRGDPAYVRACCEASLKRLDIDC 120 (211)
Q Consensus 94 ~~~~~~~~~~~i~~~~~~sL~~Lg~~~ 120 (211)
..+...++.+.+.|+.+|++.
T Consensus 244 ------~~k~~~r~~i~~~le~~gi~v 264 (267)
T PRK03995 244 ------GVKSEDRERIIEFLEELGIEV 264 (267)
T ss_pred ------CCCHHHHHHHHHHHHHCCCeE
Confidence 224557777888888888653
No 287
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=20.17 E-value=2.7e+02 Score=25.03 Aligned_cols=47 Identities=19% Similarity=0.174 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhhHcCCCccceEeecCCCCCCCHHHHHHHHHHHHHcCCcc
Q 028264 102 PAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIK 152 (211)
Q Consensus 102 ~~~i~~~~~~sL~~Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i~ 152 (211)
.+...+.+.+.+++||+.+.+. .|......+++.+.+++|+++|.+-
T Consensus 88 a~~~~~~f~~dl~~LgI~~d~~----~~raT~hi~~i~~~i~~L~ekG~aY 134 (465)
T TIGR00435 88 SERFIEAYFEDMKALNVLPPDL----EPRATEHIDEIIEFIEQLIEKGYAY 134 (465)
T ss_pred HHHHHHHHHHHHHHhCCCCCcC----CccccccHHHHHHHHHHHHHCCCEE
Confidence 4667788899999999986653 3333456778889999999998863
Done!