BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028266
(211 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2F15|A Chain A, Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase Beta2 Subunit
Length = 96
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 48/80 (60%)
Query: 25 PTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAP 84
PT+I WS G EV + GS++NW T+I L +S DF + LP G +QY+F VDG W + P
Sbjct: 11 PTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPEGEHQYKFFVDGQWVHDP 70
Query: 85 DLPSTQDDDGNVYNILDLQE 104
P G + N++ +++
Sbjct: 71 SEPVVTSQLGTINNLIHVKK 90
>pdb|1Z0M|A Chain A, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase Beta1 Subunit
pdb|1Z0M|B Chain B, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase Beta1 Subunit
pdb|1Z0M|C Chain C, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase Beta1 Subunit
Length = 96
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 25 PTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAP 84
PT+ W+ G EV + GS++NW +++ L RS +F + LP G +QY+F VDG W + P
Sbjct: 12 PTVFRWTGGGKEVYLSGSFNNW-SKLPLTRSQNNFVAILDLPEGEHQYKFFVDGQWTHDP 70
Query: 85 DLPSTQDDDGNVYNILDLQE 104
P G V NI+ +++
Sbjct: 71 SEPIVTSQLGTVNNIIQVKK 90
>pdb|1Z0N|A Chain A, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase
pdb|1Z0N|B Chain B, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase
pdb|1Z0N|C Chain C, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase
Length = 96
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 25 PTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAP 84
PT+ W+ G EV + GS++NW +++ RS +F + LP G +QY+F VDG W + P
Sbjct: 12 PTVFRWTGGGKEVYLSGSFNNW-SKLPXTRSQNNFVAILDLPEGEHQYKFFVDGQWTHDP 70
Query: 85 DLPSTQDDDGNVYNILDLQE 104
P G V NI+ +++
Sbjct: 71 SEPIVTSQLGTVNNIIQVKK 90
>pdb|4EAI|B Chain B, Co-Crystal Structure Of An Ampk Core With Amp
pdb|4EAJ|B Chain B, Co-Crystal Of Ampk Core With Amp Soaked With Atp
Length = 85
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 133 AEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGS 192
+E+ K PP++PPHL +LN + P L P HV+LNHLY K SV+ L +
Sbjct: 11 SEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYALSIKD--SVMVLSA 68
Query: 193 THRFLAKYVTVVLYK 207
THR+ KYVT +LYK
Sbjct: 69 THRYKKKYVTTLLYK 83
>pdb|2V8Q|B Chain B, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Amp
pdb|2V92|B Chain B, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Atp-Amp
pdb|2V9J|B Chain B, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Mg.Atp-Amp
pdb|2Y8L|B Chain B, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With Two Adp
pdb|2Y8Q|B Chain B, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With One Adp
pdb|2Y94|B Chain B, Structure Of An Active Form Of Mammalian Ampk
pdb|2YA3|B Chain B, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With Coumarin Adp
Length = 87
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 133 AEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGS 192
+E+ K PP++PPHL +LN + P L P HV+LNHLY K SV+ L +
Sbjct: 13 SEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYALSIKD--SVMVLSA 70
Query: 193 THRFLAKYVTVVLYK 207
THR+ KYVT +LYK
Sbjct: 71 THRYKKKYVTTLLYK 85
>pdb|4EAG|B Chain B, Co-Crystal Structure Of An Chimeric Ampk Core With Atp
Length = 85
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 134 EDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGST 193
E+ K PP++PPHL +LN P L P HV+LNHLY K G V+ L +T
Sbjct: 12 EERFKAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLNHLYALSIKDG--VMVLSAT 69
Query: 194 HRFLAKYVTVVLYKSM 209
HR+ KYVT +LYK +
Sbjct: 70 HRYKKKYVTTLLYKPI 85
>pdb|4EAK|B Chain B, Co-Crystal Structure Of An Ampk Core With Atp
pdb|4EAL|B Chain B, Co-Crystal Of Ampk Core With Atp Soaked With Amp
Length = 72
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 138 KEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFL 197
K PP++PPHL +LN P L P HV+LNHLY K G V+ L +THR+
Sbjct: 3 KAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLNHLYALSIKDG--VMVLSATHRYK 60
Query: 198 AKYVTVVLYK 207
KYVT +LYK
Sbjct: 61 KKYVTTLLYK 70
>pdb|2QLV|B Chain B, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
pdb|2QLV|E Chain E, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
Length = 252
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 97/251 (38%), Gaps = 73/251 (29%)
Query: 24 IPTMITWSHDGCEVAVEGSWDNWKTRIAL----QRSGKDFTIMKVLPSGVYQYRFLVDGL 79
+P I W G +V V GS+ W+ I L +G +++LP G +++RF+VD
Sbjct: 4 VPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLP-GTHRFRFIVDNE 62
Query: 80 WKYAPDLPSTQDDDGNVYNILDLQ--EYVPDDLESISSFE-----PPQSPETSYNNLQLT 132
+ + LP+ D GN N ++++ E P + E I S E PP S +S LQ+
Sbjct: 63 LRVSDFLPTATDQMGNFVNYIEVRQPEKNPTN-EKIRSKEADSMRPPTSDRSSI-ALQIG 120
Query: 133 A-------------EDFAKEPPL------------------------------------- 142
ED + PPL
Sbjct: 121 KDPDDFGDGYTRFHEDLSPRPPLEYTTDIPAVFTDPSVMERYYYTLDRQQSNTDTSWLTP 180
Query: 143 --VPPHLQMTLLNVPASYMEI-----PPPLSRPQHVVLNHLYMQKGKSGPSVVALGSTHR 195
+PP L+ +LN + + L P HVVLNHL K VA S R
Sbjct: 181 PQLPPQLENVILNKYYATQDQFNENNSGALPIPNHVVLNHLVTSSIKHNTLCVA--SIVR 238
Query: 196 FLAKYVTVVLY 206
+ KYVT +LY
Sbjct: 239 YKQKYVTQILY 249
>pdb|2OOX|B Chain B, Crystal Structure Of The Adenylate Sensor From
Amp-activated Protein Kinase Complexed With Amp
pdb|2OOX|D Chain D, Crystal Structure Of The Adenylate Sensor From
Amp-activated Protein Kinase Complexed With Amp
pdb|2OOY|B Chain B, Crystal Structure Of The Adenylate Sensor From Amp-
Activated Protein Kinase Complexed With Atp
pdb|2OOY|D Chain D, Crystal Structure Of The Adenylate Sensor From Amp-
Activated Protein Kinase Complexed With Atp
pdb|2QR1|B Chain B, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp
pdb|2QR1|D Chain D, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp
pdb|2QRC|B Chain B, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Amp
pdb|2QRC|D Chain D, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Amp
pdb|2QRD|B Chain B, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Atp
pdb|2QRD|D Chain D, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Atp
pdb|2QRE|B Chain B, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With
5-Aminoimidazole-4-Carboxamide 1-Beta-D- Ribofuranotide
(Zmp)
pdb|2QRE|D Chain D, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With
5-Aminoimidazole-4-Carboxamide 1-Beta-D- Ribofuranotide
(Zmp)
Length = 97
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 148 QMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYK 207
+ +LN +Y E L P HV+LNHL + G V+AL +T R+ KYVT ++K
Sbjct: 36 EKCILNSNTAYKEDQSVLPNPNHVLLNHLAAANTQLG--VLALSATTRYHRKYVTTAMFK 93
Query: 208 SM 209
+
Sbjct: 94 NF 95
>pdb|3T4N|B Chain B, Structure Of The Regulatory Fragment Of Saccharomyces
Cerevisiae Ampk In Complex With Adp
pdb|3TDH|B Chain B, Structure Of The Regulatory Fragment Of Sccharomyces
Cerevisiae Ampk In Complex With Amp
pdb|3TE5|B Chain B, Structure Of The Regulatory Fragment Of Sacchromyces
Cerevisiae Ampk In Complex With Nadh
Length = 113
Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 140 PPLVPPHLQMTLLNVPASYMEI-----PPPLSRPQHVVLNHLYMQKGKSGPSVVALGSTH 194
PP +PP L+ +LN + + L P HVVLNHL K VA S
Sbjct: 38 PPQLPPQLENVILNKYYATQDQFNENNSGALPIPNHVVLNHLVTSSIKHNTLCVA--SIV 95
Query: 195 RFLAKYVTVVLYKSMQ 210
R+ KYVT +LY ++
Sbjct: 96 RYKQKYVTQILYTPIE 111
>pdb|4AEF|A Chain A, The Crystal Structure Of Thermostable Amylase From The
Pyrococcus
pdb|4AEF|B Chain B, The Crystal Structure Of Thermostable Amylase From The
Pyrococcus
Length = 645
Score = 34.7 bits (78), Expect = 0.038, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 52 LQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAPDLP 87
+++ GK++ I LP GV+ Y F +DG + PD P
Sbjct: 46 MEQEGKNWKIKIALPEGVWHYAFSIDGKFVLDPDNP 81
>pdb|3NME|A Chain A, Structure Of A Plant Phosphatase
pdb|3NME|B Chain B, Structure Of A Plant Phosphatase
Length = 294
Score = 30.8 bits (68), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 36 EVAVEGSWDNWKTRIALQ-RSGKDFTIMKV-LPSGVYQYRFLVDGLWKYAPDLPSTQ-DD 92
V + G W RI L G F I+K LP G ++Y++++DG W + P +
Sbjct: 183 RVEISGLDIGWGQRIPLTLGKGTGFWILKRELPEGQFEYKYIIDGEWTHNEAEPFIGPNK 242
Query: 93 DGNVYN 98
DG+ N
Sbjct: 243 DGHTNN 248
>pdb|3AC0|A Chain A, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|B Chain B, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|C Chain C, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|D Chain D, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
Length = 845
Score = 29.3 bits (64), Expect = 1.8, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 88 STQDDDGNVYNILDLQEYVPDDLESISSFEPPQSPETSYNNLQLTAE 134
+T+D D V +L + ++V D+LE E PE++ NN + T++
Sbjct: 267 TTEDVDDRVRQVLKMIKFVVDNLEKTGIVE--NGPESTSNNTKETSD 311
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 28.5 bits (62), Expect = 2.8, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 117 EPPQSPETSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYME 160
+PP P+ S N + F + PP++ P Q + N+ S E
Sbjct: 615 QPPYKPKASGRNAENFDRFFTRHPPVLXPPDQEVIRNIDQSEFE 658
>pdb|2OOX|A Chain A, Crystal Structure Of The Adenylate Sensor From
Amp-activated Protein Kinase Complexed With Amp
pdb|2OOX|C Chain C, Crystal Structure Of The Adenylate Sensor From
Amp-activated Protein Kinase Complexed With Amp
pdb|2OOY|A Chain A, Crystal Structure Of The Adenylate Sensor From Amp-
Activated Protein Kinase Complexed With Atp
pdb|2OOY|C Chain C, Crystal Structure Of The Adenylate Sensor From Amp-
Activated Protein Kinase Complexed With Atp
pdb|2QR1|A Chain A, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp
pdb|2QR1|C Chain C, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp
pdb|2QRC|A Chain A, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Amp
pdb|2QRC|C Chain C, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Amp
pdb|2QRD|A Chain A, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Atp
pdb|2QRD|C Chain C, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Atp
pdb|2QRE|A Chain A, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With
5-Aminoimidazole-4-Carboxamide 1-Beta-D- Ribofuranotide
(Zmp)
pdb|2QRE|C Chain C, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With
5-Aminoimidazole-4-Carboxamide 1-Beta-D- Ribofuranotide
(Zmp)
Length = 137
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 51 ALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEY 105
ALQR+G FT+ K + + + W ++P + + N Y ++LQ Y
Sbjct: 33 ALQRAGAQFTVPKPVNGKYRSDMYTIKSRW----EIPHCKREGKNTYAYIELQLY 83
>pdb|3ABZ|A Chain A, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|B Chain B, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|C Chain C, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|D Chain D, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
Length = 845
Score = 27.7 bits (60), Expect = 4.6, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 88 STQDDDGNVYNILDLQEYVPDDLESISSFEPPQSPETSYNNLQLTAE 134
+T+D D V +L ++V D+LE E PE++ NN + T++
Sbjct: 267 TTEDVDDRVRQVLKXIKFVVDNLEKTGIVE--NGPESTSNNTKETSD 311
>pdb|3ASU|A Chain A, Crystal Structure Of Serine Dehydrogenase From Escherichia
Coli
pdb|3ASU|B Chain B, Crystal Structure Of Serine Dehydrogenase From Escherichia
Coli
pdb|3ASV|A Chain A, The Closed Form Of Serine Dehydrogenase Complexed With
Nadp+
pdb|3ASV|B Chain B, The Closed Form Of Serine Dehydrogenase Complexed With
Nadp+
pdb|3ASV|C Chain C, The Closed Form Of Serine Dehydrogenase Complexed With
Nadp+
pdb|3ASV|D Chain D, The Closed Form Of Serine Dehydrogenase Complexed With
Nadp+
pdb|3ASV|E Chain E, The Closed Form Of Serine Dehydrogenase Complexed With
Nadp+
pdb|3ASV|F Chain F, The Closed Form Of Serine Dehydrogenase Complexed With
Nadp+
Length = 248
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 58/155 (37%), Gaps = 18/155 (11%)
Query: 34 GCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDD 93
G E A + S ++W+T I G + VLP V + + + A P
Sbjct: 87 GMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPYA---G 143
Query: 94 GNVYNI---------LDLQEYVPDDLESISSFEPPQSPETSYNNLQLTAEDFAKEPPLVP 144
GNVY L+L+ + ++ EP T ++N++ +D E
Sbjct: 144 GNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGDDGKAEKT--- 200
Query: 145 PHLQMTLLNVPASYMEIPPPLSR-PQHVVLNHLYM 178
Q T+ P E +S P HV +N L M
Sbjct: 201 --YQNTVALTPEDVSEAVWWVSTLPAHVNINTLEM 233
>pdb|2Y6U|A Chain A, Peroxisomal Alpha-Beta-Hydrolase Lpx1 (Yor084w) From
Saccharomyces Cerevisiae (Crystal Form Ii)
pdb|2Y6V|A Chain A, Peroxisomal Alpha-Beta-Hydrolase Lpx1 (Yor084w) From
Saccharomyces Cerevisiae (Crystal Form I)
pdb|2Y6V|B Chain B, Peroxisomal Alpha-Beta-Hydrolase Lpx1 (Yor084w) From
Saccharomyces Cerevisiae (Crystal Form I)
pdb|2Y6V|C Chain C, Peroxisomal Alpha-Beta-Hydrolase Lpx1 (Yor084w) From
Saccharomyces Cerevisiae (Crystal Form I)
Length = 398
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 95 NVYNILDLQEYVPDDLESISSFEP------PQSPETSYNNLQL-TAEDFAKEPPLV 143
N++++L L E V ++I + P PQ PE YN+L+L T + FA E V
Sbjct: 160 NLFHLLILIEPVVITRKAIGAGRPGLPPDSPQIPENLYNSLRLKTXDHFANESEYV 215
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,305,456
Number of Sequences: 62578
Number of extensions: 319459
Number of successful extensions: 567
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 543
Number of HSP's gapped (non-prelim): 21
length of query: 211
length of database: 14,973,337
effective HSP length: 95
effective length of query: 116
effective length of database: 9,028,427
effective search space: 1047297532
effective search space used: 1047297532
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)