BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028266
(211 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SCY5|KINB2_ARATH SNF1-related protein kinase regulatory subunit beta-2
OS=Arabidopsis thaliana GN=KINB2 PE=1 SV=1
Length = 289
Score = 340 bits (872), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 161/212 (75%), Positives = 186/212 (87%), Gaps = 1/212 (0%)
Query: 1 MQIPNLSWMQT-SSGYEDMGDGVGIPTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDF 59
+ IPN SWMQ+ SS YE+ + GIPTMITW H G E+AVEGSWDNWKTR LQRSGKDF
Sbjct: 78 IHIPNPSWMQSPSSLYEEASNEQGIPTMITWCHGGKEIAVEGSWDNWKTRSRLQRSGKDF 137
Query: 60 TIMKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEYVPDDLESISSFEPP 119
TIMKVLPSGVY+YRF+VDG W++AP+LP +DD GN +NILDLQ+YVP+D++SIS FEPP
Sbjct: 138 TIMKVLPSGVYEYRFIVDGQWRHAPELPLARDDAGNTFNILDLQDYVPEDIQSISGFEPP 197
Query: 120 QSPETSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQ 179
QSPE SY+NL L AED++KEPP+VPPHLQMTLLN+PA+ +IP PL RPQHV+LNHLYMQ
Sbjct: 198 QSPENSYSNLLLGAEDYSKEPPVVPPHLQMTLLNLPAANPDIPSPLPRPQHVILNHLYMQ 257
Query: 180 KGKSGPSVVALGSTHRFLAKYVTVVLYKSMQR 211
KGKSGPSVVALGSTHRFLAKYVTVVLYKS+QR
Sbjct: 258 KGKSGPSVVALGSTHRFLAKYVTVVLYKSLQR 289
>sp|Q84VQ1|KINB1_ARATH SNF1-related protein kinase regulatory subunit beta-1
OS=Arabidopsis thaliana GN=KINB1 PE=1 SV=1
Length = 283
Score = 213 bits (542), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 107/207 (51%), Positives = 144/207 (69%), Gaps = 5/207 (2%)
Query: 5 NLSWMQTSSGYEDMGDGVGIPTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKV 64
N+ W Q+ +++ + GIPT+ITW+ G +VAVEGSWDNW++R LQ+SGKD +I+ V
Sbjct: 82 NIQWNQSQRVFDNPPEQ-GIPTIITWNQGGNDVAVEGSWDNWRSRKKLQKSGKDHSILFV 140
Query: 65 LPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEYVPDDLESISSFEPPQSPET 124
LPSG+Y Y+ +VDG KY PDLP D+ GNV NILD+ +VP++ ESI FE P SP+
Sbjct: 141 LPSGIYHYKVIVDGESKYIPDLPFVADEVGNVCNILDVHNFVPENPESIVEFEAPPSPDH 200
Query: 125 SYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSG 184
SY AED+AKEP VPP L +TLL E ++PQHVVLNH+++++G +
Sbjct: 201 SYGQTLPAAEDYAKEPLAVPPQLHLTLLGT----TEETAIATKPQHVVLNHVFIEQGWTP 256
Query: 185 PSVVALGSTHRFLAKYVTVVLYKSMQR 211
S+VALG THRF +KY+TVVLYK + R
Sbjct: 257 QSIVALGLTHRFESKYITVVLYKPLTR 283
>sp|O43741|AAKB2_HUMAN 5'-AMP-activated protein kinase subunit beta-2 OS=Homo sapiens
GN=PRKAB2 PE=1 SV=1
Length = 272
Score = 123 bits (309), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 79/222 (35%), Positives = 112/222 (50%), Gaps = 31/222 (13%)
Query: 6 LSWMQTSSGYEDMGDGV-----GIPTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFT 60
+SW Q D+ D V PT+I WS G EV + GS++NW T+I L +S DF
Sbjct: 60 VSWQQ------DLEDSVKPTQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFV 113
Query: 61 IMKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEYVPDDLESISS--FEP 118
+ LP G +QY+F VDG W + P P G + N++ +++ D E + +
Sbjct: 114 AILDLPEGEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKK---SDFEVFDALKLDS 170
Query: 119 PQSPETSYNNLQ-------------LTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPL 165
+S ETS +L +E+ K PP++PPHL +LN + P L
Sbjct: 171 MESSETSCRDLSSSPPGPYGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALL 230
Query: 166 SRPQHVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYK 207
P HV+LNHLY K SV+ L +THR+ KYVT +LYK
Sbjct: 231 PEPNHVMLNHLYALSIKD--SVMVLSATHRYKKKYVTTLLYK 270
>sp|Q9QZH4|AAKB2_RAT 5'-AMP-activated protein kinase subunit beta-2 OS=Rattus norvegicus
GN=Prkab2 PE=1 SV=1
Length = 271
Score = 123 bits (308), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 73/198 (36%), Positives = 104/198 (52%), Gaps = 20/198 (10%)
Query: 25 PTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAP 84
PT+I WS G EV + GS++NW T+I L +S DF + LP G +QY+F VDG W + P
Sbjct: 77 PTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPEGEHQYKFFVDGQWVHDP 136
Query: 85 DLPSTQDDDGNVYNILDLQEYVPDDLESISS--FEPPQSPETSYNNLQ------------ 130
P G + N++ +++ D E + + +S ETS +L
Sbjct: 137 SEPVVTSQLGTINNLIHVKK---SDFEVFDALKLDSMESSETSCRDLSSSPPGPYGQEMY 193
Query: 131 -LTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVA 189
+E+ K PP++PPHL +LN + P L P HV+LNHLY K SV+
Sbjct: 194 VFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYALSTKD--SVMV 251
Query: 190 LGSTHRFLAKYVTVVLYK 207
L +THR+ KYVT +LYK
Sbjct: 252 LSATHRYKKKYVTTLLYK 269
>sp|Q6PAM0|AAKB2_MOUSE 5'-AMP-activated protein kinase subunit beta-2 OS=Mus musculus
GN=Prkab2 PE=1 SV=1
Length = 271
Score = 122 bits (307), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/198 (36%), Positives = 104/198 (52%), Gaps = 20/198 (10%)
Query: 25 PTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAP 84
PT+I WS G EV + GS++NW T+I L +S DF + LP G +QY+F VDG W + P
Sbjct: 77 PTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPEGEHQYKFFVDGQWVHDP 136
Query: 85 DLPSTQDDDGNVYNILDLQEYVPDDLESISS--FEPPQSPETSYNNLQ------------ 130
P G + N++ +++ D E + + +S ETS +L
Sbjct: 137 SEPVVTSQLGTINNLIHVKK---SDFEVFDALKLDSMESSETSCRDLSSSPPGPYGQEMY 193
Query: 131 -LTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVA 189
+E+ K PP++PPHL +LN + P L P HV+LNHLY K SV+
Sbjct: 194 VFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYALSIKD--SVMV 251
Query: 190 LGSTHRFLAKYVTVVLYK 207
L +THR+ KYVT +LYK
Sbjct: 252 LSATHRYKKKYVTTLLYK 269
>sp|Q9R078|AAKB1_MOUSE 5'-AMP-activated protein kinase subunit beta-1 OS=Mus musculus
GN=Prkab1 PE=1 SV=2
Length = 270
Score = 110 bits (274), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 73/212 (34%), Positives = 104/212 (49%), Gaps = 14/212 (6%)
Query: 6 LSWMQTSSGYEDMGDGVGIPTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVL 65
L+W Q D PT+ W+ G EV + GS++NW +++ L RS +F + L
Sbjct: 61 LAW-QHDLEANDKAPAQARPTVFRWTGGGKEVYLSGSFNNW-SKLPLTRSQNNFVAILDL 118
Query: 66 PSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQE--------YVPDDLESISSFE 117
P G +QY+F VDG W + P P G V NI+ +++ + D + E
Sbjct: 119 PEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDFEVFDALMVDSQKCSDVSE 178
Query: 118 PPQSPETSYNNLQLTA--EDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNH 175
SP Y+ + E+ K PP++PPHL +LN P L P HV+LNH
Sbjct: 179 LSSSPPGPYHQEPYMSKPEERFKAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLNH 238
Query: 176 LYMQKGKSGPSVVALGSTHRFLAKYVTVVLYK 207
LY K G V+ L +THR+ KYVT +LYK
Sbjct: 239 LYALSIKDG--VMVLSATHRYKKKYVTTLLYK 268
>sp|P80386|AAKB1_RAT 5'-AMP-activated protein kinase subunit beta-1 OS=Rattus norvegicus
GN=Prkab1 PE=1 SV=4
Length = 270
Score = 109 bits (273), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 99/193 (51%), Gaps = 13/193 (6%)
Query: 25 PTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAP 84
PT+ W+ G EV + GS++NW +++ L RS +F + LP G +QY+F VDG W + P
Sbjct: 79 PTVFRWTGGGKEVYLSGSFNNW-SKLPLTRSQNNFVAILDLPEGEHQYKFFVDGQWTHDP 137
Query: 85 DLPSTQDDDGNVYNILDLQE--------YVPDDLESISSFEPPQSPETSYNNLQLTA--E 134
P G V NI+ +++ + D + E SP Y+ + E
Sbjct: 138 SEPIVTSQLGTVNNIIQVKKTDFEVFDALMVDSQKCSDVSELSSSPPGPYHQEPYISKPE 197
Query: 135 DFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGSTH 194
+ K PP++PPHL +LN P L P HV+LNHLY K G V+ L +TH
Sbjct: 198 ERFKAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLNHLYALSIKDG--VMVLSATH 255
Query: 195 RFLAKYVTVVLYK 207
R+ KYVT +LYK
Sbjct: 256 RYKKKYVTTLLYK 268
>sp|Q5BIS9|AAKB1_BOVIN 5'-AMP-activated protein kinase subunit beta-1 OS=Bos taurus
GN=PRKAB1 PE=2 SV=3
Length = 270
Score = 109 bits (273), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 104/212 (49%), Gaps = 14/212 (6%)
Query: 6 LSWMQTSSGYEDMGDGVGIPTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVL 65
L+W Q D PT+ W+ G EV + GS++NW +++ L RS +F + L
Sbjct: 61 LAW-QHDLEVNDKAPAQARPTVFRWTGGGKEVYLSGSFNNW-SKLPLTRSHNNFVAILDL 118
Query: 66 PSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQE--------YVPDDLESISSFE 117
P G +QY+F VDG W + P P G V N++ +++ + D + E
Sbjct: 119 PEGEHQYKFFVDGQWTHDPSEPVVTSQLGTVNNVIQVKKTDFEVFDALMVDSQKCSDVSE 178
Query: 118 PPQSPETSYNNLQLTA--EDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNH 175
SP Y+ + E+ K PP++PPHL +LN P L P HV+LNH
Sbjct: 179 LSSSPPGPYHQEPYISKPEERFKAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLNH 238
Query: 176 LYMQKGKSGPSVVALGSTHRFLAKYVTVVLYK 207
LY K G V+ L +THR+ KYVT +LYK
Sbjct: 239 LYALSIKDG--VMVLSATHRYKKKYVTTLLYK 268
>sp|Q5R801|AAKB1_PONAB 5'-AMP-activated protein kinase subunit beta-1 OS=Pongo abelii
GN=PRKAB1 PE=2 SV=3
Length = 270
Score = 109 bits (273), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 103/212 (48%), Gaps = 14/212 (6%)
Query: 6 LSWMQTSSGYEDMGDGVGIPTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVL 65
L+W Q D PT+ W+ G EV + GS++NW +++ L RS +F + L
Sbjct: 61 LAW-QRDLEVNDKAPAQARPTVFRWTGGGKEVYLSGSFNNW-SKLPLTRSHNNFVAILDL 118
Query: 66 PSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQE--------YVPDDLESISSFE 117
P G +QY+F VDG W + P P G V NI+ +++ + D + E
Sbjct: 119 PEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDFEVFDALMVDSQKCSDVSE 178
Query: 118 PPQSPETSYNNLQLTA--EDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNH 175
SP Y+ E+ + PP++PPHL +LN P L P HV+LNH
Sbjct: 179 LSSSPPGPYHQEPYVCKPEERFRAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLNH 238
Query: 176 LYMQKGKSGPSVVALGSTHRFLAKYVTVVLYK 207
LY K G V+ L +THR+ KYVT +LYK
Sbjct: 239 LYALSIKDG--VMVLSATHRYKKKYVTTLLYK 268
>sp|Q9Y478|AAKB1_HUMAN 5'-AMP-activated protein kinase subunit beta-1 OS=Homo sapiens
GN=PRKAB1 PE=1 SV=4
Length = 270
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 103/212 (48%), Gaps = 14/212 (6%)
Query: 6 LSWMQTSSGYEDMGDGVGIPTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVL 65
L+W Q D PT+ W+ G EV + GS++NW +++ L RS +F + L
Sbjct: 61 LAW-QHDLEVNDKAPAQARPTVFRWTGGGKEVYLSGSFNNW-SKLPLTRSHNNFVAILDL 118
Query: 66 PSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQE--------YVPDDLESISSFE 117
P G +QY+F VDG W + P P G V NI+ +++ + D + E
Sbjct: 119 PEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDFEVFDALMVDSQKCSDVSE 178
Query: 118 PPQSPETSYNNLQLTA--EDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNH 175
SP Y+ E+ + PP++PPHL +LN P L P HV+LNH
Sbjct: 179 LSSSPPGPYHQEPYVCKPEERFRAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLNH 238
Query: 176 LYMQKGKSGPSVVALGSTHRFLAKYVTVVLYK 207
LY K G V+ L +THR+ KYVT +LYK
Sbjct: 239 LYALSIKDG--VMVLSATHRYKKKYVTTLLYK 268
>sp|Q9ZUU8|KINB3_ARATH SNF1-related protein kinase regulatory subunit beta-3
OS=Arabidopsis thaliana GN=KINB3 PE=1 SV=1
Length = 114
Score = 96.7 bits (239), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 55/107 (51%), Positives = 72/107 (67%), Gaps = 6/107 (5%)
Query: 107 PDDLE--SISSFEPPQSPETSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPP 164
PDD E ++ FE P SP +SYNN+ + ED ++PP VPPHLQ +LL S ME+
Sbjct: 6 PDDHEDTTVVGFEVPVSPVSSYNNVYSSTEDETRDPPAVPPHLQHSLLGNQGS-MEL--- 61
Query: 165 LSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSMQR 211
PQ+VVLNHLY++ + SVVALG +HRF K+VTVV+YK +QR
Sbjct: 62 AYAPQNVVLNHLYIENRDAPRSVVALGFSHRFRTKFVTVVIYKPVQR 108
>sp|P78789|YC63_SCHPO Uncharacterized protein C1919.03c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC1919.03c PE=1 SV=2
Length = 298
Score = 95.1 bits (235), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 102/212 (48%), Gaps = 34/212 (16%)
Query: 21 GVGIPTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLW 80
G +PT+I W G V V GS+ WK +I L +S +D+T++ L G +++FLVDG+W
Sbjct: 96 GPCVPTIIRWRGGGEVVYVTGSFSRWKKKIQLLKS-EDYTVLLQLRPGTQRFKFLVDGIW 154
Query: 81 KYAPDLPSTQDDDGNVYNILDLQ------EYVPDDLESISSFEPPQSPETSYNNLQLTAE 134
+ D P+ D +GN+YN L+++ + + L + + P + S E
Sbjct: 155 CCSSDFPTATDAEGNLYNYLEVEANEKLGASIDERLSQVHTDLPMEEKSES--------E 206
Query: 135 DFAKEPP--LVPPHLQ---------------MTLLNVPASYMEIPPPLSRPQHVVLNHLY 177
++ E P L LQ +LN +Y E L P HV+LNHL
Sbjct: 207 QYSTEIPAFLTSNTLQELKLPKPPSLPPHLEKCILNSNTAYKEDQSVLPNPNHVLLNHLA 266
Query: 178 MQKGKSGPSVVALGSTHRFLAKYVTVVLYKSM 209
+ G V+AL +T R+ KYVT ++K+
Sbjct: 267 AANTQLG--VLALSATTRYHRKYVTTAMFKNF 296
>sp|P80387|AAKB1_PIG 5'-AMP-activated protein kinase subunit beta-1 (Fragment) OS=Sus
scrofa GN=PRKAB1 PE=1 SV=1
Length = 122
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 6 LSWMQTSSGYEDMGDGVGIPTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVL 65
L+W Q D PT+ W+ G EV + GS++NW +++ L RS +F + L
Sbjct: 26 LAW-QHDLEVNDKASAQARPTVFRWTGGGKEVYLSGSFNNW-SKLPLTRSHNNFVAILDL 83
Query: 66 PSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQE 104
P G +QY+FLVDG W + P P G V NI+ +++
Sbjct: 84 PEGEHQYKFLVDGQWTHDPSEPVVTSQLGTVNNIIQVKK 122
>sp|P34164|SIP2_YEAST SNF1 protein kinase subunit beta-2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SIP2 PE=1 SV=3
Length = 415
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/265 (25%), Positives = 104/265 (39%), Gaps = 73/265 (27%)
Query: 10 QTSSGYEDMGDGVGIPTMITWSHDGCEVAVEGSWDNWKTRIAL----QRSGKDFTIMKVL 65
+ S G ++ + +P I W G +V V GS+ W+ I L +G +++L
Sbjct: 150 EASGGPSEIKSSLMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLL 209
Query: 66 PSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQ--EYVPDDLESISSFE-----P 118
P G +++RF+VD + + LP+ D GN N ++++ E P + E I S E P
Sbjct: 210 P-GTHRFRFIVDNELRVSDFLPTATDQMGNFVNYIEVRQPEKNPTN-EKIRSKEADSMRP 267
Query: 119 PQSPETSYNNLQLTA-------------EDFAKEPPL----------------------- 142
P S +S LQ+ ED + PPL
Sbjct: 268 PTSDRSSI-ALQIGKDPDDFGDGYTRFHEDLSPRPPLEYTTDIPAVFTDPSVMERYYYTL 326
Query: 143 ----------------VPPHLQMTLLNVPASYMEI-----PPPLSRPQHVVLNHLYMQKG 181
+PP L+ +LN + + L P HVVLNHL
Sbjct: 327 DRQQSNTDTSWLTPPQLPPQLENVILNKYYATQDQFNENNSGALPIPNHVVLNHLVTSSI 386
Query: 182 KSGPSVVALGSTHRFLAKYVTVVLY 206
K + + + S R+ KYVT +LY
Sbjct: 387 KH--NTLCVASIVRYKQKYVTQILY 409
>sp|Q04739|GAL83_YEAST SNF1 protein kinase subunit beta-3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=GAL83 PE=1 SV=1
Length = 417
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 19 GDGVGIPTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKV---LPSGVYQYRFL 75
G + P ITW G +V V GS+ W+ I L +M V LP G +++RF+
Sbjct: 157 GRAMMFPVDITWQQGGNKVYVTGSFTGWRKMIGLVPVPGQPGLMHVKLQLPPGTHRFRFI 216
Query: 76 VDGLWKYAPDLPSTQDDDGNVYNILDL 102
VD +++ LP+ D GN N +++
Sbjct: 217 VDNELRFSDYLPTATDQMGNFVNYMEV 243
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 140 PPLVPPHLQMTLLN--VPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFL 197
PP +PPHL+ +LN A L P HV+LNHL K + + + S R+
Sbjct: 347 PPQLPPHLENVILNSYSNAQTDNTSGALPIPNHVILNHLATSSIKH--NTLCVASIVRYK 404
Query: 198 AKYVTVVLYKSMQ 210
KYVT +LY +Q
Sbjct: 405 QKYVTQILYTPLQ 417
>sp|F4J117|LSF1_ARATH Phosphoglucan phosphatase LSF1, chloroplastic OS=Arabidopsis
thaliana GN=LSF1 PE=1 SV=1
Length = 591
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Query: 17 DMGDGVGIPT---MITWS-HDGCEVAVEGSW-DNWKTRI-ALQRSGKDFTIMKVLPSGVY 70
D G G PT W+ H+G EV + G + NWK I A + G F L G Y
Sbjct: 445 DDGKHDGTPTHSVTFVWNGHEGEEVLLVGDFTGNWKEPIKATHKGGPRFETEVRLTQGKY 504
Query: 71 QYRFLVDGLWKYAPDLPSTQDDDGNVYNIL 100
Y+++++G W+++ P+ +DD GN NI+
Sbjct: 505 YYKYIINGDWRHSATSPTERDDRGNTNNII 534
>sp|Q944A6|SNF4_ARATH Sucrose nonfermenting 4-like protein OS=Arabidopsis thaliana
GN=SNF4 PE=1 SV=1
Length = 487
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 3/97 (3%)
Query: 7 SWMQTSSGYEDMGDGVGIPTMITWSHDGCEVAVEGSWDNWKTRIA---LQRSGKDFTIMK 63
S + +S G + PT W + G V + GS+ W + L+ F ++
Sbjct: 4 STLDSSRGNSAASGQLLTPTRFVWPYGGRRVFLSGSFTRWTEHVPMSPLEGCPTVFQVIC 63
Query: 64 VLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNIL 100
L G +QY+F VDG W++ P + G V I
Sbjct: 64 NLTPGYHQYKFFVDGEWRHDEHQPFVSGNGGVVNTIF 100
>sp|B3LFN4|SIP1_YEAS1 SNF1 protein kinase subunit beta-1 OS=Saccharomyces cerevisiae
(strain RM11-1a) GN=SIP1 PE=3 SV=2
Length = 815
Score = 34.3 bits (77), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 65 LPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYN 98
LP+G+Y+ +F ++G+ ++ LP+ D +GN N
Sbjct: 523 LPAGIYRLQFSINGILTHSNFLPTATDSEGNFVN 556
>sp|E7Q4T7|CRP1_YEASB Cruciform DNA-recognizing protein 1 OS=Saccharomyces cerevisiae
(strain FostersB) GN=CRP1 PE=3 SV=1
Length = 465
Score = 34.3 bits (77), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 28 ITWSHDGCEVAVEGSWDNWKTRIALQRSGK-DFTIMKVLP------SGVYQYRFLVDGLW 80
+W +V + G++D+W+ + L ++ K +F I +P +Q++F+VDG+W
Sbjct: 11 FSWPAGPKDVILTGTFDDWRGTLPLVKTAKGNFEI--TMPVKLXNKDDTFQFKFIVDGVW 68
Query: 81 KYAPDLPSTQDDDGNVYNILDLQEYV 106
+ +G N L + + V
Sbjct: 69 CVSDSYKKEHVSEGIENNFLQITDLV 94
>sp|A6ZZ19|SIP1_YEAS7 SNF1 protein kinase subunit beta-1 OS=Saccharomyces cerevisiae
(strain YJM789) GN=SIP1 PE=3 SV=2
Length = 815
Score = 34.3 bits (77), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 65 LPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYN 98
LP+G+Y+ +F ++G+ ++ LP+ D +GN N
Sbjct: 523 LPAGIYRLQFSINGILTHSNFLPTATDSEGNFVN 556
>sp|P32578|SIP1_YEAST SNF1 protein kinase subunit beta-1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SIP1 PE=1 SV=2
Length = 815
Score = 34.3 bits (77), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 65 LPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYN 98
LP+G+Y+ +F ++G+ ++ LP+ D +GN N
Sbjct: 523 LPAGIYRLQFSINGILTHSNFLPTATDSEGNFVN 556
>sp|E7NIP0|CRP1_YEASO Cruciform DNA-recognizing protein 1 OS=Saccharomyces cerevisiae
(strain FostersO) GN=CRP1 PE=3 SV=2
Length = 465
Score = 34.3 bits (77), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 28 ITWSHDGCEVAVEGSWDNWKTRIALQRSGK-DFTIMKVLP------SGVYQYRFLVDGLW 80
+W +V + G++D+W+ + L ++ K +F I +P +Q++F+VDG+W
Sbjct: 11 FSWPAGPKDVILTGTFDDWRGTLPLVKTAKGNFEI--TMPVKLANKDDTFQFKFIVDGVW 68
Query: 81 KYAPDLPSTQDDDGNVYNILDLQEYV 106
+ +G N L + + V
Sbjct: 69 CVSDSYKKEHVSEGIENNFLQITDLV 94
>sp|C7GJZ2|CRP1_YEAS2 Cruciform DNA-recognizing protein 1 OS=Saccharomyces cerevisiae
(strain JAY291) GN=CRP1 PE=3 SV=1
Length = 465
Score = 34.3 bits (77), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 28 ITWSHDGCEVAVEGSWDNWKTRIALQRSGK-DFTIMKVLP------SGVYQYRFLVDGLW 80
+W +V + G++D+W+ + L ++ K +F I +P +Q++F+VDG+W
Sbjct: 11 FSWPAGPKDVILTGTFDDWRGTLPLVKTAKGNFEI--TMPVKLANKDDTFQFKFIVDGVW 68
Query: 81 KYAPDLPSTQDDDGNVYNILDLQEYV 106
+ +G N L + + V
Sbjct: 69 CVSDSYKKEHVSEGIENNFLQITDLV 94
>sp|P38845|CRP1_YEAST Cruciform DNA-recognizing protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CRP1 PE=1 SV=1
Length = 465
Score = 34.3 bits (77), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 28 ITWSHDGCEVAVEGSWDNWKTRIALQRSGK-DFTIMKVLP------SGVYQYRFLVDGLW 80
+W +V + G++D+W+ + L ++ K +F I +P +Q++F+VDG+W
Sbjct: 11 FSWPAGPKDVILTGTFDDWRGTLPLVKTAKGNFEI--TMPVKLANKDDTFQFKFIVDGVW 68
Query: 81 KYAPDLPSTQDDDGNVYNILDLQEYV 106
+ +G N L + + V
Sbjct: 69 CVSDSYKKEHVSEGIENNFLQITDLV 94
>sp|E7KPJ0|CRP1_YEASL Cruciform DNA-recognizing protein 1 OS=Saccharomyces cerevisiae
(strain Lalvin QA23) GN=CRP1 PE=3 SV=2
Length = 465
Score = 34.3 bits (77), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 28 ITWSHDGCEVAVEGSWDNWKTRIALQRSGK-DFTIMKVLP------SGVYQYRFLVDGLW 80
+W +V + G++D+W+ + L ++ K +F I +P +Q++F+VDG+W
Sbjct: 11 FSWPAGPKDVILTGTFDDWRGTLPLVKTAKGNFEI--TMPVKLANKDDTFQFKFIVDGVW 68
Query: 81 KYAPDLPSTQDDDGNVYNILDLQEYV 106
+ +G N L + + V
Sbjct: 69 CVSDSYKKEHVSEGIENNFLQITDLV 94
>sp|C8Z9U3|CRP1_YEAS8 Cruciform DNA-recognizing protein 1 OS=Saccharomyces cerevisiae
(strain Lalvin EC1118 / Prise de mousse) GN=CRP1 PE=3
SV=1
Length = 465
Score = 34.3 bits (77), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 28 ITWSHDGCEVAVEGSWDNWKTRIALQRSGK-DFTIMKVLP------SGVYQYRFLVDGLW 80
+W +V + G++D+W+ + L ++ K +F I +P +Q++F+VDG+W
Sbjct: 11 FSWPAGPKDVILTGTFDDWRGTLPLVKTAKGNFEI--TMPVKLANKDDTFQFKFIVDGVW 68
Query: 81 KYAPDLPSTQDDDGNVYNILDLQEYV 106
+ +G N L + + V
Sbjct: 69 CVSDSYKKEHVSEGIENNFLQITDLV 94
>sp|A6ZT54|CRP1_YEAS7 Cruciform DNA-recognizing protein 1 OS=Saccharomyces cerevisiae
(strain YJM789) GN=CRP1 PE=3 SV=1
Length = 465
Score = 34.3 bits (77), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 28 ITWSHDGCEVAVEGSWDNWKTRIALQRSGK-DFTIMKVLP------SGVYQYRFLVDGLW 80
+W +V + G++D+W+ + L ++ K +F I +P +Q++F+VDG+W
Sbjct: 11 FSWPAGPKDVILTGTFDDWRGTLPLVKTAKGNFEI--TMPVKLANKDDTFQFKFIVDGVW 68
Query: 81 KYAPDLPSTQDDDGNVYNILDLQEYV 106
+ +G N L + + V
Sbjct: 69 CVSDSYKKEHVSEGIENNFLQITDLV 94
>sp|B3LSR0|CRP1_YEAS1 Cruciform DNA-recognizing protein 1 OS=Saccharomyces cerevisiae
(strain RM11-1a) GN=CRP1 PE=3 SV=1
Length = 465
Score = 33.9 bits (76), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 28 ITWSHDGCEVAVEGSWDNWKTRIALQRSGK-DFTIMKVLP------SGVYQYRFLVDGLW 80
+W +V + G++D+W+ + L ++ K +F I +P +Q++F+VDG+W
Sbjct: 11 FSWPAGPKDVILTGTFDDWRGTLPLVKTAKGNFEI--TMPVKLANKDDTFQFKFIVDGVW 68
Query: 81 KYAPDLPSTQDDDGNVYNILDLQEYV 106
+ +G N L + + V
Sbjct: 69 CVSDSYKKEHVSEGIENNFLQITDLV 94
>sp|E7LVH4|CRP1_YEASV Cruciform DNA-recognizing protein 1 OS=Saccharomyces cerevisiae
(strain VIN 13) GN=CRP1 PE=3 SV=2
Length = 465
Score = 33.9 bits (76), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 28 ITWSHDGCEVAVEGSWDNWKTRIALQRSGK-DFTIMKVLP------SGVYQYRFLVDGLW 80
+W +V + G++D+W+ + L ++ K +F I +P +Q++F+VDG+W
Sbjct: 11 FSWPAGPKDVILTGTFDDWRGTLPLVKTAKGNFEI--TMPVKLANKDDTFQFKFIVDGVW 68
Query: 81 KYAPDLPSTQDDDGNVYNILDLQEYV 106
+ +G N L + + V
Sbjct: 69 CVSDSYKKEHVSEGIENNFLQITDLV 94
>sp|E7KDM2|CRP1_YEASA Cruciform DNA-recognizing protein 1 OS=Saccharomyces cerevisiae
(strain AWRI796) GN=CRP1 PE=3 SV=2
Length = 465
Score = 33.9 bits (76), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 28 ITWSHDGCEVAVEGSWDNWKTRIALQRSGK-DFTIMKVLP------SGVYQYRFLVDGLW 80
+W +V + G++D+W+ + L ++ K +F I +P +Q++F+VDG+W
Sbjct: 11 FSWPAGPKDVILTGTFDDWRGTLPLVKTAKGNFEI--TMPVKLANKDDTFQFKFIVDGVW 68
Query: 81 KYAPDLPSTQDDDGNVYNILDLQEYV 106
+ +G N L + + V
Sbjct: 69 CVSDSYKKEHVSEGIENNFLQITDLV 94
>sp|Q9Y6N6|LAMC3_HUMAN Laminin subunit gamma-3 OS=Homo sapiens GN=LAMC3 PE=1 SV=3
Length = 1575
Score = 32.7 bits (73), Expect = 2.1, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 119 PQSPETSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYM 178
P+ E ++ LQ T+ED A PPL P H Q L N+ + + + P S V L + +
Sbjct: 600 PREVELRFH-LQETSEDVA--PPLPPFHFQRLLANLTSLRLRVSPGPSPAGPVFLTEVRL 656
Query: 179 QKGKSGPS 186
+ G S
Sbjct: 657 TSARPGLS 664
>sp|P52979|GLGB_RHIRD 1,4-alpha-glucan branching enzyme GlgB OS=Rhizobium radiobacter
GN=glgB PE=3 SV=2
Length = 734
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 20 DGVGIPTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVY--QYRFLVD 77
+GV W+ +G V+V G ++NW R + R KD I ++ VY Y+F +
Sbjct: 142 EGVEGFHFAVWAPNGRRVSVVGDFNNWDGRRHVMRFRKDTGIWEIFAPDVYACAYKFEIL 201
Query: 78 G 78
G
Sbjct: 202 G 202
>sp|Q17VZ5|SYT_HELAH Threonine--tRNA ligase OS=Helicobacter acinonychis (strain Sheeba)
GN=thrS PE=3 SV=1
Length = 612
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 14/116 (12%)
Query: 39 VEGSWDNWK-----TRIALQRSG----KDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPST 89
+ G +DN+K T I Q G +KV S ++ YR L ++Y +
Sbjct: 282 ISGHYDNYKENMYFTTIDEQEYGIKPMNCVGHIKVYQSALHSYRDLPLRFYEYG--VVHR 339
Query: 90 QDDDGNVYNILDLQEYVPDDLESISSFEPPQSPETS---YNNLQLTAEDFAKEPPL 142
+ G ++ +L ++E+ DD SFE QS ++ + + + A DF+ E L
Sbjct: 340 HEKSGVLHGLLRVREFTQDDAHIFCSFEQIQSEVSAILDFTHKIMKAFDFSYEMEL 395
>sp|B2URV1|SYT_HELPS Threonine--tRNA ligase OS=Helicobacter pylori (strain Shi470)
GN=thrS PE=3 SV=1
Length = 612
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 14/116 (12%)
Query: 39 VEGSWDNWK-----TRIALQRSG----KDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPST 89
+ G +DN+K T I Q G +KV S ++ YR L ++Y +
Sbjct: 282 ISGHYDNYKENMYFTTIDEQEYGIKPMNCVGHIKVYQSALHSYRDLPLRFYEYG--VVHR 339
Query: 90 QDDDGNVYNILDLQEYVPDDLESISSFEPPQSPETS---YNNLQLTAEDFAKEPPL 142
+ G ++ +L ++E+ DD SFE QS ++ + + + A DF+ E L
Sbjct: 340 HEKSGVLHGLLRVREFTQDDAHIFCSFEQIQSEVSAILDFTHKIMQAFDFSYEMEL 395
>sp|B5Z9Q1|SYT_HELPG Threonine--tRNA ligase OS=Helicobacter pylori (strain G27) GN=thrS
PE=3 SV=1
Length = 612
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 14/116 (12%)
Query: 39 VEGSWDNWK-----TRIALQRSG----KDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPST 89
+ G +DN+K T I Q G +KV S ++ YR L ++Y +
Sbjct: 282 ISGHYDNYKENMYFTTIDEQEYGIKPMNCVGHIKVYQSALHSYRDLPLRFYEYG--VVHR 339
Query: 90 QDDDGNVYNILDLQEYVPDDLESISSFEPPQSPETS---YNNLQLTAEDFAKEPPL 142
+ G ++ +L ++E+ DD SFE QS ++ + + + A DF+ E L
Sbjct: 340 HEKSGVLHGLLRVREFTQDDAHIFCSFEQIQSEVSAILDFTHKIMQAFDFSYEMEL 395
>sp|B6JPM2|SYT_HELP2 Threonine--tRNA ligase OS=Helicobacter pylori (strain P12) GN=thrS
PE=3 SV=1
Length = 612
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 14/116 (12%)
Query: 39 VEGSWDNWK-----TRIALQRSG----KDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPST 89
+ G +DN+K T I Q G +KV S ++ YR L ++Y +
Sbjct: 282 ISGHYDNYKENMYFTTIDEQEYGIKPMNCVGHIKVYQSALHSYRDLPLRFYEYG--VVHR 339
Query: 90 QDDDGNVYNILDLQEYVPDDLESISSFEPPQSPETS---YNNLQLTAEDFAKEPPL 142
+ G ++ +L ++E+ DD SFE QS ++ + + + A DF+ E L
Sbjct: 340 HEKSGVLHGLLRVREFTQDDAHIFCSFEQIQSEVSAILDFTHKIMQAFDFSYEMEL 395
>sp|Q1CV33|SYT_HELPH Threonine--tRNA ligase OS=Helicobacter pylori (strain HPAG1)
GN=thrS PE=3 SV=1
Length = 612
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 14/116 (12%)
Query: 39 VEGSWDNWK-----TRIALQRSG----KDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPST 89
+ G +DN+K T I Q G +KV S ++ YR L ++Y +
Sbjct: 282 ISGHYDNYKENMYFTTIDEQEYGIKPMNCVGHIKVYQSALHSYRDLPLRFYEYG--VVHR 339
Query: 90 QDDDGNVYNILDLQEYVPDDLESISSFEPPQSPETS---YNNLQLTAEDFAKEPPL 142
+ G ++ +L ++E+ DD SFE QS ++ + + + A DF+ E L
Sbjct: 340 HEKSGVLHGLLRVREFTQDDAHIFCSFEQIQSEVSAILDFTHKIMQAFDFSYEMEL 395
>sp|P56071|SYT_HELPY Threonine--tRNA ligase OS=Helicobacter pylori (strain ATCC 700392 /
26695) GN=thrS PE=3 SV=1
Length = 612
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 14/116 (12%)
Query: 39 VEGSWDNWK-----TRIALQRSG----KDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPST 89
+ G +DN+K T I Q G +KV S ++ YR L ++Y +
Sbjct: 282 ISGHYDNYKENMYFTTIDEQEYGIKPMNCVGHIKVYQSALHSYRDLPLRFYEYG--VVHR 339
Query: 90 QDDDGNVYNILDLQEYVPDDLESISSFEPPQSPETS---YNNLQLTAEDFAKEPPL 142
+ G ++ +L ++E+ DD SFE QS ++ + + + A DF+ E L
Sbjct: 340 HEKSGVLHGLLRVREFTQDDAHIFCSFEQIQSEVSAILDFTHKIMQAFDFSYEMEL 395
>sp|Q08582|RGYR_SULAC Reverse gyrase OS=Sulfolobus acidocaldarius (strain ATCC 33909 /
DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=rgy
PE=1 SV=3
Length = 1248
Score = 31.6 bits (70), Expect = 4.5, Method: Composition-based stats.
Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 10/108 (9%)
Query: 56 GKDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEYVPDDLES-IS 114
G+ + ++L V D +K DL + GN+ + D+Q V DD ES +S
Sbjct: 20 GRSISTYRLLLGSVCNICLEEDKEYKNIGDLIKDIEKQGNLIKLKDIQR-VLDDYESFVS 78
Query: 115 SFE-----PPQSPETSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPAS 157
F PP P+ S+ L+ E FA + PP L T + +S
Sbjct: 79 VFRRLLGFPPFGPQKSWIYRLLSGESFAI---IAPPGLGKTTFGLISS 123
>sp|Q9FEB5|DSP4_ARATH Phosphoglucan phosphatase DSP4, chloroplastic OS=Arabidopsis
thaliana GN=DSP4 PE=1 SV=1
Length = 379
Score = 31.6 bits (70), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 36 EVAVEGSWDNWKTRIALQ-RSGKDFTIMKV-LPSGVYQYRFLVDGLWKYAPDLPSTQ-DD 92
V + G W RI L G F I+K LP G ++Y++++DG W + P +
Sbjct: 268 RVEISGLDIGWGQRIPLTLDKGTGFWILKRELPEGQFEYKYIIDGEWTHNEAEPFIGPNK 327
Query: 93 DGNVYN 98
DG+ N
Sbjct: 328 DGHTNN 333
>sp|P0DD35|C5AP_STRPQ C5a peptidase OS=Streptococcus pyogenes serotype M3 (strain SSI-1)
GN=scpA PE=3 SV=1
Length = 1169
Score = 31.6 bits (70), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 11/90 (12%)
Query: 103 QEYVPDDLESISSFE--PPQSPETSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYME 160
Q V ++ S SS E PPQ+P+ + + A D A + P ++PA+ E
Sbjct: 50 QTAVSEEAPSSSSKETNPPQTPDDAEETVADKANDLAPQAP-------AKTADIPATSKE 102
Query: 161 IPPPLSRPQHVVLNHLYMQKGKSGPSVVAL 190
L+ P HV L + GK +VVA+
Sbjct: 103 TIRDLNDPSHV--KTLQEKAGKGAGTVVAV 130
>sp|P0DD34|C5AP_STRP3 C5a peptidase OS=Streptococcus pyogenes serotype M3 (strain ATCC
BAA-595 / MGAS315) GN=scpA PE=3 SV=1
Length = 1169
Score = 31.6 bits (70), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 11/90 (12%)
Query: 103 QEYVPDDLESISSFE--PPQSPETSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYME 160
Q V ++ S SS E PPQ+P+ + + A D A + P ++PA+ E
Sbjct: 50 QTAVSEEAPSSSSKETNPPQTPDDAEETVADKANDLAPQAP-------AKTADIPATSKE 102
Query: 161 IPPPLSRPQHVVLNHLYMQKGKSGPSVVAL 190
L+ P HV L + GK +VVA+
Sbjct: 103 TIRDLNDPSHV--KTLQEKAGKGAGTVVAV 130
>sp|Q09697|RGA8_SCHPO Rho-GTPase-activating protein 8 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rga8 PE=1 SV=1
Length = 777
Score = 30.4 bits (67), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 9/53 (16%)
Query: 107 PDDLESISSFEPPQSPETSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYM 159
PD + S+ S +SP +S+ LQ P +P + TL NVP S +
Sbjct: 684 PDSISSVRSHTAVESPRSSFEELQ---------PSEIPAESEFTLENVPTSLI 727
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.134 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,476,983
Number of Sequences: 539616
Number of extensions: 3983877
Number of successful extensions: 9256
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 9180
Number of HSP's gapped (non-prelim): 64
length of query: 211
length of database: 191,569,459
effective HSP length: 112
effective length of query: 99
effective length of database: 131,132,467
effective search space: 12982114233
effective search space used: 12982114233
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)