BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028267
(211 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q84TG1|RH57_ARATH DEAD-box ATP-dependent RNA helicase 57 OS=Arabidopsis thaliana
GN=RH57 PE=2 SV=1
Length = 541
Score = 210 bits (534), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 119/206 (57%), Positives = 153/206 (74%), Gaps = 9/206 (4%)
Query: 1 MEKGASFLFAGVSFDKKKFVTDFARFKENKESENLADDFSF-----VEGEKTDPEKAMVS 55
MEK + FLF G +F+KKKF DFA+FK + E ++ +F + E+ + EK +VS
Sbjct: 1 MEKSSYFLFGGTNFNKKKFAPDFAKFKNSTEDDDSNKKVNFFVEEEEDTEQPEAEKVIVS 60
Query: 56 FVKKRKRKSIAGETVEGFNVFKSSKQLVPAVDKEKEKVEDGP--SKAKKELNKQIERDAV 113
KKRKR+S VEGF+VFKSSK+ A K +E++ KKELN+Q+ERDA+
Sbjct: 61 -SKKRKRRSSNSVPVEGFDVFKSSKK-ARAKGKAEEQITKNEIVENPKKELNRQMERDAL 118
Query: 114 FRKKYNIHVSGANVPSPLRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSD 173
RK+Y+IHVSG N+P PL++F +LSSR+GCE Y+LRNLAELG+KEPTPIQRQAIP+LLS
Sbjct: 119 SRKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSG 178
Query: 174 RECFACAPTGSGKTLAFLCPMLMKLR 199
RECFACAPTGSGKT AF+CPML+KL+
Sbjct: 179 RECFACAPTGSGKTFAFICPMLIKLK 204
>sp|Q5K5B6|RH57_ORYSJ DEAD-box ATP-dependent RNA helicase 57 OS=Oryza sativa subsp.
japonica GN=Os07g0647900 PE=2 SV=2
Length = 540
Score = 189 bits (479), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 109/223 (48%), Positives = 142/223 (63%), Gaps = 38/223 (17%)
Query: 1 MEKG--ASFLFAGVSFDKKKFVTDFARFKENKESENLADDFSFVEGEKTDPEKAMVSFVK 58
MEK +S LFAG FD+K+F DFARF++ + ++A PEK
Sbjct: 1 MEKAKLSSALFAGTHFDRKRFAGDFARFRQGPPAPDVA------SAAAPSPEK------- 47
Query: 59 KRKRKSI----------------AGETVEGFNVFKSSKQLVPAVDKEKEKVEDGPS---- 98
KRKR+S A + VEGF+VFK D EK KVE G S
Sbjct: 48 KRKRQSKAKAKKSKKRRAEGADSASDAVEGFSVFKGLAAKKDEDDSEK-KVETGKSEDSE 106
Query: 99 --KAKKELNKQIERDAVFRKKYNIHVSGANVPSPLRTFVKLSSRFGCESYLLRNLAELGY 156
+ +KE+ ++IER A+ RKK++IH+SG NVP+PL F +L SR+GC+SYL+ NL++LG+
Sbjct: 107 VVRRRKEVEREIERAAILRKKFDIHISGQNVPAPLENFEELVSRYGCDSYLVGNLSKLGF 166
Query: 157 KEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLR 199
+EPTPIQRQAIP+LLS RECFACAPTGSGKTLAFL P+LMK++
Sbjct: 167 QEPTPIQRQAIPILLSGRECFACAPTGSGKTLAFLFPILMKIK 209
>sp|Q9Y2R4|DDX52_HUMAN Probable ATP-dependent RNA helicase DDX52 OS=Homo sapiens GN=DDX52
PE=1 SV=3
Length = 599
Score = 111 bits (278), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 114/227 (50%), Gaps = 43/227 (18%)
Query: 8 LFAGVSFDKKKFVTDFARFKENK-----ESENLADDFSFVEGEKTDP------------- 49
L AG FD ++F D ARF+ K +S + F +K+ P
Sbjct: 10 LGAGAKFDTRRFSADAARFQIGKRKYDFDSSEVLQGLDFFGNKKSVPGVCGASQTHQKPQ 69
Query: 50 --EKAMVSFVK------KRKRKSIAGETV---EGFNVFKSSKQLVPAVDKEKEKVEDGPS 98
EK S + K+KRK++ E EG + Q + +V+ K+ED
Sbjct: 70 NGEKKEESLTERKREQSKKKRKTMTSEIASQEEGATI-----QWMSSVE---AKIEDKKV 121
Query: 99 KAKKEL------NKQIERDAVFRKKYNIHVSGANVPSPLRTFVKLSSRFGCESYLLRNLA 152
+ + +L N + E+ R K+ IHV G ++P P+ TF +L + S LL+N+
Sbjct: 122 QRESKLTSGKLENLRKEKINFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNIL 181
Query: 153 ELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLR 199
+ G++ PTPIQ QAIPV+L RE A APTGSGKTLAF P+LM+L+
Sbjct: 182 DAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLK 228
>sp|A5D7C1|DDX52_BOVIN Probable ATP-dependent RNA helicase DDX52 OS=Bos taurus GN=DDX52
PE=2 SV=1
Length = 596
Score = 108 bits (269), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 81/128 (63%), Gaps = 9/128 (7%)
Query: 78 SSKQLVPAVDKEKEKVEDGPSKAKKELN----KQIERDAV--FRKKYNIHVSGANVPSPL 131
S+ Q + +V+ K+ED K K +L +Q+ ++ + FR K+ IHV G ++P P+
Sbjct: 102 STIQWISSVEA---KIEDKNVKRKNKLTSGKLEQLRKEKLNFFRNKHKIHVQGTDLPDPI 158
Query: 132 RTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFL 191
TF +L + S LL+N+ + G++ PTPIQ QAIPV+L RE A APTGSGKTLAF
Sbjct: 159 ATFQQLDQEYKINSRLLQNILDAGFQTPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFS 218
Query: 192 CPMLMKLR 199
P+LM L+
Sbjct: 219 IPILMHLK 226
>sp|Q86IZ9|DDX52_DICDI Probable ATP-dependent RNA helicase ddx52 OS=Dictyostelium
discoideum GN=ddx52 PE=3 SV=1
Length = 668
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/109 (48%), Positives = 68/109 (62%), Gaps = 10/109 (9%)
Query: 90 KEKVEDGPSKAKKELNKQIERDAVFRKKYNIHVSGANVPSPLRTFVKLSSRFGCESYLLR 149
KE ED K K+E+ A FR K+ I V G ++P P+ F +L +RF YLL
Sbjct: 163 KETQED---KHKREI-------ATFRNKHRIKVDGTDIPDPMTEFSQLENRFKVRKYLLN 212
Query: 150 NLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKL 198
N+ E+GYKEP+PIQ Q IP+LL +RE A APTGSGKT +F P+L L
Sbjct: 213 NINEIGYKEPSPIQMQVIPILLKEREVVAIAPTGSGKTASFSIPILQAL 261
>sp|Q8K301|DDX52_MOUSE Probable ATP-dependent RNA helicase DDX52 OS=Mus musculus GN=Ddx52
PE=2 SV=2
Length = 598
Score = 105 bits (261), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 61/86 (70%)
Query: 114 FRKKYNIHVSGANVPSPLRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSD 173
FR K+ IHV G ++P P+ TF +L + S LL+N+ + G++ PTPIQ QAIPV+L
Sbjct: 144 FRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQVPTPIQMQAIPVMLHG 203
Query: 174 RECFACAPTGSGKTLAFLCPMLMKLR 199
RE A APTGSGKTLAF P+LM+L+
Sbjct: 204 RELLASAPTGSGKTLAFSIPILMQLK 229
>sp|Q99PT0|DDX52_RAT Probable ATP-dependent RNA helicase DDX52 OS=Rattus norvegicus
GN=Ddx52 PE=2 SV=1
Length = 598
Score = 103 bits (258), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 73/114 (64%), Gaps = 2/114 (1%)
Query: 88 KEKEKVEDGPSKAKKELNKQIERDAV--FRKKYNIHVSGANVPSPLRTFVKLSSRFGCES 145
K ++K +G K E + + ++ + FR K+ IHV G ++P P+ TF +L +
Sbjct: 116 KLQDKKANGEKKLTSEKLEHLRKEKINFFRNKHKIHVQGTDLPDPIATFQQLDQEYKISP 175
Query: 146 YLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLR 199
LL+N+ + G++ PTPIQ QAIPV+L RE A APTGSGKTLAF P+LM+L+
Sbjct: 176 RLLQNILDAGFQVPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLK 229
>sp|P45818|ROK1_YEAST ATP-dependent RNA helicase ROK1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=ROK1 PE=1 SV=1
Length = 564
Score = 101 bits (252), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 95/175 (54%), Gaps = 25/175 (14%)
Query: 36 ADDFSFVEGEKTDPEKAMVSFVKKRKRKSIAGETVEGFNVFKSSKQLVPAVDKEKEKV-- 93
A D+S + G + K + + V+ + F++ K+++ V+ ++EK
Sbjct: 23 AADYSVINGNDEN-----------HKEDNNESQIVKELDFFRN-KRIISKVEDDREKTTE 70
Query: 94 EDGPSKAKKELN----------KQIERDAVFRKKYNIHVSGANVPSPLRTFVKLSSRFGC 143
D P+K +K N +E A RK Y +VSG ++P P+ +F L SRF
Sbjct: 71 NDSPNKEEKSGNDDGLIKPVITNTVEASA-LRKSYKGNVSGIDIPLPIGSFEDLISRFSF 129
Query: 144 ESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKL 198
+ LL NL E G+ EPTPIQ + IPV L++R+ AC PTGSGKTLAFL P++ ++
Sbjct: 130 DKRLLNNLIENGFTEPTPIQCECIPVALNNRDVLACGPTGSGKTLAFLIPLVQQI 184
>sp|A6ZU15|ROK1_YEAS7 ATP-dependent RNA helicase ROK1 OS=Saccharomyces cerevisiae (strain
YJM789) GN=ROK1 PE=3 SV=1
Length = 564
Score = 101 bits (252), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 96/175 (54%), Gaps = 25/175 (14%)
Query: 36 ADDFSFVEGEKTDPEKAMVSFVKKRKRKSIAGETVEGFNVFKSSKQLVPAVDKEKEKV-- 93
A D+S + G+ + K + + V+ + F++ K+++ V+ ++EK
Sbjct: 23 AADYSVINGKDEN-----------HKEDNNESQIVKELDFFRN-KRIISKVEDDREKTTE 70
Query: 94 EDGPSKAKKELN----------KQIERDAVFRKKYNIHVSGANVPSPLRTFVKLSSRFGC 143
D P+K +K N +E A RK Y +VSG ++P P+ +F L SRF
Sbjct: 71 NDSPNKEEKSGNDDGLIKPVITNTVEASA-LRKSYKGNVSGIDIPLPIGSFEDLISRFSF 129
Query: 144 ESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKL 198
+ LL NL E G+ EPTPIQ + IPV L++R+ AC PTGSGKTLAFL P++ ++
Sbjct: 130 DRRLLNNLIENGFTEPTPIQCECIPVALNNRDVLACGPTGSGKTLAFLIPLVQQI 184
>sp|Q6CSW1|ROK1_KLULA ATP-dependent RNA helicase ROK1 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=ROK1 PE=3 SV=1
Length = 579
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/90 (52%), Positives = 64/90 (71%), Gaps = 1/90 (1%)
Query: 110 RDAV-FRKKYNIHVSGANVPSPLRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIP 168
+DA+ RK Y +VSG +VP P+ +F L +RF + LL NL E + EPTPIQ ++IP
Sbjct: 106 QDALKLRKSYQGNVSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIP 165
Query: 169 VLLSDRECFACAPTGSGKTLAFLCPMLMKL 198
+LL +R+ ACAPTGSGKTLAFL P+L ++
Sbjct: 166 ILLHERDMIACAPTGSGKTLAFLIPLLQQI 195
>sp|Q6FN65|ROK1_CANGA ATP-dependent RNA helicase ROK1 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=ROK1 PE=3 SV=1
Length = 565
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 79/136 (58%), Gaps = 13/136 (9%)
Query: 76 FKSSKQLVPAVDKEKEKVEDGPSKAKKELNKQI-------------ERDAVFRKKYNIHV 122
F +K++V V+ K K+ED + ++ N E+ + RK Y ++
Sbjct: 51 FFRNKKIVSKVETAKAKLEDSVEDSHQQDNNDDVTEVAYDVKITTKEQASALRKSYKGNI 110
Query: 123 SGANVPSPLRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPT 182
+G ++P P+ +F L SRF + LL NL E + EPTPIQ +AIP+ L+ R+ ACAPT
Sbjct: 111 TGEDIPLPIGSFEDLISRFSLDKRLLNNLIENHFTEPTPIQCEAIPLCLNGRDLLACAPT 170
Query: 183 GSGKTLAFLCPMLMKL 198
GSGKTLAFL P+L ++
Sbjct: 171 GSGKTLAFLIPLLQQI 186
>sp|Q75AE1|ROK1_ASHGO ATP-dependent RNA helicase ROK1 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=ROK1
PE=3 SV=1
Length = 569
Score = 94.7 bits (234), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 44/90 (48%), Positives = 60/90 (66%)
Query: 109 ERDAVFRKKYNIHVSGANVPSPLRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIP 168
E + R+ Y V+GA+ P P+ +F L +RF + LL NL E + EPTPIQ +AIP
Sbjct: 96 EEASQLRRSYRGKVTGADAPLPIGSFEDLVTRFKLDKRLLSNLIENNFTEPTPIQCEAIP 155
Query: 169 VLLSDRECFACAPTGSGKTLAFLCPMLMKL 198
+ L +R+ ACAPTGSGKTLAFL P+L ++
Sbjct: 156 ISLQNRDIVACAPTGSGKTLAFLIPLLQQV 185
>sp|Q6CDS6|ROK1_YARLI ATP-dependent RNA helicase ROK1 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=ROK1 PE=3 SV=1
Length = 547
Score = 93.6 bits (231), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 60/90 (66%)
Query: 109 ERDAVFRKKYNIHVSGANVPSPLRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIP 168
E VFR K+ I+++G + P P+ +F L +RF YLL NL + Y +PTPIQ ++IP
Sbjct: 84 EEAVVFRNKHKINITGEDSPLPIGSFEDLITRFNLHPYLLANLKKNKYTDPTPIQCESIP 143
Query: 169 VLLSDRECFACAPTGSGKTLAFLCPMLMKL 198
+L+ R+ ACAPTGSGKT+A+ PM+ L
Sbjct: 144 TMLNGRDLIACAPTGSGKTMAYSIPMVEML 173
>sp|A5E1N2|ROK1_LODEL ATP-dependent RNA helicase ROK1 OS=Lodderomyces elongisporus
(strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 /
NRRL YB-4239) GN=ROK1 PE=3 SV=1
Length = 553
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 73/128 (57%), Gaps = 17/128 (13%)
Query: 88 KEKEKVEDGPSKAKKELNKQIERDA-----------------VFRKKYNIHVSGANVPSP 130
K K+++ SK K NK ER++ VFR + V+G ++P P
Sbjct: 55 KSHRKLDEPSSKILKSKNKDEERESVAEIVPPLELESEEDARVFRNLHKSKVTGDDIPIP 114
Query: 131 LRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAF 190
+ +F + RF + +L NL + + EPTPIQ +AIP+ L++R+ ACAPTGSGKTLAF
Sbjct: 115 IGSFQDMIGRFKIDKRVLSNLLDAEFVEPTPIQCEAIPITLANRDLIACAPTGSGKTLAF 174
Query: 191 LCPMLMKL 198
L P+L +L
Sbjct: 175 LIPLLQQL 182
>sp|Q6BP45|ROK1_DEBHA ATP-dependent RNA helicase ROK1 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=ROK1 PE=3 SV=2
Length = 550
Score = 90.9 bits (224), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 55/85 (64%)
Query: 114 FRKKYNIHVSGANVPSPLRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSD 173
RK VSG ++P P+ +F L R+ + LL NL + G+ EPTPIQ +AIP+ L
Sbjct: 92 LRKLNKSKVSGEDIPLPIGSFEDLIGRYKLDKKLLSNLIDAGFTEPTPIQDEAIPISLEG 151
Query: 174 RECFACAPTGSGKTLAFLCPMLMKL 198
R+ ACAPTGSGKTLAFL P++ +
Sbjct: 152 RDLIACAPTGSGKTLAFLIPLVQTI 176
>sp|Q9BUQ8|DDX23_HUMAN Probable ATP-dependent RNA helicase DDX23 OS=Homo sapiens GN=DDX23
PE=1 SV=3
Length = 820
Score = 90.5 bits (223), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 72/115 (62%), Gaps = 5/115 (4%)
Query: 88 KEKEKVEDGPSKAKKELNKQIERDA-VFRKKYNIHVSGANVPSPLRTFVKLSSRFGCESY 146
KE ++ D ++K+L++ +RD +FR+ Y+I G +P+P+R++ S +
Sbjct: 346 KEAKQRWDDRHWSQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIRSWKDSS----LPPH 401
Query: 147 LLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVL 201
+L + + GYKEPTPIQRQAIP+ L +R+ A TGSGKT AFL P+L+ + L
Sbjct: 402 ILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTL 456
>sp|Q5RC67|DDX23_PONAB Probable ATP-dependent RNA helicase DDX23 OS=Pongo abelii GN=DDX23
PE=2 SV=1
Length = 820
Score = 90.5 bits (223), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 72/115 (62%), Gaps = 5/115 (4%)
Query: 88 KEKEKVEDGPSKAKKELNKQIERDA-VFRKKYNIHVSGANVPSPLRTFVKLSSRFGCESY 146
KE ++ D ++K+L++ +RD +FR+ Y+I G +P+P+R++ S +
Sbjct: 346 KEAKQRWDDRHWSQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIRSWKDSS----LPPH 401
Query: 147 LLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVL 201
+L + + GYKEPTPIQRQAIP+ L +R+ A TGSGKT AFL P+L+ + L
Sbjct: 402 ILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTL 456
>sp|A7TT88|ROK1_VANPO ATP-dependent RNA helicase ROK1 OS=Vanderwaltozyma polyspora
(strain ATCC 22028 / DSM 70294) GN=ROK1 PE=3 SV=1
Length = 570
Score = 90.5 bits (223), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 60/90 (66%)
Query: 109 ERDAVFRKKYNIHVSGANVPSPLRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIP 168
E + RK +VSG ++P P+ +F L +RF + LL NL + EPTPIQ +AIP
Sbjct: 104 EEAKLLRKSNKSNVSGEDIPLPIGSFEDLITRFSFDKRLLNNLILNHFTEPTPIQCEAIP 163
Query: 169 VLLSDRECFACAPTGSGKTLAFLCPMLMKL 198
+ L++R+ ACAPTGSGKTLAFL P++ ++
Sbjct: 164 LALNNRDMLACAPTGSGKTLAFLIPLIQQV 193
>sp|A5DF03|PRP28_PICGU Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 /
JCM 1539 / NBRC 10279 / NRRL Y-324) GN=PRP28 PE=3 SV=2
Length = 575
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 62/103 (60%), Gaps = 5/103 (4%)
Query: 100 AKKELNKQIERDA-VFRKKYNIHVSGANVPSPLRTFVKLSSRFGCESYLLRNLAELGYKE 158
+ K+L RD +F++ ++I G N+P+PLR++ G + LL + +LGYKE
Sbjct: 117 SDKKLEDMTSRDWRIFKEDFSITCKGNNIPNPLRSW----KESGIPTTLLNTIDQLGYKE 172
Query: 159 PTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVL 201
PTPIQR AIP L R+ A TGSGKTLAFL P+L L +
Sbjct: 173 PTPIQRAAIPTALGHRDVVGIAETGSGKTLAFLIPLLSYLSAI 215
>sp|Q9Y7C4|ROK1_CANAL ATP-dependent RNA helicase CHR1 OS=Candida albicans (strain SC5314
/ ATCC MYA-2876) GN=CHR1 PE=3 SV=1
Length = 578
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 100/198 (50%), Gaps = 16/198 (8%)
Query: 7 FLFAGVSFDKKK-FVTDFARFKENKESENLADDFSFVEGEKTDPEKAMVSFVKKRKRKSI 65
L G S +KKK TD+A E + + S + + + + F RK S
Sbjct: 6 ILSRGASLNKKKGITTDYALPSEKQTQKQKHKQESLLNEVERETD-----FFHTRKHNS- 59
Query: 66 AGETVEGFNVFKSSKQLVPAVDKEKEKVEDGPSKAKKEL----NKQIERDA-VFRKKYNI 120
T G K K A ++E++E +KAK+E E DA FR +
Sbjct: 60 NSTTTNG----KGDKLTNGANSNKEEQMETNETKAKEEEIPPPELTTEEDAQTFRNLHKS 115
Query: 121 HVSGANVPSPLRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACA 180
V+G ++P P+ +F + RF +L NL + + EPTPIQ ++IP+ L++R+ ACA
Sbjct: 116 KVTGDDIPIPIGSFQDMIGRFHINKKVLSNLIDNEFIEPTPIQCESIPITLNNRDLIACA 175
Query: 181 PTGSGKTLAFLCPMLMKL 198
PTGSGKTLAFL P++ ++
Sbjct: 176 PTGSGKTLAFLIPLVQQI 193
>sp|Q0J7Y8|RH45_ORYSJ DEAD-box ATP-dependent RNA helicase 45 OS=Oryza sativa subsp.
japonica GN=Os08g0154200 PE=3 SV=2
Length = 947
Score = 88.6 bits (218), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 59/88 (67%), Gaps = 4/88 (4%)
Query: 112 AVFRKKYNIHVSGANVPSPLRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLL 171
A +RK + V G +VP P++T+V+ G S LL + +LG+++P PIQ QA+P+++
Sbjct: 265 ATYRKNLELKVHGKDVPKPIKTWVQ----SGLTSKLLDTIKKLGFEKPMPIQAQALPIIM 320
Query: 172 SDRECFACAPTGSGKTLAFLCPMLMKLR 199
S R+C A TGSGKTLAF+ PML ++
Sbjct: 321 SGRDCIGIAKTGSGKTLAFVLPMLRHVK 348
>sp|A3GHW9|ROK1_PICST ATP-dependent RNA helicase ROK1 OS=Scheffersomyces stipitis (strain
ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545)
GN=ROK1 PE=3 SV=1
Length = 558
Score = 87.4 bits (215), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 60/95 (63%)
Query: 106 KQIERDAVFRKKYNIHVSGANVPSPLRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQ 165
+ +E RK + V+G ++P P+ +F + RF +S LL NL E + EPT IQ +
Sbjct: 90 QTVEDSIKLRKANHSKVTGEDIPLPIGSFQDMIGRFRLDSKLLSNLLEAEFVEPTAIQCE 149
Query: 166 AIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRV 200
++P+ LS R+ ACAPTGSGKTLAFL P++ L V
Sbjct: 150 SLPISLSGRDLIACAPTGSGKTLAFLIPLIQSLLV 184
>sp|A5DIX5|ROK1_PICGU ATP-dependent RNA helicase ROK1 OS=Meyerozyma guilliermondii
(strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC
10279 / NRRL Y-324) GN=ROK1 PE=3 SV=2
Length = 537
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 109 ERDAV-FRKKYNIHVSGANVPSPLRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAI 167
E DA RK+ ++VSG ++P P+ +F L +R LL NL GY EPT IQ +AI
Sbjct: 78 EEDAAKLRKQNKVNVSGTDIPLPIGSFEDLIARCNLNRKLLANLIASGYSEPTAIQCEAI 137
Query: 168 PVLLSDRECFACAPTGSGKTLAFLCPMLMKL 198
P R+ ACAPTGSGKTLA+L PM L
Sbjct: 138 PASAEGRDLIACAPTGSGKTLAYLIPMAQAL 168
>sp|Q84UQ1|RH42_ORYSJ DEAD-box ATP-dependent RNA helicase 42 OS=Oryza sativa subsp.
japonica GN=Os08g0159900 PE=2 SV=1
Length = 1049
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 59/88 (67%), Gaps = 4/88 (4%)
Query: 112 AVFRKKYNIHVSGANVPSPLRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLL 171
A +RK+ + V G +VP P++T+V+ G S LL + +LG+++P IQ QA+P+++
Sbjct: 404 AAYRKQLELKVHGKDVPKPIKTWVQ----SGLTSKLLDTIKKLGFEKPMSIQAQALPIIM 459
Query: 172 SDRECFACAPTGSGKTLAFLCPMLMKLR 199
S R+C A TGSGKTLAF+ PML ++
Sbjct: 460 SGRDCIGIAKTGSGKTLAFVLPMLRHVK 487
>sp|A1CX72|PRP28_NEOFI Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 /
NRRL 181) GN=prp28 PE=3 SV=1
Length = 796
Score = 85.1 bits (209), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 64/103 (62%), Gaps = 5/103 (4%)
Query: 100 AKKELNKQIERDA-VFRKKYNIHVSGANVPSPLRTFVKLSSRFGCESYLLRNLAELGYKE 158
++K+L ERD +F++ +NI G +VP+P+R++ G LL + ++GYKE
Sbjct: 331 SEKKLEHMRERDWRIFKEDFNISTKGGSVPNPMRSW----EESGLPKRLLELVDQVGYKE 386
Query: 159 PTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVL 201
PTPIQR AIP+ L R+ A TGSGKT +FL P+L+ + L
Sbjct: 387 PTPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPLLVYISEL 429
>sp|Q53RK8|RH21_ORYSJ DEAD-box ATP-dependent RNA helicase 21 OS=Oryza sativa subsp.
japonica GN=Os03g0708600 PE=2 SV=1
Length = 736
Score = 85.1 bits (209), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 62/97 (63%), Gaps = 5/97 (5%)
Query: 100 AKKELNKQIERDA-VFRKKYNIHVSGANVPSPLRTFVKLSSRFGCESYLLRNLAELGYKE 158
+K L++ ERD +FR+ +NI G+ VP P+R + + S+ G E LLR + + GYKE
Sbjct: 282 TQKSLDEMTERDWRIFREDFNISYKGSKVPRPMRKWSE--SKLGTE--LLRAVEKAGYKE 337
Query: 159 PTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPML 195
P+PIQ +IP+ L R+ A TGSGKT AF+ PML
Sbjct: 338 PSPIQMASIPLGLQQRDVIGIAETGSGKTAAFVLPML 374
>sp|Q4WPE9|PRP28_ASPFU Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Neosartorya
fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 /
FGSC A1100) GN=prp28 PE=3 SV=1
Length = 796
Score = 84.7 bits (208), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 64/103 (62%), Gaps = 5/103 (4%)
Query: 100 AKKELNKQIERDA-VFRKKYNIHVSGANVPSPLRTFVKLSSRFGCESYLLRNLAELGYKE 158
++K+L ERD +F++ +NI G +VP+P+R++ G LL + ++GYKE
Sbjct: 331 SEKKLEHMRERDWRIFKEDFNISTKGGSVPNPMRSW----EESGLPKRLLELVDQVGYKE 386
Query: 159 PTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVL 201
PTPIQR AIP+ L R+ A TGSGKT +FL P+L+ + L
Sbjct: 387 PTPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPLLVYISEL 429
>sp|Q5BCU6|PRP28_EMENI Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 /
NRRL 194 / M139) GN=prp28 PE=3 SV=2
Length = 782
Score = 84.3 bits (207), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 60/97 (61%), Gaps = 5/97 (5%)
Query: 100 AKKELNKQIERDA-VFRKKYNIHVSGANVPSPLRTFVKLSSRFGCESYLLRNLAELGYKE 158
++K+L ERD +F++ +NI G +VP+P+R++ G LL + +GYKE
Sbjct: 313 SEKKLEHMRERDWRIFKEDFNIATKGGSVPNPMRSW----DESGLPKRLLELVDRVGYKE 368
Query: 159 PTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPML 195
PTPIQR AIP+ + R+ A TGSGKT AFL P+L
Sbjct: 369 PTPIQRAAIPIAMQSRDLIGVAVTGSGKTAAFLLPLL 405
>sp|A1CHL3|PRP28_ASPCL Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC
3887 / NRRL 1) GN=prp28 PE=3 SV=1
Length = 798
Score = 84.0 bits (206), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 61/98 (62%), Gaps = 5/98 (5%)
Query: 100 AKKELNKQIERDA-VFRKKYNIHVSGANVPSPLRTFVKLSSRFGCESYLLRNLAELGYKE 158
++K+L ERD +F++ +NI G +VP+P+R++ G LL + +GYKE
Sbjct: 333 SEKKLEHMRERDWRIFKEDFNISTKGGSVPNPMRSW----EESGLPKRLLELVDRVGYKE 388
Query: 159 PTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLM 196
PTPIQR AIP+ L R+ A TGSGKT +FL P+L+
Sbjct: 389 PTPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPLLV 426
>sp|Q59W52|PRP28_CANAL Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=PRP28 PE=3
SV=1
Length = 581
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 60/97 (61%), Gaps = 5/97 (5%)
Query: 100 AKKELNKQIERDA-VFRKKYNIHVSGANVPSPLRTFVKLSSRFGCESYLLRNLAELGYKE 158
K L + +RD +F++ YNI G N+P+PLR + + S L+ +++LGY+E
Sbjct: 135 TNKNLEEMTDRDWRIFKEDYNITTKGKNIPNPLRYWNEGS----INDKLVSIISQLGYEE 190
Query: 159 PTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPML 195
PT +QR +IP+ L R+ A TGSGKTLAFL P+L
Sbjct: 191 PTSVQRASIPLALKKRDVVGVAETGSGKTLAFLIPVL 227
>sp|Q9SF41|RH45_ARATH DEAD-box ATP-dependent RNA helicase 45 OS=Arabidopsis thaliana
GN=RH45 PE=2 SV=1
Length = 989
Score = 81.3 bits (199), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 6/95 (6%)
Query: 107 QIERDAV--FRKKYNIHVSGANVPSPLRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQR 164
++ +DAV +RK+ + V G +VP P++ + + G S +L L +L Y++P PIQ
Sbjct: 369 RMTQDAVNAYRKELELKVHGKDVPRPIQFW----HQTGLTSKILDTLKKLNYEKPMPIQA 424
Query: 165 QAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLR 199
QA+P+++S R+C A TGSGKTL F+ PML ++
Sbjct: 425 QALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIK 459
>sp|Q8H0U8|RH42_ARATH DEAD-box ATP-dependent RNA helicase 42 OS=Arabidopsis thaliana
GN=RH42 PE=1 SV=2
Length = 1166
Score = 80.5 bits (197), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 54/87 (62%), Gaps = 4/87 (4%)
Query: 113 VFRKKYNIHVSGANVPSPLRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLS 172
+RK+ + V G +VP P +K + G S +L + +L Y++P PIQ QA+P+++S
Sbjct: 510 TYRKELELKVHGKDVPRP----IKFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMS 565
Query: 173 DRECFACAPTGSGKTLAFLCPMLMKLR 199
R+C A TGSGKTL F+ PML ++
Sbjct: 566 GRDCIGVAKTGSGKTLGFVLPMLRHIK 592
>sp|P0CQ88|PRP28_CRYNJ Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21 /
ATCC MYA-565) GN=PRP28 PE=3 SV=1
Length = 738
Score = 80.1 bits (196), Expect = 1e-14, Method: Composition-based stats.
Identities = 42/97 (43%), Positives = 62/97 (63%), Gaps = 5/97 (5%)
Query: 100 AKKELNKQIERD-AVFRKKYNIHVSGANVPSPLRTFVKLSSRFGCESYLLRNLAELGYKE 158
+ K L++ ERD +FR+ ++I G +P PLR + + + S +L + E+GYKE
Sbjct: 282 SDKPLDEMKERDWRIFREDFSIAARGGGIPHPLRNWRESA----IPSQILDIIEEIGYKE 337
Query: 159 PTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPML 195
P+PIQRQAIP+ + +R+ A TGSGKT AF+ PML
Sbjct: 338 PSPIQRQAIPIGMQNRDLIGVAKTGSGKTAAFVIPML 374
>sp|P0CQ89|PRP28_CRYNB Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
GN=PRP28 PE=3 SV=1
Length = 738
Score = 80.1 bits (196), Expect = 1e-14, Method: Composition-based stats.
Identities = 42/97 (43%), Positives = 62/97 (63%), Gaps = 5/97 (5%)
Query: 100 AKKELNKQIERD-AVFRKKYNIHVSGANVPSPLRTFVKLSSRFGCESYLLRNLAELGYKE 158
+ K L++ ERD +FR+ ++I G +P PLR + + + S +L + E+GYKE
Sbjct: 282 SDKPLDEMKERDWRIFREDFSIAARGGGIPHPLRNWRESA----IPSQILDIIEEIGYKE 337
Query: 159 PTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPML 195
P+PIQRQAIP+ + +R+ A TGSGKT AF+ PML
Sbjct: 338 PSPIQRQAIPIGMQNRDLIGVAKTGSGKTAAFVIPML 374
>sp|Q1DMX8|PRP28_COCIM Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Coccidioides
immitis (strain RS) GN=PRP28 PE=3 SV=2
Length = 820
Score = 80.1 bits (196), Expect = 1e-14, Method: Composition-based stats.
Identities = 40/98 (40%), Positives = 64/98 (65%), Gaps = 5/98 (5%)
Query: 100 AKKELNKQIERD-AVFRKKYNIHVSGANVPSPLRTFVKLSSRFGCESYLLRNLAELGYKE 158
++K L++ ERD +F++ +NI G ++P+P+R++ G LL + ++GYK+
Sbjct: 347 SQKRLDQMRERDWRIFKEDFNISTKGGSIPNPMRSW----GESGLPKRLLEIIDKVGYKD 402
Query: 159 PTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLM 196
P+PIQR AIP+ L +R+ A TGSGKT AFL P+L+
Sbjct: 403 PSPIQRAAIPIALQNRDLIGVAVTGSGKTAAFLLPLLV 440
>sp|Q0CLX0|PRP28_ASPTN Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Aspergillus
terreus (strain NIH 2624 / FGSC A1156) GN=prp28 PE=3
SV=1
Length = 783
Score = 80.1 bits (196), Expect = 1e-14, Method: Composition-based stats.
Identities = 42/98 (42%), Positives = 63/98 (64%), Gaps = 5/98 (5%)
Query: 100 AKKELNKQIERD-AVFRKKYNIHVSGANVPSPLRTFVKLSSRFGCESYLLRNLAELGYKE 158
++K+L ERD +F++ +NI G +VP+P+R++ + G S LL + +GYK+
Sbjct: 310 SEKKLEHMRERDWRIFKEDFNIATKGGSVPNPMRSW----AESGLPSRLLDLVHRVGYKD 365
Query: 159 PTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLM 196
PTPIQR AIP+ + R+ A TGSGKT AFL P+L+
Sbjct: 366 PTPIQRAAIPIAMQSRDLIGVAVTGSGKTAAFLLPLLV 403
>sp|A2QIL2|PRP28_ASPNC Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Aspergillus
niger (strain CBS 513.88 / FGSC A1513) GN=prp28 PE=3
SV=1
Length = 810
Score = 79.3 bits (194), Expect = 2e-14, Method: Composition-based stats.
Identities = 45/101 (44%), Positives = 63/101 (62%), Gaps = 13/101 (12%)
Query: 100 AKKELNKQIERD-AVFRKKYNIHVSGANVPSPLRTFVKLSSRFGCESYLLRNLAEL---- 154
++K+L ERD +F++ +NI G +VP+P+R++ ES L + L EL
Sbjct: 339 SEKKLEHMRERDWRIFKEDFNISTKGGSVPNPMRSWD--------ESNLPKRLMELINRV 390
Query: 155 GYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPML 195
GYKEPTPIQR AIP+ + +R+ A TGSGKT AFL P+L
Sbjct: 391 GYKEPTPIQRAAIPIAMQNRDLIGVAVTGSGKTAAFLLPLL 431
>sp|A3LNL1|PRP28_PICST Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=PRP28 PE=3 SV=2
Length = 482
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 61/98 (62%), Gaps = 6/98 (6%)
Query: 100 AKKELNKQIERDA-VFRKKYNIHVSGANVPSPLRTFVKLSSRFGCESYLLRNLAE-LGYK 157
++K L++ RD +FR+ Y I G ++ +PLRT+ + S S LL + + L Y
Sbjct: 23 SEKSLDQMTARDWRIFREDYGITSKGGDIDNPLRTWNEAS----IPSKLLSIIVDKLEYL 78
Query: 158 EPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPML 195
EPTPIQR AIP+ L+ R+ A TGSGKTLAFL P+L
Sbjct: 79 EPTPIQRAAIPLALNQRDVVGIAETGSGKTLAFLIPLL 116
>sp|P93008|RH21_ARATH DEAD-box ATP-dependent RNA helicase 21 OS=Arabidopsis thaliana
GN=RH21 PE=2 SV=1
Length = 733
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 60/99 (60%), Gaps = 9/99 (9%)
Query: 100 AKKELNKQIERDA-VFRKKYNIHVSGANVPSPLRTF--VKLSSRFGCESYLLRNLAELGY 156
+ K L + ERD +FR+ +NI G+ +P P+R++ KL+S LL+ + GY
Sbjct: 280 SDKRLEEMTERDWRIFREDFNISYKGSRIPRPMRSWEESKLTSE------LLKAVERAGY 333
Query: 157 KEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPML 195
K+P+PIQ AIP+ L R+ A TGSGKT AF+ PML
Sbjct: 334 KKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPML 372
>sp|Q2UH00|PRP28_ASPOR Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Aspergillus
oryzae (strain ATCC 42149 / RIB 40) GN=prp28 PE=3 SV=1
Length = 803
Score = 78.6 bits (192), Expect = 3e-14, Method: Composition-based stats.
Identities = 40/98 (40%), Positives = 62/98 (63%), Gaps = 5/98 (5%)
Query: 100 AKKELNKQIERD-AVFRKKYNIHVSGANVPSPLRTFVKLSSRFGCESYLLRNLAELGYKE 158
++K+L ERD +F++ +NI G +VP+P+R++ G L+ + ++GYKE
Sbjct: 334 SEKKLEHMRERDWRIFKEDFNISTKGGSVPNPMRSW----DESGLPKRLMELVNKVGYKE 389
Query: 159 PTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLM 196
PTPIQR AIP+ + R+ A TGSGKT +FL P+L+
Sbjct: 390 PTPIQRAAIPIAMQSRDLIGVAVTGSGKTASFLLPLLV 427
>sp|Q9SZB4|RH43_ARATH Putative DEAD-box ATP-dependent RNA helicase 43 OS=Arabidopsis
thaliana GN=RH43 PE=3 SV=1
Length = 542
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 78/150 (52%), Gaps = 20/150 (13%)
Query: 48 DPEKAMVSFVKKRKRKSIAGETVEGFNVFKS-SKQLVPAVDKEKEKVEDGPSKAKKELNK 106
+P K M+ + +K+ GE G + S P P +K K
Sbjct: 27 EPGKGMMEHLSDKKKLMSVGELARGITYTEPLSTWWKP------------PLHVRKMSTK 74
Query: 107 QIERDAVFRKKYNIHVSGANVPSPLRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQA 166
Q++ + RK+++I V+G ++P P++ F+ + +F S LLR L + G PTPIQ Q
Sbjct: 75 QMD---LIRKQWHITVNGEDIPPPIKNFMDM--KF--PSPLLRMLKDKGIMHPTPIQVQG 127
Query: 167 IPVLLSDRECFACAPTGSGKTLAFLCPMLM 196
+PV+LS R+ A TGSGKTL F+ PM++
Sbjct: 128 LPVVLSGRDMIGIAFTGSGKTLVFVLPMII 157
>sp|Q6C024|PRP28_YARLI Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=PRP28 PE=3 SV=1
Length = 575
Score = 78.2 bits (191), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 71/127 (55%), Gaps = 18/127 (14%)
Query: 88 KEKEKVEDGPSKAKKELNKQIERDA-VFRKKYNIHV-SGANVPSPLRTFVKLSSRFGCES 145
++K +ED + K + RD +F++ Y+I G N+P+PLR++ + G
Sbjct: 117 RQKRDLEDA-HWSDKPVESMTSRDWRIFKEDYSIVTKGGGNIPNPLRSWNECKEIPG--- 172
Query: 146 YLLRN-LAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVLFIP 204
++R+ ++ +GYKEPTPIQR AIP+ L R+ A TGSGKT +FL P++
Sbjct: 173 -IVRDTISRMGYKEPTPIQRAAIPIALGIRDVIGVAETGSGKTASFLIPLI--------- 222
Query: 205 FDYFCEL 211
Y CEL
Sbjct: 223 -SYICEL 228
>sp|Q2HEB0|PRP28_CHAGB Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 /
NBRC 6347 / NRRL 1970) GN=PRP28 PE=3 SV=1
Length = 705
Score = 77.4 bits (189), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 62/111 (55%), Gaps = 13/111 (11%)
Query: 96 GPSKAKKELNKQIERDA-VFRKKYNIHVSGANVPSPLRTFVKLSSRFGCESYLLRNLAEL 154
G ++K+L ERD +F++ + I G +P+P+R++ ES L R L E+
Sbjct: 232 GKHWSEKKLEDMKERDWRIFKENFGIATKGGAIPNPMRSW--------AESNLPRRLLEI 283
Query: 155 ----GYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVL 201
GY EPTPIQR AIP+ R+ A TGSGKT AFL P+L+ + L
Sbjct: 284 VENVGYDEPTPIQRAAIPIAQQARDLIGVAVTGSGKTAAFLLPLLVYISEL 334
>sp|Q7SH33|PRP5_NEUCR Pre-mRNA-processing ATP-dependent RNA helicase prp-5 OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=prp-5 PE=3 SV=1
Length = 1194
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 52/81 (64%), Gaps = 4/81 (4%)
Query: 119 NIHVSGANVPSPLRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFA 178
I VSG N+P P++ + S+ G +L + LG+++PTPIQ QA+PV++S R+
Sbjct: 548 GIKVSGKNIPKPVQKW----SQCGLTRPILDTIESLGFEKPTPIQMQALPVIMSGRDVIG 603
Query: 179 CAPTGSGKTLAFLCPMLMKLR 199
A TGSGKT+AF PML ++
Sbjct: 604 VAKTGSGKTMAFALPMLRHVK 624
>sp|Q2HAD8|PRP5_CHAGB Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 /
NBRC 6347 / NRRL 1970) GN=PRP5 PE=3 SV=1
Length = 1064
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 87/167 (52%), Gaps = 27/167 (16%)
Query: 37 DDFSFVEGEKTDPEK--AMVSFVKKRKRKSIAGETVEGFNVFKSSKQLVPAVDKEKEKVE 94
DD+ + E +K DP AM S KK+ +I +E N + + + P
Sbjct: 349 DDYGYEE-DKADPSSILAMASKKKKKDIPTIDYSKIE-LNQIRKNFWVEP---------- 396
Query: 95 DGPSKAKKELNKQIERD-AVFRKKYN-IHVSGANVPSPLRTFVKLSSRFGCESYLLRNLA 152
+EL++ E D A R + + I VSG NVP P++ + S+ G +L +
Sbjct: 397 -------QELSQMTEDDIADLRLELDGIKVSGKNVPKPVQKW----SQCGLTRPILDVVE 445
Query: 153 ELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLR 199
LGY++PT IQ QA+PV++S R+ A TGSGKT+AF+ PML ++
Sbjct: 446 GLGYEKPTSIQMQALPVIMSGRDVIGVAKTGSGKTMAFVLPMLRHIK 492
>sp|Q6BLU9|PRP28_DEBHA Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=PRP28 PE=3 SV=2
Length = 580
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 59/96 (61%), Gaps = 4/96 (4%)
Query: 100 AKKELNKQIERDA-VFRKKYNIHVSGANVPSPLRTFVKLSSRFGCESYLLRNLAELGYKE 158
++K+++ RD +F++ YNI G ++ +PLR + + + L++NL GY
Sbjct: 121 SEKQIDDMTTRDWRIFKEDYNITSKGGDIENPLRCWAESKLPAKLLNILIKNL---GYDS 177
Query: 159 PTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPM 194
PTPIQR +IP+ L+ R+ A TGSGKTLAFL P+
Sbjct: 178 PTPIQRASIPLALNGRDIVGIAETGSGKTLAFLLPL 213
>sp|A7EGG4|PRP28_SCLS1 Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Sclerotinia
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=prp28
PE=3 SV=1
Length = 816
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 66/113 (58%), Gaps = 10/113 (8%)
Query: 100 AKKELNKQIERDA-VFRKKYNIHVSGANVPSPLRTFV--KLSSRFGCESYLLRNLAELGY 156
++K+L ERD +F++ +NI G +P+P+R++ KL R LL + ++GY
Sbjct: 346 SEKKLEHMRERDWRIFKEDFNISTKGGAIPNPMRSWSESKLPKR------LLDVINQVGY 399
Query: 157 KEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVLFIPFDYFC 209
EP+ +QR AIP+ L R+ A TGSGKT AFL P+L+ + L P + F
Sbjct: 400 DEPSAVQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLLVYISEL-PPLNEFT 451
>sp|A6RJA2|PRP28_BOTFB Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Botryotinia
fuckeliana (strain B05.10) GN=prp28 PE=3 SV=1
Length = 783
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 65/113 (57%), Gaps = 10/113 (8%)
Query: 100 AKKELNKQIERDA-VFRKKYNIHVSGANVPSPLRTFV--KLSSRFGCESYLLRNLAELGY 156
++K+L ERD +F++ +NI G +P+P+R + KL R LL + ++GY
Sbjct: 347 SEKKLEHMRERDWRIFKEDFNISTKGGAIPNPMRNWSESKLPKR------LLDVIHQVGY 400
Query: 157 KEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVLFIPFDYFC 209
EP+ +QR AIP+ L R+ A TGSGKT AFL P+L+ + L P + F
Sbjct: 401 DEPSAVQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLLVYISEL-PPLNEFT 452
>sp|P09052|VASA1_DROME ATP-dependent RNA helicase vasa, isoform A OS=Drosophila
melanogaster GN=vas PE=1 SV=3
Length = 661
Score = 75.1 bits (183), Expect = 3e-13, Method: Composition-based stats.
Identities = 40/85 (47%), Positives = 55/85 (64%), Gaps = 7/85 (8%)
Query: 117 KYN---IHVSGANVPSPLRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSD 173
KYN + V+G++VP P++ F R ++ N+ + GYK PTPIQ+ +IPV+ S
Sbjct: 227 KYNNIPVKVTGSDVPQPIQHFTSADLR----DIIIDNVNKSGYKIPTPIQKCSIPVISSG 282
Query: 174 RECFACAPTGSGKTLAFLCPMLMKL 198
R+ ACA TGSGKT AFL P+L KL
Sbjct: 283 RDLMACAQTGSGKTAAFLLPILSKL 307
>sp|Q9Y7T7|PRP28_SCHPO Pre-mRNA-splicing ATP-dependent RNA helicase prp28
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=prp28 PE=3 SV=1
Length = 662
Score = 74.3 bits (181), Expect = 5e-13, Method: Composition-based stats.
Identities = 44/125 (35%), Positives = 72/125 (57%), Gaps = 6/125 (4%)
Query: 79 SKQLVPAVDKEKEKVE-DGPSKAKKELNKQIERD-AVFRKKYNIHVSGANVPSPLRTFVK 136
+ +L+ +K +K++ D +K L RD + ++ YNI + G ++P+PLR +
Sbjct: 194 AHELIQLQEKRAKKIDWDDVPWREKPLEAMKPRDWRILKEDYNISIKGDDLPNPLRNW-- 251
Query: 137 LSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLM 196
G S +L+ L ++ YKEP+ IQR AIPVLL ++ A TGSGKT AF+ P+++
Sbjct: 252 --EEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLII 309
Query: 197 KLRVL 201
+ L
Sbjct: 310 AISKL 314
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,303,607
Number of Sequences: 539616
Number of extensions: 3199393
Number of successful extensions: 13828
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1113
Number of HSP's successfully gapped in prelim test: 171
Number of HSP's that attempted gapping in prelim test: 12299
Number of HSP's gapped (non-prelim): 1457
length of query: 211
length of database: 191,569,459
effective HSP length: 112
effective length of query: 99
effective length of database: 131,132,467
effective search space: 12982114233
effective search space used: 12982114233
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)