Query 028267
Match_columns 211
No_of_seqs 224 out of 1695
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 08:52:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028267.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028267hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0344 ATP-dependent RNA heli 99.9 1.6E-21 3.4E-26 182.5 9.4 198 1-202 1-202 (593)
2 PLN00206 DEAD-box ATP-dependen 99.8 7.7E-19 1.7E-23 165.7 10.8 90 107-200 96-185 (518)
3 PTZ00110 helicase; Provisional 99.8 1.6E-18 3.5E-23 164.6 11.5 90 108-201 105-195 (545)
4 KOG0331 ATP-dependent RNA heli 99.7 1.3E-17 2.7E-22 156.4 6.6 64 137-200 92-155 (519)
5 KOG0330 ATP-dependent RNA heli 99.7 1.5E-17 3.2E-22 150.3 6.5 70 131-204 60-129 (476)
6 KOG0333 U5 snRNP-like RNA heli 99.7 1E-17 2.2E-22 155.9 4.8 98 101-202 213-311 (673)
7 KOG0338 ATP-dependent RNA heli 99.7 9.2E-18 2E-22 155.8 4.5 70 132-205 181-250 (691)
8 KOG0340 ATP-dependent RNA heli 99.7 4.1E-17 9E-22 146.1 5.9 69 132-204 7-75 (442)
9 PRK04837 ATP-dependent RNA hel 99.7 3E-16 6.6E-21 144.0 9.6 67 132-202 8-74 (423)
10 KOG0341 DEAD-box protein abstr 99.7 5.1E-17 1.1E-21 147.2 3.5 91 107-201 145-235 (610)
11 COG0513 SrmB Superfamily II DN 99.6 4.5E-16 9.9E-21 147.0 10.0 65 132-200 29-93 (513)
12 KOG0334 RNA helicase [RNA proc 99.6 2.3E-16 5E-21 155.5 7.3 89 110-202 342-431 (997)
13 KOG0336 ATP-dependent RNA heli 99.6 7.7E-17 1.7E-21 146.8 1.5 75 125-202 212-286 (629)
14 KOG0346 RNA helicase [RNA proc 99.6 3.7E-16 8E-21 143.1 5.7 65 133-201 20-84 (569)
15 PRK11776 ATP-dependent RNA hel 99.6 2E-15 4.2E-20 140.1 9.2 67 132-202 4-70 (460)
16 PRK04537 ATP-dependent RNA hel 99.6 2E-15 4.3E-20 144.4 9.4 65 133-201 10-74 (572)
17 PRK10590 ATP-dependent RNA hel 99.6 2.4E-15 5.2E-20 139.8 8.0 65 133-201 2-66 (456)
18 KOG0347 RNA helicase [RNA proc 99.6 7.2E-16 1.6E-20 144.3 3.6 70 130-203 179-249 (731)
19 KOG0335 ATP-dependent RNA heli 99.6 7.9E-16 1.7E-20 142.8 3.4 80 119-202 61-140 (482)
20 PRK11634 ATP-dependent RNA hel 99.6 6.7E-15 1.5E-19 142.2 9.1 72 133-208 7-78 (629)
21 PRK01297 ATP-dependent RNA hel 99.6 8.6E-15 1.9E-19 136.5 9.5 68 131-202 86-153 (475)
22 PRK11192 ATP-dependent RNA hel 99.6 8.6E-15 1.9E-19 134.6 9.3 65 133-201 2-66 (434)
23 KOG0348 ATP-dependent RNA heli 99.5 8.2E-15 1.8E-19 136.9 7.2 77 131-211 135-216 (708)
24 KOG0345 ATP-dependent RNA heli 99.5 9.5E-15 2.1E-19 134.7 7.5 67 133-201 5-71 (567)
25 KOG0332 ATP-dependent RNA heli 99.5 1.3E-14 2.7E-19 131.0 7.3 94 114-211 69-167 (477)
26 PTZ00424 helicase 45; Provisio 99.5 4.4E-14 9.5E-19 127.9 9.3 67 131-201 27-93 (401)
27 KOG0343 RNA Helicase [RNA proc 99.5 6.5E-15 1.4E-19 138.0 3.6 66 132-201 69-134 (758)
28 TIGR03817 DECH_helic helicase/ 99.5 6.2E-14 1.4E-18 137.7 8.9 64 142-205 20-83 (742)
29 KOG0339 ATP-dependent RNA heli 99.5 2.5E-14 5.5E-19 133.1 5.1 86 112-201 203-288 (731)
30 KOG0328 Predicted ATP-dependen 99.4 2.3E-14 5E-19 125.7 1.9 80 127-210 22-101 (400)
31 KOG0326 ATP-dependent RNA heli 99.4 1.6E-14 3.4E-19 128.5 -0.3 72 139-210 88-159 (459)
32 KOG0342 ATP-dependent RNA heli 99.4 8.7E-14 1.9E-18 128.8 3.9 63 139-201 85-147 (543)
33 cd00268 DEADc DEAD-box helicas 99.4 1.1E-12 2.5E-17 107.9 8.9 63 139-201 2-64 (203)
34 KOG0337 ATP-dependent RNA heli 99.4 1.7E-13 3.6E-18 125.3 4.2 66 133-202 22-87 (529)
35 KOG0327 Translation initiation 99.3 5.2E-13 1.1E-17 120.5 2.5 70 129-202 23-92 (397)
36 COG1201 Lhr Lhr-like helicases 99.3 3.5E-12 7.5E-17 125.6 8.1 69 142-211 7-78 (814)
37 PRK02362 ski2-like helicase; P 99.3 6.9E-12 1.5E-16 123.1 8.8 63 134-200 3-66 (737)
38 PRK00254 ski2-like helicase; P 99.2 2.1E-11 4.6E-16 119.4 8.9 65 133-201 2-67 (720)
39 KOG0329 ATP-dependent RNA heli 99.2 3.4E-12 7.3E-17 111.0 2.3 84 122-209 32-115 (387)
40 PRK13767 ATP-dependent helicas 99.2 2.2E-11 4.8E-16 121.8 8.3 59 142-201 17-75 (876)
41 KOG0350 DEAD-box ATP-dependent 99.2 1.7E-11 3.6E-16 114.2 4.2 66 144-210 145-219 (620)
42 KOG4284 DEAD box protein [Tran 99.1 2.4E-11 5.2E-16 116.1 1.6 78 126-207 19-96 (980)
43 PRK01172 ski2-like helicase; P 99.1 3E-10 6.5E-15 110.4 8.7 59 141-200 6-64 (674)
44 COG1205 Distinct helicase fami 99.0 5.3E-10 1.2E-14 111.5 7.4 66 143-208 55-120 (851)
45 TIGR00614 recQ_fam ATP-depende 99.0 3.5E-10 7.7E-15 105.7 5.8 44 153-196 6-49 (470)
46 PRK11057 ATP-dependent DNA hel 99.0 1.1E-09 2.5E-14 105.5 7.4 55 143-197 9-64 (607)
47 PRK12899 secA preprotein trans 98.9 1.5E-09 3.3E-14 108.0 6.7 62 139-200 65-134 (970)
48 PLN03137 ATP-dependent DNA hel 98.9 2.1E-09 4.7E-14 108.8 7.4 58 140-197 441-499 (1195)
49 TIGR01389 recQ ATP-dependent D 98.9 2.1E-09 4.5E-14 103.1 5.9 44 154-197 9-52 (591)
50 KOG0349 Putative DEAD-box RNA 98.8 1E-09 2.2E-14 101.4 1.8 62 139-200 5-66 (725)
51 TIGR01054 rgy reverse gyrase. 98.6 7E-08 1.5E-12 99.3 8.1 53 147-200 67-119 (1171)
52 TIGR02621 cas3_GSU0051 CRISPR- 98.6 4.1E-08 9E-13 97.5 6.1 41 154-195 12-53 (844)
53 PRK14701 reverse gyrase; Provi 98.5 2.1E-07 4.6E-12 98.2 8.0 51 146-197 67-118 (1638)
54 PRK09401 reverse gyrase; Revie 98.5 2.8E-07 6.2E-12 94.9 7.7 45 154-200 77-121 (1176)
55 TIGR00580 mfd transcription-re 98.5 3.9E-07 8.4E-12 91.9 7.6 57 143-200 436-499 (926)
56 TIGR00643 recG ATP-dependent D 98.5 4.6E-07 1E-11 87.9 7.9 53 147-200 225-283 (630)
57 PRK10917 ATP-dependent DNA hel 98.4 1.2E-06 2.5E-11 85.9 8.1 54 146-200 249-309 (681)
58 PRK12898 secA preprotein trans 98.3 8.7E-07 1.9E-11 86.3 6.6 44 154-200 100-143 (656)
59 smart00487 DEXDc DEAD-like hel 98.3 1.4E-06 3E-11 69.0 6.0 50 153-202 3-53 (201)
60 TIGR01407 dinG_rel DnaQ family 98.3 1.8E-06 3.9E-11 86.4 7.7 56 143-199 231-290 (850)
61 PRK10689 transcription-repair 98.3 1.7E-06 3.7E-11 89.0 7.5 52 147-199 590-647 (1147)
62 smart00489 DEXDc3 DEAD-like he 98.3 1.7E-06 3.8E-11 76.4 6.4 45 159-203 9-57 (289)
63 smart00488 DEXDc2 DEAD-like he 98.3 1.7E-06 3.8E-11 76.4 6.4 45 159-203 9-57 (289)
64 PHA02653 RNA helicase NPH-II; 98.0 5.7E-06 1.2E-10 81.1 4.9 38 162-199 168-214 (675)
65 COG1204 Superfamily II helicas 98.0 9.2E-06 2E-10 80.6 5.7 60 142-201 15-75 (766)
66 COG1202 Superfamily II helicas 97.9 1.4E-05 2.9E-10 76.6 5.7 62 140-201 198-260 (830)
67 PRK09200 preprotein translocas 97.9 2E-05 4.3E-10 78.4 6.1 46 152-200 73-118 (790)
68 KOG0952 DNA/RNA helicase MER3/ 97.9 1.1E-05 2.5E-10 81.0 3.9 48 154-201 106-154 (1230)
69 PRK05580 primosome assembly pr 97.8 9E-05 2E-09 72.8 8.4 43 158-200 144-189 (679)
70 TIGR03714 secA2 accessory Sec 97.8 3.6E-05 7.9E-10 76.2 5.6 46 152-200 65-110 (762)
71 PHA02558 uvsW UvsW helicase; P 97.7 6.5E-05 1.4E-09 71.1 6.5 37 156-192 112-148 (501)
72 TIGR00963 secA preprotein tran 97.7 4.5E-05 9.7E-10 75.3 5.2 43 154-199 53-96 (745)
73 COG0514 RecQ Superfamily II DN 97.4 0.00011 2.4E-09 70.9 3.8 44 154-197 13-56 (590)
74 PRK07246 bifunctional ATP-depe 97.3 0.0003 6.5E-09 70.5 5.3 47 151-198 239-289 (820)
75 COG1199 DinG Rad3-related DNA 97.3 0.00064 1.4E-08 66.0 7.3 50 153-202 10-63 (654)
76 KOG0352 ATP-dependent DNA heli 97.3 0.0002 4.4E-09 66.7 3.6 51 147-197 7-60 (641)
77 TIGR00604 rad3 DNA repair heli 97.2 0.00055 1.2E-08 67.4 6.1 47 156-202 8-58 (705)
78 PRK11747 dinG ATP-dependent DN 97.2 0.00098 2.1E-08 65.8 7.3 45 155-200 23-76 (697)
79 PRK08074 bifunctional ATP-depe 97.2 0.0006 1.3E-08 69.2 5.7 45 155-200 255-303 (928)
80 KOG0353 ATP-dependent DNA heli 97.1 0.00062 1.3E-08 62.8 4.4 58 139-196 74-132 (695)
81 KOG0354 DEAD-box like helicase 97.0 0.00093 2E-08 65.9 5.0 60 143-203 47-106 (746)
82 PRK13766 Hef nuclease; Provisi 97.0 0.0015 3.2E-08 64.7 6.2 44 155-199 12-55 (773)
83 PRK09694 helicase Cas3; Provis 96.8 0.0023 5.1E-08 64.7 6.1 51 157-208 285-335 (878)
84 PRK13104 secA preprotein trans 96.8 0.0016 3.5E-08 65.6 4.9 42 157-200 81-122 (896)
85 KOG0951 RNA helicase BRR2, DEA 96.6 0.0044 9.5E-08 64.1 6.2 67 135-203 288-355 (1674)
86 KOG0351 ATP-dependent DNA heli 96.5 0.0012 2.6E-08 67.0 2.1 49 147-195 253-301 (941)
87 PRK12904 preprotein translocas 96.4 0.0032 7E-08 63.1 4.3 43 154-199 78-121 (830)
88 COG4581 Superfamily II RNA hel 96.4 0.0056 1.2E-07 62.6 6.0 52 150-202 112-163 (1041)
89 PRK13894 conjugal transfer ATP 96.3 0.015 3.3E-07 52.3 7.5 52 145-199 121-173 (319)
90 COG1061 SSL2 DNA or RNA helica 96.0 0.0097 2.1E-07 55.7 4.9 43 156-199 34-80 (442)
91 PRK11448 hsdR type I restricti 95.9 0.015 3.3E-07 60.3 6.3 45 157-202 412-461 (1123)
92 PRK13107 preprotein translocas 95.8 0.0069 1.5E-07 61.1 3.4 44 154-200 79-122 (908)
93 COG2805 PilT Tfp pilus assembl 95.5 0.019 4E-07 51.8 4.4 57 122-202 96-153 (353)
94 PF04851 ResIII: Type III rest 95.1 0.024 5.2E-07 44.7 3.5 26 171-196 23-48 (184)
95 PRK13833 conjugal transfer pro 94.9 0.099 2.2E-06 47.3 7.4 50 147-199 119-169 (323)
96 TIGR02782 TrbB_P P-type conjug 94.6 0.13 2.8E-06 45.9 7.2 52 146-200 106-158 (299)
97 COG1203 CRISPR-associated heli 94.4 0.078 1.7E-06 52.8 5.9 42 159-200 196-241 (733)
98 PF13245 AAA_19: Part of AAA d 94.3 0.11 2.3E-06 37.0 4.9 27 172-198 8-35 (76)
99 TIGR02524 dot_icm_DotB Dot/Icm 94.1 0.14 3E-06 46.8 6.6 28 172-200 133-160 (358)
100 COG1110 Reverse gyrase [DNA re 94.0 0.16 3.5E-06 52.1 7.1 38 151-188 75-112 (1187)
101 TIGR02525 plasmid_TraJ plasmid 93.8 0.2 4.4E-06 46.1 7.0 26 174-200 150-175 (372)
102 PF07517 SecA_DEAD: SecA DEAD- 93.8 0.26 5.7E-06 43.4 7.4 43 156-200 75-117 (266)
103 PRK10536 hypothetical protein; 93.6 0.19 4.2E-06 44.2 6.1 47 154-200 55-101 (262)
104 PRK12906 secA preprotein trans 92.7 0.19 4.1E-06 50.5 5.3 42 157-200 79-120 (796)
105 COG4962 CpaF Flp pilus assembl 92.5 0.22 4.7E-06 45.5 5.1 36 154-189 153-189 (355)
106 PF00437 T2SE: Type II/IV secr 92.4 0.17 3.6E-06 43.7 4.0 31 170-201 124-154 (270)
107 KOG1133 Helicase of the DEAD s 92.3 0.2 4.3E-06 49.6 4.7 44 158-201 15-62 (821)
108 TIGR00603 rad25 DNA repair hel 92.2 0.21 4.5E-06 49.9 4.9 41 157-198 254-297 (732)
109 PRK11131 ATP-dependent RNA hel 92.2 0.25 5.3E-06 52.2 5.5 26 170-197 86-111 (1294)
110 KOG1132 Helicase of the DEAD s 92.1 0.11 2.5E-06 52.2 2.9 42 158-199 21-66 (945)
111 PRK12326 preprotein translocas 91.9 0.33 7.1E-06 48.5 5.8 44 154-200 75-118 (764)
112 KOG1802 RNA helicase nonsense 91.7 0.26 5.7E-06 48.7 4.8 58 151-209 403-460 (935)
113 COG2804 PulE Type II secretory 91.6 0.48 1E-05 45.2 6.4 42 160-202 243-286 (500)
114 TIGR00376 DNA helicase, putati 91.5 0.44 9.5E-06 46.8 6.2 43 157-200 156-199 (637)
115 PF02534 T4SS-DNA_transf: Type 91.5 0.069 1.5E-06 49.7 0.6 23 174-196 45-67 (469)
116 cd01130 VirB11-like_ATPase Typ 91.2 0.29 6.3E-06 40.0 4.1 32 159-190 10-42 (186)
117 PRK13900 type IV secretion sys 91.0 0.39 8.5E-06 43.5 5.0 30 169-199 156-185 (332)
118 CHL00122 secA preprotein trans 91.0 0.38 8.2E-06 48.8 5.3 42 152-196 71-112 (870)
119 PRK13764 ATPase; Provisional 91.0 0.51 1.1E-05 46.2 6.0 27 172-199 256-282 (602)
120 TIGR01967 DEAH_box_HrpA ATP-de 90.6 0.43 9.4E-06 50.4 5.5 42 154-197 60-104 (1283)
121 KOG0947 Cytoplasmic exosomal R 90.6 0.51 1.1E-05 48.3 5.7 43 154-197 294-338 (1248)
122 TIGR00348 hsdR type I site-spe 90.4 0.35 7.5E-06 47.7 4.4 36 159-194 239-284 (667)
123 COG1198 PriA Primosomal protei 90.3 0.97 2.1E-05 45.2 7.4 42 158-200 198-243 (730)
124 cd00009 AAA The AAA+ (ATPases 90.3 0.64 1.4E-05 34.3 4.9 25 173-198 19-43 (151)
125 PRK05973 replicative DNA helic 90.2 0.8 1.7E-05 39.6 6.0 40 157-198 49-88 (237)
126 PRK08181 transposase; Validate 90.2 0.4 8.6E-06 42.2 4.2 20 170-189 103-122 (269)
127 KOG0951 RNA helicase BRR2, DEA 90.2 0.091 2E-06 54.9 0.1 38 159-196 1144-1182(1674)
128 COG1219 ClpX ATP-dependent pro 90.1 0.29 6.2E-06 44.7 3.3 27 171-199 95-121 (408)
129 PF01580 FtsK_SpoIIIE: FtsK/Sp 89.9 0.52 1.1E-05 38.8 4.5 36 173-209 38-75 (205)
130 PRK13850 type IV secretion sys 89.7 0.12 2.6E-06 51.0 0.6 25 174-198 140-164 (670)
131 cd01122 GP4d_helicase GP4d_hel 89.2 0.23 5E-06 42.6 1.9 29 169-198 26-54 (271)
132 PRK13851 type IV secretion sys 89.0 0.4 8.7E-06 43.7 3.4 29 169-198 158-186 (344)
133 KOG0950 DNA polymerase theta/e 88.9 0.58 1.2E-05 47.7 4.7 59 143-201 207-268 (1008)
134 PRK13897 type IV secretion sys 88.9 0.13 2.8E-06 50.3 0.1 25 174-198 159-183 (606)
135 PRK10436 hypothetical protein; 88.6 1.1 2.3E-05 42.6 6.1 46 151-200 197-244 (462)
136 TIGR02538 type_IV_pilB type IV 88.3 1.4 3E-05 42.7 6.7 45 151-199 295-341 (564)
137 PRK11773 uvrD DNA-dependent he 87.9 0.77 1.7E-05 45.6 4.9 51 158-210 9-60 (721)
138 PRK12902 secA preprotein trans 87.9 0.76 1.6E-05 46.9 4.8 43 154-199 82-124 (939)
139 TIGR01420 pilT_fam pilus retra 87.8 1.6 3.4E-05 39.5 6.5 28 172-200 121-148 (343)
140 PF01695 IstB_IS21: IstB-like 87.7 0.86 1.9E-05 37.4 4.3 30 170-200 44-73 (178)
141 TIGR02688 conserved hypothetic 87.7 1 2.2E-05 42.5 5.2 58 134-191 163-227 (449)
142 cd01129 PulE-GspE PulE/GspE Th 87.6 1.3 2.8E-05 38.7 5.5 45 151-199 59-105 (264)
143 PRK13880 conjugal transfer cou 87.5 0.13 2.8E-06 50.5 -0.8 24 174-197 176-199 (636)
144 PRK13103 secA preprotein trans 87.4 0.87 1.9E-05 46.5 4.9 45 153-200 78-122 (913)
145 PF12775 AAA_7: P-loop contain 87.3 0.4 8.7E-06 42.1 2.2 22 169-190 29-50 (272)
146 PRK13876 conjugal transfer cou 86.8 0.23 5E-06 49.1 0.4 25 174-198 145-169 (663)
147 cd01127 TrwB Bacterial conjuga 86.7 0.7 1.5E-05 42.7 3.6 35 166-201 35-69 (410)
148 COG4098 comFA Superfamily II D 86.6 0.97 2.1E-05 41.7 4.3 43 157-200 96-142 (441)
149 TIGR02533 type_II_gspE general 85.8 1.1 2.5E-05 42.6 4.6 45 151-199 221-267 (486)
150 KOG1803 DNA helicase [Replicat 85.6 1.2 2.7E-05 43.4 4.7 43 158-200 185-228 (649)
151 PRK13889 conjugal transfer rel 85.5 3 6.4E-05 43.2 7.6 44 154-199 343-387 (988)
152 TIGR02767 TraG-Ti Ti-type conj 85.2 0.33 7.1E-06 47.7 0.6 23 174-196 212-234 (623)
153 COG0630 VirB11 Type IV secreto 85.0 0.83 1.8E-05 41.0 3.1 34 156-189 125-159 (312)
154 TIGR01448 recD_rel helicase, p 84.8 4.1 8.8E-05 40.7 8.1 43 157-200 322-364 (720)
155 TIGR03819 heli_sec_ATPase heli 84.5 1.8 4E-05 39.2 5.1 43 146-190 152-195 (340)
156 PRK06921 hypothetical protein; 84.4 4.7 0.0001 35.2 7.5 29 172-201 116-144 (266)
157 PF01935 DUF87: Domain of unkn 84.3 1.5 3.2E-05 36.7 4.2 26 173-199 23-48 (229)
158 COG1111 MPH1 ERCC4-like helica 84.3 1.9 4.2E-05 41.3 5.2 44 159-203 16-59 (542)
159 KOG0948 Nuclear exosomal RNA h 84.1 1.2 2.5E-05 44.9 3.9 44 158-201 129-172 (1041)
160 TIGR02759 TraD_Ftype type IV c 84.0 1.1 2.4E-05 43.5 3.7 53 146-201 148-203 (566)
161 PRK13700 conjugal transfer pro 83.9 1.1 2.5E-05 44.7 3.7 57 145-202 157-213 (732)
162 PRK12903 secA preprotein trans 83.8 1.7 3.7E-05 44.3 4.9 41 154-197 75-115 (925)
163 PRK06526 transposase; Provisio 83.7 0.71 1.5E-05 40.2 2.0 22 170-191 95-116 (254)
164 COG5008 PilU Tfp pilus assembl 82.5 1.1 2.4E-05 40.2 2.7 21 176-197 130-150 (375)
165 PRK13822 conjugal transfer cou 82.4 0.48 1E-05 46.7 0.5 23 174-196 225-247 (641)
166 COG1200 RecG RecG-like helicas 81.8 2.3 5.1E-05 42.0 4.9 57 143-200 247-310 (677)
167 PRK08116 hypothetical protein; 81.6 5.4 0.00012 34.8 6.8 28 173-201 114-141 (268)
168 TIGR02768 TraA_Ti Ti-type conj 81.4 5.8 0.00013 39.8 7.7 55 143-199 338-393 (744)
169 PRK11054 helD DNA helicase IV; 81.3 5.1 0.00011 39.8 7.2 51 157-209 195-246 (684)
170 TIGR03499 FlhF flagellar biosy 81.0 4.2 9.2E-05 35.7 5.9 64 128-191 133-212 (282)
171 TIGR02788 VirB11 P-type DNA tr 80.4 2 4.3E-05 38.2 3.7 21 170-190 141-161 (308)
172 TIGR00665 DnaB replicative DNA 80.3 3 6.6E-05 38.5 5.0 27 173-200 195-221 (434)
173 KOG0733 Nuclear AAA ATPase (VC 80.3 2 4.4E-05 42.4 3.9 17 174-190 546-562 (802)
174 cd01363 Motor_domain Myosin an 80.1 1.5 3.2E-05 36.0 2.6 25 165-189 14-40 (186)
175 PRK10875 recD exonuclease V su 80.0 8.2 0.00018 38.0 8.0 31 160-190 154-184 (615)
176 COG0556 UvrB Helicase subunit 79.8 1.7 3.7E-05 42.2 3.2 42 158-200 12-58 (663)
177 COG0467 RAD55 RecA-superfamily 79.8 2.8 6.1E-05 35.9 4.3 30 171-201 21-50 (260)
178 TIGR01650 PD_CobS cobaltochela 79.3 3.1 6.7E-05 37.8 4.6 21 170-190 61-81 (327)
179 PRK05703 flhF flagellar biosyn 79.2 1.7 3.7E-05 40.6 3.0 66 126-191 158-239 (424)
180 TIGR03878 thermo_KaiC_2 KaiC d 79.1 2.6 5.7E-05 36.5 3.9 27 171-198 34-60 (259)
181 TIGR03743 SXT_TraD conjugative 78.7 3 6.5E-05 41.1 4.6 27 173-200 176-202 (634)
182 PTZ00361 26 proteosome regulat 78.5 2 4.3E-05 40.5 3.2 19 172-190 216-234 (438)
183 COG1474 CDC6 Cdc6-related prot 78.0 2.2 4.7E-05 39.2 3.2 17 174-190 43-59 (366)
184 PRK08903 DnaA regulatory inact 78.0 1.9 4.2E-05 36.0 2.7 18 172-189 41-58 (227)
185 PRK09183 transposase/IS protei 77.9 1.8 3.9E-05 37.6 2.6 21 170-190 99-119 (259)
186 TIGR03015 pepcterm_ATPase puta 77.8 2.7 5.9E-05 35.6 3.6 34 158-191 23-61 (269)
187 TIGR01242 26Sp45 26S proteasom 77.7 2.4 5.3E-05 38.3 3.4 18 173-190 156-173 (364)
188 TIGR02880 cbbX_cfxQ probable R 77.0 1.8 3.8E-05 38.1 2.3 19 172-190 57-75 (284)
189 PRK12726 flagellar biosynthesi 76.8 4.7 0.0001 37.7 5.1 62 130-191 143-224 (407)
190 PF01078 Mg_chelatase: Magnesi 76.8 2.1 4.6E-05 36.4 2.6 22 169-190 18-39 (206)
191 COG0606 Predicted ATPase with 76.8 1.8 3.9E-05 41.2 2.4 21 170-190 195-215 (490)
192 COG1875 NYN ribonuclease and A 76.7 6.3 0.00014 36.8 5.8 55 153-207 223-279 (436)
193 KOG0060 Long-chain acyl-CoA tr 76.7 1.6 3.5E-05 42.6 2.1 22 169-190 457-478 (659)
194 PRK11331 5-methylcytosine-spec 76.7 2.9 6.4E-05 39.6 3.7 28 163-190 184-211 (459)
195 PRK05748 replicative DNA helic 76.6 4.7 0.0001 37.6 5.1 26 173-199 203-228 (448)
196 KOG0745 Putative ATP-dependent 76.2 1.5 3.3E-05 41.6 1.7 19 171-189 224-242 (564)
197 PF00308 Bac_DnaA: Bacterial d 76.2 4 8.8E-05 34.4 4.2 32 175-207 36-67 (219)
198 PHA02244 ATPase-like protein 76.1 3.9 8.4E-05 38.0 4.3 20 169-188 115-134 (383)
199 PTZ00454 26S protease regulato 76.1 2.6 5.7E-05 39.1 3.3 19 172-190 178-196 (398)
200 PRK12402 replication factor C 76.0 7.3 0.00016 34.1 5.9 16 175-190 38-53 (337)
201 COG4889 Predicted helicase [Ge 76.0 1.1 2.5E-05 45.9 0.8 44 145-189 148-196 (1518)
202 PF00225 Kinesin: Kinesin moto 75.1 2.9 6.3E-05 37.2 3.2 25 167-191 67-93 (335)
203 PRK13531 regulatory ATPase Rav 74.8 4.9 0.00011 38.6 4.7 43 147-190 14-56 (498)
204 TIGR03600 phage_DnaB phage rep 74.8 6.3 0.00014 36.4 5.4 28 171-199 192-219 (421)
205 TIGR02928 orc1/cdc6 family rep 74.3 3.2 7E-05 37.0 3.3 25 174-199 41-65 (365)
206 PRK05201 hslU ATP-dependent pr 74.0 4.3 9.4E-05 38.3 4.1 21 173-193 50-71 (443)
207 TIGR03420 DnaA_homol_Hda DnaA 73.8 3.4 7.3E-05 34.1 3.1 19 172-190 37-55 (226)
208 PF13555 AAA_29: P-loop contai 73.7 3.1 6.7E-05 28.6 2.3 19 172-190 22-40 (62)
209 PRK07952 DNA replication prote 73.7 7.3 0.00016 33.7 5.2 26 174-200 100-125 (244)
210 KOG0926 DEAH-box RNA helicase 73.6 2.7 5.7E-05 42.8 2.7 34 156-189 242-287 (1172)
211 PRK03992 proteasome-activating 73.5 3.4 7.3E-05 38.0 3.2 16 174-189 166-181 (389)
212 PLN02165 adenylate isopentenyl 73.5 2.3 5E-05 38.8 2.1 26 172-198 42-67 (334)
213 COG1224 TIP49 DNA helicase TIP 73.4 2.5 5.5E-05 39.3 2.4 28 171-199 63-90 (450)
214 PRK15483 type III restriction- 73.4 4.5 9.8E-05 41.8 4.3 28 173-200 59-86 (986)
215 PRK06835 DNA replication prote 73.4 6.6 0.00014 35.5 5.0 28 172-200 182-209 (329)
216 TIGR01447 recD exodeoxyribonuc 73.0 3.8 8.2E-05 40.0 3.6 30 161-190 148-177 (586)
217 PRK12727 flagellar biosynthesi 72.7 6.4 0.00014 38.3 5.0 53 139-191 302-368 (559)
218 KOG0989 Replication factor C, 72.6 8.3 0.00018 35.1 5.3 22 173-194 57-78 (346)
219 COG1136 SalX ABC-type antimicr 72.6 3.3 7.2E-05 35.7 2.8 30 170-201 28-57 (226)
220 PRK14722 flhF flagellar biosyn 72.5 2.6 5.7E-05 38.9 2.3 20 172-191 136-155 (374)
221 TIGR02881 spore_V_K stage V sp 72.5 2.6 5.6E-05 36.3 2.1 18 173-190 42-59 (261)
222 PF06068 TIP49: TIP49 C-termin 72.2 2.6 5.5E-05 39.2 2.1 28 171-199 48-75 (398)
223 PF13191 AAA_16: AAA ATPase do 72.1 2 4.4E-05 33.9 1.3 28 173-201 24-51 (185)
224 cd01370 KISc_KIP3_like Kinesin 71.9 3.3 7.2E-05 37.3 2.8 24 167-190 80-105 (338)
225 cd01369 KISc_KHC_KIF5 Kinesin 71.6 3.3 7.1E-05 36.9 2.7 25 166-190 68-94 (325)
226 PRK08533 flagellar accessory p 71.5 5.7 0.00012 33.8 4.0 27 171-198 22-48 (230)
227 KOG4150 Predicted ATP-dependen 71.5 2.5 5.3E-05 41.6 1.9 60 147-206 275-334 (1034)
228 cd01365 KISc_KIF1A_KIF1B Kines 71.5 2.6 5.7E-05 38.2 2.0 24 167-190 81-106 (356)
229 cd01373 KISc_KLP2_like Kinesin 71.5 2.8 6E-05 37.8 2.1 24 167-190 67-92 (337)
230 COG4096 HsdR Type I site-speci 71.3 3.2 7E-05 42.0 2.7 45 157-202 164-213 (875)
231 COG0714 MoxR-like ATPases [Gen 71.2 4.2 9E-05 36.3 3.2 23 168-190 38-60 (329)
232 PRK05595 replicative DNA helic 70.9 8 0.00017 36.1 5.2 24 174-198 202-225 (444)
233 CHL00181 cbbX CbbX; Provisiona 70.7 3.4 7.4E-05 36.5 2.5 20 172-191 58-77 (287)
234 cd01376 KISc_KID_like Kinesin 70.7 3.9 8.4E-05 36.5 2.9 25 166-190 72-98 (319)
235 PRK13826 Dtr system oriT relax 70.5 10 0.00022 39.8 6.2 56 142-199 366-422 (1102)
236 PLN03025 replication factor C 70.4 3.9 8.5E-05 36.3 2.9 16 174-189 35-50 (319)
237 PRK08084 DNA replication initi 70.4 3.4 7.5E-05 35.1 2.4 17 173-189 45-61 (235)
238 KOG0738 AAA+-type ATPase [Post 70.2 2.9 6.3E-05 39.3 2.0 17 174-190 246-262 (491)
239 COG1484 DnaC DNA replication p 70.2 7.5 0.00016 33.7 4.5 27 172-199 104-130 (254)
240 cd01368 KISc_KIF23_like Kinesi 70.2 2.7 5.8E-05 38.0 1.8 24 167-190 81-106 (345)
241 PRK08506 replicative DNA helic 70.0 7.3 0.00016 36.9 4.7 27 173-200 192-218 (472)
242 cd01367 KISc_KIF2_like Kinesin 69.7 3.7 7.9E-05 36.7 2.5 25 167-191 77-103 (322)
243 TIGR02562 cas3_yersinia CRISPR 69.6 5.3 0.00012 41.7 3.9 51 148-199 398-456 (1110)
244 PRK12377 putative replication 69.5 11 0.00024 32.7 5.4 27 173-200 101-127 (248)
245 cd01375 KISc_KIF9_like Kinesin 69.1 3.1 6.7E-05 37.4 1.9 24 167-190 73-98 (334)
246 PRK14712 conjugal transfer nic 69.0 11 0.00025 41.0 6.3 41 158-198 835-879 (1623)
247 cd00983 recA RecA is a bacter 68.8 5.9 0.00013 35.9 3.6 28 173-201 55-82 (325)
248 KOG0920 ATP-dependent RNA heli 68.7 9.3 0.0002 39.4 5.3 50 161-210 176-225 (924)
249 PRK11889 flhF flagellar biosyn 68.6 9.2 0.0002 36.1 4.9 18 174-191 242-259 (436)
250 PF03193 DUF258: Protein of un 68.5 9.5 0.00021 31.1 4.5 43 146-188 3-50 (161)
251 COG1855 ATPase (PilT family) [ 68.4 10 0.00022 36.4 5.2 44 139-201 247-290 (604)
252 PRK00411 cdc6 cell division co 68.3 8.3 0.00018 34.8 4.6 26 174-200 56-81 (394)
253 PRK04328 hypothetical protein; 68.2 7.5 0.00016 33.4 4.1 18 172-189 22-39 (249)
254 PRK09361 radB DNA repair and r 67.9 6.9 0.00015 32.5 3.7 27 172-199 22-48 (225)
255 PRK05342 clpX ATP-dependent pr 67.9 3.5 7.6E-05 38.5 2.1 19 172-190 107-125 (412)
256 KOG0925 mRNA splicing factor A 67.8 11 0.00023 36.6 5.2 48 142-189 31-78 (699)
257 cd01918 HprK_C HprK/P, the bif 67.6 4 8.7E-05 32.9 2.1 26 171-197 12-37 (149)
258 PF14532 Sigma54_activ_2: Sigm 67.6 7.2 0.00016 30.0 3.5 21 169-189 17-37 (138)
259 cd01374 KISc_CENP_E Kinesin mo 67.4 4.1 8.9E-05 36.3 2.3 25 167-191 66-92 (321)
260 PRK06749 replicative DNA helic 66.8 11 0.00024 35.2 5.2 28 173-201 186-213 (428)
261 TIGR02012 tigrfam_recA protein 66.6 6.9 0.00015 35.4 3.6 29 172-201 54-82 (321)
262 PRK14087 dnaA chromosomal repl 66.6 8.3 0.00018 36.3 4.3 27 174-201 142-168 (450)
263 PF00005 ABC_tran: ABC transpo 66.4 4.4 9.4E-05 30.6 2.0 27 171-199 9-35 (137)
264 COG1222 RPT1 ATP-dependent 26S 66.0 6 0.00013 36.7 3.1 17 174-190 186-202 (406)
265 cd00106 KISc Kinesin motor dom 66.0 5 0.00011 35.6 2.6 24 166-189 70-95 (328)
266 TIGR00764 lon_rel lon-related 65.9 9.7 0.00021 37.3 4.8 21 170-190 34-54 (608)
267 PRK06067 flagellar accessory p 65.8 8.3 0.00018 32.4 3.8 19 172-190 24-42 (234)
268 PRK07004 replicative DNA helic 65.7 7.9 0.00017 36.6 4.0 26 173-199 213-238 (460)
269 smart00129 KISc Kinesin motor, 65.7 5.3 0.00012 35.6 2.8 25 166-190 71-97 (335)
270 KOG2373 Predicted mitochondria 65.3 4.2 9.2E-05 37.8 2.0 27 162-188 255-288 (514)
271 TIGR00631 uvrb excinuclease AB 65.3 9.7 0.00021 37.7 4.7 41 158-199 9-54 (655)
272 TIGR00382 clpX endopeptidase C 65.2 4.7 0.0001 37.8 2.3 20 171-190 114-133 (413)
273 TIGR03754 conj_TOL_TraD conjug 64.6 9.9 0.00022 37.7 4.5 27 173-199 180-206 (643)
274 PRK09302 circadian clock prote 64.6 9.1 0.0002 36.3 4.2 27 172-199 30-57 (509)
275 COG1126 GlnQ ABC-type polar am 64.6 6.2 0.00013 34.2 2.8 29 170-200 25-53 (240)
276 TIGR00362 DnaA chromosomal rep 64.5 10 0.00022 34.8 4.4 27 174-201 137-163 (405)
277 cd01372 KISc_KIF4 Kinesin moto 64.5 4.2 9.2E-05 36.4 1.9 24 167-190 66-91 (341)
278 TIGR01243 CDC48 AAA family ATP 64.3 7.1 0.00015 38.8 3.6 16 174-189 488-503 (733)
279 cd01371 KISc_KIF3 Kinesin moto 64.3 4.8 0.0001 36.1 2.2 23 167-189 74-98 (333)
280 PRK08760 replicative DNA helic 64.2 8.9 0.00019 36.4 4.0 26 173-199 229-254 (476)
281 KOG0066 eIF2-interacting prote 64.1 14 0.0003 35.7 5.2 39 172-210 289-327 (807)
282 COG1643 HrpA HrpA-like helicas 64.0 13 0.00027 38.1 5.2 24 174-197 66-89 (845)
283 TIGR03689 pup_AAA proteasome A 63.7 6.5 0.00014 37.9 3.0 25 173-198 216-240 (512)
284 PRK12900 secA preprotein trans 63.5 5.3 0.00011 41.4 2.5 41 157-199 137-177 (1025)
285 PF13481 AAA_25: AAA domain; P 63.5 6.7 0.00015 31.4 2.7 27 172-199 31-57 (193)
286 COG3451 VirB4 Type IV secretor 62.9 8.7 0.00019 39.0 3.9 26 174-200 437-462 (796)
287 KOG0744 AAA+-type ATPase [Post 62.5 6.9 0.00015 36.1 2.8 36 173-209 177-212 (423)
288 PRK08727 hypothetical protein; 62.5 4.6 9.9E-05 34.3 1.6 14 175-188 43-56 (233)
289 PRK13407 bchI magnesium chelat 62.4 12 0.00026 34.0 4.4 17 172-188 27-44 (334)
290 cd01364 KISc_BimC_Eg5 Kinesin 62.1 4.8 0.0001 36.3 1.8 24 167-190 74-99 (352)
291 TIGR00767 rho transcription te 62.1 8.4 0.00018 36.2 3.4 31 170-201 165-195 (415)
292 TIGR03238 dnd_assoc_3 dnd syst 62.0 8 0.00017 37.1 3.3 32 160-191 12-50 (504)
293 PRK13709 conjugal transfer nic 62.0 21 0.00047 39.3 6.8 34 157-190 966-1001(1747)
294 TIGR01241 FtsH_fam ATP-depende 61.9 7.6 0.00016 36.8 3.1 16 174-189 89-104 (495)
295 PRK08840 replicative DNA helic 61.9 16 0.00035 34.6 5.3 27 172-199 216-242 (464)
296 PRK06893 DNA replication initi 61.3 4.9 0.00011 34.0 1.6 15 174-188 40-54 (229)
297 TIGR00390 hslU ATP-dependent p 61.1 11 0.00024 35.7 4.0 17 174-190 48-64 (441)
298 PRK12723 flagellar biosynthesi 61.1 13 0.00027 34.6 4.4 19 173-191 174-192 (388)
299 PRK12608 transcription termina 60.9 17 0.00036 33.8 5.1 40 161-201 118-160 (380)
300 PRK09376 rho transcription ter 60.8 9.2 0.0002 35.9 3.4 30 171-201 167-196 (416)
301 PRK06620 hypothetical protein; 60.8 5.1 0.00011 33.8 1.6 18 174-191 45-62 (214)
302 COG1125 OpuBA ABC-type proline 60.6 8.4 0.00018 34.4 2.9 31 170-202 24-54 (309)
303 KOG0731 AAA+-type ATPase conta 60.6 5.2 0.00011 40.3 1.8 17 174-190 345-361 (774)
304 cd01366 KISc_C_terminal Kinesi 60.6 6.9 0.00015 34.9 2.5 25 166-190 69-95 (329)
305 cd03258 ABC_MetN_methionine_tr 60.5 8 0.00017 32.3 2.8 29 170-200 28-56 (233)
306 KOG0240 Kinesin (SMY1 subfamil 60.4 7.9 0.00017 37.7 2.9 20 170-189 78-99 (607)
307 PRK00149 dnaA chromosomal repl 60.4 13 0.00028 34.7 4.3 27 174-201 149-175 (450)
308 PRK14088 dnaA chromosomal repl 60.3 13 0.00028 34.9 4.3 26 175-201 132-157 (440)
309 KOG0952 DNA/RNA helicase MER3/ 60.2 2.3 4.9E-05 44.2 -0.7 51 158-208 927-978 (1230)
310 PF12340 DUF3638: Protein of u 60.0 18 0.00038 31.3 4.8 58 142-202 9-69 (229)
311 PRK12901 secA preprotein trans 59.6 8 0.00017 40.4 3.0 40 158-199 169-208 (1112)
312 KOG1942 DNA helicase, TBP-inte 59.6 8.2 0.00018 35.3 2.7 28 171-199 62-89 (456)
313 PHA02542 41 41 helicase; Provi 59.5 12 0.00025 35.7 3.9 25 175-200 192-216 (473)
314 PRK08939 primosomal protein Dn 59.2 14 0.00029 33.1 4.1 27 172-199 155-181 (306)
315 PRK06904 replicative DNA helic 59.0 21 0.00046 33.8 5.6 26 173-199 221-246 (472)
316 PRK04220 2-phosphoglycerate ki 58.4 19 0.00042 32.3 4.9 53 143-198 60-116 (301)
317 cd02019 NK Nucleoside/nucleoti 58.3 6.8 0.00015 26.7 1.6 14 176-189 2-15 (69)
318 TIGR01243 CDC48 AAA family ATP 57.8 8.9 0.00019 38.2 2.9 18 172-189 211-228 (733)
319 COG1419 FlhF Flagellar GTP-bin 57.4 7.9 0.00017 36.2 2.3 20 172-191 202-221 (407)
320 KOG0924 mRNA splicing factor A 56.8 8.9 0.00019 38.6 2.7 28 162-189 360-387 (1042)
321 PRK08006 replicative DNA helic 56.7 22 0.00047 33.8 5.3 26 173-199 224-249 (471)
322 PRK11608 pspF phage shock prot 56.6 13 0.00029 33.3 3.6 22 169-190 25-46 (326)
323 TIGR02760 TraI_TIGR conjugativ 56.4 23 0.0005 39.5 6.0 34 157-190 1018-1053(1960)
324 PF00910 RNA_helicase: RNA hel 56.3 19 0.00042 26.5 4.0 16 176-191 1-16 (107)
325 TIGR02746 TraC-F-type type-IV 56.3 17 0.00037 36.2 4.7 25 174-199 431-455 (797)
326 PRK09354 recA recombinase A; P 56.1 13 0.00029 34.0 3.6 27 173-200 60-86 (349)
327 KOG0733 Nuclear AAA ATPase (VC 55.7 14 0.0003 36.8 3.7 61 122-189 177-239 (802)
328 PLN02199 shikimate kinase 55.5 12 0.00027 33.6 3.2 24 166-189 95-118 (303)
329 PLN00020 ribulose bisphosphate 55.3 12 0.00027 35.0 3.2 52 130-189 110-164 (413)
330 cd00820 PEPCK_HprK Phosphoenol 55.3 9 0.0002 29.1 2.0 21 172-192 14-34 (107)
331 PRK06321 replicative DNA helic 55.2 16 0.00034 34.8 4.0 24 175-199 228-251 (472)
332 PF00158 Sigma54_activat: Sigm 55.1 15 0.00033 29.7 3.5 20 171-190 20-39 (168)
333 TIGR02974 phageshock_pspF psp 55.1 16 0.00034 32.9 3.8 22 169-190 18-39 (329)
334 PTZ00112 origin recognition co 54.9 12 0.00025 39.0 3.2 23 176-199 784-806 (1164)
335 KOG0923 mRNA splicing factor A 54.9 7.8 0.00017 38.8 1.9 22 167-188 274-295 (902)
336 PF03215 Rad17: Rad17 cell cyc 54.4 13 0.00028 35.9 3.3 16 175-190 47-62 (519)
337 TIGR00635 ruvB Holliday juncti 54.3 8.9 0.00019 33.3 2.1 24 174-198 31-54 (305)
338 PLN03142 Probable chromatin-re 54.2 25 0.00055 36.8 5.6 42 158-200 169-214 (1033)
339 COG0419 SbcC ATPase involved i 53.8 8.2 0.00018 39.4 2.0 16 175-190 27-42 (908)
340 CHL00195 ycf46 Ycf46; Provisio 53.8 8.7 0.00019 36.7 2.1 18 173-190 259-276 (489)
341 PRK05298 excinuclease ABC subu 53.2 16 0.00034 36.1 3.8 40 158-198 12-56 (652)
342 KOG0991 Replication factor C, 53.0 14 0.0003 32.8 3.0 19 174-192 49-67 (333)
343 cd03247 ABCC_cytochrome_bd The 52.7 12 0.00025 30.1 2.4 28 170-199 25-52 (178)
344 PRK09302 circadian clock prote 52.5 19 0.00041 34.1 4.1 24 173-197 273-296 (509)
345 TIGR03608 L_ocin_972_ABC putat 52.1 11 0.00025 30.6 2.3 28 170-199 21-48 (206)
346 cd03292 ABC_FtsE_transporter F 51.9 12 0.00026 30.7 2.4 28 170-199 24-51 (214)
347 KOG0064 Peroxisomal long-chain 51.8 8.7 0.00019 37.6 1.7 39 171-209 506-549 (728)
348 PRK04195 replication factor C 51.6 26 0.00056 33.1 4.9 17 173-189 39-55 (482)
349 PRK00080 ruvB Holliday junctio 51.6 12 0.00026 33.2 2.5 17 174-190 52-68 (328)
350 PRK06645 DNA polymerase III su 51.2 26 0.00057 33.7 4.9 18 174-191 44-61 (507)
351 COG3950 Predicted ATP-binding 51.1 16 0.00035 34.0 3.2 16 174-189 25-40 (440)
352 COG3839 MalK ABC-type sugar tr 51.1 12 0.00026 34.2 2.5 29 170-200 26-54 (338)
353 PF02463 SMC_N: RecF/RecN/SMC 50.8 12 0.00025 30.9 2.2 18 172-189 23-40 (220)
354 COG3973 Superfamily I DNA and 50.8 43 0.00093 33.4 6.2 64 139-202 185-255 (747)
355 KOG0390 DNA repair protein, SN 50.7 29 0.00063 35.2 5.2 44 157-201 237-290 (776)
356 PRK07773 replicative DNA helic 50.7 18 0.0004 36.9 3.9 26 174-200 218-243 (886)
357 TIGR00150 HI0065_YjeE ATPase, 50.7 24 0.00053 27.8 3.8 27 172-199 21-47 (133)
358 TIGR02655 circ_KaiC circadian 50.4 20 0.00044 33.9 4.0 35 173-209 263-297 (484)
359 PRK05642 DNA replication initi 50.2 24 0.00052 29.9 4.0 25 174-199 46-70 (234)
360 cd03259 ABC_Carb_Solutes_like 49.8 13 0.00029 30.5 2.4 28 170-199 23-50 (213)
361 PRK13873 conjugal transfer ATP 49.8 19 0.00041 36.4 3.8 25 175-200 443-467 (811)
362 PRK10247 putative ABC transpor 49.4 14 0.0003 30.9 2.4 27 171-199 31-57 (225)
363 cd03230 ABC_DR_subfamily_A Thi 49.3 14 0.0003 29.5 2.4 28 170-199 23-50 (173)
364 TIGR02673 FtsE cell division A 49.0 14 0.00031 30.3 2.4 28 170-199 25-52 (214)
365 TIGR03744 traC_PFL_4706 conjug 48.9 18 0.00038 37.1 3.5 25 173-198 475-499 (893)
366 PLN02748 tRNA dimethylallyltra 48.9 12 0.00027 35.6 2.2 21 171-191 20-40 (468)
367 PHA00547 hypothetical protein 48.8 32 0.00068 31.0 4.6 24 168-191 70-93 (337)
368 cd03214 ABC_Iron-Siderophores_ 48.7 14 0.00031 29.6 2.4 28 171-200 23-50 (180)
369 PRK09087 hypothetical protein; 48.7 11 0.00023 32.1 1.6 18 173-190 44-61 (226)
370 cd03262 ABC_HisP_GlnQ_permease 48.6 14 0.00031 30.1 2.4 27 171-199 24-50 (213)
371 cd03255 ABC_MJ0796_Lo1CDE_FtsE 48.6 14 0.00031 30.4 2.3 27 171-199 28-54 (218)
372 COG1220 HslU ATP-dependent pro 48.5 11 0.00023 35.1 1.7 18 173-190 50-67 (444)
373 TIGR02858 spore_III_AA stage I 48.4 24 0.00051 31.1 3.8 25 166-190 101-128 (270)
374 COG1223 Predicted ATPase (AAA+ 48.3 12 0.00026 33.7 1.9 18 173-190 151-168 (368)
375 PRK10908 cell division protein 48.1 15 0.00032 30.5 2.4 28 170-199 25-52 (222)
376 TIGR01817 nifA Nif-specific re 48.0 21 0.00045 34.0 3.7 20 171-190 217-236 (534)
377 PRK15429 formate hydrogenlyase 47.8 20 0.00044 35.3 3.7 19 171-189 397-415 (686)
378 cd03228 ABCC_MRP_Like The MRP 47.7 15 0.00034 29.2 2.4 29 170-200 25-53 (171)
379 COG1221 PspF Transcriptional r 47.7 19 0.0004 33.8 3.2 22 169-190 97-118 (403)
380 smart00763 AAA_PrkA PrkA AAA d 47.7 29 0.00063 32.0 4.4 24 174-198 79-102 (361)
381 PRK14721 flhF flagellar biosyn 47.6 14 0.0003 34.7 2.4 20 172-191 190-209 (420)
382 COG0470 HolB ATPase involved i 47.6 25 0.00053 30.4 3.8 20 172-191 22-42 (325)
383 cd03299 ABC_ModC_like Archeal 47.4 15 0.00032 30.9 2.3 29 170-200 22-50 (235)
384 PRK14086 dnaA chromosomal repl 47.3 27 0.00058 34.5 4.3 25 175-200 316-340 (617)
385 PRK10584 putative ABC transpor 47.2 15 0.00033 30.4 2.4 27 171-199 34-60 (228)
386 cd00124 MYSc Myosin motor doma 47.2 16 0.00035 36.3 2.8 47 144-190 50-103 (679)
387 KOG0246 Kinesin-like protein [ 47.2 10 0.00022 37.2 1.3 23 168-190 285-309 (676)
388 TIGR01277 thiQ thiamine ABC tr 47.2 15 0.00032 30.3 2.2 21 170-190 21-41 (213)
389 TIGR00618 sbcc exonuclease Sbc 47.1 12 0.00026 38.8 2.0 15 176-190 29-43 (1042)
390 cd00267 ABC_ATPase ABC (ATP-bi 47.1 16 0.00035 28.5 2.4 26 171-198 23-48 (157)
391 TIGR02315 ABC_phnC phosphonate 47.0 16 0.00034 30.7 2.4 28 170-199 25-52 (243)
392 cd03221 ABCF_EF-3 ABCF_EF-3 E 47.0 17 0.00036 28.4 2.4 28 170-199 23-50 (144)
393 PF08423 Rad51: Rad51; InterP 46.9 16 0.00034 31.7 2.4 14 176-189 41-54 (256)
394 cd03245 ABCC_bacteriocin_expor 46.9 16 0.00034 30.1 2.4 28 170-199 27-54 (220)
395 cd03301 ABC_MalK_N The N-termi 46.8 16 0.00034 30.0 2.3 28 170-199 23-50 (213)
396 KOG0242 Kinesin-like protein [ 46.8 11 0.00025 37.4 1.7 24 167-190 79-104 (675)
397 PRK09984 phosphonate/organopho 46.7 16 0.00034 31.2 2.4 28 170-199 27-54 (262)
398 PRK14247 phosphate ABC transpo 46.7 16 0.00034 30.9 2.4 28 170-199 26-53 (250)
399 cd03268 ABC_BcrA_bacitracin_re 46.5 16 0.00034 29.9 2.3 28 170-199 23-50 (208)
400 cd03256 ABC_PhnC_transporter A 46.5 16 0.00035 30.5 2.4 28 170-199 24-51 (241)
401 PHA02774 E1; Provisional 46.4 26 0.00057 34.5 4.1 25 174-199 435-459 (613)
402 TIGR00750 lao LAO/AO transport 46.3 25 0.00054 31.0 3.7 27 172-199 33-59 (300)
403 cd03235 ABC_Metallic_Cations A 46.3 16 0.00036 29.9 2.4 28 170-199 22-49 (213)
404 PLN03188 kinesin-12 family pro 46.2 9.4 0.0002 40.4 1.0 23 168-190 159-183 (1320)
405 cd03224 ABC_TM1139_LivF_branch 46.1 15 0.00033 30.2 2.2 29 170-200 23-51 (222)
406 cd03246 ABCC_Protease_Secretio 46.0 17 0.00037 29.0 2.4 27 171-199 26-52 (173)
407 PRK13891 conjugal transfer pro 46.0 26 0.00055 35.8 4.1 17 175-191 490-506 (852)
408 PRK13543 cytochrome c biogenes 46.0 16 0.00035 30.2 2.3 27 170-198 34-60 (214)
409 TIGR00960 3a0501s02 Type II (G 46.0 17 0.00036 29.9 2.4 28 170-199 26-53 (216)
410 TIGR01189 ccmA heme ABC export 45.9 16 0.00036 29.6 2.3 28 170-199 23-50 (198)
411 KOG1131 RNA polymerase II tran 45.9 43 0.00093 32.9 5.3 47 156-202 14-64 (755)
412 KOG0090 Signal recognition par 45.9 7 0.00015 33.8 0.1 19 173-191 38-56 (238)
413 cd03239 ABC_SMC_head The struc 45.7 15 0.00033 29.9 2.1 16 176-191 25-40 (178)
414 cd03225 ABC_cobalt_CbiO_domain 45.7 16 0.00036 29.8 2.3 28 170-199 24-51 (211)
415 cd03238 ABC_UvrA The excision 45.7 17 0.00038 29.6 2.4 22 171-192 19-40 (176)
416 cd03293 ABC_NrtD_SsuB_transpor 45.6 16 0.00035 30.2 2.2 28 170-199 27-54 (220)
417 cd01380 MYSc_type_V Myosin mot 45.6 18 0.0004 36.0 2.9 47 144-190 50-103 (691)
418 cd03253 ABCC_ATM1_transporter 45.5 17 0.00037 30.3 2.4 29 170-200 24-52 (236)
419 TIGR03864 PQQ_ABC_ATP ABC tran 45.5 17 0.00037 30.4 2.4 28 170-199 24-51 (236)
420 cd03229 ABC_Class3 This class 45.4 18 0.00038 29.0 2.4 28 170-199 23-50 (178)
421 TIGR00064 ftsY signal recognit 45.4 16 0.00035 32.0 2.3 19 173-191 72-90 (272)
422 PRK05022 anaerobic nitric oxid 45.2 26 0.00056 33.4 3.8 21 171-191 208-228 (509)
423 PRK13541 cytochrome c biogenes 45.2 17 0.00038 29.5 2.4 27 171-199 24-50 (195)
424 cd03278 ABC_SMC_barmotin Barmo 45.0 16 0.00034 30.2 2.1 18 173-191 23-40 (197)
425 KOG0742 AAA+-type ATPase [Post 45.0 11 0.00025 35.8 1.3 17 174-190 385-401 (630)
426 cd03298 ABC_ThiQ_thiamine_tran 44.9 18 0.00038 29.7 2.4 29 170-200 21-49 (211)
427 KOG0729 26S proteasome regulat 44.9 14 0.0003 33.4 1.8 17 174-190 212-228 (435)
428 PRK13540 cytochrome c biogenes 44.8 18 0.00039 29.5 2.4 28 170-199 24-51 (200)
429 TIGR02211 LolD_lipo_ex lipopro 44.8 17 0.00038 29.9 2.3 27 171-199 29-55 (221)
430 PRK06995 flhF flagellar biosyn 44.8 17 0.00036 34.9 2.4 19 173-191 256-274 (484)
431 cd03263 ABC_subfamily_A The AB 44.7 18 0.00039 29.8 2.4 28 170-199 25-52 (220)
432 PRK14262 phosphate ABC transpo 44.7 18 0.00039 30.5 2.4 28 170-199 26-53 (250)
433 cd03265 ABC_DrrA DrrA is the A 44.7 18 0.00039 29.9 2.4 27 171-199 24-50 (220)
434 cd03226 ABC_cobalt_CbiO_domain 44.6 18 0.00039 29.5 2.4 28 170-199 23-50 (205)
435 cd03269 ABC_putative_ATPase Th 44.4 18 0.00039 29.6 2.4 28 170-199 23-50 (210)
436 cd03216 ABC_Carb_Monos_I This 44.4 18 0.0004 28.6 2.3 28 170-199 23-50 (163)
437 COG4133 CcmA ABC-type transpor 44.4 24 0.00052 30.0 3.1 31 170-202 25-55 (209)
438 PRK09165 replicative DNA helic 44.3 22 0.00047 34.0 3.1 24 174-198 218-241 (497)
439 PRK10416 signal recognition pa 44.3 17 0.00036 32.7 2.3 19 173-191 114-132 (318)
440 PRK04914 ATP-dependent helicas 44.3 57 0.0012 33.9 6.3 43 158-200 152-196 (956)
441 PRK13765 ATP-dependent proteas 44.2 37 0.0008 33.6 4.8 21 170-190 47-67 (637)
442 cd03218 ABC_YhbG The ABC trans 44.2 18 0.0004 30.0 2.4 28 170-199 23-50 (232)
443 PLN03187 meiotic recombination 44.2 27 0.00059 31.9 3.6 19 175-194 128-146 (344)
444 cd03213 ABCG_EPDR ABCG transpo 44.1 18 0.0004 29.5 2.3 28 170-199 32-59 (194)
445 cd03266 ABC_NatA_sodium_export 44.1 18 0.0004 29.7 2.4 27 171-199 29-55 (218)
446 cd03296 ABC_CysA_sulfate_impor 44.0 18 0.0004 30.3 2.4 27 171-199 26-52 (239)
447 cd01384 MYSc_type_XI Myosin mo 43.9 19 0.00041 35.8 2.8 46 145-190 53-105 (674)
448 PRK06696 uridine kinase; Valid 43.8 14 0.0003 30.9 1.6 14 176-189 25-38 (223)
449 TIGR02323 CP_lyasePhnK phospho 43.7 18 0.00039 30.5 2.3 28 170-199 26-53 (253)
450 KOG0734 AAA+-type ATPase conta 43.6 14 0.00031 36.2 1.8 17 174-190 338-354 (752)
451 cd01385 MYSc_type_IX Myosin mo 43.6 18 0.0004 36.0 2.6 47 144-190 57-111 (692)
452 cd03261 ABC_Org_Solvent_Resist 43.6 19 0.00041 30.1 2.4 28 170-199 23-50 (235)
453 PF00063 Myosin_head: Myosin h 43.5 26 0.00057 34.6 3.7 55 144-198 49-112 (689)
454 PRK13539 cytochrome c biogenes 43.5 19 0.00041 29.6 2.4 28 170-199 25-52 (207)
455 PRK11124 artP arginine transpo 43.5 19 0.00041 30.2 2.4 28 170-199 25-52 (242)
456 KOG0922 DEAH-box RNA helicase 43.3 14 0.00031 36.6 1.7 18 171-188 64-81 (674)
457 cd03257 ABC_NikE_OppD_transpor 43.3 19 0.00042 29.6 2.4 27 171-199 29-55 (228)
458 PRK14269 phosphate ABC transpo 43.3 19 0.00041 30.4 2.4 28 170-199 25-52 (246)
459 CHL00131 ycf16 sulfate ABC tra 43.3 19 0.00042 30.3 2.4 21 171-191 31-51 (252)
460 PRK14242 phosphate transporter 43.2 19 0.00041 30.5 2.3 27 170-198 29-55 (253)
461 COG3854 SpoIIIAA ncharacterize 43.1 28 0.00061 30.8 3.3 25 174-200 138-162 (308)
462 KOG4280 Kinesin-like protein [ 43.1 18 0.00039 35.4 2.4 23 169-191 80-104 (574)
463 PHA02624 large T antigen; Prov 43.1 29 0.00063 34.4 3.8 24 174-198 432-455 (647)
464 PRK10895 lipopolysaccharide AB 43.1 19 0.00042 30.2 2.3 28 170-199 26-53 (241)
465 PLN02200 adenylate kinase fami 43.0 15 0.00032 31.5 1.6 16 174-189 44-59 (234)
466 TIGR03410 urea_trans_UrtE urea 42.9 20 0.00043 29.8 2.4 29 170-200 23-51 (230)
467 PRK14239 phosphate transporter 42.9 19 0.00042 30.3 2.4 26 171-198 29-54 (252)
468 cd01382 MYSc_type_VI Myosin mo 42.8 21 0.00045 35.8 2.8 31 160-190 75-108 (717)
469 PRK10820 DNA-binding transcrip 42.8 44 0.00096 32.0 5.0 23 170-192 224-246 (520)
470 TIGR02324 CP_lyasePhnL phospho 42.7 20 0.00043 29.6 2.4 28 170-199 31-58 (224)
471 PRK13650 cbiO cobalt transport 42.6 19 0.00042 31.2 2.3 28 170-199 30-57 (279)
472 PRK11614 livF leucine/isoleuci 42.5 20 0.00043 30.0 2.3 27 170-198 28-54 (237)
473 PRK14257 phosphate ABC transpo 42.5 19 0.00042 32.3 2.4 28 170-199 105-132 (329)
474 TIGR01978 sufC FeS assembly AT 42.5 20 0.00044 29.9 2.4 27 170-198 23-49 (243)
475 PF05496 RuvB_N: Holliday junc 42.4 20 0.00044 31.1 2.4 16 175-190 52-67 (233)
476 PRK12678 transcription termina 42.3 28 0.0006 34.5 3.5 30 172-202 415-444 (672)
477 cd03254 ABCC_Glucan_exporter_l 42.3 21 0.00045 29.6 2.4 28 170-199 26-53 (229)
478 PRK11264 putative amino-acid A 42.2 20 0.00044 30.1 2.4 26 171-198 27-52 (250)
479 cd03264 ABC_drug_resistance_li 42.1 21 0.00046 29.2 2.4 25 172-199 25-49 (211)
480 cd03223 ABCD_peroxisomal_ALDP 41.9 22 0.00047 28.3 2.4 28 170-199 24-51 (166)
481 TIGR00554 panK_bact pantothena 41.9 36 0.00078 30.3 4.0 15 176-190 65-79 (290)
482 PRK09493 glnQ glutamine ABC tr 41.8 21 0.00045 29.9 2.4 28 170-199 24-51 (240)
483 PRK13646 cbiO cobalt transport 41.6 21 0.00045 31.1 2.4 27 171-199 31-57 (286)
484 cd03234 ABCG_White The White s 41.6 20 0.00043 29.8 2.2 28 170-199 30-57 (226)
485 cd01381 MYSc_type_VII Myosin m 41.5 18 0.0004 35.9 2.2 46 145-190 51-103 (671)
486 PRK13342 recombination factor 41.5 21 0.00045 33.0 2.5 17 174-190 37-53 (413)
487 PRK10253 iron-enterobactin tra 41.5 21 0.00045 30.6 2.4 27 171-199 31-57 (265)
488 PRK00440 rfc replication facto 41.5 18 0.00038 31.3 1.9 16 175-190 40-55 (319)
489 PRK11248 tauB taurine transpor 41.4 21 0.00046 30.5 2.4 28 170-199 24-51 (255)
490 cd03215 ABC_Carb_Monos_II This 41.4 22 0.00047 28.6 2.3 29 170-200 23-51 (182)
491 PRK13648 cbiO cobalt transport 41.4 21 0.00046 30.6 2.4 27 171-199 33-59 (269)
492 COG1122 CbiO ABC-type cobalt t 41.3 21 0.00046 30.7 2.4 20 171-190 28-47 (235)
493 PRK10771 thiQ thiamine transpo 41.3 22 0.00047 29.7 2.4 29 170-200 22-50 (232)
494 cd03240 ABC_Rad50 The catalyti 41.2 19 0.00042 29.8 2.1 17 175-191 24-40 (204)
495 PRK14255 phosphate ABC transpo 41.2 22 0.00047 30.1 2.4 26 171-198 29-54 (252)
496 PRK11300 livG leucine/isoleuci 41.2 20 0.00044 30.2 2.2 27 171-199 29-55 (255)
497 smart00242 MYSc Myosin. Large 41.1 22 0.00048 35.3 2.7 47 144-190 56-109 (677)
498 PRK03846 adenylylsulfate kinas 41.1 39 0.00084 27.6 3.8 18 171-188 22-39 (198)
499 KOG1806 DEAD box containing he 41.1 36 0.00078 35.8 4.2 42 156-198 736-777 (1320)
500 CHL00176 ftsH cell division pr 41.1 18 0.00038 35.8 2.0 16 174-189 217-232 (638)
No 1
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.85 E-value=1.6e-21 Score=182.48 Aligned_cols=198 Identities=36% Similarity=0.488 Sum_probs=137.1
Q ss_pred CCCcccccccccccccccchhhHHhhhhchhccccccccccc-cCCCCC--c-hhhhhhhhhhhhccccccCcccCcccc
Q 028267 1 MEKGASFLFAGVSFDKKKFVTDFARFKENKESENLADDFSFV-EGEKTD--P-EKAMVSFVKKRKRKSIAGETVEGFNVF 76 (211)
Q Consensus 1 ~~~~~~~l~~g~~f~~~~~~~d~~~~~~~k~~~~~~~~~~~~-~~~~~~--~-~~~~~~~~kkkk~k~~~~~~~e~~~~~ 76 (211)
|.+-+..||+|+.|.++.|......|.-..+........... ..+..+ . ........+.+.+.+......++....
T Consensus 1 ~~~~f~~it~g~~~~~~~~~k~~~~~~~~lk~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~~~~ 80 (593)
T KOG0344|consen 1 MCKRFRSITLGDSRKKESFPKKYAESSSILKTLTDNSKEPLPMHGEWFDPDNLAEPLKSEEKEKLQNSDSSSPLEDIDRR 80 (593)
T ss_pred CCCcccceecccccccccCCCcchhhhhhccCCccccccccccccccccccccccchhhccchhhhcccchhhhhhhhhc
Confidence 667889999999999999998888887776555543322211 111111 1 111112223344444444444554444
Q ss_pred cCcccCCcccccccccccCCCchhHHHhhhhHHHHHHHHhhcCceeccCCCCCCchhhhhhcccCCCCHHHHHHHHHcCC
Q 028267 77 KSSKQLVPAVDKEKEKVEDGPSKAKKELNKQIERDAVFRKKYNIHVSGANVPSPLRTFVKLSSRFGCESYLLRNLAELGY 156 (211)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~i~v~g~~~p~p~~~f~~l~~~~~l~~~ll~~l~~~g~ 156 (211)
..++..+....++ ..+.... ..+... ..+.....|..+.+++.|.++|.|+.+|.++..+|.+++.|+++|...||
T Consensus 81 ~~~k~~~~~~e~~--~~~~~~~-~~k~~~-~~~~~~~~Rk~~k~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F 156 (593)
T KOG0344|consen 81 GSSKKTKPKMEEK--LSEDVIA-AKKKLQ-TSEKLLGIRKSNKINVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGF 156 (593)
T ss_pred ccccccCchhhhh--ccccHHH-HHHHHh-hhcccccchhcceeeccCCCCCCccccccccchhhhhcHHHHHhHhhCCC
Confidence 4443222211111 1111111 111111 13555678899999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhccc
Q 028267 157 KEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVLF 202 (211)
Q Consensus 157 ~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~ 202 (211)
..|+|||.+|||.++.++|+++||||||||||||++|+|++|....
T Consensus 157 ~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~ 202 (593)
T KOG0344|consen 157 DEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLS 202 (593)
T ss_pred CCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999998776
No 2
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.78 E-value=7.7e-19 Score=165.74 Aligned_cols=90 Identities=43% Similarity=0.683 Sum_probs=84.2
Q ss_pred hHHHHHHHHhhcCceeccCCCCCCchhhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchh
Q 028267 107 QIERDAVFRKKYNIHVSGANVPSPLRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGK 186 (211)
Q Consensus 107 ~~~~~~~~~~~~~i~v~g~~~p~p~~~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGK 186 (211)
.....+.++..++|.+.|.++|.|+.+|.++ +|++.++++|...||..|||||.+|||.++.|+|+|++|+|||||
T Consensus 96 ~~~~~~~~r~~~~i~~~g~~~p~pi~~f~~~----~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGK 171 (518)
T PLN00206 96 SSSQAELLRRKLEIHVKGEAVPPPILSFSSC----GLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGK 171 (518)
T ss_pred CHHHHHHHHHHCCCEecCCCCCchhcCHHhC----CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCc
Confidence 3455677888999999999999999999988 999999999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHhc
Q 028267 187 TLAFLCPMLMKLRV 200 (211)
Q Consensus 187 Tlaf~lPil~~l~~ 200 (211)
|++|+||+|.++..
T Consensus 172 TlayllPil~~l~~ 185 (518)
T PLN00206 172 TASFLVPIISRCCT 185 (518)
T ss_pred cHHHHHHHHHHHHh
Confidence 99999999999864
No 3
>PTZ00110 helicase; Provisional
Probab=99.77 E-value=1.6e-18 Score=164.61 Aligned_cols=90 Identities=40% Similarity=0.672 Sum_probs=82.2
Q ss_pred HHHHHHHHhhcCcee-ccCCCCCCchhhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchh
Q 028267 108 IERDAVFRKKYNIHV-SGANVPSPLRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGK 186 (211)
Q Consensus 108 ~~~~~~~~~~~~i~v-~g~~~p~p~~~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGK 186 (211)
.+....++..+.|.+ .|.++|.|+.+|.++ +|++.++++|..+||..|||||.++||.++.|+|+|++|+|||||
T Consensus 105 ~~~~~~~~~~~~i~~~~g~~~p~p~~~f~~~----~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGK 180 (545)
T PTZ00110 105 SKEVDEIRKEKEITIIAGENVPKPVVSFEYT----SFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGK 180 (545)
T ss_pred HHHHHHHHHhcCcEEecCCCCCcccCCHhhc----CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChH
Confidence 344456777888886 699999999999998 999999999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHhcc
Q 028267 187 TLAFLCPMLMKLRVL 201 (211)
Q Consensus 187 Tlaf~lPil~~l~~~ 201 (211)
|++|+||+|.++...
T Consensus 181 TlaylLP~l~~i~~~ 195 (545)
T PTZ00110 181 TLAFLLPAIVHINAQ 195 (545)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998754
No 4
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.70 E-value=1.3e-17 Score=156.42 Aligned_cols=64 Identities=42% Similarity=0.676 Sum_probs=60.9
Q ss_pred hcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 137 LSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 137 l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
.|+.++|++.+..+|...||..|||||+++||+++.|+|+|++|.|||||||||+||+|++|..
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~ 155 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNN 155 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHh
Confidence 3455699999999999999999999999999999999999999999999999999999999986
No 5
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.70 E-value=1.5e-17 Score=150.30 Aligned_cols=70 Identities=44% Similarity=0.621 Sum_probs=65.8
Q ss_pred chhhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhcccCC
Q 028267 131 LRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVLFIP 204 (211)
Q Consensus 131 ~~~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~~~ 204 (211)
..+|.+| ++.+.|++++...||..||+||.++||.+|.|+|||+.|.||||||+||+||||++|...+..
T Consensus 60 ~~sf~dL----gv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~ 129 (476)
T KOG0330|consen 60 FKSFADL----GVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKL 129 (476)
T ss_pred hcchhhc----CcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCC
Confidence 3467777 999999999999999999999999999999999999999999999999999999999997766
No 6
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.70 E-value=1e-17 Score=155.89 Aligned_cols=98 Identities=47% Similarity=0.730 Sum_probs=88.9
Q ss_pred HHHhhhhHHH-HHHHHhhcCceeccCCCCCCchhhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEE
Q 028267 101 KKELNKQIER-DAVFRKKYNIHVSGANVPSPLRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFAC 179 (211)
Q Consensus 101 ~k~~~~~~~~-~~~~~~~~~i~v~g~~~p~p~~~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~ 179 (211)
.+.+..+.++ ..++++.++|.+.|..+|.|+++|++. +||..++..|...||..|||||.+|||.+++.+|+|++
T Consensus 213 ~k~l~Em~~rdwri~redynis~kg~~lpnplrnwEE~----~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igv 288 (673)
T KOG0333|consen 213 EKVLAEMTERDWRIFREDYNISIKGGRLPNPLRNWEES----GFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGV 288 (673)
T ss_pred hhhHHhcCCccceeeecceeeeecCCCCCccccChhhc----CCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeE
Confidence 3344444433 367889999999999999999999999 99999999999999999999999999999999999999
Q ss_pred cCCCchhHHHhHHHHHHHHhccc
Q 028267 180 APTGSGKTLAFLCPMLMKLRVLF 202 (211)
Q Consensus 180 A~TGsGKTlaf~lPil~~l~~~~ 202 (211)
|.||||||+||+||+|..+..+|
T Consensus 289 aETgsGktaaf~ipLl~~IsslP 311 (673)
T KOG0333|consen 289 AETGSGKTAAFLIPLLIWISSLP 311 (673)
T ss_pred EeccCCccccchhhHHHHHHcCC
Confidence 99999999999999999999887
No 7
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.70 E-value=9.2e-18 Score=155.80 Aligned_cols=70 Identities=43% Similarity=0.636 Sum_probs=65.3
Q ss_pred hhhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhcccCCC
Q 028267 132 RTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVLFIPF 205 (211)
Q Consensus 132 ~~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~~~~ 205 (211)
.+|.++ +|+..||+++..+||..|||||..+||..|.|+||++||.||||||.||+||+|++|.-.|..-
T Consensus 181 ~sF~~m----NLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~ 250 (691)
T KOG0338|consen 181 ESFQSM----NLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKV 250 (691)
T ss_pred hhHHhc----ccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccC
Confidence 367666 9999999999999999999999999999999999999999999999999999999998877653
No 8
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.68 E-value=4.1e-17 Score=146.08 Aligned_cols=69 Identities=45% Similarity=0.762 Sum_probs=64.9
Q ss_pred hhhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhcccCC
Q 028267 132 RTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVLFIP 204 (211)
Q Consensus 132 ~~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~~~ 204 (211)
..|..| ||++++.+.|+.+|+..|||||..+||.||.|+|||+||.||||||+||.||+|++|...|-.
T Consensus 7 ~~F~~L----Gl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~g 75 (442)
T KOG0340|consen 7 KPFSIL----GLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYG 75 (442)
T ss_pred Cchhhc----CccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCc
Confidence 457777 999999999999999999999999999999999999999999999999999999999997744
No 9
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.66 E-value=3e-16 Score=144.05 Aligned_cols=67 Identities=31% Similarity=0.476 Sum_probs=62.6
Q ss_pred hhhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhccc
Q 028267 132 RTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVLF 202 (211)
Q Consensus 132 ~~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~ 202 (211)
.+|.++ +|++.++++|..+||..|||||.+|||.++.|+|+|++||||||||++|++|+++.|...+
T Consensus 8 ~~f~~~----~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~ 74 (423)
T PRK04837 8 QKFSDF----ALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHP 74 (423)
T ss_pred CCHhhC----CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcc
Confidence 467666 9999999999999999999999999999999999999999999999999999999997643
No 10
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.65 E-value=5.1e-17 Score=147.18 Aligned_cols=91 Identities=40% Similarity=0.634 Sum_probs=84.2
Q ss_pred hHHHHHHHHhhcCceeccCCCCCCchhhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchh
Q 028267 107 QIERDAVFRKKYNIHVSGANVPSPLRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGK 186 (211)
Q Consensus 107 ~~~~~~~~~~~~~i~v~g~~~p~p~~~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGK 186 (211)
+.++.+..|....|.+.|.++|+|+.+|.++ .+|..+|+.|.+.|+.+|||||.+.||.+|.|||+|++|-|||||
T Consensus 145 S~e~~e~vRk~~~I~veGd~ipPPIksF~eM----KFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGK 220 (610)
T KOG0341|consen 145 SEEQRELVRKQLHILVEGDDIPPPIKSFKEM----KFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGK 220 (610)
T ss_pred hHHHHHHHHHhheEEeeCCCCCCchhhhhhc----cCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCc
Confidence 4455577888999999999999999999998 899999999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHhcc
Q 028267 187 TLAFLCPMLMKLRVL 201 (211)
Q Consensus 187 Tlaf~lPil~~l~~~ 201 (211)
|+.|+||+|+-..+.
T Consensus 221 TlvFvLP~imf~Leq 235 (610)
T KOG0341|consen 221 TLVFVLPVIMFALEQ 235 (610)
T ss_pred eEEEeHHHHHHHHHH
Confidence 999999999876543
No 11
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=4.5e-16 Score=147.05 Aligned_cols=65 Identities=48% Similarity=0.789 Sum_probs=62.1
Q ss_pred hhhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 132 RTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 132 ~~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
..|.++ +|++.++++|.++||..|||||.++||.++.|+|++++|+||||||+||+||+|++|..
T Consensus 29 ~~F~~l----~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~ 93 (513)
T COG0513 29 PEFASL----GLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILK 93 (513)
T ss_pred CCHhhc----CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhc
Confidence 567777 99999999999999999999999999999999999999999999999999999999884
No 12
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.64 E-value=2.3e-16 Score=155.47 Aligned_cols=89 Identities=42% Similarity=0.718 Sum_probs=80.6
Q ss_pred HHHHHHhhcC-ceeccCCCCCCchhhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHH
Q 028267 110 RDAVFRKKYN-IHVSGANVPSPLRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTL 188 (211)
Q Consensus 110 ~~~~~~~~~~-i~v~g~~~p~p~~~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTl 188 (211)
....++.... |.+.|.++|.|+.+|.+. |++..+|..|+.+||..|+|||.+|||+|+.|+|||++|.||||||+
T Consensus 342 eV~~yr~~l~~i~v~g~~~pkpv~sW~q~----gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~ 417 (997)
T KOG0334|consen 342 EVDEYRCELDGIKVKGKECPKPVTSWTQC----GLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTL 417 (997)
T ss_pred HHHHhhcCccceeeccCCCCcccchHhhC----CchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccch
Confidence 3344554444 999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHhccc
Q 028267 189 AFLCPMLMKLRVLF 202 (211)
Q Consensus 189 af~lPil~~l~~~~ 202 (211)
+|+||+|-++...+
T Consensus 418 af~LPmirhi~dQr 431 (997)
T KOG0334|consen 418 AFLLPMIRHIKDQR 431 (997)
T ss_pred hhhcchhhhhhcCC
Confidence 99999998876654
No 13
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.62 E-value=7.7e-17 Score=146.81 Aligned_cols=75 Identities=37% Similarity=0.647 Sum_probs=69.1
Q ss_pred CCCCCCchhhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhccc
Q 028267 125 ANVPSPLRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVLF 202 (211)
Q Consensus 125 ~~~p~p~~~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~ 202 (211)
..+|.|..+|++.| ...+++++++...||.+|||||.+|||.+|+|.|++++|+||+||||+|++|-+.++...+
T Consensus 212 rpIPnP~ctFddAF---q~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp 286 (629)
T KOG0336|consen 212 RPIPNPVCTFDDAF---QCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQP 286 (629)
T ss_pred ccCCCCcCcHHHHH---hhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccc
Confidence 36889999999986 7889999999999999999999999999999999999999999999999999888776543
No 14
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.62 E-value=3.7e-16 Score=143.15 Aligned_cols=65 Identities=46% Similarity=0.719 Sum_probs=61.5
Q ss_pred hhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhcc
Q 028267 133 TFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVL 201 (211)
Q Consensus 133 ~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~ 201 (211)
+|+++ +|.+.|++++..+||+.||-||..|||.+|.|+|||+.|+||||||+||+||+|+.|...
T Consensus 20 tFe~~----gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~ 84 (569)
T KOG0346|consen 20 TFEEF----GLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAE 84 (569)
T ss_pred cHHHh----CCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHh
Confidence 56665 999999999999999999999999999999999999999999999999999999998754
No 15
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.61 E-value=2e-15 Score=140.08 Aligned_cols=67 Identities=48% Similarity=0.623 Sum_probs=62.1
Q ss_pred hhhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhccc
Q 028267 132 RTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVLF 202 (211)
Q Consensus 132 ~~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~ 202 (211)
.+|.++ +|++.++++|..+||..|||||.+|||.++.|+|+|++|+||||||++|++|+++++....
T Consensus 4 ~~f~~l----~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~ 70 (460)
T PRK11776 4 TAFSTL----PLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKR 70 (460)
T ss_pred CChhhc----CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhcc
Confidence 356666 9999999999999999999999999999999999999999999999999999999996543
No 16
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.61 E-value=2e-15 Score=144.39 Aligned_cols=65 Identities=37% Similarity=0.533 Sum_probs=61.4
Q ss_pred hhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhcc
Q 028267 133 TFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVL 201 (211)
Q Consensus 133 ~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~ 201 (211)
+|.++ +|++.|+++|..+||..|||||+++||.++.|+|||++|+||||||++|++|++++|...
T Consensus 10 ~f~~l----~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~ 74 (572)
T PRK04537 10 TFSSF----DLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSR 74 (572)
T ss_pred Chhhc----CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhc
Confidence 56666 999999999999999999999999999999999999999999999999999999998754
No 17
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.59 E-value=2.4e-15 Score=139.76 Aligned_cols=65 Identities=49% Similarity=0.777 Sum_probs=61.2
Q ss_pred hhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhcc
Q 028267 133 TFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVL 201 (211)
Q Consensus 133 ~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~ 201 (211)
+|+++ +|++.++++|.++||..|||||.++||.++.|+|+|++|+||||||++|+||+++.|...
T Consensus 2 ~f~~l----~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~ 66 (456)
T PRK10590 2 SFDSL----GLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITR 66 (456)
T ss_pred CHHHc----CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhc
Confidence 46666 999999999999999999999999999999999999999999999999999999998654
No 18
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.58 E-value=7.2e-16 Score=144.26 Aligned_cols=70 Identities=33% Similarity=0.461 Sum_probs=62.9
Q ss_pred CchhhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcC-CcEEEEcCCCchhHHHhHHHHHHHHhcccC
Q 028267 130 PLRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSD-RECFACAPTGSGKTLAFLCPMLMKLRVLFI 203 (211)
Q Consensus 130 p~~~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G-~dvi~~A~TGsGKTlaf~lPil~~l~~~~~ 203 (211)
.+..|.+| .||..+|++|..+||..|||||+.+||++..| .||+|.|.|||||||||.|||+++|.....
T Consensus 179 DvsAW~~l----~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~ 249 (731)
T KOG0347|consen 179 DVSAWKNL----FLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSD 249 (731)
T ss_pred ChHHHhcC----CCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccc
Confidence 34556666 89999999999999999999999999999999 899999999999999999999997765543
No 19
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.58 E-value=7.9e-16 Score=142.79 Aligned_cols=80 Identities=40% Similarity=0.620 Sum_probs=75.0
Q ss_pred CceeccCCCCCCchhhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 119 NIHVSGANVPSPLRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 119 ~i~v~g~~~p~p~~~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
.+.+.|.++|.++.+|++. .+.+.|+.++..+||..|||||..+||.+..|+|+++||+||||||.||+||+|+++
T Consensus 61 ~v~~~G~~~p~~i~~f~~~----~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~ 136 (482)
T KOG0335|consen 61 PVKVSGRDVPPHIPTFDEA----ILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYL 136 (482)
T ss_pred eeeccCCccCCCccccccc----chhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHH
Confidence 3567899999999999877 899999999999999999999999999999999999999999999999999999999
Q ss_pred hccc
Q 028267 199 RVLF 202 (211)
Q Consensus 199 ~~~~ 202 (211)
....
T Consensus 137 ~~~~ 140 (482)
T KOG0335|consen 137 LDEG 140 (482)
T ss_pred HhcC
Confidence 8763
No 20
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.57 E-value=6.7e-15 Score=142.17 Aligned_cols=72 Identities=42% Similarity=0.681 Sum_probs=64.3
Q ss_pred hhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhcccCCCceE
Q 028267 133 TFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVLFIPFDYF 208 (211)
Q Consensus 133 ~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~~~~~~~ 208 (211)
+|.++ +|++.++++|.++||..|||||+++||.++.|+|+|++|+||||||++|+||+++.|.......+++
T Consensus 7 ~f~~l----~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~L 78 (629)
T PRK11634 7 TFADL----GLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQIL 78 (629)
T ss_pred CHhhc----CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEE
Confidence 46666 9999999999999999999999999999999999999999999999999999999987654333443
No 21
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.57 E-value=8.6e-15 Score=136.52 Aligned_cols=68 Identities=29% Similarity=0.419 Sum_probs=63.2
Q ss_pred chhhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhccc
Q 028267 131 LRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVLF 202 (211)
Q Consensus 131 ~~~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~ 202 (211)
...|.++ +|++.|+++|.+.||..||+||+++||.++.|+|+|++|+||||||++|+||+|++|...+
T Consensus 86 ~~~f~~~----~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~ 153 (475)
T PRK01297 86 KTRFHDF----NLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTP 153 (475)
T ss_pred CCCHhHC----CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcC
Confidence 4456666 9999999999999999999999999999999999999999999999999999999997764
No 22
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.57 E-value=8.6e-15 Score=134.63 Aligned_cols=65 Identities=46% Similarity=0.711 Sum_probs=61.0
Q ss_pred hhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhcc
Q 028267 133 TFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVL 201 (211)
Q Consensus 133 ~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~ 201 (211)
+|+++ +|++.++++|..+||..||+||.++||.++.|+|+|++||||||||++|++|++++|...
T Consensus 2 ~f~~l----~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~ 66 (434)
T PRK11192 2 TFSEL----ELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDF 66 (434)
T ss_pred CHhhc----CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhc
Confidence 45555 999999999999999999999999999999999999999999999999999999998753
No 23
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.54 E-value=8.2e-15 Score=136.92 Aligned_cols=77 Identities=36% Similarity=0.568 Sum_probs=66.9
Q ss_pred chhhhhhcccCCCCHHHHHHHH-HcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhccc----CCC
Q 028267 131 LRTFVKLSSRFGCESYLLRNLA-ELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVLF----IPF 205 (211)
Q Consensus 131 ~~~f~~l~~~~~l~~~ll~~l~-~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~----~~~ 205 (211)
-..|..+ ||++.|...|. .+++..||.||.+|||.+|.|+|+++.|+|||||||||+|||++.|+... +..
T Consensus 135 s~~f~~L----GL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~ 210 (708)
T KOG0348|consen 135 SAAFASL----GLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSD 210 (708)
T ss_pred cccchhc----CCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccC
Confidence 3457667 99999999995 57999999999999999999999999999999999999999999998763 345
Q ss_pred ceEEeC
Q 028267 206 DYFCEL 211 (211)
Q Consensus 206 ~~~~~~ 211 (211)
++|++|
T Consensus 211 G~~ALV 216 (708)
T KOG0348|consen 211 GPYALV 216 (708)
T ss_pred CceEEE
Confidence 666653
No 24
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.54 E-value=9.5e-15 Score=134.70 Aligned_cols=67 Identities=42% Similarity=0.620 Sum_probs=60.8
Q ss_pred hhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhcc
Q 028267 133 TFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVL 201 (211)
Q Consensus 133 ~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~ 201 (211)
+|+++ .++|+++|+++|..+||...||+|+.|||.++.++||++.|+|||||||||++|+++.|.+.
T Consensus 5 ~~~~l--~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr 71 (567)
T KOG0345|consen 5 SFSSL--APPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRR 71 (567)
T ss_pred chhhc--CCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhh
Confidence 45555 23577999999999999999999999999999999999999999999999999999999554
No 25
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.53 E-value=1.3e-14 Score=130.97 Aligned_cols=94 Identities=30% Similarity=0.471 Sum_probs=80.1
Q ss_pred HHhhcCceeccCCCCCCchh---hhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcC--CcEEEEcCCCchhHH
Q 028267 114 FRKKYNIHVSGANVPSPLRT---FVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSD--RECFACAPTGSGKTL 188 (211)
Q Consensus 114 ~~~~~~i~v~g~~~p~p~~~---f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G--~dvi~~A~TGsGKTl 188 (211)
........+.-.+...|+++ |++| +|.|+|+++|..++|..|+.||+.|+|.+|.. +++|+++.+|||||.
T Consensus 69 l~~~~~~~vk~~dpnsPlyS~ksFeeL----~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTa 144 (477)
T KOG0332|consen 69 LNKFIESNVKLADPNSPLYSAKSFEEL----RLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTA 144 (477)
T ss_pred hcchhhhceeecCCCCCccccccHHhh----CCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhH
Confidence 33333344444456677775 5555 99999999999999999999999999999987 799999999999999
Q ss_pred HhHHHHHHHHhcccCCCceEEeC
Q 028267 189 AFLCPMLMKLRVLFIPFDYFCEL 211 (211)
Q Consensus 189 af~lPil~~l~~~~~~~~~~~~~ 211 (211)
||+|.+|.++...-.-.++.|+.
T Consensus 145 aFvL~MLsrvd~~~~~PQ~iCLa 167 (477)
T KOG0332|consen 145 AFVLTMLSRVDPDVVVPQCICLA 167 (477)
T ss_pred HHHHHHHHhcCccccCCCceeeC
Confidence 99999999999998899999984
No 26
>PTZ00424 helicase 45; Provisional
Probab=99.51 E-value=4.4e-14 Score=127.88 Aligned_cols=67 Identities=27% Similarity=0.457 Sum_probs=62.2
Q ss_pred chhhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhcc
Q 028267 131 LRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVL 201 (211)
Q Consensus 131 ~~~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~ 201 (211)
..+|.++ +|++.++++|...||..|+|+|.++|+.++.|+|++++||||||||++|++|++..+...
T Consensus 27 ~~~~~~l----~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~ 93 (401)
T PTZ00424 27 VDSFDAL----KLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD 93 (401)
T ss_pred cCCHhhC----CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC
Confidence 4566666 999999999999999999999999999999999999999999999999999999998643
No 27
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.51 E-value=6.5e-15 Score=138.03 Aligned_cols=66 Identities=41% Similarity=0.595 Sum_probs=62.2
Q ss_pred hhhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhcc
Q 028267 132 RTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVL 201 (211)
Q Consensus 132 ~~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~ 201 (211)
.-|.++ +|+..++++|++.+|..||.||..+||..|.|+|||+.|.|||||||||++|+|++|.+.
T Consensus 69 ~kF~dl----pls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~ 134 (758)
T KOG0343|consen 69 KKFADL----PLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRL 134 (758)
T ss_pred hhHHhC----CCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHc
Confidence 345555 999999999999999999999999999999999999999999999999999999999876
No 28
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.49 E-value=6.2e-14 Score=137.72 Aligned_cols=64 Identities=23% Similarity=0.224 Sum_probs=59.7
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhcccCCC
Q 028267 142 GCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVLFIPF 205 (211)
Q Consensus 142 ~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~~~~ 205 (211)
.|++.|+++|.++||..||+||++|||.++.|+|+|++||||||||+||+||+|+.|...+...
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~ 83 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPRAT 83 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcE
Confidence 5899999999999999999999999999999999999999999999999999999998755433
No 29
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.48 E-value=2.5e-14 Score=133.13 Aligned_cols=86 Identities=38% Similarity=0.658 Sum_probs=80.7
Q ss_pred HHHHhhcCceeccCCCCCCchhhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhH
Q 028267 112 AVFRKKYNIHVSGANVPSPLRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFL 191 (211)
Q Consensus 112 ~~~~~~~~i~v~g~~~p~p~~~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~ 191 (211)
...+...++.|.|..+|.|+.+|..+ ++...|+.+++..-|+.|||||.+++|..|.|+||+++|.||||||.||+
T Consensus 203 ~~~r~~Lnlrv~g~s~~rpvtsfeh~----gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi 278 (731)
T KOG0339|consen 203 IDLRLTLNLRVSGSSPPRPVTSFEHF----GFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFI 278 (731)
T ss_pred hhhHhhhcceeccCCCCCCcchhhhc----CchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHH
Confidence 45667788999999999999999888 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcc
Q 028267 192 CPMLMKLRVL 201 (211)
Q Consensus 192 lPil~~l~~~ 201 (211)
+|++.++...
T Consensus 279 ~pm~~himdq 288 (731)
T KOG0339|consen 279 WPMIVHIMDQ 288 (731)
T ss_pred HHHHHHhcch
Confidence 9999998655
No 30
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=2.3e-14 Score=125.68 Aligned_cols=80 Identities=30% Similarity=0.476 Sum_probs=72.4
Q ss_pred CCCCchhhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhcccCCCc
Q 028267 127 VPSPLRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVLFIPFD 206 (211)
Q Consensus 127 ~p~p~~~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~~~~~ 206 (211)
--.++.+|+++ +|.+.||+++.+.||..|+.||+.|||+++.|+|||++|.+|+|||.+|.+.+|+.+.-.-+..+
T Consensus 22 ~~~v~~~F~~M----gl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ 97 (400)
T KOG0328|consen 22 KVKVIPTFDDM----GLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQ 97 (400)
T ss_pred Ccccccchhhc----CchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceee
Confidence 33456678887 99999999999999999999999999999999999999999999999999999999988777777
Q ss_pred eEEe
Q 028267 207 YFCE 210 (211)
Q Consensus 207 ~~~~ 210 (211)
.+++
T Consensus 98 ~lil 101 (400)
T KOG0328|consen 98 ALIL 101 (400)
T ss_pred EEEe
Confidence 7664
No 31
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.43 E-value=1.6e-14 Score=128.48 Aligned_cols=72 Identities=31% Similarity=0.487 Sum_probs=65.0
Q ss_pred ccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhcccCCCceEEe
Q 028267 139 SRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVLFIPFDYFCE 210 (211)
Q Consensus 139 ~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~~~~~~~~~ 210 (211)
+.|.|.+.||..+.+.||..|+|||..+||.+|.|+|+++.|..|+|||.||+||+|+++......-+.+++
T Consensus 88 Ed~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~il 159 (459)
T KOG0326|consen 88 EDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIIL 159 (459)
T ss_pred HHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEE
Confidence 344999999999999999999999999999999999999999999999999999999999876655555544
No 32
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.42 E-value=8.7e-14 Score=128.80 Aligned_cols=63 Identities=40% Similarity=0.658 Sum_probs=59.5
Q ss_pred ccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhcc
Q 028267 139 SRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVL 201 (211)
Q Consensus 139 ~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~ 201 (211)
..+.|++.++++|.++||..+|+||+.+||++|.|+|+++.|.||||||+||+||.++.+...
T Consensus 85 ~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~ 147 (543)
T KOG0342|consen 85 EEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKL 147 (543)
T ss_pred hccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhc
Confidence 444999999999999999999999999999999999999999999999999999999998654
No 33
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.40 E-value=1.1e-12 Score=107.85 Aligned_cols=63 Identities=51% Similarity=0.760 Sum_probs=60.3
Q ss_pred ccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhcc
Q 028267 139 SRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVL 201 (211)
Q Consensus 139 ~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~ 201 (211)
+++++++.+++.|.+.||..|+++|.++|+.++.|+|++++|+||+|||++|++|+++.+...
T Consensus 2 ~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~ 64 (203)
T cd00268 2 EELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPS 64 (203)
T ss_pred CcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhh
Confidence 456999999999999999999999999999999999999999999999999999999999876
No 34
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.40 E-value=1.7e-13 Score=125.28 Aligned_cols=66 Identities=44% Similarity=0.741 Sum_probs=62.3
Q ss_pred hhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhccc
Q 028267 133 TFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVLF 202 (211)
Q Consensus 133 ~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~ 202 (211)
+|..+ ||+..++++|...||..|||||..+||.+|.|+|+++.|+||||||+||+||++++|...-
T Consensus 22 ~fqsm----gL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s 87 (529)
T KOG0337|consen 22 GFQSM----GLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS 87 (529)
T ss_pred Ccccc----CCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc
Confidence 45555 9999999999999999999999999999999999999999999999999999999998765
No 35
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=5.2e-13 Score=120.52 Aligned_cols=70 Identities=29% Similarity=0.510 Sum_probs=63.7
Q ss_pred CCchhhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhccc
Q 028267 129 SPLRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVLF 202 (211)
Q Consensus 129 ~p~~~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~ 202 (211)
.-+.+|+++ +|++.||+.+...||..||.||+.||+++..|+|++++|++|||||+||++++++++.-..
T Consensus 23 evvdsfddm----~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ 92 (397)
T KOG0327|consen 23 EVVDSFDDM----NLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSV 92 (397)
T ss_pred HHhhhhhhc----CCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcch
Confidence 344577777 9999999999999999999999999999999999999999999999999999999975433
No 36
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.32 E-value=3.5e-12 Score=125.56 Aligned_cols=69 Identities=29% Similarity=0.323 Sum_probs=62.7
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhccc---CCCceEEeC
Q 028267 142 GCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVLF---IPFDYFCEL 211 (211)
Q Consensus 142 ~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~---~~~~~~~~~ 211 (211)
-|++.+.+.+... |+.|||+|.+|||.+++|+|++++||||||||+|..||+|..|.... ....++|+|
T Consensus 7 ~l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lY 78 (814)
T COG1201 7 ILDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALY 78 (814)
T ss_pred hcCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEE
Confidence 4789999999888 99999999999999999999999999999999999999999998883 335688875
No 37
>PRK02362 ski2-like helicase; Provisional
Probab=99.29 E-value=6.9e-12 Score=123.11 Aligned_cols=63 Identities=29% Similarity=0.329 Sum_probs=58.7
Q ss_pred hhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhh-HhcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 134 FVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPV-LLSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 134 f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~-il~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
|+++ +|++.++++|...||..|+|+|.+||+. ++.|+|+|++||||||||++|.+|++..+..
T Consensus 3 ~~~l----~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~ 66 (737)
T PRK02362 3 IAEL----PLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR 66 (737)
T ss_pred hhhc----CCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc
Confidence 4555 9999999999999999999999999998 7899999999999999999999999999863
No 38
>PRK00254 ski2-like helicase; Provisional
Probab=99.24 E-value=2.1e-11 Score=119.35 Aligned_cols=65 Identities=31% Similarity=0.318 Sum_probs=59.6
Q ss_pred hhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhh-HhcCCcEEEEcCCCchhHHHhHHHHHHHHhcc
Q 028267 133 TFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPV-LLSDRECFACAPTGSGKTLAFLCPMLMKLRVL 201 (211)
Q Consensus 133 ~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~-il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~ 201 (211)
.|.++ +|++.+++.|...||..|+|+|.++|+. ++.|+|++++||||||||++|.+|++..+...
T Consensus 2 ~~~~l----~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~ 67 (720)
T PRK00254 2 KVDEL----RVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE 67 (720)
T ss_pred cHHHc----CCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc
Confidence 35555 8999999999999999999999999986 89999999999999999999999999998753
No 39
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.23 E-value=3.4e-12 Score=110.98 Aligned_cols=84 Identities=21% Similarity=0.347 Sum_probs=73.6
Q ss_pred eccCCCCCCchhhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhcc
Q 028267 122 VSGANVPSPLRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVL 201 (211)
Q Consensus 122 v~g~~~p~p~~~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~ 201 (211)
..|+.+..+...|.++ .|.|+|++++.++||.+|+.+|..+||...-|.|++++|.+|.|||..|+|..|++|.+.
T Consensus 32 ~kgsyv~ihssgfrdf----llkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv 107 (387)
T KOG0329|consen 32 KKGSYVSIHSSGFRDF----LLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPV 107 (387)
T ss_pred ccCcEEEEeccchhhh----hcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCC
Confidence 3456666666677776 899999999999999999999999999999999999999999999999999999999887
Q ss_pred cCCCceEE
Q 028267 202 FIPFDYFC 209 (211)
Q Consensus 202 ~~~~~~~~ 209 (211)
++.-.++|
T Consensus 108 ~g~vsvlv 115 (387)
T KOG0329|consen 108 DGQVSVLV 115 (387)
T ss_pred CCeEEEEE
Confidence 76655444
No 40
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.22 E-value=2.2e-11 Score=121.76 Aligned_cols=59 Identities=34% Similarity=0.464 Sum_probs=52.6
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhcc
Q 028267 142 GCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVL 201 (211)
Q Consensus 142 ~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~ 201 (211)
.|++.+...+.. +|..|||+|.+|||.++.|+|+|++||||||||++|++|+++.|...
T Consensus 17 ~l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~ 75 (876)
T PRK13767 17 LLRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRL 75 (876)
T ss_pred hcCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhh
Confidence 366766666554 89999999999999999999999999999999999999999998754
No 41
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.17 E-value=1.7e-11 Score=114.19 Aligned_cols=66 Identities=30% Similarity=0.415 Sum_probs=56.5
Q ss_pred CHHHHHHHHHcCCCCCcHHHHHHHhhHh---------cCCcEEEEcCCCchhHHHhHHHHHHHHhcccCCCceEEe
Q 028267 144 ESYLLRNLAELGYKEPTPIQRQAIPVLL---------SDRECFACAPTGSGKTLAFLCPMLMKLRVLFIPFDYFCE 210 (211)
Q Consensus 144 ~~~ll~~l~~~g~~~pt~iQ~~aip~il---------~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~~~~~~~~~ 210 (211)
...+.++|..+++...||||.+.+|.+| .++||+|.|+|||||||||+|||++.|...+.+. +-|+
T Consensus 145 ea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~-LRav 219 (620)
T KOG0350|consen 145 EATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKR-LRAV 219 (620)
T ss_pred HHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccc-eEEE
Confidence 3446677999999999999999999874 3789999999999999999999999999887765 4443
No 42
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.09 E-value=2.4e-11 Score=116.10 Aligned_cols=78 Identities=26% Similarity=0.259 Sum_probs=68.4
Q ss_pred CCCCCchhhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhcccCCC
Q 028267 126 NVPSPLRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVLFIPF 205 (211)
Q Consensus 126 ~~p~p~~~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~~~~ 205 (211)
..+.....|+++ .|...++..|+.+||..||+||+.|||+++.|.|+|++|.+||||||.|.+-+++.|.......
T Consensus 19 V~~~~~~~fe~l----~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~ 94 (980)
T KOG4284|consen 19 VQSNCTPGFEQL----ALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHI 94 (980)
T ss_pred cccCCCCCHHHH----HHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcc
Confidence 335556678888 8999999999999999999999999999999999999999999999999999999987664443
Q ss_pred ce
Q 028267 206 DY 207 (211)
Q Consensus 206 ~~ 207 (211)
+.
T Consensus 95 q~ 96 (980)
T KOG4284|consen 95 QK 96 (980)
T ss_pred ee
Confidence 33
No 43
>PRK01172 ski2-like helicase; Provisional
Probab=99.08 E-value=3e-10 Score=110.41 Aligned_cols=59 Identities=22% Similarity=0.291 Sum_probs=56.2
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 141 FGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 141 ~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
++|++.+++.+...||. |+++|.++|+.++.|+|++++||||||||++|.++++..+..
T Consensus 6 ~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~ 64 (674)
T PRK01172 6 LGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA 64 (674)
T ss_pred cCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh
Confidence 49999999999999997 999999999999999999999999999999999999998875
No 44
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.01 E-value=5.3e-10 Score=111.48 Aligned_cols=66 Identities=26% Similarity=0.258 Sum_probs=60.0
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhcccCCCceE
Q 028267 143 CESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVLFIPFDYF 208 (211)
Q Consensus 143 l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~~~~~~~ 208 (211)
....+..+|...|+..|+++|.+||-.+..|+|||++++||||||++|+|||++++.+.+...++|
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~ 120 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALL 120 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEE
Confidence 455678889999999999999999999999999999999999999999999999999988775554
No 45
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.01 E-value=3.5e-10 Score=105.67 Aligned_cols=44 Identities=36% Similarity=0.706 Sum_probs=41.9
Q ss_pred HcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHH
Q 028267 153 ELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLM 196 (211)
Q Consensus 153 ~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~ 196 (211)
..||..|+|+|.++|+.++.|+|+++++|||||||++|++|++.
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~ 49 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALC 49 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHH
Confidence 46999999999999999999999999999999999999999875
No 46
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=98.97 E-value=1.1e-09 Score=105.53 Aligned_cols=55 Identities=38% Similarity=0.661 Sum_probs=46.5
Q ss_pred CCHHHHHHHHH-cCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHH
Q 028267 143 CESYLLRNLAE-LGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMK 197 (211)
Q Consensus 143 l~~~ll~~l~~-~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~ 197 (211)
+.......|.. .||..|+|+|..+|+.++.|+|+++++|||+|||++|++|++..
T Consensus 9 ~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~ 64 (607)
T PRK11057 9 LESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL 64 (607)
T ss_pred chhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc
Confidence 33334444433 59999999999999999999999999999999999999998854
No 47
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=98.93 E-value=1.5e-09 Score=108.04 Aligned_cols=62 Identities=24% Similarity=0.410 Sum_probs=57.2
Q ss_pred ccCCCCHHHHHHHH-----HcCCCCC---cHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 139 SRFGCESYLLRNLA-----ELGYKEP---TPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 139 ~~~~l~~~ll~~l~-----~~g~~~p---t~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
+.|.+.+.+.+.+. .+||..| +|+|.++||.++.|+|+|++++||||||+||+||++.++..
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~ 134 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT 134 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh
Confidence 45689999988887 7899999 99999999999999999999999999999999999998864
No 48
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=98.91 E-value=2.1e-09 Score=108.83 Aligned_cols=58 Identities=31% Similarity=0.454 Sum_probs=50.2
Q ss_pred cCCCCHHHHHHHHH-cCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHH
Q 028267 140 RFGCESYLLRNLAE-LGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMK 197 (211)
Q Consensus 140 ~~~l~~~ll~~l~~-~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~ 197 (211)
.|.....|...+.. .||..++|+|.++|++++.|+|+|+++|||+|||++|+||+|..
T Consensus 441 ~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~ 499 (1195)
T PLN03137 441 NFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC 499 (1195)
T ss_pred CCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc
Confidence 45666666665543 69999999999999999999999999999999999999999853
No 49
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=98.88 E-value=2.1e-09 Score=103.09 Aligned_cols=44 Identities=34% Similarity=0.669 Sum_probs=42.1
Q ss_pred cCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHH
Q 028267 154 LGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMK 197 (211)
Q Consensus 154 ~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~ 197 (211)
.||..++|+|.++|+.++.|+|+++++|||+|||++|++|++..
T Consensus 9 fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~ 52 (591)
T TIGR01389 9 FGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL 52 (591)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc
Confidence 79999999999999999999999999999999999999999853
No 50
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=98.84 E-value=1e-09 Score=101.40 Aligned_cols=62 Identities=37% Similarity=0.506 Sum_probs=57.7
Q ss_pred ccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 139 SRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 139 ~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
++|++-|+|-.+..++.+.-||.||+.+||.||.|-|++..|.||||||-||+||||+-+-+
T Consensus 5 ~e~gv~pel~~a~~e~dw~lptdvqaeaiplilgggdvlmaaetgsgktgaf~lpilqiv~e 66 (725)
T KOG0349|consen 5 EEFGVLPELGMATDELDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQIVWE 66 (725)
T ss_pred HhhCcchHhhhhhhhhccccccccccccccEEecCCcEEEEeccCCCCccceehhhHHHHHH
Confidence 44599999999999999999999999999999999999999999999999999999987643
No 51
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=98.64 E-value=7e-08 Score=99.29 Aligned_cols=53 Identities=28% Similarity=0.221 Sum_probs=44.8
Q ss_pred HHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 147 LLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 147 ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
+.+.+.......||+||+.+||.++.|+|++++||||||||+ |++|++..+..
T Consensus 67 f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~ 119 (1171)
T TIGR01054 67 FEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK 119 (1171)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh
Confidence 344455555568999999999999999999999999999997 88898887754
No 52
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=98.63 E-value=4.1e-08 Score=97.50 Aligned_cols=41 Identities=29% Similarity=0.387 Sum_probs=36.6
Q ss_pred cCCCCCcHHHHHHHhhHhcCC-cEEEEcCCCchhHHHhHHHHH
Q 028267 154 LGYKEPTPIQRQAIPVLLSDR-ECFACAPTGSGKTLAFLCPML 195 (211)
Q Consensus 154 ~g~~~pt~iQ~~aip~il~G~-dvi~~A~TGsGKTlaf~lPil 195 (211)
.||. |||||.++||.++.|+ +++++|+||||||++|+++++
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll 53 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLL 53 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhc
Confidence 5898 9999999999999998 688889999999997776665
No 53
>PRK14701 reverse gyrase; Provisional
Probab=98.52 E-value=2.1e-07 Score=98.20 Aligned_cols=51 Identities=24% Similarity=0.199 Sum_probs=42.0
Q ss_pred HHHHHHHH-cCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHH
Q 028267 146 YLLRNLAE-LGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMK 197 (211)
Q Consensus 146 ~ll~~l~~-~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~ 197 (211)
.+.+.+.. .|| .||++|..+||.++.|+|++++||||||||+.++++.+..
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~ 118 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFL 118 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHH
Confidence 34455655 899 6999999999999999999999999999999655555443
No 54
>PRK09401 reverse gyrase; Reviewed
Probab=98.48 E-value=2.8e-07 Score=94.88 Aligned_cols=45 Identities=36% Similarity=0.349 Sum_probs=40.0
Q ss_pred cCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 154 LGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 154 ~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
.|+ .||++|..+||.++.|+|++++||||||||+ |++|++..+..
T Consensus 77 ~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~ 121 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK 121 (1176)
T ss_pred cCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh
Confidence 467 8999999999999999999999999999995 77887777654
No 55
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=98.45 E-value=3.9e-07 Score=91.91 Aligned_cols=57 Identities=21% Similarity=0.279 Sum_probs=48.0
Q ss_pred CCHHHHHHHHH-cCCCCCcHHHHHHHhhHhcC------CcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 143 CESYLLRNLAE-LGYKEPTPIQRQAIPVLLSD------RECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 143 l~~~ll~~l~~-~g~~~pt~iQ~~aip~il~G------~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
.+..++..+.+ .+| .|||+|..||+.++.+ +|+++||+||||||++|++|++..+..
T Consensus 436 ~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~ 499 (926)
T TIGR00580 436 PDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD 499 (926)
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh
Confidence 34455566655 588 5999999999999985 799999999999999999999998865
No 56
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=98.45 E-value=4.6e-07 Score=87.88 Aligned_cols=53 Identities=30% Similarity=0.389 Sum_probs=46.3
Q ss_pred HHHHHHHcCCCCCcHHHHHHHhhHhcC------CcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 147 LLRNLAELGYKEPTPIQRQAIPVLLSD------RECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 147 ll~~l~~~g~~~pt~iQ~~aip~il~G------~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
+...+...+| .||++|..||+.++.+ .+.+++|+||||||++|++|++..+..
T Consensus 225 ~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~ 283 (630)
T TIGR00643 225 LTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA 283 (630)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 4455678899 7999999999999887 368999999999999999999998864
No 57
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=98.36 E-value=1.2e-06 Score=85.90 Aligned_cols=54 Identities=28% Similarity=0.386 Sum_probs=45.4
Q ss_pred HHHHHH-HHcCCCCCcHHHHHHHhhHhcC------CcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 146 YLLRNL-AELGYKEPTPIQRQAIPVLLSD------RECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 146 ~ll~~l-~~~g~~~pt~iQ~~aip~il~G------~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
.+++.+ ...+| .||++|..||+.++.+ .++|++|+||||||++|++|++..+..
T Consensus 249 ~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~ 309 (681)
T PRK10917 249 ELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA 309 (681)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 344443 55677 6999999999999887 489999999999999999999998864
No 58
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=98.34 E-value=8.7e-07 Score=86.25 Aligned_cols=44 Identities=34% Similarity=0.278 Sum_probs=40.0
Q ss_pred cCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 154 LGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 154 ~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
.|. .||+||..++|.++.|+ |+++.||+|||++|++|++.....
T Consensus 100 lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~ 143 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA 143 (656)
T ss_pred hCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc
Confidence 344 79999999999999999 899999999999999999988654
No 59
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=98.30 E-value=1.4e-06 Score=68.99 Aligned_cols=50 Identities=46% Similarity=0.646 Sum_probs=45.7
Q ss_pred HcCCCCCcHHHHHHHhhHhcC-CcEEEEcCCCchhHHHhHHHHHHHHhccc
Q 028267 153 ELGYKEPTPIQRQAIPVLLSD-RECFACAPTGSGKTLAFLCPMLMKLRVLF 202 (211)
Q Consensus 153 ~~g~~~pt~iQ~~aip~il~G-~dvi~~A~TGsGKTlaf~lPil~~l~~~~ 202 (211)
..++..|++.|.+++..++.+ +.++++++||||||.+++++++..+....
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~ 53 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK 53 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC
Confidence 356888999999999999999 99999999999999999999999988754
No 60
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=98.28 E-value=1.8e-06 Score=86.44 Aligned_cols=56 Identities=32% Similarity=0.444 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHh----hHhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 143 CESYLLRNLAELGYKEPTPIQRQAIP----VLLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 143 l~~~ll~~l~~~g~~~pt~iQ~~aip----~il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+++.+...+...||. +.|.|.+.+. .+..|+++++.|+||+|||+||++|++..+.
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~ 290 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI 290 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc
Confidence 445677888889997 7899998776 4567899999999999999999999998876
No 61
>PRK10689 transcription-repair coupling factor; Provisional
Probab=98.27 E-value=1.7e-06 Score=89.01 Aligned_cols=52 Identities=29% Similarity=0.387 Sum_probs=45.0
Q ss_pred HHHHHHHcCCCCCcHHHHHHHhhHhcC------CcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 147 LLRNLAELGYKEPTPIQRQAIPVLLSD------RECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 147 ll~~l~~~g~~~pt~iQ~~aip~il~G------~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
..+.....+| .||++|..||+.++.+ +|+++||+||+|||++|+++++..+.
T Consensus 590 ~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~ 647 (1147)
T PRK10689 590 YQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE 647 (1147)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH
Confidence 3444577788 7999999999999987 89999999999999999988877664
No 62
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.26 E-value=1.7e-06 Score=76.43 Aligned_cols=45 Identities=40% Similarity=0.532 Sum_probs=37.9
Q ss_pred CcHHHHHHH----hhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhcccC
Q 028267 159 PTPIQRQAI----PVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVLFI 203 (211)
Q Consensus 159 pt~iQ~~ai----p~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~~ 203 (211)
|+|+|.+.+ ..+..|.++|+.||||+|||++|++|++..+.....
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~ 57 (289)
T smart00489 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPE 57 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcc
Confidence 689999944 456678999999999999999999999988776544
No 63
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.26 E-value=1.7e-06 Score=76.43 Aligned_cols=45 Identities=40% Similarity=0.532 Sum_probs=37.9
Q ss_pred CcHHHHHHH----hhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhcccC
Q 028267 159 PTPIQRQAI----PVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVLFI 203 (211)
Q Consensus 159 pt~iQ~~ai----p~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~~ 203 (211)
|+|+|.+.+ ..+..|.++|+.||||+|||++|++|++..+.....
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~ 57 (289)
T smart00488 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPE 57 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcc
Confidence 689999944 456678999999999999999999999988776544
No 64
>PHA02653 RNA helicase NPH-II; Provisional
Probab=98.02 E-value=5.7e-06 Score=81.09 Aligned_cols=38 Identities=24% Similarity=0.293 Sum_probs=34.4
Q ss_pred HHHHHHhhHhcCCcEEEEcCCCchhHHH---------hHHHHHHHHh
Q 028267 162 IQRQAIPVLLSDRECFACAPTGSGKTLA---------FLCPMLMKLR 199 (211)
Q Consensus 162 iQ~~aip~il~G~dvi~~A~TGsGKTla---------f~lPil~~l~ 199 (211)
||.+.++.++.|+|+|++|+||||||.+ |++|.+..+.
T Consensus 168 iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~ 214 (675)
T PHA02653 168 VQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLD 214 (675)
T ss_pred HHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhh
Confidence 9999999999999999999999999997 6677777664
No 65
>COG1204 Superfamily II helicase [General function prediction only]
Probab=97.98 E-value=9.2e-06 Score=80.64 Aligned_cols=60 Identities=37% Similarity=0.377 Sum_probs=52.1
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHhh-HhcCCcEEEEcCCCchhHHHhHHHHHHHHhcc
Q 028267 142 GCESYLLRNLAELGYKEPTPIQRQAIPV-LLSDRECFACAPTGSGKTLAFLCPMLMKLRVL 201 (211)
Q Consensus 142 ~l~~~ll~~l~~~g~~~pt~iQ~~aip~-il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~ 201 (211)
.+++.++..+...|+..+++-|+.++.. ++.|.|+|+|||||||||+...+.|++.+...
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~ 75 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG 75 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc
Confidence 3777888888999998888877777765 55679999999999999999999999999976
No 66
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=97.94 E-value=1.4e-05 Score=76.62 Aligned_cols=62 Identities=26% Similarity=0.237 Sum_probs=56.4
Q ss_pred cCCCCHHHHHHHHHcCCCCCcHHHHHHHhh-HhcCCcEEEEcCCCchhHHHhHHHHHHHHhcc
Q 028267 140 RFGCESYLLRNLAELGYKEPTPIQRQAIPV-LLSDRECFACAPTGSGKTLAFLCPMLMKLRVL 201 (211)
Q Consensus 140 ~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~-il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~ 201 (211)
++.||+.+.+.|...|++.+.|+|..|+.. +|.|.|+++++.|+|||||.--|.-|.+++..
T Consensus 198 eLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~ 260 (830)
T COG1202 198 ELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSG 260 (830)
T ss_pred ccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhC
Confidence 349999999999999999999999999987 78999999999999999999888888887763
No 67
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=97.88 E-value=2e-05 Score=78.38 Aligned_cols=46 Identities=30% Similarity=0.352 Sum_probs=40.0
Q ss_pred HHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 152 AELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 152 ~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
+..|. .|+++|..++++++.|+ |+++.||+|||++|++|++.....
T Consensus 73 R~~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~ 118 (790)
T PRK09200 73 RVLGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE 118 (790)
T ss_pred HHhCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc
Confidence 33466 89999999999999998 899999999999999999865543
No 68
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=97.86 E-value=1.1e-05 Score=81.02 Aligned_cols=48 Identities=31% Similarity=0.501 Sum_probs=43.8
Q ss_pred cCCCCCcHHHHHHHhhHhcC-CcEEEEcCCCchhHHHhHHHHHHHHhcc
Q 028267 154 LGYKEPTPIQRQAIPVLLSD-RECFACAPTGSGKTLAFLCPMLMKLRVL 201 (211)
Q Consensus 154 ~g~~~pt~iQ~~aip~il~G-~dvi~~A~TGsGKTlaf~lPil~~l~~~ 201 (211)
.+|+.+..||..++|.++.. -|+|+|||||||||..|+|.||..+...
T Consensus 106 f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~ 154 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEH 154 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhh
Confidence 46888999999999999865 7999999999999999999999999863
No 69
>PRK05580 primosome assembly protein PriA; Validated
Probab=97.76 E-value=9e-05 Score=72.77 Aligned_cols=43 Identities=26% Similarity=0.262 Sum_probs=38.5
Q ss_pred CCcHHHHHHHhhHhcC---CcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 158 EPTPIQRQAIPVLLSD---RECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 158 ~pt~iQ~~aip~il~G---~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
.||+.|.+++..++.+ .+++++|+||||||.+|+.++...+..
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~ 189 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ 189 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc
Confidence 4899999999999874 889999999999999999988877764
No 70
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=97.76 E-value=3.6e-05 Score=76.15 Aligned_cols=46 Identities=30% Similarity=0.318 Sum_probs=37.8
Q ss_pred HHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 152 AELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 152 ~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
+..|. .|+++|..++..+..| .|++++||+|||++|++|++.+...
T Consensus 65 R~lgl-rpydVQlig~l~l~~G--~Iaem~TGeGKTLta~Lpa~l~aL~ 110 (762)
T TIGR03714 65 RVLGM-FPYDVQVLGAIVLHQG--NIAEMKTGEGKTLTATMPLYLNALT 110 (762)
T ss_pred hhcCC-CccHHHHHHHHHhcCC--ceeEecCCcchHHHHHHHHHHHhhc
Confidence 34465 7888888888877777 6999999999999999998877654
No 71
>PHA02558 uvsW UvsW helicase; Provisional
Probab=97.72 E-value=6.5e-05 Score=71.07 Aligned_cols=37 Identities=27% Similarity=0.213 Sum_probs=33.7
Q ss_pred CCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHH
Q 028267 156 YKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLC 192 (211)
Q Consensus 156 ~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~l 192 (211)
...|+++|..|++.++.+.++|++++||+|||+++++
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~ 148 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYL 148 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHH
Confidence 4589999999999999999999999999999997654
No 72
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=97.70 E-value=4.5e-05 Score=75.27 Aligned_cols=43 Identities=33% Similarity=0.342 Sum_probs=37.5
Q ss_pred cCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHH-HHHh
Q 028267 154 LGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPML-MKLR 199 (211)
Q Consensus 154 ~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil-~~l~ 199 (211)
.|. .|+++|..+++.++.|+ |++++||+|||++|++|++ ..|.
T Consensus 53 lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~ 96 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT 96 (745)
T ss_pred hCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh
Confidence 354 79999999999999887 9999999999999999995 5554
No 73
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=97.44 E-value=0.00011 Score=70.92 Aligned_cols=44 Identities=36% Similarity=0.662 Sum_probs=41.8
Q ss_pred cCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHH
Q 028267 154 LGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMK 197 (211)
Q Consensus 154 ~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~ 197 (211)
.||....|-|..+|..+++|+|+++.-|||.||+++|.||.+-.
T Consensus 13 fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~ 56 (590)
T COG0514 13 FGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL 56 (590)
T ss_pred hCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc
Confidence 48999999999999999999999999999999999999998765
No 74
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.31 E-value=0.0003 Score=70.53 Aligned_cols=47 Identities=34% Similarity=0.488 Sum_probs=36.7
Q ss_pred HHHcCCCCCcHHHHHHHhhH----hcCCcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 151 LAELGYKEPTPIQRQAIPVL----LSDRECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 151 l~~~g~~~pt~iQ~~aip~i----l~G~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
+.--|| .+.+.|......+ ..|..++++|+||||||+||++|++...
T Consensus 239 ~~~~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~ 289 (820)
T PRK07246 239 IALLGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS 289 (820)
T ss_pred hccCCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc
Confidence 334466 4688888855443 4578899999999999999999999865
No 75
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=97.29 E-value=0.00064 Score=65.99 Aligned_cols=50 Identities=36% Similarity=0.410 Sum_probs=39.9
Q ss_pred HcCCCCCcHHHHHHHhhH----hcCCcEEEEcCCCchhHHHhHHHHHHHHhccc
Q 028267 153 ELGYKEPTPIQRQAIPVL----LSDRECFACAPTGSGKTLAFLCPMLMKLRVLF 202 (211)
Q Consensus 153 ~~g~~~pt~iQ~~aip~i----l~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~ 202 (211)
....-.|.+.|.+++-.+ ..|+.+++.||||+|||++|++|+|.......
T Consensus 10 ~~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~ 63 (654)
T COG1199 10 AFPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREEG 63 (654)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHcC
Confidence 344567899999888643 34566999999999999999999999876543
No 76
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=97.29 E-value=0.0002 Score=66.73 Aligned_cols=51 Identities=29% Similarity=0.573 Sum_probs=40.4
Q ss_pred HHHHHHH-cCCCC-CcHHHHHHHhhHhcC-CcEEEEcCCCchhHHHhHHHHHHH
Q 028267 147 LLRNLAE-LGYKE-PTPIQRQAIPVLLSD-RECFACAPTGSGKTLAFLCPMLMK 197 (211)
Q Consensus 147 ll~~l~~-~g~~~-pt~iQ~~aip~il~G-~dvi~~A~TGsGKTlaf~lPil~~ 197 (211)
+..+|.. .||.. -|+.|.+|+..+..+ .||.|+.|||+||.|+|.||.|..
T Consensus 7 VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~ 60 (641)
T KOG0352|consen 7 VREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH 60 (641)
T ss_pred HHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh
Confidence 3444533 25544 378999999998877 799999999999999999998764
No 77
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.23 E-value=0.00055 Score=67.44 Aligned_cols=47 Identities=28% Similarity=0.338 Sum_probs=39.2
Q ss_pred CCCCcHHHHHHHhh----HhcCCcEEEEcCCCchhHHHhHHHHHHHHhccc
Q 028267 156 YKEPTPIQRQAIPV----LLSDRECFACAPTGSGKTLAFLCPMLMKLRVLF 202 (211)
Q Consensus 156 ~~~pt~iQ~~aip~----il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~ 202 (211)
|..+.|.|.+.+-. +..|.++++.||||+|||++.+.|.|..+...+
T Consensus 8 y~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~ 58 (705)
T TIGR00604 8 YEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP 58 (705)
T ss_pred CCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc
Confidence 56668889887765 457889999999999999999999999877544
No 78
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=97.18 E-value=0.00098 Score=65.76 Aligned_cols=45 Identities=36% Similarity=0.410 Sum_probs=35.0
Q ss_pred CCCCCcHHHHHHHhhHh---c------CCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 155 GYKEPTPIQRQAIPVLL---S------DRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 155 g~~~pt~iQ~~aip~il---~------G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
|| .+.+-|.+.+-.|. . +..+++-|+||+|||+||++|.+-....
T Consensus 23 ~~-e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~ 76 (697)
T PRK11747 23 GF-IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARA 76 (697)
T ss_pred CC-CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHH
Confidence 55 56788888665543 3 3679999999999999999999876553
No 79
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.16 E-value=0.0006 Score=69.22 Aligned_cols=45 Identities=27% Similarity=0.360 Sum_probs=36.5
Q ss_pred CCCCCcHHHHHHHhhH----hcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 155 GYKEPTPIQRQAIPVL----LSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 155 g~~~pt~iQ~~aip~i----l~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
|| .+.|-|.+.+..+ -.+..+++-|+||+|||+||++|++.....
T Consensus 255 ~~-e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~ 303 (928)
T PRK08074 255 KY-EKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKK 303 (928)
T ss_pred CC-cCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhc
Confidence 45 5788888866544 467899999999999999999999876653
No 80
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=97.08 E-value=0.00062 Score=62.84 Aligned_cols=58 Identities=28% Similarity=0.402 Sum_probs=47.9
Q ss_pred ccCCCCHHHHHHHHHc-CCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHH
Q 028267 139 SRFGCESYLLRNLAEL-GYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLM 196 (211)
Q Consensus 139 ~~~~l~~~ll~~l~~~-g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~ 196 (211)
+.|+.+......|... ......|.|..+|.+.+.|.|++++-|||-||.|+|.||.|.
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~ 132 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALC 132 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHh
Confidence 3457777666655443 356778999999999999999999999999999999999874
No 81
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=96.99 E-value=0.00093 Score=65.87 Aligned_cols=60 Identities=18% Similarity=0.092 Sum_probs=47.3
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhcccC
Q 028267 143 CESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVLFI 203 (211)
Q Consensus 143 l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~~ 203 (211)
+.+...+.+.--+.-.+...|..-...+| |+++|+++|||+|||+..+.-++.++...+.
T Consensus 47 ~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~ 106 (746)
T KOG0354|consen 47 LDESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPK 106 (746)
T ss_pred CChhhhccccccCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCc
Confidence 44444444443445566778888888888 9999999999999999999999999987765
No 82
>PRK13766 Hef nuclease; Provisional
Probab=96.95 E-value=0.0015 Score=64.71 Aligned_cols=44 Identities=25% Similarity=0.249 Sum_probs=38.6
Q ss_pred CCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 155 GYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 155 g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+.-.|.+.|...+..++.+ |+|++++||+|||++++++++..+.
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~ 55 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH 55 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH
Confidence 3447888999998888887 8999999999999999999998884
No 83
>PRK09694 helicase Cas3; Provisional
Probab=96.79 E-value=0.0023 Score=64.65 Aligned_cols=51 Identities=27% Similarity=0.184 Sum_probs=35.7
Q ss_pred CCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhcccCCCceE
Q 028267 157 KEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVLFIPFDYF 208 (211)
Q Consensus 157 ~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~~~~~~~ 208 (211)
..|+|+|..+......+.-+|+.||||+|||.+.++.+. +|........+|
T Consensus 285 ~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~-~l~~~~~~~gi~ 335 (878)
T PRK09694 285 YQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAW-RLIDQGLADSII 335 (878)
T ss_pred CCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHH-HHHHhCCCCeEE
Confidence 479999998865544556789999999999999765544 444433333333
No 84
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=96.79 E-value=0.0016 Score=65.59 Aligned_cols=42 Identities=26% Similarity=0.169 Sum_probs=35.1
Q ss_pred CCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 157 KEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 157 ~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
..|+++|...--++..|+ |+.++||+|||++|+||++..+..
T Consensus 81 ~~~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~ 122 (896)
T PRK13104 81 LRHFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAIS 122 (896)
T ss_pred CCcchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHhc
Confidence 468999988766666665 789999999999999999988754
No 85
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=96.56 E-value=0.0044 Score=64.12 Aligned_cols=67 Identities=24% Similarity=0.266 Sum_probs=54.1
Q ss_pred hhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcC-CcEEEEcCCCchhHHHhHHHHHHHHhcccC
Q 028267 135 VKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSD-RECFACAPTGSGKTLAFLCPMLMKLRVLFI 203 (211)
Q Consensus 135 ~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G-~dvi~~A~TGsGKTlaf~lPil~~l~~~~~ 203 (211)
+.+..-..+|.+...++. |...+..||....+.++.+ -++++|||||+|||...++.||+.|..+-.
T Consensus 288 Ekl~~iselP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r 355 (1674)
T KOG0951|consen 288 EKLVKISELPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLR 355 (1674)
T ss_pred ceeEeecCCcchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccc
Confidence 334444466667776664 5667999999999999988 689999999999999999999999977644
No 86
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=96.54 E-value=0.0012 Score=66.99 Aligned_cols=49 Identities=39% Similarity=0.558 Sum_probs=43.1
Q ss_pred HHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHH
Q 028267 147 LLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPML 195 (211)
Q Consensus 147 ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil 195 (211)
+.......|+....|.|.++|..++.|+|+++..|||.||.|+|.||.+
T Consensus 253 ~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~ 301 (941)
T KOG0351|consen 253 ELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPAL 301 (941)
T ss_pred HHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccc
Confidence 3334456689999999999999999999999999999999999999865
No 87
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=96.43 E-value=0.0032 Score=63.12 Aligned_cols=43 Identities=33% Similarity=0.299 Sum_probs=36.3
Q ss_pred cCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHH-HHHh
Q 028267 154 LGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPML-MKLR 199 (211)
Q Consensus 154 ~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil-~~l~ 199 (211)
.|. .|+++|..+.-++..|+ |+.+.||+|||++|++|++ ..|.
T Consensus 78 lg~-~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~ 121 (830)
T PRK12904 78 LGM-RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALT 121 (830)
T ss_pred hCC-CCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHc
Confidence 444 78999999887788885 8999999999999999995 6664
No 88
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=96.41 E-value=0.0056 Score=62.56 Aligned_cols=52 Identities=33% Similarity=0.461 Sum_probs=43.4
Q ss_pred HHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhccc
Q 028267 150 NLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVLF 202 (211)
Q Consensus 150 ~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~ 202 (211)
..+..|| .|-++|+.|+-++.+|..|++||+||+|||+.--+.|-..+....
T Consensus 112 ~~~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~q 163 (1041)
T COG4581 112 PAREYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQ 163 (1041)
T ss_pred HHHhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCC
Confidence 3455677 578999999999999999999999999999997777776666543
No 89
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.29 E-value=0.015 Score=52.28 Aligned_cols=52 Identities=29% Similarity=0.408 Sum_probs=37.2
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHhh-HhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 145 SYLLRNLAELGYKEPTPIQRQAIPV-LLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 145 ~~ll~~l~~~g~~~pt~iQ~~aip~-il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
...+..|...|+ +++.|...+-. +..+.+++++++|||||| +|+-.++..+.
T Consensus 121 ~~tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKT-Tll~aL~~~~~ 173 (319)
T PRK13894 121 IFTLDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKT-TLVNAIINEMV 173 (319)
T ss_pred CCCHHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHH-HHHHHHHHhhh
Confidence 344566666676 45667766654 567789999999999999 56666776653
No 90
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=95.99 E-value=0.0097 Score=55.68 Aligned_cols=43 Identities=30% Similarity=0.454 Sum_probs=35.2
Q ss_pred CCCCcHHHHHHHhhHhc----CCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 156 YKEPTPIQRQAIPVLLS----DRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 156 ~~~pt~iQ~~aip~il~----G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
...|.+.|.+|+..+.. ++..+++.|||+|||..++ -++..+.
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~-~~~~~~~ 80 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAA-EAIAELK 80 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHH-HHHHHhc
Confidence 34589999999999988 8999999999999999885 3444443
No 91
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=95.90 E-value=0.015 Score=60.32 Aligned_cols=45 Identities=24% Similarity=0.227 Sum_probs=35.0
Q ss_pred CCCcHHHHHHHhhHh----cC-CcEEEEcCCCchhHHHhHHHHHHHHhccc
Q 028267 157 KEPTPIQRQAIPVLL----SD-RECFACAPTGSGKTLAFLCPMLMKLRVLF 202 (211)
Q Consensus 157 ~~pt~iQ~~aip~il----~G-~dvi~~A~TGsGKTlaf~lPil~~l~~~~ 202 (211)
..|.+.|..||..+. .| +.+|++.+||||||++. +.++.+|....
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~ta-i~li~~L~~~~ 461 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTA-IALMYRLLKAK 461 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHH-HHHHHHHHhcC
Confidence 358999999998765 34 67999999999999984 56667765543
No 92
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=95.85 E-value=0.0069 Score=61.11 Aligned_cols=44 Identities=30% Similarity=0.248 Sum_probs=34.9
Q ss_pred cCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 154 LGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 154 ~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
.|. .|+++|-..--.+..|+ |+.++||+||||+|.+|++.....
T Consensus 79 lgm-~~ydVQliGgl~L~~G~--IaEm~TGEGKTL~a~lp~~l~al~ 122 (908)
T PRK13107 79 FEM-RHFDVQLLGGMVLDSNR--IAEMRTGEGKTLTATLPAYLNALT 122 (908)
T ss_pred hCC-CcCchHHhcchHhcCCc--cccccCCCCchHHHHHHHHHHHhc
Confidence 344 67899987655555665 789999999999999999977654
No 93
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.50 E-value=0.019 Score=51.79 Aligned_cols=57 Identities=23% Similarity=0.290 Sum_probs=42.1
Q ss_pred eccCCCCCCchhhhhhcccCCCCHHHHHHHHH-cCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 122 VSGANVPSPLRTFVKLSSRFGCESYLLRNLAE-LGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 122 v~g~~~p~p~~~f~~l~~~~~l~~~ll~~l~~-~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
..-..+|..+.+|+++ ++|+.+.+.+.. +|. |+|.+||||||+.+.+ .||.++.+
T Consensus 96 ~vlR~Ip~~i~~~e~L----glP~i~~~~~~~~~GL-------------------ILVTGpTGSGKSTTlA-amId~iN~ 151 (353)
T COG2805 96 LVLRLIPSKIPTLEEL----GLPPIVRELAESPRGL-------------------ILVTGPTGSGKSTTLA-AMIDYINK 151 (353)
T ss_pred EEEeccCccCCCHHHc----CCCHHHHHHHhCCCce-------------------EEEeCCCCCcHHHHHH-HHHHHHhc
Confidence 3335678888899988 999988873321 222 8899999999988764 78888776
Q ss_pred cc
Q 028267 201 LF 202 (211)
Q Consensus 201 ~~ 202 (211)
..
T Consensus 152 ~~ 153 (353)
T COG2805 152 HK 153 (353)
T ss_pred cC
Confidence 53
No 94
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=95.07 E-value=0.024 Score=44.72 Aligned_cols=26 Identities=42% Similarity=0.576 Sum_probs=20.7
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHH
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLM 196 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~ 196 (211)
...+.+++.++||||||...+..+..
T Consensus 23 ~~~~~~ll~~~tGsGKT~~~~~~~~~ 48 (184)
T PF04851_consen 23 KEERRVLLNAPTGSGKTIIALALILE 48 (184)
T ss_dssp SGCSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCcChhhhhhhhc
Confidence 34688999999999999998754433
No 95
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.91 E-value=0.099 Score=47.25 Aligned_cols=50 Identities=22% Similarity=0.153 Sum_probs=34.0
Q ss_pred HHHHHHHcCCCCCcHHHHHHHhh-HhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 147 LLRNLAELGYKEPTPIQRQAIPV-LLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 147 ll~~l~~~g~~~pt~iQ~~aip~-il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
.+..+...|. .++.|...|-. +..+.++|++++||||||... -.++..+.
T Consensus 119 tl~~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll-~aL~~~i~ 169 (323)
T PRK13833 119 PLDDYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTLA-NAVIAEIV 169 (323)
T ss_pred CHHHHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHHh
Confidence 3445556665 45667666554 456689999999999999743 45666554
No 96
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.61 E-value=0.13 Score=45.86 Aligned_cols=52 Identities=27% Similarity=0.394 Sum_probs=34.1
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHhh-HhcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 146 YLLRNLAELGYKEPTPIQRQAIPV-LLSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 146 ~ll~~l~~~g~~~pt~iQ~~aip~-il~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
..+..|...|. .++-|...|-. +..+.+++++++||||||-.. -.++..+..
T Consensus 106 ~tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~al~~~i~~ 158 (299)
T TIGR02782 106 FTLDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTLA-NALLAEIAK 158 (299)
T ss_pred CCHHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHhhc
Confidence 34555666665 44555555544 456689999999999999743 456666544
No 97
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=94.39 E-value=0.078 Score=52.76 Aligned_cols=42 Identities=33% Similarity=0.276 Sum_probs=35.7
Q ss_pred CcHHHHHHHhhHhcC---C-cEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 159 PTPIQRQAIPVLLSD---R-ECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 159 pt~iQ~~aip~il~G---~-dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
+.+.|..++-.++.+ . .++..||||+|||.+.+++.+..+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~ 241 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDE 241 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhc
Confidence 477888888877644 4 78899999999999999999998877
No 98
>PF13245 AAA_19: Part of AAA domain
Probab=94.26 E-value=0.11 Score=37.02 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=17.8
Q ss_pred cCCc-EEEEcCCCchhHHHhHHHHHHHH
Q 028267 172 SDRE-CFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 172 ~G~d-vi~~A~TGsGKTlaf~lPil~~l 198 (211)
.+.. +++.+++|||||...+--+...+
T Consensus 8 ~~~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 8 AGSPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred hhCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3444 55699999999976654444444
No 99
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=94.13 E-value=0.14 Score=46.84 Aligned_cols=28 Identities=25% Similarity=0.417 Sum_probs=21.1
Q ss_pred cCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 172 SDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
.+.-++++++||||||-.. -.++..+..
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i~~ 160 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIRELAE 160 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHhh
Confidence 4566999999999999865 456666644
No 100
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=93.96 E-value=0.16 Score=52.08 Aligned_cols=38 Identities=29% Similarity=0.255 Sum_probs=33.0
Q ss_pred HHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHH
Q 028267 151 LAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTL 188 (211)
Q Consensus 151 l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTl 188 (211)
+.+.....|+..|....-.++.|..+-+.||||.|||.
T Consensus 75 F~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTT 112 (1187)
T COG1110 75 FKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTT 112 (1187)
T ss_pred HHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhH
Confidence 44444449999999999999999999999999999997
No 101
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=93.80 E-value=0.2 Score=46.12 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=20.1
Q ss_pred CcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 174 RECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
.-++++++||||||-.. -.++..+..
T Consensus 150 GlilI~G~TGSGKTT~l-~al~~~i~~ 175 (372)
T TIGR02525 150 GLGLICGETGSGKSTLA-ASIYQHCGE 175 (372)
T ss_pred CEEEEECCCCCCHHHHH-HHHHHHHHh
Confidence 35889999999999754 467777654
No 102
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=93.80 E-value=0.26 Score=43.39 Aligned_cols=43 Identities=28% Similarity=0.235 Sum_probs=33.2
Q ss_pred CCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 156 YKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 156 ~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
-..|+++|..++=.+..|+ |+.-.||-|||++-.+|.+-.-..
T Consensus 75 g~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~ 117 (266)
T PF07517_consen 75 GLRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ 117 (266)
T ss_dssp S----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT
T ss_pred CCcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh
Confidence 3479999999998888887 789999999999998887766543
No 103
>PRK10536 hypothetical protein; Provisional
Probab=93.57 E-value=0.19 Score=44.20 Aligned_cols=47 Identities=19% Similarity=0.099 Sum_probs=37.6
Q ss_pred cCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 154 LGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 154 ~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
.++.-.+..|...+-.+....-+++.+++|||||+..+.-.++.|..
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~ 101 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIH 101 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 45666777999999989888889999999999999776666655543
No 104
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=92.69 E-value=0.19 Score=50.53 Aligned_cols=42 Identities=29% Similarity=0.268 Sum_probs=36.4
Q ss_pred CCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 157 KEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 157 ~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
..|+++|..+--++..|+ |+.-.||+|||++..+|++-....
T Consensus 79 ~~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~ 120 (796)
T PRK12906 79 LRPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT 120 (796)
T ss_pred CCCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc
Confidence 478999999877778887 889999999999999998877664
No 105
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=92.54 E-value=0.22 Score=45.53 Aligned_cols=36 Identities=19% Similarity=0.161 Sum_probs=31.1
Q ss_pred cCCCCCcHHHHHHHhhHhcCC-cEEEEcCCCchhHHH
Q 028267 154 LGYKEPTPIQRQAIPVLLSDR-ECFACAPTGSGKTLA 189 (211)
Q Consensus 154 ~g~~~pt~iQ~~aip~il~G~-dvi~~A~TGsGKTla 189 (211)
..|...++-|+..+-.+..++ ++|+++.||||||-.
T Consensus 153 i~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl 189 (355)
T COG4962 153 IIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL 189 (355)
T ss_pred HHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH
Confidence 348889999999998887776 999999999999973
No 106
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=92.36 E-value=0.17 Score=43.68 Aligned_cols=31 Identities=26% Similarity=0.354 Sum_probs=23.2
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHhcc
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLRVL 201 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~ 201 (211)
+..+..++++++||||||-.. -.++..+...
T Consensus 124 v~~~~~ili~G~tGSGKTT~l-~all~~i~~~ 154 (270)
T PF00437_consen 124 VRGRGNILISGPTGSGKTTLL-NALLEEIPPE 154 (270)
T ss_dssp HHTTEEEEEEESTTSSHHHHH-HHHHHHCHTT
T ss_pred cccceEEEEECCCccccchHH-HHHhhhcccc
Confidence 455789999999999999754 5566665543
No 107
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=92.30 E-value=0.2 Score=49.55 Aligned_cols=44 Identities=32% Similarity=0.521 Sum_probs=34.2
Q ss_pred CCcHHHHHHHhhHh----cCCcEEEEcCCCchhHHHhHHHHHHHHhcc
Q 028267 158 EPTPIQRQAIPVLL----SDRECFACAPTGSGKTLAFLCPMLMKLRVL 201 (211)
Q Consensus 158 ~pt~iQ~~aip~il----~G~dvi~~A~TGsGKTlaf~lPil~~l~~~ 201 (211)
.|+.||..-+..++ .|+=-|.-+||||||||+.+...|..|...
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~~ 62 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRDF 62 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHHh
Confidence 46678877665443 577566789999999999999999988654
No 108
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.17 E-value=0.21 Score=49.86 Aligned_cols=41 Identities=20% Similarity=0.382 Sum_probs=31.7
Q ss_pred CCCcHHHHHHHhhHh-cC--CcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 157 KEPTPIQRQAIPVLL-SD--RECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 157 ~~pt~iQ~~aip~il-~G--~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
..|.|.|..|+..++ .| +.-|++.|||+|||+.-+ .++.++
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai-~aa~~l 297 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV-TAACTV 297 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHH-HHHHHh
Confidence 468899999998877 34 367889999999999875 344444
No 109
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=92.17 E-value=0.25 Score=52.16 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=19.4
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHH
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMK 197 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~ 197 (211)
+..+..+|++|.||||||. .||.+..
T Consensus 86 i~~~~VviI~GeTGSGKTT--qlPq~ll 111 (1294)
T PRK11131 86 IRDHQVVIVAGETGSGKTT--QLPKICL 111 (1294)
T ss_pred HHhCCeEEEECCCCCCHHH--HHHHHHH
Confidence 3445567888999999999 6895443
No 110
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=92.07 E-value=0.11 Score=52.22 Aligned_cols=42 Identities=33% Similarity=0.575 Sum_probs=32.8
Q ss_pred CCcHHHHHHHhhHhc----CCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 158 EPTPIQRQAIPVLLS----DRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 158 ~pt~iQ~~aip~il~----G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
.|+|.|...+-.+++ +.+.++-+||||||||+.+...|-..+
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q 66 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQ 66 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHH
Confidence 578888887776654 467889999999999999976665543
No 111
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=91.86 E-value=0.33 Score=48.46 Aligned_cols=44 Identities=30% Similarity=0.201 Sum_probs=37.1
Q ss_pred cCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 154 LGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 154 ~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
.|. .|+++|..+.-.++.|. |+.-.||+|||++..+|++-....
T Consensus 75 lg~-r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~ 118 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQ 118 (764)
T ss_pred cCC-CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHc
Confidence 344 78999999998899885 679999999999999998876543
No 112
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=91.68 E-value=0.26 Score=48.68 Aligned_cols=58 Identities=17% Similarity=0.218 Sum_probs=45.7
Q ss_pred HHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhcccCCCceEE
Q 028267 151 LAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVLFIPFDYFC 209 (211)
Q Consensus 151 l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~~~~~~~~ 209 (211)
+..-|+-.+..-|..|..++|...=-|+++|+|||||.+-. .|+-+|.+.....-++|
T Consensus 403 ~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa-~IVyhl~~~~~~~VLvc 460 (935)
T KOG1802|consen 403 FSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQHAGPVLVC 460 (935)
T ss_pred hcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhH-HHHHHHHHhcCCceEEE
Confidence 34456777788999999999999888899999999999864 56666666665555665
No 113
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.62 E-value=0.48 Score=45.25 Aligned_cols=42 Identities=31% Similarity=0.415 Sum_probs=30.3
Q ss_pred cHHHHHHHhhHhcCCc--EEEEcCCCchhHHHhHHHHHHHHhccc
Q 028267 160 TPIQRQAIPVLLSDRE--CFACAPTGSGKTLAFLCPMLMKLRVLF 202 (211)
Q Consensus 160 t~iQ~~aip~il~G~d--vi~~A~TGsGKTlaf~lPil~~l~~~~ 202 (211)
++.|...+-.++.... +++.+|||||||.+. ..+|+.+....
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTL-Y~~L~~ln~~~ 286 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTTL-YAALSELNTPE 286 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHH-HHHHHHhcCCC
Confidence 5666666666665432 788999999999875 57777776543
No 114
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=91.48 E-value=0.44 Score=46.82 Aligned_cols=43 Identities=23% Similarity=0.350 Sum_probs=32.8
Q ss_pred CCCcHHHHHHHhhHhcC-CcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 157 KEPTPIQRQAIPVLLSD-RECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 157 ~~pt~iQ~~aip~il~G-~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
..+.+.|..|+..++.. ..+++++|+|||||-.- .-++.++..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~-~~ii~~~~~ 199 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTL-VELIRQLVK 199 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHH-HHHHHHHHH
Confidence 35688999999998876 56889999999999654 444545443
No 115
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=91.46 E-value=0.069 Score=49.74 Aligned_cols=23 Identities=43% Similarity=0.762 Sum_probs=20.7
Q ss_pred CcEEEEcCCCchhHHHhHHHHHH
Q 028267 174 RECFACAPTGSGKTLAFLCPMLM 196 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf~lPil~ 196 (211)
.+++++|+||||||.+|++|.|-
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll 67 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLL 67 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHH
Confidence 46999999999999999999774
No 116
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=91.22 E-value=0.29 Score=40.03 Aligned_cols=32 Identities=25% Similarity=0.345 Sum_probs=23.1
Q ss_pred CcHHHHHHHhh-HhcCCcEEEEcCCCchhHHHh
Q 028267 159 PTPIQRQAIPV-LLSDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 159 pt~iQ~~aip~-il~G~dvi~~A~TGsGKTlaf 190 (211)
.++-|...+-. +..|..++++++||||||..+
T Consensus 10 ~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 10 FSPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 34445554443 456889999999999999754
No 117
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=91.05 E-value=0.39 Score=43.47 Aligned_cols=30 Identities=20% Similarity=0.269 Sum_probs=22.3
Q ss_pred hHhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 169 VLLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 169 ~il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
++..+.+++++++||||||-. +-.++..+.
T Consensus 156 ~v~~~~nili~G~tgSGKTTl-l~aL~~~ip 185 (332)
T PRK13900 156 AVISKKNIIISGGTSTGKTTF-TNAALREIP 185 (332)
T ss_pred HHHcCCcEEEECCCCCCHHHH-HHHHHhhCC
Confidence 455789999999999999974 344555543
No 118
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=90.97 E-value=0.38 Score=48.76 Aligned_cols=42 Identities=31% Similarity=0.266 Sum_probs=32.7
Q ss_pred HHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHH
Q 028267 152 AELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLM 196 (211)
Q Consensus 152 ~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~ 196 (211)
+..|. .|+++|..+.-++..| -|+...||.||||++.+|++-
T Consensus 71 R~lG~-r~ydvQlig~l~L~~G--~IaEm~TGEGKTL~a~l~ayl 112 (870)
T CHL00122 71 RTLGL-RHFDVQLIGGLVLNDG--KIAEMKTGEGKTLVATLPAYL 112 (870)
T ss_pred HHhCC-CCCchHhhhhHhhcCC--ccccccCCCCchHHHHHHHHH
Confidence 34455 5899999876555544 678999999999999999853
No 119
>PRK13764 ATPase; Provisional
Probab=90.97 E-value=0.51 Score=46.18 Aligned_cols=27 Identities=15% Similarity=0.220 Sum_probs=21.0
Q ss_pred cCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 172 SDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
.+.+++++++||||||. |+-.++..+.
T Consensus 256 ~~~~ILIsG~TGSGKTT-ll~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKST-FAQALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHHH-HHHHHHHHHh
Confidence 46789999999999997 4456666665
No 120
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=90.61 E-value=0.43 Score=50.39 Aligned_cols=42 Identities=24% Similarity=0.422 Sum_probs=27.8
Q ss_pred cCCCCCcHHHH--HHHhhHh-cCCcEEEEcCCCchhHHHhHHHHHHH
Q 028267 154 LGYKEPTPIQR--QAIPVLL-SDRECFACAPTGSGKTLAFLCPMLMK 197 (211)
Q Consensus 154 ~g~~~pt~iQ~--~aip~il-~G~dvi~~A~TGsGKTlaf~lPil~~ 197 (211)
..|....||.+ ..|...+ ...-+|++|+||||||. .+|.+..
T Consensus 60 ~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~ll 104 (1283)
T TIGR01967 60 IRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTT--QLPKICL 104 (1283)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHH--HHHHHHH
Confidence 44655566655 2333334 44567889999999999 5686654
No 121
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=90.55 E-value=0.51 Score=48.34 Aligned_cols=43 Identities=28% Similarity=0.383 Sum_probs=35.2
Q ss_pred cCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHH--hHHHHHHH
Q 028267 154 LGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLA--FLCPMLMK 197 (211)
Q Consensus 154 ~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTla--f~lPil~~ 197 (211)
.+| .|=..|.+||=++.+|-.|+|.|.|-+|||+. |+|.+.+.
T Consensus 294 ~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~ 338 (1248)
T KOG0947|consen 294 YPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQK 338 (1248)
T ss_pred CCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHh
Confidence 444 46679999999999999999999999999998 55554443
No 122
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=90.37 E-value=0.35 Score=47.72 Aligned_cols=36 Identities=28% Similarity=0.401 Sum_probs=26.2
Q ss_pred CcHHHHHHHhhHh----c------CCcEEEEcCCCchhHHHhHHHH
Q 028267 159 PTPIQRQAIPVLL----S------DRECFACAPTGSGKTLAFLCPM 194 (211)
Q Consensus 159 pt~iQ~~aip~il----~------G~dvi~~A~TGsGKTlaf~lPi 194 (211)
|.+.|..|+..++ . .+..++..+||||||++.+.-+
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la 284 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAA 284 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHH
Confidence 4557888887642 2 2468899999999999875444
No 123
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=90.29 E-value=0.97 Score=45.20 Aligned_cols=42 Identities=29% Similarity=0.335 Sum_probs=33.0
Q ss_pred CCcHHHHHHHhhHhcC----CcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 158 EPTPIQRQAIPVLLSD----RECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 158 ~pt~iQ~~aip~il~G----~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
.+.+-|+.++..+... .-.+..+.||||||-.|+ .+|.....
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl-~~i~~~L~ 243 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYL-EAIAKVLA 243 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHH-HHHHHHHH
Confidence 5677899999888655 678999999999999995 55555444
No 124
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=90.25 E-value=0.64 Score=34.30 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=19.1
Q ss_pred CCcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 173 DRECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
++.+++.+++|+|||. ++--++..+
T Consensus 19 ~~~v~i~G~~G~GKT~-l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTT-LARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHH-HHHHHHHHh
Confidence 6789999999999995 444455544
No 125
>PRK05973 replicative DNA helicase; Provisional
Probab=90.22 E-value=0.8 Score=39.64 Aligned_cols=40 Identities=23% Similarity=0.260 Sum_probs=25.3
Q ss_pred CCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 157 KEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 157 ~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
..+||... .+.-+..|.=+++.|++|+|||. |++-++...
T Consensus 49 ~~~~p~~~-l~GGl~~Gsl~LIaG~PG~GKT~-lalqfa~~~ 88 (237)
T PRK05973 49 AATTPAEE-LFSQLKPGDLVLLGARPGHGKTL-LGLELAVEA 88 (237)
T ss_pred cCCCCHHH-hcCCCCCCCEEEEEeCCCCCHHH-HHHHHHHHH
Confidence 34555332 33345566778999999999998 444444443
No 126
>PRK08181 transposase; Validated
Probab=90.21 E-value=0.4 Score=42.21 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=16.9
Q ss_pred HhcCCcEEEEcCCCchhHHH
Q 028267 170 LLSDRECFACAPTGSGKTLA 189 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTla 189 (211)
+-.+.++++++++|+|||..
T Consensus 103 ~~~~~nlll~Gp~GtGKTHL 122 (269)
T PRK08181 103 LAKGANLLLFGPPGGGKSHL 122 (269)
T ss_pred HhcCceEEEEecCCCcHHHH
Confidence 34678999999999999953
No 127
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=90.15 E-value=0.091 Score=54.88 Aligned_cols=38 Identities=34% Similarity=0.431 Sum_probs=32.9
Q ss_pred CcHHHHHHHhhHhcC-CcEEEEcCCCchhHHHhHHHHHH
Q 028267 159 PTPIQRQAIPVLLSD-RECFACAPTGSGKTLAFLCPMLM 196 (211)
Q Consensus 159 pt~iQ~~aip~il~G-~dvi~~A~TGsGKTlaf~lPil~ 196 (211)
-.|||.+.++.++.. .+++++||+|||||.+..+.++.
T Consensus 1144 ~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~ 1182 (1674)
T KOG0951|consen 1144 FNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR 1182 (1674)
T ss_pred cCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC
Confidence 367999999998876 56999999999999998887776
No 128
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.15 E-value=0.29 Score=44.75 Aligned_cols=27 Identities=44% Similarity=0.550 Sum_probs=19.6
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
|.-.|++..+||||||||-. -.|.++.
T Consensus 95 L~KSNILLiGPTGsGKTlLA--qTLAk~L 121 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLLA--QTLAKIL 121 (408)
T ss_pred eeeccEEEECCCCCcHHHHH--HHHHHHh
Confidence 44568999999999999843 3444443
No 129
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=89.94 E-value=0.52 Score=38.79 Aligned_cols=36 Identities=19% Similarity=0.294 Sum_probs=21.9
Q ss_pred CCcEEEEcCCCchhHHHhHHHHHHHHhc--ccCCCceEE
Q 028267 173 DRECFACAPTGSGKTLAFLCPMLMKLRV--LFIPFDYFC 209 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf~lPil~~l~~--~~~~~~~~~ 209 (211)
..++++.+.||||||.+... ++..+.. .+....+|+
T Consensus 38 ~~h~li~G~tgsGKS~~l~~-ll~~l~~~~~p~~~~l~i 75 (205)
T PF01580_consen 38 NPHLLIAGATGSGKSTLLRT-LLLSLALTYSPDDVQLYI 75 (205)
T ss_dssp S-SEEEE--TTSSHHHHHHH-HHHHHHTT--TTTEEEEE
T ss_pred CceEEEEcCCCCCccHHHHH-HHHHHHHHhcCCccEEEE
Confidence 34899999999999997654 5555544 344455554
No 130
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=89.71 E-value=0.12 Score=51.05 Aligned_cols=25 Identities=28% Similarity=0.561 Sum_probs=22.1
Q ss_pred CcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 174 RECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
.+++++|+||||||.+|+||-|-..
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~ 164 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTF 164 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcC
Confidence 4799999999999999999987653
No 131
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=89.20 E-value=0.23 Score=42.61 Aligned_cols=29 Identities=31% Similarity=0.224 Sum_probs=20.5
Q ss_pred hHhcCCcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 169 VLLSDRECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 169 ~il~G~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
-+..|.-+++.|++|+|||.. ++-++..+
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l-~~~~~~~~ 54 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTF-LREYALDL 54 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHH-HHHHHHHH
Confidence 455677899999999999973 33444443
No 132
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=88.97 E-value=0.4 Score=43.68 Aligned_cols=29 Identities=28% Similarity=0.502 Sum_probs=21.6
Q ss_pred hHhcCCcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 169 VLLSDRECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 169 ~il~G~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
++..+.+++++++||||||... -.++..+
T Consensus 158 ~v~~~~nilI~G~tGSGKTTll-~aLl~~i 186 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTMS-KTLISAI 186 (344)
T ss_pred HHHcCCeEEEECCCCccHHHHH-HHHHccc
Confidence 4567899999999999999743 3444443
No 133
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=88.93 E-value=0.58 Score=47.73 Aligned_cols=59 Identities=22% Similarity=0.220 Sum_probs=46.9
Q ss_pred CCHHHHH-HHHHcCCCCCcHHHHHHH--hhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhcc
Q 028267 143 CESYLLR-NLAELGYKEPTPIQRQAI--PVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVL 201 (211)
Q Consensus 143 l~~~ll~-~l~~~g~~~pt~iQ~~ai--p~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~ 201 (211)
+++.+.. ..+..|+..++..|+.++ |.++.+.++|-.+||+.||||+.-|=++..+...
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~ 268 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR 268 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH
Confidence 4444433 356779999999999987 6789999999999999999999887777766543
No 134
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=88.87 E-value=0.13 Score=50.29 Aligned_cols=25 Identities=40% Similarity=0.675 Sum_probs=22.3
Q ss_pred CcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 174 RECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
.+++++|+||||||..|++|-|-..
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~ 183 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW 183 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC
Confidence 4799999999999999999988763
No 135
>PRK10436 hypothetical protein; Provisional
Probab=88.63 E-value=1.1 Score=42.57 Aligned_cols=46 Identities=35% Similarity=0.476 Sum_probs=28.4
Q ss_pred HHHcCCCCCcHHHHHHHhhHhc--CCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 151 LAELGYKEPTPIQRQAIPVLLS--DRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 151 l~~~g~~~pt~iQ~~aip~il~--G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
|..+|| .+-|...|-.++. +--++++++||||||.+. ..+|..+..
T Consensus 197 L~~LG~---~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~~~ 244 (462)
T PRK10436 197 LETLGM---TPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTLNT 244 (462)
T ss_pred HHHcCc---CHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhhCC
Confidence 344454 3444444444432 234889999999999875 456777643
No 136
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=88.25 E-value=1.4 Score=42.69 Aligned_cols=45 Identities=29% Similarity=0.474 Sum_probs=30.0
Q ss_pred HHHcCCCCCcHHHHHHHhhHhcC--CcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 151 LAELGYKEPTPIQRQAIPVLLSD--RECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 151 l~~~g~~~pt~iQ~~aip~il~G--~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
|...|| .+-|...|-.++.. --++++++||||||-+. ..++..+.
T Consensus 295 l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~~ 341 (564)
T TIGR02538 295 IDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNILN 341 (564)
T ss_pred HHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhhC
Confidence 556665 45555555554432 34789999999999875 45777664
No 137
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=87.94 E-value=0.77 Score=45.57 Aligned_cols=51 Identities=22% Similarity=0.246 Sum_probs=35.4
Q ss_pred CCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhc-ccCCCceEEe
Q 028267 158 EPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRV-LFIPFDYFCE 210 (211)
Q Consensus 158 ~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~-~~~~~~~~~~ 210 (211)
.++|-|..++-.. ...++|.|..|||||.+...=+..-+.. .-.|..++|+
T Consensus 9 ~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~l 60 (721)
T PRK11773 9 SLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAV 60 (721)
T ss_pred hcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEee
Confidence 5899999987542 3568899999999999876555544432 2345666654
No 138
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=87.93 E-value=0.76 Score=46.87 Aligned_cols=43 Identities=30% Similarity=0.277 Sum_probs=33.5
Q ss_pred cCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 154 LGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 154 ~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
.|. .|+++|-..--++..|+ |+...||-||||+..+|++-.-.
T Consensus 82 lG~-r~ydVQliGgl~Lh~G~--IAEM~TGEGKTL~atlpaylnAL 124 (939)
T PRK12902 82 LGM-RHFDVQLIGGMVLHEGQ--IAEMKTGEGKTLVATLPSYLNAL 124 (939)
T ss_pred hCC-CcchhHHHhhhhhcCCc--eeeecCCCChhHHHHHHHHHHhh
Confidence 344 68999988765666664 68999999999999999876543
No 139
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=87.81 E-value=1.6 Score=39.46 Aligned_cols=28 Identities=25% Similarity=0.395 Sum_probs=20.6
Q ss_pred cCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 172 SDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
.+.-++++++||||||... ..++..+..
T Consensus 121 ~~g~ili~G~tGSGKTT~l-~al~~~i~~ 148 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTL-ASMIDYINK 148 (343)
T ss_pred cCcEEEEECCCCCCHHHHH-HHHHHhhCc
Confidence 3556899999999999865 345665543
No 140
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=87.71 E-value=0.86 Score=37.38 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=20.8
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
+-.+.++++.+++|+|||... ..+...+..
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa-~ai~~~~~~ 73 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLA-VAIANEAIR 73 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHH-HHHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHH-HHHHHHhcc
Confidence 446889999999999999864 455555544
No 141
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=87.65 E-value=1 Score=42.53 Aligned_cols=58 Identities=16% Similarity=0.327 Sum_probs=38.5
Q ss_pred hhhhcccCCCCHHHHHHHHHcCCCC--CcH-H---HHHHH-hhHhcCCcEEEEcCCCchhHHHhH
Q 028267 134 FVKLSSRFGCESYLLRNLAELGYKE--PTP-I---QRQAI-PVLLSDRECFACAPTGSGKTLAFL 191 (211)
Q Consensus 134 f~~l~~~~~l~~~ll~~l~~~g~~~--pt~-i---Q~~ai-p~il~G~dvi~~A~TGsGKTlaf~ 191 (211)
|.+...+|-..+++--.|+..||.- .+. . +-..+ |.+-.+.|+|..+|+|||||-.|.
T Consensus 163 ~~~~R~~FT~dEWid~LlrSiG~~P~~~~~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~ 227 (449)
T TIGR02688 163 YKEGRKEFTLEEWIDVLIRSIGYEPEGFEARQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYN 227 (449)
T ss_pred HHHHHhhcCHHHHHHHHHHhcCCCcccCChHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHH
Confidence 3444466667777777778888843 222 1 11222 566788999999999999995554
No 142
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=87.60 E-value=1.3 Score=38.69 Aligned_cols=45 Identities=33% Similarity=0.469 Sum_probs=28.4
Q ss_pred HHHcCCCCCcHHHHHHHhhHhc-C-CcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 151 LAELGYKEPTPIQRQAIPVLLS-D-RECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 151 l~~~g~~~pt~iQ~~aip~il~-G-~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
|...|| ++-|...|-.++. . .-++++++||||||-.. ..++..+.
T Consensus 59 l~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i~ 105 (264)
T cd01129 59 LEKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSELN 105 (264)
T ss_pred HHHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhhC
Confidence 445554 4445555544432 3 35899999999999854 45666664
No 143
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=87.53 E-value=0.13 Score=50.53 Aligned_cols=24 Identities=33% Similarity=0.629 Sum_probs=21.7
Q ss_pred CcEEEEcCCCchhHHHhHHHHHHH
Q 028267 174 RECFACAPTGSGKTLAFLCPMLMK 197 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf~lPil~~ 197 (211)
.+++++|+||||||..|++|-|-.
T Consensus 176 ~HvlviapTgSGKgvg~ViPnLL~ 199 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLVVPTLLS 199 (636)
T ss_pred ceEEEEecCCCCCceEEEccchhh
Confidence 579999999999999999998754
No 144
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=87.43 E-value=0.87 Score=46.48 Aligned_cols=45 Identities=22% Similarity=0.154 Sum_probs=34.6
Q ss_pred HcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 153 ELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 153 ~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
..| ..|+++|-..--.+..|+ |+...||+|||++..+|++-....
T Consensus 78 ~lG-m~~ydVQliGg~~Lh~G~--iaEM~TGEGKTLvA~l~a~l~al~ 122 (913)
T PRK13103 78 VMG-MRHFDVQLIGGMTLHEGK--IAEMRTGEGKTLVGTLAVYLNALS 122 (913)
T ss_pred HhC-CCcchhHHHhhhHhccCc--cccccCCCCChHHHHHHHHHHHHc
Confidence 345 578999988755555554 679999999999999999865543
No 145
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=87.26 E-value=0.4 Score=42.10 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=18.7
Q ss_pred hHhcCCcEEEEcCCCchhHHHh
Q 028267 169 VLLSDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 169 ~il~G~dvi~~A~TGsGKTlaf 190 (211)
.+..++.+++++++|||||..-
T Consensus 29 l~~~~~pvLl~G~~GtGKT~li 50 (272)
T PF12775_consen 29 LLSNGRPVLLVGPSGTGKTSLI 50 (272)
T ss_dssp HHHCTEEEEEESSTTSSHHHHH
T ss_pred HHHcCCcEEEECCCCCchhHHH
Confidence 3557899999999999999843
No 146
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=86.76 E-value=0.23 Score=49.06 Aligned_cols=25 Identities=32% Similarity=0.590 Sum_probs=22.4
Q ss_pred CcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 174 RECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
.++++.|+||||||..|+||-|-..
T Consensus 145 ~hvLviApTrSGKgvg~VIPnLL~~ 169 (663)
T PRK13876 145 EHVLCFAPTRSGKGVGLVVPTLLTW 169 (663)
T ss_pred ceEEEEecCCCCcceeEehhhHHhC
Confidence 5799999999999999999987654
No 147
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=86.68 E-value=0.7 Score=42.74 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=25.6
Q ss_pred HHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhcc
Q 028267 166 AIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVL 201 (211)
Q Consensus 166 aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~ 201 (211)
.||.-+..+++++.|+||||||.. +..++..+...
T Consensus 35 ~~~~~~~~~h~~i~g~tGsGKt~~-i~~l~~~~~~~ 69 (410)
T cd01127 35 PFPKDAEEAHTMIIGTTGTGKTTQ-IRELLASIRAR 69 (410)
T ss_pred eCCcchhhccEEEEcCCCCCHHHH-HHHHHHHHHhc
Confidence 355556678999999999999985 45566665543
No 148
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=86.58 E-value=0.97 Score=41.68 Aligned_cols=43 Identities=23% Similarity=0.242 Sum_probs=33.4
Q ss_pred CCCcHHHHHHHhhHh----cCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 157 KEPTPIQRQAIPVLL----SDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 157 ~~pt~iQ~~aip~il----~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
..+||.|..+-..++ .-.|+|+.|-||+|||-- +++.+++...
T Consensus 96 G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~ 142 (441)
T COG4098 96 GTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALN 142 (441)
T ss_pred cccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHh
Confidence 368999988776554 458999999999999984 3577777655
No 149
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=85.77 E-value=1.1 Score=42.55 Aligned_cols=45 Identities=31% Similarity=0.470 Sum_probs=28.6
Q ss_pred HHHcCCCCCcHHHHHHHhhHhcC-Cc-EEEEcCCCchhHHHhHHHHHHHHh
Q 028267 151 LAELGYKEPTPIQRQAIPVLLSD-RE-CFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 151 l~~~g~~~pt~iQ~~aip~il~G-~d-vi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
|...|| ++-|...|-.++.. .. ++++++||||||... ..+|..+.
T Consensus 221 l~~Lg~---~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l~ 267 (486)
T TIGR02533 221 LETLGM---SPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSRLN 267 (486)
T ss_pred HHHcCC---CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhccC
Confidence 445555 44555555554443 33 789999999999865 34566664
No 150
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=85.62 E-value=1.2 Score=43.45 Aligned_cols=43 Identities=16% Similarity=0.326 Sum_probs=32.5
Q ss_pred CCcHHHHHHHhhHhcCCc-EEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 158 EPTPIQRQAIPVLLSDRE-CFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 158 ~pt~iQ~~aip~il~G~d-vi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
.+-+-|..|+......++ +++++|+|||||.+...=|.+-+++
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~ 228 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ 228 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc
Confidence 345688899988888865 5779999999999886555555554
No 151
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=85.49 E-value=3 Score=43.23 Aligned_cols=44 Identities=18% Similarity=0.159 Sum_probs=33.6
Q ss_pred cCCCCCcHHHHHHHhhHhcCCc-EEEEcCCCchhHHHhHHHHHHHHh
Q 028267 154 LGYKEPTPIQRQAIPVLLSDRE-CFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 154 ~g~~~pt~iQ~~aip~il~G~d-vi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
.|+ .+++-|..|+..++.+.+ +++++..|||||.. +-.++..+.
T Consensus 343 ~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e 387 (988)
T PRK13889 343 RGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWE 387 (988)
T ss_pred cCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHH
Confidence 344 689999999999998765 68899999999975 334444443
No 152
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=85.15 E-value=0.33 Score=47.66 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=20.7
Q ss_pred CcEEEEcCCCchhHHHhHHHHHH
Q 028267 174 RECFACAPTGSGKTLAFLCPMLM 196 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf~lPil~ 196 (211)
.++++.|+||||||..++||-+-
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnLL 234 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTAL 234 (623)
T ss_pred ceEEEEeCCCCCccceeehhhhh
Confidence 58999999999999999999643
No 153
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=84.95 E-value=0.83 Score=40.95 Aligned_cols=34 Identities=26% Similarity=0.338 Sum_probs=25.6
Q ss_pred CCCCcHHHHHH-HhhHhcCCcEEEEcCCCchhHHH
Q 028267 156 YKEPTPIQRQA-IPVLLSDRECFACAPTGSGKTLA 189 (211)
Q Consensus 156 ~~~pt~iQ~~a-ip~il~G~dvi~~A~TGsGKTla 189 (211)
+..+++.|..- |-++-.++++++|++||||||-.
T Consensus 125 ~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~ 159 (312)
T COG0630 125 YGTISPEQAAYLWLAIEARKSIIICGGTASGKTTL 159 (312)
T ss_pred cCCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH
Confidence 34456666554 45567889999999999999974
No 154
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=84.81 E-value=4.1 Score=40.72 Aligned_cols=43 Identities=19% Similarity=0.196 Sum_probs=34.5
Q ss_pred CCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 157 KEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 157 ~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
..+++-|..|+-.++..+-+++.+..|||||... -.++..+..
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~ 364 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEE 364 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHH
Confidence 4689999999999999899999999999999743 344444443
No 155
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=84.47 E-value=1.8 Score=39.24 Aligned_cols=43 Identities=23% Similarity=0.284 Sum_probs=29.7
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHhh-HhcCCcEEEEcCCCchhHHHh
Q 028267 146 YLLRNLAELGYKEPTPIQRQAIPV-LLSDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 146 ~ll~~l~~~g~~~pt~iQ~~aip~-il~G~dvi~~A~TGsGKTlaf 190 (211)
..+..|...|+ .++-+...+-. +..+.+++++++||||||..+
T Consensus 152 ~tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll 195 (340)
T TIGR03819 152 FTLDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTLL 195 (340)
T ss_pred CCHHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHH
Confidence 34666667776 34455555544 445689999999999998744
No 156
>PRK06921 hypothetical protein; Provisional
Probab=84.38 E-value=4.7 Score=35.23 Aligned_cols=29 Identities=21% Similarity=0.119 Sum_probs=21.0
Q ss_pred cCCcEEEEcCCCchhHHHhHHHHHHHHhcc
Q 028267 172 SDRECFACAPTGSGKTLAFLCPMLMKLRVL 201 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf~lPil~~l~~~ 201 (211)
.+..+++.+++|+|||... ..|...+...
T Consensus 116 ~~~~l~l~G~~G~GKThLa-~aia~~l~~~ 144 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLL-TAAANELMRK 144 (266)
T ss_pred CCCeEEEECCCCCcHHHHH-HHHHHHHhhh
Confidence 4678999999999999633 4555555543
No 157
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=84.32 E-value=1.5 Score=36.65 Aligned_cols=26 Identities=31% Similarity=0.340 Sum_probs=21.1
Q ss_pred CCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 173 DRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
++++.+.|.||||||.+- --+++.+.
T Consensus 23 ~~H~~I~G~TGsGKS~~~-~~ll~~l~ 48 (229)
T PF01935_consen 23 NRHIAIFGTTGSGKSNTV-KVLLEELL 48 (229)
T ss_pred cceEEEECCCCCCHHHHH-HHHHHHHH
Confidence 578999999999999865 46667766
No 158
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=84.32 E-value=1.9 Score=41.34 Aligned_cols=44 Identities=25% Similarity=0.203 Sum_probs=32.9
Q ss_pred CcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhcccC
Q 028267 159 PTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVLFI 203 (211)
Q Consensus 159 pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~~ 203 (211)
+...|..-..-++.+ +++++.|||-|||...++-+..+|...++
T Consensus 16 ~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~ 59 (542)
T COG1111 16 PRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGG 59 (542)
T ss_pred HHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCC
Confidence 334454444444444 89999999999999999989888887665
No 159
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=84.12 E-value=1.2 Score=44.86 Aligned_cols=44 Identities=27% Similarity=0.309 Sum_probs=39.2
Q ss_pred CCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhcc
Q 028267 158 EPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVL 201 (211)
Q Consensus 158 ~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~ 201 (211)
.+-|.|..||-++-++..|+|+|-|.+|||...-+.|.+.|...
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~k 172 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREK 172 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhc
Confidence 45689999999999999999999999999999888888887653
No 160
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD. The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Probab=84.05 E-value=1.1 Score=43.49 Aligned_cols=53 Identities=21% Similarity=0.290 Sum_probs=32.1
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHhh---HhcCCcEEEEcCCCchhHHHhHHHHHHHHhcc
Q 028267 146 YLLRNLAELGYKEPTPIQRQAIPV---LLSDRECFACAPTGSGKTLAFLCPMLMKLRVL 201 (211)
Q Consensus 146 ~ll~~l~~~g~~~pt~iQ~~aip~---il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~ 201 (211)
++.+.|+..+= .+++.---+|. -...+++++.|+||||||. ++-.+|..+...
T Consensus 148 ~l~~~l~~~~~--~~~~~igg~pl~~~~~e~~h~li~G~tGsGKs~-~i~~ll~~~~~~ 203 (566)
T TIGR02759 148 ELIKKLKKSRR--ASDIKIGGLPLIKFGSETQHILIHGTTGSGKSV-AIRKLLRWIRQR 203 (566)
T ss_pred HHHHHHHhcCC--CCceeeCCccCCCCcccccceEEEcCCCCCHHH-HHHHHHHHHHhc
Confidence 45555655552 22333233344 3345799999999999996 445567666544
No 161
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=83.86 E-value=1.1 Score=44.66 Aligned_cols=57 Identities=16% Similarity=0.004 Sum_probs=40.4
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhccc
Q 028267 145 SYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVLF 202 (211)
Q Consensus 145 ~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~ 202 (211)
..|.+.|+..|-..+..|--.-||.-+..+++++++-||||||.++ .-+|..+....
T Consensus 157 ~~l~k~lk~~~~~s~i~I~gvPip~~~E~~H~li~GttGSGKS~~i-~~LL~~ir~RG 213 (732)
T PRK13700 157 KDVARMLKKDGKDSDIRIGDLPIIRDSEIQNFCLHGTVGAGKSEVI-RRLANYARQRG 213 (732)
T ss_pred HHHHHHHHhcCCCCCeeEccccCCcchhhcceEEeCCCCCCHHHHH-HHHHHHHHHcC
Confidence 4566777777765555554444444567799999999999999966 57777776543
No 162
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=83.77 E-value=1.7 Score=44.34 Aligned_cols=41 Identities=29% Similarity=0.377 Sum_probs=33.9
Q ss_pred cCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHH
Q 028267 154 LGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMK 197 (211)
Q Consensus 154 ~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~ 197 (211)
.|. .|+++|...--.+..|+ |+.-.||-||||+..+|++-.
T Consensus 75 lG~-r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLn 115 (925)
T PRK12903 75 LGK-RPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLN 115 (925)
T ss_pred hCC-CcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHH
Confidence 355 78999999887777775 689999999999999998643
No 163
>PRK06526 transposase; Provisional
Probab=83.71 E-value=0.71 Score=40.16 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=18.0
Q ss_pred HhcCCcEEEEcCCCchhHHHhH
Q 028267 170 LLSDRECFACAPTGSGKTLAFL 191 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~ 191 (211)
+-.+.++++++|+|+|||....
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~ 116 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAI 116 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHH
Confidence 4467899999999999997543
No 164
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=82.51 E-value=1.1 Score=40.17 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=15.5
Q ss_pred EEEEcCCCchhHHHhHHHHHHH
Q 028267 176 CFACAPTGSGKTLAFLCPMLMK 197 (211)
Q Consensus 176 vi~~A~TGsGKTlaf~lPil~~ 197 (211)
||++++|||||..+.+ .++.+
T Consensus 130 viiVGaTGSGKSTtmA-aMi~y 150 (375)
T COG5008 130 VIIVGATGSGKSTTMA-AMIGY 150 (375)
T ss_pred EEEECCCCCCchhhHH-HHhcc
Confidence 7889999999987653 44443
No 165
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=82.42 E-value=0.48 Score=46.65 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.8
Q ss_pred CcEEEEcCCCchhHHHhHHHHHH
Q 028267 174 RECFACAPTGSGKTLAFLCPMLM 196 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf~lPil~ 196 (211)
.++++.|+||||||..++||-|-
T Consensus 225 ~H~Lv~ApTgsGKt~g~VIPnLL 247 (641)
T PRK13822 225 THGLVFAGSGGFKTTSVVVPTAL 247 (641)
T ss_pred ceEEEEeCCCCCccceEehhhhh
Confidence 57999999999999999999754
No 166
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=81.79 E-value=2.3 Score=42.01 Aligned_cols=57 Identities=32% Similarity=0.417 Sum_probs=44.4
Q ss_pred CCHHHHHH-HHHcCCCCCcHHHHHHHhhHhcC------CcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 143 CESYLLRN-LAELGYKEPTPIQRQAIPVLLSD------RECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 143 l~~~ll~~-l~~~g~~~pt~iQ~~aip~il~G------~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
....++.. +....| .||.-|..+|.-|+.. .+=++++--|||||+..++.++.-+..
T Consensus 247 ~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~ 310 (677)
T COG1200 247 ANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA 310 (677)
T ss_pred ccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc
Confidence 33444554 466677 7999999999988765 345679999999999999999988765
No 167
>PRK08116 hypothetical protein; Validated
Probab=81.62 E-value=5.4 Score=34.82 Aligned_cols=28 Identities=18% Similarity=0.131 Sum_probs=21.4
Q ss_pred CCcEEEEcCCCchhHHHhHHHHHHHHhcc
Q 028267 173 DRECFACAPTGSGKTLAFLCPMLMKLRVL 201 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf~lPil~~l~~~ 201 (211)
+.-+++.+++|+|||... ..|...|...
T Consensus 114 ~~gl~l~G~~GtGKThLa-~aia~~l~~~ 141 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLA-ACIANELIEK 141 (268)
T ss_pred CceEEEECCCCCCHHHHH-HHHHHHHHHc
Confidence 345999999999999754 4677777654
No 168
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=81.42 E-value=5.8 Score=39.76 Aligned_cols=55 Identities=9% Similarity=0.059 Sum_probs=36.9
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHhhHhcC-CcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 143 CESYLLRNLAELGYKEPTPIQRQAIPVLLSD-RECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 143 l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G-~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+++..+...-..+ ..+++-|..|+-.++.+ +=++++++.|||||... -.+++.+.
T Consensus 338 ~~~~~~~~~l~~~-~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll-~~i~~~~~ 393 (744)
T TIGR02768 338 VSPPIVDAAIDQH-YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTML-KAAREAWE 393 (744)
T ss_pred CCHHHHHHHHhcc-CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHH-HHHHHHHH
Confidence 4444444333333 35899999999998875 56789999999998653 23444443
No 169
>PRK11054 helD DNA helicase IV; Provisional
Probab=81.28 E-value=5.1 Score=39.85 Aligned_cols=51 Identities=22% Similarity=0.157 Sum_probs=32.7
Q ss_pred CCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhcc-cCCCceEE
Q 028267 157 KEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVL-FIPFDYFC 209 (211)
Q Consensus 157 ~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~-~~~~~~~~ 209 (211)
..+++-|..|+-. ....+++.|..|||||.+.+-=+..-|... ..|..+++
T Consensus 195 ~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ 246 (684)
T PRK11054 195 SPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILL 246 (684)
T ss_pred CCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEE
Confidence 4688999888643 334688999999999998754443333222 23445544
No 170
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=81.00 E-value=4.2 Score=35.69 Aligned_cols=64 Identities=22% Similarity=0.152 Sum_probs=36.0
Q ss_pred CCCchhhhhhcccCCCCHHHHHHHHHc--CCCCCcHHHHHHHhhH--------------hcCCcEEEEcCCCchhHHHhH
Q 028267 128 PSPLRTFVKLSSRFGCESYLLRNLAEL--GYKEPTPIQRQAIPVL--------------LSDRECFACAPTGSGKTLAFL 191 (211)
Q Consensus 128 p~p~~~f~~l~~~~~l~~~ll~~l~~~--g~~~pt~iQ~~aip~i--------------l~G~dvi~~A~TGsGKTlaf~ 191 (211)
+..+..+.......++++.+.+.|... .+..+..++......+ -.++-++++++||+|||....
T Consensus 133 ~~~l~~l~~~L~~~gv~~~la~~L~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 133 DPEGAKLLERLLRAGVSPELARELLEKLPERADAEDAWRWLREALEKMLPVKPEEDEILEQGGVIALVGPTGVGKTTTLA 212 (282)
T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCccccccCCCeEEEEECCCCCCHHHHHH
Confidence 444445544445568888887776542 2222222222222111 134568899999999997643
No 171
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=80.38 E-value=2 Score=38.20 Aligned_cols=21 Identities=33% Similarity=0.433 Sum_probs=18.1
Q ss_pred HhcCCcEEEEcCCCchhHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf 190 (211)
+..|..++++++||||||...
T Consensus 141 v~~~~~ili~G~tGsGKTTll 161 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFL 161 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHH
Confidence 457899999999999999854
No 172
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=80.32 E-value=3 Score=38.55 Aligned_cols=27 Identities=19% Similarity=0.164 Sum_probs=20.3
Q ss_pred CCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 173 DRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
|.=+|+.|+||+|||. |++-++.++..
T Consensus 195 G~l~vi~g~pg~GKT~-~~l~~a~~~a~ 221 (434)
T TIGR00665 195 SDLIILAARPSMGKTA-FALNIAENAAI 221 (434)
T ss_pred CeEEEEEeCCCCChHH-HHHHHHHHHHH
Confidence 4457889999999995 66777766543
No 173
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=80.26 E-value=2 Score=42.40 Aligned_cols=17 Identities=41% Similarity=0.765 Sum_probs=14.6
Q ss_pred CcEEEEcCCCchhHHHh
Q 028267 174 RECFACAPTGSGKTLAF 190 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf 190 (211)
..|+.|+|+|+||||-.
T Consensus 546 sGvLL~GPPGCGKTLlA 562 (802)
T KOG0733|consen 546 SGVLLCGPPGCGKTLLA 562 (802)
T ss_pred CceEEeCCCCccHHHHH
Confidence 45899999999999953
No 174
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=80.12 E-value=1.5 Score=35.99 Aligned_cols=25 Identities=36% Similarity=0.468 Sum_probs=20.0
Q ss_pred HHHhhHhcCCc--EEEEcCCCchhHHH
Q 028267 165 QAIPVLLSDRE--CFACAPTGSGKTLA 189 (211)
Q Consensus 165 ~aip~il~G~d--vi~~A~TGsGKTla 189 (211)
.++..++.|.| |++.++||||||.+
T Consensus 14 ~~v~~~~~G~n~~i~~yG~tGsGKT~T 40 (186)
T cd01363 14 PLLQSALDGYNVCIFAYGQTGSGKTYT 40 (186)
T ss_pred HHHHHHhCCcceeEEEECCCCCcceEe
Confidence 55667788865 78899999999954
No 175
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=79.96 E-value=8.2 Score=37.98 Aligned_cols=31 Identities=29% Similarity=0.335 Sum_probs=28.1
Q ss_pred cHHHHHHHhhHhcCCcEEEEcCCCchhHHHh
Q 028267 160 TPIQRQAIPVLLSDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 160 t~iQ~~aip~il~G~dvi~~A~TGsGKTlaf 190 (211)
.+.|..|+-..+..+-+|+.+++|||||..-
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v 184 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTV 184 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH
Confidence 5799999999999999999999999999763
No 176
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=79.82 E-value=1.7 Score=42.16 Aligned_cols=42 Identities=29% Similarity=0.373 Sum_probs=31.0
Q ss_pred CCcHHHHHHHhhHhcC-----CcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 158 EPTPIQRQAIPVLLSD-----RECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 158 ~pt~iQ~~aip~il~G-----~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
.|+.=|-+||..+..| +.-+..+.||||||.+-+ -+|.+++.
T Consensus 12 ~PaGDQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT~A-nVI~~~~r 58 (663)
T COG0556 12 KPAGDQPEAIAELVEGIENGLKHQTLLGVTGSGKTFTMA-NVIAKVQR 58 (663)
T ss_pred CCCCCcHHHHHHHHHHHhcCceeeEEeeeccCCchhHHH-HHHHHhCC
Confidence 5777788888776544 567778999999999864 56666654
No 177
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=79.80 E-value=2.8 Score=35.93 Aligned_cols=30 Identities=23% Similarity=0.318 Sum_probs=22.6
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHhcc
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLRVL 201 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~~~ 201 (211)
-.|+-+++.+++|||||. |++-.+......
T Consensus 21 p~g~~~lI~G~pGsGKT~-f~~qfl~~~~~~ 50 (260)
T COG0467 21 PRGSVVLITGPPGTGKTI-FALQFLYEGARE 50 (260)
T ss_pred cCCcEEEEEcCCCCcHHH-HHHHHHHHHHhc
Confidence 348889999999999998 555555555444
No 178
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=79.27 E-value=3.1 Score=37.79 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=17.6
Q ss_pred HhcCCcEEEEcCCCchhHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf 190 (211)
+..++.|++.+++|+|||...
T Consensus 61 l~~~~~ilL~G~pGtGKTtla 81 (327)
T TIGR01650 61 FAYDRRVMVQGYHGTGKSTHI 81 (327)
T ss_pred HhcCCcEEEEeCCCChHHHHH
Confidence 345789999999999999853
No 179
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=79.18 E-value=1.7 Score=40.61 Aligned_cols=66 Identities=23% Similarity=0.290 Sum_probs=36.6
Q ss_pred CCCCCchhhhhhcccCCCCHHHHHHHHHcCCCCCcH----HHHHHHhh------------HhcCCcEEEEcCCCchhHHH
Q 028267 126 NVPSPLRTFVKLSSRFGCESYLLRNLAELGYKEPTP----IQRQAIPV------------LLSDRECFACAPTGSGKTLA 189 (211)
Q Consensus 126 ~~p~p~~~f~~l~~~~~l~~~ll~~l~~~g~~~pt~----iQ~~aip~------------il~G~dvi~~A~TGsGKTla 189 (211)
..+..+..+....-..++++.+...|...--..... ++...... +..|+-+++++|||+|||.+
T Consensus 158 ~~~~~~~~~~~~L~~~gv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~i~~vGptGvGKTTt 237 (424)
T PRK05703 158 RIPPEFAELYKRLKRSGLSPEIAEKLLKLLLEHMPPRERTAWRYLLELLANMIPVRVEDILKQGGVVALVGPTGVGKTTT 237 (424)
T ss_pred cchHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCccccccccCCcEEEEECCCCCCHHHH
Confidence 344445555555566688888877774421111111 22222111 12356789999999999975
Q ss_pred hH
Q 028267 190 FL 191 (211)
Q Consensus 190 f~ 191 (211)
-+
T Consensus 238 ~~ 239 (424)
T PRK05703 238 LA 239 (424)
T ss_pred HH
Confidence 43
No 180
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=79.09 E-value=2.6 Score=36.46 Aligned_cols=27 Identities=11% Similarity=0.079 Sum_probs=19.7
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
..|.=+++.+++|+|||. |++-++...
T Consensus 34 p~gs~~lI~G~pGtGKT~-l~~qf~~~~ 60 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSL-MVEQFAVTQ 60 (259)
T ss_pred ECCcEEEEEcCCCCCHHH-HHHHHHHHH
Confidence 447779999999999998 444444443
No 181
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=78.66 E-value=3 Score=41.08 Aligned_cols=27 Identities=19% Similarity=0.060 Sum_probs=20.4
Q ss_pred CCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 173 DRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
..++++.++||+|||..+ ..++.+...
T Consensus 176 ~~H~lv~G~TGsGKT~l~-~~l~~q~i~ 202 (634)
T TIGR03743 176 VGHTLVLGTTGVGKTRLA-ELLITQDIR 202 (634)
T ss_pred CCcEEEECCCCCCHHHHH-HHHHHHHHH
Confidence 367999999999999776 455555544
No 182
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=78.53 E-value=2 Score=40.47 Aligned_cols=19 Identities=32% Similarity=0.527 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCchhHHHh
Q 028267 172 SDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf 190 (211)
.++.+++.+++|||||+..
T Consensus 216 ~p~gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLA 234 (438)
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3467999999999999864
No 183
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=77.99 E-value=2.2 Score=39.20 Aligned_cols=17 Identities=35% Similarity=0.585 Sum_probs=15.0
Q ss_pred CcEEEEcCCCchhHHHh
Q 028267 174 RECFACAPTGSGKTLAF 190 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf 190 (211)
.++++-++||||||++-
T Consensus 43 ~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 43 SNIIIYGPTGTGKTATV 59 (366)
T ss_pred ccEEEECCCCCCHhHHH
Confidence 47999999999999974
No 184
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=77.98 E-value=1.9 Score=35.96 Aligned_cols=18 Identities=28% Similarity=0.479 Sum_probs=15.0
Q ss_pred cCCcEEEEcCCCchhHHH
Q 028267 172 SDRECFACAPTGSGKTLA 189 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTla 189 (211)
.+..+++++++|||||-.
T Consensus 41 ~~~~~~l~G~~G~GKT~L 58 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHL 58 (227)
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 346799999999999953
No 185
>PRK09183 transposase/IS protein; Provisional
Probab=77.94 E-value=1.8 Score=37.58 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=17.6
Q ss_pred HhcCCcEEEEcCCCchhHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf 190 (211)
+..|.++++.+++|+|||...
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa 119 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLA 119 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHH
Confidence 456889999999999999643
No 186
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=77.76 E-value=2.7 Score=35.62 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=23.2
Q ss_pred CCcHHHHHHHhhHh----cCC-cEEEEcCCCchhHHHhH
Q 028267 158 EPTPIQRQAIPVLL----SDR-ECFACAPTGSGKTLAFL 191 (211)
Q Consensus 158 ~pt~iQ~~aip~il----~G~-dvi~~A~TGsGKTlaf~ 191 (211)
.+++.+..++-.+. .+. -+++.+++|+|||....
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 45666666665542 233 58899999999997653
No 187
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=77.69 E-value=2.4 Score=38.33 Aligned_cols=18 Identities=33% Similarity=0.567 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCchhHHHh
Q 028267 173 DRECFACAPTGSGKTLAF 190 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf 190 (211)
.+.+++.+|+|||||+..
T Consensus 156 p~gvLL~GppGtGKT~la 173 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLA 173 (364)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456999999999999753
No 188
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=77.01 E-value=1.8 Score=38.14 Aligned_cols=19 Identities=21% Similarity=0.155 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCchhHHHh
Q 028267 172 SDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf 190 (211)
.+.+++..+++|||||...
T Consensus 57 ~~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 57 PTLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CCceEEEEcCCCCCHHHHH
Confidence 3668999999999999754
No 189
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=76.85 E-value=4.7 Score=37.70 Aligned_cols=62 Identities=23% Similarity=0.261 Sum_probs=37.7
Q ss_pred CchhhhhhcccCCCCHHHHHHHHHcC--------CCCCcHHHHHHHhhH------------hcCCcEEEEcCCCchhHHH
Q 028267 130 PLRTFVKLSSRFGCESYLLRNLAELG--------YKEPTPIQRQAIPVL------------LSDRECFACAPTGSGKTLA 189 (211)
Q Consensus 130 p~~~f~~l~~~~~l~~~ll~~l~~~g--------~~~pt~iQ~~aip~i------------l~G~dvi~~A~TGsGKTla 189 (211)
|...|.....+-++.+.++..|...- ..++..+.....+.+ ..|+-+++++|+|+|||..
T Consensus 143 ~~~~~~~~L~~~gV~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~L~~~l~~~~~~~~~~~~ii~lvGptGvGKTTt 222 (407)
T PRK12726 143 QNSDFVKFLKGRGISDTYVADFMQAGRKQFKQVETAHLDDITDWFVPYLSGKLAVEDSFDLSNHRIISLIGQTGVGKTTT 222 (407)
T ss_pred ccHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccccHHHHHHHHHHHhcCcEeeCCCceecCCeEEEEECCCCCCHHHH
Confidence 34467666677788888777663321 122233344443322 2356788999999999976
Q ss_pred hH
Q 028267 190 FL 191 (211)
Q Consensus 190 f~ 191 (211)
..
T Consensus 223 ~a 224 (407)
T PRK12726 223 LV 224 (407)
T ss_pred HH
Confidence 54
No 190
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=76.82 E-value=2.1 Score=36.41 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=15.4
Q ss_pred hHhcCCcEEEEcCCCchhHHHh
Q 028267 169 VLLSDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 169 ~il~G~dvi~~A~TGsGKTlaf 190 (211)
++..|+++++.++.|||||...
T Consensus 18 AAaG~h~lLl~GppGtGKTmlA 39 (206)
T PF01078_consen 18 AAAGGHHLLLIGPPGTGKTMLA 39 (206)
T ss_dssp HHHCC--EEEES-CCCTHHHHH
T ss_pred HHcCCCCeEEECCCCCCHHHHH
Confidence 3446789999999999999864
No 191
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=76.79 E-value=1.8 Score=41.25 Aligned_cols=21 Identities=24% Similarity=0.426 Sum_probs=18.0
Q ss_pred HhcCCcEEEEcCCCchhHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf 190 (211)
+..|+++++.+|+|||||+..
T Consensus 195 AAGgHnLl~~GpPGtGKTmla 215 (490)
T COG0606 195 AAGGHNLLLVGPPGTGKTMLA 215 (490)
T ss_pred HhcCCcEEEecCCCCchHHhh
Confidence 346799999999999999864
No 192
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=76.73 E-value=6.3 Score=36.78 Aligned_cols=55 Identities=25% Similarity=0.208 Sum_probs=40.6
Q ss_pred HcCCCCCcHHHHHHHhhHhcCC-c-EEEEcCCCchhHHHhHHHHHHHHhcccCCCce
Q 028267 153 ELGYKEPTPIQRQAIPVLLSDR-E-CFACAPTGSGKTLAFLCPMLMKLRVLFIPFDY 207 (211)
Q Consensus 153 ~~g~~~pt~iQ~~aip~il~G~-d-vi~~A~TGsGKTlaf~lPil~~l~~~~~~~~~ 207 (211)
..|+.--.--|..|+.++++-- + |...+.-|||||+-.+...|++.........+
T Consensus 223 vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~Ki 279 (436)
T COG1875 223 VWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKI 279 (436)
T ss_pred hhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceE
Confidence 4566666678999999888762 3 45567779999999988888887766544443
No 193
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=76.70 E-value=1.6 Score=42.59 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=19.2
Q ss_pred hHhcCCcEEEEcCCCchhHHHh
Q 028267 169 VLLSDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 169 ~il~G~dvi~~A~TGsGKTlaf 190 (211)
.+.+|.++++++++|+|||--|
T Consensus 457 ~V~~g~~LLItG~sG~GKtSLl 478 (659)
T KOG0060|consen 457 EVPSGQNLLITGPSGCGKTSLL 478 (659)
T ss_pred EecCCCeEEEECCCCCchhHHH
Confidence 3567999999999999999855
No 194
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=76.66 E-value=2.9 Score=39.65 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=22.1
Q ss_pred HHHHHhhHhcCCcEEEEcCCCchhHHHh
Q 028267 163 QRQAIPVLLSDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 163 Q~~aip~il~G~dvi~~A~TGsGKTlaf 190 (211)
....+..+..+++++.++++|+|||...
T Consensus 184 le~l~~~L~~~~~iil~GppGtGKT~lA 211 (459)
T PRK11331 184 IETILKRLTIKKNIILQGPPGVGKTFVA 211 (459)
T ss_pred HHHHHHHHhcCCCEEEECCCCCCHHHHH
Confidence 3344556678999999999999999754
No 195
>PRK05748 replicative DNA helicase; Provisional
Probab=76.60 E-value=4.7 Score=37.63 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=20.3
Q ss_pred CCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 173 DRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
|.=+|+.|+||+|||. |++-++.++.
T Consensus 203 G~livIaarpg~GKT~-~al~ia~~~a 228 (448)
T PRK05748 203 NDLIIVAARPSVGKTA-FALNIAQNVA 228 (448)
T ss_pred CceEEEEeCCCCCchH-HHHHHHHHHH
Confidence 4557889999999997 6677777654
No 196
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=76.20 E-value=1.5 Score=41.61 Aligned_cols=19 Identities=47% Similarity=0.688 Sum_probs=16.1
Q ss_pred hcCCcEEEEcCCCchhHHH
Q 028267 171 LSDRECFACAPTGSGKTLA 189 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTla 189 (211)
|.-.|||+.+||||||||.
T Consensus 224 LeKSNvLllGPtGsGKTll 242 (564)
T KOG0745|consen 224 LEKSNVLLLGPTGSGKTLL 242 (564)
T ss_pred eecccEEEECCCCCchhHH
Confidence 4456899999999999984
No 197
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=76.16 E-value=4 Score=34.43 Aligned_cols=32 Identities=22% Similarity=0.210 Sum_probs=22.4
Q ss_pred cEEEEcCCCchhHHHhHHHHHHHHhcccCCCce
Q 028267 175 ECFACAPTGSGKTLAFLCPMLMKLRVLFIPFDY 207 (211)
Q Consensus 175 dvi~~A~TGsGKTlaf~lPil~~l~~~~~~~~~ 207 (211)
-+++.+++|+|||- .+-.+...+........+
T Consensus 36 ~l~l~G~~G~GKTH-LL~Ai~~~~~~~~~~~~v 67 (219)
T PF00308_consen 36 PLFLYGPSGLGKTH-LLQAIANEAQKQHPGKRV 67 (219)
T ss_dssp EEEEEESTTSSHHH-HHHHHHHHHHHHCTTS-E
T ss_pred ceEEECCCCCCHHH-HHHHHHHHHHhccccccc
Confidence 38999999999998 556677776654333333
No 198
>PHA02244 ATPase-like protein
Probab=76.14 E-value=3.9 Score=37.99 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=17.3
Q ss_pred hHhcCCcEEEEcCCCchhHH
Q 028267 169 VLLSDRECFACAPTGSGKTL 188 (211)
Q Consensus 169 ~il~G~dvi~~A~TGsGKTl 188 (211)
.+-.+.+|++.++||+|||.
T Consensus 115 ~l~~~~PVLL~GppGtGKTt 134 (383)
T PHA02244 115 IVNANIPVFLKGGAGSGKNH 134 (383)
T ss_pred HHhcCCCEEEECCCCCCHHH
Confidence 45578899999999999995
No 199
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=76.10 E-value=2.6 Score=39.07 Aligned_cols=19 Identities=32% Similarity=0.559 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCchhHHHh
Q 028267 172 SDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf 190 (211)
.++.+++.+|+|||||+..
T Consensus 178 ~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3578999999999999854
No 200
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=76.04 E-value=7.3 Score=34.10 Aligned_cols=16 Identities=44% Similarity=0.609 Sum_probs=14.0
Q ss_pred cEEEEcCCCchhHHHh
Q 028267 175 ECFACAPTGSGKTLAF 190 (211)
Q Consensus 175 dvi~~A~TGsGKTlaf 190 (211)
.+++.+|+|+|||...
T Consensus 38 ~lll~Gp~GtGKT~la 53 (337)
T PRK12402 38 HLLVQGPPGSGKTAAV 53 (337)
T ss_pred eEEEECCCCCCHHHHH
Confidence 6999999999999753
No 201
>COG4889 Predicted helicase [General function prediction only]
Probab=75.95 E-value=1.1 Score=45.87 Aligned_cols=44 Identities=34% Similarity=0.383 Sum_probs=31.5
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHhhHhcC-----CcEEEEcCCCchhHHH
Q 028267 145 SYLLRNLAELGYKEPTPIQRQAIPVLLSD-----RECFACAPTGSGKTLA 189 (211)
Q Consensus 145 ~~ll~~l~~~g~~~pt~iQ~~aip~il~G-----~dvi~~A~TGsGKTla 189 (211)
..+..+|.-+.=..|.|+|+.||..++.| |.-++-| .|+|||.+
T Consensus 148 ~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMA-cGTGKTfT 196 (1518)
T COG4889 148 TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMA-CGTGKTFT 196 (1518)
T ss_pred cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEe-cCCCccch
Confidence 35566666667789999999999998865 2223233 38999976
No 202
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=75.07 E-value=2.9 Score=37.20 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=18.8
Q ss_pred HhhHhcCCc--EEEEcCCCchhHHHhH
Q 028267 167 IPVLLSDRE--CFACAPTGSGKTLAFL 191 (211)
Q Consensus 167 ip~il~G~d--vi~~A~TGsGKTlaf~ 191 (211)
+..++.|.+ |++.++||||||.+..
T Consensus 67 v~~~l~G~n~~i~ayG~tgSGKT~Tm~ 93 (335)
T PF00225_consen 67 VDSVLDGYNATIFAYGQTGSGKTYTMF 93 (335)
T ss_dssp HHHHHTT-EEEEEEEESTTSSHHHHHT
T ss_pred HHHhhcCCceEEEeecccccccccccc
Confidence 445678875 7888999999997654
No 203
>PRK13531 regulatory ATPase RavA; Provisional
Probab=74.81 E-value=4.9 Score=38.59 Aligned_cols=43 Identities=26% Similarity=0.320 Sum_probs=27.7
Q ss_pred HHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHh
Q 028267 147 LLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 147 ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf 190 (211)
+...|...=+.+-.-|.. ++-+++.|.+|++.+++|+|||+..
T Consensus 14 l~~~l~~~i~gre~vI~l-ll~aalag~hVLL~GpPGTGKT~LA 56 (498)
T PRK13531 14 LSSALEKGLYERSHAIRL-CLLAALSGESVFLLGPPGIAKSLIA 56 (498)
T ss_pred HHHHHhhhccCcHHHHHH-HHHHHccCCCEEEECCCChhHHHHH
Confidence 344444433433333322 3346688999999999999999854
No 204
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=74.78 E-value=6.3 Score=36.38 Aligned_cols=28 Identities=14% Similarity=0.079 Sum_probs=20.6
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
..|.=+++.|+||+|||. |++-+...+-
T Consensus 192 ~~g~liviag~pg~GKT~-~al~ia~~~a 219 (421)
T TIGR03600 192 VKGDLIVIGARPSMGKTT-LALNIAENVA 219 (421)
T ss_pred CCCceEEEEeCCCCCHHH-HHHHHHHHHH
Confidence 345567889999999997 6666665553
No 205
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=74.34 E-value=3.2 Score=36.96 Aligned_cols=25 Identities=28% Similarity=0.382 Sum_probs=18.9
Q ss_pred CcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 174 RECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
..+++.+++|+|||... --++..+.
T Consensus 41 ~~i~I~G~~GtGKT~l~-~~~~~~l~ 65 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT-KYVMKELE 65 (365)
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHHH
Confidence 57999999999999753 44555554
No 206
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=73.99 E-value=4.3 Score=38.34 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCchhH-HHhHHH
Q 028267 173 DRECFACAPTGSGKT-LAFLCP 193 (211)
Q Consensus 173 G~dvi~~A~TGsGKT-laf~lP 193 (211)
.++++..+|||+||| +|-.|+
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LA 71 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLA 71 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 468999999999999 444443
No 207
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=73.78 E-value=3.4 Score=34.10 Aligned_cols=19 Identities=32% Similarity=0.488 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCchhHHHh
Q 028267 172 SDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf 190 (211)
.+..+++.+++|+|||...
T Consensus 37 ~~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLL 55 (226)
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4578999999999999754
No 208
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=73.69 E-value=3.1 Score=28.64 Aligned_cols=19 Identities=26% Similarity=0.459 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCchhHHHh
Q 028267 172 SDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf 190 (211)
.|..+++.+++|||||-.+
T Consensus 22 ~g~~tli~G~nGsGKSTll 40 (62)
T PF13555_consen 22 RGDVTLITGPNGSGKSTLL 40 (62)
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4556999999999999853
No 209
>PRK07952 DNA replication protein DnaC; Validated
Probab=73.67 E-value=7.3 Score=33.74 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=19.4
Q ss_pred CcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 174 RECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
..+++.+++|+|||... ..|...|..
T Consensus 100 ~~~~l~G~~GtGKThLa-~aia~~l~~ 125 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLA-AAICNELLL 125 (244)
T ss_pred ceEEEECCCCCCHHHHH-HHHHHHHHh
Confidence 47999999999999744 455666554
No 210
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=73.61 E-value=2.7 Score=42.79 Aligned_cols=34 Identities=32% Similarity=0.594 Sum_probs=23.9
Q ss_pred CCCCcHHHHHHH--hh----------HhcCCcEEEEcCCCchhHHH
Q 028267 156 YKEPTPIQRQAI--PV----------LLSDRECFACAPTGSGKTLA 189 (211)
Q Consensus 156 ~~~pt~iQ~~ai--p~----------il~G~dvi~~A~TGsGKTla 189 (211)
+.+|..||..-+ |. |...-=+|+|+.||||||.-
T Consensus 242 V~R~~EIQ~sR~~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQ 287 (1172)
T KOG0926|consen 242 VSRPAEIQESRLDLPIVAEEQRIMEAINENPVVIICGETGSGKTTQ 287 (1172)
T ss_pred ecCcHHHHHHHhcCchhHHHHHHHHHhhcCCeEEEecCCCCCcccc
Confidence 467788887654 32 23334488999999999973
No 211
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=73.50 E-value=3.4 Score=38.04 Aligned_cols=16 Identities=38% Similarity=0.700 Sum_probs=14.4
Q ss_pred CcEEEEcCCCchhHHH
Q 028267 174 RECFACAPTGSGKTLA 189 (211)
Q Consensus 174 ~dvi~~A~TGsGKTla 189 (211)
+.+++.+|+|||||+.
T Consensus 166 ~gvLL~GppGtGKT~l 181 (389)
T PRK03992 166 KGVLLYGPPGTGKTLL 181 (389)
T ss_pred CceEEECCCCCChHHH
Confidence 5699999999999985
No 212
>PLN02165 adenylate isopentenyltransferase
Probab=73.50 E-value=2.3 Score=38.76 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=18.7
Q ss_pred cCCcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 172 SDRECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
.|.-+++.++||||||..... +...+
T Consensus 42 ~g~iivIiGPTGSGKStLA~~-LA~~l 67 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVD-LATRF 67 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHH-HHHHc
Confidence 456689999999999986543 44443
No 213
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=73.45 E-value=2.5 Score=39.26 Aligned_cols=28 Identities=25% Similarity=0.396 Sum_probs=21.7
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+.|+-+++.+|+|||||... +.|-+.|-
T Consensus 63 ~aGrgiLi~GppgTGKTAlA-~gIa~eLG 90 (450)
T COG1224 63 MAGRGILIVGPPGTGKTALA-MGIARELG 90 (450)
T ss_pred ccccEEEEECCCCCcHHHHH-HHHHHHhC
Confidence 56899999999999999744 45555554
No 214
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=73.37 E-value=4.5 Score=41.83 Aligned_cols=28 Identities=21% Similarity=0.131 Sum_probs=22.3
Q ss_pred CCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 173 DRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
..++.+..+||||||.+|+--|++-...
T Consensus 59 ~~n~~~~M~TGtGKT~~~~~~i~~l~~~ 86 (986)
T PRK15483 59 KANIDIKMETGTGKTYVYTRLMYELHQK 86 (986)
T ss_pred cceEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 3689999999999999998666555443
No 215
>PRK06835 DNA replication protein DnaC; Validated
Probab=73.36 E-value=6.6 Score=35.55 Aligned_cols=28 Identities=21% Similarity=0.221 Sum_probs=20.6
Q ss_pred cCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 172 SDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
.+..+++.++||+|||.. +..|...+..
T Consensus 182 ~~~~Lll~G~~GtGKThL-a~aIa~~l~~ 209 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFL-SNCIAKELLD 209 (329)
T ss_pred cCCcEEEECCCCCcHHHH-HHHHHHHHHH
Confidence 458899999999999973 3455555543
No 216
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=73.05 E-value=3.8 Score=40.03 Aligned_cols=30 Identities=23% Similarity=0.315 Sum_probs=27.2
Q ss_pred HHHHHHHhhHhcCCcEEEEcCCCchhHHHh
Q 028267 161 PIQRQAIPVLLSDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 161 ~iQ~~aip~il~G~dvi~~A~TGsGKTlaf 190 (211)
..|..|+-.++..+-+++.++.|||||...
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v 177 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTV 177 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHH
Confidence 689999999999999999999999999753
No 217
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=72.73 E-value=6.4 Score=38.29 Aligned_cols=53 Identities=23% Similarity=0.194 Sum_probs=30.8
Q ss_pred ccCCCCHHHHHHHHHcCCC--CCcHHHHHHH------------hhHhcCCcEEEEcCCCchhHHHhH
Q 028267 139 SRFGCESYLLRNLAELGYK--EPTPIQRQAI------------PVLLSDRECFACAPTGSGKTLAFL 191 (211)
Q Consensus 139 ~~~~l~~~ll~~l~~~g~~--~pt~iQ~~ai------------p~il~G~dvi~~A~TGsGKTlaf~ 191 (211)
.+.|+++.+.+.|...=-. .........+ ..+..|.-++++++||+|||....
T Consensus 302 ~~~Gvs~~la~~L~~~l~~~~~~~~~~~~l~~~L~~~l~v~~~~~l~~G~vIaLVGPtGvGKTTtaa 368 (559)
T PRK12727 302 DDYGFDAGLTRDVAMQIPADTELHRGRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIA 368 (559)
T ss_pred HHCCCCHHHHHHHHHhhhcccchhhHHHHHHHHHHHhcCcCccccccCCCEEEEECCCCCCHHHHHH
Confidence 5568888888777442111 1111111111 123356788899999999997653
No 218
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=72.62 E-value=8.3 Score=35.12 Aligned_cols=22 Identities=27% Similarity=0.289 Sum_probs=17.5
Q ss_pred CCcEEEEcCCCchhHHHhHHHH
Q 028267 173 DRECFACAPTGSGKTLAFLCPM 194 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf~lPi 194 (211)
+.+++..+|+|||||-+.++-.
T Consensus 57 lp~~LFyGPpGTGKTStalafa 78 (346)
T KOG0989|consen 57 LPHYLFYGPPGTGKTSTALAFA 78 (346)
T ss_pred CceEEeeCCCCCcHhHHHHHHH
Confidence 4578999999999998765443
No 219
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=72.59 E-value=3.3 Score=35.70 Aligned_cols=30 Identities=27% Similarity=0.296 Sum_probs=23.7
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHhcc
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLRVL 201 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~ 201 (211)
+-.|.-+.+.+|+|||||- +|-+|..|...
T Consensus 28 i~~Ge~vaI~GpSGSGKST--LLniig~ld~p 57 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKST--LLNLLGGLDKP 57 (226)
T ss_pred EcCCCEEEEECCCCCCHHH--HHHHHhcccCC
Confidence 3467779999999999998 56777777654
No 220
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=72.50 E-value=2.6 Score=38.92 Aligned_cols=20 Identities=30% Similarity=0.272 Sum_probs=17.3
Q ss_pred cCCcEEEEcCCCchhHHHhH
Q 028267 172 SDRECFACAPTGSGKTLAFL 191 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf~ 191 (211)
.|.-+++++|||+|||....
T Consensus 136 ~g~ii~lvGptGvGKTTtia 155 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTA 155 (374)
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 36789999999999999765
No 221
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=72.46 E-value=2.6 Score=36.30 Aligned_cols=18 Identities=22% Similarity=0.130 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCchhHHHh
Q 028267 173 DRECFACAPTGSGKTLAF 190 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf 190 (211)
..+++..+|+|||||...
T Consensus 42 ~~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVA 59 (261)
T ss_pred cceEEEEcCCCCCHHHHH
Confidence 357999999999999753
No 222
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=72.17 E-value=2.6 Score=39.22 Aligned_cols=28 Identities=25% Similarity=0.438 Sum_probs=19.2
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+.|+-++..+|+|||||... +.|-+.|-
T Consensus 48 ~aGr~iLiaGppGtGKTAlA-~~ia~eLG 75 (398)
T PF06068_consen 48 IAGRAILIAGPPGTGKTALA-MAIAKELG 75 (398)
T ss_dssp -TT-EEEEEE-TTSSHHHHH-HHHHHHCT
T ss_pred ccCcEEEEeCCCCCCchHHH-HHHHHHhC
Confidence 46899999999999999744 45555554
No 223
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=72.06 E-value=2 Score=33.86 Aligned_cols=28 Identities=29% Similarity=0.345 Sum_probs=16.9
Q ss_pred CCcEEEEcCCCchhHHHhHHHHHHHHhcc
Q 028267 173 DRECFACAPTGSGKTLAFLCPMLMKLRVL 201 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf~lPil~~l~~~ 201 (211)
++.+++.+++|+|||..- --++.++...
T Consensus 24 ~~~~ll~G~~G~GKT~ll-~~~~~~~~~~ 51 (185)
T PF13191_consen 24 PRNLLLTGESGSGKTSLL-RALLDRLAER 51 (185)
T ss_dssp ---EEE-B-TTSSHHHHH-HHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHHHHhc
Confidence 577999999999999753 3466666554
No 224
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=71.86 E-value=3.3 Score=37.30 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=19.4
Q ss_pred HhhHhcCCc--EEEEcCCCchhHHHh
Q 028267 167 IPVLLSDRE--CFACAPTGSGKTLAF 190 (211)
Q Consensus 167 ip~il~G~d--vi~~A~TGsGKTlaf 190 (211)
+..++.|.+ |++.++||||||.+.
T Consensus 80 v~~~~~G~n~~i~ayGqtGSGKTyTm 105 (338)
T cd01370 80 VDGVLNGYNATVFAYGATGAGKTHTM 105 (338)
T ss_pred HHHHHCCCCceEEeeCCCCCCCeEEE
Confidence 345678864 789999999999886
No 225
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=71.64 E-value=3.3 Score=36.91 Aligned_cols=25 Identities=36% Similarity=0.514 Sum_probs=19.8
Q ss_pred HHhhHhcCCc--EEEEcCCCchhHHHh
Q 028267 166 AIPVLLSDRE--CFACAPTGSGKTLAF 190 (211)
Q Consensus 166 aip~il~G~d--vi~~A~TGsGKTlaf 190 (211)
.+..++.|.+ |++.++||||||.+.
T Consensus 68 ~v~~~~~G~n~~i~ayG~tgSGKT~Tm 94 (325)
T cd01369 68 IVDDVLNGYNGTIFAYGQTGSGKTYTM 94 (325)
T ss_pred HHHHHHcCccceEEEeCCCCCCceEEe
Confidence 3455678865 799999999999874
No 226
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=71.52 E-value=5.7 Score=33.79 Aligned_cols=27 Identities=7% Similarity=0.048 Sum_probs=19.5
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
..|.-+++.+++|+|||..- +-++..+
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~-~~~~~~~ 48 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILS-QRLAYGF 48 (230)
T ss_pred CCCcEEEEECCCCCCHHHHH-HHHHHHH
Confidence 44778999999999999853 3334444
No 227
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=71.51 E-value=2.5 Score=41.61 Aligned_cols=60 Identities=8% Similarity=-0.115 Sum_probs=45.9
Q ss_pred HHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhcccCCCc
Q 028267 147 LLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVLFIPFD 206 (211)
Q Consensus 147 ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~~~~~ 206 (211)
+...+..+-...-..||..+|..+-+|+++++...|-+||.++|.+..+.-+...+....
T Consensus 275 ~~~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~ 334 (1034)
T KOG4150|consen 275 IRSLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHATNS 334 (1034)
T ss_pred HHHHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcccce
Confidence 334445555666778999999999999999999999999999887766666555554443
No 228
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=71.51 E-value=2.6 Score=38.16 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=19.1
Q ss_pred HhhHhcCCc--EEEEcCCCchhHHHh
Q 028267 167 IPVLLSDRE--CFACAPTGSGKTLAF 190 (211)
Q Consensus 167 ip~il~G~d--vi~~A~TGsGKTlaf 190 (211)
+..++.|.+ |++.++||||||.+.
T Consensus 81 v~~~l~G~n~~i~ayGqtGSGKT~Tm 106 (356)
T cd01365 81 LDHAFEGYNVCLFAYGQTGSGKSYTM 106 (356)
T ss_pred HHHHhCCCceEEEEecCCCCCCeEEe
Confidence 445678865 888999999999864
No 229
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=71.47 E-value=2.8 Score=37.81 Aligned_cols=24 Identities=42% Similarity=0.522 Sum_probs=18.8
Q ss_pred HhhHhcCCc--EEEEcCCCchhHHHh
Q 028267 167 IPVLLSDRE--CFACAPTGSGKTLAF 190 (211)
Q Consensus 167 ip~il~G~d--vi~~A~TGsGKTlaf 190 (211)
+..++.|.+ |++.++||||||.+.
T Consensus 67 v~~~~~G~n~ti~aYGqTGSGKTyTm 92 (337)
T cd01373 67 VEDCLSGYNGSIFAYGQTGSGKTYTM 92 (337)
T ss_pred HHHHhCCCceeEEEeCCCCCCceEEe
Confidence 445678865 788999999999654
No 230
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=71.32 E-value=3.2 Score=42.02 Aligned_cols=45 Identities=22% Similarity=0.186 Sum_probs=34.0
Q ss_pred CCCcHHHHHHHhhHh----cC-CcEEEEcCCCchhHHHhHHHHHHHHhccc
Q 028267 157 KEPTPIQRQAIPVLL----SD-RECFACAPTGSGKTLAFLCPMLMKLRVLF 202 (211)
Q Consensus 157 ~~pt~iQ~~aip~il----~G-~dvi~~A~TGsGKTlaf~lPil~~l~~~~ 202 (211)
..|...|..||..+. .| +-++++..||||||-+. +.|+.+|.+..
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~~ 213 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKSG 213 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhcc
Confidence 346668999997653 45 34889999999999986 68888887643
No 231
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=71.15 E-value=4.2 Score=36.27 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=19.8
Q ss_pred hhHhcCCcEEEEcCCCchhHHHh
Q 028267 168 PVLLSDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 168 p~il~G~dvi~~A~TGsGKTlaf 190 (211)
-.++.|+.+++.+++|+|||...
T Consensus 38 ~a~~~~~~vll~G~PG~gKT~la 60 (329)
T COG0714 38 LALLAGGHVLLEGPPGVGKTLLA 60 (329)
T ss_pred HHHHcCCCEEEECCCCccHHHHH
Confidence 35678999999999999999843
No 232
>PRK05595 replicative DNA helicase; Provisional
Probab=70.94 E-value=8 Score=36.15 Aligned_cols=24 Identities=21% Similarity=0.131 Sum_probs=17.7
Q ss_pred CcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 174 RECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
.=+|+.|+||.|||. |++-+..++
T Consensus 202 ~liviaarpg~GKT~-~al~ia~~~ 225 (444)
T PRK05595 202 DMILIAARPSMGKTT-FALNIAEYA 225 (444)
T ss_pred cEEEEEecCCCChHH-HHHHHHHHH
Confidence 345679999999997 556666654
No 233
>CHL00181 cbbX CbbX; Provisional
Probab=70.75 E-value=3.4 Score=36.49 Aligned_cols=20 Identities=25% Similarity=0.237 Sum_probs=16.6
Q ss_pred cCCcEEEEcCCCchhHHHhH
Q 028267 172 SDRECFACAPTGSGKTLAFL 191 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf~ 191 (211)
.|.+++..+++|||||....
T Consensus 58 ~~~~ill~G~pGtGKT~lAr 77 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVAL 77 (287)
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 36779999999999998643
No 234
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=70.68 E-value=3.9 Score=36.49 Aligned_cols=25 Identities=44% Similarity=0.709 Sum_probs=20.0
Q ss_pred HHhhHhcCCc--EEEEcCCCchhHHHh
Q 028267 166 AIPVLLSDRE--CFACAPTGSGKTLAF 190 (211)
Q Consensus 166 aip~il~G~d--vi~~A~TGsGKTlaf 190 (211)
.++.++.|.| |++.++||||||.+.
T Consensus 72 lv~~~~~G~n~~i~ayG~tgSGKTyTm 98 (319)
T cd01376 72 IVPHLLSGQNATVFAYGSTGAGKTHTM 98 (319)
T ss_pred HHHHHhCCCceEEEEECCCCCCCcEEE
Confidence 4456788875 788899999999876
No 235
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=70.51 E-value=10 Score=39.85 Aligned_cols=56 Identities=18% Similarity=0.128 Sum_probs=39.1
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHhhHhc-CCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 142 GCESYLLRNLAELGYKEPTPIQRQAIPVLLS-DRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 142 ~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~-G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
++++..+......+ ..+++-|..|+-.+.. ++=+++++.-|||||...- ++++.+.
T Consensus 366 ~v~~~~l~a~~~~~-~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~-~~~~~~e 422 (1102)
T PRK13826 366 GVREAVLAATFARH-ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMK-AAREAWE 422 (1102)
T ss_pred CCCHHHHHHHHhcC-CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHH-HHHHHHH
Confidence 45555555554444 3689999999998764 4568899999999997543 4444443
No 236
>PLN03025 replication factor C subunit; Provisional
Probab=70.44 E-value=3.9 Score=36.29 Aligned_cols=16 Identities=31% Similarity=0.559 Sum_probs=13.7
Q ss_pred CcEEEEcCCCchhHHH
Q 028267 174 RECFACAPTGSGKTLA 189 (211)
Q Consensus 174 ~dvi~~A~TGsGKTla 189 (211)
.+++..+|+|+|||..
T Consensus 35 ~~lll~Gp~G~GKTtl 50 (319)
T PLN03025 35 PNLILSGPPGTGKTTS 50 (319)
T ss_pred ceEEEECCCCCCHHHH
Confidence 4689999999999954
No 237
>PRK08084 DNA replication initiation factor; Provisional
Probab=70.38 E-value=3.4 Score=35.11 Aligned_cols=17 Identities=12% Similarity=0.278 Sum_probs=14.5
Q ss_pred CCcEEEEcCCCchhHHH
Q 028267 173 DRECFACAPTGSGKTLA 189 (211)
Q Consensus 173 G~dvi~~A~TGsGKTla 189 (211)
+..+++++|+|+|||-.
T Consensus 45 ~~~l~l~Gp~G~GKThL 61 (235)
T PRK08084 45 SGYIYLWSREGAGRSHL 61 (235)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 46799999999999953
No 238
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=70.23 E-value=2.9 Score=39.28 Aligned_cols=17 Identities=35% Similarity=0.634 Sum_probs=15.0
Q ss_pred CcEEEEcCCCchhHHHh
Q 028267 174 RECFACAPTGSGKTLAF 190 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf 190 (211)
+.||..+|+|||||+..
T Consensus 246 kgvLm~GPPGTGKTlLA 262 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLA 262 (491)
T ss_pred ceeeeeCCCCCcHHHHH
Confidence 58999999999999853
No 239
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=70.22 E-value=7.5 Score=33.73 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=21.2
Q ss_pred cCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 172 SDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
++.+++..+++|+|||.-. ..|-..|.
T Consensus 104 ~~~nl~l~G~~G~GKThLa-~Ai~~~l~ 130 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLA-IAIGNELL 130 (254)
T ss_pred cCCcEEEECCCCCcHHHHH-HHHHHHHH
Confidence 6789999999999999854 45555555
No 240
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=70.19 E-value=2.7 Score=38.03 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=19.2
Q ss_pred HhhHhcCCc--EEEEcCCCchhHHHh
Q 028267 167 IPVLLSDRE--CFACAPTGSGKTLAF 190 (211)
Q Consensus 167 ip~il~G~d--vi~~A~TGsGKTlaf 190 (211)
+..++.|.+ |++.++||||||.+.
T Consensus 81 v~~~l~G~n~ti~aYGqtGSGKTyTm 106 (345)
T cd01368 81 VQDLLKGKNSLLFTYGVTNSGKTYTM 106 (345)
T ss_pred HHHHhCCCceEEEEeCCCCCCCeEEe
Confidence 445678865 788899999999875
No 241
>PRK08506 replicative DNA helicase; Provisional
Probab=70.03 E-value=7.3 Score=36.90 Aligned_cols=27 Identities=22% Similarity=0.123 Sum_probs=20.0
Q ss_pred CCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 173 DRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
|.=+|+.|+||.|||. |++-++.++..
T Consensus 192 G~LivIaarpg~GKT~-fal~ia~~~~~ 218 (472)
T PRK08506 192 GDLIIIAARPSMGKTT-LCLNMALKALN 218 (472)
T ss_pred CceEEEEcCCCCChHH-HHHHHHHHHHh
Confidence 4457789999999997 66666666643
No 242
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=69.73 E-value=3.7 Score=36.74 Aligned_cols=25 Identities=48% Similarity=0.817 Sum_probs=19.6
Q ss_pred HhhHhcCCc--EEEEcCCCchhHHHhH
Q 028267 167 IPVLLSDRE--CFACAPTGSGKTLAFL 191 (211)
Q Consensus 167 ip~il~G~d--vi~~A~TGsGKTlaf~ 191 (211)
+..++.|.+ |++.++||||||.+..
T Consensus 77 v~~~~~G~n~~i~ayGqtGSGKTyTm~ 103 (322)
T cd01367 77 IPHVFEGGVATCFAYGQTGSGKTYTML 103 (322)
T ss_pred HHHHhCCCceEEEeccCCCCCCceEec
Confidence 445678864 8888999999998764
No 243
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=69.61 E-value=5.3 Score=41.66 Aligned_cols=51 Identities=24% Similarity=0.186 Sum_probs=32.9
Q ss_pred HHHHHHcCCCCCcHHHHHHHhhHhc--------CCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 148 LRNLAELGYKEPTPIQRQAIPVLLS--------DRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 148 l~~l~~~g~~~pt~iQ~~aip~il~--------G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
.+.|...--..-+..|-.|+..+.. |-=+|-.|.||||||++=+ -|+.-|.
T Consensus 398 hk~~~~r~~~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNA-RImyaLs 456 (1110)
T TIGR02562 398 HKYFCQRSAHPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANA-RAMYALR 456 (1110)
T ss_pred hhhhccCCCCCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHH-HHHHHhC
Confidence 3334333334456688888877643 4457788999999999863 4444444
No 244
>PRK12377 putative replication protein; Provisional
Probab=69.48 E-value=11 Score=32.66 Aligned_cols=27 Identities=15% Similarity=0.126 Sum_probs=19.7
Q ss_pred CCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 173 DRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
...+++.+++|+|||-. +..|...+..
T Consensus 101 ~~~l~l~G~~GtGKThL-a~AIa~~l~~ 127 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHL-AAAIGNRLLA 127 (248)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHHHH
Confidence 36799999999999963 3455555554
No 245
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=69.13 E-value=3.1 Score=37.39 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=18.9
Q ss_pred HhhHhcCC--cEEEEcCCCchhHHHh
Q 028267 167 IPVLLSDR--ECFACAPTGSGKTLAF 190 (211)
Q Consensus 167 ip~il~G~--dvi~~A~TGsGKTlaf 190 (211)
+..++.|. .|++.++||||||.+.
T Consensus 73 v~~~~~G~n~~i~ayG~tgSGKTyTm 98 (334)
T cd01375 73 VDSALDGYNGTIFAYGQTGAGKTFTM 98 (334)
T ss_pred HHHHhCCCccceeeecCCCCCCeEEc
Confidence 44567886 4889999999999763
No 246
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=69.03 E-value=11 Score=41.02 Aligned_cols=41 Identities=29% Similarity=0.297 Sum_probs=32.6
Q ss_pred CCcHHHHHHHhhHhcC--CcEEEEcCCCchhHHHh--HHHHHHHH
Q 028267 158 EPTPIQRQAIPVLLSD--RECFACAPTGSGKTLAF--LCPMLMKL 198 (211)
Q Consensus 158 ~pt~iQ~~aip~il~G--~dvi~~A~TGsGKTlaf--~lPil~~l 198 (211)
.+++-|..|+-.++.+ +-+++++..|||||... ++-++..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l 879 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNML 879 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 6899999999999965 67999999999999874 33444443
No 247
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=68.79 E-value=5.9 Score=35.94 Aligned_cols=28 Identities=25% Similarity=0.249 Sum_probs=21.8
Q ss_pred CCcEEEEcCCCchhHHHhHHHHHHHHhcc
Q 028267 173 DRECFACAPTGSGKTLAFLCPMLMKLRVL 201 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf~lPil~~l~~~ 201 (211)
|+=+.+.+++|||||. |++.++...+..
T Consensus 55 G~iteI~Gp~GsGKTt-Lal~~~~~~~~~ 82 (325)
T cd00983 55 GRIIEIYGPESSGKTT-LALHAIAEAQKL 82 (325)
T ss_pred CeEEEEECCCCCCHHH-HHHHHHHHHHHc
Confidence 5668899999999995 667777666654
No 248
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=68.70 E-value=9.3 Score=39.35 Aligned_cols=50 Identities=14% Similarity=0.149 Sum_probs=35.5
Q ss_pred HHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhcccCCCceEEe
Q 028267 161 PIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVLFIPFDYFCE 210 (211)
Q Consensus 161 ~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~~~~~~~~~ 210 (211)
..+..-|..+....-+++++.||||||.----=||+..........++|.
T Consensus 176 ~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicT 225 (924)
T KOG0920|consen 176 KMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICT 225 (924)
T ss_pred HHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEec
Confidence 35555566677778899999999999985444467766555556667764
No 249
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=68.58 E-value=9.2 Score=36.08 Aligned_cols=18 Identities=33% Similarity=0.451 Sum_probs=15.4
Q ss_pred CcEEEEcCCCchhHHHhH
Q 028267 174 RECFACAPTGSGKTLAFL 191 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf~ 191 (211)
+-++++++||+|||....
T Consensus 242 ~vI~LVGptGvGKTTTia 259 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLA 259 (436)
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 578899999999998654
No 250
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=68.50 E-value=9.5 Score=31.13 Aligned_cols=43 Identities=26% Similarity=0.347 Sum_probs=31.1
Q ss_pred HHHHHHHHcCCCC-----CcHHHHHHHhhHhcCCcEEEEcCCCchhHH
Q 028267 146 YLLRNLAELGYKE-----PTPIQRQAIPVLLSDRECFACAPTGSGKTL 188 (211)
Q Consensus 146 ~ll~~l~~~g~~~-----pt~iQ~~aip~il~G~dvi~~A~TGsGKTl 188 (211)
.++..+...||.. -++.....|...+.++-++.++++|.||+-
T Consensus 3 ~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~k~~vl~G~SGvGKSS 50 (161)
T PF03193_consen 3 ELLEQYEKLGYPVFFISAKTGEGIEELKELLKGKTSVLLGQSGVGKSS 50 (161)
T ss_dssp HHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHTTSEEEEECSTTSSHHH
T ss_pred HHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhcCCEEEEECCCCCCHHH
Confidence 4556667777642 234455566677889999999999999986
No 251
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=68.37 E-value=10 Score=36.44 Aligned_cols=44 Identities=18% Similarity=0.244 Sum_probs=33.9
Q ss_pred ccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhcc
Q 028267 139 SRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVL 201 (211)
Q Consensus 139 ~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~ 201 (211)
+.|+|++.|++.|.+. .+.+++.+++|+|||. |+-.+-+.+...
T Consensus 247 edY~L~dkl~eRL~er------------------aeGILIAG~PGaGKsT-FaqAlAefy~~~ 290 (604)
T COG1855 247 EDYGLSDKLKERLEER------------------AEGILIAGAPGAGKST-FAQALAEFYASQ 290 (604)
T ss_pred hhcCCCHHHHHHHHhh------------------hcceEEecCCCCChhH-HHHHHHHHHHhc
Confidence 7789999999988652 4568999999999985 766666665543
No 252
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=68.28 E-value=8.3 Score=34.77 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=19.2
Q ss_pred CcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 174 RECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
.++++.+++|+|||... --++..+..
T Consensus 56 ~~~lI~G~~GtGKT~l~-~~v~~~l~~ 81 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTV-KKVFEELEE 81 (394)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHH
Confidence 67999999999999864 344555443
No 253
>PRK04328 hypothetical protein; Provisional
Probab=68.24 E-value=7.5 Score=33.37 Aligned_cols=18 Identities=17% Similarity=0.337 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCchhHHH
Q 028267 172 SDRECFACAPTGSGKTLA 189 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTla 189 (211)
.|.-+++.+++|+|||.-
T Consensus 22 ~gs~ili~G~pGsGKT~l 39 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIF 39 (249)
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 477899999999999873
No 254
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=67.93 E-value=6.9 Score=32.54 Aligned_cols=27 Identities=22% Similarity=0.226 Sum_probs=18.9
Q ss_pred cCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 172 SDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
.|.=+++.+++|+|||..- +-++..+.
T Consensus 22 ~g~i~~i~G~~GsGKT~l~-~~la~~~~ 48 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNIC-LQLAVEAA 48 (225)
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHHHHH
Confidence 4777899999999998743 33444433
No 255
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=67.85 E-value=3.5 Score=38.47 Aligned_cols=19 Identities=42% Similarity=0.566 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCchhHHHh
Q 028267 172 SDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf 190 (211)
...++++.+|||||||+..
T Consensus 107 ~~~~iLl~Gp~GtGKT~lA 125 (412)
T PRK05342 107 QKSNILLIGPTGSGKTLLA 125 (412)
T ss_pred CCceEEEEcCCCCCHHHHH
Confidence 3567999999999999754
No 256
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=67.84 E-value=11 Score=36.59 Aligned_cols=48 Identities=19% Similarity=0.121 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHH
Q 028267 142 GCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLA 189 (211)
Q Consensus 142 ~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTla 189 (211)
+.++.-...|..+.----+..+..-+..++...-+|+++.||||||.-
T Consensus 31 p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQ 78 (699)
T KOG0925|consen 31 PYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQ 78 (699)
T ss_pred cCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCcccc
Confidence 666666665654332222333344444556677899999999999974
No 257
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=67.60 E-value=4 Score=32.91 Aligned_cols=26 Identities=15% Similarity=0.310 Sum_probs=18.8
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHH
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMK 197 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~ 197 (211)
..|+-+++++++|+|||-.. +-++.+
T Consensus 12 ~~g~gvLi~G~sG~GKStla-l~L~~~ 37 (149)
T cd01918 12 VGGIGVLITGPSGIGKSELA-LELIKR 37 (149)
T ss_pred ECCEEEEEEcCCCCCHHHHH-HHHHHc
Confidence 45788999999999999433 344443
No 258
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=67.59 E-value=7.2 Score=30.02 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=16.8
Q ss_pred hHhcCCcEEEEcCCCchhHHH
Q 028267 169 VLLSDRECFACAPTGSGKTLA 189 (211)
Q Consensus 169 ~il~G~dvi~~A~TGsGKTla 189 (211)
.......|++++.+||||+.+
T Consensus 17 ~a~~~~pvli~GE~GtGK~~~ 37 (138)
T PF14532_consen 17 LAKSSSPVLITGEPGTGKSLL 37 (138)
T ss_dssp HHCSSS-EEEECCTTSSHHHH
T ss_pred HhCCCCcEEEEcCCCCCHHHH
Confidence 345668899999999999985
No 259
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=67.37 E-value=4.1 Score=36.28 Aligned_cols=25 Identities=32% Similarity=0.415 Sum_probs=19.8
Q ss_pred HhhHhcCCc--EEEEcCCCchhHHHhH
Q 028267 167 IPVLLSDRE--CFACAPTGSGKTLAFL 191 (211)
Q Consensus 167 ip~il~G~d--vi~~A~TGsGKTlaf~ 191 (211)
+..++.|.+ |++.++||||||.+..
T Consensus 66 v~~~l~G~n~~i~ayG~tgSGKT~T~~ 92 (321)
T cd01374 66 VRSALEGYNGTIFAYGQTSSGKTFTMS 92 (321)
T ss_pred HHHHHCCCceeEEeecCCCCCCceecc
Confidence 455678864 8889999999998764
No 260
>PRK06749 replicative DNA helicase; Provisional
Probab=66.83 E-value=11 Score=35.24 Aligned_cols=28 Identities=18% Similarity=0.037 Sum_probs=20.7
Q ss_pred CCcEEEEcCCCchhHHHhHHHHHHHHhcc
Q 028267 173 DRECFACAPTGSGKTLAFLCPMLMKLRVL 201 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf~lPil~~l~~~ 201 (211)
|.=+|+.|+||.|||. |++-+..++...
T Consensus 186 G~LiiIaarPgmGKTa-fal~ia~~~a~~ 213 (428)
T PRK06749 186 GDFVVLGARPSMGKTA-FALNVGLHAAKS 213 (428)
T ss_pred CcEEEEEeCCCCCchH-HHHHHHHHHHhc
Confidence 3447779999999997 667777776543
No 261
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=66.57 E-value=6.9 Score=35.40 Aligned_cols=29 Identities=21% Similarity=0.179 Sum_probs=21.5
Q ss_pred cCCcEEEEcCCCchhHHHhHHHHHHHHhcc
Q 028267 172 SDRECFACAPTGSGKTLAFLCPMLMKLRVL 201 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf~lPil~~l~~~ 201 (211)
.|+=+.+.+++|||||. |++.++...+..
T Consensus 54 ~G~iteI~G~~GsGKTt-LaL~~~~~~~~~ 82 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTT-LALHAIAEAQKA 82 (321)
T ss_pred CCeEEEEECCCCCCHHH-HHHHHHHHHHHc
Confidence 35678899999999998 456666665544
No 262
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=66.56 E-value=8.3 Score=36.33 Aligned_cols=27 Identities=22% Similarity=0.208 Sum_probs=19.4
Q ss_pred CcEEEEcCCCchhHHHhHHHHHHHHhcc
Q 028267 174 RECFACAPTGSGKTLAFLCPMLMKLRVL 201 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf~lPil~~l~~~ 201 (211)
..+++.+++|+|||. .+..+...+...
T Consensus 142 npl~i~G~~G~GKTH-Ll~Ai~~~l~~~ 168 (450)
T PRK14087 142 NPLFIYGESGMGKTH-LLKAAKNYIESN 168 (450)
T ss_pred CceEEECCCCCcHHH-HHHHHHHHHHHh
Confidence 358899999999994 335566666543
No 263
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=66.38 E-value=4.4 Score=30.63 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=19.8
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
..|.-+.+++++|||||.-+ -+|..+.
T Consensus 9 ~~g~~~~i~G~nGsGKStLl--~~l~g~~ 35 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLL--KALAGLL 35 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHH--HHHTTSS
T ss_pred cCCCEEEEEccCCCccccce--eeecccc
Confidence 45777899999999999844 4554443
No 264
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=65.99 E-value=6 Score=36.74 Aligned_cols=17 Identities=35% Similarity=0.614 Sum_probs=14.9
Q ss_pred CcEEEEcCCCchhHHHh
Q 028267 174 RECFACAPTGSGKTLAF 190 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf 190 (211)
+.|+.-+|+||||||..
T Consensus 186 KGVLLYGPPGTGKTLLA 202 (406)
T COG1222 186 KGVLLYGPPGTGKTLLA 202 (406)
T ss_pred CceEeeCCCCCcHHHHH
Confidence 56999999999999954
No 265
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=65.96 E-value=5 Score=35.58 Aligned_cols=24 Identities=38% Similarity=0.527 Sum_probs=18.6
Q ss_pred HHhhHhcCCc--EEEEcCCCchhHHH
Q 028267 166 AIPVLLSDRE--CFACAPTGSGKTLA 189 (211)
Q Consensus 166 aip~il~G~d--vi~~A~TGsGKTla 189 (211)
.+..++.|.+ |++.++||||||.+
T Consensus 70 ~v~~~~~G~~~~i~~yG~tgSGKT~t 95 (328)
T cd00106 70 LVESVLEGYNGTIFAYGQTGSGKTYT 95 (328)
T ss_pred HHHHHhCCCceeEEEecCCCCCCeEE
Confidence 3455677865 78899999999965
No 266
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=65.85 E-value=9.7 Score=37.33 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=17.4
Q ss_pred HhcCCcEEEEcCCCchhHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf 190 (211)
+..++++++.+++|+|||...
T Consensus 34 ~~~~~~~ll~G~pG~GKT~la 54 (608)
T TIGR00764 34 AKQKRNVLLIGEPGVGKSMLA 54 (608)
T ss_pred HHcCCCEEEECCCCCCHHHHH
Confidence 446789999999999999743
No 267
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=65.83 E-value=8.3 Score=32.35 Aligned_cols=19 Identities=16% Similarity=0.130 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCchhHHHh
Q 028267 172 SDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf 190 (211)
.|.-+++.+++|+|||.-.
T Consensus 24 ~g~~~~i~G~~GsGKt~l~ 42 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLS 42 (234)
T ss_pred CCcEEEEECCCCCChHHHH
Confidence 4677899999999999744
No 268
>PRK07004 replicative DNA helicase; Provisional
Probab=65.75 E-value=7.9 Score=36.56 Aligned_cols=26 Identities=15% Similarity=0.083 Sum_probs=19.5
Q ss_pred CCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 173 DRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
|.=+|+.|+||+|||. |++-+..++.
T Consensus 213 g~liviaarpg~GKT~-~al~ia~~~a 238 (460)
T PRK07004 213 GELIIVAGRPSMGKTA-FSMNIGEYVA 238 (460)
T ss_pred CceEEEEeCCCCCccH-HHHHHHHHHH
Confidence 4457789999999997 5666666653
No 269
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=65.75 E-value=5.3 Score=35.58 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=19.0
Q ss_pred HHhhHhcCCc--EEEEcCCCchhHHHh
Q 028267 166 AIPVLLSDRE--CFACAPTGSGKTLAF 190 (211)
Q Consensus 166 aip~il~G~d--vi~~A~TGsGKTlaf 190 (211)
.+..++.|.+ |++.++||||||.+.
T Consensus 71 ~v~~~~~G~~~~i~~yG~tgSGKT~tl 97 (335)
T smart00129 71 LVDSVLEGYNATIFAYGQTGSGKTYTM 97 (335)
T ss_pred HHHHHhcCCceeEEEeCCCCCCCceEe
Confidence 3445678865 778999999999665
No 270
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=65.30 E-value=4.2 Score=37.81 Aligned_cols=27 Identities=41% Similarity=0.558 Sum_probs=18.7
Q ss_pred HHHHHHhh---HhcC----CcEEEEcCCCchhHH
Q 028267 162 IQRQAIPV---LLSD----RECFACAPTGSGKTL 188 (211)
Q Consensus 162 iQ~~aip~---il~G----~dvi~~A~TGsGKTl 188 (211)
+|..-+|. +|.| .=.|..+|||||||.
T Consensus 255 ~~WkRFpvLNk~LkGhR~GElTvlTGpTGsGKTT 288 (514)
T KOG2373|consen 255 FQWKRFPVLNKYLKGHRPGELTVLTGPTGSGKTT 288 (514)
T ss_pred eeehhhhHHHHHhccCCCCceEEEecCCCCCcee
Confidence 34555554 3555 347889999999996
No 271
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=65.29 E-value=9.7 Score=37.71 Aligned_cols=41 Identities=27% Similarity=0.379 Sum_probs=31.2
Q ss_pred CCcHHHHHHHhhHhcC-----CcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 158 EPTPIQRQAIPVLLSD-----RECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 158 ~pt~iQ~~aip~il~G-----~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
.|+..|..+|..+..| +..++.+.||||||+..+ -++.++.
T Consensus 9 ~~~~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt~~~a-~~~~~~~ 54 (655)
T TIGR00631 9 QPAGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFTMA-NVIAQVN 54 (655)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEECCCCcHHHHHHH-HHHHHhC
Confidence 6899999999887544 366789999999999765 4555543
No 272
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=65.25 E-value=4.7 Score=37.77 Aligned_cols=20 Identities=50% Similarity=0.637 Sum_probs=16.4
Q ss_pred hcCCcEEEEcCCCchhHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf 190 (211)
+...++++.+|||+|||...
T Consensus 114 ~~~~~iLL~GP~GsGKT~lA 133 (413)
T TIGR00382 114 LSKSNILLIGPTGSGKTLLA 133 (413)
T ss_pred cCCceEEEECCCCcCHHHHH
Confidence 34568999999999999854
No 273
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=64.64 E-value=9.9 Score=37.65 Aligned_cols=27 Identities=19% Similarity=0.075 Sum_probs=20.5
Q ss_pred CCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 173 DRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
..++++.++||+|||..+.+=+.+.+.
T Consensus 180 ~gHtlV~GtTGsGKT~l~~~li~q~i~ 206 (643)
T TIGR03754 180 VGHTLVLGTTRVGKTRLAELLITQDIR 206 (643)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHHHH
Confidence 456889999999999987765545444
No 274
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=64.62 E-value=9.1 Score=36.26 Aligned_cols=27 Identities=26% Similarity=0.425 Sum_probs=19.1
Q ss_pred cCCcEEEEcCCCchhHHHhHHHHH-HHHh
Q 028267 172 SDRECFACAPTGSGKTLAFLCPML-MKLR 199 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf~lPil-~~l~ 199 (211)
.|.-+++.+++|+|||.- ++-++ +.+.
T Consensus 30 ~Gs~~li~G~pGsGKT~l-~~qf~~~~~~ 57 (509)
T PRK09302 30 KGRPTLVSGTAGTGKTLF-ALQFLVNGIK 57 (509)
T ss_pred CCcEEEEEeCCCCCHHHH-HHHHHHHHHH
Confidence 367799999999999984 34433 3443
No 275
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=64.56 E-value=6.2 Score=34.25 Aligned_cols=29 Identities=28% Similarity=0.326 Sum_probs=21.6
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
+-.|.=+++++|+|||||. +|-+|..|-.
T Consensus 25 v~~Gevv~iiGpSGSGKST--lLRclN~LE~ 53 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKST--LLRCLNGLEE 53 (240)
T ss_pred EcCCCEEEEECCCCCCHHH--HHHHHHCCcC
Confidence 3457778999999999987 4566666544
No 276
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=64.48 E-value=10 Score=34.78 Aligned_cols=27 Identities=19% Similarity=0.130 Sum_probs=19.4
Q ss_pred CcEEEEcCCCchhHHHhHHHHHHHHhcc
Q 028267 174 RECFACAPTGSGKTLAFLCPMLMKLRVL 201 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf~lPil~~l~~~ 201 (211)
.-+++.+++|+|||... ..+...+...
T Consensus 137 n~l~l~G~~G~GKThL~-~ai~~~l~~~ 163 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL-HAIGNEILEN 163 (405)
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHHHHh
Confidence 35889999999999744 4555555543
No 277
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=64.47 E-value=4.2 Score=36.42 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=19.3
Q ss_pred HhhHhcCCc--EEEEcCCCchhHHHh
Q 028267 167 IPVLLSDRE--CFACAPTGSGKTLAF 190 (211)
Q Consensus 167 ip~il~G~d--vi~~A~TGsGKTlaf 190 (211)
+..++.|.| |++.++||||||.+.
T Consensus 66 v~~~~~G~n~~i~ayG~tgSGKT~Tm 91 (341)
T cd01372 66 VDGLFEGYNATVLAYGQTGSGKTYTM 91 (341)
T ss_pred HHHHhCCCccceeeecCCCCCCcEEe
Confidence 345678864 889999999999985
No 278
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=64.29 E-value=7.1 Score=38.85 Aligned_cols=16 Identities=38% Similarity=0.694 Sum_probs=14.2
Q ss_pred CcEEEEcCCCchhHHH
Q 028267 174 RECFACAPTGSGKTLA 189 (211)
Q Consensus 174 ~dvi~~A~TGsGKTla 189 (211)
+.++..+|+|||||+.
T Consensus 488 ~giLL~GppGtGKT~l 503 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLL 503 (733)
T ss_pred ceEEEECCCCCCHHHH
Confidence 5689999999999985
No 279
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=64.28 E-value=4.8 Score=36.12 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=18.4
Q ss_pred HhhHhcCCc--EEEEcCCCchhHHH
Q 028267 167 IPVLLSDRE--CFACAPTGSGKTLA 189 (211)
Q Consensus 167 ip~il~G~d--vi~~A~TGsGKTla 189 (211)
+..++.|.+ |++.++||||||.+
T Consensus 74 v~~~~~G~n~~i~ayG~tgSGKTyT 98 (333)
T cd01371 74 VDSVLEGYNGTIFAYGQTGTGKTFT 98 (333)
T ss_pred HHHHhCCCceeEEecCCCCCCCcEe
Confidence 456678865 88899999999955
No 280
>PRK08760 replicative DNA helicase; Provisional
Probab=64.15 E-value=8.9 Score=36.42 Aligned_cols=26 Identities=19% Similarity=0.087 Sum_probs=19.4
Q ss_pred CCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 173 DRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
|.=+|+.|+||+|||. |++-+...+.
T Consensus 229 G~LivIaarPg~GKTa-fal~iA~~~a 254 (476)
T PRK08760 229 TDLIILAARPAMGKTT-FALNIAEYAA 254 (476)
T ss_pred CceEEEEeCCCCChhH-HHHHHHHHHH
Confidence 3447779999999997 6667766654
No 281
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=64.10 E-value=14 Score=35.66 Aligned_cols=39 Identities=23% Similarity=0.145 Sum_probs=21.8
Q ss_pred cCCcEEEEcCCCchhHHHhHHHHHHHHhcccCCCceEEe
Q 028267 172 SDRECFACAPTGSGKTLAFLCPMLMKLRVLFIPFDYFCE 210 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~~~~~~~~~ 210 (211)
.||-.-.++|.|.|||...-.-.-..|.-.+.-.-+||.
T Consensus 289 ~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCE 327 (807)
T KOG0066|consen 289 YGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCE 327 (807)
T ss_pred ecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeee
Confidence 455555678999999974332222222223334556664
No 282
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=64.00 E-value=13 Score=38.12 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=17.3
Q ss_pred CcEEEEcCCCchhHHHhHHHHHHH
Q 028267 174 RECFACAPTGSGKTLAFLCPMLMK 197 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf~lPil~~ 197 (211)
.=+|++++||||||...=.=+++.
T Consensus 66 ~vvii~getGsGKTTqlP~~lle~ 89 (845)
T COG1643 66 QVVIIVGETGSGKTTQLPQFLLEE 89 (845)
T ss_pred CEEEEeCCCCCChHHHHHHHHHhh
Confidence 348999999999999643334443
No 283
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=63.74 E-value=6.5 Score=37.87 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=17.9
Q ss_pred CCcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 173 DRECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
.+.+++.+|+|||||+. +-.+...|
T Consensus 216 p~GILLyGPPGTGKT~L-AKAlA~eL 240 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLI-AKAVANSL 240 (512)
T ss_pred CcceEEECCCCCcHHHH-HHHHHHhh
Confidence 46799999999999984 23344443
No 284
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=63.52 E-value=5.3 Score=41.40 Aligned_cols=41 Identities=29% Similarity=0.289 Sum_probs=30.9
Q ss_pred CCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 157 KEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 157 ~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
-.|+++|-..=-.+..|+ |+-..||-||||+..||++-.-+
T Consensus 137 m~~ydVQLiGgivLh~G~--IAEM~TGEGKTLvatlp~yLnAL 177 (1025)
T PRK12900 137 MVPYDVQLIGGIVLHSGK--ISEMATGEGKTLVSTLPTFLNAL 177 (1025)
T ss_pred ccccchHHhhhHHhhcCC--ccccCCCCCcchHhHHHHHHHHH
Confidence 357788877655566664 57899999999999999865433
No 285
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=63.49 E-value=6.7 Score=31.44 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=19.8
Q ss_pred cCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 172 SDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
.|.=+++.|++|+|||.. ++-++-.+.
T Consensus 31 ~g~l~~i~g~~g~GKT~~-~~~l~~~~~ 57 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTL-ALQLAAALA 57 (193)
T ss_dssp TTSEEEEEECSTSSHHHH-HHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHH-HHHHHHHHH
Confidence 566688999999999984 455555544
No 286
>COG3451 VirB4 Type IV secretory pathway, VirB4 components [Intracellular trafficking and secretion]
Probab=62.88 E-value=8.7 Score=38.95 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=18.1
Q ss_pred CcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 174 RECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
.+.+++++||+|||.-. -.++.+..+
T Consensus 437 ghT~I~G~tGaGKTvLl-~~llaq~~k 462 (796)
T COG3451 437 GHTLIIGPTGAGKTVLL-SFLLAQALK 462 (796)
T ss_pred CCeEEECCCCCCHHHHH-HHHHHHHHH
Confidence 47899999999999743 344444433
No 287
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=62.51 E-value=6.9 Score=36.10 Aligned_cols=36 Identities=25% Similarity=0.245 Sum_probs=25.1
Q ss_pred CCcEEEEcCCCchhHHHhHHHHHHHHhcccCCCceEE
Q 028267 173 DRECFACAPTGSGKTLAFLCPMLMKLRVLFIPFDYFC 209 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf~lPil~~l~~~~~~~~~~~ 209 (211)
.|=+++.+|+|||||- .+=.+.++|.-+-...-.||
T Consensus 177 NRliLlhGPPGTGKTS-LCKaLaQkLSIR~~~~y~~~ 212 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTS-LCKALAQKLSIRTNDRYYKG 212 (423)
T ss_pred eeEEEEeCCCCCChhH-HHHHHHHhheeeecCccccc
Confidence 4568899999999996 45567777765544444444
No 288
>PRK08727 hypothetical protein; Validated
Probab=62.46 E-value=4.6 Score=34.30 Aligned_cols=14 Identities=36% Similarity=0.605 Sum_probs=12.7
Q ss_pred cEEEEcCCCchhHH
Q 028267 175 ECFACAPTGSGKTL 188 (211)
Q Consensus 175 dvi~~A~TGsGKTl 188 (211)
-+++.+++|+|||-
T Consensus 43 ~l~l~G~~G~GKTh 56 (233)
T PRK08727 43 WLYLSGPAGTGKTH 56 (233)
T ss_pred eEEEECCCCCCHHH
Confidence 49999999999995
No 289
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=62.41 E-value=12 Score=33.98 Aligned_cols=17 Identities=18% Similarity=0.349 Sum_probs=14.9
Q ss_pred cC-CcEEEEcCCCchhHH
Q 028267 172 SD-RECFACAPTGSGKTL 188 (211)
Q Consensus 172 ~G-~dvi~~A~TGsGKTl 188 (211)
.| .++++.+++|+|||.
T Consensus 27 ~~~~~vLl~G~pG~gKT~ 44 (334)
T PRK13407 27 PGIGGVLVFGDRGTGKST 44 (334)
T ss_pred cCCCcEEEEcCCCCCHHH
Confidence 55 689999999999994
No 290
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=62.14 E-value=4.8 Score=36.29 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=18.5
Q ss_pred HhhHhcCCc--EEEEcCCCchhHHHh
Q 028267 167 IPVLLSDRE--CFACAPTGSGKTLAF 190 (211)
Q Consensus 167 ip~il~G~d--vi~~A~TGsGKTlaf 190 (211)
+..++.|.+ |++.++||||||.+.
T Consensus 74 v~~~~~G~n~~i~ayG~tgSGKTyTl 99 (352)
T cd01364 74 LDEVLMGYNCTIFAYGQTGTGKTYTM 99 (352)
T ss_pred HHHHhCCCeEEEEECCCCCCCCcEEe
Confidence 345678875 778899999999654
No 291
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=62.14 E-value=8.4 Score=36.15 Aligned_cols=31 Identities=16% Similarity=0.208 Sum_probs=22.2
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHhcc
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLRVL 201 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~ 201 (211)
+-.|.-+++++++|+|||... .-+...+...
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~-~~i~~~I~~n 195 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLL-QKIAQAITRN 195 (415)
T ss_pred eCCCCEEEEECCCCCChhHHH-HHHHHhhccc
Confidence 346788999999999999743 3355555544
No 292
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=62.03 E-value=8 Score=37.14 Aligned_cols=32 Identities=28% Similarity=0.419 Sum_probs=23.6
Q ss_pred cHHHHHHHhhH-------hcCCcEEEEcCCCchhHHHhH
Q 028267 160 TPIQRQAIPVL-------LSDRECFACAPTGSGKTLAFL 191 (211)
Q Consensus 160 t~iQ~~aip~i-------l~G~dvi~~A~TGsGKTlaf~ 191 (211)
++||..-..++ -.|.=+.+|+++|||||--.-
T Consensus 12 r~Ie~~l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 12 RKIQTDLERILVKFNKELPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred hHHHHHHHHHHhCCceeecCCCEEEEECCCCCCHHHHHh
Confidence 56777655444 357789999999999998544
No 293
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=61.97 E-value=21 Score=39.32 Aligned_cols=34 Identities=32% Similarity=0.327 Sum_probs=29.6
Q ss_pred CCCcHHHHHHHhhHhcC--CcEEEEcCCCchhHHHh
Q 028267 157 KEPTPIQRQAIPVLLSD--RECFACAPTGSGKTLAF 190 (211)
Q Consensus 157 ~~pt~iQ~~aip~il~G--~dvi~~A~TGsGKTlaf 190 (211)
..+++.|..|+-.++.+ +-+++++..|||||...
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l 1001 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF 1001 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH
Confidence 36899999999999986 56899999999999764
No 294
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=61.85 E-value=7.6 Score=36.75 Aligned_cols=16 Identities=38% Similarity=0.711 Sum_probs=14.4
Q ss_pred CcEEEEcCCCchhHHH
Q 028267 174 RECFACAPTGSGKTLA 189 (211)
Q Consensus 174 ~dvi~~A~TGsGKTla 189 (211)
+.+++.+|+|||||+.
T Consensus 89 ~giLL~GppGtGKT~l 104 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLL 104 (495)
T ss_pred CcEEEECCCCCCHHHH
Confidence 5699999999999985
No 295
>PRK08840 replicative DNA helicase; Provisional
Probab=61.85 E-value=16 Score=34.58 Aligned_cols=27 Identities=19% Similarity=0.153 Sum_probs=19.2
Q ss_pred cCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 172 SDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
.|.=+|+.|+||.|||. |++-+..++.
T Consensus 216 ~g~LiviaarPg~GKTa-falnia~~~a 242 (464)
T PRK08840 216 GSDLIIVAARPSMGKTT-FAMNLCENAA 242 (464)
T ss_pred CCceEEEEeCCCCchHH-HHHHHHHHHH
Confidence 34456779999999997 5566665553
No 296
>PRK06893 DNA replication initiation factor; Validated
Probab=61.35 E-value=4.9 Score=33.98 Aligned_cols=15 Identities=20% Similarity=0.195 Sum_probs=12.9
Q ss_pred CcEEEEcCCCchhHH
Q 028267 174 RECFACAPTGSGKTL 188 (211)
Q Consensus 174 ~dvi~~A~TGsGKTl 188 (211)
.-+++.+++|+|||-
T Consensus 40 ~~l~l~G~~G~GKTh 54 (229)
T PRK06893 40 PFFYIWGGKSSGKSH 54 (229)
T ss_pred CeEEEECCCCCCHHH
Confidence 347899999999995
No 297
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=61.13 E-value=11 Score=35.67 Aligned_cols=17 Identities=35% Similarity=0.497 Sum_probs=15.0
Q ss_pred CcEEEEcCCCchhHHHh
Q 028267 174 RECFACAPTGSGKTLAF 190 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf 190 (211)
+++++.+|||+|||...
T Consensus 48 ~~ILLiGppG~GKT~lA 64 (441)
T TIGR00390 48 KNILMIGPTGVGKTEIA 64 (441)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 68999999999999753
No 298
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=61.11 E-value=13 Score=34.59 Aligned_cols=19 Identities=37% Similarity=0.525 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCchhHHHhH
Q 028267 173 DRECFACAPTGSGKTLAFL 191 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf~ 191 (211)
++-++.+++||+|||.+..
T Consensus 174 ~~vi~lvGptGvGKTTT~a 192 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIA 192 (388)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4578999999999998754
No 299
>PRK12608 transcription termination factor Rho; Provisional
Probab=60.90 E-value=17 Score=33.84 Aligned_cols=40 Identities=13% Similarity=0.246 Sum_probs=27.9
Q ss_pred HHHHHHHhhHh---cCCcEEEEcCCCchhHHHhHHHHHHHHhcc
Q 028267 161 PIQRQAIPVLL---SDRECFACAPTGSGKTLAFLCPMLMKLRVL 201 (211)
Q Consensus 161 ~iQ~~aip~il---~G~dvi~~A~TGsGKTlaf~lPil~~l~~~ 201 (211)
++-..+|..++ .|..+++.|+.|+|||... .-++..+...
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl-~~la~~i~~~ 160 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLL-QQIAAAVAAN 160 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHHH-HHHHHHHHhc
Confidence 45555666554 6788999999999999854 3355666543
No 300
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=60.84 E-value=9.2 Score=35.90 Aligned_cols=30 Identities=20% Similarity=0.253 Sum_probs=21.7
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHhcc
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLRVL 201 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~~~ 201 (211)
-.|.-.++.|+.|+|||. .+--|...+...
T Consensus 167 GkGQR~lIvgppGvGKTT-LaK~Ian~I~~n 196 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTV-LLQNIANSITTN 196 (416)
T ss_pred ccCceEEEeCCCCCChhH-HHHHHHHHHHhh
Confidence 357678889999999995 444566666554
No 301
>PRK06620 hypothetical protein; Validated
Probab=60.80 E-value=5.1 Score=33.75 Aligned_cols=18 Identities=28% Similarity=0.235 Sum_probs=14.7
Q ss_pred CcEEEEcCCCchhHHHhH
Q 028267 174 RECFACAPTGSGKTLAFL 191 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf~ 191 (211)
.-+++.+++|||||-...
T Consensus 45 ~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 348999999999997543
No 302
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=60.62 E-value=8.4 Score=34.42 Aligned_cols=31 Identities=26% Similarity=0.258 Sum_probs=24.2
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHhccc
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLRVLF 202 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~ 202 (211)
+-.|.=++..+++|||||.+ |-+|.+|.+..
T Consensus 24 I~~gef~vliGpSGsGKTTt--LkMINrLiept 54 (309)
T COG1125 24 IEEGEFLVLIGPSGSGKTTT--LKMINRLIEPT 54 (309)
T ss_pred ecCCeEEEEECCCCCcHHHH--HHHHhcccCCC
Confidence 34577789999999999984 57888887643
No 303
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=60.60 E-value=5.2 Score=40.33 Aligned_cols=17 Identities=35% Similarity=0.624 Sum_probs=15.1
Q ss_pred CcEEEEcCCCchhHHHh
Q 028267 174 RECFACAPTGSGKTLAF 190 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf 190 (211)
+-+|+++|+||||||..
T Consensus 345 kGvLL~GPPGTGKTLLA 361 (774)
T KOG0731|consen 345 KGVLLVGPPGTGKTLLA 361 (774)
T ss_pred CceEEECCCCCcHHHHH
Confidence 57999999999999964
No 304
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=60.55 E-value=6.9 Score=34.87 Aligned_cols=25 Identities=36% Similarity=0.496 Sum_probs=20.0
Q ss_pred HHhhHhcCCc--EEEEcCCCchhHHHh
Q 028267 166 AIPVLLSDRE--CFACAPTGSGKTLAF 190 (211)
Q Consensus 166 aip~il~G~d--vi~~A~TGsGKTlaf 190 (211)
.+..++.|.+ |++.++||||||.+.
T Consensus 69 ~v~~~~~G~~~~i~ayG~tgSGKT~tl 95 (329)
T cd01366 69 LVQSALDGYNVCIFAYGQTGSGKTYTM 95 (329)
T ss_pred HHHHHhCCCceEEEEeCCCCCCCcEEe
Confidence 4556678865 788999999999876
No 305
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=60.48 E-value=8 Score=32.26 Aligned_cols=29 Identities=17% Similarity=0.132 Sum_probs=21.4
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
+..|.-+.+.+++|||||. ++-+|..+..
T Consensus 28 i~~Ge~~~l~G~nGsGKST--Ll~~l~G~~~ 56 (233)
T cd03258 28 VPKGEIFGIIGRSGAGKST--LIRCINGLER 56 (233)
T ss_pred EcCCCEEEEECCCCCCHHH--HHHHHhCCCC
Confidence 3468889999999999997 3445555543
No 306
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=60.37 E-value=7.9 Score=37.68 Aligned_cols=20 Identities=45% Similarity=0.589 Sum_probs=16.6
Q ss_pred HhcCC--cEEEEcCCCchhHHH
Q 028267 170 LLSDR--ECFACAPTGSGKTLA 189 (211)
Q Consensus 170 il~G~--dvi~~A~TGsGKTla 189 (211)
+|.|. .|+++++||||||-+
T Consensus 78 VL~GYNGTvfaYGqT~sGKTyt 99 (607)
T KOG0240|consen 78 VLLGYNGTVFAYGQTGSGKTYT 99 (607)
T ss_pred HhcccceeEEEecCCCCCccee
Confidence 46776 489999999999975
No 307
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=60.36 E-value=13 Score=34.73 Aligned_cols=27 Identities=19% Similarity=0.101 Sum_probs=19.2
Q ss_pred CcEEEEcCCCchhHHHhHHHHHHHHhcc
Q 028267 174 RECFACAPTGSGKTLAFLCPMLMKLRVL 201 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf~lPil~~l~~~ 201 (211)
..+++.+++|+|||... ..+...+...
T Consensus 149 ~~l~l~G~~G~GKThL~-~ai~~~~~~~ 175 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLL-HAIGNYILEK 175 (450)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHh
Confidence 45899999999999743 3455555443
No 308
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=60.29 E-value=13 Score=34.90 Aligned_cols=26 Identities=19% Similarity=0.072 Sum_probs=19.1
Q ss_pred cEEEEcCCCchhHHHhHHHHHHHHhcc
Q 028267 175 ECFACAPTGSGKTLAFLCPMLMKLRVL 201 (211)
Q Consensus 175 dvi~~A~TGsGKTlaf~lPil~~l~~~ 201 (211)
.+++.+++|+|||... ..+...+...
T Consensus 132 ~l~lyG~~G~GKTHLl-~ai~~~l~~~ 157 (440)
T PRK14088 132 PLFIYGGVGLGKTHLL-QSIGNYVVQN 157 (440)
T ss_pred eEEEEcCCCCcHHHHH-HHHHHHHHHh
Confidence 5899999999999743 4555655543
No 309
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=60.16 E-value=2.3 Score=44.15 Aligned_cols=51 Identities=29% Similarity=0.258 Sum_probs=39.2
Q ss_pred CCcHHHHHHHhhHhc-CCcEEEEcCCCchhHHHhHHHHHHHHhcccCCCceE
Q 028267 158 EPTPIQRQAIPVLLS-DRECFACAPTGSGKTLAFLCPMLMKLRVLFIPFDYF 208 (211)
Q Consensus 158 ~pt~iQ~~aip~il~-G~dvi~~A~TGsGKTlaf~lPil~~l~~~~~~~~~~ 208 (211)
.--|+|.+.+-.++. ..++++-+|||+|||++|-+.+..-++..|....+|
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvy 978 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVY 978 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEE
Confidence 445577776655543 357888999999999999999999999888755554
No 310
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=59.97 E-value=18 Score=31.35 Aligned_cols=58 Identities=21% Similarity=0.225 Sum_probs=42.2
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHhhHhc---CCcEEEEcCCCchhHHHhHHHHHHHHhccc
Q 028267 142 GCESYLLRNLAELGYKEPTPIQRQAIPVLLS---DRECFACAPTGSGKTLAFLCPMLMKLRVLF 202 (211)
Q Consensus 142 ~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~---G~dvi~~A~TGsGKTlaf~lPil~~l~~~~ 202 (211)
..|..|+=.+.. ++ -..+.|......+.+ |.+.+.+.-.|.|||-+- +|++..+..+.
T Consensus 9 ~~P~wLl~E~e~-~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI-~Pmla~~LAdg 69 (229)
T PF12340_consen 9 EYPDWLLFEIES-NI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVI-VPMLALALADG 69 (229)
T ss_pred hChHHHHHHHHc-Cc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchH-HHHHHHHHcCC
Confidence 445555555543 33 357888887776664 689999999999999875 79998887654
No 311
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=59.62 E-value=8 Score=40.36 Aligned_cols=40 Identities=28% Similarity=0.242 Sum_probs=29.8
Q ss_pred CCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 158 EPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 158 ~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
.|+.+|-..=-.+..|+ |+-..||-||||+..+|+.-.-+
T Consensus 169 ~~yDVQliGgivLh~G~--IAEM~TGEGKTLvAtlp~yLnAL 208 (1112)
T PRK12901 169 VHYDVQLIGGVVLHQGK--IAEMATGEGKTLVATLPVYLNAL 208 (1112)
T ss_pred cccchHHhhhhhhcCCc--eeeecCCCCchhHHHHHHHHHHH
Confidence 46777777654555554 67899999999999999765544
No 312
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=59.61 E-value=8.2 Score=35.28 Aligned_cols=28 Identities=25% Similarity=0.433 Sum_probs=22.0
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+.||-++..+|.|||||... +.|-+-|-
T Consensus 62 maGravLlaGppgtGKTAlA-laisqELG 89 (456)
T KOG1942|consen 62 MAGRAVLLAGPPGTGKTALA-LAISQELG 89 (456)
T ss_pred ccCcEEEEecCCCCchhHHH-HHHHHHhC
Confidence 57999999999999999744 55555543
No 313
>PHA02542 41 41 helicase; Provisional
Probab=59.51 E-value=12 Score=35.68 Aligned_cols=25 Identities=24% Similarity=0.224 Sum_probs=18.2
Q ss_pred cEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 175 ECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 175 dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
=+|+.|++|.|||. |++-+......
T Consensus 192 LiiIaarPgmGKTt-falniA~~~a~ 216 (473)
T PHA02542 192 LNVLLAGVNVGKSL-GLCSLAADYLQ 216 (473)
T ss_pred EEEEEcCCCccHHH-HHHHHHHHHHh
Confidence 36779999999997 55666655543
No 314
>PRK08939 primosomal protein DnaI; Reviewed
Probab=59.21 E-value=14 Score=33.10 Aligned_cols=27 Identities=15% Similarity=0.258 Sum_probs=20.0
Q ss_pred cCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 172 SDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
.++.+++.+++|+|||... ..+...+.
T Consensus 155 ~~~gl~L~G~~G~GKThLa-~Aia~~l~ 181 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLL-AAIANELA 181 (306)
T ss_pred CCCeEEEECCCCCCHHHHH-HHHHHHHH
Confidence 3578999999999999754 34555554
No 315
>PRK06904 replicative DNA helicase; Validated
Probab=58.95 E-value=21 Score=33.84 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=19.7
Q ss_pred CCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 173 DRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
|.=+|+.|+||.|||. |++-+..++.
T Consensus 221 G~LiiIaarPg~GKTa-falnia~~~a 246 (472)
T PRK06904 221 SDLIIVAARPSMGKTT-FAMNLCENAA 246 (472)
T ss_pred CcEEEEEeCCCCChHH-HHHHHHHHHH
Confidence 3446779999999998 7777776654
No 316
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=58.36 E-value=19 Score=32.31 Aligned_cols=53 Identities=13% Similarity=0.117 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHhhHhcC----CcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 143 CESYLLRNLAELGYKEPTPIQRQAIPVLLSD----RECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 143 l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G----~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
|...+.+.|.+.++..+.+- .-+..-+.+ .=+++++++|||||. .+.-+..+|
T Consensus 60 l~~~V~~~L~~~~~~~~~~~--y~~~~~i~~~~~p~iIlI~G~sgsGKSt-lA~~La~~l 116 (301)
T PRK04220 60 LRRRVYYKLIEKDYEEVAEK--YLLWRRIRKSKEPIIILIGGASGVGTST-IAFELASRL 116 (301)
T ss_pred HHHHHHHHHHHhCcHhHHHH--HHHHHHHhcCCCCEEEEEECCCCCCHHH-HHHHHHHHh
Confidence 34556777777777665432 222222222 248899999999998 334444544
No 317
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=58.25 E-value=6.8 Score=26.71 Aligned_cols=14 Identities=29% Similarity=0.349 Sum_probs=11.7
Q ss_pred EEEEcCCCchhHHH
Q 028267 176 CFACAPTGSGKTLA 189 (211)
Q Consensus 176 vi~~A~TGsGKTla 189 (211)
++++++.|||||..
T Consensus 2 i~i~G~~gsGKst~ 15 (69)
T cd02019 2 IAITGGSGSGKSTV 15 (69)
T ss_pred EEEECCCCCCHHHH
Confidence 56789999999873
No 318
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=57.75 E-value=8.9 Score=38.18 Aligned_cols=18 Identities=33% Similarity=0.617 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCchhHHH
Q 028267 172 SDRECFACAPTGSGKTLA 189 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTla 189 (211)
.++.+++.+++|||||..
T Consensus 211 ~~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CCceEEEECCCCCChHHH
Confidence 457899999999999964
No 319
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=57.36 E-value=7.9 Score=36.25 Aligned_cols=20 Identities=35% Similarity=0.459 Sum_probs=17.0
Q ss_pred cCCcEEEEcCCCchhHHHhH
Q 028267 172 SDRECFACAPTGSGKTLAFL 191 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf~ 191 (211)
.++-++.++|||.|||-+.+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlA 221 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLA 221 (407)
T ss_pred cCcEEEEECCCCCcHHHHHH
Confidence 37889999999999997654
No 320
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=56.80 E-value=8.9 Score=38.59 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=20.0
Q ss_pred HHHHHHhhHhcCCcEEEEcCCCchhHHH
Q 028267 162 IQRQAIPVLLSDRECFACAPTGSGKTLA 189 (211)
Q Consensus 162 iQ~~aip~il~G~dvi~~A~TGsGKTla 189 (211)
.+.+-+..|....=||+++.||||||.-
T Consensus 360 ~R~~ll~~ir~n~vvvivgETGSGKTTQ 387 (1042)
T KOG0924|consen 360 CRDQLLSVIRENQVVVIVGETGSGKTTQ 387 (1042)
T ss_pred HHHHHHHHHhhCcEEEEEecCCCCchhh
Confidence 3444444455667789999999999974
No 321
>PRK08006 replicative DNA helicase; Provisional
Probab=56.69 E-value=22 Score=33.78 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=19.0
Q ss_pred CCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 173 DRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
|.=+|+.|++|.|||. |++-+..++.
T Consensus 224 G~LiiIaarPgmGKTa-falnia~~~a 249 (471)
T PRK08006 224 SDLIIVAARPSMGKTT-FAMNLCENAA 249 (471)
T ss_pred CcEEEEEeCCCCCHHH-HHHHHHHHHH
Confidence 3446779999999997 6666666653
No 322
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=56.60 E-value=13 Score=33.25 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=18.2
Q ss_pred hHhcCCcEEEEcCCCchhHHHh
Q 028267 169 VLLSDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 169 ~il~G~dvi~~A~TGsGKTlaf 190 (211)
+...+..|++++.+||||+...
T Consensus 25 ~a~~~~pVlI~GE~GtGK~~lA 46 (326)
T PRK11608 25 LAPLDKPVLIIGERGTGKELIA 46 (326)
T ss_pred HhCCCCCEEEECCCCCcHHHHH
Confidence 3456788999999999999854
No 323
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=56.37 E-value=23 Score=39.55 Aligned_cols=34 Identities=32% Similarity=0.316 Sum_probs=29.1
Q ss_pred CCCcHHHHHHHhhHhcC--CcEEEEcCCCchhHHHh
Q 028267 157 KEPTPIQRQAIPVLLSD--RECFACAPTGSGKTLAF 190 (211)
Q Consensus 157 ~~pt~iQ~~aip~il~G--~dvi~~A~TGsGKTlaf 190 (211)
..+++.|..|+-.++.+ +-+++++..|||||...
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l 1053 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTML 1053 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhH
Confidence 46899999999999876 45778899999999765
No 324
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=56.30 E-value=19 Score=26.51 Aligned_cols=16 Identities=25% Similarity=0.389 Sum_probs=12.9
Q ss_pred EEEEcCCCchhHHHhH
Q 028267 176 CFACAPTGSGKTLAFL 191 (211)
Q Consensus 176 vi~~A~TGsGKTlaf~ 191 (211)
|++.+++|+|||...-
T Consensus 1 I~i~G~~G~GKS~l~~ 16 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAK 16 (107)
T ss_pred CEEECCCCCCHHHHHH
Confidence 4678999999998653
No 325
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=56.25 E-value=17 Score=36.24 Aligned_cols=25 Identities=12% Similarity=0.194 Sum_probs=18.9
Q ss_pred CcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 174 RECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
.+++++|+||||||..-.. ++..+.
T Consensus 431 ~n~~I~G~tGsGKS~~~~~-l~~~~~ 455 (797)
T TIGR02746 431 YNIAVVGGSGAGKSFFMQE-LIVDNL 455 (797)
T ss_pred cceEEEcCCCCCHHHHHHH-HHHHHH
Confidence 4799999999999987553 444444
No 326
>PRK09354 recA recombinase A; Provisional
Probab=56.09 E-value=13 Score=34.01 Aligned_cols=27 Identities=22% Similarity=0.183 Sum_probs=19.8
Q ss_pred CCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 173 DRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
|+=+.+.+++|||||.- ++.++...+.
T Consensus 60 G~IteI~G~~GsGKTtL-al~~~~~~~~ 86 (349)
T PRK09354 60 GRIVEIYGPESSGKTTL-ALHAIAEAQK 86 (349)
T ss_pred CeEEEEECCCCCCHHHH-HHHHHHHHHH
Confidence 66688999999999984 4555555444
No 327
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=55.67 E-value=14 Score=36.84 Aligned_cols=61 Identities=28% Similarity=0.425 Sum_probs=34.8
Q ss_pred eccCCCCCCchhhhhhcccCCCCHHHHHHHHHc-C-CCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHH
Q 028267 122 VSGANVPSPLRTFVKLSSRFGCESYLLRNLAEL-G-YKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLA 189 (211)
Q Consensus 122 v~g~~~p~p~~~f~~l~~~~~l~~~ll~~l~~~-g-~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTla 189 (211)
+.|...|.+-.+|.++- |+...+.+ |+.+ . +.+|-..+..-+ .=-+.|++.+|+|+|||..
T Consensus 177 ~~~~~~~~snv~f~diG---G~d~~~~e-l~~li~~i~~Pe~~~~lGv---~PprGvLlHGPPGCGKT~l 239 (802)
T KOG0733|consen 177 VEGLEFPESNVSFSDIG---GLDKTLAE-LCELIIHIKHPEVFSSLGV---RPPRGVLLHGPPGCGKTSL 239 (802)
T ss_pred hcccCCCCCCcchhhcc---ChHHHHHH-HHHHHHHhcCchhHhhcCC---CCCCceeeeCCCCccHHHH
Confidence 44455555555777772 45444333 3332 1 445544443321 1237899999999999974
No 328
>PLN02199 shikimate kinase
Probab=55.48 E-value=12 Score=33.62 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=19.9
Q ss_pred HHhhHhcCCcEEEEcCCCchhHHH
Q 028267 166 AIPVLLSDRECFACAPTGSGKTLA 189 (211)
Q Consensus 166 aip~il~G~dvi~~A~TGsGKTla 189 (211)
.|-..+.|+.|++++.+|||||..
T Consensus 95 ~i~~~l~~~~I~LIG~~GSGKSTV 118 (303)
T PLN02199 95 EVKPYLNGRSMYLVGMMGSGKTTV 118 (303)
T ss_pred HHHHHcCCCEEEEECCCCCCHHHH
Confidence 344567799999999999999974
No 329
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=55.34 E-value=12 Score=34.98 Aligned_cols=52 Identities=15% Similarity=0.201 Sum_probs=31.7
Q ss_pred CchhhhhhcccCCCCHHHHHHHHH---cCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHH
Q 028267 130 PLRTFVKLSSRFGCESYLLRNLAE---LGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLA 189 (211)
Q Consensus 130 p~~~f~~l~~~~~l~~~ll~~l~~---~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTla 189 (211)
..++|+.+...|.+++..+..+.- .+|-. +|-+.--+-+++.+|.|+|||+.
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~--------~~~ik~PlgllL~GPPGcGKTll 164 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLA--------LPNIKVPLILGIWGGKGQGKSFQ 164 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHHhhhhh--------ccCCCCCeEEEeeCCCCCCHHHH
Confidence 345677776777777777665421 12211 11122235688899999999985
No 330
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=55.31 E-value=9 Score=29.15 Aligned_cols=21 Identities=24% Similarity=0.191 Sum_probs=16.8
Q ss_pred cCCcEEEEcCCCchhHHHhHH
Q 028267 172 SDRECFACAPTGSGKTLAFLC 192 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf~l 192 (211)
.|.-+++.+++|||||..+.+
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~ 34 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALE 34 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHH
Confidence 456688999999999986544
No 331
>PRK06321 replicative DNA helicase; Provisional
Probab=55.16 E-value=16 Score=34.81 Aligned_cols=24 Identities=17% Similarity=0.095 Sum_probs=18.5
Q ss_pred cEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 175 ECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 175 dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
=+|+.|++|.|||. |++-+...+.
T Consensus 228 LiiiaarPgmGKTa-fal~ia~~~a 251 (472)
T PRK06321 228 LMILAARPAMGKTA-LALNIAENFC 251 (472)
T ss_pred EEEEEeCCCCChHH-HHHHHHHHHH
Confidence 35779999999997 5666777664
No 332
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=55.12 E-value=15 Score=29.70 Aligned_cols=20 Identities=35% Similarity=0.395 Sum_probs=15.6
Q ss_pred hcCCcEEEEcCCCchhHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf 190 (211)
.....|++.+.+||||++..
T Consensus 20 ~~~~pVlI~GE~GtGK~~lA 39 (168)
T PF00158_consen 20 SSDLPVLITGETGTGKELLA 39 (168)
T ss_dssp TSTS-EEEECSTTSSHHHHH
T ss_pred CCCCCEEEEcCCCCcHHHHH
Confidence 34467999999999999854
No 333
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=55.07 E-value=16 Score=32.94 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=18.1
Q ss_pred hHhcCCcEEEEcCCCchhHHHh
Q 028267 169 VLLSDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 169 ~il~G~dvi~~A~TGsGKTlaf 190 (211)
+...+..|++.+.+||||++..
T Consensus 18 ~a~~~~pVLI~GE~GtGK~~lA 39 (329)
T TIGR02974 18 LAPLDRPVLIIGERGTGKELIA 39 (329)
T ss_pred HhCCCCCEEEECCCCChHHHHH
Confidence 3456788999999999998864
No 334
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=54.92 E-value=12 Score=39.00 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=16.7
Q ss_pred EEEEcCCCchhHHHhHHHHHHHHh
Q 028267 176 CFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 176 vi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+++.++||||||++-- -++..|.
T Consensus 784 LYIyG~PGTGKTATVK-~VLrELq 806 (1164)
T PTZ00112 784 LYISGMPGTGKTATVY-SVIQLLQ 806 (1164)
T ss_pred EEEECCCCCCHHHHHH-HHHHHHH
Confidence 4599999999999853 2445553
No 335
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=54.90 E-value=7.8 Score=38.76 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=16.8
Q ss_pred HhhHhcCCcEEEEcCCCchhHH
Q 028267 167 IPVLLSDRECFACAPTGSGKTL 188 (211)
Q Consensus 167 ip~il~G~dvi~~A~TGsGKTl 188 (211)
+.++-...=+|+.+.||||||.
T Consensus 274 l~av~e~QVLiI~GeTGSGKTT 295 (902)
T KOG0923|consen 274 LKAVKEHQVLIIVGETGSGKTT 295 (902)
T ss_pred HHHHHhCcEEEEEcCCCCCccc
Confidence 3344455568999999999997
No 336
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=54.39 E-value=13 Score=35.91 Aligned_cols=16 Identities=31% Similarity=0.503 Sum_probs=13.8
Q ss_pred cEEEEcCCCchhHHHh
Q 028267 175 ECFACAPTGSGKTLAF 190 (211)
Q Consensus 175 dvi~~A~TGsGKTlaf 190 (211)
=+|+.+|+|||||.+-
T Consensus 47 iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 47 ILLLTGPSGCGKTTTV 62 (519)
T ss_pred eEEEECCCCCCHHHHH
Confidence 3888999999999864
No 337
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=54.31 E-value=8.9 Score=33.33 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=17.1
Q ss_pred CcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 174 RECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
..+++.+|+|+|||... .-+...+
T Consensus 31 ~~~ll~Gp~G~GKT~la-~~ia~~~ 54 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLA-HIIANEM 54 (305)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHh
Confidence 46999999999999744 2334443
No 338
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=54.16 E-value=25 Score=36.79 Aligned_cols=42 Identities=21% Similarity=0.177 Sum_probs=32.5
Q ss_pred CCcHHHHHHHhhHh----cCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 158 EPTPIQRQAIPVLL----SDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 158 ~pt~iQ~~aip~il----~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
.+.++|..++..++ .|.+.|++-..|.|||+-- |.+|..|..
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQa-IalL~~L~~ 214 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQT-ISLLGYLHE 214 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHH-HHHHHHHHH
Confidence 56788999888764 6788899999999999964 455655544
No 339
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=53.79 E-value=8.2 Score=39.43 Aligned_cols=16 Identities=25% Similarity=0.509 Sum_probs=13.2
Q ss_pred cEEEEcCCCchhHHHh
Q 028267 175 ECFACAPTGSGKTLAF 190 (211)
Q Consensus 175 dvi~~A~TGsGKTlaf 190 (211)
=++++++||||||-.|
T Consensus 27 i~lI~G~nGsGKSSIl 42 (908)
T COG0419 27 IFLIVGPNGAGKSSIL 42 (908)
T ss_pred eEEEECCCCCcHHHHH
Confidence 3667999999999854
No 340
>CHL00195 ycf46 Ycf46; Provisional
Probab=53.76 E-value=8.7 Score=36.73 Aligned_cols=18 Identities=28% Similarity=0.410 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCchhHHHh
Q 028267 173 DRECFACAPTGSGKTLAF 190 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf 190 (211)
.+.++..+|+|||||+..
T Consensus 259 pkGILL~GPpGTGKTllA 276 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTA 276 (489)
T ss_pred CceEEEECCCCCcHHHHH
Confidence 367999999999999753
No 341
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=53.21 E-value=16 Score=36.14 Aligned_cols=40 Identities=33% Similarity=0.411 Sum_probs=30.3
Q ss_pred CCcHHHHHHHhhHhcC-----CcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 158 EPTPIQRQAIPVLLSD-----RECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 158 ~pt~iQ~~aip~il~G-----~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
.|++.|..+|..+..+ +..++.+.+|||||+..+ .++..+
T Consensus 12 ~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia-~l~~~~ 56 (652)
T PRK05298 12 KPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMA-NVIARL 56 (652)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHH-HHHHHh
Confidence 6899999999987543 256789999999999754 344443
No 342
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=52.99 E-value=14 Score=32.79 Aligned_cols=19 Identities=37% Similarity=0.767 Sum_probs=16.5
Q ss_pred CcEEEEcCCCchhHHHhHH
Q 028267 174 RECFACAPTGSGKTLAFLC 192 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf~l 192 (211)
.++|+.+|+|+|||.+.++
T Consensus 49 P~liisGpPG~GKTTsi~~ 67 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILC 67 (333)
T ss_pred CceEeeCCCCCchhhHHHH
Confidence 5899999999999987653
No 343
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=52.70 E-value=12 Score=30.06 Aligned_cols=28 Identities=21% Similarity=0.164 Sum_probs=20.7
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+..|.-+.+.+++|+|||.. +-+|..+.
T Consensus 25 i~~Ge~~~i~G~nGsGKStL--l~~l~G~~ 52 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTL--LQLLTGDL 52 (178)
T ss_pred EcCCCEEEEECCCCCCHHHH--HHHHhccC
Confidence 44688899999999999974 34455443
No 344
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=52.49 E-value=19 Score=34.14 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=17.3
Q ss_pred CCcEEEEcCCCchhHHHhHHHHHHH
Q 028267 173 DRECFACAPTGSGKTLAFLCPMLMK 197 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf~lPil~~ 197 (211)
|.-+++.+++|+|||.-- +-++..
T Consensus 273 g~~~li~G~~G~GKT~l~-~~~~~~ 296 (509)
T PRK09302 273 GSIILVSGATGTGKTLLA-SKFAEA 296 (509)
T ss_pred CcEEEEEcCCCCCHHHHH-HHHHHH
Confidence 567888999999999843 344433
No 345
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=52.12 E-value=11 Score=30.60 Aligned_cols=28 Identities=18% Similarity=0.204 Sum_probs=20.4
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+..|.-+.+.+++|+|||.- +-+|..+.
T Consensus 21 i~~Ge~~~i~G~nGsGKSTL--l~~l~G~~ 48 (206)
T TIGR03608 21 IEKGKMYAIIGESGSGKSTL--LNIIGLLE 48 (206)
T ss_pred EeCCcEEEEECCCCCCHHHH--HHHHhcCC
Confidence 34688899999999999973 44455443
No 346
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=51.85 E-value=12 Score=30.67 Aligned_cols=28 Identities=25% Similarity=0.472 Sum_probs=20.4
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+..|.-+.+.+++|||||. ++-+|..+.
T Consensus 24 i~~G~~~~i~G~nGsGKST--Ll~~l~G~~ 51 (214)
T cd03292 24 ISAGEFVFLVGPSGAGKST--LLKLIYKEE 51 (214)
T ss_pred EcCCCEEEEECCCCCCHHH--HHHHHhcCC
Confidence 3468888899999999997 344555543
No 347
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=51.78 E-value=8.7 Score=37.63 Aligned_cols=39 Identities=23% Similarity=0.330 Sum_probs=30.2
Q ss_pred hcCCcEEEEcCCCchhHHHhH-----HHHHHHHhcccCCCceEE
Q 028267 171 LSDRECFACAPTGSGKTLAFL-----CPMLMKLRVLFIPFDYFC 209 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~-----lPil~~l~~~~~~~~~~~ 209 (211)
-.|.++++.+|.||||.-.|- .|+.+.+..-|.+..+|-
T Consensus 506 ~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFY 549 (728)
T KOG0064|consen 506 EPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFY 549 (728)
T ss_pred cCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEe
Confidence 468999999999999999885 577666666666665553
No 348
>PRK04195 replication factor C large subunit; Provisional
Probab=51.65 E-value=26 Score=33.09 Aligned_cols=17 Identities=29% Similarity=0.487 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCchhHHH
Q 028267 173 DRECFACAPTGSGKTLA 189 (211)
Q Consensus 173 G~dvi~~A~TGsGKTla 189 (211)
.+.+++.+|+|+|||..
T Consensus 39 ~~~lLL~GppG~GKTtl 55 (482)
T PRK04195 39 KKALLLYGPPGVGKTSL 55 (482)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 46799999999999964
No 349
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=51.55 E-value=12 Score=33.21 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=14.7
Q ss_pred CcEEEEcCCCchhHHHh
Q 028267 174 RECFACAPTGSGKTLAF 190 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf 190 (211)
..+++.+++|+|||...
T Consensus 52 ~~~ll~GppG~GKT~la 68 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLA 68 (328)
T ss_pred CcEEEECCCCccHHHHH
Confidence 46999999999999754
No 350
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=51.20 E-value=26 Score=33.67 Aligned_cols=18 Identities=22% Similarity=0.167 Sum_probs=15.0
Q ss_pred CcEEEEcCCCchhHHHhH
Q 028267 174 RECFACAPTGSGKTLAFL 191 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf~ 191 (211)
+-+|.+++.|+|||.+..
T Consensus 44 ~a~Lf~Gp~G~GKTT~Ar 61 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSAR 61 (507)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 368999999999997653
No 351
>COG3950 Predicted ATP-binding protein involved in virulence [General function prediction only]
Probab=51.15 E-value=16 Score=34.00 Aligned_cols=16 Identities=38% Similarity=0.594 Sum_probs=13.9
Q ss_pred CcEEEEcCCCchhHHH
Q 028267 174 RECFACAPTGSGKTLA 189 (211)
Q Consensus 174 ~dvi~~A~TGsGKTla 189 (211)
.-+|++||.|+|||..
T Consensus 25 ~ttIivgpNGsGKTtv 40 (440)
T COG3950 25 ETTIIVGPNGSGKTTV 40 (440)
T ss_pred ceEEEECCCCCChhhH
Confidence 3688999999999985
No 352
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=51.08 E-value=12 Score=34.16 Aligned_cols=29 Identities=21% Similarity=0.289 Sum_probs=20.8
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
+-.|.-+++.+|+|||||.. |=+|--|..
T Consensus 26 i~~Gef~vllGPSGcGKSTl--Lr~IAGLe~ 54 (338)
T COG3839 26 IEDGEFVVLLGPSGCGKSTL--LRMIAGLEE 54 (338)
T ss_pred EcCCCEEEEECCCCCCHHHH--HHHHhCCCC
Confidence 34677799999999999983 445544443
No 353
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=50.84 E-value=12 Score=30.92 Aligned_cols=18 Identities=33% Similarity=0.374 Sum_probs=14.2
Q ss_pred cCCcEEEEcCCCchhHHH
Q 028267 172 SDRECFACAPTGSGKTLA 189 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTla 189 (211)
.+.-.++++++|+|||..
T Consensus 23 ~~~~~~i~G~NGsGKS~i 40 (220)
T PF02463_consen 23 SPGLNVIVGPNGSGKSNI 40 (220)
T ss_dssp TSSEEEEEESTTSSHHHH
T ss_pred CCCCEEEEcCCCCCHHHH
Confidence 344477899999999984
No 354
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=50.83 E-value=43 Score=33.36 Aligned_cols=64 Identities=20% Similarity=0.128 Sum_probs=37.4
Q ss_pred ccCCCCHHH-HHHHHHcCCCCCcH----HHHHHHhhHhc--CCcEEEEcCCCchhHHHhHHHHHHHHhccc
Q 028267 139 SRFGCESYL-LRNLAELGYKEPTP----IQRQAIPVLLS--DRECFACAPTGSGKTLAFLCPMLMKLRVLF 202 (211)
Q Consensus 139 ~~~~l~~~l-l~~l~~~g~~~pt~----iQ~~aip~il~--G~dvi~~A~TGsGKTlaf~lPil~~l~~~~ 202 (211)
+..++.+++ +.+|..+--.++-. ||..==.+|.. +.=+||++..|||||.+.+--+.--|...+
T Consensus 185 sd~~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R 255 (747)
T COG3973 185 SDTGGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYR 255 (747)
T ss_pred cCCchHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccc
Confidence 344555554 45565554444333 44444344443 455899999999999887655444444433
No 355
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=50.74 E-value=29 Score=35.19 Aligned_cols=44 Identities=27% Similarity=0.359 Sum_probs=31.0
Q ss_pred CCCcHHHHHHHhhHhc---CC-------cEEEEcCCCchhHHHhHHHHHHHHhcc
Q 028267 157 KEPTPIQRQAIPVLLS---DR-------ECFACAPTGSGKTLAFLCPMLMKLRVL 201 (211)
Q Consensus 157 ~~pt~iQ~~aip~il~---G~-------dvi~~A~TGsGKTlaf~lPil~~l~~~ 201 (211)
..+.|+|...|..++. |. .+|+.-..|+|||+-. |++|..+++.
T Consensus 237 ~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~-IsflwtlLrq 290 (776)
T KOG0390|consen 237 KILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQC-ISFIWTLLRQ 290 (776)
T ss_pred hhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHH-HHHHHHHHHh
Confidence 3578999999987743 22 4666777899999976 5555555444
No 356
>PRK07773 replicative DNA helicase; Validated
Probab=50.71 E-value=18 Score=36.94 Aligned_cols=26 Identities=19% Similarity=0.152 Sum_probs=19.6
Q ss_pred CcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 174 RECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
.=+|+.|++|+|||. |++-++..+..
T Consensus 218 ~livIagrPg~GKT~-fal~ia~~~a~ 243 (886)
T PRK07773 218 QLIIVAARPSMGKTT-FGLDFARNCAI 243 (886)
T ss_pred cEEEEEeCCCCCcHH-HHHHHHHHHHH
Confidence 347889999999997 56777666543
No 357
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=50.66 E-value=24 Score=27.77 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=19.9
Q ss_pred cCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 172 SDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
.|.-+++.+..|+|||. |+-.++..|.
T Consensus 21 ~~~~i~l~G~lGaGKTt-l~~~l~~~lg 47 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTT-LVQGLLQGLG 47 (133)
T ss_pred CCCEEEEEcCCCCCHHH-HHHHHHHHcC
Confidence 45567799999999996 5556666654
No 358
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=50.42 E-value=20 Score=33.89 Aligned_cols=35 Identities=26% Similarity=0.269 Sum_probs=22.6
Q ss_pred CCcEEEEcCCCchhHHHhHHHHHHHHhcccCCCceEE
Q 028267 173 DRECFACAPTGSGKTLAFLCPMLMKLRVLFIPFDYFC 209 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf~lPil~~l~~~~~~~~~~~ 209 (211)
|.-+++.+++|+|||. |++-++...... +...+|+
T Consensus 263 gs~~li~G~~G~GKt~-l~~~f~~~~~~~-ge~~~y~ 297 (484)
T TIGR02655 263 DSIILATGATGTGKTL-LVSKFLENACAN-KERAILF 297 (484)
T ss_pred CcEEEEECCCCCCHHH-HHHHHHHHHHHC-CCeEEEE
Confidence 4679999999999998 444555544333 2334443
No 359
>PRK05642 DNA replication initiation factor; Validated
Probab=50.18 E-value=24 Score=29.93 Aligned_cols=25 Identities=12% Similarity=0.263 Sum_probs=17.3
Q ss_pred CcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 174 RECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
..+++++++|+|||-- +..+...+.
T Consensus 46 ~~l~l~G~~G~GKTHL-l~a~~~~~~ 70 (234)
T PRK05642 46 SLIYLWGKDGVGRSHL-LQAACLRFE 70 (234)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHH
Confidence 4588999999999964 334444443
No 360
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=49.84 E-value=13 Score=30.47 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=20.5
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+..|.-+.+.+++|+|||.. +-+|..+.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTL--l~~l~G~~ 50 (213)
T cd03259 23 VEPGEFLALLGPSGCGKTTL--LRLIAGLE 50 (213)
T ss_pred EcCCcEEEEECCCCCCHHHH--HHHHhCCC
Confidence 34677889999999999974 34455543
No 361
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=49.82 E-value=19 Score=36.39 Aligned_cols=25 Identities=28% Similarity=0.582 Sum_probs=18.6
Q ss_pred cEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 175 ECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 175 dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
+.++.++||||||..-.. ++.++..
T Consensus 443 n~~I~G~tGsGKS~l~~~-l~~~~~~ 467 (811)
T PRK13873 443 HTLVVGPTGAGKSVLLAL-MALQFRR 467 (811)
T ss_pred eEEEECCCCCCHHHHHHH-HHHHhhh
Confidence 788999999999986554 4444443
No 362
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=49.40 E-value=14 Score=30.88 Aligned_cols=27 Identities=19% Similarity=0.269 Sum_probs=20.2
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
..|.-+.+.+++|||||.- +-+|..+.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTL--l~~l~G~~ 57 (225)
T PRK10247 31 RAGEFKLITGPSGCGKSTL--LKIVASLI 57 (225)
T ss_pred cCCCEEEEECCCCCCHHHH--HHHHhccc
Confidence 4677889999999999974 34555543
No 363
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=49.34 E-value=14 Score=29.48 Aligned_cols=28 Identities=21% Similarity=0.285 Sum_probs=20.6
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+..|.-+.+.+++|||||.-+ -+|..+.
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl--~~l~G~~ 50 (173)
T cd03230 23 VEKGEIYGLLGPNGAGKTTLI--KIILGLL 50 (173)
T ss_pred EcCCcEEEEECCCCCCHHHHH--HHHhCCC
Confidence 356788999999999999844 4455543
No 364
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=48.97 E-value=14 Score=30.25 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=20.7
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+..|.-+.+.+++|||||.-+ =+|..+.
T Consensus 25 i~~G~~~~l~G~nGsGKSTLl--~~i~Gl~ 52 (214)
T TIGR02673 25 IRKGEFLFLTGPSGAGKTTLL--KLLYGAL 52 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHH--HHHhCCC
Confidence 456777889999999999844 4455554
No 365
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=48.91 E-value=18 Score=37.10 Aligned_cols=25 Identities=28% Similarity=0.579 Sum_probs=18.3
Q ss_pred CCcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 173 DRECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
..+++++++||||||.... -++.++
T Consensus 475 n~n~~I~G~TGSGKS~l~~-~li~q~ 499 (893)
T TIGR03744 475 NAHLLILGPTGAGKSATLT-NLLMQV 499 (893)
T ss_pred cccEEEECCCCCCHHHHHH-HHHHHH
Confidence 3578999999999998654 334443
No 366
>PLN02748 tRNA dimethylallyltransferase
Probab=48.89 E-value=12 Score=35.57 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=16.3
Q ss_pred hcCCcEEEEcCCCchhHHHhH
Q 028267 171 LSDRECFACAPTGSGKTLAFL 191 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~ 191 (211)
-.+.=|++.++||||||-..+
T Consensus 20 ~~~~~i~i~GptgsGKs~la~ 40 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAV 40 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 345568999999999996544
No 367
>PHA00547 hypothetical protein
Probab=48.80 E-value=32 Score=30.96 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=17.7
Q ss_pred hhHhcCCcEEEEcCCCchhHHHhH
Q 028267 168 PVLLSDRECFACAPTGSGKTLAFL 191 (211)
Q Consensus 168 p~il~G~dvi~~A~TGsGKTlaf~ 191 (211)
..+.+..=-+++++-|||||+.-.
T Consensus 70 K~ik~spis~i~G~LGsGKTlLMT 93 (337)
T PHA00547 70 NFIWDNPLSVIIGKLGTGKTLLLT 93 (337)
T ss_pred HHHhcCCceEEeccCCCchhHHHH
Confidence 344555557889999999999543
No 368
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=48.66 E-value=14 Score=29.60 Aligned_cols=28 Identities=21% Similarity=0.160 Sum_probs=21.0
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
..|.-+.+.+++|||||.- +-+|..+..
T Consensus 23 ~~G~~~~l~G~nGsGKStL--l~~i~G~~~ 50 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTL--LKTLAGLLK 50 (180)
T ss_pred CCCCEEEEECCCCCCHHHH--HHHHhCCCC
Confidence 4577888999999999973 455666543
No 369
>PRK09087 hypothetical protein; Validated
Probab=48.66 E-value=11 Score=32.09 Aligned_cols=18 Identities=33% Similarity=0.388 Sum_probs=14.5
Q ss_pred CCcEEEEcCCCchhHHHh
Q 028267 173 DRECFACAPTGSGKTLAF 190 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf 190 (211)
+.-+++.+++|||||--.
T Consensus 44 ~~~l~l~G~~GsGKThLl 61 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLA 61 (226)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 344899999999999743
No 370
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=48.62 E-value=14 Score=30.15 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=20.2
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
..|.-+.+.+++|||||. ++=+|..+.
T Consensus 24 ~~G~~~~l~G~nGsGKST--Ll~~l~G~~ 50 (213)
T cd03262 24 KKGEVVVIIGPSGSGKST--LLRCINLLE 50 (213)
T ss_pred CCCCEEEEECCCCCCHHH--HHHHHhCCC
Confidence 468889999999999997 344555544
No 371
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=48.57 E-value=14 Score=30.36 Aligned_cols=27 Identities=26% Similarity=0.263 Sum_probs=19.9
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
..|.-+.+.+++|+|||.- +=+|..+.
T Consensus 28 ~~G~~~~l~G~nGsGKSTL--l~~i~Gl~ 54 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTL--LNILGGLD 54 (218)
T ss_pred cCCCEEEEEcCCCCCHHHH--HHHHhCCc
Confidence 4678899999999999973 34454443
No 372
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=48.51 E-value=11 Score=35.09 Aligned_cols=18 Identities=33% Similarity=0.457 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCchhHHHh
Q 028267 173 DRECFACAPTGSGKTLAF 190 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf 190 (211)
-+|++.++|||-|||-..
T Consensus 50 PKNILMIGpTGVGKTEIA 67 (444)
T COG1220 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_pred ccceEEECCCCCcHHHHH
Confidence 379999999999999743
No 373
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=48.38 E-value=24 Score=31.06 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=18.5
Q ss_pred HHhhHhc-C--CcEEEEcCCCchhHHHh
Q 028267 166 AIPVLLS-D--RECFACAPTGSGKTLAF 190 (211)
Q Consensus 166 aip~il~-G--~dvi~~A~TGsGKTlaf 190 (211)
.++.++. | .++++.+++|+|||..+
T Consensus 101 ~l~~l~~~~~~~~~~i~g~~g~GKttl~ 128 (270)
T TIGR02858 101 LLPYLVRNNRVLNTLIISPPQCGKTTLL 128 (270)
T ss_pred HHHHHHhCCCeeEEEEEcCCCCCHHHHH
Confidence 3455553 3 57899999999999854
No 374
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=48.35 E-value=12 Score=33.67 Aligned_cols=18 Identities=28% Similarity=0.565 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCchhHHHh
Q 028267 173 DRECFACAPTGSGKTLAF 190 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf 190 (211)
-++|+--+|+|||||+..
T Consensus 151 PknVLFyGppGTGKTm~A 168 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMA 168 (368)
T ss_pred cceeEEECCCCccHHHHH
Confidence 479999999999999853
No 375
>PRK10908 cell division protein FtsE; Provisional
Probab=48.12 E-value=15 Score=30.46 Aligned_cols=28 Identities=14% Similarity=0.369 Sum_probs=20.5
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+..|.-+.+.+++|+|||.-+ -+|..+.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl--~~l~G~~ 52 (222)
T PRK10908 25 MRPGEMAFLTGHSGAGKSTLL--KLICGIE 52 (222)
T ss_pred EcCCCEEEEECCCCCCHHHHH--HHHhCCC
Confidence 346888899999999999854 3444443
No 376
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=48.05 E-value=21 Score=34.04 Aligned_cols=20 Identities=25% Similarity=0.346 Sum_probs=16.9
Q ss_pred hcCCcEEEEcCCCchhHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf 190 (211)
-.+..|++.+++||||+...
T Consensus 217 ~~~~pvli~Ge~GtGK~~lA 236 (534)
T TIGR01817 217 RSNSTVLLRGESGTGKELIA 236 (534)
T ss_pred CcCCCEEEECCCCccHHHHH
Confidence 45678999999999999854
No 377
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=47.85 E-value=20 Score=35.31 Aligned_cols=19 Identities=37% Similarity=0.496 Sum_probs=16.1
Q ss_pred hcCCcEEEEcCCCchhHHH
Q 028267 171 LSDRECFACAPTGSGKTLA 189 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTla 189 (211)
..+..|++.+++|||||+.
T Consensus 397 ~~~~pVLI~GE~GTGK~~l 415 (686)
T PRK15429 397 QSDSTVLILGETGTGKELI 415 (686)
T ss_pred CCCCCEEEECCCCcCHHHH
Confidence 4556899999999999974
No 378
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=47.75 E-value=15 Score=29.16 Aligned_cols=29 Identities=28% Similarity=0.479 Sum_probs=21.3
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
+..|.-+.+.+++|+|||. ++-+|..+..
T Consensus 25 i~~G~~~~l~G~nGsGKst--Ll~~i~G~~~ 53 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKST--LLKLLLRLYD 53 (171)
T ss_pred EcCCCEEEEECCCCCCHHH--HHHHHHcCCC
Confidence 3468889999999999997 3455555543
No 379
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=47.74 E-value=19 Score=33.78 Aligned_cols=22 Identities=27% Similarity=0.226 Sum_probs=18.6
Q ss_pred hHhcCCcEEEEcCCCchhHHHh
Q 028267 169 VLLSDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 169 ~il~G~dvi~~A~TGsGKTlaf 190 (211)
..-.|..|++.++||+||++..
T Consensus 97 ~ap~~~~vLi~GetGtGKel~A 118 (403)
T COG1221 97 YAPSGLPVLIIGETGTGKELFA 118 (403)
T ss_pred hCCCCCcEEEecCCCccHHHHH
Confidence 3446899999999999999954
No 380
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=47.65 E-value=29 Score=32.01 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=16.5
Q ss_pred CcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 174 RECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
+=+++.+|+|||||... -.+...|
T Consensus 79 ~il~L~GPPGsGKStla-~~La~~l 102 (361)
T smart00763 79 QILYLLGPVGGGKSSLV-ECLKRGL 102 (361)
T ss_pred cEEEEECCCCCCHHHHH-HHHHHHH
Confidence 34789999999999743 3344444
No 381
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=47.63 E-value=14 Score=34.70 Aligned_cols=20 Identities=30% Similarity=0.280 Sum_probs=16.6
Q ss_pred cCCcEEEEcCCCchhHHHhH
Q 028267 172 SDRECFACAPTGSGKTLAFL 191 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf~ 191 (211)
.|.-+.++++||+|||..+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtla 209 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTA 209 (420)
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35568899999999999775
No 382
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=47.59 E-value=25 Score=30.38 Aligned_cols=20 Identities=35% Similarity=0.366 Sum_probs=16.1
Q ss_pred cCCc-EEEEcCCCchhHHHhH
Q 028267 172 SDRE-CFACAPTGSGKTLAFL 191 (211)
Q Consensus 172 ~G~d-vi~~A~TGsGKTlaf~ 191 (211)
++.. ++..+|+|+|||.+..
T Consensus 22 ~~~halL~~Gp~G~Gktt~a~ 42 (325)
T COG0470 22 RLPHALLFYGPPGVGKTTAAL 42 (325)
T ss_pred CCCceeeeeCCCCCCHHHHHH
Confidence 3445 8999999999998754
No 383
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=47.44 E-value=15 Score=30.85 Aligned_cols=29 Identities=21% Similarity=0.277 Sum_probs=21.3
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
+..|.-+.+.+++|+|||..+ -+|..+..
T Consensus 22 i~~Ge~~~i~G~nG~GKStLl--~~l~G~~~ 50 (235)
T cd03299 22 VERGDYFVILGPTGSGKSVLL--ETIAGFIK 50 (235)
T ss_pred EcCCcEEEEECCCCCCHHHHH--HHHhCCcC
Confidence 346888999999999999854 45555533
No 384
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=47.26 E-value=27 Score=34.52 Aligned_cols=25 Identities=28% Similarity=0.243 Sum_probs=18.1
Q ss_pred cEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 175 ECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 175 dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
-|++.+++|+|||.. +..|...+..
T Consensus 316 pL~LyG~sGsGKTHL-L~AIa~~a~~ 340 (617)
T PRK14086 316 PLFIYGESGLGKTHL-LHAIGHYARR 340 (617)
T ss_pred cEEEECCCCCCHHHH-HHHHHHHHHH
Confidence 389999999999973 3355555544
No 385
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=47.24 E-value=15 Score=30.43 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=20.4
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
..|.-+.+.+++|+|||.- +-+|..+.
T Consensus 34 ~~Ge~~~i~G~nGsGKSTL--l~~i~Gl~ 60 (228)
T PRK10584 34 KRGETIALIGESGSGKSTL--LAILAGLD 60 (228)
T ss_pred cCCCEEEEECCCCCCHHHH--HHHHHcCC
Confidence 4688899999999999973 44555543
No 386
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=47.23 E-value=16 Score=36.25 Aligned_cols=47 Identities=17% Similarity=0.159 Sum_probs=30.8
Q ss_pred CHHHHHHHHHcCC----CCCcHHHHHHHhhHhc-C--CcEEEEcCCCchhHHHh
Q 028267 144 ESYLLRNLAELGY----KEPTPIQRQAIPVLLS-D--RECFACAPTGSGKTLAF 190 (211)
Q Consensus 144 ~~~ll~~l~~~g~----~~pt~iQ~~aip~il~-G--~dvi~~A~TGsGKTlaf 190 (211)
++..++....... -+++.|=..|+-.++. + ..||+.+.+|+|||-+-
T Consensus 50 ~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (679)
T cd00124 50 GPETIRKYRGKSRSELPPHVFAIADRAYRNMLRDRRNQSIIISGESGAGKTENT 103 (679)
T ss_pred CHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 4455554443332 3344566677776664 3 46999999999999985
No 387
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=47.22 E-value=10 Score=37.15 Aligned_cols=23 Identities=39% Similarity=0.729 Sum_probs=18.5
Q ss_pred hhHhcC--CcEEEEcCCCchhHHHh
Q 028267 168 PVLLSD--RECFACAPTGSGKTLAF 190 (211)
Q Consensus 168 p~il~G--~dvi~~A~TGsGKTlaf 190 (211)
+.|+.| -.|++-++||||||.+-
T Consensus 285 ~~IF~~G~ATCFAYGQTGSGKT~TM 309 (676)
T KOG0246|consen 285 KTIFEGGMATCFAYGQTGSGKTYTM 309 (676)
T ss_pred HHHHhCCceeeeeeccCCCCceeec
Confidence 445655 47999999999999876
No 388
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=47.16 E-value=15 Score=30.30 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=17.7
Q ss_pred HhcCCcEEEEcCCCchhHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf 190 (211)
+..|.-+.+.+++|+|||.-+
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl 41 (213)
T TIGR01277 21 VADGEIVAIMGPSGAGKSTLL 41 (213)
T ss_pred EeCCcEEEEECCCCCCHHHHH
Confidence 457888999999999999844
No 389
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=47.15 E-value=12 Score=38.77 Aligned_cols=15 Identities=40% Similarity=0.751 Sum_probs=13.0
Q ss_pred EEEEcCCCchhHHHh
Q 028267 176 CFACAPTGSGKTLAF 190 (211)
Q Consensus 176 vi~~A~TGsGKTlaf 190 (211)
++++++||+|||..|
T Consensus 29 ~~I~G~nGaGKSTil 43 (1042)
T TIGR00618 29 FLICGKTGAGKTTLL 43 (1042)
T ss_pred EEEECCCCCCHHHHH
Confidence 667999999999865
No 390
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=47.13 E-value=16 Score=28.45 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=18.6
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
..|.-+.+.+++|+|||.-+ =+|..+
T Consensus 23 ~~g~~~~i~G~nGsGKStll--~~l~g~ 48 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLL--RAIAGL 48 (157)
T ss_pred cCCCEEEEECCCCCCHHHHH--HHHhCC
Confidence 45777889999999999733 334444
No 391
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=47.04 E-value=16 Score=30.66 Aligned_cols=28 Identities=18% Similarity=0.290 Sum_probs=20.6
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+..|.-+.+++++|||||.-+ -+|..+.
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl--~~l~Gl~ 52 (243)
T TIGR02315 25 INPGEFVAIIGPSGAGKSTLL--RCINRLV 52 (243)
T ss_pred EcCCCEEEEECCCCCCHHHHH--HHHhCCc
Confidence 456888999999999999843 4454443
No 392
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=46.96 E-value=17 Score=28.36 Aligned_cols=28 Identities=11% Similarity=0.118 Sum_probs=20.1
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+..|.-+.+.+++|+|||.-+ -+|..+.
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl--~~l~G~~ 50 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLL--KLIAGEL 50 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHH--HHHcCCC
Confidence 346777889999999999744 3444443
No 393
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=46.94 E-value=16 Score=31.72 Aligned_cols=14 Identities=36% Similarity=0.349 Sum_probs=11.1
Q ss_pred EEEEcCCCchhHHH
Q 028267 176 CFACAPTGSGKTLA 189 (211)
Q Consensus 176 vi~~A~TGsGKTla 189 (211)
+=++++.|||||--
T Consensus 41 tEi~G~~gsGKTql 54 (256)
T PF08423_consen 41 TEIVGESGSGKTQL 54 (256)
T ss_dssp EEEEESTTSSHHHH
T ss_pred EEEEEecccccchH
Confidence 33689999999963
No 394
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=46.94 E-value=16 Score=30.13 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=20.6
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+..|.-+.+.+++|||||..+ -+|..+.
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl--~~i~G~~ 54 (220)
T cd03245 27 IRAGEKVAIIGRVGSGKSTLL--KLLAGLY 54 (220)
T ss_pred EcCCCEEEEECCCCCCHHHHH--HHHhcCc
Confidence 346788999999999999843 4555443
No 395
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=46.79 E-value=16 Score=29.96 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=21.4
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+..|.-+.+.+++|+|||. ++-+|..+.
T Consensus 23 i~~Ge~~~l~G~nGsGKST--Ll~~l~G~~ 50 (213)
T cd03301 23 IADGEFVVLLGPSGCGKTT--TLRMIAGLE 50 (213)
T ss_pred EcCCcEEEEECCCCCCHHH--HHHHHhCCC
Confidence 3468889999999999998 445666554
No 396
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=46.77 E-value=11 Score=37.42 Aligned_cols=24 Identities=38% Similarity=0.519 Sum_probs=19.2
Q ss_pred HhhHhcCC--cEEEEcCCCchhHHHh
Q 028267 167 IPVLLSDR--ECFACAPTGSGKTLAF 190 (211)
Q Consensus 167 ip~il~G~--dvi~~A~TGsGKTlaf 190 (211)
+..++.|. -|++-++||||||.+-
T Consensus 79 v~~~l~G~N~TVFAYG~TgSGKTyTM 104 (675)
T KOG0242|consen 79 LLSVLEGFNATVFAYGQTGSGKTYTM 104 (675)
T ss_pred HHHHhcCcccceeeecCCCCCCceEE
Confidence 34577885 5999999999999763
No 397
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=46.73 E-value=16 Score=31.23 Aligned_cols=28 Identities=25% Similarity=0.249 Sum_probs=20.6
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+..|.-+.+++++|||||.- +-+|..+.
T Consensus 27 i~~Ge~~~i~G~nGsGKSTL--l~~i~G~~ 54 (262)
T PRK09984 27 IHHGEMVALLGPSGSGKSTL--LRHLSGLI 54 (262)
T ss_pred EcCCcEEEEECCCCCCHHHH--HHHHhccC
Confidence 34688899999999999974 34555544
No 398
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=46.67 E-value=16 Score=30.89 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=20.9
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+..|.-+.+++++|||||.- +-+|..+.
T Consensus 26 i~~Ge~~~i~G~nGsGKSTL--l~~i~G~~ 53 (250)
T PRK14247 26 IPDNTITALMGPSGSGKSTL--LRVFNRLI 53 (250)
T ss_pred EcCCCEEEEECCCCCCHHHH--HHHHhccC
Confidence 34677889999999999984 44555554
No 399
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=46.54 E-value=16 Score=29.88 Aligned_cols=28 Identities=21% Similarity=0.276 Sum_probs=20.4
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+..|.-+.+.+++|+|||.- +-+|..+.
T Consensus 23 i~~G~~~~i~G~nGsGKSTL--l~~l~Gl~ 50 (208)
T cd03268 23 VKKGEIYGFLGPNGAGKTTT--MKIILGLI 50 (208)
T ss_pred EcCCcEEEEECCCCCCHHHH--HHHHhCCc
Confidence 34688899999999999984 34454443
No 400
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=46.54 E-value=16 Score=30.46 Aligned_cols=28 Identities=21% Similarity=0.213 Sum_probs=20.5
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+..|.-+.+.+++|||||.. +-+|..+.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTL--l~~l~Gl~ 51 (241)
T cd03256 24 INPGEFVALIGPSGAGKSTL--LRCLNGLV 51 (241)
T ss_pred EcCCCEEEEECCCCCCHHHH--HHHHhCCc
Confidence 34688899999999999983 44555443
No 401
>PHA02774 E1; Provisional
Probab=46.44 E-value=26 Score=34.50 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=20.2
Q ss_pred CcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 174 RECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
..+++.+|+|+|||. |+..++..|.
T Consensus 435 nciv~~GPP~TGKS~-fa~sL~~~L~ 459 (613)
T PHA02774 435 NCLVIYGPPDTGKSM-FCMSLIKFLK 459 (613)
T ss_pred cEEEEECCCCCCHHH-HHHHHHHHhC
Confidence 369999999999998 5567777763
No 402
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=46.31 E-value=25 Score=31.01 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=18.6
Q ss_pred cCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 172 SDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
.+.-+.+.+++|+|||.. +.-+...+.
T Consensus 33 ~~~~i~i~G~~G~GKttl-~~~l~~~~~ 59 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTL-LEALGMELR 59 (300)
T ss_pred CceEEEEECCCCCCHHHH-HHHHHHHHH
Confidence 456788899999999973 334444443
No 403
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=46.29 E-value=16 Score=29.91 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=20.7
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+..|.-+.+.+++|||||.- +-+|..+.
T Consensus 22 i~~Ge~~~l~G~nGsGKSTL--l~~l~G~~ 49 (213)
T cd03235 22 VKPGEFLAIVGPNGAGKSTL--LKAILGLL 49 (213)
T ss_pred EcCCCEEEEECCCCCCHHHH--HHHHcCCC
Confidence 34677889999999999984 34555554
No 404
>PLN03188 kinesin-12 family protein; Provisional
Probab=46.22 E-value=9.4 Score=40.44 Aligned_cols=23 Identities=39% Similarity=0.479 Sum_probs=18.2
Q ss_pred hhHhcCC--cEEEEcCCCchhHHHh
Q 028267 168 PVLLSDR--ECFACAPTGSGKTLAF 190 (211)
Q Consensus 168 p~il~G~--dvi~~A~TGsGKTlaf 190 (211)
..++.|. .|++.++||||||.+.
T Consensus 159 ~svLdGyNaTIFAYGQTGSGKTYTM 183 (1320)
T PLN03188 159 ENCLAGFNSSVFAYGQTGSGKTYTM 183 (1320)
T ss_pred HHHhcCCcceeecCCCCCCCCCEee
Confidence 3457886 4888999999999765
No 405
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=46.15 E-value=15 Score=30.18 Aligned_cols=29 Identities=21% Similarity=0.156 Sum_probs=21.4
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
+..|.-+.+++++|||||.- +-+|..+..
T Consensus 23 i~~Ge~~~i~G~nGsGKSTL--l~~l~Gl~~ 51 (222)
T cd03224 23 VPEGEIVALLGRNGAGKTTL--LKTIMGLLP 51 (222)
T ss_pred EcCCeEEEEECCCCCCHHHH--HHHHhCCCC
Confidence 34678899999999999984 455665543
No 406
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=46.04 E-value=17 Score=28.97 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=20.3
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
..|.-+.+.+++|+|||. ++-+|..+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSt--Ll~~l~G~~ 52 (173)
T cd03246 26 EPGESLAIIGPSGSGKST--LARLILGLL 52 (173)
T ss_pred CCCCEEEEECCCCCCHHH--HHHHHHhcc
Confidence 467788999999999998 344555554
No 407
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=46.04 E-value=26 Score=35.79 Aligned_cols=17 Identities=35% Similarity=0.599 Sum_probs=14.3
Q ss_pred cEEEEcCCCchhHHHhH
Q 028267 175 ECFACAPTGSGKTLAFL 191 (211)
Q Consensus 175 dvi~~A~TGsGKTlaf~ 191 (211)
++++.++||+|||..-.
T Consensus 490 h~~I~G~tGsGKS~l~~ 506 (852)
T PRK13891 490 HTFMFGPTGAGKSTHLG 506 (852)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 48999999999998643
No 408
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=45.98 E-value=16 Score=30.16 Aligned_cols=27 Identities=22% Similarity=0.258 Sum_probs=20.0
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
+..|.-+.+.+++|+|||.- +=+|..+
T Consensus 34 i~~Ge~~~i~G~nGsGKSTL--l~~i~G~ 60 (214)
T PRK13543 34 VDAGEALLVQGDNGAGKTTL--LRVLAGL 60 (214)
T ss_pred ECCCCEEEEEcCCCCCHHHH--HHHHhCC
Confidence 34688899999999999983 3444444
No 409
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=45.96 E-value=17 Score=29.94 Aligned_cols=28 Identities=14% Similarity=0.366 Sum_probs=20.5
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+..|.-+.+.+++|||||.- +-+|..+.
T Consensus 26 i~~Ge~~~i~G~nGsGKSTL--l~~l~Gl~ 53 (216)
T TIGR00960 26 ITKGEMVFLVGHSGAGKSTF--LKLILGIE 53 (216)
T ss_pred EcCCCEEEEECCCCCCHHHH--HHHHhCCC
Confidence 34677889999999999983 44555543
No 410
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=45.90 E-value=16 Score=29.65 Aligned_cols=28 Identities=29% Similarity=0.345 Sum_probs=20.4
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+..|.-+.+.+++|+|||.-+ -+|..+.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl--~~l~G~~ 50 (198)
T TIGR01189 23 LNAGEALQVTGPNGIGKTTLL--RILAGLL 50 (198)
T ss_pred EcCCcEEEEECCCCCCHHHHH--HHHhCCC
Confidence 346788999999999999744 3454443
No 411
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=45.90 E-value=43 Score=32.91 Aligned_cols=47 Identities=23% Similarity=0.333 Sum_probs=29.1
Q ss_pred CCCCcHHHHHHHhh---Hh-cCCcEEEEcCCCchhHHHhHHHHHHHHhccc
Q 028267 156 YKEPTPIQRQAIPV---LL-SDRECFACAPTGSGKTLAFLCPMLMKLRVLF 202 (211)
Q Consensus 156 ~~~pt~iQ~~aip~---il-~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~ 202 (211)
|...+|-|-.=+-- .| .+-+++.-.|+|||||.+.+--++.+-...|
T Consensus 14 Y~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p 64 (755)
T KOG1131|consen 14 YDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYP 64 (755)
T ss_pred CcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCC
Confidence 34445555443322 22 3456788999999999998766665544444
No 412
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.89 E-value=7 Score=33.81 Aligned_cols=19 Identities=26% Similarity=0.330 Sum_probs=17.2
Q ss_pred CCcEEEEcCCCchhHHHhH
Q 028267 173 DRECFACAPTGSGKTLAFL 191 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf~ 191 (211)
++.|+..++++||||..|.
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~ 56 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFT 56 (238)
T ss_pred CCcEEEEecCCCCceeeee
Confidence 4689999999999999886
No 413
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=45.73 E-value=15 Score=29.86 Aligned_cols=16 Identities=31% Similarity=0.337 Sum_probs=13.0
Q ss_pred EEEEcCCCchhHHHhH
Q 028267 176 CFACAPTGSGKTLAFL 191 (211)
Q Consensus 176 vi~~A~TGsGKTlaf~ 191 (211)
.++.+++|+|||..+-
T Consensus 25 ~~i~G~NGsGKSnil~ 40 (178)
T cd03239 25 NAIVGPNGSGKSNIVD 40 (178)
T ss_pred EEEECCCCCCHHHHHH
Confidence 5579999999998643
No 414
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=45.69 E-value=16 Score=29.81 Aligned_cols=28 Identities=25% Similarity=0.331 Sum_probs=20.3
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+..|.-+.+.+++|+|||.- +-+|..+.
T Consensus 24 i~~G~~~~l~G~nGsGKSTL--l~~l~G~~ 51 (211)
T cd03225 24 IKKGEFVLIVGPNGSGKSTL--LRLLNGLL 51 (211)
T ss_pred EcCCcEEEEECCCCCCHHHH--HHHHhcCC
Confidence 34577788999999999983 44555543
No 415
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=45.66 E-value=17 Score=29.64 Aligned_cols=22 Identities=18% Similarity=0.072 Sum_probs=17.4
Q ss_pred hcCCcEEEEcCCCchhHHHhHH
Q 028267 171 LSDRECFACAPTGSGKTLAFLC 192 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~l 192 (211)
-.|.=+.+.+++|+|||.-+-+
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~ 40 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNE 40 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHH
Confidence 3467788999999999976543
No 416
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=45.63 E-value=16 Score=30.19 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=20.5
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+..|.-+.+.+++|||||.- +-+|..+.
T Consensus 27 i~~G~~~~i~G~nGsGKSTL--l~~l~Gl~ 54 (220)
T cd03293 27 VEEGEFVALVGPSGCGKSTL--LRIIAGLE 54 (220)
T ss_pred EeCCcEEEEECCCCCCHHHH--HHHHhCCC
Confidence 34677788999999999984 34455544
No 417
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=45.57 E-value=18 Score=36.03 Aligned_cols=47 Identities=13% Similarity=0.196 Sum_probs=29.9
Q ss_pred CHHHHHHHHHcCCC----CCcHHHHHHHhhHhc-C--CcEEEEcCCCchhHHHh
Q 028267 144 ESYLLRNLAELGYK----EPTPIQRQAIPVLLS-D--RECFACAPTGSGKTLAF 190 (211)
Q Consensus 144 ~~~ll~~l~~~g~~----~pt~iQ~~aip~il~-G--~dvi~~A~TGsGKTlaf 190 (211)
.+..++........ |++.|=..|+-.++. + .-||+.+.+|+|||-+-
T Consensus 50 ~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~~QsIiiSGESGaGKTes~ 103 (691)
T cd01380 50 GEEIIQAYSGQRKGELDPHIFAIAEEAYKQMTRDEKNQSIIVSGESGAGKTVSA 103 (691)
T ss_pred CHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 45555555443332 234455666665553 3 46999999999999984
No 418
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=45.52 E-value=17 Score=30.29 Aligned_cols=29 Identities=21% Similarity=0.416 Sum_probs=21.3
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
+..|.-+.+++++|||||.- +-+|..+..
T Consensus 24 i~~Ge~~~l~G~nGsGKSTL--l~~i~Gl~~ 52 (236)
T cd03253 24 IPAGKKVAIVGPSGSGKSTI--LRLLFRFYD 52 (236)
T ss_pred EcCCCEEEEECCCCCCHHHH--HHHHhcccC
Confidence 45688899999999999973 445555543
No 419
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=45.46 E-value=17 Score=30.44 Aligned_cols=28 Identities=21% Similarity=0.328 Sum_probs=20.5
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+..|.-+.+.+++|||||.- +-+|..+.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTL--l~~l~G~~ 51 (236)
T TIGR03864 24 VRPGEFVALLGPNGAGKSTL--FSLLTRLY 51 (236)
T ss_pred EcCCCEEEEECCCCCCHHHH--HHHHhCCc
Confidence 34688899999999999984 34455443
No 420
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=45.44 E-value=18 Score=29.05 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=20.1
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+..|.-+.+.+++|+|||.- +-+|..+.
T Consensus 23 i~~G~~~~i~G~nGsGKSTL--l~~l~G~~ 50 (178)
T cd03229 23 IEAGEIVALLGPSGSGKSTL--LRCIAGLE 50 (178)
T ss_pred EcCCCEEEEECCCCCCHHHH--HHHHhCCC
Confidence 34677788999999999984 34444443
No 421
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=45.42 E-value=16 Score=32.01 Aligned_cols=19 Identities=21% Similarity=0.221 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCchhHHHhH
Q 028267 173 DRECFACAPTGSGKTLAFL 191 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf~ 191 (211)
++=+++++++|+|||.+..
T Consensus 72 ~~vi~l~G~~G~GKTTt~a 90 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIA 90 (272)
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 3557788999999997644
No 422
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=45.25 E-value=26 Score=33.37 Aligned_cols=21 Identities=33% Similarity=0.343 Sum_probs=17.6
Q ss_pred hcCCcEEEEcCCCchhHHHhH
Q 028267 171 LSDRECFACAPTGSGKTLAFL 191 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~ 191 (211)
-.+..|++.+.+||||++..-
T Consensus 208 ~~~~pVlI~Ge~GtGK~~~A~ 228 (509)
T PRK05022 208 ASDLNVLILGETGVGKELVAR 228 (509)
T ss_pred CCCCcEEEECCCCccHHHHHH
Confidence 456789999999999998663
No 423
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=45.24 E-value=17 Score=29.47 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=20.4
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
..|.-+.+++++|+|||.- +-+|..+.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTL--l~~l~G~~ 50 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSL--LRMIAGIM 50 (195)
T ss_pred cCCcEEEEECCCCCCHHHH--HHHHhcCC
Confidence 4677789999999999984 45555553
No 424
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=45.03 E-value=16 Score=30.21 Aligned_cols=18 Identities=28% Similarity=0.290 Sum_probs=14.5
Q ss_pred CCcEEEEcCCCchhHHHhH
Q 028267 173 DRECFACAPTGSGKTLAFL 191 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf~ 191 (211)
| =+++++++|+|||..+-
T Consensus 23 g-~~~i~G~nGsGKStll~ 40 (197)
T cd03278 23 G-LTAIVGPNGSGKSNIID 40 (197)
T ss_pred C-cEEEECCCCCCHHHHHH
Confidence 5 57789999999997643
No 425
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=45.03 E-value=11 Score=35.85 Aligned_cols=17 Identities=35% Similarity=0.598 Sum_probs=15.5
Q ss_pred CcEEEEcCCCchhHHHh
Q 028267 174 RECFACAPTGSGKTLAF 190 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf 190 (211)
|+++.-+|+|+|||++.
T Consensus 385 RNilfyGPPGTGKTm~A 401 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFA 401 (630)
T ss_pred hheeeeCCCCCCchHHH
Confidence 68999999999999964
No 426
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=44.93 E-value=18 Score=29.68 Aligned_cols=29 Identities=17% Similarity=0.303 Sum_probs=21.4
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
+..|.-+.+.+++|+|||.- +-+|..+..
T Consensus 21 i~~Ge~~~l~G~nGsGKSTL--l~~l~gl~~ 49 (211)
T cd03298 21 FAQGEITAIVGPSGSGKSTL--LNLIAGFET 49 (211)
T ss_pred EcCCCEEEEECCCCCCHHHH--HHHHhCCCC
Confidence 45688899999999999984 455555543
No 427
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=44.86 E-value=14 Score=33.41 Aligned_cols=17 Identities=35% Similarity=0.647 Sum_probs=15.3
Q ss_pred CcEEEEcCCCchhHHHh
Q 028267 174 RECFACAPTGSGKTLAF 190 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf 190 (211)
+.+++-+|+||||||+.
T Consensus 212 kgvllygppgtgktl~a 228 (435)
T KOG0729|consen 212 KGVLLYGPPGTGKTLCA 228 (435)
T ss_pred CceEEeCCCCCchhHHH
Confidence 56999999999999975
No 428
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=44.83 E-value=18 Score=29.54 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=20.9
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+-.|.-+.+.+++|+|||..+ -+|..+.
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl--~~i~G~~ 51 (200)
T PRK13540 24 LPAGGLLHLKGSNGAGKTTLL--KLIAGLL 51 (200)
T ss_pred ECCCCEEEEECCCCCCHHHHH--HHHhcCC
Confidence 346888999999999999854 3455554
No 429
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=44.83 E-value=17 Score=29.88 Aligned_cols=27 Identities=22% Similarity=0.171 Sum_probs=20.0
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
..|.-+.+.+++|||||.- +-+|..+.
T Consensus 29 ~~G~~~~i~G~nGsGKSTL--l~~i~G~~ 55 (221)
T TIGR02211 29 GKGEIVAIVGSSGSGKSTL--LHLLGGLD 55 (221)
T ss_pred cCCcEEEEECCCCCCHHHH--HHHHhCCC
Confidence 4577788999999999984 44455443
No 430
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=44.76 E-value=17 Score=34.87 Aligned_cols=19 Identities=32% Similarity=0.289 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCchhHHHhH
Q 028267 173 DRECFACAPTGSGKTLAFL 191 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf~ 191 (211)
|.=++.+++||+|||.+..
T Consensus 256 g~Vi~LvGpnGvGKTTTia 274 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTA 274 (484)
T ss_pred CcEEEEECCCCccHHHHHH
Confidence 4558889999999998765
No 431
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=44.74 E-value=18 Score=29.80 Aligned_cols=28 Identities=21% Similarity=0.095 Sum_probs=20.8
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+..|.-+.+++++|||||. ++=+|..+.
T Consensus 25 i~~Ge~~~i~G~nGsGKST--Ll~~l~Gl~ 52 (220)
T cd03263 25 VYKGEIFGLLGHNGAGKTT--TLKMLTGEL 52 (220)
T ss_pred EcCCcEEEEECCCCCCHHH--HHHHHhCCC
Confidence 3467778999999999997 445555554
No 432
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=44.71 E-value=18 Score=30.51 Aligned_cols=28 Identities=18% Similarity=0.399 Sum_probs=21.0
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+..|.-+.+.+++|+|||.-+ -+|..+.
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl--~~i~Gl~ 53 (250)
T PRK14262 26 IFKNQITAIIGPSGCGKTTLL--RSINRMN 53 (250)
T ss_pred ecCCCEEEEECCCCCCHHHHH--HHHhccc
Confidence 346888999999999999844 4555553
No 433
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=44.67 E-value=18 Score=29.88 Aligned_cols=27 Identities=30% Similarity=0.305 Sum_probs=20.1
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
..|.-+.+.+++|+|||.-+ =+|..+.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl--~~i~G~~ 50 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTTI--KMLTTLL 50 (220)
T ss_pred CCCCEEEEECCCCCCHHHHH--HHHhCCC
Confidence 46777889999999999844 4555543
No 434
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=44.60 E-value=18 Score=29.50 Aligned_cols=28 Identities=25% Similarity=0.262 Sum_probs=20.7
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+..|.-+.+.+++|+|||.- +-+|..+.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTL--l~~l~Gl~ 50 (205)
T cd03226 23 LYAGEIIALTGKNGAGKTTL--AKILAGLI 50 (205)
T ss_pred EcCCCEEEEECCCCCCHHHH--HHHHhcCC
Confidence 34688899999999999974 34555544
No 435
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=44.45 E-value=18 Score=29.58 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=20.7
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+..|.-+.+.+++|||||. ++-+|..+.
T Consensus 23 i~~G~~~~i~G~nGsGKST--Ll~~l~G~~ 50 (210)
T cd03269 23 VEKGEIFGLLGPNGAGKTT--TIRMILGII 50 (210)
T ss_pred EcCCcEEEEECCCCCCHHH--HHHHHhCCC
Confidence 3467778899999999997 445555543
No 436
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=44.39 E-value=18 Score=28.62 Aligned_cols=28 Identities=18% Similarity=0.191 Sum_probs=20.9
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+..|.-+.+.+++|+|||.-+ -+|..+.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl--~~i~G~~ 50 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLM--KILSGLY 50 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHH--HHHhCCC
Confidence 346788889999999999844 4555554
No 437
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=44.37 E-value=24 Score=30.04 Aligned_cols=31 Identities=29% Similarity=0.258 Sum_probs=24.4
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHhccc
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLRVLF 202 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~ 202 (211)
+..|.=+++.+++|+|||- +|-||.-|.+..
T Consensus 25 l~~Ge~~~i~G~NG~GKTt--LLRilaGLl~p~ 55 (209)
T COG4133 25 LNAGEALQITGPNGAGKTT--LLRILAGLLRPD 55 (209)
T ss_pred EcCCCEEEEECCCCCcHHH--HHHHHHcccCCC
Confidence 4567779999999999998 667777776543
No 438
>PRK09165 replicative DNA helicase; Provisional
Probab=44.32 E-value=22 Score=33.96 Aligned_cols=24 Identities=13% Similarity=0.111 Sum_probs=16.9
Q ss_pred CcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 174 RECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
.=+|+.|+||+|||. |++-+...+
T Consensus 218 ~livIaarpg~GKT~-~al~ia~~~ 241 (497)
T PRK09165 218 DLIILAGRPSMGKTA-LATNIAFNA 241 (497)
T ss_pred ceEEEEeCCCCChHH-HHHHHHHHH
Confidence 347789999999997 444444444
No 439
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=44.31 E-value=17 Score=32.72 Aligned_cols=19 Identities=21% Similarity=0.146 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCchhHHHhH
Q 028267 173 DRECFACAPTGSGKTLAFL 191 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf~ 191 (211)
|.=+++++++|+|||....
T Consensus 114 ~~vi~lvGpnGsGKTTt~~ 132 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIG 132 (318)
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 4567889999999997543
No 440
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=44.28 E-value=57 Score=33.95 Aligned_cols=43 Identities=16% Similarity=0.050 Sum_probs=32.1
Q ss_pred CCcHHHHHHHhhHhcC--CcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 158 EPTPIQRQAIPVLLSD--RECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 158 ~pt~iQ~~aip~il~G--~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
.|.|+|....-.++.. .-+|+.-..|.|||.-..+-+-+.+..
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~ 196 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT 196 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc
Confidence 4899999987666533 358888999999999886555555444
No 441
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=44.23 E-value=37 Score=33.64 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=16.9
Q ss_pred HhcCCcEEEEcCCCchhHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf 190 (211)
+..++.+++.+++|+|||..-
T Consensus 47 ~~~~~~~l~~G~~G~GKttla 67 (637)
T PRK13765 47 AKQRRHVMMIGSPGTGKSMLA 67 (637)
T ss_pred HHhCCeEEEECCCCCcHHHHH
Confidence 345678999999999999643
No 442
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=44.22 E-value=18 Score=30.00 Aligned_cols=28 Identities=25% Similarity=0.280 Sum_probs=20.3
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+..|.-+.+.+++|||||.- +-+|..+.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTL--l~~l~Gl~ 50 (232)
T cd03218 23 VKQGEIVGLLGPNGAGKTTT--FYMIVGLV 50 (232)
T ss_pred ecCCcEEEEECCCCCCHHHH--HHHHhCCC
Confidence 34577788999999999983 44555543
No 443
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=44.21 E-value=27 Score=31.87 Aligned_cols=19 Identities=26% Similarity=0.118 Sum_probs=14.2
Q ss_pred cEEEEcCCCchhHHHhHHHH
Q 028267 175 ECFACAPTGSGKTLAFLCPM 194 (211)
Q Consensus 175 dvi~~A~TGsGKTlaf~lPi 194 (211)
=+.+++++|||||. |++-+
T Consensus 128 ItEI~G~~GsGKTq-l~lql 146 (344)
T PLN03187 128 ITEAFGEFRSGKTQ-LAHTL 146 (344)
T ss_pred EEEEecCCCCChhH-HHHHH
Confidence 36689999999997 44443
No 444
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=44.12 E-value=18 Score=29.47 Aligned_cols=28 Identities=25% Similarity=0.278 Sum_probs=21.0
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+..|.-+.+.+++|+|||. ++-+|..+.
T Consensus 32 i~~Ge~~~l~G~nGsGKSt--Ll~~i~Gl~ 59 (194)
T cd03213 32 AKPGELTAIMGPSGAGKST--LLNALAGRR 59 (194)
T ss_pred EcCCcEEEEECCCCCCHHH--HHHHHhCCC
Confidence 3467889999999999997 445555554
No 445
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=44.07 E-value=18 Score=29.66 Aligned_cols=27 Identities=30% Similarity=0.277 Sum_probs=20.0
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
..|.-+.+.+++|||||.- +=+|..+.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTL--l~~l~Gl~ 55 (218)
T cd03266 29 KPGEVTGLLGPNGAGKTTT--LRMLAGLL 55 (218)
T ss_pred cCCcEEEEECCCCCCHHHH--HHHHhCCc
Confidence 4577788999999999974 34555543
No 446
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=43.99 E-value=18 Score=30.28 Aligned_cols=27 Identities=33% Similarity=0.394 Sum_probs=20.2
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
..|.-+.+.+++|+|||. ++-+|..+.
T Consensus 26 ~~Ge~~~i~G~nGsGKST--Ll~~l~Gl~ 52 (239)
T cd03296 26 PSGELVALLGPSGSGKTT--LLRLIAGLE 52 (239)
T ss_pred cCCCEEEEECCCCCCHHH--HHHHHhCCC
Confidence 457778899999999998 344555554
No 447
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=43.91 E-value=19 Score=35.84 Aligned_cols=46 Identities=13% Similarity=0.204 Sum_probs=29.3
Q ss_pred HHHHHHHHHcCCC----CCcHHHHHHHhhHhc-C--CcEEEEcCCCchhHHHh
Q 028267 145 SYLLRNLAELGYK----EPTPIQRQAIPVLLS-D--RECFACAPTGSGKTLAF 190 (211)
Q Consensus 145 ~~ll~~l~~~g~~----~pt~iQ~~aip~il~-G--~dvi~~A~TGsGKTlaf 190 (211)
+.+++........ |++.|=..|+-.++. + .-||+.+.+|+|||-+-
T Consensus 53 ~~~~~~y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 105 (674)
T cd01384 53 VHMMEQYKGAALGELSPHVFAIADAAYRAMINEGKSQSILVSGESGAGKTETT 105 (674)
T ss_pred HHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHHcCCCceEEEECCCCCCchhHH
Confidence 4455544433322 334466666666653 3 46999999999999884
No 448
>PRK06696 uridine kinase; Validated
Probab=43.81 E-value=14 Score=30.91 Aligned_cols=14 Identities=36% Similarity=0.133 Sum_probs=12.6
Q ss_pred EEEEcCCCchhHHH
Q 028267 176 CFACAPTGSGKTLA 189 (211)
Q Consensus 176 vi~~A~TGsGKTla 189 (211)
|.+++++|||||..
T Consensus 25 I~I~G~sgsGKSTl 38 (223)
T PRK06696 25 VAIDGITASGKTTF 38 (223)
T ss_pred EEEECCCCCCHHHH
Confidence 88999999999974
No 449
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=43.70 E-value=18 Score=30.54 Aligned_cols=28 Identities=25% Similarity=0.164 Sum_probs=21.2
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+..|.-+.+.+++|||||. ++-+|..+.
T Consensus 26 i~~Ge~~~i~G~nGsGKST--Ll~~l~G~~ 53 (253)
T TIGR02323 26 LYPGEVLGIVGESGSGKST--LLGCLAGRL 53 (253)
T ss_pred EeCCcEEEEECCCCCCHHH--HHHHHhCCC
Confidence 3468889999999999998 345555554
No 450
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=43.61 E-value=14 Score=36.21 Aligned_cols=17 Identities=35% Similarity=0.624 Sum_probs=15.1
Q ss_pred CcEEEEcCCCchhHHHh
Q 028267 174 RECFACAPTGSGKTLAF 190 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf 190 (211)
+.|+..+|+||||||-.
T Consensus 338 KGVLLvGPPGTGKTlLA 354 (752)
T KOG0734|consen 338 KGVLLVGPPGTGKTLLA 354 (752)
T ss_pred CceEEeCCCCCchhHHH
Confidence 58999999999999853
No 451
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=43.61 E-value=18 Score=36.02 Aligned_cols=47 Identities=19% Similarity=0.125 Sum_probs=29.6
Q ss_pred CHHHHHHHHHcC-C----CCCcHHHHHHHhhHhcC---CcEEEEcCCCchhHHHh
Q 028267 144 ESYLLRNLAELG-Y----KEPTPIQRQAIPVLLSD---RECFACAPTGSGKTLAF 190 (211)
Q Consensus 144 ~~~ll~~l~~~g-~----~~pt~iQ~~aip~il~G---~dvi~~A~TGsGKTlaf 190 (211)
.+..++...... . -+++.|=..|+..++.. .-||+.+.+|+|||-+-
T Consensus 57 ~~~~~~~Y~~~~~~~~lpPHiy~iA~~Ay~~m~~~~~~QsIiisGESGAGKTet~ 111 (692)
T cd01385 57 NPKYVRLYENQQRLGKLPPHIFAIADVAYYNMLRKKVNQCIVISGESGSGKTEST 111 (692)
T ss_pred CHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 345555554433 1 22334556666666543 46999999999999884
No 452
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=43.58 E-value=19 Score=30.10 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=20.9
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+..|.-+.+.+++|+|||. ++-+|..+.
T Consensus 23 i~~Ge~~~l~G~nGsGKST--Ll~~l~G~~ 50 (235)
T cd03261 23 VRRGEILAIIGPSGSGKST--LLRLIVGLL 50 (235)
T ss_pred EcCCCEEEEECCCCCCHHH--HHHHHhCCC
Confidence 4468889999999999997 345555554
No 453
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=43.55 E-value=26 Score=34.60 Aligned_cols=55 Identities=16% Similarity=0.242 Sum_probs=32.3
Q ss_pred CHHHHHHHHHcCCCC----CcHHHHHHHhhHhc-C--CcEEEEcCCCchhHHH--hHHHHHHHH
Q 028267 144 ESYLLRNLAELGYKE----PTPIQRQAIPVLLS-D--RECFACAPTGSGKTLA--FLCPMLMKL 198 (211)
Q Consensus 144 ~~~ll~~l~~~g~~~----pt~iQ~~aip~il~-G--~dvi~~A~TGsGKTla--f~lPil~~l 198 (211)
++..+.......... ++.|=..|+-.++. + .-||+++.+|||||-+ +++--|..+
T Consensus 49 ~~~~~~~y~~~~~~~~~PHif~~a~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~k~il~~L~~~ 112 (689)
T PF00063_consen 49 SDEVMEKYRGKRRQDLPPHIFAVAQRAYRQMLRTRQNQSIIISGESGSGKTETSKLILRYLASL 112 (689)
T ss_dssp SHHHHHHHTTS-GGGS-SSHHHHHHHHHHHHHHHTSEEEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhccccccCccchhhhcccccccccccccceeeccccccccccchHHHHHHHhhh
Confidence 345555554433222 23455666666553 3 4599999999999988 444444443
No 454
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=43.55 E-value=19 Score=29.59 Aligned_cols=28 Identities=29% Similarity=0.379 Sum_probs=20.8
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+-.|.-+.+.+++|+|||.- +-+|..+.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTL--l~~l~G~~ 52 (207)
T PRK13539 25 LAAGEALVLTGPNGSGKTTL--LRLIAGLL 52 (207)
T ss_pred EcCCCEEEEECCCCCCHHHH--HHHHhCCC
Confidence 34688899999999999984 44555543
No 455
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=43.51 E-value=19 Score=30.20 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=20.3
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+..|.-+.+.+++|||||.-+ =+|..+.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl--~~l~G~~ 52 (242)
T PRK11124 25 CPQGETLVLLGPSGAGKSSLL--RVLNLLE 52 (242)
T ss_pred EcCCCEEEEECCCCCCHHHHH--HHHhCCC
Confidence 346888999999999999743 4444443
No 456
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=43.32 E-value=14 Score=36.59 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=15.1
Q ss_pred hcCCcEEEEcCCCchhHH
Q 028267 171 LSDRECFACAPTGSGKTL 188 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTl 188 (211)
-...-+|+++.||||||.
T Consensus 64 e~nqvlIviGeTGsGKST 81 (674)
T KOG0922|consen 64 EDNQVLIVIGETGSGKST 81 (674)
T ss_pred HHCCEEEEEcCCCCCccc
Confidence 345669999999999997
No 457
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=43.30 E-value=19 Score=29.63 Aligned_cols=27 Identities=22% Similarity=0.249 Sum_probs=20.3
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
..|.-+.+.+++|+|||. ++-+|..+.
T Consensus 29 ~~Ge~~~i~G~nGsGKST--Ll~~l~G~~ 55 (228)
T cd03257 29 KKGETLGLVGESGSGKST--LARAILGLL 55 (228)
T ss_pred cCCCEEEEECCCCCCHHH--HHHHHhCCC
Confidence 468889999999999997 345555543
No 458
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=43.28 E-value=19 Score=30.39 Aligned_cols=28 Identities=11% Similarity=0.196 Sum_probs=20.7
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+..|.-+.+++++|||||.- +-+|..+.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTL--l~~l~Gl~ 52 (246)
T PRK14269 25 IEQNKITALIGASGCGKSTF--LRCFNRMN 52 (246)
T ss_pred EcCCCEEEEECCCCCCHHHH--HHHHhccc
Confidence 34678899999999999973 44555543
No 459
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=43.27 E-value=19 Score=30.31 Aligned_cols=21 Identities=24% Similarity=0.175 Sum_probs=17.4
Q ss_pred hcCCcEEEEcCCCchhHHHhH
Q 028267 171 LSDRECFACAPTGSGKTLAFL 191 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~ 191 (211)
..|.-+.+++++|||||..+-
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~ 51 (252)
T CHL00131 31 NKGEIHAIMGPNGSGKSTLSK 51 (252)
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 467788899999999998554
No 460
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=43.23 E-value=19 Score=30.46 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=20.2
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
+..|.-+.+.+++|+|||.- +-+|..+
T Consensus 29 i~~Ge~~~i~G~nGsGKSTL--l~~l~Gl 55 (253)
T PRK14242 29 FEQNQVTALIGPSGCGKSTF--LRCLNRM 55 (253)
T ss_pred EeCCCEEEEECCCCCCHHHH--HHHHHhh
Confidence 34677789999999999983 4455554
No 461
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=43.14 E-value=28 Score=30.85 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=18.0
Q ss_pred CcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 174 RECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
.++++.+|+|+|||.+. -=|.++..
T Consensus 138 lntLiigpP~~GKTTlL--RdiaR~~s 162 (308)
T COG3854 138 LNTLIIGPPQVGKTTLL--RDIARLLS 162 (308)
T ss_pred eeeEEecCCCCChHHHH--HHHHHHhh
Confidence 36899999999999853 44444443
No 462
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=43.11 E-value=18 Score=35.36 Aligned_cols=23 Identities=39% Similarity=0.609 Sum_probs=18.3
Q ss_pred hHhcCCc--EEEEcCCCchhHHHhH
Q 028267 169 VLLSDRE--CFACAPTGSGKTLAFL 191 (211)
Q Consensus 169 ~il~G~d--vi~~A~TGsGKTlaf~ 191 (211)
-++.|.| |++-+.||||||.+-+
T Consensus 80 svl~GyNgtvFaYGQTGsGKTyTM~ 104 (574)
T KOG4280|consen 80 SVLEGYNGTVFAYGQTGSGKTYTMI 104 (574)
T ss_pred HHhcccCceEEEeccCCCCCceEee
Confidence 3577864 8999999999997654
No 463
>PHA02624 large T antigen; Provisional
Probab=43.10 E-value=29 Score=34.43 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=20.2
Q ss_pred CcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 174 RECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
+-++..+|.|||||. |+..++..|
T Consensus 432 ~~il~~GPpnTGKTt-f~~sLl~~L 455 (647)
T PHA02624 432 RYWLFKGPVNSGKTT-LAAALLDLC 455 (647)
T ss_pred eEEEEECCCCCCHHH-HHHHHHHHc
Confidence 578899999999997 777777776
No 464
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=43.06 E-value=19 Score=30.17 Aligned_cols=28 Identities=25% Similarity=0.245 Sum_probs=20.9
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+..|.-+.+.+++|+|||. ++-+|..+.
T Consensus 26 i~~Ge~~~l~G~nGsGKST--Ll~~l~G~~ 53 (241)
T PRK10895 26 VNSGEIVGLLGPNGAGKTT--TFYMVVGIV 53 (241)
T ss_pred EcCCcEEEEECCCCCCHHH--HHHHHhCCC
Confidence 3468889999999999998 345555543
No 465
>PLN02200 adenylate kinase family protein
Probab=43.01 E-value=15 Score=31.46 Aligned_cols=16 Identities=31% Similarity=0.297 Sum_probs=13.8
Q ss_pred CcEEEEcCCCchhHHH
Q 028267 174 RECFACAPTGSGKTLA 189 (211)
Q Consensus 174 ~dvi~~A~TGsGKTla 189 (211)
.-+++++++|||||..
T Consensus 44 ~ii~I~G~PGSGKsT~ 59 (234)
T PLN02200 44 FITFVLGGPGSGKGTQ 59 (234)
T ss_pred EEEEEECCCCCCHHHH
Confidence 4688999999999974
No 466
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=42.94 E-value=20 Score=29.82 Aligned_cols=29 Identities=24% Similarity=0.180 Sum_probs=21.8
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
+..|.-+.+.+++|||||.- +-+|..+..
T Consensus 23 i~~Ge~~~l~G~nGsGKSTL--l~~l~G~~~ 51 (230)
T TIGR03410 23 VPKGEVTCVLGRNGVGKTTL--LKTLMGLLP 51 (230)
T ss_pred ECCCCEEEEECCCCCCHHHH--HHHHhCCCC
Confidence 44688899999999999974 445665543
No 467
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=42.89 E-value=19 Score=30.30 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=19.6
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
..|.-+.+.+++|+|||.- +-+|..+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTL--l~~l~Gl 54 (252)
T PRK14239 29 YPNEITALIGPSGSGKSTL--LRSINRM 54 (252)
T ss_pred cCCcEEEEECCCCCCHHHH--HHHHhcc
Confidence 4677799999999999984 4455544
No 468
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=42.77 E-value=21 Score=35.83 Aligned_cols=31 Identities=19% Similarity=0.208 Sum_probs=23.2
Q ss_pred cHHHHHHHhhHhc-C--CcEEEEcCCCchhHHHh
Q 028267 160 TPIQRQAIPVLLS-D--RECFACAPTGSGKTLAF 190 (211)
Q Consensus 160 t~iQ~~aip~il~-G--~dvi~~A~TGsGKTlaf 190 (211)
+.|=..|+-.++. + .-||+.+.+|+|||-+.
T Consensus 75 faiA~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 108 (717)
T cd01382 75 FAIADKAYRDMKVLKMSQSIIVSGESGAGKTENT 108 (717)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEecCCCCChhHHH
Confidence 4466666766653 3 46999999999999874
No 469
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=42.77 E-value=44 Score=31.97 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=18.4
Q ss_pred HhcCCcEEEEcCCCchhHHHhHH
Q 028267 170 LLSDRECFACAPTGSGKTLAFLC 192 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~l 192 (211)
...+..|++.+.|||||++..-.
T Consensus 224 A~~~~pvlI~GE~GtGK~~lA~a 246 (520)
T PRK10820 224 AMLDAPLLITGDTGTGKDLLAYA 246 (520)
T ss_pred hCCCCCEEEECCCCccHHHHHHH
Confidence 44567899999999999986543
No 470
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=42.66 E-value=20 Score=29.64 Aligned_cols=28 Identities=18% Similarity=0.183 Sum_probs=20.7
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+..|.-+.+.+++|+|||.- +=+|..+.
T Consensus 31 i~~Ge~~~l~G~nGsGKSTL--l~~i~G~~ 58 (224)
T TIGR02324 31 VNAGECVALSGPSGAGKSTL--LKSLYANY 58 (224)
T ss_pred ECCCCEEEEECCCCCCHHHH--HHHHhCCC
Confidence 34678899999999999984 34555554
No 471
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=42.55 E-value=19 Score=31.22 Aligned_cols=28 Identities=18% Similarity=0.141 Sum_probs=20.8
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+..|.-+.+++++|||||..+ -+|..+.
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl--~~l~Gl~ 57 (279)
T PRK13650 30 VKQGEWLSIIGHNGSGKSTTV--RLIDGLL 57 (279)
T ss_pred EeCCCEEEEECCCCCCHHHHH--HHHhcCC
Confidence 346788999999999999854 3555543
No 472
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=42.52 E-value=20 Score=30.01 Aligned_cols=27 Identities=19% Similarity=0.081 Sum_probs=19.5
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
+..|.-+.+++++|||||.- +-+|..+
T Consensus 28 i~~Ge~~~i~G~nGsGKSTL--l~~l~G~ 54 (237)
T PRK11614 28 INQGEIVTLIGANGAGKTTL--LGTLCGD 54 (237)
T ss_pred EcCCcEEEEECCCCCCHHHH--HHHHcCC
Confidence 34677888999999999973 3344444
No 473
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=42.50 E-value=19 Score=32.30 Aligned_cols=28 Identities=21% Similarity=0.332 Sum_probs=20.0
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+..|.-+.+++++|||||.-+ -+|..+.
T Consensus 105 I~~Ge~v~IvG~~GsGKSTLl--~~L~g~~ 132 (329)
T PRK14257 105 IKRNKVTAFIGPSGCGKSTFL--RNLNQLN 132 (329)
T ss_pred EcCCCEEEEECCCCCCHHHHH--HHHhccc
Confidence 345777999999999999743 4444444
No 474
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=42.47 E-value=20 Score=29.91 Aligned_cols=27 Identities=19% Similarity=0.206 Sum_probs=20.6
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
+..|.-+.+.+++|||||.- +=+|..+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTL--l~~l~Gl 49 (243)
T TIGR01978 23 VKKGEIHAIMGPNGSGKSTL--SKTIAGH 49 (243)
T ss_pred EcCCCEEEEECCCCCCHHHH--HHHHhCC
Confidence 34688899999999999984 4455555
No 475
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=42.36 E-value=20 Score=31.08 Aligned_cols=16 Identities=31% Similarity=0.395 Sum_probs=13.7
Q ss_pred cEEEEcCCCchhHHHh
Q 028267 175 ECFACAPTGSGKTLAF 190 (211)
Q Consensus 175 dvi~~A~TGsGKTlaf 190 (211)
++|..+|+|+|||.-.
T Consensus 52 h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLA 67 (233)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred eEEEECCCccchhHHH
Confidence 5899999999998643
No 476
>PRK12678 transcription termination factor Rho; Provisional
Probab=42.31 E-value=28 Score=34.53 Aligned_cols=30 Identities=13% Similarity=0.160 Sum_probs=22.5
Q ss_pred cCCcEEEEcCCCchhHHHhHHHHHHHHhccc
Q 028267 172 SDRECFACAPTGSGKTLAFLCPMLMKLRVLF 202 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~ 202 (211)
.|.-.+++|+.|+|||... .-|+..+..+.
T Consensus 415 kGQR~LIvgpp~aGKTtLL-~~IAn~i~~n~ 444 (672)
T PRK12678 415 KGQRGLIVSPPKAGKTTIL-QNIANAITTNN 444 (672)
T ss_pred cCCEeEEeCCCCCCHHHHH-HHHHHHHhhcC
Confidence 5677888999999999865 44776665543
No 477
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=42.25 E-value=21 Score=29.61 Aligned_cols=28 Identities=29% Similarity=0.459 Sum_probs=20.2
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+..|.-+.+.+++|+|||.- +=+|..+.
T Consensus 26 i~~G~~~~i~G~nGsGKSTL--l~~l~G~~ 53 (229)
T cd03254 26 IKPGETVAIVGPTGAGKTTL--INLLMRFY 53 (229)
T ss_pred EcCCCEEEEECCCCCCHHHH--HHHHhcCc
Confidence 34677789999999999984 34444443
No 478
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=42.24 E-value=20 Score=30.13 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=19.3
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
..|.-+.+.+++|+|||.-+ -+|..+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl--~~l~G~ 52 (250)
T PRK11264 27 KPGEVVAIIGPSGSGKTTLL--RCINLL 52 (250)
T ss_pred cCCCEEEEECCCCCCHHHHH--HHHhcC
Confidence 45777889999999999844 344444
No 479
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=42.14 E-value=21 Score=29.19 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=18.6
Q ss_pred cCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 172 SDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
.| -+.+.+++|||||.- +-+|..+.
T Consensus 25 ~g-~~~i~G~nGsGKSTL--l~~l~Gl~ 49 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTL--MRILATLT 49 (211)
T ss_pred CC-cEEEECCCCCCHHHH--HHHHhCCC
Confidence 46 688999999999984 44555543
No 480
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=41.93 E-value=22 Score=28.29 Aligned_cols=28 Identities=21% Similarity=0.340 Sum_probs=20.4
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+..|.-+.+.+++|+|||.- +-+|..+.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTL--l~~l~G~~ 51 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSL--FRALAGLW 51 (166)
T ss_pred ECCCCEEEEECCCCCCHHHH--HHHHhcCC
Confidence 34677889999999999984 34455443
No 481
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=41.87 E-value=36 Score=30.31 Aligned_cols=15 Identities=13% Similarity=0.102 Sum_probs=12.0
Q ss_pred EEEEcCCCchhHHHh
Q 028267 176 CFACAPTGSGKTLAF 190 (211)
Q Consensus 176 vi~~A~TGsGKTlaf 190 (211)
|-+++++|||||...
T Consensus 65 IGIaG~~GSGKSTla 79 (290)
T TIGR00554 65 ISIAGSVAVGKSTTA 79 (290)
T ss_pred EEEECCCCCCHHHHH
Confidence 446899999999854
No 482
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=41.79 E-value=21 Score=29.91 Aligned_cols=28 Identities=25% Similarity=0.334 Sum_probs=20.5
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+..|.-+.+.+++|+|||.- +-+|..+.
T Consensus 24 i~~Ge~~~l~G~nGsGKSTL--l~~l~G~~ 51 (240)
T PRK09493 24 IDQGEVVVIIGPSGSGKSTL--LRCINKLE 51 (240)
T ss_pred EcCCcEEEEECCCCCCHHHH--HHHHhCCC
Confidence 34688889999999999973 34555543
No 483
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=41.64 E-value=21 Score=31.14 Aligned_cols=27 Identities=22% Similarity=0.186 Sum_probs=20.2
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
..|.-+.+.+++|||||..+ -+|..+.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl--~~L~Gl~ 57 (286)
T PRK13646 31 EQGKYYAIVGQTGSGKSTLI--QNINALL 57 (286)
T ss_pred cCCCEEEEECCCCCCHHHHH--HHHhcCC
Confidence 45778999999999999843 4555544
No 484
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=41.57 E-value=20 Score=29.81 Aligned_cols=28 Identities=25% Similarity=0.178 Sum_probs=20.6
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+..|.-+.+++++|||||. ++-+|..+.
T Consensus 30 i~~Ge~~~l~G~nGsGKST--Llk~l~G~~ 57 (226)
T cd03234 30 VESGQVMAILGSSGSGKTT--LLDAISGRV 57 (226)
T ss_pred EcCCeEEEEECCCCCCHHH--HHHHHhCcc
Confidence 3468889999999999996 334555544
No 485
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=41.54 E-value=18 Score=35.92 Aligned_cols=46 Identities=15% Similarity=0.127 Sum_probs=28.4
Q ss_pred HHHHHHHHHcCCCC----CcHHHHHHHhhHhcC---CcEEEEcCCCchhHHHh
Q 028267 145 SYLLRNLAELGYKE----PTPIQRQAIPVLLSD---RECFACAPTGSGKTLAF 190 (211)
Q Consensus 145 ~~ll~~l~~~g~~~----pt~iQ~~aip~il~G---~dvi~~A~TGsGKTlaf 190 (211)
+..++......... ++.|=..|+-.++.. ..||+.+.+|+|||-+-
T Consensus 51 ~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 103 (671)
T cd01381 51 ADEIKLYKNKSIGELPPHIFAISDNAYTNMQREKKNQCIIISGESGAGKTEST 103 (671)
T ss_pred HHHHHHHhcCCccccCCCHHHHHHHHHHHHHHcCCCceEEEEcCCCCCeehHH
Confidence 44555444333222 333555566555542 56999999999999874
No 486
>PRK13342 recombination factor protein RarA; Reviewed
Probab=41.51 E-value=21 Score=32.99 Aligned_cols=17 Identities=29% Similarity=0.426 Sum_probs=14.3
Q ss_pred CcEEEEcCCCchhHHHh
Q 028267 174 RECFACAPTGSGKTLAF 190 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf 190 (211)
..+++.+++|+|||...
T Consensus 37 ~~ilL~GppGtGKTtLA 53 (413)
T PRK13342 37 SSMILWGPPGTGKTTLA 53 (413)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 36899999999999754
No 487
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=41.46 E-value=21 Score=30.59 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=20.0
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
..|.-+.+++++|||||.-+ =+|..+.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl--~~i~G~~ 57 (265)
T PRK10253 31 PDGHFTAIIGPNGCGKSTLL--RTLSRLM 57 (265)
T ss_pred CCCCEEEEECCCCCCHHHHH--HHHcCCC
Confidence 46777899999999999844 4554443
No 488
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=41.45 E-value=18 Score=31.31 Aligned_cols=16 Identities=38% Similarity=0.553 Sum_probs=13.9
Q ss_pred cEEEEcCCCchhHHHh
Q 028267 175 ECFACAPTGSGKTLAF 190 (211)
Q Consensus 175 dvi~~A~TGsGKTlaf 190 (211)
.+++.+++|+|||.+.
T Consensus 40 ~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 40 HLLFAGPPGTGKTTAA 55 (319)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4899999999999754
No 489
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=41.42 E-value=21 Score=30.52 Aligned_cols=28 Identities=29% Similarity=0.370 Sum_probs=20.9
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+..|.-+.+.+++|+|||. ++-+|..+.
T Consensus 24 i~~Ge~~~i~G~nGsGKST--Ll~~l~Gl~ 51 (255)
T PRK11248 24 LESGELLVVLGPSGCGKTT--LLNLIAGFV 51 (255)
T ss_pred ECCCCEEEEECCCCCCHHH--HHHHHhCCC
Confidence 3468889999999999997 345555554
No 490
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=41.38 E-value=22 Score=28.60 Aligned_cols=29 Identities=24% Similarity=0.245 Sum_probs=21.1
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
+..|.-+.+.+++|+|||. ++=+|..+..
T Consensus 23 i~~G~~~~i~G~nGsGKST--Ll~~l~G~~~ 51 (182)
T cd03215 23 VRAGEIVGIAGLVGNGQTE--LAEALFGLRP 51 (182)
T ss_pred EcCCcEEEEECCCCCCHHH--HHHHHhCCCC
Confidence 3467778999999999998 3455555543
No 491
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=41.36 E-value=21 Score=30.64 Aligned_cols=27 Identities=15% Similarity=0.236 Sum_probs=20.2
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
..|.-+.+.+++|+|||.- +=+|..+.
T Consensus 33 ~~Ge~~~I~G~nGsGKSTL--l~~i~Gl~ 59 (269)
T PRK13648 33 PKGQWTSIVGHNGSGKSTI--AKLMIGIE 59 (269)
T ss_pred cCCCEEEEECCCCCCHHHH--HHHHhcCC
Confidence 4677888999999999984 34555543
No 492
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=41.29 E-value=21 Score=30.71 Aligned_cols=20 Identities=25% Similarity=0.436 Sum_probs=16.8
Q ss_pred hcCCcEEEEcCCCchhHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf 190 (211)
-.|.-+++.++||||||--+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTL~ 47 (235)
T COG1122 28 EKGERVLLIGPNGSGKSTLL 47 (235)
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 45778999999999999844
No 493
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=41.26 E-value=22 Score=29.72 Aligned_cols=29 Identities=17% Similarity=0.319 Sum_probs=21.4
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
+..|.-+.+++++|||||. ++-+|..+..
T Consensus 22 i~~Ge~~~l~G~nGsGKST--Ll~~l~Gl~~ 50 (232)
T PRK10771 22 VERGERVAILGPSGAGKST--LLNLIAGFLT 50 (232)
T ss_pred EcCCCEEEEECCCCCCHHH--HHHHHhCCCC
Confidence 4468889999999999997 3445555543
No 494
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=41.24 E-value=19 Score=29.79 Aligned_cols=17 Identities=24% Similarity=0.292 Sum_probs=14.3
Q ss_pred cEEEEcCCCchhHHHhH
Q 028267 175 ECFACAPTGSGKTLAFL 191 (211)
Q Consensus 175 dvi~~A~TGsGKTlaf~ 191 (211)
=+++.+++|+|||..+-
T Consensus 24 ~~~i~G~NGsGKTTLl~ 40 (204)
T cd03240 24 LTLIVGQNGAGKTTIIE 40 (204)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 57889999999997654
No 495
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=41.24 E-value=22 Score=30.06 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=19.7
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
..|.-+.+.+++|||||. ++-+|..+
T Consensus 29 ~~Ge~~~l~G~nGsGKST--Ll~~l~Gl 54 (252)
T PRK14255 29 NQNEITALIGPSGCGKST--YLRTLNRM 54 (252)
T ss_pred cCCCEEEEECCCCCCHHH--HHHHHhcc
Confidence 467779999999999997 34555544
No 496
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=41.22 E-value=20 Score=30.25 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=20.3
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
..|.-+.+.+++|+|||.-+ -+|..+.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl--~~l~Gl~ 55 (255)
T PRK11300 29 REQEIVSLIGPNGAGKTTVF--NCLTGFY 55 (255)
T ss_pred cCCeEEEEECCCCCCHHHHH--HHHhCCc
Confidence 46788889999999999843 4555543
No 497
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=41.15 E-value=22 Score=35.32 Aligned_cols=47 Identities=15% Similarity=0.176 Sum_probs=28.9
Q ss_pred CHHHHHHHHHcCCC----CCcHHHHHHHhhHhc-C--CcEEEEcCCCchhHHHh
Q 028267 144 ESYLLRNLAELGYK----EPTPIQRQAIPVLLS-D--RECFACAPTGSGKTLAF 190 (211)
Q Consensus 144 ~~~ll~~l~~~g~~----~pt~iQ~~aip~il~-G--~dvi~~A~TGsGKTlaf 190 (211)
++..++........ +++.|=..|+-.++. + .-||+.+.+|+|||-+-
T Consensus 56 ~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T smart00242 56 TDEVIKKYRGKSRGELPPHVFAIADNAYRNMLNDKENQSIIISGESGAGKTENT 109 (677)
T ss_pred CHHHHHHccCCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEecCCCCcchHHH
Confidence 34455544443332 233455566655554 3 46999999999999884
No 498
>PRK03846 adenylylsulfate kinase; Provisional
Probab=41.14 E-value=39 Score=27.61 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=14.9
Q ss_pred hcCCcEEEEcCCCchhHH
Q 028267 171 LSDRECFACAPTGSGKTL 188 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTl 188 (211)
..|.-+++++.+|||||.
T Consensus 22 ~~~~~i~i~G~~GsGKST 39 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKST 39 (198)
T ss_pred CCCEEEEEECCCCCCHHH
Confidence 356668889999999986
No 499
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair]
Probab=41.14 E-value=36 Score=35.77 Aligned_cols=42 Identities=29% Similarity=0.285 Sum_probs=31.4
Q ss_pred CCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 156 YKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 156 ~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
+-.-||-|..+|-.-..-.++++++|+|+|||-.-+ -||.-+
T Consensus 736 ~v~ft~~qveai~sg~qpgltmvvgppgtgktd~av-qil~~l 777 (1320)
T KOG1806|consen 736 QVKFTPTQVEAILSGMQPGLTMVVGPPGTGKTDVAV-QILSVL 777 (1320)
T ss_pred hhccCHHHHHHHHhcCCCCceeeecCCCCCCcchhh-hhhhhh
Confidence 344578888887666666799999999999998764 444444
No 500
>CHL00176 ftsH cell division protein; Validated
Probab=41.13 E-value=18 Score=35.84 Aligned_cols=16 Identities=38% Similarity=0.711 Sum_probs=14.4
Q ss_pred CcEEEEcCCCchhHHH
Q 028267 174 RECFACAPTGSGKTLA 189 (211)
Q Consensus 174 ~dvi~~A~TGsGKTla 189 (211)
+.+++.+|+|||||+.
T Consensus 217 ~gVLL~GPpGTGKT~L 232 (638)
T CHL00176 217 KGVLLVGPPGTGKTLL 232 (638)
T ss_pred ceEEEECCCCCCHHHH
Confidence 4699999999999985
Done!