Query 028267
Match_columns 211
No_of_seqs 224 out of 1695
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 14:26:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028267.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028267hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fmo_B ATP-dependent RNA helic 99.8 5E-20 1.7E-24 160.6 7.9 110 100-210 57-168 (300)
2 3dkp_A Probable ATP-dependent 99.8 2.3E-19 7.7E-24 150.0 10.8 91 111-201 4-94 (245)
3 3fe2_A Probable ATP-dependent 99.8 1.3E-18 4.5E-23 145.8 11.2 89 109-201 6-94 (242)
4 2db3_A ATP-dependent RNA helic 99.7 6.8E-18 2.3E-22 153.2 11.8 81 118-202 42-122 (434)
5 2i4i_A ATP-dependent RNA helic 99.7 1E-16 3.5E-21 142.0 11.1 79 119-201 2-80 (417)
6 3iuy_A Probable ATP-dependent 99.7 2.1E-16 7.2E-21 130.6 9.8 74 124-200 11-84 (228)
7 3fmp_B ATP-dependent RNA helic 99.7 6.7E-17 2.3E-21 147.4 7.1 97 110-210 67-168 (479)
8 3bor_A Human initiation factor 99.7 2E-16 6.9E-21 132.2 9.1 83 122-208 20-102 (237)
9 2oxc_A Probable ATP-dependent 99.6 4.1E-16 1.4E-20 129.6 9.5 80 124-207 16-95 (230)
10 1qde_A EIF4A, translation init 99.6 6.1E-16 2.1E-20 127.0 10.1 82 124-209 6-87 (224)
11 1wrb_A DJVLGB; RNA helicase, D 99.6 1.4E-16 4.7E-21 133.9 6.0 80 118-201 7-88 (253)
12 1q0u_A Bstdead; DEAD protein, 99.6 9.6E-16 3.3E-20 126.1 9.0 70 131-204 3-72 (219)
13 1vec_A ATP-dependent RNA helic 99.6 1.7E-15 5.7E-20 122.7 9.0 67 133-203 4-70 (206)
14 1t6n_A Probable ATP-dependent 99.6 1.6E-15 5.5E-20 124.4 9.0 71 129-203 11-81 (220)
15 3ber_A Probable ATP-dependent 99.6 1.8E-15 6.2E-20 127.9 9.3 76 131-210 42-117 (249)
16 2pl3_A Probable ATP-dependent 99.6 2.7E-15 9.1E-20 124.5 9.0 69 128-200 21-89 (236)
17 3fht_A ATP-dependent RNA helic 99.6 2.7E-15 9.3E-20 132.1 8.4 89 117-209 7-100 (412)
18 2j0s_A ATP-dependent RNA helic 99.6 9.3E-15 3.2E-19 129.5 9.7 81 124-208 29-109 (410)
19 2gxq_A Heat resistant RNA depe 99.6 1.1E-14 3.8E-19 117.7 9.3 64 133-200 2-65 (207)
20 3ly5_A ATP-dependent RNA helic 99.5 1.1E-14 3.8E-19 123.9 7.6 59 143-201 61-119 (262)
21 3pey_A ATP-dependent RNA helic 99.5 4.5E-14 1.5E-18 123.2 9.1 75 131-209 4-80 (395)
22 3eiq_A Eukaryotic initiation f 99.5 5.5E-14 1.9E-18 124.0 9.7 83 123-209 31-113 (414)
23 1fuu_A Yeast initiation factor 99.5 5.8E-14 2E-18 122.9 9.0 79 126-208 15-93 (394)
24 1s2m_A Putative ATP-dependent 99.5 7E-14 2.4E-18 123.3 9.1 71 130-204 19-89 (400)
25 3sqw_A ATP-dependent RNA helic 99.5 9.2E-14 3.1E-18 130.2 9.8 75 128-202 13-89 (579)
26 1xti_A Probable ATP-dependent 99.5 1.2E-13 4E-18 121.1 9.2 72 133-208 9-80 (391)
27 3i5x_A ATP-dependent RNA helic 99.5 1.4E-13 4.7E-18 127.7 9.8 74 129-202 65-140 (563)
28 1hv8_A Putative ATP-dependent 99.4 4.1E-13 1.4E-17 116.0 8.4 70 132-205 6-76 (367)
29 2z0m_A 337AA long hypothetical 99.3 9.3E-12 3.2E-16 106.4 9.1 55 143-197 1-55 (337)
30 1oyw_A RECQ helicase, ATP-depe 99.2 1E-11 3.5E-16 115.7 5.5 61 133-197 3-64 (523)
31 2zj8_A DNA helicase, putative 99.2 3.7E-11 1.3E-15 115.3 8.3 64 133-200 2-66 (720)
32 2va8_A SSO2462, SKI2-type heli 99.2 5.4E-11 1.8E-15 113.8 8.8 65 132-200 8-73 (715)
33 2v1x_A ATP-dependent DNA helic 99.1 3.3E-11 1.1E-15 114.2 6.6 66 129-196 16-82 (591)
34 3fho_A ATP-dependent RNA helic 99.1 1.1E-11 3.7E-16 114.7 2.6 69 142-210 125-195 (508)
35 2p6r_A Afuhel308 helicase; pro 99.1 2.6E-11 8.9E-16 116.0 4.4 64 133-200 2-67 (702)
36 3l9o_A ATP-dependent RNA helic 99.1 2.4E-11 8.1E-16 122.6 3.8 59 142-200 168-226 (1108)
37 3oiy_A Reverse gyrase helicase 99.0 3.6E-10 1.2E-14 100.7 6.9 51 147-198 10-61 (414)
38 2ykg_A Probable ATP-dependent 99.0 5E-10 1.7E-14 106.1 6.7 55 148-202 3-57 (696)
39 4a2p_A RIG-I, retinoic acid in 98.9 1.6E-09 5.6E-14 98.8 6.3 49 154-202 3-51 (556)
40 1tf5_A Preprotein translocase 98.9 2E-09 7E-14 105.5 7.2 44 152-198 78-121 (844)
41 3b6e_A Interferon-induced heli 98.8 3.9E-09 1.3E-13 84.9 6.3 50 152-201 27-76 (216)
42 4a2q_A RIG-I, retinoic acid in 98.8 5.2E-09 1.8E-13 101.6 6.9 50 153-202 243-292 (797)
43 4f92_B U5 small nuclear ribonu 98.8 3.6E-09 1.2E-13 110.9 5.9 67 142-208 910-977 (1724)
44 4ddu_A Reverse gyrase; topoiso 98.7 1.4E-08 5E-13 102.4 8.0 45 153-198 74-118 (1104)
45 1gku_B Reverse gyrase, TOP-RG; 98.7 1.2E-08 4E-13 102.5 6.3 46 152-200 52-97 (1054)
46 2whx_A Serine protease/ntpase/ 98.7 7.3E-10 2.5E-14 105.6 -2.7 58 142-200 156-213 (618)
47 3llm_A ATP-dependent RNA helic 98.7 2.2E-08 7.6E-13 83.2 6.3 59 144-202 47-105 (235)
48 4a2w_A RIG-I, retinoic acid in 98.6 2.4E-08 8.3E-13 99.0 5.5 51 152-202 242-292 (936)
49 4f92_B U5 small nuclear ribonu 98.6 1.4E-08 4.9E-13 106.3 4.0 48 155-202 76-124 (1724)
50 2fsf_A Preprotein translocase 98.6 2.9E-08 9.9E-13 97.4 5.6 44 153-199 70-113 (853)
51 1nkt_A Preprotein translocase 98.6 4.4E-08 1.5E-12 96.6 6.6 45 152-199 106-150 (922)
52 2ipc_A Preprotein translocase 98.6 6.8E-08 2.3E-12 95.5 7.1 45 152-199 74-118 (997)
53 4gl2_A Interferon-induced heli 98.6 4.2E-08 1.5E-12 92.8 5.1 45 158-202 7-51 (699)
54 1gm5_A RECG; helicase, replica 98.6 8.4E-08 2.9E-12 93.8 7.3 53 147-200 358-416 (780)
55 2wv9_A Flavivirin protease NS2 98.5 5.1E-09 1.8E-13 100.8 -1.9 51 150-200 202-268 (673)
56 2xgj_A ATP-dependent RNA helic 98.4 2.3E-07 7.7E-12 93.0 6.5 49 151-200 80-128 (1010)
57 2xau_A PRE-mRNA-splicing facto 98.4 3.2E-07 1.1E-11 89.4 6.2 61 130-197 70-131 (773)
58 4a4z_A Antiviral helicase SKI2 98.4 3.6E-07 1.2E-11 91.4 6.2 47 153-200 35-81 (997)
59 2oca_A DAR protein, ATP-depend 98.3 2.9E-07 1E-11 84.0 3.9 45 156-200 111-155 (510)
60 2fwr_A DNA repair protein RAD2 98.3 1.3E-06 4.5E-11 78.9 8.0 40 158-197 93-132 (472)
61 2vl7_A XPD; helicase, unknown 98.3 4.7E-07 1.6E-11 84.5 4.8 43 154-197 4-50 (540)
62 1rif_A DAR protein, DNA helica 98.3 5.4E-07 1.8E-11 76.5 4.1 44 157-200 112-155 (282)
63 1wp9_A ATP-dependent RNA helic 98.2 1.4E-06 4.6E-11 76.7 6.4 41 158-199 9-49 (494)
64 2eyq_A TRCF, transcription-rep 98.2 3.6E-06 1.2E-10 85.3 8.8 58 142-200 587-651 (1151)
65 2fz4_A DNA repair protein RAD2 98.2 3.3E-06 1.1E-10 70.6 7.2 40 157-196 92-131 (237)
66 4a15_A XPD helicase, ATP-depen 97.9 7.5E-06 2.6E-10 77.9 4.9 33 168-200 17-49 (620)
67 3h1t_A Type I site-specific re 97.8 2.2E-05 7.7E-10 73.1 5.7 44 157-201 177-225 (590)
68 3crv_A XPD/RAD3 related DNA he 97.7 1.8E-05 6.3E-10 73.8 4.5 32 166-197 15-46 (551)
69 2w00_A HSDR, R.ECOR124I; ATP-b 97.7 4E-05 1.4E-09 77.1 5.9 57 145-202 251-328 (1038)
70 3o8b_A HCV NS3 protease/helica 97.4 1.5E-05 5.2E-10 76.6 -0.6 37 160-196 219-255 (666)
71 1w36_D RECD, exodeoxyribonucle 97.4 0.00039 1.3E-08 65.8 8.0 40 160-199 151-192 (608)
72 1z63_A Helicase of the SNF2/RA 97.0 0.0011 3.8E-08 60.0 6.7 44 157-201 36-83 (500)
73 3rc3_A ATP-dependent RNA helic 96.9 0.00053 1.8E-08 66.0 3.9 35 163-201 145-179 (677)
74 3jux_A Protein translocase sub 96.3 0.0055 1.9E-07 59.9 6.2 43 153-198 71-113 (822)
75 3dmq_A RNA polymerase-associat 96.2 0.0054 1.8E-07 61.0 5.9 45 157-201 152-198 (968)
76 3mwy_W Chromo domain-containin 95.2 0.023 8E-07 55.1 5.9 42 157-198 235-280 (800)
77 2gk6_A Regulator of nonsense t 95.0 0.044 1.5E-06 51.7 7.1 53 156-209 178-230 (624)
78 3upu_A ATP-dependent DNA helic 94.7 0.041 1.4E-06 49.8 5.9 51 151-202 18-73 (459)
79 4b3f_X DNA-binding protein smu 94.2 0.075 2.6E-06 50.2 6.6 41 158-199 189-230 (646)
80 2xzl_A ATP-dependent helicase 94.0 0.078 2.7E-06 51.8 6.5 44 156-200 358-401 (802)
81 2wjy_A Regulator of nonsense t 93.9 0.1 3.5E-06 51.0 7.1 53 156-209 354-406 (800)
82 3lfu_A DNA helicase II; SF1 he 93.6 0.083 2.8E-06 49.1 5.6 51 157-209 8-59 (647)
83 1z3i_X Similar to RAD54-like; 93.5 0.083 2.8E-06 50.0 5.5 44 158-201 55-107 (644)
84 3u4q_A ATP-dependent helicase/ 93.3 0.09 3.1E-06 53.5 5.6 51 158-210 10-63 (1232)
85 3e1s_A Exodeoxyribonuclease V, 92.8 0.16 5.3E-06 47.8 6.1 42 158-200 189-230 (574)
86 1pjr_A PCRA; DNA repair, DNA r 91.3 0.3 1E-05 46.7 6.3 52 157-210 10-62 (724)
87 3ec2_A DNA replication protein 90.2 0.33 1.1E-05 37.5 4.6 26 172-198 37-62 (180)
88 3co5_A Putative two-component 88.9 0.28 9.5E-06 36.9 3.1 20 170-189 24-43 (143)
89 3t15_A Ribulose bisphosphate c 88.4 0.11 3.6E-06 44.2 0.5 56 134-198 2-60 (293)
90 3n70_A Transport activator; si 88.2 0.39 1.3E-05 36.1 3.6 21 170-190 21-41 (145)
91 1e9r_A Conjugal transfer prote 88.0 0.3 1E-05 43.3 3.3 31 169-200 49-79 (437)
92 3h4m_A Proteasome-activating n 87.5 0.29 1E-05 40.4 2.7 20 171-190 49-68 (285)
93 2zts_A Putative uncharacterize 86.5 0.56 1.9E-05 37.4 3.8 24 173-197 30-53 (251)
94 1xwi_A SKD1 protein; VPS4B, AA 85.7 1 3.6E-05 38.5 5.3 17 174-190 46-62 (322)
95 1c4o_A DNA nucleotide excision 85.3 0.45 1.5E-05 45.3 3.0 43 154-198 5-52 (664)
96 1u0j_A DNA replication protein 84.3 1.7 5.9E-05 37.0 6.0 47 146-196 74-126 (267)
97 4b4t_M 26S protease regulatory 84.2 0.45 1.5E-05 43.3 2.4 55 129-190 175-232 (434)
98 2oap_1 GSPE-2, type II secreti 83.8 1.2 4E-05 41.2 5.0 41 148-190 236-277 (511)
99 3cf0_A Transitional endoplasmi 83.5 0.43 1.5E-05 40.4 1.8 19 172-190 48-66 (301)
100 3uk6_A RUVB-like 2; hexameric 83.1 0.95 3.2E-05 38.6 3.9 26 173-199 70-95 (368)
101 3hws_A ATP-dependent CLP prote 82.6 1.6 5.6E-05 37.6 5.3 19 172-190 50-68 (363)
102 2w58_A DNAI, primosome compone 82.5 2.3 7.7E-05 33.1 5.6 25 174-199 55-79 (202)
103 3eie_A Vacuolar protein sortin 82.1 1.6 5.6E-05 37.0 5.0 17 174-190 52-68 (322)
104 1ofh_A ATP-dependent HSL prote 81.4 1.7 6E-05 35.7 4.8 19 172-190 49-67 (310)
105 3bh0_A DNAB-like replicative h 81.4 1.1 3.7E-05 38.4 3.6 28 172-200 67-94 (315)
106 1jbk_A CLPB protein; beta barr 81.2 0.74 2.5E-05 34.5 2.2 25 173-198 43-67 (195)
107 3te6_A Regulatory protein SIR3 81.2 0.7 2.4E-05 40.2 2.3 28 172-200 44-71 (318)
108 1lv7_A FTSH; alpha/beta domain 81.1 1.8 6E-05 35.2 4.7 18 173-190 45-62 (257)
109 2r44_A Uncharacterized protein 80.0 1.1 3.8E-05 37.9 3.2 21 169-189 42-62 (331)
110 3nbx_X ATPase RAVA; AAA+ ATPas 80.0 2.1 7.2E-05 39.4 5.2 26 164-189 32-57 (500)
111 2bjv_A PSP operon transcriptio 79.6 1.4 4.7E-05 36.0 3.5 19 171-189 27-45 (265)
112 2q6t_A DNAB replication FORK h 79.4 2.7 9.2E-05 37.6 5.7 28 172-200 199-226 (444)
113 2p65_A Hypothetical protein PF 79.3 0.8 2.7E-05 34.4 1.8 25 173-198 43-67 (187)
114 1d2n_A N-ethylmaleimide-sensit 78.6 0.36 1.2E-05 39.9 -0.4 17 174-190 65-81 (272)
115 3bos_A Putative DNA replicatio 78.1 1.5 5E-05 34.5 3.1 27 172-199 51-77 (242)
116 4b4t_J 26S protease regulatory 77.9 1.2 4.2E-05 40.2 2.9 18 173-190 182-199 (405)
117 2x8a_A Nuclear valosin-contain 77.8 0.64 2.2E-05 39.1 1.0 16 175-190 46-61 (274)
118 2dr3_A UPF0273 protein PH0284; 77.8 1.8 6.1E-05 34.4 3.6 29 170-199 20-48 (247)
119 4b4t_L 26S protease subunit RP 77.1 0.9 3.1E-05 41.3 1.8 18 173-190 215-232 (437)
120 2kjq_A DNAA-related protein; s 77.0 1.2 4.1E-05 33.9 2.2 19 172-190 35-53 (149)
121 1ixz_A ATP-dependent metallopr 76.9 1.1 3.9E-05 36.3 2.2 17 174-190 50-66 (254)
122 3syl_A Protein CBBX; photosynt 76.9 1 3.5E-05 37.4 2.0 18 173-190 67-84 (309)
123 3nwn_A Kinesin-like protein KI 76.7 1.4 4.7E-05 39.1 2.8 24 167-190 97-122 (359)
124 1bg2_A Kinesin; motor protein, 76.5 1.5 5.2E-05 38.2 3.0 23 168-190 71-95 (325)
125 2ius_A DNA translocase FTSK; n 76.5 2.8 9.5E-05 38.9 4.9 27 172-199 166-192 (512)
126 3dc4_A Kinesin-like protein NO 76.3 1.4 4.6E-05 38.9 2.7 23 168-190 88-112 (344)
127 3gbj_A KIF13B protein; kinesin 75.8 3.5 0.00012 36.4 5.2 23 168-190 86-110 (354)
128 4a14_A Kinesin, kinesin-like p 75.7 1.6 5.6E-05 38.3 3.0 24 167-190 76-101 (344)
129 2zan_A Vacuolar protein sortin 75.6 3.2 0.00011 37.2 5.0 18 173-190 167-184 (444)
130 2y65_A Kinesin, kinesin heavy 75.4 1.7 5.7E-05 38.6 3.0 23 168-190 78-102 (365)
131 3t0q_A AGR253WP; kinesin, alph 75.1 2.2 7.4E-05 37.6 3.7 25 166-190 77-103 (349)
132 1goj_A Kinesin, kinesin heavy 75.1 1.7 5.9E-05 38.4 3.0 23 168-190 74-98 (355)
133 1f9v_A Kinesin-like protein KA 75.0 1.9 6.4E-05 38.0 3.2 25 166-190 76-102 (347)
134 2c9o_A RUVB-like 1; hexameric 75.0 2.9 9.8E-05 37.5 4.5 26 172-198 62-87 (456)
135 2h58_A Kinesin-like protein KI 74.9 1.8 6.1E-05 37.9 3.0 25 166-190 72-98 (330)
136 4etp_A Kinesin-like protein KA 74.9 1.9 6.5E-05 38.7 3.3 25 166-190 132-158 (403)
137 3u06_A Protein claret segregat 74.8 1.7 6E-05 39.2 3.0 25 166-190 130-156 (412)
138 2zfi_A Kinesin-like protein KI 74.8 1.8 6.1E-05 38.4 3.0 23 168-190 83-107 (366)
139 2vvg_A Kinesin-2; motor protei 74.6 1.8 6.2E-05 38.2 3.0 23 168-190 83-107 (350)
140 3d8b_A Fidgetin-like protein 1 74.6 3.7 0.00013 35.4 5.0 18 173-190 117-134 (357)
141 3lre_A Kinesin-like protein KI 74.6 1.8 6.1E-05 38.3 3.0 23 168-190 99-123 (355)
142 3b6u_A Kinesin-like protein KI 74.2 1.7 6E-05 38.7 2.8 23 168-190 95-119 (372)
143 3b9p_A CG5977-PA, isoform A; A 74.2 1.4 4.8E-05 36.5 2.1 18 173-190 54-71 (297)
144 3cob_A Kinesin heavy chain-lik 74.0 1.7 5.7E-05 38.7 2.6 25 166-190 71-97 (369)
145 2r62_A Cell division protease 73.9 1.5 5E-05 35.8 2.1 18 173-190 44-61 (268)
146 1xp8_A RECA protein, recombina 73.9 2.3 7.9E-05 37.5 3.5 29 172-201 73-101 (366)
147 1x88_A Kinesin-like protein KI 73.7 1.7 5.8E-05 38.4 2.6 24 167-190 81-106 (359)
148 4b4t_K 26S protease regulatory 73.7 1.3 4.5E-05 40.1 2.0 18 173-190 206-223 (428)
149 2qz4_A Paraplegin; AAA+, SPG7, 73.7 1.5 5.2E-05 35.3 2.2 17 173-189 39-55 (262)
150 3cpe_A Terminase, DNA packagin 73.6 4.9 0.00017 37.4 5.9 45 158-202 163-207 (592)
151 2gza_A Type IV secretion syste 73.5 2 6.8E-05 37.6 3.0 22 169-190 171-192 (361)
152 1p9r_A General secretion pathw 73.5 2.6 8.8E-05 37.9 3.8 26 172-198 166-191 (418)
153 4b4t_H 26S protease regulatory 73.4 1.2 4.2E-05 41.0 1.7 18 173-190 243-260 (467)
154 1t5c_A CENP-E protein, centrom 73.4 1.9 6.5E-05 38.0 2.8 23 168-190 71-95 (349)
155 2wbe_C Bipolar kinesin KRP-130 73.2 1.8 6.1E-05 38.5 2.7 23 168-190 94-118 (373)
156 1tue_A Replication protein E1; 73.1 5.7 0.0002 32.7 5.5 51 146-199 29-83 (212)
157 2nr8_A Kinesin-like protein KI 73.0 2.3 8E-05 37.6 3.4 24 167-190 96-121 (358)
158 2chg_A Replication factor C sm 73.0 1.9 6.5E-05 33.0 2.5 24 174-198 39-62 (226)
159 3bfn_A Kinesin-like protein KI 73.0 2 6.9E-05 38.5 3.0 22 169-190 93-116 (388)
160 2qgz_A Helicase loader, putati 72.9 3 0.0001 35.5 3.9 26 173-199 152-177 (308)
161 2qmh_A HPR kinase/phosphorylas 72.9 1.7 5.7E-05 35.8 2.2 20 171-190 32-52 (205)
162 1v8k_A Kinesin-like protein KI 72.7 2.1 7E-05 38.7 3.0 23 168-190 148-172 (410)
163 1ojl_A Transcriptional regulat 72.7 2.4 8.1E-05 36.0 3.2 20 171-190 23-42 (304)
164 3b85_A Phosphate starvation-in 72.6 3.6 0.00012 33.1 4.2 32 160-191 9-40 (208)
165 3vkg_A Dynein heavy chain, cyt 72.6 3.9 0.00013 45.9 5.5 47 144-191 874-924 (3245)
166 2eyu_A Twitching motility prot 72.5 1.7 5.8E-05 36.4 2.2 21 170-190 22-42 (261)
167 4h1g_A Maltose binding protein 72.1 4.1 0.00014 38.9 5.1 25 166-190 454-480 (715)
168 3vaa_A Shikimate kinase, SK; s 72.0 1.6 5.6E-05 34.2 1.9 18 172-189 24-41 (199)
169 2heh_A KIF2C protein; kinesin, 72.0 2.1 7.2E-05 38.4 2.8 23 168-190 128-152 (387)
170 1iy2_A ATP-dependent metallopr 71.7 1.7 5.9E-05 35.9 2.1 17 174-190 74-90 (278)
171 2rep_A Kinesin-like protein KI 71.2 2.4 8.2E-05 37.8 3.0 25 166-190 107-133 (376)
172 1cr0_A DNA primase/helicase; R 70.7 3.9 0.00013 34.0 4.1 29 170-199 32-60 (296)
173 2owm_A Nckin3-434, related to 70.7 3.3 0.00011 37.7 3.9 23 168-190 130-154 (443)
174 2pt7_A CAG-ALFA; ATPase, prote 70.7 2.2 7.7E-05 36.8 2.6 27 170-198 168-194 (330)
175 2v1u_A Cell division control p 70.2 1.9 6.5E-05 36.5 2.0 26 172-198 43-68 (387)
176 2r6a_A DNAB helicase, replicat 70.1 6.3 0.00021 35.3 5.6 29 171-200 201-229 (454)
177 4b4t_I 26S protease regulatory 69.8 1.8 6.1E-05 39.5 1.9 18 173-190 216-233 (437)
178 1q57_A DNA primase/helicase; d 69.7 4.2 0.00014 36.8 4.4 30 171-201 240-269 (503)
179 4ag6_A VIRB4 ATPase, type IV s 69.4 5.6 0.00019 34.6 5.0 28 171-199 33-60 (392)
180 2iut_A DNA translocase FTSK; n 69.0 5.2 0.00018 37.7 4.9 27 173-200 214-240 (574)
181 1l8q_A Chromosomal replication 68.7 2.5 8.5E-05 35.6 2.4 26 173-199 37-62 (324)
182 3jvv_A Twitching mobility prot 68.6 3.8 0.00013 35.9 3.7 19 172-190 122-140 (356)
183 2o0j_A Terminase, DNA packagin 68.5 8 0.00027 34.4 5.8 43 158-200 163-205 (385)
184 3a8t_A Adenylate isopentenyltr 67.8 2 6.7E-05 37.9 1.6 17 173-189 40-56 (339)
185 2ehv_A Hypothetical protein PH 67.6 4.6 0.00016 32.0 3.8 22 170-191 27-48 (251)
186 3bgw_A DNAB-like replicative h 67.5 3.1 0.00011 37.5 3.0 29 172-201 196-224 (444)
187 2qp9_X Vacuolar protein sortin 67.2 2.6 9E-05 36.5 2.4 18 173-190 84-101 (355)
188 3pfi_A Holliday junction ATP-d 66.6 2.7 9.1E-05 35.4 2.2 17 174-190 56-72 (338)
189 1um8_A ATP-dependent CLP prote 66.2 2.9 0.0001 36.1 2.5 19 172-190 71-89 (376)
190 1njg_A DNA polymerase III subu 66.0 4.7 0.00016 31.0 3.4 15 175-189 47-61 (250)
191 1ry6_A Internal kinesin; kines 65.9 4.1 0.00014 36.0 3.4 19 172-190 82-102 (360)
192 3vfd_A Spastin; ATPase, microt 65.6 2.7 9.2E-05 36.6 2.1 18 173-190 148-165 (389)
193 2ewv_A Twitching motility prot 65.4 2.7 9.2E-05 36.9 2.1 21 170-190 133-153 (372)
194 2w0m_A SSO2452; RECA, SSPF, un 65.2 3.1 0.00011 32.4 2.3 20 170-189 20-39 (235)
195 1u94_A RECA protein, recombina 64.9 5 0.00017 35.1 3.7 29 172-201 62-90 (356)
196 4a1f_A DNAB helicase, replicat 64.5 7 0.00024 34.1 4.6 27 173-200 46-72 (338)
197 1hqc_A RUVB; extended AAA-ATPa 64.4 2.3 8E-05 35.4 1.4 18 173-190 38-55 (324)
198 4fcw_A Chaperone protein CLPB; 63.9 5.8 0.0002 32.7 3.8 17 174-190 48-64 (311)
199 3lda_A DNA repair protein RAD5 63.9 10 0.00035 33.8 5.6 19 173-191 178-196 (400)
200 1g8p_A Magnesium-chelatase 38 63.9 2.2 7.5E-05 35.9 1.2 18 173-190 45-62 (350)
201 1z6g_A Guanylate kinase; struc 63.8 4.4 0.00015 32.4 3.0 21 170-190 20-40 (218)
202 1sxj_D Activator 1 41 kDa subu 63.6 4.9 0.00017 33.7 3.3 17 174-190 59-75 (353)
203 4akg_A Glutathione S-transfera 63.0 5.9 0.0002 43.8 4.5 47 144-191 891-941 (2695)
204 2z4s_A Chromosomal replication 62.2 8.5 0.00029 34.4 4.8 26 173-199 130-155 (440)
205 2z43_A DNA repair and recombin 61.8 5 0.00017 34.2 3.1 26 172-198 106-131 (324)
206 2qby_A CDC6 homolog 1, cell di 61.8 3.8 0.00013 34.5 2.3 26 173-199 45-70 (386)
207 1m7g_A Adenylylsulfate kinase; 61.6 3.9 0.00013 32.2 2.2 30 160-190 13-42 (211)
208 2zr9_A Protein RECA, recombina 61.0 6.1 0.00021 34.4 3.5 28 172-200 60-87 (349)
209 4eun_A Thermoresistant glucoki 60.5 4.5 0.00015 31.5 2.4 19 172-190 28-46 (200)
210 1fnn_A CDC6P, cell division co 59.5 4.2 0.00014 34.5 2.2 23 175-198 46-68 (389)
211 1iqp_A RFCS; clamp loader, ext 59.5 9.6 0.00033 31.3 4.4 16 175-190 48-63 (327)
212 2qby_B CDC6 homolog 3, cell di 59.4 4.1 0.00014 34.6 2.1 25 173-198 45-69 (384)
213 3lnc_A Guanylate kinase, GMP k 59.2 3.2 0.00011 33.2 1.3 21 170-190 24-44 (231)
214 3hr8_A Protein RECA; alpha and 58.9 6.1 0.00021 34.8 3.1 27 173-200 61-87 (356)
215 1n0w_A DNA repair protein RAD5 58.8 4.6 0.00016 31.9 2.2 22 170-191 21-42 (243)
216 1g41_A Heat shock protein HSLU 58.8 11 0.00036 34.3 4.8 18 173-190 50-67 (444)
217 3f9v_A Minichromosome maintena 58.7 5 0.00017 37.6 2.7 15 175-189 329-343 (595)
218 3nwj_A ATSK2; P loop, shikimat 58.5 6.8 0.00023 32.5 3.2 22 169-190 44-65 (250)
219 3kta_A Chromosome segregation 58.1 4.5 0.00015 30.7 1.9 16 175-190 28-43 (182)
220 1rj9_A FTSY, signal recognitio 57.7 11 0.00036 32.2 4.4 19 172-190 101-119 (304)
221 1gvn_B Zeta; postsegregational 56.7 3.8 0.00013 34.5 1.4 17 173-189 33-49 (287)
222 4a74_A DNA repair and recombin 56.5 4.2 0.00014 31.8 1.6 22 169-190 21-42 (231)
223 1f2t_A RAD50 ABC-ATPase; DNA d 56.0 5.5 0.00019 30.1 2.1 15 176-190 26-40 (149)
224 3hu3_A Transitional endoplasmi 55.6 5.2 0.00018 36.6 2.2 18 173-190 238-255 (489)
225 2v9p_A Replication protein E1; 55.6 8 0.00027 33.2 3.3 27 171-199 124-150 (305)
226 3qf7_A RAD50; ABC-ATPase, ATPa 54.8 5.4 0.00018 34.8 2.1 16 175-190 25-40 (365)
227 3pxg_A Negative regulator of g 54.6 7.7 0.00026 34.9 3.2 28 172-200 200-227 (468)
228 4akg_A Glutathione S-transfera 54.2 5.2 0.00018 44.2 2.2 21 170-190 1264-1284(2695)
229 1nlf_A Regulatory protein REPA 53.9 5.7 0.00019 32.7 2.0 23 169-191 26-48 (279)
230 3k1j_A LON protease, ATP-depen 53.8 8 0.00027 36.0 3.2 22 169-190 56-77 (604)
231 3cf2_A TER ATPase, transitiona 53.1 4.9 0.00017 39.3 1.7 52 129-190 471-528 (806)
232 1in4_A RUVB, holliday junction 52.2 7.9 0.00027 33.0 2.7 17 174-190 52-68 (334)
233 1sxj_A Activator 1 95 kDa subu 52.1 6.3 0.00021 35.9 2.1 17 174-190 78-94 (516)
234 1sxj_E Activator 1 40 kDa subu 51.6 8 0.00027 32.5 2.6 16 175-190 38-53 (354)
235 3b9q_A Chloroplast SRP recepto 51.6 12 0.00041 31.8 3.7 20 172-191 99-118 (302)
236 3tif_A Uncharacterized ABC tra 51.6 7.4 0.00025 31.7 2.3 27 171-199 29-55 (235)
237 3auy_A DNA double-strand break 51.0 6.3 0.00022 34.2 1.9 15 176-190 28-42 (371)
238 3uie_A Adenylyl-sulfate kinase 50.8 7.8 0.00027 30.1 2.3 30 159-189 12-41 (200)
239 3m6a_A ATP-dependent protease 50.5 7.4 0.00025 35.8 2.4 19 172-190 107-125 (543)
240 1ko7_A HPR kinase/phosphatase; 50.1 28 0.00097 30.0 5.9 19 173-191 144-163 (314)
241 2ce7_A Cell division protein F 50.0 6.7 0.00023 35.9 2.0 17 174-190 50-66 (476)
242 2bbw_A Adenylate kinase 4, AK4 49.6 6.4 0.00022 31.7 1.6 18 173-190 27-44 (246)
243 2chq_A Replication factor C sm 49.1 7.5 0.00026 31.8 2.0 15 175-189 40-54 (319)
244 1sxj_C Activator 1 40 kDa subu 48.8 12 0.0004 31.7 3.2 16 175-190 48-63 (340)
245 3pxi_A Negative regulator of g 48.5 7.6 0.00026 37.0 2.2 27 172-199 200-226 (758)
246 3c8u_A Fructokinase; YP_612366 48.3 8.2 0.00028 30.2 2.1 19 171-189 20-38 (208)
247 3pvs_A Replication-associated 48.3 9 0.00031 34.5 2.5 17 174-190 51-67 (447)
248 3ice_A Transcription terminati 48.2 28 0.00094 31.6 5.7 31 161-191 159-192 (422)
249 1knx_A Probable HPR(Ser) kinas 47.9 7.6 0.00026 33.7 1.9 21 171-191 145-166 (312)
250 3vkg_A Dynein heavy chain, cyt 47.5 7.6 0.00026 43.6 2.2 20 169-188 1300-1319(3245)
251 2cbz_A Multidrug resistance-as 47.4 9.4 0.00032 31.1 2.3 26 171-198 29-54 (237)
252 3qks_A DNA double-strand break 47.1 8.9 0.0003 30.3 2.1 15 176-190 26-40 (203)
253 3e70_C DPA, signal recognition 47.1 16 0.00056 31.4 4.0 19 172-190 128-146 (328)
254 3pxi_A Negative regulator of g 46.7 13 0.00044 35.4 3.5 16 175-190 523-538 (758)
255 1htw_A HI0065; nucleotide-bind 46.4 14 0.00049 28.2 3.1 27 171-199 31-57 (158)
256 3aez_A Pantothenate kinase; tr 46.1 18 0.00061 30.8 4.0 26 172-199 89-114 (312)
257 1tf7_A KAIC; homohexamer, hexa 46.0 14 0.00049 33.5 3.6 31 170-200 36-66 (525)
258 3qkt_A DNA double-strand break 45.8 9.2 0.00031 32.7 2.1 16 176-191 26-41 (339)
259 1ypw_A Transitional endoplasmi 45.5 7.5 0.00026 37.7 1.6 19 172-190 237-255 (806)
260 1jr3_A DNA polymerase III subu 45.3 9.1 0.00031 32.2 2.0 16 175-190 40-55 (373)
261 1r6b_X CLPA protein; AAA+, N-t 45.3 9.3 0.00032 36.2 2.2 26 172-198 206-231 (758)
262 2ghi_A Transport protein; mult 45.1 11 0.00036 31.3 2.3 27 171-199 44-70 (260)
263 2p5t_B PEZT; postsegregational 44.9 6.6 0.00023 32.0 1.0 17 173-189 32-48 (253)
264 2px0_A Flagellar biosynthesis 44.8 11 0.00039 31.8 2.5 19 172-190 104-122 (296)
265 1r6b_X CLPA protein; AAA+, N-t 44.7 14 0.00048 35.0 3.4 16 175-190 490-505 (758)
266 3nh6_A ATP-binding cassette SU 44.6 11 0.00036 32.4 2.3 27 171-199 78-104 (306)
267 2ff7_A Alpha-hemolysin translo 44.2 11 0.00037 30.9 2.3 27 171-199 33-59 (247)
268 2pze_A Cystic fibrosis transme 44.2 11 0.00038 30.5 2.2 26 171-198 32-57 (229)
269 2yhs_A FTSY, cell division pro 44.1 17 0.00058 33.6 3.7 19 173-191 293-311 (503)
270 2og2_A Putative signal recogni 43.9 18 0.0006 31.8 3.7 20 172-191 156-175 (359)
271 1sgw_A Putative ABC transporte 43.9 12 0.00041 30.2 2.4 26 171-198 33-58 (214)
272 3tqc_A Pantothenate kinase; bi 43.7 21 0.00073 30.7 4.1 23 176-200 95-117 (321)
273 2d7d_A Uvrabc system protein B 43.6 12 0.0004 35.4 2.7 40 158-198 12-56 (661)
274 1rz3_A Hypothetical protein rb 42.6 12 0.00042 29.1 2.3 19 172-190 21-39 (201)
275 3cmw_A Protein RECA, recombina 42.6 17 0.00057 38.6 3.7 29 172-201 1081-1109(1706)
276 2dhr_A FTSH; AAA+ protein, hex 42.4 11 0.00037 34.7 2.1 17 174-190 65-81 (499)
277 1pui_A ENGB, probable GTP-bind 42.1 9 0.00031 29.4 1.3 20 171-190 24-43 (210)
278 1sxj_B Activator 1 37 kDa subu 41.9 11 0.00038 30.8 2.0 15 175-189 44-58 (323)
279 4g1u_C Hemin import ATP-bindin 41.8 12 0.00042 31.1 2.2 27 171-199 35-61 (266)
280 1mv5_A LMRA, multidrug resista 41.8 11 0.00036 30.8 1.8 28 170-199 25-52 (243)
281 3gfo_A Cobalt import ATP-bindi 41.7 12 0.00041 31.4 2.2 27 171-199 32-58 (275)
282 1ji0_A ABC transporter; ATP bi 41.5 13 0.00044 30.3 2.3 27 171-199 30-56 (240)
283 1w5s_A Origin recognition comp 41.4 13 0.00044 31.7 2.4 18 173-190 50-69 (412)
284 1b0u_A Histidine permease; ABC 41.3 13 0.00045 30.8 2.3 27 171-199 30-56 (262)
285 2yz2_A Putative ABC transporte 41.2 13 0.00045 30.8 2.3 27 171-199 31-57 (266)
286 2d2e_A SUFC protein; ABC-ATPas 41.0 13 0.00045 30.4 2.3 26 171-198 27-52 (250)
287 2pcj_A ABC transporter, lipopr 40.9 12 0.00042 30.1 2.0 27 171-199 28-54 (224)
288 1qvr_A CLPB protein; coiled co 40.8 12 0.0004 36.3 2.2 16 175-190 590-605 (854)
289 2ixe_A Antigen peptide transpo 40.7 14 0.00046 30.9 2.3 27 171-199 43-69 (271)
290 1g6h_A High-affinity branched- 40.5 13 0.00046 30.5 2.3 27 171-199 31-57 (257)
291 2zu0_C Probable ATP-dependent 40.5 14 0.00047 30.7 2.3 26 171-198 44-69 (267)
292 2qi9_C Vitamin B12 import ATP- 40.2 14 0.00046 30.5 2.2 27 170-198 23-49 (249)
293 1svm_A Large T antigen; AAA+ f 39.9 21 0.0007 31.5 3.5 18 172-189 168-185 (377)
294 3tlx_A Adenylate kinase 2; str 39.9 11 0.00038 30.5 1.6 18 172-189 28-45 (243)
295 3u61_B DNA polymerase accessor 39.7 11 0.00037 31.4 1.6 15 176-190 51-65 (324)
296 1odf_A YGR205W, hypothetical 3 39.7 11 0.00038 31.8 1.6 15 175-189 33-47 (290)
297 1ypw_A Transitional endoplasmi 39.7 4 0.00014 39.6 -1.3 19 171-189 509-527 (806)
298 2ged_A SR-beta, signal recogni 39.7 14 0.00048 27.7 2.1 17 173-189 48-64 (193)
299 1vpl_A ABC transporter, ATP-bi 39.0 15 0.00051 30.4 2.3 27 171-199 39-65 (256)
300 1lw7_A Transcriptional regulat 38.8 20 0.00068 30.8 3.1 28 170-199 165-194 (365)
301 2olj_A Amino acid ABC transpor 38.6 15 0.00052 30.5 2.3 27 171-199 48-74 (263)
302 2nq2_C Hypothetical ABC transp 38.4 15 0.00052 30.2 2.2 26 171-198 29-54 (253)
303 3cf2_A TER ATPase, transitiona 38.3 12 0.00041 36.6 1.8 17 174-190 239-255 (806)
304 2ihy_A ABC transporter, ATP-bi 38.2 15 0.00052 30.8 2.2 27 171-199 45-71 (279)
305 2qen_A Walker-type ATPase; unk 37.7 19 0.00065 29.6 2.8 17 173-189 31-47 (350)
306 3cmu_A Protein RECA, recombina 37.5 19 0.00066 38.8 3.3 26 173-199 1427-1452(2050)
307 4e22_A Cytidylate kinase; P-lo 37.4 19 0.00065 29.2 2.7 19 172-190 26-44 (252)
308 1lkx_A Myosin IE heavy chain; 36.0 26 0.00089 33.6 3.7 45 145-189 59-110 (697)
309 3umf_A Adenylate kinase; rossm 35.4 14 0.00049 29.9 1.6 17 172-188 28-44 (217)
310 3lxx_A GTPase IMAP family memb 35.3 17 0.00059 28.8 2.1 17 174-190 30-46 (239)
311 3b5x_A Lipid A export ATP-bind 35.0 20 0.00069 33.1 2.7 28 171-200 367-394 (582)
312 2bbs_A Cystic fibrosis transme 34.9 18 0.0006 30.6 2.1 26 171-198 62-87 (290)
313 2onk_A Molybdate/tungstate ABC 34.9 20 0.00069 29.3 2.4 23 176-200 27-49 (240)
314 1svi_A GTP-binding protein YSX 34.6 17 0.00058 27.2 1.8 18 173-190 23-40 (195)
315 2fna_A Conserved hypothetical 34.5 14 0.00049 30.4 1.5 24 174-198 31-54 (357)
316 1oix_A RAS-related protein RAB 34.4 18 0.0006 27.6 1.9 16 175-190 31-46 (191)
317 2jeo_A Uridine-cytidine kinase 34.2 21 0.00073 28.6 2.5 19 172-190 24-42 (245)
318 1v5w_A DMC1, meiotic recombina 33.9 16 0.00056 31.3 1.8 24 173-197 122-145 (343)
319 2i1q_A DNA repair and recombin 33.9 14 0.00049 31.0 1.4 24 173-197 98-121 (322)
320 1vma_A Cell division protein F 33.7 20 0.00067 30.6 2.3 18 173-190 104-121 (306)
321 1qvr_A CLPB protein; coiled co 33.6 15 0.00052 35.6 1.7 25 173-198 191-215 (854)
322 1w7j_A Myosin VA; motor protei 33.6 29 0.001 33.8 3.7 46 145-190 121-173 (795)
323 2pjz_A Hypothetical protein ST 33.5 22 0.00077 29.5 2.5 24 173-198 30-53 (263)
324 3pqc_A Probable GTP-binding pr 33.3 18 0.00063 26.8 1.8 17 174-190 24-40 (195)
325 2zpa_A Uncharacterized protein 33.3 36 0.0012 32.6 4.1 37 158-194 175-213 (671)
326 1e69_A Chromosome segregation 33.2 15 0.00052 31.0 1.4 15 175-189 26-40 (322)
327 3zvl_A Bifunctional polynucleo 33.1 16 0.00055 32.3 1.6 16 175-190 260-275 (416)
328 1kk8_A Myosin heavy chain, str 33.0 30 0.001 33.9 3.7 40 160-199 153-197 (837)
329 2wsm_A Hydrogenase expression/ 33.0 19 0.00064 27.8 1.9 24 174-198 31-54 (221)
330 1uj2_A Uridine-cytidine kinase 32.9 19 0.00066 29.0 2.0 15 175-189 24-38 (252)
331 3dm5_A SRP54, signal recogniti 32.7 39 0.0013 30.6 4.1 26 174-200 101-126 (443)
332 2vhj_A Ntpase P4, P4; non- hyd 32.1 16 0.00054 32.0 1.4 18 172-189 122-139 (331)
333 4anj_A Unconventional myosin-V 32.0 20 0.00067 36.2 2.2 47 144-190 108-161 (1052)
334 4eaq_A DTMP kinase, thymidylat 32.0 16 0.00056 29.4 1.4 18 172-189 25-42 (229)
335 4a82_A Cystic fibrosis transme 32.0 16 0.00055 33.7 1.5 19 171-189 365-383 (578)
336 3gd7_A Fusion complex of cysti 31.9 21 0.0007 31.7 2.1 27 171-199 45-71 (390)
337 1sq5_A Pantothenate kinase; P- 31.5 23 0.00077 29.8 2.3 25 173-199 80-104 (308)
338 2ycu_A Non muscle myosin 2C, a 31.4 32 0.0011 34.4 3.6 56 144-199 110-174 (995)
339 1w9i_A Myosin II heavy chain; 31.1 21 0.00073 34.7 2.2 31 160-190 156-189 (770)
340 3euj_A Chromosome partition pr 31.1 35 0.0012 31.2 3.6 23 176-200 32-54 (483)
341 4db1_A Myosin-7; S1DC, cardiac 31.0 21 0.00072 34.8 2.2 31 160-190 155-188 (783)
342 2v26_A Myosin VI; calmodulin-b 30.8 21 0.00073 34.7 2.2 46 144-189 104-156 (784)
343 1g8x_A Myosin II heavy chain f 30.7 32 0.0011 34.4 3.5 55 144-198 136-199 (1010)
344 2yv5_A YJEQ protein; hydrolase 30.7 30 0.001 29.0 2.9 27 164-190 156-182 (302)
345 2f6r_A COA synthase, bifunctio 30.7 20 0.00068 29.8 1.8 15 175-189 77-91 (281)
346 3cmw_A Protein RECA, recombina 30.6 31 0.001 36.6 3.4 28 172-200 731-758 (1706)
347 3kl4_A SRP54, signal recogniti 30.6 38 0.0013 30.5 3.7 18 173-190 97-114 (433)
348 2o0a_A S.cerevisiae chromosome 30.6 65 0.0022 27.8 5.0 25 170-194 87-114 (298)
349 2o5v_A DNA replication and rep 30.6 22 0.00076 31.1 2.1 16 175-190 28-43 (359)
350 3d31_A Sulfate/molybdate ABC t 30.4 24 0.00083 30.7 2.3 28 171-200 24-51 (348)
351 3fvq_A Fe(3+) IONS import ATP- 30.2 23 0.00079 31.1 2.1 27 171-199 28-54 (359)
352 2oil_A CATX-8, RAS-related pro 30.2 25 0.00085 26.3 2.1 16 175-190 27-42 (193)
353 1w1w_A Structural maintenance 29.7 25 0.00084 30.9 2.3 18 173-190 26-43 (430)
354 4aby_A DNA repair protein RECN 29.2 14 0.00049 31.9 0.6 18 172-190 60-77 (415)
355 3cr8_A Sulfate adenylyltranfer 29.2 61 0.0021 30.0 4.9 48 142-189 329-385 (552)
356 2yyz_A Sugar ABC transporter, 29.0 26 0.00091 30.6 2.3 27 171-199 27-53 (359)
357 2it1_A 362AA long hypothetical 28.7 27 0.00091 30.6 2.3 27 171-199 27-53 (362)
358 2dfs_A Myosin-5A; myosin-V, in 28.7 24 0.00082 35.6 2.2 46 145-190 121-173 (1080)
359 1z47_A CYSA, putative ABC-tran 28.5 27 0.00091 30.6 2.3 27 171-199 39-65 (355)
360 3qf4_A ABC transporter, ATP-bi 28.5 20 0.00068 33.2 1.5 19 172-190 368-386 (587)
361 3cmu_A Protein RECA, recombina 28.5 45 0.0015 36.1 4.2 29 170-198 1078-1106(2050)
362 1oxx_K GLCV, glucose, ABC tran 28.5 24 0.00081 30.8 1.9 27 171-199 29-55 (353)
363 1i84_S Smooth muscle myosin he 28.2 24 0.00084 35.6 2.2 56 144-199 133-197 (1184)
364 2xtp_A GTPase IMAP family memb 28.1 25 0.00085 28.2 1.9 20 172-191 21-40 (260)
365 1g29_1 MALK, maltose transport 27.9 28 0.00095 30.6 2.3 27 171-199 27-53 (372)
366 1pzn_A RAD51, DNA repair and r 27.8 22 0.00075 30.7 1.6 20 172-191 130-149 (349)
367 2hf9_A Probable hydrogenase ni 27.8 28 0.00097 26.9 2.1 24 174-198 39-62 (226)
368 3rlf_A Maltose/maltodextrin im 27.6 29 0.00098 30.8 2.3 28 171-200 27-54 (381)
369 1v43_A Sugar-binding transport 27.2 29 0.001 30.5 2.3 27 171-199 35-61 (372)
370 1qhl_A Protein (cell division 27.0 25 0.00084 28.7 1.6 20 178-199 32-51 (227)
371 3b60_A Lipid A export ATP-bind 26.9 27 0.00094 32.1 2.1 27 171-199 367-393 (582)
372 2gf9_A RAS-related protein RAB 26.7 31 0.0011 25.7 2.1 17 175-191 24-40 (189)
373 2npi_A Protein CLP1; CLP1-PCF1 26.3 33 0.0011 31.0 2.5 20 171-190 136-155 (460)
374 1u0l_A Probable GTPase ENGC; p 26.3 40 0.0014 28.2 2.9 23 166-188 162-184 (301)
375 1zd9_A ADP-ribosylation factor 26.2 32 0.0011 25.8 2.1 20 172-191 21-40 (188)
376 1zu4_A FTSY; GTPase, signal re 26.2 32 0.0011 29.4 2.3 18 173-190 105-122 (320)
377 3v9p_A DTMP kinase, thymidylat 26.1 25 0.00084 28.7 1.5 20 170-189 22-41 (227)
378 2atv_A RERG, RAS-like estrogen 25.9 33 0.0011 25.9 2.1 16 174-189 29-44 (196)
379 3reg_A RHO-like small GTPase; 25.9 33 0.0011 25.7 2.1 24 172-196 22-45 (194)
380 1m2o_B GTP-binding protein SAR 25.8 31 0.001 26.1 1.9 17 174-190 24-40 (190)
381 2p5s_A RAS and EF-hand domain 25.8 33 0.0011 25.9 2.1 16 174-189 29-44 (199)
382 4dhe_A Probable GTP-binding pr 25.7 26 0.00088 26.9 1.5 17 173-189 29-45 (223)
383 2rcn_A Probable GTPase ENGC; Y 25.6 41 0.0014 29.5 2.9 22 167-188 209-230 (358)
384 2fg5_A RAB-22B, RAS-related pr 25.6 31 0.0011 26.0 1.9 22 174-196 24-45 (192)
385 3cbq_A GTP-binding protein REM 25.6 33 0.0011 26.1 2.1 17 174-190 24-40 (195)
386 2qu8_A Putative nucleolar GTP- 25.5 33 0.0011 26.8 2.1 24 166-189 21-45 (228)
387 1jmt_B Splicing factor U2AF 65 25.4 36 0.0012 19.0 1.6 14 154-167 13-26 (28)
388 2qag_B Septin-6, protein NEDD5 25.4 40 0.0014 30.3 2.9 28 162-190 30-59 (427)
389 3qf4_B Uncharacterized ABC tra 25.4 28 0.00095 32.3 1.9 26 172-199 380-405 (598)
390 1p5z_B DCK, deoxycytidine kina 25.3 26 0.00087 28.4 1.4 18 172-189 23-40 (263)
391 1ny5_A Transcriptional regulat 25.3 55 0.0019 28.4 3.7 26 172-199 159-184 (387)
392 2il1_A RAB12; G-protein, GDP, 25.3 34 0.0012 25.8 2.1 17 174-190 27-43 (192)
393 3l0o_A Transcription terminati 24.7 1.3E+02 0.0043 27.3 5.9 42 159-201 158-202 (427)
394 3dz8_A RAS-related protein RAB 24.6 33 0.0011 25.7 1.9 22 175-197 25-46 (191)
395 2o52_A RAS-related protein RAB 24.6 33 0.0011 26.1 1.9 17 174-190 26-42 (200)
396 2b6h_A ADP-ribosylation factor 24.6 33 0.0011 25.9 1.9 17 174-190 30-46 (192)
397 1a5t_A Delta prime, HOLB; zinc 24.5 32 0.0011 29.1 1.9 25 174-199 25-49 (334)
398 3tui_C Methionine import ATP-b 24.4 36 0.0012 30.0 2.3 28 171-200 52-79 (366)
399 2fv8_A H6, RHO-related GTP-bin 24.4 23 0.00078 27.1 0.9 17 174-190 26-42 (207)
400 3oes_A GTPase rhebl1; small GT 23.9 35 0.0012 25.9 1.9 18 172-189 23-40 (201)
401 2qm8_A GTPase/ATPase; G protei 23.9 61 0.0021 27.6 3.7 20 171-190 53-72 (337)
402 2yl4_A ATP-binding cassette SU 23.6 30 0.001 32.0 1.7 27 171-199 368-394 (595)
403 2v3c_C SRP54, signal recogniti 23.6 37 0.0013 30.3 2.3 17 174-190 100-116 (432)
404 3io5_A Recombination and repai 23.5 67 0.0023 28.1 3.8 27 172-200 28-54 (333)
405 2j1l_A RHO-related GTP-binding 23.5 35 0.0012 26.3 1.9 17 174-190 35-51 (214)
406 1gwn_A RHO-related GTP-binding 23.3 36 0.0012 26.3 1.9 16 174-189 29-44 (205)
407 3lv8_A DTMP kinase, thymidylat 23.3 33 0.0011 28.0 1.7 18 172-189 26-43 (236)
408 1f6b_A SAR1; gtpases, N-termin 22.6 33 0.0011 26.2 1.5 17 174-190 26-42 (198)
409 2x77_A ADP-ribosylation factor 22.4 34 0.0012 25.5 1.5 16 175-190 24-39 (189)
410 3j16_B RLI1P; ribosome recycli 22.4 32 0.0011 32.3 1.7 28 170-199 100-127 (608)
411 2ew1_A RAS-related protein RAB 22.2 39 0.0013 26.0 1.9 17 174-190 27-43 (201)
412 1t9h_A YLOQ, probable GTPase E 22.1 26 0.00088 30.0 0.9 21 169-189 169-189 (307)
413 2gco_A H9, RHO-related GTP-bin 21.6 41 0.0014 25.5 1.9 17 174-190 26-42 (201)
414 2f7s_A C25KG, RAS-related prot 21.5 44 0.0015 25.5 2.1 17 174-190 26-42 (217)
415 3ozx_A RNAse L inhibitor; ATP 21.4 30 0.001 31.9 1.2 24 167-190 19-42 (538)
416 1ls1_A Signal recognition part 21.4 46 0.0016 27.9 2.3 18 172-189 97-114 (295)
417 3ec1_A YQEH GTPase; atnos1, at 21.4 70 0.0024 27.6 3.6 19 171-189 160-178 (369)
418 4gzl_A RAS-related C3 botulinu 21.1 43 0.0015 25.6 1.9 17 173-189 30-46 (204)
419 2hup_A RAS-related protein RAB 21.0 43 0.0015 25.5 1.9 16 175-190 31-46 (201)
420 1yqt_A RNAse L inhibitor; ATP- 21.0 45 0.0015 30.6 2.3 27 170-198 44-70 (538)
421 1j8m_F SRP54, signal recogniti 20.5 40 0.0014 28.4 1.8 18 173-190 98-115 (297)
422 2dpy_A FLII, flagellum-specifi 20.1 59 0.002 29.1 2.8 28 170-199 154-181 (438)
No 1
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.80 E-value=5e-20 Score=160.63 Aligned_cols=110 Identities=24% Similarity=0.417 Sum_probs=81.7
Q ss_pred hHHHhhhhHHHHHHHHhhcCceeccCCCCCCchhhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcC--CcEE
Q 028267 100 AKKELNKQIERDAVFRKKYNIHVSGANVPSPLRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSD--RECF 177 (211)
Q Consensus 100 ~~k~~~~~~~~~~~~~~~~~i~v~g~~~p~p~~~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G--~dvi 177 (211)
...+......+....+..+.+.+.+.+.+.|+.++..+ +.++|++.++++|..+||..||+||.++||.++.| +|+|
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~p~~~~~~f-~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l 135 (300)
T 3fmo_B 57 AAQSLLNKLIRSNLVDNTNQVEVLQRDPNSPLYSVKSF-EELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLI 135 (300)
T ss_dssp ------------CCCCCCSCEEEECSSTTCCCCCCCCS-GGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEE
T ss_pred hHHHHHHhhhhcccccccccceeccCCCCCCcCCcCCH-hhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEE
Confidence 33444444555555666788899999888876543322 34499999999999999999999999999999998 9999
Q ss_pred EEcCCCchhHHHhHHHHHHHHhcccCCCceEEe
Q 028267 178 ACAPTGSGKTLAFLCPMLMKLRVLFIPFDYFCE 210 (211)
Q Consensus 178 ~~A~TGsGKTlaf~lPil~~l~~~~~~~~~~~~ 210 (211)
++|+||||||++|++|+++++........++++
T Consensus 136 ~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil 168 (300)
T 3fmo_B 136 AQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCL 168 (300)
T ss_dssp EECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEE
T ss_pred EECCCCCCccHHHHHHHHHhhhccCCCceEEEE
Confidence 999999999999999999999776544444443
No 2
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.80 E-value=2.3e-19 Score=150.04 Aligned_cols=91 Identities=49% Similarity=0.812 Sum_probs=86.3
Q ss_pred HHHHHhhcCceeccCCCCCCchhhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHh
Q 028267 111 DAVFRKKYNIHVSGANVPSPLRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 111 ~~~~~~~~~i~v~g~~~p~p~~~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf 190 (211)
...++..++|.+.|.++|.|+.+|.++.+.|+|++.++++|..+||..|+|+|.++|+.++.|+|++++|+||||||++|
T Consensus 4 ~~~~~~~~~i~~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 4 INFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAF 83 (245)
T ss_dssp HHHHHHHTTEEEESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH
T ss_pred HHHHHHhCceEecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHH
Confidence 45788889999999999999999999988889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcc
Q 028267 191 LCPMLMKLRVL 201 (211)
Q Consensus 191 ~lPil~~l~~~ 201 (211)
++|+++++...
T Consensus 84 ~l~~l~~l~~~ 94 (245)
T 3dkp_A 84 SIPILMQLKQP 94 (245)
T ss_dssp HHHHHHHHCSC
T ss_pred HHHHHHHHhhc
Confidence 99999999753
No 3
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.77 E-value=1.3e-18 Score=145.75 Aligned_cols=89 Identities=33% Similarity=0.550 Sum_probs=83.8
Q ss_pred HHHHHHHhhcCceeccCCCCCCchhhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHH
Q 028267 109 ERDAVFRKKYNIHVSGANVPSPLRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTL 188 (211)
Q Consensus 109 ~~~~~~~~~~~i~v~g~~~p~p~~~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTl 188 (211)
++...++..+.|.+.|.+.|.|+.+|.++ +|++.++++|...||..|+|+|.++||.++.|+|++++|+||||||+
T Consensus 6 ~~~~~~~~~~~i~~~~~~~p~~~~~f~~~----~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~ 81 (242)
T 3fe2_A 6 QEVETYRRSKEITVRGHNCPKPVLNFYEA----NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTL 81 (242)
T ss_dssp CHHHHHHHHHTEEEESSCCCCCCSSTTTT----TCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHH
T ss_pred HHHHHHHhcCceEEeCCCCCCccCCHhhc----CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHH
Confidence 34567888899999999999999999888 99999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHhcc
Q 028267 189 AFLCPMLMKLRVL 201 (211)
Q Consensus 189 af~lPil~~l~~~ 201 (211)
+|++|++.++...
T Consensus 82 ~~~l~~l~~l~~~ 94 (242)
T 3fe2_A 82 SYLLPAIVHINHQ 94 (242)
T ss_dssp HHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998754
No 4
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.74 E-value=6.8e-18 Score=153.25 Aligned_cols=81 Identities=44% Similarity=0.735 Sum_probs=76.9
Q ss_pred cCceeccCCCCCCchhhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHH
Q 028267 118 YNIHVSGANVPSPLRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMK 197 (211)
Q Consensus 118 ~~i~v~g~~~p~p~~~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~ 197 (211)
..|.+.|.++|.|+.+|.++ +|++.++++|..+||..|||||.++||.++.|+|+|++|+||||||++|++|++++
T Consensus 42 ~~~~~~~~~~p~~~~~f~~~----~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~ 117 (434)
T 2db3_A 42 IPVKVTGSDVPQPIQHFTSA----DLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSK 117 (434)
T ss_dssp SCEEEESSSCCCCCCCGGGS----CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceeEecCCCCCCCcCChhhc----CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHH
Confidence 46889999999999999988 99999999999999999999999999999999999999999999999999999999
Q ss_pred Hhccc
Q 028267 198 LRVLF 202 (211)
Q Consensus 198 l~~~~ 202 (211)
+...+
T Consensus 118 l~~~~ 122 (434)
T 2db3_A 118 LLEDP 122 (434)
T ss_dssp HHHSC
T ss_pred HHhcc
Confidence 97654
No 5
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.69 E-value=1e-16 Score=141.99 Aligned_cols=79 Identities=35% Similarity=0.668 Sum_probs=74.8
Q ss_pred CceeccCCCCCCchhhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 119 NIHVSGANVPSPLRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 119 ~i~v~g~~~p~p~~~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
.|.+.|.++|.|+.+|.++ +|++.++++|..+||..|||+|.++||.++.|+|+|++|+||||||++|++|+++.+
T Consensus 2 ~~~~~~~~~p~~~~~f~~~----~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~ 77 (417)
T 2i4i_A 2 MVEATGNNCPPHIESFSDV----EMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQI 77 (417)
T ss_dssp CEEEESTTCCCCCSSGGGS----CCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CcccCCCcCCcccCCHhhC----CCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHH
Confidence 4678899999999999988 999999999999999999999999999999999999999999999999999999998
Q ss_pred hcc
Q 028267 199 RVL 201 (211)
Q Consensus 199 ~~~ 201 (211)
...
T Consensus 78 ~~~ 80 (417)
T 2i4i_A 78 YSD 80 (417)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
No 6
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.66 E-value=2.1e-16 Score=130.57 Aligned_cols=74 Identities=35% Similarity=0.583 Sum_probs=68.6
Q ss_pred cCCCCCCchhhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 124 GANVPSPLRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 124 g~~~p~p~~~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
+..+|.|+.+|.++ |++++.++++|...||..|+|+|.++|+.++.|+|++++|+||||||++|++|++..+..
T Consensus 11 ~~~~p~p~~~f~~~---~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~ 84 (228)
T 3iuy_A 11 KRLIPKPTCRFKDA---FQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDS 84 (228)
T ss_dssp CCCCCCCCCSHHHH---HTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC-
T ss_pred cCcCCCChhhHhhh---hccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHh
Confidence 45789999999984 289999999999999999999999999999999999999999999999999999998864
No 7
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.66 E-value=6.7e-17 Score=147.39 Aligned_cols=97 Identities=27% Similarity=0.473 Sum_probs=78.8
Q ss_pred HHHHHHhhcCceeccCCCCCCch---hhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcC--CcEEEEcCCCc
Q 028267 110 RDAVFRKKYNIHVSGANVPSPLR---TFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSD--RECFACAPTGS 184 (211)
Q Consensus 110 ~~~~~~~~~~i~v~g~~~p~p~~---~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G--~dvi~~A~TGs 184 (211)
........+.+.+.+.+.+.|+. +|.++ +|++.++++|..+||..|+|||.++||.++.| +|+|++|+|||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~----~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGs 142 (479)
T 3fmp_B 67 RSNLVDNTNQVEVLQRDPNSPLYSVKSFEEL----RLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGT 142 (479)
T ss_dssp ---CCCCCSCEEEECSSTTSCCCCCCCSGGG----TCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSS
T ss_pred hhhhccCCccceecCCCCCCCccCcCCHHHc----CCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCC
Confidence 33344455667788888777754 55555 99999999999999999999999999999997 99999999999
Q ss_pred hhHHHhHHHHHHHHhcccCCCceEEe
Q 028267 185 GKTLAFLCPMLMKLRVLFIPFDYFCE 210 (211)
Q Consensus 185 GKTlaf~lPil~~l~~~~~~~~~~~~ 210 (211)
|||++|++|+++.+........++++
T Consensus 143 GKT~~~~l~il~~l~~~~~~~~~lil 168 (479)
T 3fmp_B 143 GKTAAFVLAMLSQVEPANKYPQCLCL 168 (479)
T ss_dssp SHHHHHHHHHHTTCCTTSCSCCEEEE
T ss_pred chhHHHHHHHHHHHhhcCCCCcEEEE
Confidence 99999999999998766544455544
No 8
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.66 E-value=2e-16 Score=132.20 Aligned_cols=83 Identities=27% Similarity=0.415 Sum_probs=68.5
Q ss_pred eccCCCCCCchhhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhcc
Q 028267 122 VSGANVPSPLRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVL 201 (211)
Q Consensus 122 v~g~~~p~p~~~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~ 201 (211)
+...++|.+..+|+++ +|++.++++|...||..|+++|.++|+.++.|+|++++|+||||||++|++|+++.+...
T Consensus 20 ~~~~~~~~~~~~f~~l----~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~ 95 (237)
T 3bor_A 20 VIESNWNEIVDNFDDM----NLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE 95 (237)
T ss_dssp -------CCCCSGGGS----CCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT
T ss_pred cccCCCCCccCChhhc----CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc
Confidence 3455677888888888 999999999999999999999999999999999999999999999999999999998755
Q ss_pred cCCCceE
Q 028267 202 FIPFDYF 208 (211)
Q Consensus 202 ~~~~~~~ 208 (211)
.....++
T Consensus 96 ~~~~~~l 102 (237)
T 3bor_A 96 FKETQAL 102 (237)
T ss_dssp SCSCCEE
T ss_pred CCCceEE
Confidence 4333333
No 9
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.65 E-value=4.1e-16 Score=129.59 Aligned_cols=80 Identities=25% Similarity=0.318 Sum_probs=65.3
Q ss_pred cCCCCCCchhhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhcccC
Q 028267 124 GANVPSPLRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVLFI 203 (211)
Q Consensus 124 g~~~p~p~~~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~~ 203 (211)
+...|.+..+|.++ +|++.++++|..+||..|+++|.++|+.++.|+|++++|+||||||++|++|++..+.....
T Consensus 16 ~~~~~~~~~~f~~l----~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~ 91 (230)
T 2oxc_A 16 GDVLLAEPADFESL----LLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENL 91 (230)
T ss_dssp --------CCGGGG----TCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSC
T ss_pred CCCCCCCCCCHhhc----CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCC
Confidence 45566777788888 99999999999999999999999999999999999999999999999999999999865443
Q ss_pred CCce
Q 028267 204 PFDY 207 (211)
Q Consensus 204 ~~~~ 207 (211)
...+
T Consensus 92 ~~~~ 95 (230)
T 2oxc_A 92 STQI 95 (230)
T ss_dssp SCCE
T ss_pred CceE
Confidence 3333
No 10
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.64 E-value=6.1e-16 Score=127.05 Aligned_cols=82 Identities=24% Similarity=0.373 Sum_probs=71.9
Q ss_pred cCCCCCCchhhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhcccC
Q 028267 124 GANVPSPLRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVLFI 203 (211)
Q Consensus 124 g~~~p~p~~~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~~ 203 (211)
..+.+.++.+|.++ +|++.++++|...||..|+|+|.++|+.++.|+|++++++||||||++|++|+++.+.....
T Consensus 6 ~~~~~~~~~~f~~l----~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~ 81 (224)
T 1qde_A 6 QTNYDKVVYKFDDM----ELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVK 81 (224)
T ss_dssp CBSCCCCCCCGGGG----TCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCC
T ss_pred ccccCcccCChhhc----CCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCC
Confidence 34567778889888 99999999999999999999999999999999999999999999999999999999876544
Q ss_pred CCceEE
Q 028267 204 PFDYFC 209 (211)
Q Consensus 204 ~~~~~~ 209 (211)
...++.
T Consensus 82 ~~~~li 87 (224)
T 1qde_A 82 APQALM 87 (224)
T ss_dssp SCCEEE
T ss_pred CceEEE
Confidence 434433
No 11
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.64 E-value=1.4e-16 Score=133.86 Aligned_cols=80 Identities=38% Similarity=0.657 Sum_probs=73.9
Q ss_pred cCceeccCCCCC--CchhhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHH
Q 028267 118 YNIHVSGANVPS--PLRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPML 195 (211)
Q Consensus 118 ~~i~v~g~~~p~--p~~~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil 195 (211)
..+.+.|...|. ++.+|.++ +|++.++++|..+||..|+|+|.++|+.++.|+|++++|+||||||++|++|++
T Consensus 7 ~~~~~~~~~~~~~~~~~~f~~l----~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l 82 (253)
T 1wrb_A 7 IPVSVTGPDYSATNVIENFDEL----KLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPII 82 (253)
T ss_dssp CCCCEECCSSSCCSCCCSSGGG----SCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceeeeCCCCCCCCccCCHhhC----CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHH
Confidence 356678888887 88899888 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcc
Q 028267 196 MKLRVL 201 (211)
Q Consensus 196 ~~l~~~ 201 (211)
..+...
T Consensus 83 ~~l~~~ 88 (253)
T 1wrb_A 83 NHLVCQ 88 (253)
T ss_dssp HHHHTT
T ss_pred HHHHhh
Confidence 998754
No 12
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.62 E-value=9.6e-16 Score=126.07 Aligned_cols=70 Identities=26% Similarity=0.465 Sum_probs=63.3
Q ss_pred chhhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhcccCC
Q 028267 131 LRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVLFIP 204 (211)
Q Consensus 131 ~~~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~~~ 204 (211)
..+|+++ +|++.++++|..+||..|+++|.++|+.++.|+|++++|+||||||++|++|+++.+......
T Consensus 3 ~~~f~~~----~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~ 72 (219)
T 1q0u_A 3 ETQFTRF----PFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAE 72 (219)
T ss_dssp -CCGGGS----CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCS
T ss_pred CCCHhhC----CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCC
Confidence 3457666 999999999999999999999999999999999999999999999999999999998765433
No 13
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.61 E-value=1.7e-15 Score=122.74 Aligned_cols=67 Identities=36% Similarity=0.602 Sum_probs=61.6
Q ss_pred hhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhcccC
Q 028267 133 TFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVLFI 203 (211)
Q Consensus 133 ~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~~ 203 (211)
+|+++ +|++.++++|..+||..|+|+|.++|+.++.|+|++++|+||||||++|++|++..+.....
T Consensus 4 ~f~~~----~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~ 70 (206)
T 1vec_A 4 EFEDY----CLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKD 70 (206)
T ss_dssp SGGGS----CCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSC
T ss_pred Chhhc----CCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCC
Confidence 45555 99999999999999999999999999999999999999999999999999999999865443
No 14
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.61 E-value=1.6e-15 Score=124.39 Aligned_cols=71 Identities=24% Similarity=0.381 Sum_probs=62.1
Q ss_pred CCchhhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhcccC
Q 028267 129 SPLRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVLFI 203 (211)
Q Consensus 129 ~p~~~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~~ 203 (211)
.+..+|.++ +|++.++++|...||..|+|+|.++|+.++.|+|++++++||||||++|++|++..+.....
T Consensus 11 ~~~~~f~~~----~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~ 81 (220)
T 1t6n_A 11 IHSSGFRDF----LLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTG 81 (220)
T ss_dssp ---CCSTTS----CCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTT
T ss_pred ccCCCHhhc----CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCC
Confidence 333445555 99999999999999999999999999999999999999999999999999999999876443
No 15
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.60 E-value=1.8e-15 Score=127.89 Aligned_cols=76 Identities=37% Similarity=0.460 Sum_probs=67.0
Q ss_pred chhhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhcccCCCceEEe
Q 028267 131 LRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVLFIPFDYFCE 210 (211)
Q Consensus 131 ~~~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~~~~~~~~~ 210 (211)
..+|.++ +|++.++++|..+||..|+++|.++|+.++.|+|++++|+||||||++|++|+++.+........++++
T Consensus 42 ~~~f~~l----~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil 117 (249)
T 3ber_A 42 TKTFKDL----GVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVL 117 (249)
T ss_dssp HCCTGGG----TCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEE
T ss_pred cCCHHHc----CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEE
Confidence 3456666 999999999999999999999999999999999999999999999999999999998876554444443
No 16
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.59 E-value=2.7e-15 Score=124.53 Aligned_cols=69 Identities=36% Similarity=0.511 Sum_probs=63.8
Q ss_pred CCCchhhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 128 PSPLRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 128 p~p~~~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
+.++.+|.++ +|++.++++|..+||..|+|+|.++|+.++.|+|++++|+||||||++|++|+++.+..
T Consensus 21 ~~~~~~f~~~----~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~ 89 (236)
T 2pl3_A 21 VNEITRFSDF----PLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYR 89 (236)
T ss_dssp GGGCSBGGGS----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CcccCCHhhc----CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHh
Confidence 3455677776 99999999999999999999999999999999999999999999999999999999865
No 17
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.58 E-value=2.7e-15 Score=132.13 Aligned_cols=89 Identities=27% Similarity=0.507 Sum_probs=72.1
Q ss_pred hcCceeccCCCCCC---chhhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcC--CcEEEEcCCCchhHHHhH
Q 028267 117 KYNIHVSGANVPSP---LRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSD--RECFACAPTGSGKTLAFL 191 (211)
Q Consensus 117 ~~~i~v~g~~~p~p---~~~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G--~dvi~~A~TGsGKTlaf~ 191 (211)
.+.+.+.....+.| +.+|.++ +|++.++++|...||..|+|+|.++|+.++.| +++|++|+||||||++|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~f~~~----~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~ 82 (412)
T 3fht_A 7 TNQVEVLQRDPNSPLYSVKSFEEL----RLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFV 82 (412)
T ss_dssp -CHHHHHTTCTTSTTCCSSCTGGG----TCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHH
T ss_pred cccceeecccCCCCccccCCHhhC----CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHH
Confidence 34444555555555 4456655 99999999999999999999999999999998 999999999999999999
Q ss_pred HHHHHHHhcccCCCceEE
Q 028267 192 CPMLMKLRVLFIPFDYFC 209 (211)
Q Consensus 192 lPil~~l~~~~~~~~~~~ 209 (211)
+|+++.+........++.
T Consensus 83 ~~~~~~~~~~~~~~~~li 100 (412)
T 3fht_A 83 LAMLSQVEPANKYPQCLC 100 (412)
T ss_dssp HHHHHHCCTTSCSCCEEE
T ss_pred HHHHHHhhhcCCCCCEEE
Confidence 999999876554434443
No 18
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.56 E-value=9.3e-15 Score=129.50 Aligned_cols=81 Identities=26% Similarity=0.415 Sum_probs=69.2
Q ss_pred cCCCCCCchhhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhcccC
Q 028267 124 GANVPSPLRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVLFI 203 (211)
Q Consensus 124 g~~~p~p~~~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~~ 203 (211)
....+.+..+|.++ +|++.++++|...||..|+|+|.++|+.++.|+|++++|+||||||++|++|+++.+.....
T Consensus 29 ~~~~~~~~~~f~~~----~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~ 104 (410)
T 2j0s_A 29 TSEEVDVTPTFDTM----GLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVR 104 (410)
T ss_dssp CCTTCCCCCSGGGG----CCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSC
T ss_pred CCCCccCCCCHhhc----CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccC
Confidence 33444566678887 99999999999999999999999999999999999999999999999999999999865433
Q ss_pred CCceE
Q 028267 204 PFDYF 208 (211)
Q Consensus 204 ~~~~~ 208 (211)
...++
T Consensus 105 ~~~~l 109 (410)
T 2j0s_A 105 ETQAL 109 (410)
T ss_dssp SCCEE
T ss_pred CceEE
Confidence 33333
No 19
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.55 E-value=1.1e-14 Score=117.73 Aligned_cols=64 Identities=36% Similarity=0.562 Sum_probs=60.2
Q ss_pred hhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 133 TFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 133 ~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
+|.++ +|++.++++|..+||..|+|+|.++|+.++.|+|++++++||||||++|++|+++.+..
T Consensus 2 ~f~~~----~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~ 65 (207)
T 2gxq_A 2 EFKDF----PLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAP 65 (207)
T ss_dssp CGGGS----CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCC
T ss_pred Chhhc----CCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhh
Confidence 35555 99999999999999999999999999999999999999999999999999999999865
No 20
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.53 E-value=1.1e-14 Score=123.88 Aligned_cols=59 Identities=41% Similarity=0.597 Sum_probs=57.2
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhcc
Q 028267 143 CESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVL 201 (211)
Q Consensus 143 l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~ 201 (211)
|++.++++|..+||..|+|+|.++|+.++.|+|+|++|+||||||++|++|+++.+...
T Consensus 61 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~ 119 (262)
T 3ly5_A 61 VNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKL 119 (262)
T ss_dssp CCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999998763
No 21
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.50 E-value=4.5e-14 Score=123.22 Aligned_cols=75 Identities=31% Similarity=0.541 Sum_probs=65.4
Q ss_pred chhhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcC--CcEEEEcCCCchhHHHhHHHHHHHHhcccCCCceE
Q 028267 131 LRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSD--RECFACAPTGSGKTLAFLCPMLMKLRVLFIPFDYF 208 (211)
Q Consensus 131 ~~~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G--~dvi~~A~TGsGKTlaf~lPil~~l~~~~~~~~~~ 208 (211)
..+|+++ +|++.++++|...||..|+|+|.++|+.++.| +++|++|+||||||++|++|++..+........++
T Consensus 4 ~~~f~~~----~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~l 79 (395)
T 3pey_A 4 AKSFDEL----GLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAI 79 (395)
T ss_dssp CCSSTTS----CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEE
T ss_pred ccCHhhC----CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEE
Confidence 3466666 99999999999999999999999999999998 99999999999999999999999987654443443
Q ss_pred E
Q 028267 209 C 209 (211)
Q Consensus 209 ~ 209 (211)
.
T Consensus 80 i 80 (395)
T 3pey_A 80 C 80 (395)
T ss_dssp E
T ss_pred E
Confidence 3
No 22
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.50 E-value=5.5e-14 Score=124.04 Aligned_cols=83 Identities=23% Similarity=0.371 Sum_probs=72.2
Q ss_pred ccCCCCCCchhhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhccc
Q 028267 123 SGANVPSPLRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVLF 202 (211)
Q Consensus 123 ~g~~~p~p~~~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~ 202 (211)
...+.+..+.+|.++ +|++.++++|...||..|+++|.++|+.++.|+|+|++|+||||||++|++|+++.+....
T Consensus 31 ~~~~~~~~~~~f~~~----~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~ 106 (414)
T 3eiq_A 31 IESNWNEIVDSFDDM----NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDL 106 (414)
T ss_dssp CCCCCCCCCCCGGGG----CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTS
T ss_pred cCCCccchhcCHhhC----CCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcC
Confidence 345566777788887 9999999999999999999999999999999999999999999999999999999987654
Q ss_pred CCCceEE
Q 028267 203 IPFDYFC 209 (211)
Q Consensus 203 ~~~~~~~ 209 (211)
....++.
T Consensus 107 ~~~~~li 113 (414)
T 3eiq_A 107 KATQALV 113 (414)
T ss_dssp CSCCEEE
T ss_pred CceeEEE
Confidence 4444443
No 23
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.49 E-value=5.8e-14 Score=122.92 Aligned_cols=79 Identities=25% Similarity=0.393 Sum_probs=69.1
Q ss_pred CCCCCchhhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhcccCCC
Q 028267 126 NVPSPLRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVLFIPF 205 (211)
Q Consensus 126 ~~p~p~~~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~~~~ 205 (211)
....+..+|+++ +|++.++++|...||..|+|+|.++|+.++.|+|++++|+||+|||++|++|++..+.......
T Consensus 15 ~~~~~~~~f~~~----~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~ 90 (394)
T 1fuu_A 15 NYDKVVYKFDDM----ELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAP 90 (394)
T ss_dssp SSCCCCCSSGGG----CCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSC
T ss_pred hcccccCChhhc----CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCC
Confidence 345566778887 9999999999999999999999999999999999999999999999999999999987654443
Q ss_pred ceE
Q 028267 206 DYF 208 (211)
Q Consensus 206 ~~~ 208 (211)
.++
T Consensus 91 ~~l 93 (394)
T 1fuu_A 91 QAL 93 (394)
T ss_dssp CEE
T ss_pred CEE
Confidence 333
No 24
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.48 E-value=7e-14 Score=123.27 Aligned_cols=71 Identities=37% Similarity=0.562 Sum_probs=63.3
Q ss_pred CchhhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhcccCC
Q 028267 130 PLRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVLFIP 204 (211)
Q Consensus 130 p~~~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~~~ 204 (211)
+..+|.++ +|++.++++|..+||..|+|+|.++|+.++.|+|++++|+||||||++|++|++..+......
T Consensus 19 ~~~~f~~~----~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~ 89 (400)
T 1s2m_A 19 KGNTFEDF----YLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNK 89 (400)
T ss_dssp --CCGGGG----CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCS
T ss_pred ccCChhhc----CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCC
Confidence 34467777 999999999999999999999999999999999999999999999999999999998654333
No 25
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.47 E-value=9.2e-14 Score=130.15 Aligned_cols=75 Identities=28% Similarity=0.372 Sum_probs=66.8
Q ss_pred CCCchhhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHh--cCCcEEEEcCCCchhHHHhHHHHHHHHhccc
Q 028267 128 PSPLRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLL--SDRECFACAPTGSGKTLAFLCPMLMKLRVLF 202 (211)
Q Consensus 128 p~p~~~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il--~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~ 202 (211)
+.+..+|.++.+...|++.++++|..+||..|+|+|.++|+.++ .|+|+|++|+||||||++|++|+++.+....
T Consensus 13 ~~~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~ 89 (579)
T 3sqw_A 13 NSKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTK 89 (579)
T ss_dssp SCCCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTT
T ss_pred CCCCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcc
Confidence 34445677776666799999999999999999999999999999 7899999999999999999999999987653
No 26
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.47 E-value=1.2e-13 Score=121.09 Aligned_cols=72 Identities=24% Similarity=0.406 Sum_probs=63.8
Q ss_pred hhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhcccCCCceE
Q 028267 133 TFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVLFIPFDYF 208 (211)
Q Consensus 133 ~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~~~~~~~ 208 (211)
+|+++ +|++.++++|..+||..|+|+|.++|+.++.|+|++++|+||+|||++|++|++..+........++
T Consensus 9 ~f~~~----~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~l 80 (391)
T 1xti_A 9 GFRDF----LLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVL 80 (391)
T ss_dssp CGGGG----CCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEE
T ss_pred Chhhc----CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEE
Confidence 46665 9999999999999999999999999999999999999999999999999999999987654443333
No 27
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.46 E-value=1.4e-13 Score=127.66 Aligned_cols=74 Identities=28% Similarity=0.381 Sum_probs=65.7
Q ss_pred CCchhhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHh--cCCcEEEEcCCCchhHHHhHHHHHHHHhccc
Q 028267 129 SPLRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLL--SDRECFACAPTGSGKTLAFLCPMLMKLRVLF 202 (211)
Q Consensus 129 ~p~~~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il--~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~ 202 (211)
.+..+|.++.+...|++.++++|...||..|+|+|.++|+.++ .|+|+|++|+||||||++|++|+++.+....
T Consensus 65 ~~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~ 140 (563)
T 3i5x_A 65 SKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTK 140 (563)
T ss_dssp CCCCCHHHHHHTTSSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTT
T ss_pred CCCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcc
Confidence 3344677776666699999999999999999999999999999 6799999999999999999999999997754
No 28
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.41 E-value=4.1e-13 Score=115.98 Aligned_cols=70 Identities=31% Similarity=0.429 Sum_probs=62.6
Q ss_pred hhhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcC-CcEEEEcCCCchhHHHhHHHHHHHHhcccCCC
Q 028267 132 RTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSD-RECFACAPTGSGKTLAFLCPMLMKLRVLFIPF 205 (211)
Q Consensus 132 ~~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G-~dvi~~A~TGsGKTlaf~lPil~~l~~~~~~~ 205 (211)
.+|.++ +|++.++++|..+||..|+|+|.++|+.++.| ++++++|+||||||++|++|++..+.......
T Consensus 6 ~~f~~~----~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~ 76 (367)
T 1hv8_A 6 MNFNEL----NLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIE 76 (367)
T ss_dssp CCGGGS----SCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCC
T ss_pred Cchhhc----CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCc
Confidence 356666 99999999999999999999999999999998 79999999999999999999999887654333
No 29
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.28 E-value=9.3e-12 Score=106.40 Aligned_cols=55 Identities=33% Similarity=0.553 Sum_probs=52.7
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHH
Q 028267 143 CESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMK 197 (211)
Q Consensus 143 l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~ 197 (211)
|++.++++|..+||..|+|+|.++|+.++.|++++++++||+|||++|++|+++.
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~ 55 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL 55 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 5789999999999999999999999999999999999999999999999999874
No 30
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.20 E-value=1e-11 Score=115.75 Aligned_cols=61 Identities=36% Similarity=0.566 Sum_probs=56.3
Q ss_pred hhhhhcccCCCCHHHHHHHHH-cCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHH
Q 028267 133 TFVKLSSRFGCESYLLRNLAE-LGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMK 197 (211)
Q Consensus 133 ~f~~l~~~~~l~~~ll~~l~~-~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~ 197 (211)
+|+++ +|++.+++.|.. .||..|+|+|.++|+.++.|+|+++++|||+|||++|++|++..
T Consensus 3 ~fe~l----~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~ 64 (523)
T 1oyw_A 3 QAEVL----NLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL 64 (523)
T ss_dssp CCCCS----SHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS
T ss_pred ChhhC----CCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh
Confidence 45555 999999999998 89999999999999999999999999999999999999999853
No 31
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.17 E-value=3.7e-11 Score=115.32 Aligned_cols=64 Identities=25% Similarity=0.337 Sum_probs=59.5
Q ss_pred hhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhh-HhcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 133 TFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPV-LLSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 133 ~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~-il~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
+|+++ +|++.+++.|...||..|+|+|.++|+. ++.|+++|++||||||||++|.+|+++.+..
T Consensus 2 ~f~~l----~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~ 66 (720)
T 2zj8_A 2 RVDEL----RVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILT 66 (720)
T ss_dssp BGGGC----CSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHH
T ss_pred cHhhc----CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHh
Confidence 35555 9999999999999999999999999998 8999999999999999999999999998874
No 32
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.16 E-value=5.4e-11 Score=113.85 Aligned_cols=65 Identities=28% Similarity=0.312 Sum_probs=60.4
Q ss_pred hhhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhh-HhcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 132 RTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPV-LLSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 132 ~~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~-il~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
.+|+++ +|++.+++.|...||..|+|+|.++|+. ++.|+++|++||||||||++|.+|+++.+..
T Consensus 8 ~~~~~l----~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~ 73 (715)
T 2va8_A 8 MPIEDL----KLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK 73 (715)
T ss_dssp CBGGGS----SSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CcHHHc----CCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH
Confidence 456666 9999999999999999999999999999 7899999999999999999999999998874
No 33
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.15 E-value=3.3e-11 Score=114.23 Aligned_cols=66 Identities=27% Similarity=0.440 Sum_probs=58.3
Q ss_pred CCchhhhhhcccCCCCHHHHHHHHH-cCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHH
Q 028267 129 SPLRTFVKLSSRFGCESYLLRNLAE-LGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLM 196 (211)
Q Consensus 129 ~p~~~f~~l~~~~~l~~~ll~~l~~-~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~ 196 (211)
.....|.. .+|++++.++..|.. .||..|+|+|.++|+.++.|+|+|+++|||+|||++|++|++.
T Consensus 16 ~~~~~w~~--~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~ 82 (591)
T 2v1x_A 16 SSPAAWNK--EDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC 82 (591)
T ss_dssp CCGGGGCC--SCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT
T ss_pred cchhcccc--ccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHH
Confidence 33445543 356999999999998 5999999999999999999999999999999999999999985
No 34
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.14 E-value=1.1e-11 Score=114.72 Aligned_cols=69 Identities=25% Similarity=0.351 Sum_probs=48.2
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcC--CcEEEEcCCCchhHHHhHHHHHHHHhcccCCCceEEe
Q 028267 142 GCESYLLRNLAELGYKEPTPIQRQAIPVLLSD--RECFACAPTGSGKTLAFLCPMLMKLRVLFIPFDYFCE 210 (211)
Q Consensus 142 ~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G--~dvi~~A~TGsGKTlaf~lPil~~l~~~~~~~~~~~~ 210 (211)
++++.+++.|...||..|+++|.++|+.++.| +++|++|+||||||++|++|++..+........++.+
T Consensus 125 ~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl 195 (508)
T 3fho_A 125 XXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICL 195 (508)
T ss_dssp --------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEE
T ss_pred ccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEE
Confidence 89999999999999999999999999999998 9999999999999999999999998765544444443
No 35
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.12 E-value=2.6e-11 Score=116.02 Aligned_cols=64 Identities=28% Similarity=0.328 Sum_probs=56.7
Q ss_pred hhhhhcccCC--CCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 133 TFVKLSSRFG--CESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 133 ~f~~l~~~~~--l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
+|+++ + |++.+++.|...||..|+|+|.++|+.++.|+++|++||||||||++|.+|++..+..
T Consensus 2 ~f~~l----~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~ 67 (702)
T 2p6r_A 2 KVEEL----AESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK 67 (702)
T ss_dssp CSHHH----HHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT
T ss_pred chhhh----hhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh
Confidence 45666 6 9999999999999999999999999999999999999999999999999999998864
No 36
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.11 E-value=2.4e-11 Score=122.65 Aligned_cols=59 Identities=20% Similarity=0.099 Sum_probs=54.1
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 142 GCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 142 ~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
++++.+...+...++..|+|+|.++|+.++.|+|+|++|+||||||++|++|++..+..
T Consensus 168 ~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~ 226 (1108)
T 3l9o_A 168 PIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN 226 (1108)
T ss_dssp TTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT
T ss_pred CCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc
Confidence 77777777777888889999999999999999999999999999999999999999854
No 37
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.01 E-value=3.6e-10 Score=100.66 Aligned_cols=51 Identities=24% Similarity=0.210 Sum_probs=44.7
Q ss_pred HHHHHHH-cCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 147 LLRNLAE-LGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 147 ll~~l~~-~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
+.+.|.. .|| .|||+|.++|+.++.|+|++++||||||||++|++|++..+
T Consensus 10 ~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~ 61 (414)
T 3oiy_A 10 FRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA 61 (414)
T ss_dssp HHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh
Confidence 4445555 356 89999999999999999999999999999999999998877
No 38
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=98.98 E-value=5e-10 Score=106.07 Aligned_cols=55 Identities=22% Similarity=0.260 Sum_probs=46.5
Q ss_pred HHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhccc
Q 028267 148 LRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVLF 202 (211)
Q Consensus 148 l~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~ 202 (211)
..+|..+||..|+|+|..+|+.++.|+|+|++++||+|||++|++|+++.+...+
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~ 57 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP 57 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCc
Confidence 3467788999999999999999999999999999999999999999999987654
No 39
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=98.88 E-value=1.6e-09 Score=98.82 Aligned_cols=49 Identities=22% Similarity=0.336 Sum_probs=42.4
Q ss_pred cCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhccc
Q 028267 154 LGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVLF 202 (211)
Q Consensus 154 ~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~ 202 (211)
++...|+|+|.++|+.++.|+|+|++++||||||++|++|+++.+...+
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~ 51 (556)
T 4a2p_A 3 METKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP 51 (556)
T ss_dssp -----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCc
Confidence 4566899999999999999999999999999999999999999998765
No 40
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=98.88 E-value=2e-09 Score=105.54 Aligned_cols=44 Identities=27% Similarity=0.264 Sum_probs=40.6
Q ss_pred HHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 152 AELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 152 ~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
+.+|| .|||||..+||.++.|+ |++|+||+|||++|+||++...
T Consensus 78 r~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~a 121 (844)
T 1tf5_A 78 RVTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNA 121 (844)
T ss_dssp HHHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHH
T ss_pred HHcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHH
Confidence 35899 99999999999999999 8999999999999999998553
No 41
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=98.83 E-value=3.9e-09 Score=84.90 Aligned_cols=50 Identities=24% Similarity=0.227 Sum_probs=44.7
Q ss_pred HHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhcc
Q 028267 152 AELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVL 201 (211)
Q Consensus 152 ~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~ 201 (211)
...+...|+++|.++++.++.|++++++++||+|||++|++|++..+...
T Consensus 27 ~~~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~ 76 (216)
T 3b6e_A 27 SPEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKK 76 (216)
T ss_dssp CCSCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhc
Confidence 34456689999999999999999999999999999999999999887654
No 42
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=98.80 E-value=5.2e-09 Score=101.61 Aligned_cols=50 Identities=22% Similarity=0.298 Sum_probs=43.4
Q ss_pred HcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhccc
Q 028267 153 ELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVLF 202 (211)
Q Consensus 153 ~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~ 202 (211)
-.|+..|+|+|..+|+.++.|+|+|++++||||||++|++|++..+...+
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~ 292 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP 292 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc
Confidence 46899999999999999999999999999999999999999999998764
No 43
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=98.79 E-value=3.6e-09 Score=110.85 Aligned_cols=67 Identities=24% Similarity=0.228 Sum_probs=57.9
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcC-CcEEEEcCCCchhHHHhHHHHHHHHhcccCCCceE
Q 028267 142 GCESYLLRNLAELGYKEPTPIQRQAIPVLLSD-RECFACAPTGSGKTLAFLCPMLMKLRVLFIPFDYF 208 (211)
Q Consensus 142 ~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G-~dvi~~A~TGsGKTlaf~lPil~~l~~~~~~~~~~ 208 (211)
.|.+..+++|...+|..++|||.++|+.++.+ .|++++||||||||++|.+||+..|...++...+|
T Consensus 910 ~L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavy 977 (1724)
T 4f92_B 910 ALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVY 977 (1724)
T ss_dssp GSCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEE
T ss_pred cccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEE
Confidence 35567888899999999999999999999865 67999999999999999999999998766554444
No 44
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=98.74 E-value=1.4e-08 Score=102.40 Aligned_cols=45 Identities=27% Similarity=0.252 Sum_probs=41.8
Q ss_pred HcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 153 ELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 153 ~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
..|| .|||+|.++||.++.|+|+|++|+||||||++|++|++..+
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~ 118 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA 118 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH
Confidence 4688 69999999999999999999999999999999988888877
No 45
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=98.71 E-value=1.2e-08 Score=102.53 Aligned_cols=46 Identities=33% Similarity=0.332 Sum_probs=43.2
Q ss_pred HHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 152 AELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 152 ~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
..+||. | |+|.++||.++.|+|+|++|+||||||+ |++|++.++..
T Consensus 52 ~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~ 97 (1054)
T 1gku_B 52 KCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL 97 (1054)
T ss_dssp TTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT
T ss_pred HhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh
Confidence 458999 9 9999999999999999999999999999 99999999875
No 46
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=98.70 E-value=7.3e-10 Score=105.61 Aligned_cols=58 Identities=12% Similarity=0.060 Sum_probs=46.8
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 142 GCESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 142 ~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
++++.++++|... +..|+|||++++|.++.|+|+|++|+||||||++|++|+|+.+..
T Consensus 156 ~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~ 213 (618)
T 2whx_A 156 TKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK 213 (618)
T ss_dssp ------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH
T ss_pred cchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 5666666666543 589999999999999999999999999999999999999999875
No 47
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.68 E-value=2.2e-08 Score=83.23 Aligned_cols=59 Identities=15% Similarity=0.059 Sum_probs=48.3
Q ss_pred CHHHHHHHHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhccc
Q 028267 144 ESYLLRNLAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVLF 202 (211)
Q Consensus 144 ~~~ll~~l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~ 202 (211)
++.+...+...+...++++|..+++.+..|++++++|+||||||.+|.++++..+....
T Consensus 47 ~~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~ 105 (235)
T 3llm_A 47 DHDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQND 105 (235)
T ss_dssp CHHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC
Confidence 34444444444555679999999999999999999999999999999999999876544
No 48
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=98.62 E-value=2.4e-08 Score=98.99 Aligned_cols=51 Identities=22% Similarity=0.294 Sum_probs=43.0
Q ss_pred HHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhccc
Q 028267 152 AELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVLF 202 (211)
Q Consensus 152 ~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~ 202 (211)
.-.|+..|+|+|.++|+.++.|+|+|++++||||||++|++|++..+...+
T Consensus 242 ~l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~ 292 (936)
T 4a2w_A 242 PVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP 292 (936)
T ss_dssp ------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCC
T ss_pred cccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhcc
Confidence 345788999999999999999999999999999999999999999987754
No 49
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=98.61 E-value=1.4e-08 Score=106.32 Aligned_cols=48 Identities=35% Similarity=0.497 Sum_probs=44.3
Q ss_pred CCCCCcHHHHHHHhhHhc-CCcEEEEcCCCchhHHHhHHHHHHHHhccc
Q 028267 155 GYKEPTPIQRQAIPVLLS-DRECFACAPTGSGKTLAFLCPMLMKLRVLF 202 (211)
Q Consensus 155 g~~~pt~iQ~~aip~il~-G~dvi~~A~TGsGKTlaf~lPil~~l~~~~ 202 (211)
||.++++||.+++|.++. +.|+|+|||||||||++|.|||+..|.+..
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~ 124 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHI 124 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGC
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhc
Confidence 899999999999999874 789999999999999999999999997643
No 50
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=98.61 E-value=2.9e-08 Score=97.42 Aligned_cols=44 Identities=27% Similarity=0.211 Sum_probs=39.6
Q ss_pred HcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 153 ELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 153 ~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
..|. .||+||..++|.++.|+ |++++||||||++|+||++....
T Consensus 70 ~lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l 113 (853)
T 2fsf_A 70 VFGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNAL 113 (853)
T ss_dssp HHSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHT
T ss_pred HcCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHH
Confidence 3564 89999999999999999 89999999999999999997654
No 51
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=98.60 E-value=4.4e-08 Score=96.63 Aligned_cols=45 Identities=27% Similarity=0.293 Sum_probs=40.8
Q ss_pred HHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 152 AELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 152 ~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+..|+ .||+||..++|.++.|+ |++++||+|||++|+||++....
T Consensus 106 R~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL 150 (922)
T 1nkt_A 106 RVLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNAL 150 (922)
T ss_dssp HHHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHT
T ss_pred HHcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHH
Confidence 45798 99999999999999999 99999999999999999976544
No 52
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=98.57 E-value=6.8e-08 Score=95.47 Aligned_cols=45 Identities=27% Similarity=0.228 Sum_probs=40.6
Q ss_pred HHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 152 AELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 152 ~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+.+|+ .||+||..+||+++.|+ |++++||||||++|+||++....
T Consensus 74 R~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL 118 (997)
T 2ipc_A 74 RYLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNAL 118 (997)
T ss_dssp HHTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHT
T ss_pred HHhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHH
Confidence 45799 99999999999999999 89999999999999999965443
No 53
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=98.56 E-value=4.2e-08 Score=92.83 Aligned_cols=45 Identities=24% Similarity=0.276 Sum_probs=42.4
Q ss_pred CCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhccc
Q 028267 158 EPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVLF 202 (211)
Q Consensus 158 ~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~ 202 (211)
.|+|+|..+|+.++.|+|+|++++||+|||++|++|+++.+....
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~ 51 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKK 51 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhcc
Confidence 699999999999999999999999999999999999999987653
No 54
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=98.56 E-value=8.4e-08 Score=93.77 Aligned_cols=53 Identities=21% Similarity=0.204 Sum_probs=47.0
Q ss_pred HHHHHHHcCCCCCcHHHHHHHhhHhcC------CcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 147 LLRNLAELGYKEPTPIQRQAIPVLLSD------RECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 147 ll~~l~~~g~~~pt~iQ~~aip~il~G------~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
+...+...|| .||++|.++|+.++.+ +|++++|+||||||++|++|++..+..
T Consensus 358 ~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~ 416 (780)
T 1gm5_A 358 AEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA 416 (780)
T ss_dssp HHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4444678899 9999999999999876 699999999999999999999998864
No 55
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=98.54 E-value=5.1e-09 Score=100.77 Aligned_cols=51 Identities=18% Similarity=0.148 Sum_probs=43.6
Q ss_pred HHHHcCCC-----CCcHHHH-----HHHhhHh------cCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 150 NLAELGYK-----EPTPIQR-----QAIPVLL------SDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 150 ~l~~~g~~-----~pt~iQ~-----~aip~il------~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
+|..+||. .||+||+ .+||.++ .|+|+|++|+||||||++|++|+++.+..
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~ 268 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ 268 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 45667887 9999999 9999988 89999999999999999999999998765
No 56
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=98.42 E-value=2.3e-07 Score=92.98 Aligned_cols=49 Identities=20% Similarity=0.259 Sum_probs=44.1
Q ss_pred HHHcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 151 LAELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 151 l~~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
....+|. |+|+|.++|+.++.|+++|++|+||||||++|.+|++..+..
T Consensus 80 ~~~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~ 128 (1010)
T 2xgj_A 80 ARTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN 128 (1010)
T ss_dssp SCCCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc
Confidence 3445775 999999999999999999999999999999999999998854
No 57
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.38 E-value=3.2e-07 Score=89.44 Aligned_cols=61 Identities=21% Similarity=0.212 Sum_probs=52.2
Q ss_pred CchhhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHhcC-CcEEEEcCCCchhHHHhHHHHHHH
Q 028267 130 PLRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLLSD-RECFACAPTGSGKTLAFLCPMLMK 197 (211)
Q Consensus 130 p~~~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il~G-~dvi~~A~TGsGKTlaf~lPil~~ 197 (211)
++.+|.++ ++++.+++.|..+| ..|+++|..+|+.++.+ .+++++|+||||||+ ++|++..
T Consensus 70 ~~~~f~~~----~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~ 131 (773)
T 2xau_A 70 KINPFTGR----EFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVL 131 (773)
T ss_dssp SBCTTTCS----BCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHH
T ss_pred CCCCcccc----CCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHH
Confidence 45567766 99999999999998 79999999999988755 679999999999999 6777733
No 58
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=98.36 E-value=3.6e-07 Score=91.37 Aligned_cols=47 Identities=23% Similarity=0.282 Sum_probs=42.1
Q ss_pred HcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 153 ELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 153 ~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
..+|. |+|+|.++|+.++.|+|++++|+||||||++|++|++..+..
T Consensus 35 ~~~f~-l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~ 81 (997)
T 4a4z_A 35 SWPFE-LDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN 81 (997)
T ss_dssp CCSSC-CCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT
T ss_pred hCCCC-CCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc
Confidence 34664 899999999999999999999999999999999999887653
No 59
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=98.31 E-value=2.9e-07 Score=84.01 Aligned_cols=45 Identities=24% Similarity=0.172 Sum_probs=41.7
Q ss_pred CCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 156 YKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 156 ~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
...|+|+|..+++.++.++|++++++||+|||++|++|++..+..
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~ 155 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN 155 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 448999999999999999999999999999999999999988764
No 60
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=98.30 E-value=1.3e-06 Score=78.89 Aligned_cols=40 Identities=28% Similarity=0.293 Sum_probs=37.7
Q ss_pred CCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHH
Q 028267 158 EPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMK 197 (211)
Q Consensus 158 ~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~ 197 (211)
.|+|+|..+++.++.+.++|++++||+|||++|++++...
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~ 132 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL 132 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc
Confidence 6999999999999999999999999999999999998764
No 61
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.28 E-value=4.7e-07 Score=84.52 Aligned_cols=43 Identities=19% Similarity=0.127 Sum_probs=33.9
Q ss_pred cCCCCCcHHHHHHHh----hHhcCCcEEEEcCCCchhHHHhHHHHHHH
Q 028267 154 LGYKEPTPIQRQAIP----VLLSDRECFACAPTGSGKTLAFLCPMLMK 197 (211)
Q Consensus 154 ~g~~~pt~iQ~~aip----~il~G~dvi~~A~TGsGKTlaf~lPil~~ 197 (211)
.|| .|+|+|..++. .+..|++++++|+||||||++|++|++..
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~ 50 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL 50 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC
Confidence 467 89999999865 45689999999999999999999998764
No 62
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=98.25 E-value=5.4e-07 Score=76.53 Aligned_cols=44 Identities=25% Similarity=0.189 Sum_probs=39.9
Q ss_pred CCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 157 KEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 157 ~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
-.|+++|.++++.++.+.+.|++++||+|||+++++++...+..
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~ 155 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN 155 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc
Confidence 37999999999999998889999999999999999998887753
No 63
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=98.24 E-value=1.4e-06 Score=76.71 Aligned_cols=41 Identities=27% Similarity=0.354 Sum_probs=39.3
Q ss_pred CCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 158 EPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 158 ~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
.|+|+|..+++.++.| ++|++++||+|||++|+++++..+.
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~ 49 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLT 49 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6999999999999999 9999999999999999999999887
No 64
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=98.17 E-value=3.6e-06 Score=85.29 Aligned_cols=58 Identities=22% Similarity=0.310 Sum_probs=47.6
Q ss_pred CCCHHHHHHH-HHcCCCCCcHHHHHHHhhHhc----CC--cEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 142 GCESYLLRNL-AELGYKEPTPIQRQAIPVLLS----DR--ECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 142 ~l~~~ll~~l-~~~g~~~pt~iQ~~aip~il~----G~--dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
.++..+.+.+ ...||. |||+|..||+.++. |+ |+|+|++||+|||++|+++++..+..
T Consensus 587 ~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~ 651 (1151)
T 2eyq_A 587 KHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN 651 (1151)
T ss_dssp CCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 4555666665 445775 79999999999986 66 99999999999999999999887654
No 65
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=98.17 E-value=3.3e-06 Score=70.56 Aligned_cols=40 Identities=28% Similarity=0.293 Sum_probs=36.9
Q ss_pred CCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHH
Q 028267 157 KEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLM 196 (211)
Q Consensus 157 ~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~ 196 (211)
..|+++|..++..++.+.++|++++||+|||++++.++..
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~ 131 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINE 131 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHH
Confidence 4799999999999999999999999999999999887765
No 66
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=97.91 E-value=7.5e-06 Score=77.88 Aligned_cols=33 Identities=30% Similarity=0.234 Sum_probs=29.9
Q ss_pred hhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 168 PVLLSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 168 p~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
..+..|+|+|++||||||||++|++|++..+..
T Consensus 17 ~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~ 49 (620)
T 4a15_A 17 SSLQKSYGVALESPTGSGKTIMALKSALQYSSE 49 (620)
T ss_dssp HHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh
Confidence 566789999999999999999999999998754
No 67
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=97.78 E-value=2.2e-05 Score=73.12 Aligned_cols=44 Identities=25% Similarity=0.276 Sum_probs=35.0
Q ss_pred CCCcHHHHHHHhhHhc----C-CcEEEEcCCCchhHHHhHHHHHHHHhcc
Q 028267 157 KEPTPIQRQAIPVLLS----D-RECFACAPTGSGKTLAFLCPMLMKLRVL 201 (211)
Q Consensus 157 ~~pt~iQ~~aip~il~----G-~dvi~~A~TGsGKTlaf~lPil~~l~~~ 201 (211)
..|+|+|..+|+.++. | ++++++++||||||+++ ++++.+|...
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~-~~~~~~l~~~ 225 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVA-FQISWKLWSA 225 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHH-HHHHHHHHHT
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHH-HHHHHHHHhc
Confidence 3699999999999876 5 66999999999999995 5666666543
No 68
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=97.74 E-value=1.8e-05 Score=73.77 Aligned_cols=32 Identities=41% Similarity=0.272 Sum_probs=28.1
Q ss_pred HHhhHhcCCcEEEEcCCCchhHHHhHHHHHHH
Q 028267 166 AIPVLLSDRECFACAPTGSGKTLAFLCPMLMK 197 (211)
Q Consensus 166 aip~il~G~dvi~~A~TGsGKTlaf~lPil~~ 197 (211)
....+..|+|++++|+||||||++|++|++..
T Consensus 15 v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~ 46 (551)
T 3crv_A 15 VIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV 46 (551)
T ss_dssp HHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHcCCcEEEECCCCccHHHHHHHHHHhC
Confidence 34567789999999999999999999999864
No 69
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=97.67 E-value=4e-05 Score=77.08 Aligned_cols=57 Identities=26% Similarity=0.174 Sum_probs=42.9
Q ss_pred HHHHHHHHHcC-------CCCCcHHHHHHHhhHhc--------------CCcEEEEcCCCchhHHHhHHHHHHHHhccc
Q 028267 145 SYLLRNLAELG-------YKEPTPIQRQAIPVLLS--------------DRECFACAPTGSGKTLAFLCPMLMKLRVLF 202 (211)
Q Consensus 145 ~~ll~~l~~~g-------~~~pt~iQ~~aip~il~--------------G~dvi~~A~TGsGKTlaf~lPil~~l~~~~ 202 (211)
+.++..|...- ...|+|+|..|++.++. +++++++++||||||+++ ++++..+...+
T Consensus 251 ~~ll~~l~~f~~~~~~~~~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~ 328 (1038)
T 2w00_A 251 HTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELD 328 (1038)
T ss_dssp HHHHHHHHHSEEECTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCT
T ss_pred HHHHHHHHhheeeccccccccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcC
Confidence 44555554432 23599999999999875 478999999999999997 78886665433
No 70
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=97.45 E-value=1.5e-05 Score=76.65 Aligned_cols=37 Identities=24% Similarity=0.136 Sum_probs=29.5
Q ss_pred cHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHH
Q 028267 160 TPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLM 196 (211)
Q Consensus 160 t~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~ 196 (211)
++.|...++.+..++|+|++|+||||||++|.+|+++
T Consensus 219 ~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~ 255 (666)
T 3o8b_A 219 FTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA 255 (666)
T ss_dssp CCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH
Confidence 3444444445557889999999999999999999987
No 71
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.37 E-value=0.00039 Score=65.83 Aligned_cols=40 Identities=30% Similarity=0.368 Sum_probs=37.4
Q ss_pred cHHHHHHHhhHhcCCcEEEEcCCCchhH--HHhHHHHHHHHh
Q 028267 160 TPIQRQAIPVLLSDRECFACAPTGSGKT--LAFLCPMLMKLR 199 (211)
Q Consensus 160 t~iQ~~aip~il~G~dvi~~A~TGsGKT--laf~lPil~~l~ 199 (211)
+++|..|++.++.++++++++++||||| ++++++++..+.
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~ 192 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMA 192 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhh
Confidence 7899999999999999999999999999 889999998764
No 72
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=96.99 E-value=0.0011 Score=59.98 Aligned_cols=44 Identities=16% Similarity=0.107 Sum_probs=35.5
Q ss_pred CCCcHHHHHHHhhH----hcCCcEEEEcCCCchhHHHhHHHHHHHHhcc
Q 028267 157 KEPTPIQRQAIPVL----LSDRECFACAPTGSGKTLAFLCPMLMKLRVL 201 (211)
Q Consensus 157 ~~pt~iQ~~aip~i----l~G~dvi~~A~TGsGKTlaf~lPil~~l~~~ 201 (211)
..|+|+|.+++..+ ..|+++|++.+||+|||+.. +.++..+...
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~a-i~~i~~~~~~ 83 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQT-IAVFSDAKKE 83 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHH-HHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHH-HHHHHHHHhc
Confidence 46999999999876 35789999999999999996 4566665543
No 73
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=96.90 E-value=0.00053 Score=66.03 Aligned_cols=35 Identities=23% Similarity=0.213 Sum_probs=25.9
Q ss_pred HHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhcc
Q 028267 163 QRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVL 201 (211)
Q Consensus 163 Q~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~ 201 (211)
|.+.....+.|++++++|+||||||+ +++..+...
T Consensus 145 ~~~p~ar~l~rk~vlv~apTGSGKT~----~al~~l~~~ 179 (677)
T 3rc3_A 145 NWYPDARAMQRKIIFHSGPTNSGKTY----HAIQKYFSA 179 (677)
T ss_dssp GGCHHHHTSCCEEEEEECCTTSSHHH----HHHHHHHHS
T ss_pred hhCHHHHhcCCCEEEEEcCCCCCHHH----HHHHHHHhc
Confidence 33333456799999999999999998 555555543
No 74
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=96.25 E-value=0.0055 Score=59.86 Aligned_cols=43 Identities=33% Similarity=0.396 Sum_probs=37.3
Q ss_pred HcCCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 153 ELGYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 153 ~~g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
..|. .|+++|......+..|+ |+...||+||||+|.+|++-..
T Consensus 71 ~lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnA 113 (822)
T 3jux_A 71 TLGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNA 113 (822)
T ss_dssp HTSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHH
T ss_pred HhCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHH
Confidence 3455 68999999999999998 8899999999999999987543
No 75
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=96.17 E-value=0.0054 Score=61.02 Aligned_cols=45 Identities=16% Similarity=0.021 Sum_probs=37.4
Q ss_pred CCCcHHHHHHHhhHhc--CCcEEEEcCCCchhHHHhHHHHHHHHhcc
Q 028267 157 KEPTPIQRQAIPVLLS--DRECFACAPTGSGKTLAFLCPMLMKLRVL 201 (211)
Q Consensus 157 ~~pt~iQ~~aip~il~--G~dvi~~A~TGsGKTlaf~lPil~~l~~~ 201 (211)
..|+|+|..++..++. +..+|++.+||+|||+.++..+...+...
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g 198 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSG 198 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTS
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhC
Confidence 4689999999998876 45899999999999999987776666543
No 76
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=95.20 E-value=0.023 Score=55.10 Aligned_cols=42 Identities=17% Similarity=0.128 Sum_probs=33.9
Q ss_pred CCCcHHHHHHHhhHh----cCCcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 157 KEPTPIQRQAIPVLL----SDRECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 157 ~~pt~iQ~~aip~il----~G~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
..|.|.|..++..++ .|++.|++.++|+|||+..+..+...+
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~ 280 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLI 280 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHH
Confidence 368899999998765 789999999999999998755444433
No 77
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=95.01 E-value=0.044 Score=51.72 Aligned_cols=53 Identities=19% Similarity=0.195 Sum_probs=39.8
Q ss_pred CCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhcccCCCceEE
Q 028267 156 YKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVLFIPFDYFC 209 (211)
Q Consensus 156 ~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~~~~~~~~ 209 (211)
+..+.+-|..|+-.++.+.-+++++|+|||||.+. .-++..|.......-++|
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~-~~~i~~l~~~~~~~ilv~ 230 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLARQGNGPVLVC 230 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHH-HHHHHHHHTSSSCCEEEE
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHH-HHHHHHHHHcCCCeEEEE
Confidence 45688999999999888888899999999999875 355666654333444444
No 78
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.73 E-value=0.041 Score=49.80 Aligned_cols=51 Identities=16% Similarity=0.176 Sum_probs=37.3
Q ss_pred HHHcCCCCCcHHHHHHHhhHhcC-----CcEEEEcCCCchhHHHhHHHHHHHHhccc
Q 028267 151 LAELGYKEPTPIQRQAIPVLLSD-----RECFACAPTGSGKTLAFLCPMLMKLRVLF 202 (211)
Q Consensus 151 l~~~g~~~pt~iQ~~aip~il~G-----~dvi~~A~TGsGKTlaf~lPil~~l~~~~ 202 (211)
.+-+.|..+++-|..++-.++.. ..+++.|+.|||||.. +.-++..|....
T Consensus 18 ~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~l-l~~~~~~l~~~~ 73 (459)
T 3upu_A 18 GSHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTL-TKFIIEALISTG 73 (459)
T ss_dssp ---CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHH-HHHHHHHHHHTT
T ss_pred cCCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHH-HHHHHHHHHhcC
Confidence 45567999999999999876532 3899999999999954 356666665543
No 79
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=94.22 E-value=0.075 Score=50.20 Aligned_cols=41 Identities=24% Similarity=0.393 Sum_probs=31.8
Q ss_pred CCcHHHHHHHhhHhcCCc-EEEEcCCCchhHHHhHHHHHHHHh
Q 028267 158 EPTPIQRQAIPVLLSDRE-CFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 158 ~pt~iQ~~aip~il~G~d-vi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
.+.+-|..|+-.++..++ .|+++|+|||||.+-+- +|.++.
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~-~I~~l~ 230 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVE-IILQAV 230 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHH-HHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHH-HHHHHH
Confidence 467899999999988776 58899999999987543 444443
No 80
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=94.01 E-value=0.078 Score=51.80 Aligned_cols=44 Identities=20% Similarity=0.343 Sum_probs=35.0
Q ss_pred CCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 156 YKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 156 ~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
+..+.+-|..|+-.++.+.-++++|++|||||.+.+ -++.+|..
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~-~~i~~l~~ 401 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSA-TIVYHLSK 401 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHH-HHHHHHHH
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH-HHHHHHHh
Confidence 456889999999999887778999999999998643 44555543
No 81
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=93.94 E-value=0.1 Score=51.01 Aligned_cols=53 Identities=19% Similarity=0.195 Sum_probs=39.4
Q ss_pred CCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhcccCCCceEE
Q 028267 156 YKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVLFIPFDYFC 209 (211)
Q Consensus 156 ~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~~~~~~~~ 209 (211)
...+.+-|..|+-.++.+.-+++++++|||||.+. .-++..|.......-++|
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti-~~~i~~l~~~~~~~ilv~ 406 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLARQGNGPVLVC 406 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHH-HHHHHHHHTTCSSCEEEE
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHH-HHHHHHHHHcCCCcEEEE
Confidence 45678999999999988888899999999999874 456666654333333333
No 82
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=93.60 E-value=0.083 Score=49.15 Aligned_cols=51 Identities=22% Similarity=0.290 Sum_probs=36.0
Q ss_pred CCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhccc-CCCceEE
Q 028267 157 KEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVLF-IPFDYFC 209 (211)
Q Consensus 157 ~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~-~~~~~~~ 209 (211)
..+++-|..++-. .+..+++.|+.|||||.+.+-=+...+.... .+..+++
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ 59 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEE
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEE
Confidence 4689999999863 3566899999999999987665655555422 3344444
No 83
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=93.51 E-value=0.083 Score=49.97 Aligned_cols=44 Identities=25% Similarity=0.366 Sum_probs=35.4
Q ss_pred CCcHHHHHHHhhHh---------cCCcEEEEcCCCchhHHHhHHHHHHHHhcc
Q 028267 158 EPTPIQRQAIPVLL---------SDRECFACAPTGSGKTLAFLCPMLMKLRVL 201 (211)
Q Consensus 158 ~pt~iQ~~aip~il---------~G~dvi~~A~TGsGKTlaf~lPil~~l~~~ 201 (211)
.|.|+|..++..++ .+..+|++..||+|||+..+..+...+...
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~ 107 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQS 107 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCC
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhC
Confidence 68899999998774 457899999999999999876666655543
No 84
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=93.26 E-value=0.09 Score=53.52 Aligned_cols=51 Identities=24% Similarity=0.135 Sum_probs=40.8
Q ss_pred CCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhccc---CCCceEEe
Q 028267 158 EPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVLF---IPFDYFCE 210 (211)
Q Consensus 158 ~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~---~~~~~~~~ 210 (211)
.+|+-|..+|-.. +.+++|.|.-|||||.+.+-=++..|.... .+..++|+
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~ 63 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVV 63 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEE
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEE
Confidence 5799999998654 889999999999999998877888877643 44566664
No 85
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=92.78 E-value=0.16 Score=47.76 Aligned_cols=42 Identities=14% Similarity=0.071 Sum_probs=34.1
Q ss_pred CCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 158 EPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 158 ~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
.+++-|..++..++.+..+++.++.|||||... .-++..+..
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~ 230 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAES 230 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHh
Confidence 578999999999999999999999999999753 345554443
No 86
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=91.27 E-value=0.3 Score=46.74 Aligned_cols=52 Identities=17% Similarity=0.225 Sum_probs=37.7
Q ss_pred CCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhcc-cCCCceEEe
Q 028267 157 KEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVL-FIPFDYFCE 210 (211)
Q Consensus 157 ~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~-~~~~~~~~~ 210 (211)
..+++-|.+++-. .+..+++.|..|||||.+.+-=+...+... ..+..++|+
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~v 62 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAI 62 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEE
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEE
Confidence 4689999998865 346789999999999998776666666542 245556554
No 87
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=90.19 E-value=0.33 Score=37.47 Aligned_cols=26 Identities=19% Similarity=0.209 Sum_probs=19.3
Q ss_pred cCCcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 172 SDRECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
.|..+++.+++|+|||.... -+...+
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~-~i~~~~ 62 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAV-ATLKAI 62 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHH-HHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH-HHHHHH
Confidence 48899999999999997543 334444
No 88
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=88.90 E-value=0.28 Score=36.88 Aligned_cols=20 Identities=15% Similarity=0.074 Sum_probs=17.0
Q ss_pred HhcCCcEEEEcCCCchhHHH
Q 028267 170 LLSDRECFACAPTGSGKTLA 189 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTla 189 (211)
+..+..|++.+++|||||..
T Consensus 24 ~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHH
T ss_pred hCCCCcEEEECCCCccHHHH
Confidence 45678899999999999975
No 89
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=88.40 E-value=0.11 Score=44.24 Aligned_cols=56 Identities=13% Similarity=0.121 Sum_probs=31.3
Q ss_pred hhhhcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 134 FVKLSSRFGCESYLLRNLAEL---GYKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 134 f~~l~~~~~l~~~ll~~l~~~---g~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
|+.++.+|-+++.++..+... .|-. ++.+-..+.+++.+|+|+|||... -.+...+
T Consensus 2 ~~~~~~~~y~~~~~~~~~~~~~~k~~l~--------~~~~~~p~~lLl~GppGtGKT~la-~aiA~~l 60 (293)
T 3t15_A 2 LDNKLDGFYIAPAFMDKLVVHITKNFLK--------LPNIKVPLILGIWGGKGQGKSFQC-ELVFRKM 60 (293)
T ss_dssp CCCEETTEECCHHHHHHHHHHHHHTTSC--------CTTCCCCSEEEEEECTTSCHHHHH-HHHHHHH
T ss_pred cccccCcccCCHHHHHHHHHHHHHHHHh--------cCCCCCCeEEEEECCCCCCHHHHH-HHHHHHh
Confidence 455556667777766654321 1111 111222356889999999999843 3344433
No 90
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=88.24 E-value=0.39 Score=36.06 Aligned_cols=21 Identities=14% Similarity=0.246 Sum_probs=17.6
Q ss_pred HhcCCcEEEEcCCCchhHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf 190 (211)
...+..|++.+++|||||...
T Consensus 21 a~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHH
T ss_pred hCCCCCEEEECCCCCCHHHHH
Confidence 346788999999999999854
No 91
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=88.01 E-value=0.3 Score=43.34 Aligned_cols=31 Identities=16% Similarity=0.169 Sum_probs=23.1
Q ss_pred hHhcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 169 VLLSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 169 ~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
.-....++++.|+||||||..+ -+++.++..
T Consensus 49 ~~~~~~h~~i~G~tGsGKs~~~-~~li~~~~~ 79 (437)
T 1e9r_A 49 RDAEPRHLLVNGATGTGKSVLL-RELAYTGLL 79 (437)
T ss_dssp GGGGGGCEEEEECTTSSHHHHH-HHHHHHHHH
T ss_pred cccCcceEEEECCCCCCHHHHH-HHHHHHHHH
Confidence 3344678999999999999974 556666654
No 92
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=87.54 E-value=0.29 Score=40.40 Aligned_cols=20 Identities=30% Similarity=0.453 Sum_probs=16.5
Q ss_pred hcCCcEEEEcCCCchhHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf 190 (211)
..++.+++.+++|+|||...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHH
Confidence 34678999999999999743
No 93
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=86.53 E-value=0.56 Score=37.42 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=18.3
Q ss_pred CCcEEEEcCCCchhHHHhHHHHHHH
Q 028267 173 DRECFACAPTGSGKTLAFLCPMLMK 197 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf~lPil~~ 197 (211)
|.=+++.|++|+|||. |++-++..
T Consensus 30 G~l~~i~G~pG~GKT~-l~l~~~~~ 53 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTT-FAAQFIYK 53 (251)
T ss_dssp TCEEEEECCTTSSHHH-HHHHHHHH
T ss_pred CeEEEEEeCCCCCHHH-HHHHHHHH
Confidence 5679999999999996 55555444
No 94
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=85.74 E-value=1 Score=38.54 Aligned_cols=17 Identities=29% Similarity=0.528 Sum_probs=15.0
Q ss_pred CcEEEEcCCCchhHHHh
Q 028267 174 RECFACAPTGSGKTLAF 190 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf 190 (211)
+.+++.+|+|||||+..
T Consensus 46 ~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLA 62 (322)
T ss_dssp SEEEEESSSSSCHHHHH
T ss_pred ceEEEECCCCccHHHHH
Confidence 67999999999999853
No 95
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=85.26 E-value=0.45 Score=45.30 Aligned_cols=43 Identities=30% Similarity=0.346 Sum_probs=32.3
Q ss_pred cCCCCCcHHHHHHHhhHhc----C-CcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 154 LGYKEPTPIQRQAIPVLLS----D-RECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 154 ~g~~~pt~iQ~~aip~il~----G-~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
.|| .|++.|..+|..+.. | +..++.+.||||||++++ -++.++
T Consensus 5 ~~~-~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a-~~~~~~ 52 (664)
T 1c4o_A 5 RGP-SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMA-KVIEAL 52 (664)
T ss_dssp CSC-CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHH-HHHHHH
T ss_pred CCC-CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHH-HHHHHh
Confidence 367 899999999986653 3 356788999999999775 345554
No 96
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=84.31 E-value=1.7 Score=36.98 Aligned_cols=47 Identities=17% Similarity=0.227 Sum_probs=33.6
Q ss_pred HHHHHHHHcCCCCCcHHHHHHH-hhHhcCC-----cEEEEcCCCchhHHHhHHHHHH
Q 028267 146 YLLRNLAELGYKEPTPIQRQAI-PVLLSDR-----ECFACAPTGSGKTLAFLCPMLM 196 (211)
Q Consensus 146 ~ll~~l~~~g~~~pt~iQ~~ai-p~il~G~-----dvi~~A~TGsGKTlaf~lPil~ 196 (211)
.+.+.|+-+||. |++...+ -..+.|+ .|++.+|+|||||+.+. .+..
T Consensus 74 ~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~-ala~ 126 (267)
T 1u0j_A 74 RIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE-AIAH 126 (267)
T ss_dssp HHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH-HHHH
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH-HHHh
Confidence 678888888886 6665543 3445553 59999999999999764 4444
No 97
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.20 E-value=0.45 Score=43.33 Aligned_cols=55 Identities=24% Similarity=0.363 Sum_probs=31.9
Q ss_pred CCchhhhhhcccCCCCHHHHHHHHHcC---CCCCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHh
Q 028267 129 SPLRTFVKLSSRFGCESYLLRNLAELG---YKEPTPIQRQAIPVLLSDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 129 ~p~~~f~~l~~~~~l~~~ll~~l~~~g---~~~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf 190 (211)
.|-.+|+++ +--+...+.|...= +.+|--.+..-+ ---+.++..+|+|||||+..
T Consensus 175 ~p~~t~~di----gGl~~~k~~l~e~v~~pl~~pe~f~~~g~---~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 175 KPTETYSDV----GGLDKQIEELVEAIVLPMKRADKFKDMGI---RAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SCSCCGGGS----CSCHHHHHHHHHHTHHHHHCSHHHHHHCC---CCCCEEEEESCTTSSHHHHH
T ss_pred CCCCChHhc----CcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeeEEECcCCCCHHHHH
Confidence 355678887 55556666665421 112222222211 12378999999999999853
No 98
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=83.78 E-value=1.2 Score=41.22 Aligned_cols=41 Identities=20% Similarity=0.089 Sum_probs=26.3
Q ss_pred HHHHHHcCCCCCcHHHHHHHh-hHhcCCcEEEEcCCCchhHHHh
Q 028267 148 LRNLAELGYKEPTPIQRQAIP-VLLSDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 148 l~~l~~~g~~~pt~iQ~~aip-~il~G~dvi~~A~TGsGKTlaf 190 (211)
+..|...|.- ++.+..-+. .+..|..++++++||||||...
T Consensus 236 ~~~l~~~G~~--~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL 277 (511)
T 2oap_1 236 PIDLIEKGTV--PSGVLAYLWLAIEHKFSAIVVGETASGKTTTL 277 (511)
T ss_dssp HHHHHHTTSS--CHHHHHHHHHHHHTTCCEEEEESTTSSHHHHH
T ss_pred hhhHHhcCCC--CHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 4445566632 233333232 3567889999999999999754
No 99
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=83.46 E-value=0.43 Score=40.38 Aligned_cols=19 Identities=32% Similarity=0.522 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCchhHHHh
Q 028267 172 SDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf 190 (211)
.++.+++.+++|||||+..
T Consensus 48 ~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCSEEEEECSSSSSHHHHH
T ss_pred CCceEEEECCCCcCHHHHH
Confidence 4678999999999999853
No 100
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=83.07 E-value=0.95 Score=38.64 Aligned_cols=26 Identities=27% Similarity=0.324 Sum_probs=19.0
Q ss_pred CCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 173 DRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
|+.+++.+++|+|||... --+...+.
T Consensus 70 ~~~vLl~GppGtGKT~la-~~la~~l~ 95 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIA-MGMAQALG 95 (368)
T ss_dssp TCEEEEEESTTSSHHHHH-HHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHH-HHHHHHhc
Confidence 568999999999999853 34444443
No 101
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=82.64 E-value=1.6 Score=37.57 Aligned_cols=19 Identities=42% Similarity=0.569 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCchhHHHh
Q 028267 172 SDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf 190 (211)
.+..+++.+|+|||||...
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4578999999999999853
No 102
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=82.50 E-value=2.3 Score=33.07 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=18.9
Q ss_pred CcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 174 RECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
..+++.+++|+|||... .-+...+.
T Consensus 55 ~~~~l~G~~GtGKT~la-~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL-AAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHH-HHHHHHHH
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHH
Confidence 78999999999999853 34555554
No 103
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=82.13 E-value=1.6 Score=37.01 Aligned_cols=17 Identities=24% Similarity=0.438 Sum_probs=14.9
Q ss_pred CcEEEEcCCCchhHHHh
Q 028267 174 RECFACAPTGSGKTLAF 190 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf 190 (211)
+.+++.+++|||||+..
T Consensus 52 ~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CEEEEECSSSSCHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 57999999999999753
No 104
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=81.41 E-value=1.7 Score=35.71 Aligned_cols=19 Identities=32% Similarity=0.459 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCchhHHHh
Q 028267 172 SDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf 190 (211)
.+..+++.+++|+|||...
T Consensus 49 ~~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 4678999999999999743
No 105
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=81.41 E-value=1.1 Score=38.37 Aligned_cols=28 Identities=18% Similarity=0.120 Sum_probs=20.7
Q ss_pred cCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 172 SDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
.|.=++++|++|+|||. |++-++..+..
T Consensus 67 ~G~l~li~G~pG~GKTt-l~l~ia~~~a~ 94 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTA-FALKQAKNMSD 94 (315)
T ss_dssp TTCEEEEECCTTSSHHH-HHHHHHHHHHT
T ss_pred CCcEEEEEeCCCCCHHH-HHHHHHHHHHH
Confidence 45669999999999995 56666655543
No 106
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=81.17 E-value=0.74 Score=34.51 Aligned_cols=25 Identities=16% Similarity=0.189 Sum_probs=18.3
Q ss_pred CCcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 173 DRECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
+..+++.+++|+|||... --+...+
T Consensus 43 ~~~~ll~G~~G~GKT~l~-~~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV-EGLAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHH-HHHHHHH
T ss_pred CCceEEECCCCCCHHHHH-HHHHHHH
Confidence 467999999999999753 3444444
No 107
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=81.15 E-value=0.7 Score=40.24 Aligned_cols=28 Identities=11% Similarity=0.080 Sum_probs=21.0
Q ss_pred cCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 172 SDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
.+..+++.+++|||||+.. --++..|..
T Consensus 44 ~~~~lli~GpPGTGKT~~v-~~v~~~L~~ 71 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLV-NDVMDELIT 71 (318)
T ss_dssp CCCEEEEECCCSHHHHHHH-HHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH-HHHHHHHHH
Confidence 3578999999999999864 345566643
No 108
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=81.07 E-value=1.8 Score=35.20 Aligned_cols=18 Identities=33% Similarity=0.586 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCchhHHHh
Q 028267 173 DRECFACAPTGSGKTLAF 190 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf 190 (211)
.+.+++.+++|||||...
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 356999999999999743
No 109
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=80.00 E-value=1.1 Score=37.87 Aligned_cols=21 Identities=19% Similarity=0.165 Sum_probs=17.5
Q ss_pred hHhcCCcEEEEcCCCchhHHH
Q 028267 169 VLLSDRECFACAPTGSGKTLA 189 (211)
Q Consensus 169 ~il~G~dvi~~A~TGsGKTla 189 (211)
.+..|..+++.+++|+|||..
T Consensus 42 ~l~~~~~vll~G~pGtGKT~l 62 (331)
T 2r44_A 42 GICTGGHILLEGVPGLAKTLS 62 (331)
T ss_dssp HHHHTCCEEEESCCCHHHHHH
T ss_pred HHHcCCeEEEECCCCCcHHHH
Confidence 345578999999999999964
No 110
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=79.95 E-value=2.1 Score=39.43 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=21.3
Q ss_pred HHHHhhHhcCCcEEEEcCCCchhHHH
Q 028267 164 RQAIPVLLSDRECFACAPTGSGKTLA 189 (211)
Q Consensus 164 ~~aip~il~G~dvi~~A~TGsGKTla 189 (211)
...+-.+..|..|++.+++|+|||..
T Consensus 32 ~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 32 RLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHHhcCCeeEeecCchHHHHHH
Confidence 44455667889999999999999984
No 111
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=79.64 E-value=1.4 Score=36.03 Aligned_cols=19 Identities=26% Similarity=0.412 Sum_probs=16.2
Q ss_pred hcCCcEEEEcCCCchhHHH
Q 028267 171 LSDRECFACAPTGSGKTLA 189 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTla 189 (211)
..+..+++.+++|||||..
T Consensus 27 ~~~~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELI 45 (265)
T ss_dssp TSCSCEEEECCTTSCHHHH
T ss_pred CCCCCEEEECCCCCcHHHH
Confidence 3467899999999999974
No 112
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=79.41 E-value=2.7 Score=37.59 Aligned_cols=28 Identities=18% Similarity=0.165 Sum_probs=21.3
Q ss_pred cCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 172 SDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
.|.=+++.|++|+|||. |++-++..+..
T Consensus 199 ~G~l~ii~G~pg~GKT~-lal~ia~~~a~ 226 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTA-FALTIAQNAAL 226 (444)
T ss_dssp TTCEEEEEECTTSCHHH-HHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHH-HHHHHHHHHHH
Confidence 34568899999999995 66777766654
No 113
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=79.26 E-value=0.8 Score=34.41 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=18.2
Q ss_pred CCcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 173 DRECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
+..+++.+++|+|||... .-+...+
T Consensus 43 ~~~vll~G~~G~GKT~la-~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV-EGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHH-HHHHHHH
T ss_pred CCceEEECCCCCCHHHHH-HHHHHHH
Confidence 467999999999999643 3344444
No 114
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=78.62 E-value=0.36 Score=39.87 Aligned_cols=17 Identities=29% Similarity=0.249 Sum_probs=14.9
Q ss_pred CcEEEEcCCCchhHHHh
Q 028267 174 RECFACAPTGSGKTLAF 190 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf 190 (211)
+.+++.+++|+|||...
T Consensus 65 ~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 57999999999999854
No 115
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=78.08 E-value=1.5 Score=34.45 Aligned_cols=27 Identities=15% Similarity=0.219 Sum_probs=19.5
Q ss_pred cCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 172 SDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
.++.+++.+++|+|||... --+...+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la-~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI-HAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH-HHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH-HHHHHHHH
Confidence 4678999999999999843 33444443
No 116
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.88 E-value=1.2 Score=40.15 Aligned_cols=18 Identities=33% Similarity=0.549 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCchhHHHh
Q 028267 173 DRECFACAPTGSGKTLAF 190 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf 190 (211)
-+.++..+|+|||||+..
T Consensus 182 prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CCCEEEESCSSSSHHHHH
T ss_pred CCceEEeCCCCCCHHHHH
Confidence 378999999999999853
No 117
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=77.85 E-value=0.64 Score=39.07 Aligned_cols=16 Identities=38% Similarity=0.588 Sum_probs=13.9
Q ss_pred cEEEEcCCCchhHHHh
Q 028267 175 ECFACAPTGSGKTLAF 190 (211)
Q Consensus 175 dvi~~A~TGsGKTlaf 190 (211)
.+++.+|+|||||...
T Consensus 46 GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLA 61 (274)
T ss_dssp EEEEESSTTSCHHHHH
T ss_pred eEEEECCCCCcHHHHH
Confidence 4999999999999854
No 118
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=77.84 E-value=1.8 Score=34.36 Aligned_cols=29 Identities=17% Similarity=0.151 Sum_probs=20.5
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+..|.-+++.+++|+|||... +-++..+.
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~-~~~~~~~~ 48 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFS-QQFLWNGL 48 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHH-HHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHH-HHHHHHHH
Confidence 345788999999999999853 34444433
No 119
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.15 E-value=0.9 Score=41.35 Aligned_cols=18 Identities=33% Similarity=0.567 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCchhHHHh
Q 028267 173 DRECFACAPTGSGKTLAF 190 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf 190 (211)
-+.+|..+|+|||||+..
T Consensus 215 prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 378999999999999854
No 120
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=76.97 E-value=1.2 Score=33.91 Aligned_cols=19 Identities=16% Similarity=0.324 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCchhHHHh
Q 028267 172 SDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf 190 (211)
.|..+++.+++|+|||...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5888999999999998743
No 121
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=76.93 E-value=1.1 Score=36.31 Aligned_cols=17 Identities=29% Similarity=0.460 Sum_probs=14.1
Q ss_pred CcEEEEcCCCchhHHHh
Q 028267 174 RECFACAPTGSGKTLAF 190 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf 190 (211)
+.+++.+++|||||...
T Consensus 50 ~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 34999999999999743
No 122
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=76.93 E-value=1 Score=37.42 Aligned_cols=18 Identities=22% Similarity=0.156 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCchhHHHh
Q 028267 173 DRECFACAPTGSGKTLAF 190 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf 190 (211)
+..+++.+++|+|||...
T Consensus 67 ~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 467999999999999754
No 123
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=76.74 E-value=1.4 Score=39.10 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=19.6
Q ss_pred HhhHhcCCc--EEEEcCCCchhHHHh
Q 028267 167 IPVLLSDRE--CFACAPTGSGKTLAF 190 (211)
Q Consensus 167 ip~il~G~d--vi~~A~TGsGKTlaf 190 (211)
+..++.|.+ |++-++||||||.+.
T Consensus 97 v~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 97 VSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 445688875 888999999999875
No 124
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=76.52 E-value=1.5 Score=38.24 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=19.2
Q ss_pred hhHhcCCc--EEEEcCCCchhHHHh
Q 028267 168 PVLLSDRE--CFACAPTGSGKTLAF 190 (211)
Q Consensus 168 p~il~G~d--vi~~A~TGsGKTlaf 190 (211)
..++.|.+ |++-++||||||.+.
T Consensus 71 ~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 71 KDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCeEEEEEECCCCCCCceEe
Confidence 45678876 888999999999986
No 125
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=76.47 E-value=2.8 Score=38.91 Aligned_cols=27 Identities=19% Similarity=0.342 Sum_probs=19.6
Q ss_pred cCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 172 SDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
.+.++++.+.||||||.+.- .++..|.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~-~li~sLl 192 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVN-AMILSML 192 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHH-HHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHH-HHHHHHH
Confidence 35789999999999998543 4444443
No 126
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=76.29 E-value=1.4 Score=38.91 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=18.9
Q ss_pred hhHhcCCc--EEEEcCCCchhHHHh
Q 028267 168 PVLLSDRE--CFACAPTGSGKTLAF 190 (211)
Q Consensus 168 p~il~G~d--vi~~A~TGsGKTlaf 190 (211)
..++.|.+ |++-++||||||.+.
T Consensus 88 ~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 88 DKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hHhhCCCceEEEEecCCCCCCCeEE
Confidence 44678876 788999999999985
No 127
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=75.78 E-value=3.5 Score=36.35 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=19.2
Q ss_pred hhHhcCCc--EEEEcCCCchhHHHh
Q 028267 168 PVLLSDRE--CFACAPTGSGKTLAF 190 (211)
Q Consensus 168 p~il~G~d--vi~~A~TGsGKTlaf 190 (211)
..++.|.+ |++-++||||||.+.
T Consensus 86 ~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 86 QNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHhCCceeEEEeeCCCCCCCceEE
Confidence 45678876 688899999999987
No 128
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=75.70 E-value=1.6 Score=38.27 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=19.3
Q ss_pred HhhHhcCCc--EEEEcCCCchhHHHh
Q 028267 167 IPVLLSDRE--CFACAPTGSGKTLAF 190 (211)
Q Consensus 167 ip~il~G~d--vi~~A~TGsGKTlaf 190 (211)
+..++.|.+ |++-++||||||.+.
T Consensus 76 v~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 76 LEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhhcCeeEEEecccCCCceEee
Confidence 345678876 788899999999885
No 129
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=75.63 E-value=3.2 Score=37.24 Aligned_cols=18 Identities=28% Similarity=0.403 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCchhHHHh
Q 028267 173 DRECFACAPTGSGKTLAF 190 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf 190 (211)
.+.+++.+|+|||||+..
T Consensus 167 ~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 478999999999999853
No 130
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=75.39 E-value=1.7 Score=38.63 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=19.1
Q ss_pred hhHhcCCc--EEEEcCCCchhHHHh
Q 028267 168 PVLLSDRE--CFACAPTGSGKTLAF 190 (211)
Q Consensus 168 p~il~G~d--vi~~A~TGsGKTlaf 190 (211)
..++.|.+ |++-++||||||.+.
T Consensus 78 ~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 78 TDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCceEEEeecCCCCCCceEE
Confidence 34678875 788999999999986
No 131
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=75.14 E-value=2.2 Score=37.58 Aligned_cols=25 Identities=36% Similarity=0.484 Sum_probs=21.0
Q ss_pred HHhhHhcCCc--EEEEcCCCchhHHHh
Q 028267 166 AIPVLLSDRE--CFACAPTGSGKTLAF 190 (211)
Q Consensus 166 aip~il~G~d--vi~~A~TGsGKTlaf 190 (211)
.+..++.|.+ |++-++||||||.+.
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 4567789976 788899999999987
No 132
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=75.06 E-value=1.7 Score=38.39 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=19.0
Q ss_pred hhHhcCCc--EEEEcCCCchhHHHh
Q 028267 168 PVLLSDRE--CFACAPTGSGKTLAF 190 (211)
Q Consensus 168 p~il~G~d--vi~~A~TGsGKTlaf 190 (211)
..++.|.+ |++-++||||||.+.
T Consensus 74 ~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 74 DDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCcceEEEECCCCCCcceEe
Confidence 34678875 788999999999986
No 133
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=75.03 E-value=1.9 Score=37.99 Aligned_cols=25 Identities=36% Similarity=0.510 Sum_probs=20.7
Q ss_pred HHhhHhcCCc--EEEEcCCCchhHHHh
Q 028267 166 AIPVLLSDRE--CFACAPTGSGKTLAF 190 (211)
Q Consensus 166 aip~il~G~d--vi~~A~TGsGKTlaf 190 (211)
.+..++.|.+ |++-++||||||.+.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 4566788976 788999999999886
No 134
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=75.01 E-value=2.9 Score=37.51 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=18.8
Q ss_pred cCCcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 172 SDRECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
.++.++..+|+|||||... ..+...+
T Consensus 62 ~~~~iLl~GppGtGKT~la-~ala~~l 87 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALA-LAIAQEL 87 (456)
T ss_dssp TTCEEEEECCTTSSHHHHH-HHHHHHH
T ss_pred CCCeEEEECCCcCCHHHHH-HHHHHHh
Confidence 3478999999999999754 2334433
No 135
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=74.92 E-value=1.8 Score=37.88 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=20.4
Q ss_pred HHhhHhcCCc--EEEEcCCCchhHHHh
Q 028267 166 AIPVLLSDRE--CFACAPTGSGKTLAF 190 (211)
Q Consensus 166 aip~il~G~d--vi~~A~TGsGKTlaf 190 (211)
.+..++.|.+ |++-++||||||.+.
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 3456788976 788999999999886
No 136
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=74.90 E-value=1.9 Score=38.72 Aligned_cols=25 Identities=36% Similarity=0.510 Sum_probs=20.5
Q ss_pred HHhhHhcCCc--EEEEcCCCchhHHHh
Q 028267 166 AIPVLLSDRE--CFACAPTGSGKTLAF 190 (211)
Q Consensus 166 aip~il~G~d--vi~~A~TGsGKTlaf 190 (211)
.+..++.|.+ |++-++||||||.+.
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 4456789976 788899999999986
No 137
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=74.80 E-value=1.7 Score=39.16 Aligned_cols=25 Identities=40% Similarity=0.508 Sum_probs=20.5
Q ss_pred HHhhHhcCCc--EEEEcCCCchhHHHh
Q 028267 166 AIPVLLSDRE--CFACAPTGSGKTLAF 190 (211)
Q Consensus 166 aip~il~G~d--vi~~A~TGsGKTlaf 190 (211)
.+..++.|.+ |++-++||||||.+.
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 4556788976 788899999999986
No 138
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=74.76 E-value=1.8 Score=38.43 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=18.9
Q ss_pred hhHhcCCc--EEEEcCCCchhHHHh
Q 028267 168 PVLLSDRE--CFACAPTGSGKTLAF 190 (211)
Q Consensus 168 p~il~G~d--vi~~A~TGsGKTlaf 190 (211)
..++.|.+ |++-++||||||.+.
T Consensus 83 ~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 83 QHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhcCCeeEEEEeCCCCCCCceEe
Confidence 34678875 788999999999886
No 139
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=74.63 E-value=1.8 Score=38.20 Aligned_cols=23 Identities=35% Similarity=0.513 Sum_probs=18.8
Q ss_pred hhHhcCCc--EEEEcCCCchhHHHh
Q 028267 168 PVLLSDRE--CFACAPTGSGKTLAF 190 (211)
Q Consensus 168 p~il~G~d--vi~~A~TGsGKTlaf 190 (211)
..++.|.+ |++-++||||||.+.
T Consensus 83 ~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 83 DAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCceeEEeecCCCCCCCEEe
Confidence 34578865 788999999999986
No 140
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=74.62 E-value=3.7 Score=35.44 Aligned_cols=18 Identities=33% Similarity=0.495 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCchhHHHh
Q 028267 173 DRECFACAPTGSGKTLAF 190 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf 190 (211)
.+.+++.+++|+|||...
T Consensus 117 ~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CSEEEEESSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 578999999999999854
No 141
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=74.59 E-value=1.8 Score=38.27 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=19.1
Q ss_pred hhHhcCCc--EEEEcCCCchhHHHh
Q 028267 168 PVLLSDRE--CFACAPTGSGKTLAF 190 (211)
Q Consensus 168 p~il~G~d--vi~~A~TGsGKTlaf 190 (211)
..++.|.+ |++-++||||||.+.
T Consensus 99 ~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 99 RSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHhCCCceEEEEeCCCCCCceeee
Confidence 45678875 788999999999986
No 142
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=74.22 E-value=1.7 Score=38.65 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=18.7
Q ss_pred hhHhcCCc--EEEEcCCCchhHHHh
Q 028267 168 PVLLSDRE--CFACAPTGSGKTLAF 190 (211)
Q Consensus 168 p~il~G~d--vi~~A~TGsGKTlaf 190 (211)
..++.|.+ |++-++||||||.+.
T Consensus 95 ~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 95 DSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHhCCCeeeEEeecCCCCCCCEeE
Confidence 35678875 778999999999884
No 143
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=74.19 E-value=1.4 Score=36.48 Aligned_cols=18 Identities=33% Similarity=0.530 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCchhHHHh
Q 028267 173 DRECFACAPTGSGKTLAF 190 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf 190 (211)
++.+++.+++|||||...
T Consensus 54 ~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 578999999999999854
No 144
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=73.99 E-value=1.7 Score=38.73 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=20.2
Q ss_pred HHhhHhcCCc--EEEEcCCCchhHHHh
Q 028267 166 AIPVLLSDRE--CFACAPTGSGKTLAF 190 (211)
Q Consensus 166 aip~il~G~d--vi~~A~TGsGKTlaf 190 (211)
.+..++.|.+ |++-++||||||.+.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 3456678975 778899999999986
No 145
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=73.93 E-value=1.5 Score=35.79 Aligned_cols=18 Identities=33% Similarity=0.576 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCchhHHHh
Q 028267 173 DRECFACAPTGSGKTLAF 190 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf 190 (211)
.+.+++.+++|||||...
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 356899999999999854
No 146
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=73.86 E-value=2.3 Score=37.51 Aligned_cols=29 Identities=17% Similarity=0.210 Sum_probs=22.6
Q ss_pred cCCcEEEEcCCCchhHHHhHHHHHHHHhcc
Q 028267 172 SDRECFACAPTGSGKTLAFLCPMLMKLRVL 201 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf~lPil~~l~~~ 201 (211)
.|.-+++.+++|+|||. |++.++..+...
T Consensus 73 ~G~li~I~G~pGsGKTt-lal~la~~~~~~ 101 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTT-LALAIVAQAQKA 101 (366)
T ss_dssp TTSEEEEEESTTSSHHH-HHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCChHH-HHHHHHHHHHHC
Confidence 36678899999999995 667777776543
No 147
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=73.74 E-value=1.7 Score=38.44 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=19.2
Q ss_pred HhhHhcCCc--EEEEcCCCchhHHHh
Q 028267 167 IPVLLSDRE--CFACAPTGSGKTLAF 190 (211)
Q Consensus 167 ip~il~G~d--vi~~A~TGsGKTlaf 190 (211)
+..++.|.+ |++-++||||||.+.
T Consensus 81 v~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 81 LDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred HHHHhCCCceEEEEeCCCCCCCceEE
Confidence 345678875 788999999999875
No 148
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.73 E-value=1.3 Score=40.12 Aligned_cols=18 Identities=33% Similarity=0.626 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCchhHHHh
Q 028267 173 DRECFACAPTGSGKTLAF 190 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf 190 (211)
.+.++..+|+|||||+..
T Consensus 206 prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CCEEEEESCTTTTHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 367999999999999853
No 149
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=73.72 E-value=1.5 Score=35.27 Aligned_cols=17 Identities=35% Similarity=0.608 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCchhHHH
Q 028267 173 DRECFACAPTGSGKTLA 189 (211)
Q Consensus 173 G~dvi~~A~TGsGKTla 189 (211)
.+.+++.+++|+|||..
T Consensus 39 ~~~vll~G~~GtGKT~l 55 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLL 55 (262)
T ss_dssp CCEEEEESCTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 46799999999999974
No 150
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=73.62 E-value=4.9 Score=37.35 Aligned_cols=45 Identities=16% Similarity=0.050 Sum_probs=34.5
Q ss_pred CCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhccc
Q 028267 158 EPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRVLF 202 (211)
Q Consensus 158 ~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~~~ 202 (211)
.|+|.|...+-.+...+-+++..+.|+|||...+.-++-.+...+
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~ 207 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK 207 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSS
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCC
Confidence 578899888776655677899999999999988766665555444
No 151
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=73.52 E-value=2 Score=37.55 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=18.5
Q ss_pred hHhcCCcEEEEcCCCchhHHHh
Q 028267 169 VLLSDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 169 ~il~G~dvi~~A~TGsGKTlaf 190 (211)
.+..|.-++++++||||||..+
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTLM 192 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHHH
T ss_pred HHhcCCEEEEECCCCCCHHHHH
Confidence 3567899999999999999843
No 152
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=73.48 E-value=2.6 Score=37.92 Aligned_cols=26 Identities=31% Similarity=0.445 Sum_probs=18.2
Q ss_pred cCCcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 172 SDRECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
.|.-++++++||||||..+. -++..+
T Consensus 166 ~ggii~I~GpnGSGKTTlL~-allg~l 191 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLY-AGLQEL 191 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHH-HHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHH-HHHhhc
Confidence 34558899999999998543 344444
No 153
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.43 E-value=1.2 Score=40.96 Aligned_cols=18 Identities=33% Similarity=0.578 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCchhHHHh
Q 028267 173 DRECFACAPTGSGKTLAF 190 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf 190 (211)
-+.||..+|+|||||+..
T Consensus 243 prGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CSEEEECSCTTSSHHHHH
T ss_pred CCceEeeCCCCCcHHHHH
Confidence 478999999999999853
No 154
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=73.40 E-value=1.9 Score=38.02 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=19.1
Q ss_pred hhHhcCCc--EEEEcCCCchhHHHh
Q 028267 168 PVLLSDRE--CFACAPTGSGKTLAF 190 (211)
Q Consensus 168 p~il~G~d--vi~~A~TGsGKTlaf 190 (211)
..++.|.+ |++-++||||||.+.
T Consensus 71 ~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 71 DSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHcCCccceeeecCCCCCCCeEE
Confidence 45678865 788999999999987
No 155
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=73.18 E-value=1.8 Score=38.52 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=18.7
Q ss_pred hhHhcCCc--EEEEcCCCchhHHHh
Q 028267 168 PVLLSDRE--CFACAPTGSGKTLAF 190 (211)
Q Consensus 168 p~il~G~d--vi~~A~TGsGKTlaf 190 (211)
..++.|.+ |++-++||||||.+.
T Consensus 94 ~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 94 EEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCceEEEEeecCCCCCcceec
Confidence 34678875 788999999999885
No 156
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=73.07 E-value=5.7 Score=32.72 Aligned_cols=51 Identities=14% Similarity=0.165 Sum_probs=30.0
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHhhHhcC----CcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 146 YLLRNLAELGYKEPTPIQRQAIPVLLSD----RECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 146 ~ll~~l~~~g~~~pt~iQ~~aip~il~G----~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
.+.+.|+-.|+. +... ..++-.++.| +.+++.+|+|||||... ..++..+.
T Consensus 29 ~I~~~l~yq~~~-~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a-~ala~~l~ 83 (212)
T 1tue_A 29 PIVQFLRYQQIE-FITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG-MSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHTTCC-HHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH-HHHHHHHT
T ss_pred HHHHHHHHcCcC-HHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH-HHHHHHhC
Confidence 455556544432 2222 2333344444 35999999999999754 56666653
No 157
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=73.02 E-value=2.3 Score=37.58 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=19.4
Q ss_pred HhhHhcCCc--EEEEcCCCchhHHHh
Q 028267 167 IPVLLSDRE--CFACAPTGSGKTLAF 190 (211)
Q Consensus 167 ip~il~G~d--vi~~A~TGsGKTlaf 190 (211)
+..++.|.+ |++-++||||||.+.
T Consensus 96 v~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 96 VSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCceEEEEECCCCCCCceEe
Confidence 345678876 778899999999885
No 158
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=73.02 E-value=1.9 Score=32.99 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=17.1
Q ss_pred CcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 174 RECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
..+++.+++|+|||... --+...+
T Consensus 39 ~~~ll~G~~G~GKT~l~-~~l~~~~ 62 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATA-IALARDL 62 (226)
T ss_dssp CCEEEECSTTSSHHHHH-HHHHHHH
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHH
Confidence 45999999999999743 3344444
No 159
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=73.02 E-value=2 Score=38.48 Aligned_cols=22 Identities=41% Similarity=0.659 Sum_probs=18.5
Q ss_pred hHhcCCc--EEEEcCCCchhHHHh
Q 028267 169 VLLSDRE--CFACAPTGSGKTLAF 190 (211)
Q Consensus 169 ~il~G~d--vi~~A~TGsGKTlaf 190 (211)
.++.|.+ |++-++||||||.+.
T Consensus 93 ~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 93 HLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HhhcCceeeEeeecCCCCCCCeEe
Confidence 4578875 788999999999986
No 160
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=72.93 E-value=3 Score=35.54 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=19.1
Q ss_pred CCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 173 DRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+..+++.+++|+|||... ..+...+.
T Consensus 152 ~~~lll~G~~GtGKT~La-~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLL-AAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHH-HHHHHHHH
T ss_pred CceEEEECCCCCCHHHHH-HHHHHHHH
Confidence 688999999999999754 23444443
No 161
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=72.87 E-value=1.7 Score=35.80 Aligned_cols=20 Identities=20% Similarity=0.335 Sum_probs=16.0
Q ss_pred hcCCcEEEEcCCCchhH-HHh
Q 028267 171 LSDRECFACAPTGSGKT-LAF 190 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKT-laf 190 (211)
..|+-++++++||+||| +|.
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~ 52 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETAL 52 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHH
T ss_pred ECCEEEEEECCCCCCHHHHHH
Confidence 35677999999999996 544
No 162
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=72.74 E-value=2.1 Score=38.74 Aligned_cols=23 Identities=39% Similarity=0.720 Sum_probs=18.8
Q ss_pred hhHhcCCc--EEEEcCCCchhHHHh
Q 028267 168 PVLLSDRE--CFACAPTGSGKTLAF 190 (211)
Q Consensus 168 p~il~G~d--vi~~A~TGsGKTlaf 190 (211)
..++.|.+ |++-++||||||.+.
T Consensus 148 ~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 148 QTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHhcCCceeEEeecCCCCCCCeEe
Confidence 34678865 788999999999985
No 163
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=72.68 E-value=2.4 Score=36.02 Aligned_cols=20 Identities=30% Similarity=0.413 Sum_probs=16.5
Q ss_pred hcCCcEEEEcCCCchhHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf 190 (211)
..+..|++.+++|||||+..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp STTSCEEEESCTTSCHHHHH
T ss_pred CCCCcEEEECCCCchHHHHH
Confidence 34678999999999999753
No 164
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=72.57 E-value=3.6 Score=33.12 Aligned_cols=32 Identities=28% Similarity=0.390 Sum_probs=24.1
Q ss_pred cHHHHHHHhhHhcCCcEEEEcCCCchhHHHhH
Q 028267 160 TPIQRQAIPVLLSDRECFACAPTGSGKTLAFL 191 (211)
Q Consensus 160 t~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~ 191 (211)
+--|..++..+..|.-+.+.+++|||||..+-
T Consensus 9 ~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~ 40 (208)
T 3b85_A 9 TLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAM 40 (208)
T ss_dssp SHHHHHHHHHHHHCSEEEEECCTTSSTTHHHH
T ss_pred CHhHHHHHHhccCCCEEEEECCCCCCHHHHHH
Confidence 33455666667788889999999999987643
No 165
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=72.57 E-value=3.9 Score=45.87 Aligned_cols=47 Identities=13% Similarity=0.164 Sum_probs=31.8
Q ss_pred CHHHHHHHHHcCCCCCcHHHHH-HH---hhHhcCCcEEEEcCCCchhHHHhH
Q 028267 144 ESYLLRNLAELGYKEPTPIQRQ-AI---PVLLSDRECFACAPTGSGKTLAFL 191 (211)
Q Consensus 144 ~~~ll~~l~~~g~~~pt~iQ~~-ai---p~il~G~dvi~~A~TGsGKTlaf~ 191 (211)
...+.+.+..+|+. |++.+.. ++ ..+...+.+++++|||||||.++-
T Consensus 874 ~~ai~~~~~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 874 RKKIQEIAKQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 34566667788885 5553332 22 223455779999999999999874
No 166
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=72.48 E-value=1.7 Score=36.35 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=17.4
Q ss_pred HhcCCcEEEEcCCCchhHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf 190 (211)
+..|.-+++++|||||||..+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 456777999999999999854
No 167
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=72.11 E-value=4.1 Score=38.88 Aligned_cols=25 Identities=40% Similarity=0.571 Sum_probs=20.5
Q ss_pred HHhhHhcCCc--EEEEcCCCchhHHHh
Q 028267 166 AIPVLLSDRE--CFACAPTGSGKTLAF 190 (211)
Q Consensus 166 aip~il~G~d--vi~~A~TGsGKTlaf 190 (211)
.+..++.|.+ |++-++||||||.+-
T Consensus 454 ~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 454 LIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEccCCCCCchhhcc
Confidence 4567789976 777899999999875
No 168
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=72.03 E-value=1.6 Score=34.16 Aligned_cols=18 Identities=28% Similarity=0.279 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCchhHHH
Q 028267 172 SDRECFACAPTGSGKTLA 189 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTla 189 (211)
.|+-+++++++|||||..
T Consensus 24 ~~~~i~l~G~~GsGKsTl 41 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTL 41 (199)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCCEEEEEcCCCCCHHHH
Confidence 477899999999999975
No 169
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=71.97 E-value=2.1 Score=38.36 Aligned_cols=23 Identities=39% Similarity=0.720 Sum_probs=18.8
Q ss_pred hhHhcCCc--EEEEcCCCchhHHHh
Q 028267 168 PVLLSDRE--CFACAPTGSGKTLAF 190 (211)
Q Consensus 168 p~il~G~d--vi~~A~TGsGKTlaf 190 (211)
..++.|.+ |++-++||||||.+.
T Consensus 128 ~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 128 QTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHhcCCceEEEEecCCCCCCCeEe
Confidence 44678865 888999999999885
No 170
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=71.68 E-value=1.7 Score=35.88 Aligned_cols=17 Identities=29% Similarity=0.460 Sum_probs=14.1
Q ss_pred CcEEEEcCCCchhHHHh
Q 028267 174 RECFACAPTGSGKTLAF 190 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf 190 (211)
+.+++.+++|||||...
T Consensus 74 ~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcChHHHHH
Confidence 34999999999999743
No 171
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=71.15 E-value=2.4 Score=37.80 Aligned_cols=25 Identities=36% Similarity=0.504 Sum_probs=20.5
Q ss_pred HHhhHhcCCc--EEEEcCCCchhHHHh
Q 028267 166 AIPVLLSDRE--CFACAPTGSGKTLAF 190 (211)
Q Consensus 166 aip~il~G~d--vi~~A~TGsGKTlaf 190 (211)
.+..++.|.+ |++-++||||||.+.
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 4556788975 788899999999986
No 172
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=70.72 E-value=3.9 Score=33.97 Aligned_cols=29 Identities=10% Similarity=0.091 Sum_probs=19.8
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+..|.=+++.+++|+|||... .-++..+.
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~-~~ia~~~~ 60 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFV-RQQALQWG 60 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHH-HHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHH-HHHHHHHH
Confidence 345777889999999999744 33333333
No 173
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=70.68 E-value=3.3 Score=37.69 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=19.1
Q ss_pred hhHhcCCc--EEEEcCCCchhHHHh
Q 028267 168 PVLLSDRE--CFACAPTGSGKTLAF 190 (211)
Q Consensus 168 p~il~G~d--vi~~A~TGsGKTlaf 190 (211)
..++.|.+ |++-++||||||.+.
T Consensus 130 ~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 130 DHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHhhcCCceEEEEeCCCCCCCCEEe
Confidence 34578875 888999999999987
No 174
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=70.67 E-value=2.2 Score=36.83 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=20.3
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
+..|..++++++||||||.. +-+|..+
T Consensus 168 i~~g~~v~i~G~~GsGKTTl--l~~l~g~ 194 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTY--IKSIMEF 194 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHH--HHHGGGG
T ss_pred ccCCCEEEEECCCCCCHHHH--HHHHhCC
Confidence 45788999999999999983 3344444
No 175
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=70.16 E-value=1.9 Score=36.48 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=18.6
Q ss_pred cCCcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 172 SDRECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
.+..+++.+++|+|||... --+...+
T Consensus 43 ~~~~vll~G~~G~GKT~l~-~~~~~~~ 68 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVA-RLVLRRL 68 (387)
T ss_dssp CCCCEEECBCTTSSHHHHH-HHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHH-HHHHHHH
Confidence 3568999999999999853 2334444
No 176
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=70.05 E-value=6.3 Score=35.26 Aligned_cols=29 Identities=17% Similarity=0.162 Sum_probs=21.5
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
..|.=+++.|++|+|||. |++-++..+..
T Consensus 201 ~~G~liiI~G~pG~GKTt-l~l~ia~~~~~ 229 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTA-FALNIAQNVAT 229 (454)
T ss_dssp CTTCEEEEECCTTSCHHH-HHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHH-HHHHHHHHHHH
Confidence 345668899999999996 55666666554
No 177
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.77 E-value=1.8 Score=39.53 Aligned_cols=18 Identities=28% Similarity=0.414 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCchhHHHh
Q 028267 173 DRECFACAPTGSGKTLAF 190 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf 190 (211)
.+.+|..+|+|||||+..
T Consensus 216 prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CSEEEEESSTTTTHHHHH
T ss_pred CCCCceECCCCchHHHHH
Confidence 378999999999999853
No 178
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=69.72 E-value=4.2 Score=36.81 Aligned_cols=30 Identities=7% Similarity=0.049 Sum_probs=22.5
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHhcc
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLRVL 201 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~~~ 201 (211)
..|.=+++.|++|+|||. |++-++..+...
T Consensus 240 ~~G~l~li~G~pG~GKT~-lal~~a~~~a~~ 269 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMST-FVRQQALQWGTA 269 (503)
T ss_dssp CTTCEEEEEESSCHHHHH-HHHHHHHHHTTT
T ss_pred CCCeEEEEeecCCCCchH-HHHHHHHHHHHh
Confidence 345668899999999997 566777666554
No 179
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=69.37 E-value=5.6 Score=34.55 Aligned_cols=28 Identities=18% Similarity=0.253 Sum_probs=20.0
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
..+.+++++++||+|||.... -++..+.
T Consensus 33 ~~~~~~~i~G~~G~GKs~~~~-~~~~~~~ 60 (392)
T 4ag6_A 33 RTNSNWTILAKPGAGKSFTAK-MLLLREY 60 (392)
T ss_dssp BCCCCEEEECCTTSSHHHHHH-HHHHHHH
T ss_pred cccCceEEEcCCCCCHHHHHH-HHHHHHH
Confidence 356789999999999997543 3444443
No 180
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=69.01 E-value=5.2 Score=37.67 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=20.0
Q ss_pred CCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 173 DRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
+.++++.+.||||||.+. -.+|..|..
T Consensus 214 ~pHlLIaG~TGSGKS~~L-~tlI~sLl~ 240 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGV-NAMLLSILF 240 (574)
T ss_dssp SCCEEEECCTTSSHHHHH-HHHHHHHHT
T ss_pred CCeeEEECCCCCCHHHHH-HHHHHHHHH
Confidence 358999999999999865 455555543
No 181
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=68.65 E-value=2.5 Score=35.61 Aligned_cols=26 Identities=19% Similarity=0.196 Sum_probs=18.8
Q ss_pred CCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 173 DRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+..+++.+++|+|||... --+...+.
T Consensus 37 ~~~lll~G~~GtGKT~la-~~i~~~~~ 62 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLL-QAAGNEAK 62 (324)
T ss_dssp CSSEEEECSSSSSHHHHH-HHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHH-HHHHHHHH
Confidence 468999999999999753 34444443
No 182
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=68.60 E-value=3.8 Score=35.95 Aligned_cols=19 Identities=32% Similarity=0.525 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCchhHHHh
Q 028267 172 SDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf 190 (211)
.|.-++++++||||||..+
T Consensus 122 ~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp SSEEEEEECSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3446899999999999754
No 183
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=68.52 E-value=8 Score=34.41 Aligned_cols=43 Identities=16% Similarity=0.101 Sum_probs=32.6
Q ss_pred CCcHHHHHHHhhHhcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 158 EPTPIQRQAIPVLLSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 158 ~pt~iQ~~aip~il~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
.|+|.|...+-.+...+-+++..+-+.|||...+.-++..+..
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~ 205 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF 205 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh
Confidence 5788888877665545668888999999999887766655444
No 184
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=67.80 E-value=2 Score=37.91 Aligned_cols=17 Identities=24% Similarity=0.362 Sum_probs=14.3
Q ss_pred CCcEEEEcCCCchhHHH
Q 028267 173 DRECFACAPTGSGKTLA 189 (211)
Q Consensus 173 G~dvi~~A~TGsGKTla 189 (211)
++-|++++|||||||..
T Consensus 40 ~~lIvI~GPTgsGKTtL 56 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRL 56 (339)
T ss_dssp CEEEEEECSTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 34689999999999974
No 185
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=67.65 E-value=4.6 Score=31.97 Aligned_cols=22 Identities=23% Similarity=0.225 Sum_probs=17.6
Q ss_pred HhcCCcEEEEcCCCchhHHHhH
Q 028267 170 LLSDRECFACAPTGSGKTLAFL 191 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~ 191 (211)
+-.|.-+++.+|+|||||..+.
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHH
Confidence 3457789999999999998554
No 186
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=67.48 E-value=3.1 Score=37.52 Aligned_cols=29 Identities=17% Similarity=0.081 Sum_probs=21.1
Q ss_pred cCCcEEEEcCCCchhHHHhHHHHHHHHhcc
Q 028267 172 SDRECFACAPTGSGKTLAFLCPMLMKLRVL 201 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf~lPil~~l~~~ 201 (211)
.|.=+++.|++|+|||. |++-++..+...
T Consensus 196 ~G~liiIaG~pG~GKTt-lal~ia~~~a~~ 224 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTA-FALKQAKNMSDN 224 (444)
T ss_dssp SSCEEEEEECSSSSHHH-HHHHHHHHHHHT
T ss_pred CCcEEEEEeCCCCChHH-HHHHHHHHHHHc
Confidence 34568999999999997 556666665443
No 187
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=67.19 E-value=2.6 Score=36.50 Aligned_cols=18 Identities=22% Similarity=0.414 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCchhHHHh
Q 028267 173 DRECFACAPTGSGKTLAF 190 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf 190 (211)
.+.+++.+++|||||+..
T Consensus 84 ~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCEEEECSTTSCHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 357999999999999854
No 188
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=66.64 E-value=2.7 Score=35.45 Aligned_cols=17 Identities=29% Similarity=0.384 Sum_probs=14.9
Q ss_pred CcEEEEcCCCchhHHHh
Q 028267 174 RECFACAPTGSGKTLAF 190 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf 190 (211)
..+++.+++|+|||...
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 57999999999999853
No 189
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=66.22 E-value=2.9 Score=36.06 Aligned_cols=19 Identities=47% Similarity=0.609 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCchhHHHh
Q 028267 172 SDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf 190 (211)
....+++.+++|+|||...
T Consensus 71 ~~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCCEEEECCCCCCHHHHH
Confidence 3568999999999999743
No 190
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=66.00 E-value=4.7 Score=30.97 Aligned_cols=15 Identities=27% Similarity=0.328 Sum_probs=13.4
Q ss_pred cEEEEcCCCchhHHH
Q 028267 175 ECFACAPTGSGKTLA 189 (211)
Q Consensus 175 dvi~~A~TGsGKTla 189 (211)
-+++.+++|+|||..
T Consensus 47 ~~ll~G~~G~GKT~l 61 (250)
T 1njg_A 47 AYLFSGTRGVGKTSI 61 (250)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 589999999999974
No 191
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=65.88 E-value=4.1 Score=36.00 Aligned_cols=19 Identities=47% Similarity=0.761 Sum_probs=16.5
Q ss_pred cCCc--EEEEcCCCchhHHHh
Q 028267 172 SDRE--CFACAPTGSGKTLAF 190 (211)
Q Consensus 172 ~G~d--vi~~A~TGsGKTlaf 190 (211)
.|.+ |++-++||||||.+.
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 4776 699999999999886
No 192
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=65.62 E-value=2.7 Score=36.64 Aligned_cols=18 Identities=33% Similarity=0.545 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCchhHHHh
Q 028267 173 DRECFACAPTGSGKTLAF 190 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf 190 (211)
++.+++.+++|+|||...
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 578999999999999753
No 193
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=65.40 E-value=2.7 Score=36.94 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=17.1
Q ss_pred HhcCCcEEEEcCCCchhHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf 190 (211)
+..|.-++++++||||||...
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHH
Confidence 345777999999999999854
No 194
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=65.19 E-value=3.1 Score=32.39 Aligned_cols=20 Identities=20% Similarity=0.162 Sum_probs=16.5
Q ss_pred HhcCCcEEEEcCCCchhHHH
Q 028267 170 LLSDRECFACAPTGSGKTLA 189 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTla 189 (211)
+..|.-+++.+++|+|||..
T Consensus 20 i~~G~~~~i~G~~GsGKTtl 39 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIF 39 (235)
T ss_dssp EETTCEEEEECSTTSSHHHH
T ss_pred CcCCCEEEEEcCCCCCHHHH
Confidence 34588899999999999964
No 195
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=64.87 E-value=5 Score=35.14 Aligned_cols=29 Identities=21% Similarity=0.173 Sum_probs=21.4
Q ss_pred cCCcEEEEcCCCchhHHHhHHHHHHHHhcc
Q 028267 172 SDRECFACAPTGSGKTLAFLCPMLMKLRVL 201 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf~lPil~~l~~~ 201 (211)
.|+-+++.+++|+|||. |++-++..+...
T Consensus 62 ~G~ii~I~G~pGsGKTt-Lal~la~~~~~~ 90 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTT-LTLQVIAAAQRE 90 (356)
T ss_dssp TTSEEEEECSTTSSHHH-HHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHH-HHHHHHHHHHHC
Confidence 46779999999999997 445666555543
No 196
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=64.45 E-value=7 Score=34.11 Aligned_cols=27 Identities=19% Similarity=0.156 Sum_probs=20.5
Q ss_pred CCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 173 DRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
|.=+++.|++|+|||. |++-++..+..
T Consensus 46 G~LiiIaG~pG~GKTt-~al~ia~~~a~ 72 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTS-LMMNMVLSALN 72 (338)
T ss_dssp TCEEEEEECTTSCHHH-HHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHH-HHHHHHHHHHH
Confidence 5568899999999997 55666666554
No 197
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=64.43 E-value=2.3 Score=35.38 Aligned_cols=18 Identities=28% Similarity=0.289 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCchhHHHh
Q 028267 173 DRECFACAPTGSGKTLAF 190 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf 190 (211)
...+++.+++|+|||...
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 468999999999999753
No 198
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=63.92 E-value=5.8 Score=32.66 Aligned_cols=17 Identities=35% Similarity=0.370 Sum_probs=14.5
Q ss_pred CcEEEEcCCCchhHHHh
Q 028267 174 RECFACAPTGSGKTLAF 190 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf 190 (211)
..+++.+++|||||...
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 36999999999999754
No 199
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=63.89 E-value=10 Score=33.78 Aligned_cols=19 Identities=11% Similarity=-0.087 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCchhHHHhH
Q 028267 173 DRECFACAPTGSGKTLAFL 191 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf~ 191 (211)
|.=+++++++|||||....
T Consensus 178 Gei~~I~G~sGsGKTTLl~ 196 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCH 196 (400)
T ss_dssp TSEEEEEESTTSSHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHH
Confidence 3568899999999997543
No 200
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=63.87 E-value=2.2 Score=35.90 Aligned_cols=18 Identities=22% Similarity=0.296 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCchhHHHh
Q 028267 173 DRECFACAPTGSGKTLAF 190 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf 190 (211)
+..+++.+++|+|||...
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 346999999999999743
No 201
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=63.81 E-value=4.4 Score=32.39 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=16.2
Q ss_pred HhcCCcEEEEcCCCchhHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf 190 (211)
+-.|.=+.+++|+|+|||..+
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 345788999999999998654
No 202
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=63.62 E-value=4.9 Score=33.68 Aligned_cols=17 Identities=29% Similarity=0.509 Sum_probs=14.4
Q ss_pred CcEEEEcCCCchhHHHh
Q 028267 174 RECFACAPTGSGKTLAF 190 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf 190 (211)
.++++.+++|+|||...
T Consensus 59 ~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45999999999999753
No 203
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=63.01 E-value=5.9 Score=43.76 Aligned_cols=47 Identities=13% Similarity=0.095 Sum_probs=32.0
Q ss_pred CHHHHHHHHHcCCCCCcHHHHHHH----hhHhcCCcEEEEcCCCchhHHHhH
Q 028267 144 ESYLLRNLAELGYKEPTPIQRQAI----PVLLSDRECFACAPTGSGKTLAFL 191 (211)
Q Consensus 144 ~~~ll~~l~~~g~~~pt~iQ~~ai----p~il~G~dvi~~A~TGsGKTlaf~ 191 (211)
...+.+.+...|+. +++.+..-+ ..+...+.|+++++||||||.++-
T Consensus 891 ~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 891 VQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 34566777788885 555442222 234456789999999999999764
No 204
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=62.18 E-value=8.5 Score=34.37 Aligned_cols=26 Identities=19% Similarity=0.097 Sum_probs=18.6
Q ss_pred CCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 173 DRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+..+++.+++|+|||... --+...+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa-~aia~~l~ 155 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLL-QSIGNYVV 155 (440)
T ss_dssp SCCEEEECSSSSSHHHHH-HHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHH
Confidence 467999999999999753 33444443
No 205
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=61.77 E-value=5 Score=34.16 Aligned_cols=26 Identities=19% Similarity=0.124 Sum_probs=18.8
Q ss_pred cCCcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 172 SDRECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
.|.-+++.+++|+|||.. ++-++..+
T Consensus 106 ~G~i~~i~G~~GsGKT~l-a~~la~~~ 131 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQL-CHQLSVNV 131 (324)
T ss_dssp TTSEEEEEESTTSSHHHH-HHHHHHHT
T ss_pred CCcEEEEECCCCCCHhHH-HHHHHHHH
Confidence 356789999999999974 44444443
No 206
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=61.75 E-value=3.8 Score=34.47 Aligned_cols=26 Identities=35% Similarity=0.402 Sum_probs=18.9
Q ss_pred CCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 173 DRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+..+++.+++|+|||.... -+...+.
T Consensus 45 ~~~vli~G~~G~GKTtl~~-~l~~~~~ 70 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVK-FVLSKLH 70 (386)
T ss_dssp CCCEEEEECTTSSHHHHHH-HHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHH
Confidence 5689999999999998543 3444443
No 207
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=61.63 E-value=3.9 Score=32.21 Aligned_cols=30 Identities=17% Similarity=0.054 Sum_probs=21.6
Q ss_pred cHHHHHHHhhHhcCCcEEEEcCCCchhHHHh
Q 028267 160 TPIQRQAIPVLLSDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 160 t~iQ~~aip~il~G~dvi~~A~TGsGKTlaf 190 (211)
++++... ..+..|.-+++++++|||||...
T Consensus 13 ~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 13 TRSERTE-LRNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp CHHHHHH-HHTSSCEEEEEECSTTSSHHHHH
T ss_pred CHHHhhc-ccCCCCCEEEEECCCCCCHHHHH
Confidence 4554444 34566788999999999998743
No 208
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=61.02 E-value=6.1 Score=34.37 Aligned_cols=28 Identities=21% Similarity=0.191 Sum_probs=20.2
Q ss_pred cCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 172 SDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
.|.-+++.+++|||||.. ++-++..+..
T Consensus 60 ~G~iv~I~G~pGsGKTtL-al~la~~~~~ 87 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTV-ALHAVANAQA 87 (349)
T ss_dssp TTSEEEEEESTTSSHHHH-HHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHH-HHHHHHHHHh
Confidence 467799999999999974 4555555443
No 209
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=60.47 E-value=4.5 Score=31.54 Aligned_cols=19 Identities=32% Similarity=0.382 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCchhHHHh
Q 028267 172 SDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf 190 (211)
.|.-+++++++|||||...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4777999999999999743
No 210
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=59.54 E-value=4.2 Score=34.46 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=17.2
Q ss_pred cEEEEcCCCchhHHHhHHHHHHHH
Q 028267 175 ECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 175 dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
.+++.+++|+|||...- -++..+
T Consensus 46 ~~li~G~~G~GKTtl~~-~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLR-KLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHH-HHHHHH
T ss_pred eEEEECCCCCCHHHHHH-HHHHHH
Confidence 79999999999998542 344444
No 211
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=59.53 E-value=9.6 Score=31.29 Aligned_cols=16 Identities=38% Similarity=0.501 Sum_probs=14.0
Q ss_pred cEEEEcCCCchhHHHh
Q 028267 175 ECFACAPTGSGKTLAF 190 (211)
Q Consensus 175 dvi~~A~TGsGKTlaf 190 (211)
.+++.+++|+|||...
T Consensus 48 ~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAA 63 (327)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 5999999999999753
No 212
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=59.40 E-value=4.1 Score=34.58 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=18.1
Q ss_pred CCcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 173 DRECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
++.+++.+++|+|||... --+...+
T Consensus 45 ~~~vll~G~~G~GKT~la-~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS-KYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHH-HHHHHHH
T ss_pred CCcEEEECCCCCCHHHHH-HHHHHHH
Confidence 356999999999999753 3344444
No 213
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=59.18 E-value=3.2 Score=33.16 Aligned_cols=21 Identities=24% Similarity=0.214 Sum_probs=13.1
Q ss_pred HhcCCcEEEEcCCCchhHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf 190 (211)
+..|.=+.+.+++|||||...
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EECCCEEEEECSCC----CHH
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 346777889999999999753
No 214
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=58.87 E-value=6.1 Score=34.77 Aligned_cols=27 Identities=19% Similarity=0.123 Sum_probs=21.3
Q ss_pred CCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 173 DRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
|.=+++.+++|+|||. +++.++..+..
T Consensus 61 G~i~~I~GppGsGKST-Lal~la~~~~~ 87 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTT-LALHAIAEAQK 87 (356)
T ss_dssp TEEEEEEESTTSSHHH-HHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHH-HHHHHHHHHHh
Confidence 5668899999999996 66777776654
No 215
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=58.84 E-value=4.6 Score=31.87 Aligned_cols=22 Identities=14% Similarity=-0.023 Sum_probs=17.9
Q ss_pred HhcCCcEEEEcCCCchhHHHhH
Q 028267 170 LLSDRECFACAPTGSGKTLAFL 191 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~ 191 (211)
+..|.-+++.+++|+|||....
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~ 42 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICH 42 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHH
Confidence 4457889999999999998554
No 216
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=58.76 E-value=11 Score=34.32 Aligned_cols=18 Identities=33% Similarity=0.457 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCchhHHHh
Q 028267 173 DRECFACAPTGSGKTLAF 190 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf 190 (211)
.+++++.+++|+|||...
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 468999999999998743
No 217
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=58.71 E-value=5 Score=37.56 Aligned_cols=15 Identities=13% Similarity=0.231 Sum_probs=14.1
Q ss_pred cEEEEcCCCchhHHH
Q 028267 175 ECFACAPTGSGKTLA 189 (211)
Q Consensus 175 dvi~~A~TGsGKTla 189 (211)
++++.+++|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999984
No 218
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=58.47 E-value=6.8 Score=32.51 Aligned_cols=22 Identities=32% Similarity=0.354 Sum_probs=18.4
Q ss_pred hHhcCCcEEEEcCCCchhHHHh
Q 028267 169 VLLSDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 169 ~il~G~dvi~~A~TGsGKTlaf 190 (211)
..+.|..|++++++|||||...
T Consensus 44 ~~l~g~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 44 PYLNGRSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp HHHTTCCEEEECSTTSCHHHHH
T ss_pred hhcCCCEEEEECCCCCCHHHHH
Confidence 3456999999999999999853
No 219
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=58.07 E-value=4.5 Score=30.75 Aligned_cols=16 Identities=25% Similarity=0.104 Sum_probs=13.1
Q ss_pred cEEEEcCCCchhHHHh
Q 028267 175 ECFACAPTGSGKTLAF 190 (211)
Q Consensus 175 dvi~~A~TGsGKTlaf 190 (211)
=+++++++|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 3678999999999854
No 220
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=57.75 E-value=11 Score=32.22 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCchhHHHh
Q 028267 172 SDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf 190 (211)
.|.-+.+++++|||||...
T Consensus 101 ~g~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SSSEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCcHHHHH
Confidence 3566888999999999854
No 221
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=56.71 E-value=3.8 Score=34.47 Aligned_cols=17 Identities=29% Similarity=0.302 Sum_probs=14.3
Q ss_pred CCcEEEEcCCCchhHHH
Q 028267 173 DRECFACAPTGSGKTLA 189 (211)
Q Consensus 173 G~dvi~~A~TGsGKTla 189 (211)
+.-+|+++++|||||..
T Consensus 33 ~~livl~G~sGsGKSTl 49 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSL 49 (287)
T ss_dssp CEEEEEECCTTSCTHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45589999999999874
No 222
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=56.51 E-value=4.2 Score=31.76 Aligned_cols=22 Identities=23% Similarity=0.071 Sum_probs=17.5
Q ss_pred hHhcCCcEEEEcCCCchhHHHh
Q 028267 169 VLLSDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 169 ~il~G~dvi~~A~TGsGKTlaf 190 (211)
-+..|.=+.+++++|||||...
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHH
Confidence 3456777899999999999744
No 223
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=56.04 E-value=5.5 Score=30.08 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=12.5
Q ss_pred EEEEcCCCchhHHHh
Q 028267 176 CFACAPTGSGKTLAF 190 (211)
Q Consensus 176 vi~~A~TGsGKTlaf 190 (211)
.++.+++|+|||..+
T Consensus 26 ~~I~G~NGsGKStil 40 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999999853
No 224
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=55.61 E-value=5.2 Score=36.58 Aligned_cols=18 Identities=39% Similarity=0.591 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCchhHHHh
Q 028267 173 DRECFACAPTGSGKTLAF 190 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf 190 (211)
.+.+++.+++|||||+..
T Consensus 238 ~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCcEEEECcCCCCHHHHH
Confidence 467999999999999853
No 225
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=55.56 E-value=8 Score=33.23 Aligned_cols=27 Identities=15% Similarity=0.189 Sum_probs=19.8
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
-.|.-+.+++++|||||..+ -+|..+.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl--~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLC--NSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHH--HHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHH--HHHhhhc
Confidence 46788999999999999743 4444443
No 226
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=54.83 E-value=5.4 Score=34.81 Aligned_cols=16 Identities=31% Similarity=0.528 Sum_probs=13.6
Q ss_pred cEEEEcCCCchhHHHh
Q 028267 175 ECFACAPTGSGKTLAF 190 (211)
Q Consensus 175 dvi~~A~TGsGKTlaf 190 (211)
-++++++||+|||..|
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4668999999999765
No 227
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=54.56 E-value=7.7 Score=34.90 Aligned_cols=28 Identities=14% Similarity=0.089 Sum_probs=20.0
Q ss_pred cCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 172 SDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
...++|+.+++|+|||... --+...+..
T Consensus 200 ~~~~~LL~G~pG~GKT~la-~~la~~l~~ 227 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIA-EGLAQQIIN 227 (468)
T ss_dssp SSCEEEEESCTTTTTHHHH-HHHHHHHHS
T ss_pred CCCCeEEECCCCCCHHHHH-HHHHHHHHh
Confidence 3468999999999999854 344555543
No 228
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=54.24 E-value=5.2 Score=44.19 Aligned_cols=21 Identities=48% Similarity=0.805 Sum_probs=18.0
Q ss_pred HhcCCcEEEEcCCCchhHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf 190 (211)
+..|+.++.++|||||||...
T Consensus 1264 l~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHHH
T ss_pred HHCCCeEEEECCCCCCHHHHH
Confidence 456899999999999999853
No 229
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=53.94 E-value=5.7 Score=32.73 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=18.6
Q ss_pred hHhcCCcEEEEcCCCchhHHHhH
Q 028267 169 VLLSDRECFACAPTGSGKTLAFL 191 (211)
Q Consensus 169 ~il~G~dvi~~A~TGsGKTlaf~ 191 (211)
-+..|.=+++.+++|+|||....
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~ 48 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLAL 48 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHH
Confidence 35578889999999999997543
No 230
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=53.78 E-value=8 Score=35.97 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=18.7
Q ss_pred hHhcCCcEEEEcCCCchhHHHh
Q 028267 169 VLLSDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 169 ~il~G~dvi~~A~TGsGKTlaf 190 (211)
.+..|..+++.+++|||||...
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHHH
T ss_pred cccCCCEEEEEeCCCCCHHHHH
Confidence 4567889999999999999854
No 231
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=53.14 E-value=4.9 Score=39.34 Aligned_cols=52 Identities=29% Similarity=0.406 Sum_probs=31.1
Q ss_pred CCchhhhhhcccCCCCHHHHHHHHHcCCCCCcHHHHHHHhhHh------cCCcEEEEcCCCchhHHHh
Q 028267 129 SPLRTFVKLSSRFGCESYLLRNLAELGYKEPTPIQRQAIPVLL------SDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 129 ~p~~~f~~l~~~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~il------~G~dvi~~A~TGsGKTlaf 190 (211)
.|-.+|+++ +.-..+.+.|...-. .| ++ .|.++ ..+.+|..+|+|||||+..
T Consensus 471 ~p~v~w~di----ggl~~~k~~l~e~v~-~p--~~---~p~~f~~~g~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 471 VPQVTWEDI----GGLEDVKRELQELVQ-YP--VE---HPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCCCSTTC----CSCHHHHHHHTTTTT-TT--TT---CSGGGSSSCCCCCSCCEEESSTTSSHHHHH
T ss_pred CCCCCHHHh----CCHHHHHHHHHHHHH-hh--hh---CHHHHHhcCCCCCceEEEecCCCCCchHHH
Confidence 344567766 666677777755421 11 10 12222 2357999999999999754
No 232
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=52.21 E-value=7.9 Score=32.95 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=14.7
Q ss_pred CcEEEEcCCCchhHHHh
Q 028267 174 RECFACAPTGSGKTLAF 190 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf 190 (211)
..+++.+|+|+|||...
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 56999999999999754
No 233
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=52.09 E-value=6.3 Score=35.89 Aligned_cols=17 Identities=41% Similarity=0.573 Sum_probs=15.0
Q ss_pred CcEEEEcCCCchhHHHh
Q 028267 174 RECFACAPTGSGKTLAF 190 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf 190 (211)
+.+++++++|+|||...
T Consensus 78 ~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 67999999999999854
No 234
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=51.60 E-value=8 Score=32.53 Aligned_cols=16 Identities=25% Similarity=0.482 Sum_probs=14.0
Q ss_pred cEEEEcCCCchhHHHh
Q 028267 175 ECFACAPTGSGKTLAF 190 (211)
Q Consensus 175 dvi~~A~TGsGKTlaf 190 (211)
.+++.+++|+|||...
T Consensus 38 ~~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRC 53 (354)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4999999999999754
No 235
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=51.57 E-value=12 Score=31.81 Aligned_cols=20 Identities=20% Similarity=0.210 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCchhHHHhH
Q 028267 172 SDRECFACAPTGSGKTLAFL 191 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf~ 191 (211)
.|.=+.+++++|+|||....
T Consensus 99 ~g~vi~lvG~nGsGKTTll~ 118 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLG 118 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 45668889999999998543
No 236
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=51.56 E-value=7.4 Score=31.71 Aligned_cols=27 Identities=22% Similarity=0.226 Sum_probs=19.5
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
-.|.-+.+++|+|||||.. +-+|..+.
T Consensus 29 ~~Ge~~~iiG~nGsGKSTL--l~~l~Gl~ 55 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTM--LNIIGCLD 55 (235)
T ss_dssp CTTCEEEEECSTTSSHHHH--HHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHH--HHHHhcCC
Confidence 4577788999999999973 34454443
No 237
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=50.96 E-value=6.3 Score=34.20 Aligned_cols=15 Identities=33% Similarity=0.457 Sum_probs=12.6
Q ss_pred EEEEcCCCchhHHHh
Q 028267 176 CFACAPTGSGKTLAF 190 (211)
Q Consensus 176 vi~~A~TGsGKTlaf 190 (211)
.+++++||+|||..+
T Consensus 28 ~vi~G~NGaGKT~il 42 (371)
T 3auy_A 28 VAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 567999999999853
No 238
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=50.78 E-value=7.8 Score=30.13 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=20.2
Q ss_pred CcHHHHHHHhhHhcCCcEEEEcCCCchhHHH
Q 028267 159 PTPIQRQAIPVLLSDRECFACAPTGSGKTLA 189 (211)
Q Consensus 159 pt~iQ~~aip~il~G~dvi~~A~TGsGKTla 189 (211)
.+..+..++ ....|.-+++.+++|||||..
T Consensus 12 ~~~~~~~~~-~~~~g~~i~l~G~sGsGKSTl 41 (200)
T 3uie_A 12 VEKVDRQRL-LDQKGCVIWVTGLSGSGKSTL 41 (200)
T ss_dssp CCHHHHHHH-HTSCCEEEEEECSTTSSHHHH
T ss_pred cCHHHHHHh-cCCCCeEEEEECCCCCCHHHH
Confidence 344444332 234577788999999999974
No 239
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=50.50 E-value=7.4 Score=35.85 Aligned_cols=19 Identities=26% Similarity=0.249 Sum_probs=16.5
Q ss_pred cCCcEEEEcCCCchhHHHh
Q 028267 172 SDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf 190 (211)
.|..+++.+|+|+|||...
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5788999999999999743
No 240
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=50.07 E-value=28 Score=30.01 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCchh-HHHhH
Q 028267 173 DRECFACAPTGSGK-TLAFL 191 (211)
Q Consensus 173 G~dvi~~A~TGsGK-Tlaf~ 191 (211)
|+-+++++++|+|| |++..
T Consensus 144 g~~vl~~G~sG~GKSt~a~~ 163 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALE 163 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHH
T ss_pred CEEEEEEeCCCCCHHHHHHH
Confidence 88899999999999 56554
No 241
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=50.03 E-value=6.7 Score=35.86 Aligned_cols=17 Identities=35% Similarity=0.602 Sum_probs=14.8
Q ss_pred CcEEEEcCCCchhHHHh
Q 028267 174 RECFACAPTGSGKTLAF 190 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf 190 (211)
+.+++.+++|||||+..
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56999999999999854
No 242
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=49.56 E-value=6.4 Score=31.70 Aligned_cols=18 Identities=28% Similarity=0.301 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCchhHHHh
Q 028267 173 DRECFACAPTGSGKTLAF 190 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf 190 (211)
+.-+++++++|||||...
T Consensus 27 ~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999743
No 243
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=49.11 E-value=7.5 Score=31.84 Aligned_cols=15 Identities=33% Similarity=0.594 Sum_probs=13.5
Q ss_pred cEEEEcCCCchhHHH
Q 028267 175 ECFACAPTGSGKTLA 189 (211)
Q Consensus 175 dvi~~A~TGsGKTla 189 (211)
.+++.+++|+|||..
T Consensus 40 ~~ll~G~~G~GKt~l 54 (319)
T 2chq_A 40 HLLFSGPPGTGKTAT 54 (319)
T ss_dssp CEEEESSSSSSHHHH
T ss_pred eEEEECcCCcCHHHH
Confidence 599999999999964
No 244
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=48.81 E-value=12 Score=31.69 Aligned_cols=16 Identities=31% Similarity=0.546 Sum_probs=13.6
Q ss_pred cEEEEcCCCchhHHHh
Q 028267 175 ECFACAPTGSGKTLAF 190 (211)
Q Consensus 175 dvi~~A~TGsGKTlaf 190 (211)
+++..+|+|+|||...
T Consensus 48 ~~ll~Gp~G~GKTtla 63 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTI 63 (340)
T ss_dssp CEEEECSSSSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3899999999999754
No 245
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=48.54 E-value=7.6 Score=37.00 Aligned_cols=27 Identities=15% Similarity=0.119 Sum_probs=19.5
Q ss_pred cCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 172 SDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
...++|+.+++|+|||... --+...+.
T Consensus 200 ~~~~vLL~G~pGtGKT~la-~~la~~l~ 226 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIA-EGLAQQII 226 (758)
T ss_dssp SSCEEEEESCTTTTTHHHH-HHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHH-HHHHHHHh
Confidence 3468999999999999843 34444443
No 246
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=48.35 E-value=8.2 Score=30.24 Aligned_cols=19 Identities=21% Similarity=0.205 Sum_probs=15.4
Q ss_pred hcCCcEEEEcCCCchhHHH
Q 028267 171 LSDRECFACAPTGSGKTLA 189 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTla 189 (211)
-.|.=+.+.+++|||||..
T Consensus 20 ~~g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTL 38 (208)
T ss_dssp CSCEEEEEECCTTSCTHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 3577788999999999854
No 247
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=48.30 E-value=9 Score=34.49 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=14.6
Q ss_pred CcEEEEcCCCchhHHHh
Q 028267 174 RECFACAPTGSGKTLAF 190 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf 190 (211)
..+++.+++|+|||...
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 46999999999999854
No 248
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=48.19 E-value=28 Score=31.56 Aligned_cols=31 Identities=16% Similarity=0.333 Sum_probs=22.4
Q ss_pred HHHHHHHhh---HhcCCcEEEEcCCCchhHHHhH
Q 028267 161 PIQRQAIPV---LLSDRECFACAPTGSGKTLAFL 191 (211)
Q Consensus 161 ~iQ~~aip~---il~G~dvi~~A~TGsGKTlaf~ 191 (211)
..-..+|.. +-.|.-+.+.+++|+|||....
T Consensus 159 ~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~ 192 (422)
T 3ice_A 159 DLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQ 192 (422)
T ss_dssp HHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHH
T ss_pred cccceeeeeeeeecCCcEEEEecCCCCChhHHHH
Confidence 334445544 3468889999999999998653
No 249
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=47.91 E-value=7.6 Score=33.69 Aligned_cols=21 Identities=19% Similarity=0.178 Sum_probs=17.2
Q ss_pred hcCCcEEEEcCCCchh-HHHhH
Q 028267 171 LSDRECFACAPTGSGK-TLAFL 191 (211)
Q Consensus 171 l~G~dvi~~A~TGsGK-Tlaf~ 191 (211)
..|+-++.++++|+|| |+|..
T Consensus 145 ~~g~gvli~G~sG~GKStlal~ 166 (312)
T 1knx_A 145 VFGVGVLLTGRSGIGKSECALD 166 (312)
T ss_dssp ETTEEEEEEESSSSSHHHHHHH
T ss_pred ECCEEEEEEcCCCCCHHHHHHH
Confidence 3578899999999999 56654
No 250
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=47.51 E-value=7.6 Score=43.62 Aligned_cols=20 Identities=45% Similarity=0.767 Sum_probs=17.5
Q ss_pred hHhcCCcEEEEcCCCchhHH
Q 028267 169 VLLSDRECFACAPTGSGKTL 188 (211)
Q Consensus 169 ~il~G~dvi~~A~TGsGKTl 188 (211)
.+..|+.|+.++|||||||.
T Consensus 1300 ll~~~~pvLL~GptGtGKT~ 1319 (3245)
T 3vkg_A 1300 WLSEHRPLILCGPPGSGKTM 1319 (3245)
T ss_dssp HHHTTCCCEEESSTTSSHHH
T ss_pred HHHCCCcEEEECCCCCCHHH
Confidence 34578999999999999995
No 251
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=47.39 E-value=9.4 Score=31.11 Aligned_cols=26 Identities=15% Similarity=0.165 Sum_probs=18.9
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
..|.-+.+.+++|||||..+ -+|..+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl--~~l~Gl 54 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLL--SALLAE 54 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHH--HHHTTC
T ss_pred CCCCEEEEECCCCCCHHHHH--HHHhcC
Confidence 45777889999999999743 344444
No 252
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=47.14 E-value=8.9 Score=30.34 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=12.5
Q ss_pred EEEEcCCCchhHHHh
Q 028267 176 CFACAPTGSGKTLAF 190 (211)
Q Consensus 176 vi~~A~TGsGKTlaf 190 (211)
.++++++|+|||..+
T Consensus 26 ~~I~G~NgsGKStil 40 (203)
T 3qks_A 26 NLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEEcCCCCCHHHHH
Confidence 567899999999764
No 253
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=47.12 E-value=16 Score=31.41 Aligned_cols=19 Identities=26% Similarity=0.221 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCchhHHHh
Q 028267 172 SDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf 190 (211)
.|.=+++++++|+|||...
T Consensus 128 ~g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SSEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4666889999999999843
No 254
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=46.70 E-value=13 Score=35.37 Aligned_cols=16 Identities=38% Similarity=0.393 Sum_probs=14.1
Q ss_pred cEEEEcCCCchhHHHh
Q 028267 175 ECFACAPTGSGKTLAF 190 (211)
Q Consensus 175 dvi~~A~TGsGKTlaf 190 (211)
.++..++||+|||...
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4999999999999854
No 255
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=46.38 E-value=14 Score=28.18 Aligned_cols=27 Identities=15% Similarity=0.078 Sum_probs=19.1
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
..|.=+.+.++.|+|||.. +-+|..+.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTL--lr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTL--TRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHH--HHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHH--HHHHHHhC
Confidence 4566677899999999973 34555554
No 256
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=46.14 E-value=18 Score=30.84 Aligned_cols=26 Identities=15% Similarity=0.009 Sum_probs=17.6
Q ss_pred cCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 172 SDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
.|.=+.+.+++|||||... -+|..+.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~--~~L~gll 114 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTA--RVLQALL 114 (312)
T ss_dssp CCEEEEEECCTTSCHHHHH--HHHHHHH
T ss_pred CCEEEEEECCCCchHHHHH--HHHHhhc
Confidence 3445778899999999743 3444443
No 257
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=45.97 E-value=14 Score=33.53 Aligned_cols=31 Identities=23% Similarity=0.245 Sum_probs=22.2
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
+..|.-+++++++|||||....+=++..+..
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~ 66 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE 66 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 4467889999999999998655433445443
No 258
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=45.77 E-value=9.2 Score=32.71 Aligned_cols=16 Identities=25% Similarity=0.291 Sum_probs=13.2
Q ss_pred EEEEcCCCchhHHHhH
Q 028267 176 CFACAPTGSGKTLAFL 191 (211)
Q Consensus 176 vi~~A~TGsGKTlaf~ 191 (211)
.++++++|+|||..+-
T Consensus 26 ~~i~G~NGsGKS~lle 41 (339)
T 3qkt_A 26 NLIIGQNGSGKSSLLD 41 (339)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 4578999999998754
No 259
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=45.47 E-value=7.5 Score=37.71 Aligned_cols=19 Identities=37% Similarity=0.567 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCchhHHHh
Q 028267 172 SDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf 190 (211)
.++.+++++++|||||...
T Consensus 237 ~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCEEEECSCTTSSHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH
Confidence 4678999999999999743
No 260
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=45.32 E-value=9.1 Score=32.24 Aligned_cols=16 Identities=25% Similarity=0.260 Sum_probs=13.7
Q ss_pred cEEEEcCCCchhHHHh
Q 028267 175 ECFACAPTGSGKTLAF 190 (211)
Q Consensus 175 dvi~~A~TGsGKTlaf 190 (211)
-+++.+++|+|||...
T Consensus 40 ~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIA 55 (373)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999754
No 261
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=45.28 E-value=9.3 Score=36.25 Aligned_cols=26 Identities=15% Similarity=0.204 Sum_probs=18.9
Q ss_pred cCCcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 172 SDRECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
.+.++++++++|+|||... --+...+
T Consensus 206 ~~~~vlL~G~~GtGKT~la-~~la~~l 231 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIA-EGLAWRI 231 (758)
T ss_dssp SSCEEEEECCTTSSHHHHH-HHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHH-HHHHHHH
Confidence 3578999999999999753 3344444
No 262
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=45.07 E-value=11 Score=31.29 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=20.1
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
-.|.-+.+.+++|||||..+ -+|..+.
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl--~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIA--KLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHH--HHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHH--HHHhccC
Confidence 45777889999999999843 4455544
No 263
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=44.91 E-value=6.6 Score=31.98 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=14.4
Q ss_pred CCcEEEEcCCCchhHHH
Q 028267 173 DRECFACAPTGSGKTLA 189 (211)
Q Consensus 173 G~dvi~~A~TGsGKTla 189 (211)
+.-+++++++|||||..
T Consensus 32 ~~~i~l~G~~GsGKSTl 48 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTI 48 (253)
T ss_dssp CEEEEEESCGGGTTHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45689999999999974
No 264
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=44.81 E-value=11 Score=31.83 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCchhHHHh
Q 028267 172 SDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf 190 (211)
.|.-+++++++|+|||...
T Consensus 104 ~g~vi~lvG~~GsGKTTl~ 122 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTL 122 (296)
T ss_dssp CSSEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4667889999999999754
No 265
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=44.71 E-value=14 Score=35.02 Aligned_cols=16 Identities=38% Similarity=0.484 Sum_probs=14.1
Q ss_pred cEEEEcCCCchhHHHh
Q 028267 175 ECFACAPTGSGKTLAF 190 (211)
Q Consensus 175 dvi~~A~TGsGKTlaf 190 (211)
.++..++||+|||...
T Consensus 490 ~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 5999999999999754
No 266
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=44.58 E-value=11 Score=32.38 Aligned_cols=27 Identities=19% Similarity=0.434 Sum_probs=20.2
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
-.|.-+.+++++|||||.. +-+|..+.
T Consensus 78 ~~Ge~vaivG~sGsGKSTL--l~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTI--LRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHH--HHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHH--HHHHHcCC
Confidence 3577889999999999984 34555544
No 267
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=44.19 E-value=11 Score=30.95 Aligned_cols=27 Identities=15% Similarity=0.162 Sum_probs=19.8
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
-.|.-+.+.+++|||||..+ -+|..+.
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl--~~l~Gl~ 59 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLT--KLIQRFY 59 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHH--HHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHH--HHHhcCC
Confidence 35777889999999999844 4455443
No 268
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=44.15 E-value=11 Score=30.48 Aligned_cols=26 Identities=27% Similarity=0.255 Sum_probs=19.1
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
..|.-+.+.+++|||||.-+ -+|..+
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl--~~l~Gl 57 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLL--MMIMGE 57 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHH--HHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHH--HHHhCC
Confidence 46777889999999999843 344444
No 269
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=44.06 E-value=17 Score=33.61 Aligned_cols=19 Identities=21% Similarity=0.132 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCchhHHHhH
Q 028267 173 DRECFACAPTGSGKTLAFL 191 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf~ 191 (211)
|.=+++++++|+|||....
T Consensus 293 GeVI~LVGpNGSGKTTLl~ 311 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIG 311 (503)
T ss_dssp TEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCcccHHHHHH
Confidence 3447789999999998543
No 270
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=43.93 E-value=18 Score=31.76 Aligned_cols=20 Identities=20% Similarity=0.210 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCchhHHHhH
Q 028267 172 SDRECFACAPTGSGKTLAFL 191 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf~ 191 (211)
.|.=+.+++++|+|||....
T Consensus 156 ~g~vi~lvG~nGsGKTTll~ 175 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLG 175 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHH
Confidence 35558889999999998553
No 271
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=43.89 E-value=12 Score=30.17 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=19.2
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
..|.=+.+.+++|||||..+ =+|..+
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLl--k~l~Gl 58 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLL--KTISTY 58 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHH--HHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHH--HHHhcC
Confidence 46777889999999999843 344444
No 272
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=43.72 E-value=21 Score=30.71 Aligned_cols=23 Identities=17% Similarity=0.079 Sum_probs=16.5
Q ss_pred EEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 176 CFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 176 vi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
+.+.+++|||||... -+|..+..
T Consensus 95 igI~GpsGSGKSTl~--~~L~~ll~ 117 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTS--RVLKALLS 117 (321)
T ss_dssp EEEECCTTSSHHHHH--HHHHHHHT
T ss_pred EEEECCCCCCHHHHH--HHHHHHhc
Confidence 777899999999753 44555543
No 273
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=43.63 E-value=12 Score=35.39 Aligned_cols=40 Identities=25% Similarity=0.367 Sum_probs=28.3
Q ss_pred CCcHHHHHHHhhHh----cCC-cEEEEcCCCchhHHHhHHHHHHHH
Q 028267 158 EPTPIQRQAIPVLL----SDR-ECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 158 ~pt~iQ~~aip~il----~G~-dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
.|+.-|..+|..+. .|. ..++.+.||||||++.+ -++.++
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a-~~~~~~ 56 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVS-NLIKEV 56 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHH-HHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHH-HHHHHh
Confidence 68888888887554 343 46778999999998765 344554
No 274
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=42.64 E-value=12 Score=29.07 Aligned_cols=19 Identities=21% Similarity=-0.108 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCchhHHHh
Q 028267 172 SDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf 190 (211)
.|.=+.+.+++|||||...
T Consensus 21 ~~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp SSEEEEEEECTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3555889999999998753
No 275
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=42.63 E-value=17 Score=38.62 Aligned_cols=29 Identities=21% Similarity=0.126 Sum_probs=20.4
Q ss_pred cCCcEEEEcCCCchhHHHhHHHHHHHHhcc
Q 028267 172 SDRECFACAPTGSGKTLAFLCPMLMKLRVL 201 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf~lPil~~l~~~ 201 (211)
.|+-+++++++|||||+-. +-++..-..+
T Consensus 1081 ~g~~~l~~G~~g~GKT~la-~~~~~~~~~~ 1109 (1706)
T 3cmw_A 1081 MGRIVEIYGPESSGKTTLT-LQVIAAAQRE 1109 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHH-HHHHHHHHHT
T ss_pred CCCEEEEEcCCCCChHHHH-HHHHHHhhhc
Confidence 4567999999999999854 4444443333
No 276
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=42.42 E-value=11 Score=34.67 Aligned_cols=17 Identities=29% Similarity=0.460 Sum_probs=14.5
Q ss_pred CcEEEEcCCCchhHHHh
Q 028267 174 RECFACAPTGSGKTLAF 190 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf 190 (211)
+.+++.+++|||||+..
T Consensus 65 ~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp SEEEEECSSSSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35999999999999854
No 277
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=42.10 E-value=9 Score=29.36 Aligned_cols=20 Identities=20% Similarity=0.184 Sum_probs=16.5
Q ss_pred hcCCcEEEEcCCCchhHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf 190 (211)
..|.-+++++++|+|||..+
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl 43 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSAL 43 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHH
Confidence 45667999999999999754
No 278
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=41.93 E-value=11 Score=30.80 Aligned_cols=15 Identities=27% Similarity=0.332 Sum_probs=13.4
Q ss_pred cEEEEcCCCchhHHH
Q 028267 175 ECFACAPTGSGKTLA 189 (211)
Q Consensus 175 dvi~~A~TGsGKTla 189 (211)
.+++.+++|+|||..
T Consensus 44 ~~ll~G~~G~GKt~l 58 (323)
T 1sxj_B 44 HMIISGMPGIGKTTS 58 (323)
T ss_dssp CEEEECSTTSSHHHH
T ss_pred eEEEECcCCCCHHHH
Confidence 499999999999974
No 279
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=41.82 E-value=12 Score=31.10 Aligned_cols=27 Identities=22% Similarity=0.260 Sum_probs=19.4
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
..|.=+.+.+++|||||.. +-+|..+.
T Consensus 35 ~~Ge~~~liG~nGsGKSTL--l~~l~Gl~ 61 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTL--LRLLTGYL 61 (266)
T ss_dssp ETTCEEEEECCTTSCHHHH--HHHHTSSS
T ss_pred cCCCEEEEECCCCCcHHHH--HHHHhcCC
Confidence 4577788999999999984 34444443
No 280
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=41.80 E-value=11 Score=30.83 Aligned_cols=28 Identities=21% Similarity=0.389 Sum_probs=20.3
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+-.|.-+.+.+++|||||..+ -+|..+.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl--~~l~Gl~ 52 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIF--SLLERFY 52 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHH--HHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHH--HHHhcCC
Confidence 345777889999999999843 4455544
No 281
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=41.74 E-value=12 Score=31.40 Aligned_cols=27 Identities=11% Similarity=0.016 Sum_probs=19.5
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
-.|.=+.+.+|+|||||.. +-+|..+.
T Consensus 32 ~~Ge~~~iiGpnGsGKSTL--l~~l~Gl~ 58 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTL--FQNFNGIL 58 (275)
T ss_dssp ETTSEEEEECCTTSSHHHH--HHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHH--HHHHHcCC
Confidence 3577788899999999984 34554443
No 282
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=41.47 E-value=13 Score=30.29 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=19.4
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
-.|.=+.+.+++|||||..+ =+|..+.
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl--~~l~Gl~ 56 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTL--SAIAGLV 56 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHH--HHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHH--HHHhCCC
Confidence 35777889999999999843 4444443
No 283
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=41.40 E-value=13 Score=31.67 Aligned_cols=18 Identities=28% Similarity=0.230 Sum_probs=14.4
Q ss_pred CCcEEE--EcCCCchhHHHh
Q 028267 173 DRECFA--CAPTGSGKTLAF 190 (211)
Q Consensus 173 G~dvi~--~A~TGsGKTlaf 190 (211)
+..+++ .+++|+|||...
T Consensus 50 ~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHH
Confidence 346788 899999999853
No 284
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=41.31 E-value=13 Score=30.77 Aligned_cols=27 Identities=19% Similarity=0.148 Sum_probs=19.1
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
-.|.=+.+.+++|||||..+ =+|..+.
T Consensus 30 ~~Ge~~~liG~nGsGKSTLl--k~l~Gl~ 56 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFL--RCINFLE 56 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHH--HHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHH--HHHhcCC
Confidence 35677889999999999843 3444443
No 285
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=41.20 E-value=13 Score=30.76 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=19.3
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
-.|.-+.+.+++|||||..+ =+|..+.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl--~~i~Gl~ 57 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLL--QIVAGLI 57 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHH--HHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHH--HHHhCCC
Confidence 35777889999999999844 3444443
No 286
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=41.00 E-value=13 Score=30.43 Aligned_cols=26 Identities=19% Similarity=0.139 Sum_probs=19.5
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
..|.-+.+.+++|+|||..+ =+|..+
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl--k~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLG--KILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHH--HHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHH--HHHhCC
Confidence 46777889999999999854 445554
No 287
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=40.91 E-value=12 Score=30.08 Aligned_cols=27 Identities=22% Similarity=0.123 Sum_probs=19.1
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
-.|.=+.+.+++|||||.- +=+|..+.
T Consensus 28 ~~Ge~~~iiG~nGsGKSTL--l~~l~Gl~ 54 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTL--LYILGLLD 54 (224)
T ss_dssp ETTCEEEEEECTTSCHHHH--HHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHH--HHHHhcCC
Confidence 3577788899999999974 34444443
No 288
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=40.82 E-value=12 Score=36.34 Aligned_cols=16 Identities=38% Similarity=0.414 Sum_probs=14.0
Q ss_pred cEEEEcCCCchhHHHh
Q 028267 175 ECFACAPTGSGKTLAF 190 (211)
Q Consensus 175 dvi~~A~TGsGKTlaf 190 (211)
.+++.++||+|||...
T Consensus 590 ~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEBSCSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6899999999999753
No 289
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=40.69 E-value=14 Score=30.86 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=19.6
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
-.|.-+.+.+++|||||.. +=+|..+.
T Consensus 43 ~~Ge~~~i~G~nGsGKSTL--lk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTV--AALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHH--HHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHH--HHHHhcCC
Confidence 4577788999999999984 34455443
No 290
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=40.51 E-value=13 Score=30.49 Aligned_cols=27 Identities=19% Similarity=0.290 Sum_probs=19.4
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
-.|.-+.+.+++|||||..+ =+|..+.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl--k~l~Gl~ 57 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLI--NVITGFL 57 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHH--HHHTTSS
T ss_pred eCCCEEEEECCCCCCHHHHH--HHHhCCC
Confidence 45777889999999999843 4444443
No 291
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=40.49 E-value=14 Score=30.73 Aligned_cols=26 Identities=23% Similarity=0.193 Sum_probs=19.4
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
..|.=+.+.+++|+|||..+ -+|..+
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLl--k~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLS--ATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHH--HHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHH--HHHhCC
Confidence 45777889999999999843 445554
No 292
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=40.23 E-value=14 Score=30.53 Aligned_cols=27 Identities=15% Similarity=0.313 Sum_probs=19.5
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
+..|.-+.+.+++|+|||.-+ =+|..+
T Consensus 23 i~~Ge~~~liG~NGsGKSTLl--k~l~Gl 49 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLL--ARMAGM 49 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHH--HHHTTS
T ss_pred EcCCCEEEEECCCCCcHHHHH--HHHhCC
Confidence 346777889999999999854 344444
No 293
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=39.94 E-value=21 Score=31.51 Aligned_cols=18 Identities=33% Similarity=0.337 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCchhHHH
Q 028267 172 SDRECFACAPTGSGKTLA 189 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTla 189 (211)
.|+-+++.+++|+|||..
T Consensus 168 ~~~~i~l~G~~GsGKSTl 185 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTL 185 (377)
T ss_dssp TCCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567899999999999874
No 294
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=39.94 E-value=11 Score=30.50 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=15.0
Q ss_pred cCCcEEEEcCCCchhHHH
Q 028267 172 SDRECFACAPTGSGKTLA 189 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTla 189 (211)
.+.-|++.+++|||||..
T Consensus 28 ~~~~I~l~G~~GsGKsT~ 45 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQ 45 (243)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 455799999999999864
No 295
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=39.73 E-value=11 Score=31.43 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=11.8
Q ss_pred EEEEcCCCchhHHHh
Q 028267 176 CFACAPTGSGKTLAF 190 (211)
Q Consensus 176 vi~~A~TGsGKTlaf 190 (211)
++..+++|+|||...
T Consensus 51 ~L~~G~~G~GKT~la 65 (324)
T 3u61_B 51 ILHSPSPGTGKTTVA 65 (324)
T ss_dssp EEECSSTTSSHHHHH
T ss_pred EEeeCcCCCCHHHHH
Confidence 566677999999864
No 296
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=39.67 E-value=11 Score=31.82 Aligned_cols=15 Identities=40% Similarity=0.680 Sum_probs=12.3
Q ss_pred cEEEEcCCCchhHHH
Q 028267 175 ECFACAPTGSGKTLA 189 (211)
Q Consensus 175 dvi~~A~TGsGKTla 189 (211)
=|.+++++|||||..
T Consensus 33 ii~I~G~sGsGKSTl 47 (290)
T 1odf_A 33 FIFFSGPQGSGKSFT 47 (290)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367789999999864
No 297
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=39.66 E-value=4 Score=39.61 Aligned_cols=19 Identities=32% Similarity=0.539 Sum_probs=16.2
Q ss_pred hcCCcEEEEcCCCchhHHH
Q 028267 171 LSDRECFACAPTGSGKTLA 189 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTla 189 (211)
..+..+++.+++|||||..
T Consensus 509 ~~~~~vLL~GppGtGKT~L 527 (806)
T 1ypw_A 509 TPSKGVLFYGPPGCGKTLL 527 (806)
T ss_dssp CCCCCCCCBCCTTSSHHHH
T ss_pred CCCceeEEECCCCCCHHHH
Confidence 3467899999999999984
No 298
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=39.66 E-value=14 Score=27.73 Aligned_cols=17 Identities=29% Similarity=0.384 Sum_probs=14.3
Q ss_pred CCcEEEEcCCCchhHHH
Q 028267 173 DRECFACAPTGSGKTLA 189 (211)
Q Consensus 173 G~dvi~~A~TGsGKTla 189 (211)
...|++.+++|+|||..
T Consensus 48 ~~~i~vvG~~g~GKSsl 64 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSL 64 (193)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 35699999999999964
No 299
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=39.00 E-value=15 Score=30.41 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=19.4
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
-.|.=+.+.+++|||||..+ =+|..+.
T Consensus 39 ~~Gei~~l~G~NGsGKSTLl--k~l~Gl~ 65 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTL--RIISTLI 65 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHH--HHHTTSS
T ss_pred cCCcEEEEECCCCCCHHHHH--HHHhcCC
Confidence 35777889999999999843 4444443
No 300
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=38.79 E-value=20 Score=30.81 Aligned_cols=28 Identities=14% Similarity=0.088 Sum_probs=20.0
Q ss_pred Hhc--CCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 170 LLS--DRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 170 il~--G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+.. |.-+.+++++|||||.. +-+|..+.
T Consensus 165 v~~~lg~k~~IvG~nGsGKSTL--lk~L~gl~ 194 (365)
T 1lw7_A 165 ARPFFAKTVAILGGESSGKSVL--VNKLAAVF 194 (365)
T ss_dssp TGGGTCEEEEEECCTTSHHHHH--HHHHHHHT
T ss_pred HHHhhhCeEEEECCCCCCHHHH--HHHHHHHh
Confidence 445 77788999999999973 34455443
No 301
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=38.57 E-value=15 Score=30.52 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=19.5
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
-.|.-+.+.+++|||||.-+ =+|..+.
T Consensus 48 ~~Gei~~liG~NGsGKSTLl--k~l~Gl~ 74 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFL--RCLNLLE 74 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHH--HHHTTSS
T ss_pred cCCCEEEEEcCCCCcHHHHH--HHHHcCC
Confidence 35677889999999999843 4454443
No 302
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=38.38 E-value=15 Score=30.23 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=18.8
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
-.|.-+.+.+++|||||..+ -+|..+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl--~~l~Gl 54 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLL--DLLLGI 54 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHH--HHHTTS
T ss_pred CCCCEEEEECCCCCCHHHHH--HHHhCC
Confidence 35777889999999999843 444444
No 303
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=38.28 E-value=12 Score=36.57 Aligned_cols=17 Identities=41% Similarity=0.640 Sum_probs=15.0
Q ss_pred CcEEEEcCCCchhHHHh
Q 028267 174 RECFACAPTGSGKTLAF 190 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf 190 (211)
+.||+.+|+|||||+..
T Consensus 239 ~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 57999999999999853
No 304
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=38.16 E-value=15 Score=30.78 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=19.4
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
-.|.-+.+.+++|||||.-+ =+|..+.
T Consensus 45 ~~Ge~~~liG~NGsGKSTLl--k~l~Gl~ 71 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLL--NILNAYE 71 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHH--HHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHH--HHHhCCC
Confidence 35777889999999999843 4444443
No 305
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=37.68 E-value=19 Score=29.62 Aligned_cols=17 Identities=12% Similarity=-0.076 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCchhHHH
Q 028267 173 DRECFACAPTGSGKTLA 189 (211)
Q Consensus 173 G~dvi~~A~TGsGKTla 189 (211)
|+-+++.++.|+|||..
T Consensus 31 ~~~v~i~G~~G~GKT~L 47 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSL 47 (350)
T ss_dssp CSEEEEECCTTSSHHHH
T ss_pred CCeEEEECCCcCCHHHH
Confidence 57799999999999974
No 306
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=37.52 E-value=19 Score=38.79 Aligned_cols=26 Identities=23% Similarity=0.220 Sum_probs=19.5
Q ss_pred CCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 173 DRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
|+.+++++|+|+|||... +.++....
T Consensus 1427 g~~vll~GppGtGKT~LA-~ala~ea~ 1452 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLT-LQVIAAAQ 1452 (2050)
T ss_dssp TSEEEEECCTTSSHHHHH-HHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHH-HHHHHHHH
Confidence 789999999999999854 34444433
No 307
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=37.41 E-value=19 Score=29.23 Aligned_cols=19 Identities=21% Similarity=0.202 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCchhHHHh
Q 028267 172 SDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf 190 (211)
.|.-+.+.+++|||||...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLC 44 (252)
T ss_dssp TSCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4667889999999998743
No 308
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=35.96 E-value=26 Score=33.65 Aligned_cols=45 Identities=13% Similarity=0.073 Sum_probs=28.3
Q ss_pred HHHHHHHHHcCCC----CCcHHHHHHHhhHhc-C--CcEEEEcCCCchhHHH
Q 028267 145 SYLLRNLAELGYK----EPTPIQRQAIPVLLS-D--RECFACAPTGSGKTLA 189 (211)
Q Consensus 145 ~~ll~~l~~~g~~----~pt~iQ~~aip~il~-G--~dvi~~A~TGsGKTla 189 (211)
+.++...+..... +++.|=..|+-.++. + ..||+.+.+|+|||-+
T Consensus 59 ~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~ 110 (697)
T 1lkx_A 59 ESDIKAYNGRYKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEA 110 (697)
T ss_dssp HHHHHHHSSCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHH
T ss_pred HHHHHHHhCCCCCCCCchHHHHHHHHHHHHHhcCCCcEEEecCCCCCCchhh
Confidence 4555544333222 334466666665543 3 4599999999999988
No 309
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=35.36 E-value=14 Score=29.90 Aligned_cols=17 Identities=29% Similarity=0.399 Sum_probs=13.4
Q ss_pred cCCcEEEEcCCCchhHH
Q 028267 172 SDRECFACAPTGSGKTL 188 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTl 188 (211)
..+=|++.+++||||+.
T Consensus 28 k~kiI~llGpPGsGKgT 44 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGT 44 (217)
T ss_dssp SCEEEEEECCTTCCHHH
T ss_pred CCcEEEEECCCCCCHHH
Confidence 34557889999999965
No 310
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=35.35 E-value=17 Score=28.78 Aligned_cols=17 Identities=24% Similarity=0.229 Sum_probs=14.3
Q ss_pred CcEEEEcCCCchhHHHh
Q 028267 174 RECFACAPTGSGKTLAF 190 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf 190 (211)
..|++++++|+|||..+
T Consensus 30 ~~i~lvG~~g~GKStli 46 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATG 46 (239)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46999999999999643
No 311
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=35.04 E-value=20 Score=33.05 Aligned_cols=28 Identities=14% Similarity=0.240 Sum_probs=20.2
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
-.|.-+.+++++|||||.. +-+|..+..
T Consensus 367 ~~G~~~~ivG~sGsGKSTl--l~~l~g~~~ 394 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTI--ANLFTRFYD 394 (582)
T ss_pred CCCCEEEEECCCCCCHHHH--HHHHhcCCC
Confidence 3567788999999999984 345555543
No 312
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=34.93 E-value=18 Score=30.62 Aligned_cols=26 Identities=27% Similarity=0.255 Sum_probs=19.1
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
-.|.-+.+.+++|||||..+ =+|..+
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLl--k~l~Gl 87 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLL--MMIMGE 87 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHH--HHHTTS
T ss_pred cCCCEEEEECCCCCcHHHHH--HHHhcC
Confidence 35777889999999999854 344444
No 313
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=34.92 E-value=20 Score=29.27 Aligned_cols=23 Identities=26% Similarity=0.615 Sum_probs=16.5
Q ss_pred EEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 176 CFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 176 vi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
+.+.+++|||||..+ -+|..+..
T Consensus 27 ~~liG~nGsGKSTLl--~~l~Gl~~ 49 (240)
T 2onk_A 27 CVLLGPTGAGKSVFL--ELIAGIVK 49 (240)
T ss_dssp EEEECCTTSSHHHHH--HHHHTSSC
T ss_pred EEEECCCCCCHHHHH--HHHhCCCC
Confidence 668999999999843 44555443
No 314
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=34.58 E-value=17 Score=27.22 Aligned_cols=18 Identities=17% Similarity=0.058 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCchhHHHh
Q 028267 173 DRECFACAPTGSGKTLAF 190 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf 190 (211)
...|++++.+|+|||..+
T Consensus 23 ~~~i~v~G~~~~GKSsli 40 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFI 40 (195)
T ss_dssp CCEEEEEEBTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 356999999999999754
No 315
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=34.53 E-value=14 Score=30.45 Aligned_cols=24 Identities=13% Similarity=0.021 Sum_probs=17.2
Q ss_pred CcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 174 RECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
.-+++.++.|+|||... .-++..+
T Consensus 31 ~~v~i~G~~G~GKT~L~-~~~~~~~ 54 (357)
T 2fna_A 31 PITLVLGLRRTGKSSII-KIGINEL 54 (357)
T ss_dssp SEEEEEESTTSSHHHHH-HHHHHHH
T ss_pred CcEEEECCCCCCHHHHH-HHHHHhc
Confidence 46899999999999743 3344443
No 316
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=34.41 E-value=18 Score=27.61 Aligned_cols=16 Identities=19% Similarity=0.314 Sum_probs=13.6
Q ss_pred cEEEEcCCCchhHHHh
Q 028267 175 ECFACAPTGSGKTLAF 190 (211)
Q Consensus 175 dvi~~A~TGsGKTlaf 190 (211)
-+++.+++|+|||..+
T Consensus 31 kv~lvG~~g~GKSTLl 46 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLL 46 (191)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4889999999999843
No 317
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=34.23 E-value=21 Score=28.60 Aligned_cols=19 Identities=21% Similarity=0.010 Sum_probs=14.6
Q ss_pred cCCcEEEEcCCCchhHHHh
Q 028267 172 SDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf 190 (211)
.|.=+.+.+++|||||...
T Consensus 24 ~g~iigI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVC 42 (245)
T ss_dssp CSEEEEEECSTTSSHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 3444778899999999854
No 318
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=33.91 E-value=16 Score=31.30 Aligned_cols=24 Identities=17% Similarity=0.025 Sum_probs=17.9
Q ss_pred CCcEEEEcCCCchhHHHhHHHHHHH
Q 028267 173 DRECFACAPTGSGKTLAFLCPMLMK 197 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf~lPil~~ 197 (211)
|.-+++.+++|||||. |++-++..
T Consensus 122 G~i~~I~G~~GsGKTt-la~~la~~ 145 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQ-LSHTLCVT 145 (343)
T ss_dssp SEEEEEECCTTCTHHH-HHHHHHHH
T ss_pred CeEEEEECCCCCCHHH-HHHHHHHH
Confidence 4568899999999998 44455544
No 319
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=33.86 E-value=14 Score=30.97 Aligned_cols=24 Identities=21% Similarity=0.122 Sum_probs=17.5
Q ss_pred CCcEEEEcCCCchhHHHhHHHHHHH
Q 028267 173 DRECFACAPTGSGKTLAFLCPMLMK 197 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf~lPil~~ 197 (211)
|.-+++.+++|+|||.. ++-++..
T Consensus 98 g~i~~i~G~~gsGKT~l-a~~la~~ 121 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQI-MHQSCVN 121 (322)
T ss_dssp TEEEEEEESTTSSHHHH-HHHHHHH
T ss_pred CeEEEEECCCCCCHHHH-HHHHHHH
Confidence 46689999999999974 4444443
No 320
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=33.72 E-value=20 Score=30.60 Aligned_cols=18 Identities=22% Similarity=0.250 Sum_probs=14.2
Q ss_pred CCcEEEEcCCCchhHHHh
Q 028267 173 DRECFACAPTGSGKTLAF 190 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf 190 (211)
|.=+++++++|+|||...
T Consensus 104 ~~vi~ivG~~GsGKTTl~ 121 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSC 121 (306)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CeEEEEEcCCCChHHHHH
Confidence 445778999999999643
No 321
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=33.58 E-value=15 Score=35.55 Aligned_cols=25 Identities=16% Similarity=0.189 Sum_probs=18.0
Q ss_pred CCcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 173 DRECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
..++++++++|+|||... --+...+
T Consensus 191 ~~~vlL~G~pG~GKT~la-~~la~~l 215 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIV-EGLAQRI 215 (854)
T ss_dssp CCCCEEEECTTSCHHHHH-HHHHHHH
T ss_pred CCceEEEcCCCCCHHHHH-HHHHHHH
Confidence 357999999999999743 3444444
No 322
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=33.57 E-value=29 Score=33.81 Aligned_cols=46 Identities=11% Similarity=0.214 Sum_probs=28.5
Q ss_pred HHHHHHHHHcCCC----CCcHHHHHHHhhHhc-C--CcEEEEcCCCchhHHHh
Q 028267 145 SYLLRNLAELGYK----EPTPIQRQAIPVLLS-D--RECFACAPTGSGKTLAF 190 (211)
Q Consensus 145 ~~ll~~l~~~g~~----~pt~iQ~~aip~il~-G--~dvi~~A~TGsGKTlaf 190 (211)
+.++......... |++.|=..|+-.++. + ..||+.+.+|+|||.+-
T Consensus 121 ~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~t 173 (795)
T 1w7j_A 121 EDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSA 173 (795)
T ss_dssp HHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHcCCCccCCCccHhHHHHHHHHHhHhcCCCeEEEEeCCCCCCcchHH
Confidence 4555544433322 233465666665553 3 45999999999999883
No 323
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=33.50 E-value=22 Score=29.46 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=17.9
Q ss_pred CCcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 173 DRECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
|.-+.+.+++|||||..+ =+|..+
T Consensus 30 Ge~~~i~G~NGsGKSTLl--k~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLL--RAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHH--HHHTTS
T ss_pred CEEEEEECCCCCCHHHHH--HHHhCC
Confidence 777889999999999854 344443
No 324
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=33.33 E-value=18 Score=26.81 Aligned_cols=17 Identities=18% Similarity=0.169 Sum_probs=14.4
Q ss_pred CcEEEEcCCCchhHHHh
Q 028267 174 RECFACAPTGSGKTLAF 190 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf 190 (211)
..|++.+.+|+|||..+
T Consensus 24 ~~i~v~G~~~~GKSsli 40 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLL 40 (195)
T ss_dssp CEEEEEEBTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46999999999999654
No 325
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=33.27 E-value=36 Score=32.61 Aligned_cols=37 Identities=24% Similarity=0.254 Sum_probs=28.0
Q ss_pred CCcHHHHHHHhhHhcC--CcEEEEcCCCchhHHHhHHHH
Q 028267 158 EPTPIQRQAIPVLLSD--RECFACAPTGSGKTLAFLCPM 194 (211)
Q Consensus 158 ~pt~iQ~~aip~il~G--~dvi~~A~TGsGKTlaf~lPi 194 (211)
.+|.-|++++..++.- .-+++.|..|.|||.+..+-+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~ 213 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLI 213 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHH
Confidence 6899999999877652 236889999999996654433
No 326
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=33.17 E-value=15 Score=31.03 Aligned_cols=15 Identities=33% Similarity=0.432 Sum_probs=12.7
Q ss_pred cEEEEcCCCchhHHH
Q 028267 175 ECFACAPTGSGKTLA 189 (211)
Q Consensus 175 dvi~~A~TGsGKTla 189 (211)
=.++++++|+|||..
T Consensus 26 ~~~i~G~NGsGKS~l 40 (322)
T 1e69_A 26 VTAIVGPNGSGKSNI 40 (322)
T ss_dssp EEEEECCTTTCSTHH
T ss_pred cEEEECCCCCcHHHH
Confidence 467799999999984
No 327
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=33.05 E-value=16 Score=32.28 Aligned_cols=16 Identities=25% Similarity=0.289 Sum_probs=13.3
Q ss_pred cEEEEcCCCchhHHHh
Q 028267 175 ECFACAPTGSGKTLAF 190 (211)
Q Consensus 175 dvi~~A~TGsGKTlaf 190 (211)
=||+++++|||||...
T Consensus 260 lIil~G~pGSGKSTla 275 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFI 275 (416)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4888999999999743
No 328
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=32.99 E-value=30 Score=33.93 Aligned_cols=40 Identities=20% Similarity=0.346 Sum_probs=26.3
Q ss_pred cHHHHHHHhhHhc-C--CcEEEEcCCCchhHHH--hHHHHHHHHh
Q 028267 160 TPIQRQAIPVLLS-D--RECFACAPTGSGKTLA--FLCPMLMKLR 199 (211)
Q Consensus 160 t~iQ~~aip~il~-G--~dvi~~A~TGsGKTla--f~lPil~~l~ 199 (211)
+.|=..|+-.++. + ..||+.+.+|+|||-+ +++.-|..+.
T Consensus 153 faiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~i~~yla~~~ 197 (837)
T 1kk8_A 153 FSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIMYLAKVA 197 (837)
T ss_dssp HHHHHHHHHHHHHHTSEEEEEEECSTTSSHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcCCCcEEEEeCCCCCCchhhHHHHHHHHHHhc
Confidence 3455566665553 3 4599999999999988 4444444443
No 329
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=32.98 E-value=19 Score=27.84 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=17.2
Q ss_pred CcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 174 RECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
.-+++++.+|+|||..+ --++..+
T Consensus 31 ~~i~i~G~~g~GKTTl~-~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLI-ERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHH-HHHHHHH
T ss_pred eEEEEEcCCCCCHHHHH-HHHHHHh
Confidence 46889999999999643 3444443
No 330
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=32.88 E-value=19 Score=28.99 Aligned_cols=15 Identities=27% Similarity=0.102 Sum_probs=13.1
Q ss_pred cEEEEcCCCchhHHH
Q 028267 175 ECFACAPTGSGKTLA 189 (211)
Q Consensus 175 dvi~~A~TGsGKTla 189 (211)
-|.+.++.|||||..
T Consensus 24 iI~I~G~~GSGKST~ 38 (252)
T 1uj2_A 24 LIGVSGGTASGKSSV 38 (252)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 389999999999965
No 331
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=32.68 E-value=39 Score=30.59 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=17.8
Q ss_pred CcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 174 RECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
.=+++++++|+|||.... -+...|..
T Consensus 101 ~vIlivG~~G~GKTTt~~-kLA~~l~~ 126 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVA-KLARYFQK 126 (443)
T ss_dssp EEEEEECCTTSSHHHHHH-HHHHHHHT
T ss_pred eEEEEECcCCCCHHHHHH-HHHHHHHH
Confidence 458889999999998653 33334433
No 332
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=32.13 E-value=16 Score=32.03 Aligned_cols=18 Identities=22% Similarity=0.176 Sum_probs=14.9
Q ss_pred cCCcEEEEcCCCchhHHH
Q 028267 172 SDRECFACAPTGSGKTLA 189 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTla 189 (211)
.|+-+++.+++|+|||..
T Consensus 122 ~gsviLI~GpPGsGKTtL 139 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPL 139 (331)
T ss_dssp ESEEEEEECSCSSSHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 456688999999999963
No 333
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=32.02 E-value=20 Score=36.21 Aligned_cols=47 Identities=15% Similarity=0.144 Sum_probs=30.7
Q ss_pred CHHHHHHHHHcCCCC----CcHHHHHHHhhHhc-C--CcEEEEcCCCchhHHHh
Q 028267 144 ESYLLRNLAELGYKE----PTPIQRQAIPVLLS-D--RECFACAPTGSGKTLAF 190 (211)
Q Consensus 144 ~~~ll~~l~~~g~~~----pt~iQ~~aip~il~-G--~dvi~~A~TGsGKTlaf 190 (211)
.+..++......... ++.|-..|+-.++. + ..||+.+.+|+|||-+-
T Consensus 108 ~~~~~~~Y~g~~~~~lpPHIfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTest 161 (1052)
T 4anj_A 108 SSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENT 161 (1052)
T ss_dssp SHHHHHHHTTCCBTTBCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred CHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHH
Confidence 456666665444433 33455666655543 3 46999999999999884
No 334
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=31.97 E-value=16 Score=29.37 Aligned_cols=18 Identities=33% Similarity=0.259 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCchhHHH
Q 028267 172 SDRECFACAPTGSGKTLA 189 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTla 189 (211)
.|.-+++.++.|||||..
T Consensus 25 ~g~~i~i~G~~GsGKsT~ 42 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTV 42 (229)
T ss_dssp CCEEEEEECCTTSCHHHH
T ss_pred CCeEEEEEcCCCCCHHHH
Confidence 577799999999999874
No 335
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=31.97 E-value=16 Score=33.72 Aligned_cols=19 Identities=16% Similarity=0.151 Sum_probs=15.9
Q ss_pred hcCCcEEEEcCCCchhHHH
Q 028267 171 LSDRECFACAPTGSGKTLA 189 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTla 189 (211)
-.|.-+.+++|+|||||..
T Consensus 365 ~~G~~~~ivG~sGsGKSTl 383 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTL 383 (578)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCChHHHH
Confidence 3577788999999999974
No 336
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=31.92 E-value=21 Score=31.70 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=20.5
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
-.|.-+.+.+|+|||||.. +-+|..|.
T Consensus 45 ~~Ge~~~llGpsGsGKSTL--Lr~iaGl~ 71 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTL--LSAFLRLL 71 (390)
T ss_dssp CTTCEEEEEESTTSSHHHH--HHHHHTCS
T ss_pred cCCCEEEEECCCCChHHHH--HHHHhCCC
Confidence 4677899999999999984 35555554
No 337
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=31.50 E-value=23 Score=29.80 Aligned_cols=25 Identities=16% Similarity=0.061 Sum_probs=16.9
Q ss_pred CCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 173 DRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
|.=+.+.+++|||||... -+|..+.
T Consensus 80 g~iigI~G~~GsGKSTl~--~~L~~~l 104 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTA--RVLQALL 104 (308)
T ss_dssp CEEEEEEECTTSSHHHHH--HHHHHHH
T ss_pred CEEEEEECCCCCCHHHHH--HHHHHHH
Confidence 344667899999999743 4455543
No 338
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=31.37 E-value=32 Score=34.36 Aligned_cols=56 Identities=13% Similarity=0.145 Sum_probs=33.0
Q ss_pred CHHHHHHHHHcCCC----CCcHHHHHHHhhHhc-C--CcEEEEcCCCchhHHH--hHHHHHHHHh
Q 028267 144 ESYLLRNLAELGYK----EPTPIQRQAIPVLLS-D--RECFACAPTGSGKTLA--FLCPMLMKLR 199 (211)
Q Consensus 144 ~~~ll~~l~~~g~~----~pt~iQ~~aip~il~-G--~dvi~~A~TGsGKTla--f~lPil~~l~ 199 (211)
.+.++......... |++.|=..|+-.++. + ..||+.+.+|+|||-+ +++.-|..+.
T Consensus 110 ~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i~~yla~~~ 174 (995)
T 2ycu_A 110 TEAIVEMYRGKKRHEVPPHVYAVTEGAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAHVA 174 (995)
T ss_dssp SHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECBTTSSHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHhcCCccCCCCchHHHHhHHHHHHHHhcCCCcEEEecCCCCCCchhhHHHHHHHHHHhc
Confidence 34555544433222 233455566665543 3 4599999999999988 4444444443
No 339
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=31.09 E-value=21 Score=34.71 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=22.1
Q ss_pred cHHHHHHHhhHhc-C--CcEEEEcCCCchhHHHh
Q 028267 160 TPIQRQAIPVLLS-D--RECFACAPTGSGKTLAF 190 (211)
Q Consensus 160 t~iQ~~aip~il~-G--~dvi~~A~TGsGKTlaf 190 (211)
+.|=..|+-.++. + ..||+.+.+|+|||-+-
T Consensus 156 faiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~t 189 (770)
T 1w9i_A 156 FAISDVAYRSMLDDRQNQSLLITGESGAGKTENT 189 (770)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHHHHhhcCCcEEEEecCCCCcchHHH
Confidence 3455566665543 3 45999999999999873
No 340
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=31.09 E-value=35 Score=31.18 Aligned_cols=23 Identities=13% Similarity=0.193 Sum_probs=16.9
Q ss_pred EEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 176 CFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 176 vi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
+.+.+++|+|||.. +-+|..+..
T Consensus 32 ~~liG~nGsGKSTL--l~~l~Gl~~ 54 (483)
T 3euj_A 32 TTLSGGNGAGKSTT--MAGFVTALI 54 (483)
T ss_dssp EEEECCTTSSHHHH--HHHHHHHHC
T ss_pred EEEECCCCCcHHHH--HHHHhcCCC
Confidence 56789999999984 455666554
No 341
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=30.96 E-value=21 Score=34.77 Aligned_cols=31 Identities=23% Similarity=0.359 Sum_probs=22.4
Q ss_pred cHHHHHHHhhHhc-C--CcEEEEcCCCchhHHHh
Q 028267 160 TPIQRQAIPVLLS-D--RECFACAPTGSGKTLAF 190 (211)
Q Consensus 160 t~iQ~~aip~il~-G--~dvi~~A~TGsGKTlaf 190 (211)
+.|=..|+-.++. + ..||+.+.+|+|||-+-
T Consensus 155 faiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~t 188 (783)
T 4db1_A 155 FSISDNAYQYMLTDRENQSILITGESGAGKTVNT 188 (783)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHHHHHHHHhhCCCceEEEeCCCCCCCchHH
Confidence 3465666655543 3 45999999999999984
No 342
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=30.75 E-value=21 Score=34.70 Aligned_cols=46 Identities=15% Similarity=0.163 Sum_probs=28.9
Q ss_pred CHHHHHHHHHcCCCC----CcHHHHHHHhhHhc-C--CcEEEEcCCCchhHHH
Q 028267 144 ESYLLRNLAELGYKE----PTPIQRQAIPVLLS-D--RECFACAPTGSGKTLA 189 (211)
Q Consensus 144 ~~~ll~~l~~~g~~~----pt~iQ~~aip~il~-G--~dvi~~A~TGsGKTla 189 (211)
.+.++.......... ++.|=..|+-.++. + ..||+.+.+|+|||-+
T Consensus 104 ~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~ 156 (784)
T 2v26_A 104 SSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTEN 156 (784)
T ss_dssp SHHHHHHHTTCCTTSSCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred CHHHHHHHhCCCcccCCchHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCceeh
Confidence 345555544333322 24566666666553 3 4699999999999987
No 343
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=30.73 E-value=32 Score=34.43 Aligned_cols=55 Identities=16% Similarity=0.160 Sum_probs=32.4
Q ss_pred CHHHHHHHHHcCCCCC----cHHHHHHHhhHhc-C--CcEEEEcCCCchhHHH--hHHHHHHHH
Q 028267 144 ESYLLRNLAELGYKEP----TPIQRQAIPVLLS-D--RECFACAPTGSGKTLA--FLCPMLMKL 198 (211)
Q Consensus 144 ~~~ll~~l~~~g~~~p----t~iQ~~aip~il~-G--~dvi~~A~TGsGKTla--f~lPil~~l 198 (211)
.+.++..........+ +.|=..|+-.++. + ..||+.+.+|+|||-+ +++.-|..+
T Consensus 136 ~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i~~yla~~ 199 (1010)
T 1g8x_A 136 TQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASV 199 (1010)
T ss_dssp SHHHHHHHTTCCTTTSCCCHHHHHHHHHHHHHHHTCCEEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHhcCCCccCCCccHHHHHHHHHHHHHhcCCCeEEEEeCCCCCCcchHHHHHHHHHHHh
Confidence 3555555544433332 3355566655543 3 4599999999999988 334444443
No 344
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=30.71 E-value=30 Score=29.04 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=20.8
Q ss_pred HHHHhhHhcCCcEEEEcCCCchhHHHh
Q 028267 164 RQAIPVLLSDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 164 ~~aip~il~G~dvi~~A~TGsGKTlaf 190 (211)
...+-.++.|.-+.+.+++|+|||...
T Consensus 156 i~~L~~~l~G~i~~l~G~sG~GKSTLl 182 (302)
T 2yv5_A 156 IDELVDYLEGFICILAGPSGVGKSSIL 182 (302)
T ss_dssp HHHHHHHTTTCEEEEECSTTSSHHHHH
T ss_pred HHHHHhhccCcEEEEECCCCCCHHHHH
Confidence 344456678888999999999999743
No 345
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=30.65 E-value=20 Score=29.75 Aligned_cols=15 Identities=27% Similarity=0.162 Sum_probs=13.0
Q ss_pred cEEEEcCCCchhHHH
Q 028267 175 ECFACAPTGSGKTLA 189 (211)
Q Consensus 175 dvi~~A~TGsGKTla 189 (211)
-|+++++.|||||..
T Consensus 77 iI~I~G~~GSGKSTv 91 (281)
T 2f6r_A 77 VLGLTGISGSGKSSV 91 (281)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 488899999999864
No 346
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=30.63 E-value=31 Score=36.63 Aligned_cols=28 Identities=21% Similarity=0.213 Sum_probs=21.1
Q ss_pred cCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 172 SDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
.|.-+++.+++|+|||. |++-+...+..
T Consensus 731 ~G~lVlI~G~PG~GKTt-Lal~lA~~aa~ 758 (1706)
T 3cmw_A 731 MGRIVEIYGPESSGKTT-LTLQVIAAAQR 758 (1706)
T ss_dssp TTSEEEEECSTTSSHHH-HHHHHHHHHHH
T ss_pred CCceEEEECCCCCCcHH-HHHHHHHHHHH
Confidence 45779999999999997 45566665554
No 347
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=30.62 E-value=38 Score=30.46 Aligned_cols=18 Identities=28% Similarity=0.178 Sum_probs=14.6
Q ss_pred CCcEEEEcCCCchhHHHh
Q 028267 173 DRECFACAPTGSGKTLAF 190 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf 190 (211)
+.-+++++++|+|||...
T Consensus 97 ~~vI~lvG~~GsGKTTt~ 114 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTA 114 (433)
T ss_dssp SEEEEECCCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345888999999999764
No 348
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=30.61 E-value=65 Score=27.76 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=17.4
Q ss_pred Hhc-CC--cEEEEcCCCchhHHHhHHHH
Q 028267 170 LLS-DR--ECFACAPTGSGKTLAFLCPM 194 (211)
Q Consensus 170 il~-G~--dvi~~A~TGsGKTlaf~lPi 194 (211)
+|. |. .|++.++||+|||.--++-+
T Consensus 87 cLd~GyNvcIfSyGQTGsGKT~ral~q~ 114 (298)
T 2o0a_A 87 CLNQKKNFNLISLSTTPHGSLRESLIKF 114 (298)
T ss_dssp HHHTTCCEEEEEECSSCCHHHHHHHHHH
T ss_pred HHhCCCceEEEEECCCCCCccHHHHHHH
Confidence 344 76 47889999999995444333
No 349
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=30.59 E-value=22 Score=31.06 Aligned_cols=16 Identities=25% Similarity=0.198 Sum_probs=13.5
Q ss_pred cEEEEcCCCchhHHHh
Q 028267 175 ECFACAPTGSGKTLAF 190 (211)
Q Consensus 175 dvi~~A~TGsGKTlaf 190 (211)
=+++++++|+|||..+
T Consensus 28 ~~~i~G~nG~GKttll 43 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLL 43 (359)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCChhHHH
Confidence 4678999999999864
No 350
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=30.42 E-value=24 Score=30.70 Aligned_cols=28 Identities=32% Similarity=0.409 Sum_probs=20.6
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
-.|.-+.+.+|+|||||.. |=+|..+..
T Consensus 24 ~~Ge~~~llGpnGsGKSTL--Lr~iaGl~~ 51 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLF--LELIAGFHV 51 (348)
T ss_dssp CTTCEEEEECCCTHHHHHH--HHHHHTSSC
T ss_pred cCCCEEEEECCCCccHHHH--HHHHHcCCC
Confidence 4577788999999999984 455655543
No 351
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=30.24 E-value=23 Score=31.10 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=19.7
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
-.|.=+.+.+|+|||||.. +-+|..|.
T Consensus 28 ~~Ge~~~llGpsGsGKSTL--Lr~iaGl~ 54 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTL--LRCLAGFE 54 (359)
T ss_dssp CTTCEEEEEESTTSSHHHH--HHHHHTSS
T ss_pred cCCCEEEEECCCCchHHHH--HHHHhcCC
Confidence 3567788899999999983 45555554
No 352
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=30.16 E-value=25 Score=26.33 Aligned_cols=16 Identities=25% Similarity=0.339 Sum_probs=13.7
Q ss_pred cEEEEcCCCchhHHHh
Q 028267 175 ECFACAPTGSGKTLAF 190 (211)
Q Consensus 175 dvi~~A~TGsGKTlaf 190 (211)
.|++++.+|+|||..+
T Consensus 27 ki~v~G~~~~GKSsLi 42 (193)
T 2oil_A 27 KVVLIGESGVGKTNLL 42 (193)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 5899999999999743
No 353
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=29.69 E-value=25 Score=30.92 Aligned_cols=18 Identities=28% Similarity=0.340 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCchhHHHh
Q 028267 173 DRECFACAPTGSGKTLAF 190 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf 190 (211)
|.-+++++++|+|||..+
T Consensus 26 ~~~~~i~G~nG~GKstll 43 (430)
T 1w1w_A 26 SNFTSIIGPNGSGKSNMM 43 (430)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 556788999999999853
No 354
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=29.20 E-value=14 Score=31.91 Aligned_cols=18 Identities=28% Similarity=0.493 Sum_probs=14.8
Q ss_pred cCCcEEEEcCCCchhHHHh
Q 028267 172 SDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf 190 (211)
.| =+++++++|+|||..+
T Consensus 60 ~G-~~~lvG~NGaGKStLl 77 (415)
T 4aby_A 60 GG-FCAFTGETGAGKSIIV 77 (415)
T ss_dssp SS-EEEEEESHHHHHHHHT
T ss_pred CC-cEEEECCCCCCHHHHH
Confidence 46 5778999999999954
No 355
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=29.17 E-value=61 Score=29.99 Aligned_cols=48 Identities=19% Similarity=0.209 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHHcCCCCCc----H----HHHHHHh-hHhcCCcEEEEcCCCchhHHH
Q 028267 142 GCESYLLRNLAELGYKEPT----P----IQRQAIP-VLLSDRECFACAPTGSGKTLA 189 (211)
Q Consensus 142 ~l~~~ll~~l~~~g~~~pt----~----iQ~~aip-~il~G~dvi~~A~TGsGKTla 189 (211)
+|+-.-++.+-..|-..|. + +.....+ .+..|.-+++++++|||||..
T Consensus 329 ~isgt~ir~~Lr~G~~~p~~f~~peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTL 385 (552)
T 3cr8_A 329 TLSGEEFQRRMRAGLKIPEWYSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTL 385 (552)
T ss_dssp CCCHHHHHHHHTTTCCCCTTTSCHHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHH
T ss_pred cCCHHHHHHHHhcCCCCCccccccchhhhhhhhcccccccceEEEEECCCCChHHHH
Confidence 5666556666566644331 1 2222222 345788899999999999863
No 356
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=29.02 E-value=26 Score=30.61 Aligned_cols=27 Identities=26% Similarity=0.268 Sum_probs=20.0
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
-.|.=+.+.+|+|||||.. +-+|..|.
T Consensus 27 ~~Ge~~~llGpnGsGKSTL--Lr~iaGl~ 53 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTT--LLMLAGIY 53 (359)
T ss_dssp CTTCEEEEECSTTSSHHHH--HHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHH--HHHHHCCC
Confidence 3577788899999999984 45555554
No 357
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=28.73 E-value=27 Score=30.62 Aligned_cols=27 Identities=19% Similarity=0.164 Sum_probs=19.8
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
-.|.-+.+.+|+|||||.. |=+|..+.
T Consensus 27 ~~Ge~~~llGpnGsGKSTL--Lr~iaGl~ 53 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTL--LYTIAGIY 53 (362)
T ss_dssp CTTCEEEEECCTTSSHHHH--HHHHHTSS
T ss_pred CCCCEEEEECCCCchHHHH--HHHHhcCC
Confidence 3577788899999999984 44555544
No 358
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=28.71 E-value=24 Score=35.59 Aligned_cols=46 Identities=11% Similarity=0.214 Sum_probs=28.3
Q ss_pred HHHHHHHHHcCCC----CCcHHHHHHHhhHhc-C--CcEEEEcCCCchhHHHh
Q 028267 145 SYLLRNLAELGYK----EPTPIQRQAIPVLLS-D--RECFACAPTGSGKTLAF 190 (211)
Q Consensus 145 ~~ll~~l~~~g~~----~pt~iQ~~aip~il~-G--~dvi~~A~TGsGKTlaf 190 (211)
+.++......... |++.|=..|+-.++. + ..||+.+.+|+|||-+-
T Consensus 121 ~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~ 173 (1080)
T 2dfs_A 121 EDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSA 173 (1080)
T ss_dssp HHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCccchH
Confidence 4455544333322 233455566665553 3 45999999999999883
No 359
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=28.54 E-value=27 Score=30.56 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=20.0
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
-.|.=+.+.+|+|||||.. |=+|..|.
T Consensus 39 ~~Ge~~~llGpnGsGKSTL--Lr~iaGl~ 65 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTI--LRLIAGLE 65 (355)
T ss_dssp ETTCEEEEECSTTSSHHHH--HHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHH--HHHHhCCC
Confidence 3577788999999999984 44555544
No 360
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=28.51 E-value=20 Score=33.22 Aligned_cols=19 Identities=26% Similarity=0.274 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCchhHHHh
Q 028267 172 SDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf 190 (211)
.|.-+.+++++|||||...
T Consensus 368 ~Ge~~~ivG~sGsGKSTll 386 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLM 386 (587)
T ss_dssp TTCEEEEECSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677889999999999843
No 361
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=28.46 E-value=45 Score=36.09 Aligned_cols=29 Identities=28% Similarity=0.161 Sum_probs=21.4
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
+-.|+.+++++++|||||...+.=+.+-+
T Consensus 1078 i~~g~~vll~G~~GtGKT~la~~~~~ea~ 1106 (2050)
T 3cmu_A 1078 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ 1106 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34678999999999999986544444444
No 362
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=28.46 E-value=24 Score=30.77 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=19.9
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
-.|.=+.+.+|+|||||.. |-+|..|.
T Consensus 29 ~~Ge~~~llGpnGsGKSTL--Lr~iaGl~ 55 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTF--MRIIAGLD 55 (353)
T ss_dssp CTTCEEEEECSCHHHHHHH--HHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHH--HHHHhCCC
Confidence 3577788899999999984 44555554
No 363
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=28.24 E-value=24 Score=35.64 Aligned_cols=56 Identities=14% Similarity=0.138 Sum_probs=33.3
Q ss_pred CHHHHHHHHHcCCC----CCcHHHHHHHhhHhc-C--CcEEEEcCCCchhHHH--hHHHHHHHHh
Q 028267 144 ESYLLRNLAELGYK----EPTPIQRQAIPVLLS-D--RECFACAPTGSGKTLA--FLCPMLMKLR 199 (211)
Q Consensus 144 ~~~ll~~l~~~g~~----~pt~iQ~~aip~il~-G--~dvi~~A~TGsGKTla--f~lPil~~l~ 199 (211)
.+.++......... |++.|=..|+-.++. + ..||+.+.+|+|||-+ +++.-|..+.
T Consensus 133 ~~~~~~~y~~~~~~~~~PHi~aia~~ay~~m~~~~~~Q~i~isGeSGaGKTe~~k~~~~yla~~~ 197 (1184)
T 1i84_S 133 SEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAVVA 197 (1184)
T ss_dssp SHHHHHHHSSCCSSSSCCCHHHHHHHHHHHHHHHTCCEEEECCCSTTSSTTHHHHHHHHHHHHHS
T ss_pred CHHHHHHhcCcccccCCccHhhhHHHHHHHHHhcCCCcEEEEecCCCCCccHHHHHHHHHHHHHh
Confidence 34555554433332 233465666665553 3 3599999999999988 4444444443
No 364
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=28.14 E-value=25 Score=28.17 Aligned_cols=20 Identities=30% Similarity=0.278 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCchhHHHhH
Q 028267 172 SDRECFACAPTGSGKTLAFL 191 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf~ 191 (211)
....|++.+.+|+|||...-
T Consensus 21 ~~~~I~lvG~~g~GKStl~n 40 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGN 40 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHH
Confidence 34569999999999998654
No 365
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=27.94 E-value=28 Score=30.58 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=20.1
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
-.|.-+.+.+|+|||||.. |=+|..|.
T Consensus 27 ~~Ge~~~llGpnGsGKSTL--Lr~iaGl~ 53 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTT--LRMIAGLE 53 (372)
T ss_dssp ETTCEEEEECSTTSSHHHH--HHHHHTSS
T ss_pred cCCCEEEEECCCCcHHHHH--HHHHHcCC
Confidence 3577788999999999984 44555554
No 366
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=27.85 E-value=22 Score=30.67 Aligned_cols=20 Identities=25% Similarity=0.101 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCchhHHHhH
Q 028267 172 SDRECFACAPTGSGKTLAFL 191 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf~ 191 (211)
.|.=+.+++++|||||....
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~ 149 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAH 149 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34568899999999997543
No 367
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=27.79 E-value=28 Score=26.88 Aligned_cols=24 Identities=29% Similarity=0.282 Sum_probs=17.1
Q ss_pred CcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 174 RECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
.-+++++..|+|||.. +.-++..+
T Consensus 39 ~~i~ivG~~gvGKTtl-~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLL-IEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHH-HHHHHHHH
T ss_pred eEEEEEcCCCCCHHHH-HHHHHHHh
Confidence 4588899999999963 34455443
No 368
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=27.56 E-value=29 Score=30.75 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=20.7
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
-.|.=+.+.+|+|||||. ++-+|..|..
T Consensus 27 ~~Ge~~~llGpsGsGKST--LLr~iaGl~~ 54 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKST--LLRMIAGLET 54 (381)
T ss_dssp CTTCEEEEECCTTSSHHH--HHHHHHTSSC
T ss_pred CCCCEEEEEcCCCchHHH--HHHHHHcCCC
Confidence 357778889999999998 4456655543
No 369
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=27.21 E-value=29 Score=30.47 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=19.8
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
-.|.=+.+.+|+|||||.. |=+|..|.
T Consensus 35 ~~Ge~~~llGpnGsGKSTL--Lr~iaGl~ 61 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTT--LRMIAGLE 61 (372)
T ss_dssp CTTCEEEEECCTTSSHHHH--HHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHH--HHHHHcCC
Confidence 3567788999999999984 44555544
No 370
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=26.99 E-value=25 Score=28.69 Aligned_cols=20 Identities=15% Similarity=0.303 Sum_probs=13.6
Q ss_pred EEcCCCchhHHHhHHHHHHHHh
Q 028267 178 ACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 178 ~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+.+|+|||||..+ -+|..+.
T Consensus 32 i~GpnGsGKSTll--~~i~g~~ 51 (227)
T 1qhl_A 32 LSGGNGAGKSTTM--AAFVTAL 51 (227)
T ss_dssp HHSCCSHHHHHHH--HHHHHHH
T ss_pred EECCCCCCHHHHH--HHHhccc
Confidence 4699999999843 4444443
No 371
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=26.87 E-value=27 Score=32.13 Aligned_cols=27 Identities=15% Similarity=0.321 Sum_probs=19.9
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
-.|.-+.+++++|||||.. +-+|..+.
T Consensus 367 ~~G~~~~ivG~sGsGKSTL--l~~l~g~~ 393 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTI--ASLITRFY 393 (582)
T ss_dssp CTTCEEEEEECTTSSHHHH--HHHHTTTT
T ss_pred cCCCEEEEECCCCCCHHHH--HHHHhhcc
Confidence 3577788999999999984 34455544
No 372
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=26.73 E-value=31 Score=25.73 Aligned_cols=17 Identities=18% Similarity=0.233 Sum_probs=14.6
Q ss_pred cEEEEcCCCchhHHHhH
Q 028267 175 ECFACAPTGSGKTLAFL 191 (211)
Q Consensus 175 dvi~~A~TGsGKTlaf~ 191 (211)
.|++++.+|+|||..+-
T Consensus 24 ki~vvG~~~~GKSsli~ 40 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLF 40 (189)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999998654
No 373
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=26.34 E-value=33 Score=30.99 Aligned_cols=20 Identities=15% Similarity=0.139 Sum_probs=17.0
Q ss_pred hcCCcEEEEcCCCchhHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf 190 (211)
..|.-+.+.+++|||||...
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLl 155 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLS 155 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 47888999999999999843
No 374
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=26.31 E-value=40 Score=28.18 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=18.6
Q ss_pred HHhhHhcCCcEEEEcCCCchhHH
Q 028267 166 AIPVLLSDRECFACAPTGSGKTL 188 (211)
Q Consensus 166 aip~il~G~dvi~~A~TGsGKTl 188 (211)
.+-.++.|.-+.+.+++|+|||.
T Consensus 162 ~lf~~l~geiv~l~G~sG~GKST 184 (301)
T 1u0l_A 162 ELKEYLKGKISTMAGLSGVGKSS 184 (301)
T ss_dssp HHHHHHSSSEEEEECSTTSSHHH
T ss_pred HHHHHhcCCeEEEECCCCCcHHH
Confidence 34456678888999999999986
No 375
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=26.25 E-value=32 Score=25.75 Aligned_cols=20 Identities=25% Similarity=0.037 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCchhHHHhH
Q 028267 172 SDRECFACAPTGSGKTLAFL 191 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf~ 191 (211)
....|++++.+|+|||..+-
T Consensus 21 ~~~ki~v~G~~~~GKSsli~ 40 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVN 40 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHH
Confidence 34569999999999998654
No 376
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=26.20 E-value=32 Score=29.38 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=14.2
Q ss_pred CCcEEEEcCCCchhHHHh
Q 028267 173 DRECFACAPTGSGKTLAF 190 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf 190 (211)
++=+++++++|+|||...
T Consensus 105 ~~vI~ivG~~G~GKTT~~ 122 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSL 122 (320)
T ss_dssp CEEEEEESSTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 455778899999999754
No 377
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=26.13 E-value=25 Score=28.66 Aligned_cols=20 Identities=20% Similarity=0.127 Sum_probs=13.7
Q ss_pred HhcCCcEEEEcCCCchhHHH
Q 028267 170 LLSDRECFACAPTGSGKTLA 189 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTla 189 (211)
+..|.=|++.++.|||||..
T Consensus 22 m~~g~~I~~eG~~GsGKsT~ 41 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTH 41 (227)
T ss_dssp -CCCCEEEEECCC---CHHH
T ss_pred ccCCeEEEEECCCCCCHHHH
Confidence 35788899999999999875
No 378
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=25.85 E-value=33 Score=25.85 Aligned_cols=16 Identities=19% Similarity=0.179 Sum_probs=13.9
Q ss_pred CcEEEEcCCCchhHHH
Q 028267 174 RECFACAPTGSGKTLA 189 (211)
Q Consensus 174 ~dvi~~A~TGsGKTla 189 (211)
..|++++.+|+|||..
T Consensus 29 ~ki~v~G~~~vGKSsl 44 (196)
T 2atv_A 29 VKLAIFGRAGVGKSAL 44 (196)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4699999999999963
No 379
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=25.85 E-value=33 Score=25.71 Aligned_cols=24 Identities=13% Similarity=0.066 Sum_probs=17.4
Q ss_pred cCCcEEEEcCCCchhHHHhHHHHHH
Q 028267 172 SDRECFACAPTGSGKTLAFLCPMLM 196 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf~lPil~ 196 (211)
....|++++.+|+|||..+ --++.
T Consensus 22 ~~~ki~~vG~~~~GKSsl~-~~l~~ 45 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLL-LAFSK 45 (194)
T ss_dssp EEEEEEEECSTTSSHHHHH-HHHHH
T ss_pred eeeEEEEECcCCCCHHHHH-HHHhc
Confidence 3456999999999999644 44444
No 380
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=25.82 E-value=31 Score=26.10 Aligned_cols=17 Identities=18% Similarity=0.167 Sum_probs=14.5
Q ss_pred CcEEEEcCCCchhHHHh
Q 028267 174 RECFACAPTGSGKTLAF 190 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf 190 (211)
..|++.+++|+|||..+
T Consensus 24 ~ki~~vG~~~vGKSsli 40 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLL 40 (190)
T ss_dssp CEEEEEESTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46899999999999754
No 381
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=25.78 E-value=33 Score=25.95 Aligned_cols=16 Identities=13% Similarity=0.096 Sum_probs=14.0
Q ss_pred CcEEEEcCCCchhHHH
Q 028267 174 RECFACAPTGSGKTLA 189 (211)
Q Consensus 174 ~dvi~~A~TGsGKTla 189 (211)
..|++++.+|+|||..
T Consensus 29 ~ki~v~G~~~~GKSsl 44 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSF 44 (199)
T ss_dssp EEEEEESSTTSSHHHH
T ss_pred eEEEEECcCCCCHHHH
Confidence 4699999999999973
No 382
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=25.73 E-value=26 Score=26.93 Aligned_cols=17 Identities=24% Similarity=0.264 Sum_probs=14.3
Q ss_pred CCcEEEEcCCCchhHHH
Q 028267 173 DRECFACAPTGSGKTLA 189 (211)
Q Consensus 173 G~dvi~~A~TGsGKTla 189 (211)
...|++.+.+|+|||..
T Consensus 29 ~~~i~v~G~~~~GKSsl 45 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTA 45 (223)
T ss_dssp SCEEEEEESCHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHH
Confidence 35699999999999963
No 383
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=25.62 E-value=41 Score=29.48 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=18.6
Q ss_pred HhhHhcCCcEEEEcCCCchhHH
Q 028267 167 IPVLLSDRECFACAPTGSGKTL 188 (211)
Q Consensus 167 ip~il~G~dvi~~A~TGsGKTl 188 (211)
+...+.|.-+++++++|+|||.
T Consensus 209 L~~~~~G~~~~lvG~sG~GKST 230 (358)
T 2rcn_A 209 LEEALTGRISIFAGQSGVGKSS 230 (358)
T ss_dssp HHHHHTTSEEEEECCTTSSHHH
T ss_pred HHHhcCCCEEEEECCCCccHHH
Confidence 3446789899999999999996
No 384
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=25.60 E-value=31 Score=25.95 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=16.2
Q ss_pred CcEEEEcCCCchhHHHhHHHHHH
Q 028267 174 RECFACAPTGSGKTLAFLCPMLM 196 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf~lPil~ 196 (211)
..|++++.+|+|||..+ --++.
T Consensus 24 ~ki~vvG~~~~GKSsli-~~l~~ 45 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIV-CRFVQ 45 (192)
T ss_dssp EEEEEEECTTSSHHHHH-HHHHH
T ss_pred eEEEEECcCCCCHHHHH-HHHhc
Confidence 46999999999999743 34443
No 385
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=25.58 E-value=33 Score=26.13 Aligned_cols=17 Identities=18% Similarity=0.237 Sum_probs=14.4
Q ss_pred CcEEEEcCCCchhHHHh
Q 028267 174 RECFACAPTGSGKTLAF 190 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf 190 (211)
.-|++++.+|+|||.-+
T Consensus 24 ~ki~vvG~~~vGKSsLi 40 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLA 40 (195)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 35999999999999754
No 386
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=25.46 E-value=33 Score=26.76 Aligned_cols=24 Identities=13% Similarity=0.260 Sum_probs=16.9
Q ss_pred HHhhHh-cCCcEEEEcCCCchhHHH
Q 028267 166 AIPVLL-SDRECFACAPTGSGKTLA 189 (211)
Q Consensus 166 aip~il-~G~dvi~~A~TGsGKTla 189 (211)
.+|.+- ....|++++.+|+|||..
T Consensus 21 ~~P~~~~~~~kI~vvG~~~vGKSsL 45 (228)
T 2qu8_A 21 GLPSINPHKKTIILSGAPNVGKSSF 45 (228)
T ss_dssp -CCSCCTTSEEEEEECSTTSSHHHH
T ss_pred cCCCCCCCCCEEEEECCCCCCHHHH
Confidence 345542 345799999999999963
No 387
>1jmt_B Splicing factor U2AF 65 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens}
Probab=25.42 E-value=36 Score=18.99 Aligned_cols=14 Identities=36% Similarity=0.674 Sum_probs=11.5
Q ss_pred cCCCCCcHHHHHHH
Q 028267 154 LGYKEPTPIQRQAI 167 (211)
Q Consensus 154 ~g~~~pt~iQ~~ai 167 (211)
-||++.||.|..+.
T Consensus 13 ~GyE~vtp~qykam 26 (28)
T 1jmt_B 13 PGFEHITPMQYKAM 26 (28)
T ss_dssp TTCTTSCHHHHHHT
T ss_pred CCccccCHHHHhhc
Confidence 48999999997764
No 388
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=25.36 E-value=40 Score=30.30 Aligned_cols=28 Identities=18% Similarity=0.055 Sum_probs=18.9
Q ss_pred HHHHHHhhHhcCCc--EEEEcCCCchhHHHh
Q 028267 162 IQRQAIPVLLSDRE--CFACAPTGSGKTLAF 190 (211)
Q Consensus 162 iQ~~aip~il~G~d--vi~~A~TGsGKTlaf 190 (211)
+|-..+ .+-.|.- +.+++++|+|||..+
T Consensus 30 L~~vsl-~i~~Gei~~vaLvG~nGaGKSTLl 59 (427)
T 2qag_B 30 DQLVNK-SVSQGFCFNILCVGETGLGKSTLM 59 (427)
T ss_dssp HHHHHH-SCC-CCEEEEEEECSTTSSSHHHH
T ss_pred cCCCce-EecCCCeeEEEEECCCCCCHHHHH
Confidence 444333 3456766 889999999999743
No 389
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=25.36 E-value=28 Score=32.27 Aligned_cols=26 Identities=35% Similarity=0.544 Sum_probs=19.2
Q ss_pred cCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 172 SDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
.|.-+.+++++|||||.. +-+|..+.
T Consensus 380 ~G~~~~ivG~sGsGKSTl--l~~l~g~~ 405 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTI--VNLLMRFY 405 (598)
T ss_dssp TTCEEEEECCTTSSTTHH--HHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHH--HHHHhcCc
Confidence 567788999999999984 34454443
No 390
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=25.31 E-value=26 Score=28.38 Aligned_cols=18 Identities=11% Similarity=0.012 Sum_probs=15.1
Q ss_pred cCCcEEEEcCCCchhHHH
Q 028267 172 SDRECFACAPTGSGKTLA 189 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTla 189 (211)
.+.-|++.+..|||||..
T Consensus 23 ~~~~I~ieG~~GsGKST~ 40 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTF 40 (263)
T ss_dssp CCEEEEEECSTTSSHHHH
T ss_pred CceEEEEECCCCCCHHHH
Confidence 456789999999999964
No 391
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=25.31 E-value=55 Score=28.39 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=18.9
Q ss_pred cCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 172 SDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
....+++++.+|+||++.+ -.|+.+.
T Consensus 159 ~~~~vli~Ge~GtGK~~lA--r~ih~~s 184 (387)
T 1ny5_A 159 AECPVLITGESGVGKEVVA--RLIHKLS 184 (387)
T ss_dssp CCSCEEEECSTTSSHHHHH--HHHHHHS
T ss_pred CCCCeEEecCCCcCHHHHH--HHHHHhc
Confidence 4567999999999999854 3444443
No 392
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=25.26 E-value=34 Score=25.75 Aligned_cols=17 Identities=24% Similarity=0.306 Sum_probs=14.3
Q ss_pred CcEEEEcCCCchhHHHh
Q 028267 174 RECFACAPTGSGKTLAF 190 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf 190 (211)
..|++++.+|+|||..+
T Consensus 27 ~ki~vvG~~~~GKSsLi 43 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLM 43 (192)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35999999999999753
No 393
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=24.71 E-value=1.3e+02 Score=27.29 Aligned_cols=42 Identities=17% Similarity=0.181 Sum_probs=27.6
Q ss_pred CcHHHHHHHhhH---hcCCcEEEEcCCCchhHHHhHHHHHHHHhcc
Q 028267 159 PTPIQRQAIPVL---LSDRECFACAPTGSGKTLAFLCPMLMKLRVL 201 (211)
Q Consensus 159 pt~iQ~~aip~i---l~G~dvi~~A~TGsGKTlaf~lPil~~l~~~ 201 (211)
|...-..+|..+ -.|.-+++.|+.|+|||... --|+..+...
T Consensus 158 ~~~tGiraID~l~PigrGQR~lIfg~~g~GKT~Ll-~~Ia~~i~~~ 202 (427)
T 3l0o_A 158 PKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTIL-KEIANGIAEN 202 (427)
T ss_dssp TTCHHHHHHHHHSCCBTTCEEEEEECTTCCHHHHH-HHHHHHHHHH
T ss_pred chhccchhhhhcccccCCceEEEecCCCCChhHHH-HHHHHHHhhc
Confidence 334444555543 46888899999999999855 3355555443
No 394
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=24.62 E-value=33 Score=25.66 Aligned_cols=22 Identities=14% Similarity=0.072 Sum_probs=16.2
Q ss_pred cEEEEcCCCchhHHHhHHHHHHH
Q 028267 175 ECFACAPTGSGKTLAFLCPMLMK 197 (211)
Q Consensus 175 dvi~~A~TGsGKTlaf~lPil~~ 197 (211)
.|++++.+|+|||..+ --++..
T Consensus 25 ki~v~G~~~~GKSsli-~~l~~~ 46 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFL-FRYADD 46 (191)
T ss_dssp EEEEEESTTSSHHHHH-HHHHHH
T ss_pred EEEEECCCCcCHHHHH-HHHhcC
Confidence 4899999999999643 344443
No 395
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=24.55 E-value=33 Score=26.07 Aligned_cols=17 Identities=18% Similarity=0.362 Sum_probs=14.4
Q ss_pred CcEEEEcCCCchhHHHh
Q 028267 174 RECFACAPTGSGKTLAF 190 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf 190 (211)
..|++++.+|+|||..+
T Consensus 26 ~ki~v~G~~~~GKSsLi 42 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLL 42 (200)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECcCCCCHHHHH
Confidence 36999999999999754
No 396
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=24.55 E-value=33 Score=25.93 Aligned_cols=17 Identities=18% Similarity=0.216 Sum_probs=14.4
Q ss_pred CcEEEEcCCCchhHHHh
Q 028267 174 RECFACAPTGSGKTLAF 190 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf 190 (211)
..|++++.+|+|||..+
T Consensus 30 ~ki~v~G~~~vGKSsLi 46 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTIL 46 (192)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46999999999999743
No 397
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=24.54 E-value=32 Score=29.09 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=17.8
Q ss_pred CcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 174 RECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+-++..++.|+|||... .-+...|.
T Consensus 25 ~a~L~~G~~G~GKt~~a-~~la~~l~ 49 (334)
T 1a5t_A 25 HALLIQALPGMGDDALI-YALSRYLL 49 (334)
T ss_dssp SEEEEECCTTSCHHHHH-HHHHHHHT
T ss_pred eeEEEECCCCchHHHHH-HHHHHHHh
Confidence 44899999999999753 34445554
No 398
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=24.40 E-value=36 Score=29.98 Aligned_cols=28 Identities=14% Similarity=0.083 Sum_probs=20.6
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
-.|.=+.+.+++|||||.. +-+|..|..
T Consensus 52 ~~Gei~~IiGpnGaGKSTL--lr~i~GL~~ 79 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTL--IRCVNLLER 79 (366)
T ss_dssp CTTCEEEEECCTTSSHHHH--HHHHHTSSC
T ss_pred cCCCEEEEEcCCCchHHHH--HHHHhcCCC
Confidence 4577788999999999973 455655543
No 399
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=24.38 E-value=23 Score=27.13 Aligned_cols=17 Identities=18% Similarity=0.266 Sum_probs=14.4
Q ss_pred CcEEEEcCCCchhHHHh
Q 028267 174 RECFACAPTGSGKTLAF 190 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf 190 (211)
..|++++.+|+|||..+
T Consensus 26 ~ki~vvG~~~~GKSsli 42 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLL 42 (207)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred cEEEEECcCCCCHHHHH
Confidence 46999999999999743
No 400
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=23.93 E-value=35 Score=25.85 Aligned_cols=18 Identities=22% Similarity=0.075 Sum_probs=14.9
Q ss_pred cCCcEEEEcCCCchhHHH
Q 028267 172 SDRECFACAPTGSGKTLA 189 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTla 189 (211)
....|++++.+|+|||..
T Consensus 23 ~~~ki~vvG~~~~GKSsl 40 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSL 40 (201)
T ss_dssp CEEEEEEEESTTSSHHHH
T ss_pred CcEEEEEECCCCcCHHHH
Confidence 345799999999999964
No 401
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=23.86 E-value=61 Score=27.63 Aligned_cols=20 Identities=15% Similarity=0.046 Sum_probs=15.9
Q ss_pred hcCCcEEEEcCCCchhHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf 190 (211)
-.|.-+.+.+++|+|||..+
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl 72 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTI 72 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 34667889999999999743
No 402
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=23.56 E-value=30 Score=32.00 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=19.8
Q ss_pred hcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 171 LSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
-.|.-+.+++++|||||.. +-+|..+.
T Consensus 368 ~~G~~~~ivG~sGsGKSTL--l~~l~g~~ 394 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTV--LSLLLRLY 394 (595)
T ss_dssp CTTCEEEEECCTTSSSTHH--HHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHH--HHHHhcCc
Confidence 3577788999999999984 34455544
No 403
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=23.55 E-value=37 Score=30.34 Aligned_cols=17 Identities=29% Similarity=0.278 Sum_probs=14.3
Q ss_pred CcEEEEcCCCchhHHHh
Q 028267 174 RECFACAPTGSGKTLAF 190 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf 190 (211)
+-+++++++|+|||...
T Consensus 100 ~vI~ivG~~GvGKTTla 116 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTA 116 (432)
T ss_dssp CCEEEECCSSSSTTHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999654
No 404
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=23.55 E-value=67 Score=28.08 Aligned_cols=27 Identities=22% Similarity=0.098 Sum_probs=20.3
Q ss_pred cCCcEEEEcCCCchhHHHhHHHHHHHHhc
Q 028267 172 SDRECFACAPTGSGKTLAFLCPMLMKLRV 200 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTlaf~lPil~~l~~ 200 (211)
.| =+++.+++|+|||. +++.++..++.
T Consensus 28 ~G-iteI~G~pGsGKTt-L~Lq~~~~~~~ 54 (333)
T 3io5_A 28 SG-LLILAGPSKSFKSN-FGLTMVSSYMR 54 (333)
T ss_dssp SE-EEEEEESSSSSHHH-HHHHHHHHHHH
T ss_pred CC-eEEEECCCCCCHHH-HHHHHHHHHHh
Confidence 35 38899999999996 55666666654
No 405
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=23.48 E-value=35 Score=26.28 Aligned_cols=17 Identities=24% Similarity=0.286 Sum_probs=14.5
Q ss_pred CcEEEEcCCCchhHHHh
Q 028267 174 RECFACAPTGSGKTLAF 190 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf 190 (211)
..|++++.+|+|||..+
T Consensus 35 ~ki~vvG~~~vGKSsli 51 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLL 51 (214)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred EEEEEECcCCCCHHHHH
Confidence 46999999999999753
No 406
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=23.31 E-value=36 Score=26.25 Aligned_cols=16 Identities=19% Similarity=0.177 Sum_probs=13.7
Q ss_pred CcEEEEcCCCchhHHH
Q 028267 174 RECFACAPTGSGKTLA 189 (211)
Q Consensus 174 ~dvi~~A~TGsGKTla 189 (211)
..|++++.+|+|||..
T Consensus 29 ~ki~vvG~~~vGKSsL 44 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTAL 44 (205)
T ss_dssp EEEEEEESTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3599999999999963
No 407
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=23.29 E-value=33 Score=28.04 Aligned_cols=18 Identities=22% Similarity=0.239 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCchhHHH
Q 028267 172 SDRECFACAPTGSGKTLA 189 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTla 189 (211)
.|.=|++.++.|||||..
T Consensus 26 ~~~~i~~eG~~GsGKsT~ 43 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTA 43 (236)
T ss_dssp CCCEEEEEESTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 577899999999999974
No 408
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=22.58 E-value=33 Score=26.17 Aligned_cols=17 Identities=18% Similarity=0.129 Sum_probs=14.5
Q ss_pred CcEEEEcCCCchhHHHh
Q 028267 174 RECFACAPTGSGKTLAF 190 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf 190 (211)
..|++++++|+|||..+
T Consensus 26 ~ki~lvG~~~vGKSsLi 42 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLL 42 (198)
T ss_dssp EEEEEEEETTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 45899999999999854
No 409
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=22.41 E-value=34 Score=25.47 Aligned_cols=16 Identities=19% Similarity=0.237 Sum_probs=13.9
Q ss_pred cEEEEcCCCchhHHHh
Q 028267 175 ECFACAPTGSGKTLAF 190 (211)
Q Consensus 175 dvi~~A~TGsGKTlaf 190 (211)
.|++++.+|+|||...
T Consensus 24 ~i~v~G~~~~GKssli 39 (189)
T 2x77_A 24 RVLMLGLDNAGKTSIL 39 (189)
T ss_dssp EEEEEEETTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5999999999999753
No 410
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=22.36 E-value=32 Score=32.27 Aligned_cols=28 Identities=18% Similarity=0.139 Sum_probs=20.4
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+..|.-+.+.+++|+|||..+ -+|..+.
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLL--kiL~Gll 127 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTAL--KILAGKQ 127 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHH--HHHHTSS
T ss_pred CCCCCEEEEECCCCChHHHHH--HHHhcCC
Confidence 346888889999999999854 4444443
No 411
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=22.20 E-value=39 Score=26.00 Aligned_cols=17 Identities=24% Similarity=0.202 Sum_probs=14.4
Q ss_pred CcEEEEcCCCchhHHHh
Q 028267 174 RECFACAPTGSGKTLAF 190 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf 190 (211)
..|++++.+|+|||..+
T Consensus 27 ~ki~lvG~~~vGKSsLi 43 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLV 43 (201)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECcCCCCHHHHH
Confidence 35899999999999754
No 412
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=22.14 E-value=26 Score=30.00 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=17.7
Q ss_pred hHhcCCcEEEEcCCCchhHHH
Q 028267 169 VLLSDRECFACAPTGSGKTLA 189 (211)
Q Consensus 169 ~il~G~dvi~~A~TGsGKTla 189 (211)
.++.|.-+.+.+++|+|||..
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTL 189 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSL 189 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHH
T ss_pred hhcCCCEEEEECCCCCCHHHH
Confidence 456788999999999999963
No 413
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=21.57 E-value=41 Score=25.47 Aligned_cols=17 Identities=18% Similarity=0.249 Sum_probs=14.3
Q ss_pred CcEEEEcCCCchhHHHh
Q 028267 174 RECFACAPTGSGKTLAF 190 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf 190 (211)
..|++++.+|+|||..+
T Consensus 26 ~ki~vvG~~~~GKSsli 42 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLL 42 (201)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36999999999999743
No 414
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=21.47 E-value=44 Score=25.47 Aligned_cols=17 Identities=29% Similarity=0.350 Sum_probs=14.1
Q ss_pred CcEEEEcCCCchhHHHh
Q 028267 174 RECFACAPTGSGKTLAF 190 (211)
Q Consensus 174 ~dvi~~A~TGsGKTlaf 190 (211)
..|++++.+|+|||..+
T Consensus 26 ~ki~vvG~~~~GKSsLi 42 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFL 42 (217)
T ss_dssp EEEEEESCTTSSHHHHH
T ss_pred EEEEEECcCCCCHHHHH
Confidence 35899999999999743
No 415
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=21.38 E-value=30 Score=31.90 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=18.8
Q ss_pred HhhHhcCCcEEEEcCCCchhHHHh
Q 028267 167 IPVLLSDRECFACAPTGSGKTLAF 190 (211)
Q Consensus 167 ip~il~G~dvi~~A~TGsGKTlaf 190 (211)
+|..-.|.=+.+++++|+|||..+
T Consensus 19 l~~~~~Gei~gLiGpNGaGKSTLl 42 (538)
T 3ozx_A 19 LPTPKNNTILGVLGKNGVGKTTVL 42 (538)
T ss_dssp CCCCCTTEEEEEECCTTSSHHHHH
T ss_pred CCCCCCCCEEEEECCCCCcHHHHH
Confidence 355566777888999999999854
No 416
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=21.38 E-value=46 Score=27.87 Aligned_cols=18 Identities=33% Similarity=0.392 Sum_probs=14.3
Q ss_pred cCCcEEEEcCCCchhHHH
Q 028267 172 SDRECFACAPTGSGKTLA 189 (211)
Q Consensus 172 ~G~dvi~~A~TGsGKTla 189 (211)
.|+-+.+++++|+|||..
T Consensus 97 ~~~~i~i~g~~G~GKTT~ 114 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTT 114 (295)
T ss_dssp SSEEEEEECCTTTTHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 456677889999999864
No 417
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=21.38 E-value=70 Score=27.62 Aligned_cols=19 Identities=16% Similarity=0.212 Sum_probs=16.4
Q ss_pred hcCCcEEEEcCCCchhHHH
Q 028267 171 LSDRECFACAPTGSGKTLA 189 (211)
Q Consensus 171 l~G~dvi~~A~TGsGKTla 189 (211)
+.++++++++.||+||+..
T Consensus 160 ~~~~~i~~vG~~nvGKStl 178 (369)
T 3ec1_A 160 REGGDVYVVGCTNVGKSTF 178 (369)
T ss_dssp HTTSCEEEECCTTSSHHHH
T ss_pred cccCcEEEEcCCCCchHHH
Confidence 4688999999999999854
No 418
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=21.08 E-value=43 Score=25.57 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=14.1
Q ss_pred CCcEEEEcCCCchhHHH
Q 028267 173 DRECFACAPTGSGKTLA 189 (211)
Q Consensus 173 G~dvi~~A~TGsGKTla 189 (211)
...|++++.+|+|||.-
T Consensus 30 ~~ki~vvG~~~~GKSsL 46 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCL 46 (204)
T ss_dssp CEEEEEEESTTSSHHHH
T ss_pred eEEEEEECcCCCCHHHH
Confidence 34699999999999963
No 419
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=21.00 E-value=43 Score=25.50 Aligned_cols=16 Identities=19% Similarity=0.198 Sum_probs=13.7
Q ss_pred cEEEEcCCCchhHHHh
Q 028267 175 ECFACAPTGSGKTLAF 190 (211)
Q Consensus 175 dvi~~A~TGsGKTlaf 190 (211)
.|++++.+|+|||..+
T Consensus 31 ki~vvG~~~vGKSsli 46 (201)
T 2hup_A 31 KLVLVGDASVGKTCVV 46 (201)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 5899999999999743
No 420
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=20.96 E-value=45 Score=30.61 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=19.5
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHH
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKL 198 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l 198 (211)
+..|.-+.+++++|+|||..+ =+|..+
T Consensus 44 i~~Ge~~~LvG~NGaGKSTLl--k~l~Gl 70 (538)
T 1yqt_A 44 VKEGMVVGIVGPNGTGKSTAV--KILAGQ 70 (538)
T ss_dssp CCTTSEEEEECCTTSSHHHHH--HHHHTS
T ss_pred CCCCCEEEEECCCCCCHHHHH--HHHhCC
Confidence 346777889999999999843 344443
No 421
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=20.55 E-value=40 Score=28.36 Aligned_cols=18 Identities=22% Similarity=0.206 Sum_probs=14.2
Q ss_pred CCcEEEEcCCCchhHHHh
Q 028267 173 DRECFACAPTGSGKTLAF 190 (211)
Q Consensus 173 G~dvi~~A~TGsGKTlaf 190 (211)
+.-+++++++|+|||...
T Consensus 98 ~~vi~i~G~~G~GKTT~~ 115 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTA 115 (297)
T ss_dssp SEEEEEECSSCSSTTHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 445778899999999754
No 422
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=20.10 E-value=59 Score=29.06 Aligned_cols=28 Identities=18% Similarity=0.201 Sum_probs=21.3
Q ss_pred HhcCCcEEEEcCCCchhHHHhHHHHHHHHh
Q 028267 170 LLSDRECFACAPTGSGKTLAFLCPMLMKLR 199 (211)
Q Consensus 170 il~G~dvi~~A~TGsGKTlaf~lPil~~l~ 199 (211)
+-.|.-+.+.+++|+|||.. +-+|..+.
T Consensus 154 i~~Gq~~~IvG~sGsGKSTL--l~~Iag~~ 181 (438)
T 2dpy_A 154 VGRGQRMGLFAGSGVGKSVL--LGMMARYT 181 (438)
T ss_dssp CBTTCEEEEEECTTSSHHHH--HHHHHHHS
T ss_pred ecCCCEEEEECCCCCCHHHH--HHHHhccc
Confidence 34677788999999999985 55666654
Done!