BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028272
(211 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O48962|EBP_ARATH Probable 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase
OS=Arabidopsis thaliana GN=At1g20050 PE=2 SV=1
Length = 223
Score = 204 bits (519), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 86/155 (55%), Positives = 122/155 (78%)
Query: 41 QAKSKIERLLICWWALTGLIHVFQEGYYVFTPDLFNDNSPNFMAEIWKEYSKGDSRYATR 100
+ K+K+++LL+CWW TGL HV EGY+VF+P+ F DN+ ++AE+WKEYSKGDSRY R
Sbjct: 49 RKKAKLDKLLMCWWTFTGLTHVILEGYFVFSPEFFKDNTSAYLAEVWKEYSKGDSRYVGR 108
Query: 101 HTSVLGIESVASIVLGPLSLLAAYAVAKQKSYRYIFQFAISIAQLYGTIQYFLTAFLEGD 160
++V+ +E + ++++GP SLLA YA+AK+KSY Y+ Q AIS+ QLYG + YF+TA LEGD
Sbjct: 109 DSAVVSVEGITAVIVGPASLLAIYAIAKEKSYSYVLQLAISVCQLYGCLVYFITAILEGD 168
Query: 161 NFASSRYYYYSYYVGQSSIWVIVPMLIATRYWIKI 195
NFA++ +YYYSYY+G + WV++P LI+ R W KI
Sbjct: 169 NFATNSFYYYSYYIGANCWWVLIPSLISFRCWKKI 203
>sp|Q9FTZ2|EBP_ORYSJ Probable 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase OS=Oryza
sativa subsp. japonica GN=Os01g0103600 PE=2 SV=1
Length = 219
Score = 187 bits (474), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 83/182 (45%), Positives = 125/182 (68%), Gaps = 4/182 (2%)
Query: 27 LLIIFVTWIISG-MSQAKSKIERLLICWWALTGLIHVFQEGYYVFTPDLFNDNSPNFMAE 85
L ++ W+ISG S+ S +R L+CWWA TGL H+ EG +VF P+ F++ +P++ E
Sbjct: 38 LFLLLAVWLISGRCSRRLSDTDRWLMCWWAFTGLTHIIIEGTFVFAPNFFSNQNPSYFDE 97
Query: 86 IWKEYSKGDSRYATRHTSVLGIESVASIVLGPLSLLAAYAVAKQKSYRYIFQFAISIAQL 145
+WKEYSKGDSRY R + + +E + +++ GP SLLA YA+A KSY +I QF + + QL
Sbjct: 98 VWKEYSKGDSRYVARDPATVTVEGITAVLEGPASLLAVYAIASGKSYSHILQFTVCLGQL 157
Query: 146 YGTIQYFLTAFLEGDNFASSRYYYYSYYVGQSSIWVIVPMLIATRYWIKIHAICKRLQDK 205
YG + YF+TA+L+G NF +S +Y+++Y++G +S WV++P +IA R W K IC Q +
Sbjct: 158 YGCLVYFITAYLDGFNFWTSPFYFWAYFIGANSSWVVIPTMIAIRSWKK---ICAAFQGE 214
Query: 206 KV 207
KV
Sbjct: 215 KV 216
>sp|P70245|EBP_MOUSE 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase OS=Mus musculus
GN=Ebp PE=1 SV=3
Length = 230
Score = 111 bits (277), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 108/187 (57%), Gaps = 8/187 (4%)
Query: 29 IIFVTWIISGMSQAKS--KIERLLICWWALTGLIHVFQEGYY-VFTPDLFNDNSPNFMAE 85
+I +TW++S + RL +CW+A+ IH+ EG++ ++ L D + F+++
Sbjct: 42 LIVITWLLSSRASVVPLGAGRRLALCWFAVCTFIHLVIEGWFSLYNGILLEDQA--FLSQ 99
Query: 86 IWKEYSKGDSRYATRHTSVLGIESVASIVLGPLSLLAAYAVAKQKSYRYIFQFAISIAQL 145
+WKEYSKGDSRY + V+ +E+V + + GPLSL A +Q+ +R++ Q +S+ Q+
Sbjct: 100 LWKEYSKGDSRYILSDSFVVCMETVTACLWGPLSLWVVIAFLRQQPFRFVLQLVVSMGQI 159
Query: 146 YGTIQYFLTAFLEGDNFASSRY--YYYSYYVGQSSIWVIVPMLIATRYWIKIHAICKRLQ 203
YG + YFLT EG + Y++ Y+V +++W+++P ++ IK + +
Sbjct: 160 YGDVLYFLTELHEGLQHGEIGHPVYFWFYFVFLNAVWLVIPSILVLDA-IKHLTSAQSVL 218
Query: 204 DKKVTKV 210
D KV K+
Sbjct: 219 DSKVMKI 225
>sp|Q9JJ46|EBP_RAT 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase OS=Rattus
norvegicus GN=Ebp PE=2 SV=3
Length = 230
Score = 110 bits (276), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 113/208 (54%), Gaps = 11/208 (5%)
Query: 12 NFSTASLHAWNGVSLL-----LIIFVTWIISGMSQAKS--KIERLLICWWALTGLIHVFQ 64
NF L W+ + L ++I +TW++S RL +CW+A+ IH+
Sbjct: 20 NFVPNDLPTWHILVGLFSFSGVLIVITWLLSSRVSVVPLGTGRRLALCWFAVCTFIHLVI 79
Query: 65 EGYYVFTPDLFNDNSPNFMAEIWKEYSKGDSRYATRHTSVLGIESVASIVLGPLSLLAAY 124
EG++ F ++ ++ F++++WKEYSKGDSRY ++ +ESV + + GPLSL
Sbjct: 80 EGWFSFYHEILLEDQ-AFLSQLWKEYSKGDSRYILSDGFIVCMESVTACLWGPLSLWVVI 138
Query: 125 AVAKQKSYRYIFQFAISIAQLYGTIQYFLTAFLEGDNFASSRY--YYYSYYVGQSSIWVI 182
A + + +R++ Q +S+ Q+YG + YFLT +G + Y++ Y+V ++IW++
Sbjct: 139 AFLRHQPFRFVLQLVVSVGQIYGDVLYFLTELRDGFQHGELGHPLYFWFYFVIMNAIWLV 198
Query: 183 VPMLIATRYWIKIHAICKRLQDKKVTKV 210
+P ++ IK + + D KV K+
Sbjct: 199 IPGILVFDA-IKHLTNAQSMLDNKVMKI 225
>sp|Q15125|EBP_HUMAN 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase OS=Homo sapiens
GN=EBP PE=1 SV=3
Length = 230
Score = 109 bits (273), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 96/162 (59%), Gaps = 7/162 (4%)
Query: 28 LIIFVTWIISGMSQ--AKSKIERLLICWWALTGLIHVFQEGYYV-FTPDLFNDNSPNFMA 84
+++ TW++SG + RL +CW+A+ G IH+ EG++V + DL D + F++
Sbjct: 41 VLVVTTWLLSGRAAVVPLGTWRRLSLCWFAVCGFIHLVIEGWFVLYYEDLLGDQA--FLS 98
Query: 85 EIWKEYSKGDSRYATRHTSVLGIESVASIVLGPLSLLAAYAVAKQKSYRYIFQFAISIAQ 144
++WKEY+KGDSRY + +E++ + + GPLSL A +Q R+I Q +S+ Q
Sbjct: 99 QLWKEYAKGDSRYILGDNFTVCMETITACLWGPLSLWVVIAFLRQHPLRFILQLVVSVGQ 158
Query: 145 LYGTIQYFLTAFLEGDNFASSRY--YYYSYYVGQSSIWVIVP 184
+YG + YFLT +G + Y++ Y+V +++W+++P
Sbjct: 159 IYGDVLYFLTEHRDGFQHGELGHPLYFWFYFVFMNALWLVLP 200
>sp|Q60490|EBP_CAVPO 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase OS=Cavia
porcellus GN=EBP PE=1 SV=3
Length = 229
Score = 109 bits (272), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 102/183 (55%), Gaps = 12/183 (6%)
Query: 12 NFSTASLHAWNGVSLLLIIF-----VTWIISGMSQAKS--KIERLLICWWALTGLIHVFQ 64
+F L AW V++L +F W++S + RL +CW+A+ +H+
Sbjct: 21 HFVPNDLSAWYIVTVLFTVFGALVVTMWLLSSRASVVPLGTWRRLSVCWFAVCAFVHLVI 80
Query: 65 EGYYV-FTPDLFNDNSPNFMAEIWKEYSKGDSRYATRHTSVLGIESVASIVLGPLSLLAA 123
EG++V + + D + F++++WKEY+KGDSRY ++ +ES+ ++ GPLSL A
Sbjct: 81 EGWFVLYQKAILGDQA--FLSQLWKEYAKGDSRYIIEDNFIICMESITVVLWGPLSLWAV 138
Query: 124 YAVAKQKSYRYIFQFAISIAQLYGTIQYFLTAFLEGDNFASSRY--YYYSYYVGQSSIWV 181
A +Q RY+ QF IS+ Q+YG + YFLT + +G + Y++ Y+ + +W+
Sbjct: 139 IAFLRQHPSRYVLQFVISLGQIYGDLLYFLTEYRDGFQHGEMGHPIYFWFYFFFMNVLWL 198
Query: 182 IVP 184
++P
Sbjct: 199 VIP 201
>sp|Q9D0P0|EBPL_MOUSE Emopamil-binding protein-like OS=Mus musculus GN=Ebpl PE=2 SV=1
Length = 206
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 87/160 (54%), Gaps = 3/160 (1%)
Query: 39 MSQAKSKIERLLICWWALTGLIHVFQEGYYVFTPDLFN-DNSPNFMAEIWKEYSKGDSRY 97
+ + +S +ER ++ W L+H EG +V+ + N +S +A +WKEY K D+R+
Sbjct: 32 LGRGRSAVERWVLAWLCYDSLVHFVLEGAFVYLSIVGNVADSQGLIASLWKEYGKADTRW 91
Query: 98 ATRHTSVLGIESVASIVLGPLSLLAAYAVAKQKSYRYIFQFAISIAQLYGTIQYFLTAFL 157
+V+ +E + ++ G L+L+ YA+ K+K YR+ Q + + +LYG F +L
Sbjct: 92 LYSDPTVVSLEILTVVLDGLLALVLIYAIVKEKYYRHFVQIVLCVCELYGCWMTFFPEWL 151
Query: 158 EGDNF--ASSRYYYYSYYVGQSSIWVIVPMLIATRYWIKI 195
G SS Y + Y V + +WV++P L+ + W+++
Sbjct: 152 VGSPSLNTSSWLYLWVYLVFFNGLWVLIPGLLLWQSWVEL 191
>sp|Q9BY08|EBPL_HUMAN Emopamil-binding protein-like OS=Homo sapiens GN=EBPL PE=1 SV=1
Length = 206
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 90/175 (51%), Gaps = 7/175 (4%)
Query: 39 MSQAKSKIERLLICWWALTGLIHVFQEGYYVFTPDLFN-DNSPNFMAEIWKEYSKGDSRY 97
+ + + +R + W L+H EG +V+ + N NS +A +WKEY K D+R+
Sbjct: 32 LGRGQGAADRGALIWLCYDALVHFALEGPFVYLSLVGNVANSDGLIASLWKEYGKADARW 91
Query: 98 ATRHTSVLGIESVASIVLGPLSLLAAYAVAKQKSYRYIFQFAISIAQLYGTIQYFLTAFL 157
+++ +E + + G L+L YA+ K+K YR+ Q + + +LYG FL +L
Sbjct: 92 VYFDPTIVSVEILTVALDGSLALFLIYAIVKEKYYRHFLQITLCVCELYGCWMTFLPEWL 151
Query: 158 -EGDNFASSRYYY-YSYYVGQSSIWVIVPMLIATRYWIKIHAICKRLQDKKVTKV 210
N +S + Y + Y + +WV++P L+ + W+++ K++ K+ + V
Sbjct: 152 TRSPNLNTSNWLYCWLYLFFFNGVWVLIPGLLLWQSWLEL----KKMHQKETSSV 202
>sp|Q55E32|EBP_DICDI Probable 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase
OS=Dictyostelium discoideum GN=ebp PE=2 SV=1
Length = 219
Score = 64.7 bits (156), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 82/174 (47%), Gaps = 23/174 (13%)
Query: 45 KIERLLICWWALTGLIHVFQEGYYVF-------------------TPDLFNDNSPNFMAE 85
K E+L++ W +GLIH+ EG Y F L N +P++ A+
Sbjct: 24 KREKLVVFWLLWSGLIHIILEGSYGFFAHEVTKASTVSFTEKMLELVPLENAWNPHWYAQ 83
Query: 86 IWKEYSKGDSRYATRHTSVLGIESVASIVLGPLSLLAAYAVAKQKSYRYIFQFAISIAQL 145
++ +Y+K D RYA + V+ +V G L V KQ R+ Q + Q
Sbjct: 84 LYSQYAKYDLRYAIQDPMVVFF-CFLELVQGAACFLLVICVIKQARIRHALQIFLCSIQG 142
Query: 146 YGTIQYFLTAFLEG---DNFASSRYYYYSYYVGQSSIWVIVPMLIATRYWIKIH 196
GT+ YF+T ++ G +S + + Y VG + +W++VP+++ + +I I+
Sbjct: 143 LGTVFYFITPYIYGLWEQQISSDPFELWVYVVGLNGLWLLVPIILTIQSFIAIN 196
>sp|C0QPF0|MUTS_PERMH DNA mismatch repair protein MutS OS=Persephonella marina (strain
DSM 14350 / EX-H1) GN=mutS PE=3 SV=1
Length = 870
Score = 32.0 bits (71), Expect = 3.1, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Query: 62 VFQEGYYVFTPDLFNDNSPNFMAEIWKEYSKGDSR------YATRHTSVLGIESVASIVL 115
V QEGY DL + F +++ ++Y D+ + T H S G ++ V+
Sbjct: 171 VVQEGYDF--SDLRSQFKSIFFSQLPEDYFSEDTHSEFLGFFKTGHISAFGFDTEEQNVI 228
Query: 116 GPLSLLAAYAVAKQKSY 132
PLS + YA QKS+
Sbjct: 229 YPLSAVWKYAKVTQKSF 245
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.136 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,837,672
Number of Sequences: 539616
Number of extensions: 2710867
Number of successful extensions: 7647
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 7621
Number of HSP's gapped (non-prelim): 15
length of query: 211
length of database: 191,569,459
effective HSP length: 112
effective length of query: 99
effective length of database: 131,132,467
effective search space: 12982114233
effective search space used: 12982114233
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)