Query 028272
Match_columns 211
No_of_seqs 109 out of 266
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 08:56:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028272.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028272hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05241 EBP: Emopamil binding 100.0 4E-63 8.8E-68 419.4 17.2 187 19-205 2-194 (194)
2 KOG4826 C-8,7 sterol isomerase 100.0 5.8E-54 1.2E-58 363.5 14.3 198 5-203 15-216 (229)
3 PF10914 DUF2781: Protein of u 96.9 0.00063 1.4E-08 55.4 2.9 145 47-195 1-149 (150)
4 PF01102 Glycophorin_A: Glycop 50.3 20 0.00044 28.6 3.3 25 18-42 70-94 (122)
5 PRK11877 psaI photosystem I re 41.3 39 0.00083 21.8 2.9 31 173-203 5-35 (38)
6 PF10225 DUF2215: Uncharacteri 31.7 96 0.0021 27.4 5.0 55 20-90 41-96 (249)
7 TIGR03052 PS_I_psaI photosyste 28.7 70 0.0015 19.7 2.5 27 177-203 2-28 (31)
8 PHA03235 DNA packaging protein 25.8 51 0.0011 30.9 2.3 35 172-206 204-238 (409)
9 PF04238 DUF420: Protein of un 23.9 3.8E+02 0.0083 21.5 8.5 32 104-135 77-108 (133)
10 CHL00186 psaI photosystem I su 21.8 1.5E+02 0.0032 18.9 3.1 30 175-204 3-32 (36)
11 TIGR01528 NMN_trans_PnuC nicot 20.9 1.1E+02 0.0024 25.6 3.2 37 114-150 7-51 (189)
12 PF12273 RCR: Chitin synthesis 20.5 80 0.0017 24.7 2.2 21 19-39 5-25 (130)
No 1
>PF05241 EBP: Emopamil binding protein ; InterPro: IPR007905 Emopamil binding protein (EBP) is a nonglycosylated type I integral membrane protein of endoplasmic reticulum and shows high level expression in epithelial tissues. The EBP protein has emopamil binding domains, including the sterol acceptor site and the catalytic centre, which show Delta8-Delta7 sterol isomerase activity. Human sterol isomerase, a homologue of mouse EBP, is suggested not only to play a role in cholesterol biosynthesis, but also to affect lipoprotein internalisation. In humans, mutations of EBP are known to cause the genetic disorder of X-linked dominant chondrodysplasia punctata (CDPX2). This syndrome of humans is lethal in most males, and affected females display asymmetric hyperkeratotic skin and skeletal abnormalities [].; GO: 0047750 cholestenol delta-isomerase activity, 0016125 sterol metabolic process, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=100.00 E-value=4e-63 Score=419.35 Aligned_cols=187 Identities=38% Similarity=0.733 Sum_probs=175.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-cCCCchhhHHHHHHHHhhhhhheeEeceeeeecccCCCCCChhHHHhhHhhhcccccc
Q 028272 19 HAWNGVSLLLIIFVTWIISGM-SQAKSKIERLLICWWALTGLIHVFQEGYYVFTPDLFNDNSPNFMAEIWKEYSKGDSRY 97 (211)
Q Consensus 19 l~~~~~~~~~i~~~~~~~~~~-~~~~~~~dr~~~~Wf~~~~~iH~~~EG~fv~~~~~~~~~~~~~~a~LWkeYa~~DsRY 97 (211)
++.+++++++++++++.++++ +|+++++||++++||++||+||+++||+|++++.++++.++++++|+||||+|+|+||
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~W~~~~~~iH~~~eG~f~~~~~~~~~~~~~~~~~lWkeYa~~D~RY 81 (194)
T PF05241_consen 2 LAIFLAGCAAVLLIAYLLSRRLPPSLSKGDRFVFLWFALDGLIHFFLEGYFVYFRPFSPGTSQSLLAQLWKEYAKADSRY 81 (194)
T ss_pred cHHHHHHHHHHHHHHHHHHhccCCCCchhhHHHHHHHHHHhhHHheEeeehheechhccccccchHHHHHHHHccCCccc
Confidence 567778888888888888866 6778999999999999999999999999999999998855569999999999999999
Q ss_pred ccCCCcEEeeehhHHHhhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcceeeeehhhhcC----CCCC-CCchhhhhh
Q 028272 98 ATRHTSVLGIESVASIVLGPLSLLAAYAVAKQKSYRYIFQFAISIAQLYGTIQYFLTAFLEG----DNFA-SSRYYYYSY 172 (211)
Q Consensus 98 ~~~D~~vv~~E~it~~~~GPl~l~~~~~i~~~~~~r~~lqivvs~~qLyG~vlyf~te~~~G----~~~~-~~~lyfW~y 172 (211)
+++|++++|+|++|+++|||+|+++++++.++|++||++|+++|++|+|||+|||+||+++| .+++ +|++|||+|
T Consensus 82 ~~~D~~vv~~e~~t~l~~Gpl~l~~~~~i~~~~~~r~~l~i~vs~~qlygtvlyf~~e~~~g~~~~~~~~~~~~ly~W~y 161 (194)
T PF05241_consen 82 LTSDPFVVCMESITVLLEGPLCLLAAYLIAKRSPYRHFLQIVVSVMQLYGTVLYFATEWLEGFVHSPNFSTPEPLYFWFY 161 (194)
T ss_pred ccCCCcEEeehhHHHHHHhHHHHHHHHHHHhCchHHHHHHHHHHHHhhheeeEEEEEHhhccCcCCccCCCCChhhheee
Confidence 99999999999999999999999999999999999999999999999999999999999999 4555 899999999
Q ss_pred hhccCcchhhhhHHHHHHHHHHHHHHHHHhhhh
Q 028272 173 YVGQSSIWVIVPMLIATRYWIKIHAICKRLQDK 205 (211)
Q Consensus 173 fV~~N~iWivvP~~~l~~s~~~i~~a~~~~~~~ 205 (211)
||++|++|+++|++++++|+++|++|++.+|+|
T Consensus 162 ~v~~N~iWivvP~~~l~~s~~~i~~a~~~~~~~ 194 (194)
T PF05241_consen 162 FVFPNGIWIVVPLLLLYQSWKEIARAFRAAQKK 194 (194)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999998875
No 2
>KOG4826 consensus C-8,7 sterol isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=5.8e-54 Score=363.46 Aligned_cols=198 Identities=35% Similarity=0.713 Sum_probs=186.6
Q ss_pred CCCccCcccchHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHhhhhhheeEeceeeeecccCCCC-CChhH
Q 028272 5 SGTDMALNFSTASLHAWNGVSLLLIIFVTWIISGMSQAKSKIERLLICWWALTGLIHVFQEGYYVFTPDLFNDN-SPNFM 83 (211)
Q Consensus 5 ~~~~~~n~~~~~~il~~~~~~~~~i~~~~~~~~~~~~~~~~~dr~~~~Wf~~~~~iH~~~EG~fv~~~~~~~~~-~~~~~ 83 (211)
+|..+||+++...++++.+.++.+++.++|+++++. +....||++.+|+++||+||+.+||||++++.+..++ +++++
T Consensus 15 l~~~v~i~~~~~~~~sil~~~~~l~v~~~~lls~~~-~~~~L~~w~l~Wl~vsGlih~v~egyfv~~p~~~~~~~~s~~L 93 (229)
T KOG4826|consen 15 LDNFVPIDRPTWHILSILLSVTLLLVVTTWLLSGRA-AVVVLDKWVLCWLAVSGLIHLVLEGYFVFRPETNLPANSSALL 93 (229)
T ss_pred ccccCcccchHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCCCcchhhHHHHhhCeeeeEEEeeEEeeecccCCccHHHHH
Confidence 577899999999999999999999999999998873 2457899999999999999999999999999876655 45699
Q ss_pred HHhhHhhhccccccccCCCcEEeeehhHHHhhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcceeeeehhhhcCCCC-
Q 028272 84 AEIWKEYSKGDSRYATRHTSVLGIESVASIVLGPLSLLAAYAVAKQKSYRYIFQFAISIAQLYGTIQYFLTAFLEGDNF- 162 (211)
Q Consensus 84 a~LWkeYa~~DsRY~~~D~~vv~~E~it~~~~GPl~l~~~~~i~~~~~~r~~lqivvs~~qLyG~vlyf~te~~~G~~~- 162 (211)
+|+||||+|+|+||...|++++|+|.+|++++||+++++.|+++++|++|+++|+.+|++|+||+++||.||+.+|++|
T Consensus 94 ~~~WKeYsk~D~RYv~~d~~vvc~eg~t~~l~g~Lsl~aIya~~k~~~~~~lLq~t~sV~~lyg~~lyFl~~~~~~~~~~ 173 (229)
T KOG4826|consen 94 AQLWKEYSKGDSRYVLTDDVVVCVEGITALLEGPLSLLAIYAILKEKRYRLLLQLTVSVCQLYGCVLYFLTEILDGFGHG 173 (229)
T ss_pred HHHHHHhcccceeEeccCCcEEeeeeehhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred -C-CCchhhhhhhhccCcchhhhhHHHHHHHHHHHHHHHHHhh
Q 028272 163 -A-SSRYYYYSYYVGQSSIWVIVPMLIATRYWIKIHAICKRLQ 203 (211)
Q Consensus 163 -~-~~~lyfW~yfV~~N~iWivvP~~~l~~s~~~i~~a~~~~~ 203 (211)
. +|++|+|+|++|+|+.|+++|.++++++|++++.+.+..+
T Consensus 174 ~~~~N~~Y~~~yliF~NgvWVliP~Lll~~~W~kL~~~~~~~e 216 (229)
T KOG4826|consen 174 LFTGNPLYFWFYLIFPNGVWVLIPGLLLFDLWKKLALAQSTLE 216 (229)
T ss_pred cCCCCceeeeEeEeecCceeeehhHHHHHHHHHHHhhHHHHhh
Confidence 3 9999999999999999999999999999999999998887
No 3
>PF10914 DUF2781: Protein of unknown function (DUF2781); InterPro: IPR016964 This group represents a predicted transmembrane protein 97.
Probab=96.94 E-value=0.00063 Score=55.38 Aligned_cols=145 Identities=14% Similarity=0.201 Sum_probs=90.8
Q ss_pred hHHHHHHHHhhhhhheeEeceeeeecccCCCCCChhHHHhhHhhhc--cccccccCCCcEEeeehhHHHhhhHHHHHHHH
Q 028272 47 ERLLICWWALTGLIHVFQEGYYVFTPDLFNDNSPNFMAEIWKEYSK--GDSRYATRHTSVLGIESVASIVLGPLSLLAAY 124 (211)
Q Consensus 47 dr~~~~Wf~~~~~iH~~~EG~fv~~~~~~~~~~~~~~a~LWkeYa~--~DsRY~~~D~~vv~~E~it~~~~GPl~l~~~~ 124 (211)
|.+...||+...++-+.+|..-++-+... +++..++=+-|-. .|-=..+.-.+..++-.++.++--|+.++.++
T Consensus 1 D~~~~~~f~~hi~itl~iD~~~~~P~~~~----p~~~~~l~~~yi~~~~D~l~~~~p~wf~~f~~~El~~qlP~~~~~~~ 76 (150)
T PF10914_consen 1 DLFYLIYFLIHIPITLLIDSQPVLPPSLF----PSPLQDLRDWYIATYNDPLMADPPPWFKSFVWIELFFQLPFFFYAIY 76 (150)
T ss_pred CeeHHHHHHHHHHHHHHHhCcccCchhhc----cHHHHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777766666676555432111 1234444444522 33333333456667888888999999999999
Q ss_pred HHHhc-CCchhHHHHHHHHHHHhcceeeeehhhhcCCCCC-CCchhhhhhhhccCcchhhhhHHHHHHHHHHH
Q 028272 125 AVAKQ-KSYRYIFQFAISIAQLYGTIQYFLTAFLEGDNFA-SSRYYYYSYYVGQSSIWVIVPMLIATRYWIKI 195 (211)
Q Consensus 125 ~i~~~-~~~r~~lqivvs~~qLyG~vlyf~te~~~G~~~~-~~~lyfW~yfV~~N~iWivvP~~~l~~s~~~i 195 (211)
+..++ ++.-..+.++=+..-..+++--.+.-+..|.... +..--.+-.+...|++++++|.++++++++++
T Consensus 77 ~l~~~~~~~~~~~~lvYg~~~~~Tt~~cl~~~~~~~~~~~~~~~~~~~~~l~~~Y~Py~liP~~~~~~m~~r~ 149 (150)
T PF10914_consen 77 ALLKGGSPWIRLLLLVYGVHVATTTLPCLGEVLHGGTWPDLSSPQKARWLLLAIYLPYLLIPLLMALDMFRRL 149 (150)
T ss_pred HHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999 7666666665554444444444433344333333 33334555678999999999999999998875
No 4
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=50.33 E-value=20 Score=28.62 Aligned_cols=25 Identities=8% Similarity=0.251 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCC
Q 028272 18 LHAWNGVSLLLIIFVTWIISGMSQA 42 (211)
Q Consensus 18 il~~~~~~~~~i~~~~~~~~~~~~~ 42 (211)
+++..++.+++|++++|.++|++.+
T Consensus 70 i~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 70 IFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4555566666666778888776543
No 5
>PRK11877 psaI photosystem I reaction center subunit VIII; Reviewed
Probab=41.32 E-value=39 Score=21.82 Aligned_cols=31 Identities=10% Similarity=0.189 Sum_probs=20.6
Q ss_pred hhccCcchhhhhHHHHHHHHHHHHHHHHHhh
Q 028272 173 YVGQSSIWVIVPMLIATRYWIKIHAICKRLQ 203 (211)
Q Consensus 173 fV~~N~iWivvP~~~l~~s~~~i~~a~~~~~ 203 (211)
|...|.+||+||+.-+.--.-.+.--+...+
T Consensus 5 ~aas~LPsI~VPlVGlvfPai~Mallf~yIe 35 (38)
T PRK11877 5 FAASWLPWIFVPLVGWVFPAVFMVLLGRYIT 35 (38)
T ss_pred HhHHhCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567899999999777655555554444443
No 6
>PF10225 DUF2215: Uncharacterized conserved protein (DUF2215); InterPro: IPR024233 This entry represents a domain that is found in a number of different proteins, including a family of transmembrane proteins.
Probab=31.65 E-value=96 Score=27.39 Aligned_cols=55 Identities=18% Similarity=0.141 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCc-hhhHHHHHHHHhhhhhheeEeceeeeecccCCCCCChhHHHhhHhh
Q 028272 20 AWNGVSLLLIIFVTWIISGMSQAKS-KIERLLICWWALTGLIHVFQEGYYVFTPDLFNDNSPNFMAEIWKEY 90 (211)
Q Consensus 20 ~~~~~~~~~i~~~~~~~~~~~~~~~-~~dr~~~~Wf~~~~~iH~~~EG~fv~~~~~~~~~~~~~~a~LWkeY 90 (211)
++..+..+.++++.++++|..|+.+ .+--+.-.|-+-.-++|...| .+..+|.||
T Consensus 41 g~~lGv~~s~li~~~~~~k~lPrk~~~~~~l~gg~~~~~y~l~~~~~----------------nl~~il~~~ 96 (249)
T PF10225_consen 41 GISLGVLASLLILLFQLSKLLPRKSMFYAVLYGGWSFGLYFLQQLWE----------------NLQSILEEY 96 (249)
T ss_pred hHHHHHHHHHHHHHHHHHHHccCcchhHHHHhhhhHHHHHHHHHHHH----------------HHHHHHHHH
Confidence 3333444555577888888888543 333445556332234544443 567889998
No 7
>TIGR03052 PS_I_psaI photosystem I reaction center subunit VIII. Members of this protein family are PsaI, subunit VIII of the photosystem I reaction center. This protein is found in both the Cyanobacteria and the chloroplasts of plants, but is absent from non-oxygenic photosynthetic bacteria such as Rhodobacter sphaeroides. Species that contain photosystem I also contain photosystem II, which splits water and releases molecular oxygen.
Probab=28.68 E-value=70 Score=19.72 Aligned_cols=27 Identities=7% Similarity=0.008 Sum_probs=17.3
Q ss_pred CcchhhhhHHHHHHHHHHHHHHHHHhh
Q 028272 177 SSIWVIVPMLIATRYWIKIHAICKRLQ 203 (211)
Q Consensus 177 N~iWivvP~~~l~~s~~~i~~a~~~~~ 203 (211)
|.+||+||+.-+.--.-.+.--+...+
T Consensus 2 ~LPsI~VPlVglvfPai~Ma~lf~yIe 28 (31)
T TIGR03052 2 WLPSIFVPLVGLVFPAVFMALLFRYIE 28 (31)
T ss_pred CCceeehhHHHHHHHHHHHHHHHHhee
Confidence 678999998776655545544444433
No 8
>PHA03235 DNA packaging protein UL33; Provisional
Probab=25.76 E-value=51 Score=30.86 Aligned_cols=35 Identities=26% Similarity=0.415 Sum_probs=26.6
Q ss_pred hhhccCcchhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 028272 172 YYVGQSSIWVIVPMLIATRYWIKIHAICKRLQDKK 206 (211)
Q Consensus 172 yfV~~N~iWivvP~~~l~~s~~~i~~a~~~~~~~~ 206 (211)
|.++...++.++|+.++.-+|..|.+.++..++++
T Consensus 204 y~i~l~i~~f~iPl~im~~~Y~~I~~~l~~~~~~~ 238 (409)
T PHA03235 204 FKVLLTLVWGIAPVVMMTWFYTFFYRTLKRASYKK 238 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 34445567899999999999999988886654433
No 9
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=23.94 E-value=3.8e+02 Score=21.46 Aligned_cols=32 Identities=25% Similarity=0.253 Sum_probs=23.5
Q ss_pred EEeeehhHHHhhhHHHHHHHHHHHhcCCchhH
Q 028272 104 VLGIESVASIVLGPLSLLAAYAVAKQKSYRYI 135 (211)
Q Consensus 104 vv~~E~it~~~~GPl~l~~~~~i~~~~~~r~~ 135 (211)
+...-.+-+.+..|+.+.+.+.-.+++..||-
T Consensus 77 iL~~Hi~LA~~~~pL~l~tl~~a~~~~~~~Hr 108 (133)
T PF04238_consen 77 ILISHIILAIVALPLVLYTLYRALRGRFTRHR 108 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcChHHHH
Confidence 33344556677889999999988888776664
No 10
>CHL00186 psaI photosystem I subunit VIII; Validated
Probab=21.83 E-value=1.5e+02 Score=18.93 Aligned_cols=30 Identities=13% Similarity=0.113 Sum_probs=19.8
Q ss_pred ccCcchhhhhHHHHHHHHHHHHHHHHHhhh
Q 028272 175 GQSSIWVIVPMLIATRYWIKIHAICKRLQD 204 (211)
Q Consensus 175 ~~N~iWivvP~~~l~~s~~~i~~a~~~~~~ 204 (211)
..|.+||+||+.-+.----.+.--+...++
T Consensus 3 as~LPsI~VPlVGlvfPai~Ma~lf~yIe~ 32 (36)
T CHL00186 3 ASNLPSILVPLVGLVFPAIAMASLFLYIQK 32 (36)
T ss_pred cccCchhHHhHHHHHHHHHHHHHHHHHhhh
Confidence 357899999997776555555555554444
No 11
>TIGR01528 NMN_trans_PnuC nicotinamide mononucleotide transporter PnuC. The PnuC protein of E. coli is membrane protein responsible for nicotinamide mononucleotide transport, subject to regulation by interaction with the NadR (also called NadI) protein (see TIGR01526). This model defines a region corresponding to most of the length of PnuC, found primarily in pathogens. The extreme N- and C-terminal regions are poorly conserved and not included in the alignment and model.
Probab=20.90 E-value=1.1e+02 Score=25.64 Aligned_cols=37 Identities=22% Similarity=0.450 Sum_probs=27.9
Q ss_pred hhhHHHHHHHHHHHhcCCchhHHHHHHHHH--------HHhccee
Q 028272 114 VLGPLSLLAAYAVAKQKSYRYIFQFAISIA--------QLYGTIQ 150 (211)
Q Consensus 114 ~~GPl~l~~~~~i~~~~~~r~~lqivvs~~--------qLyG~vl 150 (211)
+.+-++++++++..|+|..-.++.++.++. ++||+++
T Consensus 7 ~a~i~g~~~v~l~~k~~~~~w~~Giis~~ly~~i~~~~~lYgd~~ 51 (189)
T TIGR01528 7 IAGLMGILCVVLASEGKVSNYIFGLISAVIYLYIAYQTGLYAEVL 51 (189)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556888888889999999988887653 8888754
No 12
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=20.45 E-value=80 Score=24.72 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 028272 19 HAWNGVSLLLIIFVTWIISGM 39 (211)
Q Consensus 19 l~~~~~~~~~i~~~~~~~~~~ 39 (211)
+.++.+.++++++..+..+||
T Consensus 5 ~~iii~~i~l~~~~~~~~~rR 25 (130)
T PF12273_consen 5 FAIIIVAILLFLFLFYCHNRR 25 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334344444444
Done!