Query 028272
Match_columns 211
No_of_seqs 109 out of 266
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 14:34:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028272.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028272hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jb0_I Photosystem 1 reaction 35.3 25 0.00085 21.8 2.3 31 173-203 5-35 (38)
2 2klu_A T-cell surface glycopro 19.4 91 0.0031 21.6 3.0 22 11-32 3-24 (70)
3 3w1s_C Ubiquitin-like protein 15.8 1E+02 0.0035 22.1 2.8 26 65-91 49-75 (91)
4 3vw7_A Proteinase-activated re 14.6 1.6E+02 0.0054 25.1 4.2 36 168-203 184-219 (484)
5 1afo_A Glycophorin A; integral 13.8 2.3E+02 0.0079 17.5 3.5 22 18-39 16-37 (40)
6 4gdk_A Ubiquitin-like protein 13.1 1.3E+02 0.0043 21.5 2.6 28 65-94 49-77 (91)
7 1eo6_A GATE-16, golgi-associat 12.0 1.4E+02 0.0047 22.2 2.6 28 66-94 75-102 (117)
8 2r2q_A Gamma-aminobutyric acid 11.9 1.4E+02 0.0048 21.8 2.6 29 65-94 73-101 (110)
9 3v2y_A Sphingosine 1-phosphate 11.7 1.4E+02 0.0049 26.4 3.1 25 179-203 226-250 (520)
10 2zxe_G FXYD10, phospholemman-l 11.6 1.9E+02 0.0066 20.2 3.1 25 15-39 18-42 (74)
No 1
>1jb0_I Photosystem 1 reaction centre subunit VIII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.17.1 PDB: 3pcq_I*
Probab=35.29 E-value=25 Score=21.77 Aligned_cols=31 Identities=10% Similarity=0.250 Sum_probs=19.9
Q ss_pred hhccCcchhhhhHHHHHHHHHHHHHHHHHhh
Q 028272 173 YVGQSSIWVIVPMLIATRYWIKIHAICKRLQ 203 (211)
Q Consensus 173 fV~~N~iWivvP~~~l~~s~~~i~~a~~~~~ 203 (211)
|...|.+||+||+.-+.--.-.+.--|...+
T Consensus 5 ~aa~~LPsI~VPlVglvfPai~Mallf~yIe 35 (38)
T 1jb0_I 5 YAASFLPWIFIPVVCWLMPTVVMGLLFLYIE 35 (38)
T ss_dssp STTTTHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred hhhhhCChhhHhHHHHHHHHHHHHHHHHhhc
Confidence 3456889999999776655545544444443
No 2
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=19.37 E-value=91 Score=21.61 Aligned_cols=22 Identities=18% Similarity=0.052 Sum_probs=12.9
Q ss_pred cccchHHHHHHHHHHHHHHHHH
Q 028272 11 LNFSTASLHAWNGVSLLLIIFV 32 (211)
Q Consensus 11 n~~~~~~il~~~~~~~~~i~~~ 32 (211)
.+.+.+.+|.+.+++.++++++
T Consensus 3 l~~~~p~~LivlGg~~~lll~~ 24 (70)
T 2klu_A 3 LVPRGSMALIVLGGVAGLLLFI 24 (70)
T ss_dssp SSCCCSSHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHhHHHHHHHHH
Confidence 3455566666666666666633
No 3
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=15.82 E-value=1e+02 Score=22.11 Aligned_cols=26 Identities=12% Similarity=0.491 Sum_probs=20.4
Q ss_pred eceeeeecc-cCCCCCChhHHHhhHhhh
Q 028272 65 EGYYVFTPD-LFNDNSPNFMAEIWKEYS 91 (211)
Q Consensus 65 EG~fv~~~~-~~~~~~~~~~a~LWkeYa 91 (211)
|..|+|-.. +.+..+. .+++||++|.
T Consensus 49 ~alFlyVNn~f~Ps~d~-~~~~Ly~~fk 75 (91)
T 3w1s_C 49 DHVYCYINNSFAPSPQQ-NIGELWMQFK 75 (91)
T ss_dssp SCCEEEETTTBCCCTTS-BHHHHHHHHC
T ss_pred ceEEEEECCccCCCccc-HHHHHHHHhC
Confidence 889988654 5666555 8999999997
No 4
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}
Probab=14.55 E-value=1.6e+02 Score=25.12 Aligned_cols=36 Identities=25% Similarity=0.534 Sum_probs=28.6
Q ss_pred hhhhhhhccCcchhhhhHHHHHHHHHHHHHHHHHhh
Q 028272 168 YYYSYYVGQSSIWVIVPMLIATRYWIKIHAICKRLQ 203 (211)
Q Consensus 168 yfW~yfV~~N~iWivvP~~~l~~s~~~i~~a~~~~~ 203 (211)
++-.|+++...+-.++|+.++.-+|..|...++...
T Consensus 184 ~~~~~~~~~~~~~~~~P~~ii~~~Y~~I~~~l~~~~ 219 (484)
T 3vw7_A 184 YYAYYFSAFSAVFFFVPLIISTVCYVSIIRCLSSSA 219 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhh
Confidence 444466677778899999999999999988876554
No 5
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=13.75 E-value=2.3e+02 Score=17.52 Aligned_cols=22 Identities=9% Similarity=0.158 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 028272 18 LHAWNGVSLLLIIFVTWIISGM 39 (211)
Q Consensus 18 il~~~~~~~~~i~~~~~~~~~~ 39 (211)
|++..++..+.+++.+|.++|.
T Consensus 16 I~~vmaGiIG~IllI~y~I~rl 37 (40)
T 1afo_A 16 IFGVMAGVIGTILLISYGIRRL 37 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666777777654
No 6
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=13.06 E-value=1.3e+02 Score=21.52 Aligned_cols=28 Identities=7% Similarity=0.339 Sum_probs=19.9
Q ss_pred eceeeeecc-cCCCCCChhHHHhhHhhhccc
Q 028272 65 EGYYVFTPD-LFNDNSPNFMAEIWKEYSKGD 94 (211)
Q Consensus 65 EG~fv~~~~-~~~~~~~~~~a~LWkeYa~~D 94 (211)
|..|+|-.. +.+..+. .+++||++|. .|
T Consensus 49 ~alFlyVnn~~~P~~d~-~~~~Ly~~~k-~D 77 (91)
T 4gdk_A 49 EQLFIYVNQSFAPSPDQ-EVGTLYECFG-SD 77 (91)
T ss_dssp SCCEEEETTTBCCCTTC-BHHHHHHHHC-BT
T ss_pred CeEEEEECCccCCChhh-HHHHHHHHhC-CC
Confidence 567777554 4566554 7999999997 44
No 7
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=12.02 E-value=1.4e+02 Score=22.23 Aligned_cols=28 Identities=14% Similarity=0.341 Sum_probs=20.0
Q ss_pred ceeeeecccCCCCCChhHHHhhHhhhccc
Q 028272 66 GYYVFTPDLFNDNSPNFMAEIWKEYSKGD 94 (211)
Q Consensus 66 G~fv~~~~~~~~~~~~~~a~LWkeYa~~D 94 (211)
..|++.+..++..+. .+++|+++|.-.|
T Consensus 75 alfl~vn~~~p~~~~-~m~~LY~~~kd~D 102 (117)
T 1eo6_A 75 AIFLFVDKTVPQSSL-TMGQLYEKEKDED 102 (117)
T ss_dssp CCEEEBTTBCCCTTS-BHHHHHHHHCCTT
T ss_pred cEEEEECCEecCccc-hHHHHHHHhCCCC
Confidence 457777777777655 7999999995434
No 8
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=11.86 E-value=1.4e+02 Score=21.83 Aligned_cols=29 Identities=14% Similarity=0.420 Sum_probs=20.3
Q ss_pred eceeeeecccCCCCCChhHHHhhHhhhccc
Q 028272 65 EGYYVFTPDLFNDNSPNFMAEIWKEYSKGD 94 (211)
Q Consensus 65 EG~fv~~~~~~~~~~~~~~a~LWkeYa~~D 94 (211)
|..|++.+..++..+. .+++|+++|.-.|
T Consensus 73 ~alfl~vn~~~p~~~~-~m~~LY~~~kd~D 101 (110)
T 2r2q_A 73 DALFFFVNNTIPPTSA-TMGQLYEDNHEED 101 (110)
T ss_dssp SCCEEEBTTBCCCTTS-BHHHHHHHHCCTT
T ss_pred CcEEEEECCEecCccC-hHHHHHHHcCCCC
Confidence 3457777777777655 7899999994333
No 9
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*
Probab=11.67 E-value=1.4e+02 Score=26.38 Aligned_cols=25 Identities=8% Similarity=0.135 Sum_probs=21.1
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHhh
Q 028272 179 IWVIVPMLIATRYWIKIHAICKRLQ 203 (211)
Q Consensus 179 iWivvP~~~l~~s~~~i~~a~~~~~ 203 (211)
+-.++|+.++.-+|..|...++..+
T Consensus 226 ~~~~lPl~ii~~~Y~~I~~~l~~~~ 250 (520)
T 3v2y_A 226 TVFTLLLLSIVILYCRIYSLVRTRN 250 (520)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3479999999999999998887654
No 10
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=11.59 E-value=1.9e+02 Score=20.22 Aligned_cols=25 Identities=12% Similarity=0.161 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc
Q 028272 15 TASLHAWNGVSLLLIIFVTWIISGM 39 (211)
Q Consensus 15 ~~~il~~~~~~~~~i~~~~~~~~~~ 39 (211)
...+-++.+++++.++.+..++|++
T Consensus 18 tLRigGLifA~vLfi~GI~iilS~k 42 (74)
T 2zxe_G 18 RLRVVGLIVAAVLCVIGIIILLAGK 42 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HheeccchhHHHHHHHHHHHHHcCc
Confidence 3456677777777777888888887
Done!