Query 028272
Match_columns 211
No_of_seqs 109 out of 266
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 14:34:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028272.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028272hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jb0i_ f.23.17.1 (I:) Subunit 8.3 43 0.0032 19.0 0.3 9 178-186 10-18 (38)
2 d1r44a_ d.65.1.4 (A:) D-Ala-D- 6.3 64 0.0046 24.5 0.5 14 92-105 16-29 (202)
3 d1z3xa2 a.261.1.1 (A:88-235) G 6.0 93 0.0068 22.5 1.3 15 82-98 63-77 (148)
4 d1y6ia2 a.261.1.1 (A:83-233) M 5.9 96 0.007 22.5 1.3 15 82-98 63-77 (151)
5 d1r4pb_ b.40.2.1 (B:) Verotoxi 5.5 1.7E+02 0.012 18.3 2.1 44 95-158 11-57 (70)
6 d1c4qa_ b.40.2.1 (A:) Verotoxi 5.0 1.9E+02 0.014 18.0 2.1 44 95-158 12-58 (69)
7 d1wz3a1 d.15.1.7 (A:10-93) Aut 4.5 2E+02 0.015 18.8 2.1 27 64-91 42-69 (84)
8 d3dtub2 f.17.2.1 (B:30-129) Ba 4.4 1.2E+02 0.0085 19.9 0.9 12 179-190 74-85 (100)
9 d2p7ja1 d.110.6.2 (A:181-273) 3.9 3.2E+02 0.024 17.5 3.0 47 65-111 16-73 (93)
10 d1blxa_ d.144.1.7 (A:) Cyclin- 3.9 1.1E+02 0.0084 22.8 0.5 20 144-163 174-193 (305)
No 1
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=8.34 E-value=43 Score=19.02 Aligned_cols=9 Identities=22% Similarity=1.025 Sum_probs=7.3
Q ss_pred cchhhhhHH
Q 028272 178 SIWVIVPML 186 (211)
Q Consensus 178 ~iWivvP~~ 186 (211)
.+||+||..
T Consensus 10 LPwI~iPvv 18 (38)
T d1jb0i_ 10 LPWIFIPVV 18 (38)
T ss_dssp HHHHHHHHH
T ss_pred cchhHHHHH
Confidence 589999974
No 2
>d1r44a_ d.65.1.4 (A:) D-Ala-D-Ala dipeptidase VanX {Enterococcus faecium [TaxId: 1352]}
Probab=6.31 E-value=64 Score=24.50 Aligned_cols=14 Identities=29% Similarity=0.287 Sum_probs=11.6
Q ss_pred ccccccccCCCcEE
Q 028272 92 KGDSRYATRHTSVL 105 (211)
Q Consensus 92 ~~DsRY~~~D~~vv 105 (211)
+-|-||++.|+|+=
T Consensus 16 ~~DlrYat~~NF~g 29 (202)
T d1r44a_ 16 RWDAKYATWDNFTG 29 (202)
T ss_dssp EECCGGGSSCSTTS
T ss_pred EEEeeeCcCCCcCC
Confidence 47999999999863
No 3
>d1z3xa2 a.261.1.1 (A:88-235) GUN4-like protein Ycf53 {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.03 E-value=93 Score=22.49 Aligned_cols=15 Identities=13% Similarity=0.640 Sum_probs=11.5
Q ss_pred hHHHhhHhhhccccccc
Q 028272 82 FMAEIWKEYSKGDSRYA 98 (211)
Q Consensus 82 ~~a~LWkeYa~~DsRY~ 98 (211)
-..+||.+| +|.|++
T Consensus 63 ~ID~LW~~y--S~G~FG 77 (148)
T d1z3xa2 63 TIDQLWLAF--SLGRFG 77 (148)
T ss_dssp HHHHHHHHT--TTTCCS
T ss_pred HHHHHHHHh--cCCccC
Confidence 567999999 455776
No 4
>d1y6ia2 a.261.1.1 (A:83-233) Mg-chelatase cofactor Gun4 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=5.90 E-value=96 Score=22.52 Aligned_cols=15 Identities=13% Similarity=0.428 Sum_probs=11.9
Q ss_pred hHHHhhHhhhccccccc
Q 028272 82 FMAEIWKEYSKGDSRYA 98 (211)
Q Consensus 82 ~~a~LWkeYa~~DsRY~ 98 (211)
-..|||.+|| |.|++
T Consensus 63 ~ID~LW~~yS--~GrFG 77 (151)
T d1y6ia2 63 TINALWWLHS--NGNFG 77 (151)
T ss_dssp HHHHHHHHTT--TTCSS
T ss_pred HHHHHHHHhc--CCccC
Confidence 5679999995 77776
No 5
>d1r4pb_ b.40.2.1 (B:) Verotoxin-1/shiga-toxin, B-pentamer {Shigella dysenteriae, toxin II [TaxId: 622]}
Probab=5.51 E-value=1.7e+02 Score=18.30 Aligned_cols=44 Identities=25% Similarity=0.238 Sum_probs=32.8
Q ss_pred cccccCCCcEEee---ehhHHHhhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcceeeeehhhhc
Q 028272 95 SRYATRHTSVLGI---ESVASIVLGPLSLLAAYAVAKQKSYRYIFQFAISIAQLYGTIQYFLTAFLE 158 (211)
Q Consensus 95 sRY~~~D~~vv~~---E~it~~~~GPl~l~~~~~i~~~~~~r~~lqivvs~~qLyG~vlyf~te~~~ 158 (211)
++|-..|.|.|-+ |.+| .|+-+|-.+-.+||-|.-++.-+.-.+
T Consensus 11 skyneddtftvkvagkeywt--------------------nrwnlqpllqsaqltgmtvtiks~tc~ 57 (70)
T d1r4pb_ 11 SKYNEDDTFTVKVDGKEYWT--------------------SRWNLQPLLQSAQLTGMTVTIKSSTCE 57 (70)
T ss_dssp EEECTTSCEEEEETTEEEEE--------------------CCTTHHHHHHHHHHHTCEEEEECSCCC
T ss_pred EeecCCceEEEEecCceeec--------------------cccchhhHhhhceecceEEEEEecccc
Confidence 4677788887764 3333 477788888889999999988776655
No 6
>d1c4qa_ b.40.2.1 (A:) Verotoxin-1/shiga-toxin, B-pentamer {Escherichia coli [TaxId: 562]}
Probab=5.01 E-value=1.9e+02 Score=17.98 Aligned_cols=44 Identities=20% Similarity=0.162 Sum_probs=32.9
Q ss_pred cccccCCCcEEee---ehhHHHhhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcceeeeehhhhc
Q 028272 95 SRYATRHTSVLGI---ESVASIVLGPLSLLAAYAVAKQKSYRYIFQFAISIAQLYGTIQYFLTAFLE 158 (211)
Q Consensus 95 sRY~~~D~~vv~~---E~it~~~~GPl~l~~~~~i~~~~~~r~~lqivvs~~qLyG~vlyf~te~~~ 158 (211)
++|-..|.|.+-+ |.+| .|.-+|-.+-.+||-|.-++.-+.-.+
T Consensus 12 skyneddtftvkv~gkeywt--------------------nrwnlqpllqsaqltgmtvtiksntc~ 58 (69)
T d1c4qa_ 12 TKYNDDDTFTVKVGDKELAT--------------------NRANLQSLLLSAQITGMTVTIKTNACH 58 (69)
T ss_dssp EEECTTSCEEEEETTEEEEE--------------------CCTTHHHHHHHHHHHTCEEEEECSCCS
T ss_pred EeecCCCceEEeecCceehh--------------------cccchhhHHhhceecceEEEEEecccc
Confidence 4677788888775 3333 467788888889999999988776655
No 7
>d1wz3a1 d.15.1.7 (A:10-93) Autophagy-related protein 12b (APG12b) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=4.49 E-value=2e+02 Score=18.78 Aligned_cols=27 Identities=4% Similarity=0.343 Sum_probs=19.3
Q ss_pred Eeceeeeeccc-CCCCCChhHHHhhHhhh
Q 028272 64 QEGYYVFTPDL-FNDNSPNFMAEIWKEYS 91 (211)
Q Consensus 64 ~EG~fv~~~~~-~~~~~~~~~a~LWkeYa 91 (211)
.|..|+|-... -|+.+. -.+.||.-|+
T Consensus 42 ~dsvf~Yin~sFaPspDe-~vg~Ly~~f~ 69 (84)
T d1wz3a1 42 SDSLFVYVNSAFSPNPDE-SVIDLYNNFG 69 (84)
T ss_dssp CSSCEEEEEEEECCCTTS-BHHHHHHHHC
T ss_pred CCeEEEEEccccCCChhh-HHHHHHHhcC
Confidence 47888886544 445444 7899999996
No 8
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.45 E-value=1.2e+02 Score=19.86 Aligned_cols=12 Identities=42% Similarity=0.969 Sum_probs=8.8
Q ss_pred chhhhhHHHHHH
Q 028272 179 IWVIVPMLIATR 190 (211)
Q Consensus 179 iWivvP~~~l~~ 190 (211)
+|.++|.+++.-
T Consensus 74 iWTviP~lILi~ 85 (100)
T d3dtub2 74 AWTIVPIVILVA 85 (100)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 488899877654
No 9
>d2p7ja1 d.110.6.2 (A:181-273) GGDEF family protein VP0354 {Vibrio parahaemolyticus [TaxId: 670]}
Probab=3.95 E-value=3.2e+02 Score=17.46 Aligned_cols=47 Identities=21% Similarity=0.547 Sum_probs=29.6
Q ss_pred eceeeeecc------cC-CCCCC-h---hHHHhhHhhhccccccccCCCcEEeeehhH
Q 028272 65 EGYYVFTPD------LF-NDNSP-N---FMAEIWKEYSKGDSRYATRHTSVLGIESVA 111 (211)
Q Consensus 65 EG~fv~~~~------~~-~~~~~-~---~~a~LWkeYa~~DsRY~~~D~~vv~~E~it 111 (211)
|||++..+. +| +++.+ + -..++|++-...++=....|....+-.+|.
T Consensus 16 ~Gy~L~~~~~~~~wgfm~~er~~~tf~~~~P~lW~~I~~~~~Gq~~~~~glftf~tI~ 73 (93)
T d2p7ja1 16 KGFYIASPDESRLYGDIIPERSQFNFSNMYPDIWPRVVSEQAGYSYSGEHLIAFSSIK 73 (93)
T ss_dssp TSBEEECSCGGGBTTTTSTTCTTCBHHHHCTTTHHHHHTTCCEEEECSSEEEEEEEEE
T ss_pred CCcEECCCCcccccccccCccccCChhhhChHHHHHHhcCCCceEEcCCCEEEEEEEE
Confidence 899999853 23 22222 1 234889999887776666666666655544
No 10
>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.94 E-value=1.1e+02 Score=22.79 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=17.4
Q ss_pred HHhcceeeeehhhhcCCCCC
Q 028272 144 QLYGTIQYFLTAFLEGDNFA 163 (211)
Q Consensus 144 qLyG~vlyf~te~~~G~~~~ 163 (211)
+..||..|-+||.+.|.+++
T Consensus 174 ~~~gT~~Y~APE~~~~~~y~ 193 (305)
T d1blxa_ 174 SVVVTLWYRAPEVLLQSSYA 193 (305)
T ss_dssp CCCCCCTTCCHHHHTTCCCC
T ss_pred CcccChhhcCcchhcCCCCC
Confidence 45689999999999998877
Done!