Query 028274
Match_columns 211
No_of_seqs 125 out of 204
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 08:58:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028274.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028274hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3037 Cell membrane glycopro 100.0 5.8E-52 1.3E-56 372.7 15.9 184 6-190 2-214 (330)
2 PF04683 Proteasom_Rpn13: Prot 100.0 8.5E-40 1.9E-44 246.3 11.2 83 22-104 1-85 (85)
3 COG3128 PiuC Uncharacterized i 41.7 20 0.00044 31.7 2.3 34 63-106 150-184 (229)
4 cd01230 PH_EFA6 EFA6 Pleckstri 40.8 1.8E+02 0.0039 23.0 9.5 39 81-122 75-113 (117)
5 TIGR01204 bioW 6-carboxyhexano 38.7 95 0.002 27.9 6.0 21 22-43 105-128 (232)
6 PF08410 DUF1737: Domain of un 37.3 28 0.0006 24.5 2.0 17 107-123 12-28 (54)
7 COG1111 MPH1 ERCC4-like helica 37.3 19 0.00041 35.9 1.6 36 60-100 440-489 (542)
8 PF14008 Metallophos_C: Iron/z 27.5 1.1E+02 0.0023 21.1 3.7 33 33-65 29-61 (62)
9 PRK15195 fimbrial chaperone pr 27.1 4.3E+02 0.0093 23.1 9.7 77 21-101 25-109 (229)
10 PRK15188 fimbrial chaperone pr 26.5 4.5E+02 0.0097 23.2 10.0 77 21-101 27-111 (228)
11 PRK15211 fimbrial chaperone pr 25.8 4.6E+02 0.0099 23.0 10.0 78 20-101 21-106 (229)
12 PF15355 Chisel: Stretch-respo 24.4 2.7E+02 0.0059 21.3 5.5 16 173-188 64-79 (87)
13 PF11191 DUF2782: Protein of u 23.7 1.1E+02 0.0025 23.4 3.5 43 63-108 38-82 (105)
14 PF13897 GOLD_2: Golgi-dynamic 22.5 78 0.0017 26.3 2.5 17 84-100 111-132 (136)
15 PHA02550 32 single-stranded DN 22.4 1E+02 0.0023 28.7 3.6 27 79-123 130-156 (304)
16 cd01253 PH_beta_spectrin Beta- 21.9 3.3E+02 0.0071 19.9 7.5 44 72-118 58-103 (104)
17 PF11625 DUF3253: Protein of u 21.4 45 0.00097 25.4 0.9 25 20-44 55-81 (83)
No 1
>KOG3037 consensus Cell membrane glycoprotein [General function prediction only]
Probab=100.00 E-value=5.8e-52 Score=372.75 Aligned_cols=184 Identities=43% Similarity=0.705 Sum_probs=146.2
Q ss_pred CCcCCCCCceeEEEeceeeEecC--CcEEecCCCcEEEEEeCCCCceEEEEeeCCCCCcccceEeeCCceEEEEecc-CC
Q 028274 6 TAASPAMQEILLEFRAGKMTFDG--KKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQ-AS 82 (211)
Q Consensus 6 ~~~~~~~~~~LieFkAGKm~~~g--~~V~Pd~rKG~l~l~~~edgl~hf~W~~R~t~~vEddlIlfPgea~F~kV~~-~t 82 (211)
.+.++.++.+||+||||||.+.| ++|+||+|||+|||.+++|||+||||++|+++.||||+||||+|++|+||++ ||
T Consensus 2 ~~ss~s~~~~lVeFkAGkm~l~~gtk~v~pDprKGli~i~~sddgliHF~WkdR~~g~VEdDlIifPde~eF~kV~qC~t 81 (330)
T KOG3037|consen 2 TESSNSSSSTLVEFKAGKMRLVGGTKLVTPDPRKGLIYIKRSDDGLIHFCWKDRESGNVEDDLIVFPDEAEFKKVDQCKT 81 (330)
T ss_pred ccccccccceEEEEecceEEecCCcceeecccccceEEEeeCCCceEEEEecccCCCCcccceEEccCceeEEECCCCCC
Confidence 45678999999999999999998 8999999999999999999999999999999999999999999999999999 99
Q ss_pred CeEEEEEEcCCCceeEEEccCCCchhhHHHHHHHHHHhcCCcc---------cccccccccC-----------------C
Q 028274 83 GRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRPLV---------FVNEEELDAS-----------------V 136 (211)
Q Consensus 83 GRVyvLkF~ss~~k~FFWmQe~~~~~D~~~~~~vN~~i~~p~~---------~~~~~~~~~~-----------------~ 136 (211)
||||+|||+|+.|+|||||||+++++|+++|++||++||+|+- ..+....+.. .
T Consensus 82 GRVY~LKFkSs~~r~FFWMQE~~~d~D~e~c~rvNelln~p~~~~~~~~~~~~~~l~~~~~s~~~~lfgg~~~~~~L~~~ 161 (330)
T KOG3037|consen 82 GRVYVLKFKSSDQRLFFWMQEPSDDNDKELCSRVNELLNKPPTSRPLGASGSGSMLNDDSKSQLMQLFGGSGMNDGLEAL 161 (330)
T ss_pred CcEEEEEecCCCeeEEEEeecCCCCcCHHHHHHHHHHHcCCCccccccccccccccccccHHHHHhhcCcccccchhhhh
Confidence 9999999999999999999999999999999999999999820 0000000000 0
Q ss_pred cccccccccccccccCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHhcCC
Q 028274 137 PLQVSEDMVEDDVSSRAGNLVVPNLGGEAISDVTSSSGPVKLEDLQRIFSNIGP 190 (211)
Q Consensus 137 ~~~~~~~~~~~~~ss~~~~~~~p~~~~~~~~~~~s~~~~~~l~~lq~iLs~~~~ 190 (211)
..+....+.+...++.+++...+++.+.. +...+++.|...++.+++++++.+
T Consensus 162 ~~e~l~~~~~s~~~s~~~~~~~~t~es~~-~~~~~~~~~~~~~~~~~~~~~~~~ 214 (330)
T KOG3037|consen 162 TVEQLNSLAESNESSLPGNSVPQTPESSV-SGPESPSEPNKEEDVSNSLSTLSP 214 (330)
T ss_pred hHhhhcccccCccccccccccccCccccc-cCCCCCCccccchhhcccccCCch
Confidence 01111222222333445555556655543 333456899999999999998754
No 2
>PF04683 Proteasom_Rpn13: Proteasome complex subunit Rpn13 ubiquitin receptor; InterPro: IPR006773 This family was thought originally to be involved in cell-adhesion [, ], but the members are now known to be proteasome subunit Rpn13, a novel ubiquitin receptor. The 26S proteasome is a huge macromolecular protein-degradation machine consisting of a proteolytically active 20S core, in the form of four disc-like proteins, and one or two 19S regulatory particles. The regulatory particle(s) sit on the top and or bottom of the core, de-ubiquitinate the substrate peptides, unfold them and guide them into the narrow channel through the centre of the core. Rpn13 and its homologues dock onto the regulatory particle through the N-terminal region which binds Rpn2. The C-terminal part of the domain binds de-ubiquitinating enzyme Uch37/UCHL5 and enhances its isopeptidase activity. Rpn13 binds ubiquitin via a conserved amino-terminal region called the pleckstrin-like receptor for ubiquitin, termed Pru, domain []. The domain forms two contiguous anti-parallel beta-sheets with a configuration similar to the pleckstrin-homology domain (PHD) fold []. Rpn13's ability to bind ubiquitin and the proteasome subunit Rpn2/S1 simultaneously supports evidence of its role as a ubiquitin receptor. Finally, when complexed to di-ubiquitin, via the Pru, and Uch37 via the C-terminal part, it frees up the distal ubiquitin for de-ubiquitination by the Uch37 []. ; GO: 0005634 nucleus, 0005737 cytoplasm; PDB: 2Z4D_A 2KR0_A 2Z59_A 2R2Y_A.
Probab=100.00 E-value=8.5e-40 Score=246.34 Aligned_cols=83 Identities=55% Similarity=1.058 Sum_probs=71.8
Q ss_pred eeeEecCCcEEecCCCcEEEEEeCCCCceEEEEeeCCC-CCcccceEeeCCceEEEEecc-CCCeEEEEEEcCCCceeEE
Q 028274 22 GKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTR-NVVEDDQIVFPHEAVFEKVNQ-ASGRVYILKFNTDDRKFFL 99 (211)
Q Consensus 22 GKm~~~g~~V~Pd~rKG~l~l~~~edgl~hf~W~~R~t-~~vEddlIlfPgea~F~kV~~-~tGRVyvLkF~ss~~k~FF 99 (211)
|||+++|++|+||+|||+|+|++++|+|+||||++|++ +.+|+|+||||||++|++|++ +|||||+|||++|+++|||
T Consensus 1 Gk~~~~~~~V~pd~~KG~l~l~~~~d~l~~f~W~~r~~~~~~e~d~il~pg~~~f~~V~~c~tGRVy~LkF~ss~~~~fF 80 (85)
T PF04683_consen 1 GKMDLDGKIVTPDPRKGLLYLYKSEDGLLHFCWKPRDTTGEVEDDLILFPGDATFKKVPQCKTGRVYVLKFKSSDQRYFF 80 (85)
T ss_dssp EEEEEETTEEEE-SS-EEEEEEETTTS-EEEEEEETST---EEEEEEE-TTTEEEEE-TTSSTS-EEEEEETTTT-EEEE
T ss_pred CcEEEeCCEEeECCCCEEEEEEECCCCeEEEEEEEcCcCCCcccceecCCCCeEEEECCcCCCCeEEEEEECCCCccEEE
Confidence 99999999999999999999999999999999999999 999999999999999999999 9999999999999999999
Q ss_pred EccCC
Q 028274 100 WMQEP 104 (211)
Q Consensus 100 WmQe~ 104 (211)
|||||
T Consensus 81 WmQe~ 85 (85)
T PF04683_consen 81 WMQEP 85 (85)
T ss_dssp EE-SS
T ss_pred EecCC
Confidence 99996
No 3
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=41.65 E-value=20 Score=31.71 Aligned_cols=34 Identities=21% Similarity=0.562 Sum_probs=25.4
Q ss_pred ccceEeeCCceEEEEecc-CCCeEEEEEEcCCCceeEEEccCCCc
Q 028274 63 EDDQIVFPHEAVFEKVNQ-ASGRVYILKFNTDDRKFFLWMQEPKA 106 (211)
Q Consensus 63 EddlIlfPgea~F~kV~~-~tGRVyvLkF~ss~~k~FFWmQe~~~ 106 (211)
--|+|++|.+ +..+|.+ +-|+=|. .|||.|.---
T Consensus 150 AGdLVlypSt-SlH~VtPVTRg~R~a---------sffW~qslir 184 (229)
T COG3128 150 AGDLVLYPST-SLHEVTPVTRGERFA---------SFFWIQSLIR 184 (229)
T ss_pred CCCEEEcccc-cceeccccccCceEE---------EeeehHHHhh
Confidence 4689999995 5889988 7675443 5999998543
No 4
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=40.85 E-value=1.8e+02 Score=22.98 Aligned_cols=39 Identities=21% Similarity=0.279 Sum_probs=26.5
Q ss_pred CCCeEEEEEEcCCCceeEEEccCCCchhhHHHHHHHHHHhcC
Q 028274 81 ASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINR 122 (211)
Q Consensus 81 ~tGRVyvLkF~ss~~k~FFWmQe~~~~~D~~~~~~vN~~i~~ 122 (211)
+--.||.|+- .+++.|+| |-++.+.=..++.+||...+.
T Consensus 75 Kr~~VF~L~~-~~g~~~lf--qA~~~ee~~~Wi~~I~~~~~~ 113 (117)
T cd01230 75 KKPHVFRLRT-ADWREFLF--QTSSLKELQSWIERINVVAAA 113 (117)
T ss_pred CCCcEEEEEc-CCCCEEEE--ECCCHHHHHHHHHHHHHHHHh
Confidence 4445666554 23455554 888888778999999988753
No 5
>TIGR01204 bioW 6-carboxyhexanoate--CoA ligase. Alternate name: pimeloyl-CoA synthase.
Probab=38.70 E-value=95 Score=27.90 Aligned_cols=21 Identities=33% Similarity=0.752 Sum_probs=15.9
Q ss_pred eeeEec---CCcEEecCCCcEEEEE
Q 028274 22 GKMTFD---GKKVVPDSRKGLVRIA 43 (211)
Q Consensus 22 GKm~~~---g~~V~Pd~rKG~l~l~ 43 (211)
|=|.++ |+++.||..||. ++.
T Consensus 105 GA~llda~tG~RLe~d~~RGV-Rvs 128 (232)
T TIGR01204 105 GAVLMDIETGERLDEDKEKGV-RVS 128 (232)
T ss_pred ceEEEecCCCccccCCCCcce-EEE
Confidence 556666 899999999995 553
No 6
>PF08410 DUF1737: Domain of unknown function (DUF1737); InterPro: IPR013619 This domain of unknown function is found at the N terminus of bacterial and viral hypothetical proteins.
Probab=37.34 E-value=28 Score=24.52 Aligned_cols=17 Identities=29% Similarity=0.544 Sum_probs=14.9
Q ss_pred hhhHHHHHHHHHHhcCC
Q 028274 107 EEDSQLCNSVNYFINRP 123 (211)
Q Consensus 107 ~~D~~~~~~vN~~i~~p 123 (211)
..|+++|+||++.|+..
T Consensus 12 ~d~~~fc~rVt~aL~~G 28 (54)
T PF08410_consen 12 PDDSAFCHRVTEALNEG 28 (54)
T ss_pred CChHHHHHHHHHHHHcC
Confidence 45789999999999985
No 7
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=37.28 E-value=19 Score=35.85 Aligned_cols=36 Identities=25% Similarity=0.521 Sum_probs=24.8
Q ss_pred CCcccceEeeCCceEEEEec--------------cCCCeEEEEEEcCCCceeEEE
Q 028274 60 NVVEDDQIVFPHEAVFEKVN--------------QASGRVYILKFNTDDRKFFLW 100 (211)
Q Consensus 60 ~~vEddlIlfPgea~F~kV~--------------~~tGRVyvLkF~ss~~k~FFW 100 (211)
...|-|+||| ++.|+ +..||||+|-...+..-..||
T Consensus 440 DIp~vDlVif-----YEpvpSeIR~IQR~GRTGR~r~Grv~vLvt~gtrdeayy~ 489 (542)
T COG1111 440 DIPEVDLVIF-----YEPVPSEIRSIQRKGRTGRKRKGRVVVLVTEGTRDEAYYY 489 (542)
T ss_pred CCCcccEEEE-----ecCCcHHHHHHHhhCccccCCCCeEEEEEecCchHHHHHH
Confidence 3467899999 66665 267999999996543334444
No 8
>PF14008 Metallophos_C: Iron/zinc purple acid phosphatase-like protein C; PDB: 3KBP_B 1KBP_B 4KBP_C 2QFP_B 2QFR_A 1XZW_B.
Probab=27.53 E-value=1.1e+02 Score=21.12 Aligned_cols=33 Identities=21% Similarity=0.389 Sum_probs=20.9
Q ss_pred ecCCCcEEEEEeCCCCceEEEEeeCCCCCcccc
Q 028274 33 PDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDD 65 (211)
Q Consensus 33 Pd~rKG~l~l~~~edgl~hf~W~~R~t~~vEdd 65 (211)
-+..-|+.+|..-....++|+|..-+++.+=|+
T Consensus 29 r~~~~Gy~~l~v~N~T~l~~e~i~~~~g~v~D~ 61 (62)
T PF14008_consen 29 RDSEYGYGRLTVANATHLHWEFIRSDDGSVLDE 61 (62)
T ss_dssp EE---EEEEEEE-SSSEEEEEEEETTS-T-CEE
T ss_pred eccccCEEEEEEEcCCeEEEEEEECCCCcEecC
Confidence 446778888876567889999988877766554
No 9
>PRK15195 fimbrial chaperone protein FimC; Provisional
Probab=27.14 E-value=4.3e+02 Score=23.12 Aligned_cols=77 Identities=19% Similarity=0.388 Sum_probs=43.8
Q ss_pred ceeeEecCCcEEecC-CC-cEEEEEeCC-CC-ceEEEEeeCCCCCcccceEeeCCceEEEEeccCCCeEEEEEEcC----
Q 028274 21 AGKMTFDGKKVVPDS-RK-GLVRIARGE-HG-LIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQASGRVYILKFNT---- 92 (211)
Q Consensus 21 AGKm~~~g~~V~Pd~-rK-G~l~l~~~e-dg-l~hf~W~~R~t~~vEddlIlfPgea~F~kV~~~tGRVyvLkF~s---- 92 (211)
|| ..+++++|.=.. .| -.|.|...+ +. .+--.|.+...+..+.+|++.|- +-|++...+....+....
T Consensus 25 Ag-i~i~~TRvIy~~~~~~~si~l~N~~~~~~~LvQsWv~~~~~~~~~pfivtPP---lfrl~p~~~q~lRIi~~~~~LP 100 (229)
T PRK15195 25 GG-IALGATRVIYPADAKQTSLAIRNSHTNERYLVNSWIENSSGVKEKSFIVTPP---LFVSEPKSENTLRIIYAGPPLA 100 (229)
T ss_pred ee-EEECCeEEEEeCCCceEEEEEEeCCCCccEEEEEEecCCCCCccCCEEEcCC---eEEECCCCceEEEEEECCCCCC
Confidence 55 557776654333 33 344554433 32 55556997555444468999998 778877333333222222
Q ss_pred CCceeEEEc
Q 028274 93 DDRKFFLWM 101 (211)
Q Consensus 93 s~~k~FFWm 101 (211)
.++-..||+
T Consensus 101 ~DrESlf~L 109 (229)
T PRK15195 101 ADRESLFWM 109 (229)
T ss_pred CCeeEEEEE
Confidence 256788998
No 10
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=26.49 E-value=4.5e+02 Score=23.16 Aligned_cols=77 Identities=13% Similarity=0.350 Sum_probs=47.1
Q ss_pred ceeeEecCCcE-EecC-CCcEEEEEeCC-CC-ceEEEEeeCCCCCcccceEeeCCceEEEEeccCCCeEEEEEEcC----
Q 028274 21 AGKMTFDGKKV-VPDS-RKGLVRIARGE-HG-LIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQASGRVYILKFNT---- 92 (211)
Q Consensus 21 AGKm~~~g~~V-~Pd~-rKG~l~l~~~e-dg-l~hf~W~~R~t~~vEddlIlfPgea~F~kV~~~tGRVyvLkF~s---- 92 (211)
|| ..+++++| -+.. +-..|.|...+ +. .+--.|.+...+.....|++.|- ..|++...+++..+.+..
T Consensus 27 Ag-i~l~~TRvIy~~~~~~~sv~i~N~~~~~p~LvQsWv~~~~~~~~~pFivtPP---lfrl~~~~~~~lRI~~~~~~lP 102 (228)
T PRK15188 27 GG-IALGATRVIYPQGSKQTSLPIINSSASNVFLIQSWVANADGSRSTDFIITPP---LFVIQPKKENILRIMYVGPSLP 102 (228)
T ss_pred ce-EEECcEEEEEcCCCceEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCC---eEEECCCCceEEEEEECCCCCC
Confidence 44 56777664 3333 33455665544 32 45567997655444467999998 778887555555444433
Q ss_pred CCceeEEEc
Q 028274 93 DDRKFFLWM 101 (211)
Q Consensus 93 s~~k~FFWm 101 (211)
.++-..||+
T Consensus 103 ~DRESlf~l 111 (228)
T PRK15188 103 TDRESVFYL 111 (228)
T ss_pred CCceEEEEE
Confidence 356789998
No 11
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=25.84 E-value=4.6e+02 Score=23.04 Aligned_cols=78 Identities=18% Similarity=0.304 Sum_probs=44.4
Q ss_pred eceeeEecCCcEEecCCC--cEEEEEeCCCCceEEE-EeeCCCCC-cccceEeeCCceEEEEeccCCCeEEEEEEcC---
Q 028274 20 RAGKMTFDGKKVVPDSRK--GLVRIARGEHGLIHFQ-WLDRTRNV-VEDDQIVFPHEAVFEKVNQASGRVYILKFNT--- 92 (211)
Q Consensus 20 kAGKm~~~g~~V~Pd~rK--G~l~l~~~edgl~hf~-W~~R~t~~-vEddlIlfPgea~F~kV~~~tGRVyvLkF~s--- 92 (211)
.|| ..+++++|.=+..+ ..|.|...++.-+-+| |.+..+.. .+..|++.|- ..|++...+++..+.+..
T Consensus 21 ~A~-v~l~~TRvIy~~~~~~~si~i~N~~~~p~LvQswv~~~~~~~~~~pFivtPP---lfrl~p~~~q~lRI~~~~~~L 96 (229)
T PRK15211 21 MAA-FVLNGTRFIYDEGRKNISFEVTNQADQTYGGQVWIDNTTQGSSTVYMVPAPP---FFKVRPKEKQIIRIMKTDSAL 96 (229)
T ss_pred eEE-EEECceEEEEcCCCceEEEEEEeCCCCcEEEEEEEecCCCCCccCCEEEcCC---eEEECCCCceEEEEEECCCCC
Confidence 366 66788775444433 3445544444434344 98765422 1246888888 778877444333333333
Q ss_pred -CCceeEEEc
Q 028274 93 -DDRKFFLWM 101 (211)
Q Consensus 93 -s~~k~FFWm 101 (211)
.++-..||+
T Consensus 97 P~DRESlf~l 106 (229)
T PRK15211 97 PKDRESLFWL 106 (229)
T ss_pred CCCceEEEEE
Confidence 267789998
No 12
>PF15355 Chisel: Stretch-responsive small skeletal muscle X protein, Chisel
Probab=24.45 E-value=2.7e+02 Score=21.27 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=14.3
Q ss_pred CCCCCHHHHHHHHHhc
Q 028274 173 SGPVKLEDLQRIFSNI 188 (211)
Q Consensus 173 ~~~~~l~~lq~iLs~~ 188 (211)
.+.|+|+.||++-|+|
T Consensus 64 GPavNLsEiqNvKSeL 79 (87)
T PF15355_consen 64 GPAVNLSEIQNVKSEL 79 (87)
T ss_pred CccccHHHHhhhHhhh
Confidence 5789999999999986
No 13
>PF11191 DUF2782: Protein of unknown function (DUF2782); InterPro: IPR021357 This is a bacterial family of proteins whose function is unknown.
Probab=23.66 E-value=1.1e+02 Score=23.39 Aligned_cols=43 Identities=12% Similarity=0.400 Sum_probs=27.6
Q ss_pred ccceEeeCCceEEEEecc--CCCeEEEEEEcCCCceeEEEccCCCchh
Q 028274 63 EDDQIVFPHEAVFEKVNQ--ASGRVYILKFNTDDRKFFLWMQEPKAEE 108 (211)
Q Consensus 63 EddlIlfPgea~F~kV~~--~tGRVyvLkF~ss~~k~FFWmQe~~~~~ 108 (211)
|-+.+|..++- .+|++ -+|++|.+|..-..- .=|+|.+++.+.
T Consensus 38 ~pevti~~~~~--~~ieEyRv~G~l~~IkV~P~~G-~~Yyl~d~dg~g 82 (105)
T PF11191_consen 38 EPEVTIIEDGG--STIEEYRVNGQLYMIKVQPKAG-PPYYLVDPDGDG 82 (105)
T ss_pred CCCEEEEecCC--cEEEEEEECCeEeeEEEEeCCC-CCEEEECCCCCC
Confidence 33444444333 55555 589999999964322 778888887753
No 14
>PF13897 GOLD_2: Golgi-dynamics membrane-trafficking
Probab=22.45 E-value=78 Score=26.28 Aligned_cols=17 Identities=35% Similarity=0.835 Sum_probs=12.0
Q ss_pred eEEEEEEcCC-----CceeEEE
Q 028274 84 RVYILKFNTD-----DRKFFLW 100 (211)
Q Consensus 84 RVyvLkF~ss-----~~k~FFW 100 (211)
-||+|||.+| +++.+|.
T Consensus 111 GvYvLkFDNSYS~~rsK~l~Y~ 132 (136)
T PF13897_consen 111 GVYVLKFDNSYSWFRSKKLYYR 132 (136)
T ss_pred eEEEEEeeCcceeEEeeEEEEE
Confidence 5999999765 4555554
No 15
>PHA02550 32 single-stranded DNA binding protein; Provisional
Probab=22.44 E-value=1e+02 Score=28.70 Aligned_cols=27 Identities=19% Similarity=0.465 Sum_probs=22.7
Q ss_pred ccCCCeEEEEEEcCCCceeEEEccCCCchhhHHHHHHHHHHhcCC
Q 028274 79 NQASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123 (211)
Q Consensus 79 ~~~tGRVyvLkF~ss~~k~FFWmQe~~~~~D~~~~~~vN~~i~~p 123 (211)
+...|+||.+||. +.+..+|+..+|-.
T Consensus 130 PENEGKVF~~rfG------------------kKI~dki~aa~~~~ 156 (304)
T PHA02550 130 PENEGKVFKYRFG------------------KKIMDKITAAINPD 156 (304)
T ss_pred CccCccEEEehhh------------------HHHHHHHHHHhCCC
Confidence 3478999999994 68999999999864
No 16
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=21.87 E-value=3.3e+02 Score=19.92 Aligned_cols=44 Identities=20% Similarity=0.231 Sum_probs=28.1
Q ss_pred ceEEEEecc--CCCeEEEEEEcCCCceeEEEccCCCchhhHHHHHHHHH
Q 028274 72 EAVFEKVNQ--ASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNY 118 (211)
Q Consensus 72 ea~F~kV~~--~tGRVyvLkF~ss~~k~FFWmQe~~~~~D~~~~~~vN~ 118 (211)
.++...++. +.-.||.|+.. ..--|++|-.+.+.=.+++..||.
T Consensus 58 ~~~i~~~~~~~k~~~~F~l~~~---~~~~~~f~a~s~e~~~~Wi~aL~~ 103 (104)
T cd01253 58 GAQCEVASDYTKKKHVFRLRLP---DGAEFLFQAPDEEEMSSWVRALKS 103 (104)
T ss_pred CCEEEecCCcccCceEEEEEec---CCCEEEEECCCHHHHHHHHHHHhc
Confidence 455555544 23356666642 225568999988877788888764
No 17
>PF11625 DUF3253: Protein of unknown function (DUF3253); InterPro: IPR021660 This bacterial family of proteins has no known function. ; PDB: 2NS0_A.
Probab=21.44 E-value=45 Score=25.40 Aligned_cols=25 Identities=40% Similarity=0.728 Sum_probs=14.4
Q ss_pred eceeeEe--cCCcEEecCCCcEEEEEe
Q 028274 20 RAGKMTF--DGKKVVPDSRKGLVRIAR 44 (211)
Q Consensus 20 kAGKm~~--~g~~V~Pd~rKG~l~l~~ 44 (211)
++|++.+ .|+-|.|+..||-++|..
T Consensus 55 ~~G~i~I~qkG~~Vdp~~~rGpiRirl 81 (83)
T PF11625_consen 55 RAGRIEITQKGKPVDPETFRGPIRIRL 81 (83)
T ss_dssp HTTSEEEEETTEE--TTT--S--EEEE
T ss_pred HCCcEEEEECCEecCcccCcCCeEeec
Confidence 4788765 578899999999999854
Done!