Query 028274
Match_columns 211
No_of_seqs 125 out of 204
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 14:37:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028274.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028274hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kr0_A Proteasomal ubiquitin r 100.0 3.9E-50 1.3E-54 372.5 22.6 115 11-125 22-137 (411)
2 2r2y_A Protein ADRM1; proteaso 100.0 4.4E-50 1.5E-54 330.0 14.9 114 11-124 21-135 (153)
3 4b4t_X 26S proteasome regulato 100.0 8.5E-47 2.9E-51 311.4 10.9 112 12-124 3-133 (156)
4 3pp2_A RHO GTPase-activating p 63.3 10 0.00035 28.0 4.7 54 66-121 69-123 (124)
5 2dn6_A KIAA0640 protein; PH do 61.3 30 0.001 24.1 6.7 55 65-123 49-105 (115)
6 1klf_A FIMC chaperone, chapero 55.2 83 0.0028 25.7 9.3 73 25-101 3-85 (205)
7 2ec1_A Nucleoporin 50 kDa; ran 49.8 83 0.0028 23.9 9.4 113 3-119 2-122 (125)
8 2xg5_A PAPD, chaperone protein 42.5 1.4E+02 0.0049 24.5 9.9 73 25-101 3-88 (218)
9 2a1k_A GP32 single stranded DN 42.3 26 0.0009 30.2 4.3 25 81-123 110-134 (233)
10 1upq_A PEPP1; PH domain, phosp 40.3 88 0.003 21.9 6.4 50 73-123 60-111 (123)
11 2kzb_A Autophagy-related prote 39.9 22 0.00075 27.3 3.1 53 30-90 4-58 (118)
12 2co7_B SAFB chaperone, putativ 38.7 1.6E+02 0.0056 24.2 9.9 77 21-101 12-95 (221)
13 1x1g_A Pleckstrin 2; PH domain 37.6 1.1E+02 0.0036 21.7 7.9 40 84-124 88-127 (129)
14 1dro_A Beta-spectrin; cytoskel 37.4 32 0.0011 24.8 3.7 41 82-123 81-121 (122)
15 4djm_A DRAB; chaperone, PILI; 33.3 2.1E+02 0.0073 23.9 9.8 78 20-101 20-105 (239)
16 4ay0_A Chaperone protein CAF1M 30.9 2.2E+02 0.0077 23.4 10.6 76 21-101 12-97 (218)
17 3cxb_B Pleckstrin homology dom 30.0 1.1E+02 0.0039 21.6 5.7 37 84-123 67-103 (112)
18 2p0d_A RHO GTPase-activating p 28.7 1.1E+02 0.0037 22.4 5.5 47 73-122 77-125 (129)
19 2dkp_A Pleckstrin homology dom 26.8 1.6E+02 0.0055 20.6 6.0 50 72-122 69-120 (128)
20 1pls_A Pleckstrin homology dom 25.6 1.3E+02 0.0045 20.7 5.2 36 85-123 68-103 (113)
21 1wjm_A Beta-spectrin III; PH d 23.5 97 0.0033 22.0 4.2 41 82-123 79-119 (123)
22 1l4i_A SFAE protein; periplasm 23.0 3E+02 0.01 22.2 9.5 73 25-101 3-85 (206)
23 2aj7_A Hypothetical protein BH 21.3 85 0.0029 25.3 3.8 38 63-106 28-66 (163)
24 1pfj_A TFIIH basal transcripti 21.2 2.7E+02 0.0093 21.0 6.5 55 38-99 22-77 (108)
25 2ns0_A Hypothetical protein; r 20.4 31 0.0011 25.4 0.9 26 20-45 55-82 (85)
No 1
>2kr0_A Proteasomal ubiquitin receptor ADRM1; proteasome, 19S regulator, protein binding; NMR {Homo sapiens}
Probab=100.00 E-value=3.9e-50 Score=372.45 Aligned_cols=115 Identities=50% Similarity=0.957 Sum_probs=111.3
Q ss_pred CCCceeEEEeceeeEecCCcEEecCCCcEEEEEeCCCCceEEEEeeCCCCCcccceEeeCCceEEEEecc-CCCeEEEEE
Q 028274 11 AMQEILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQ-ASGRVYILK 89 (211)
Q Consensus 11 ~~~~~LieFkAGKm~~~g~~V~Pd~rKG~l~l~~~edgl~hf~W~~R~t~~vEddlIlfPgea~F~kV~~-~tGRVyvLk 89 (211)
.+.++||+||||||+++|++|+||+|||+|||++.+|+|+||||++|+++.+|||+||||+|++|+||++ +|||||+||
T Consensus 22 s~~~~lveFkAGk~~~~g~~V~Pd~rKG~l~l~~~ed~l~hf~W~~R~~~~~Eddlii~P~d~~f~~V~~c~tGRVyvLk 101 (411)
T 2kr0_A 22 ASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFPDDCEFKRVPQCPSGRVYVLK 101 (411)
T ss_dssp SCCSCSEEECEEEEEESSSSEEECCSCEEEEEEECTTSCEEEEEEESSSCCEEEEEEECTTSEEEEECTTCSSSCEEEEE
T ss_pred CCCceeEEEeCceEEecCCEEeecCCCcEEEEEeCCCCcEEEEEecCCCCCcccceEEcCCceEEEECCCCCCCeEEEEE
Confidence 5569999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred EcCCCceeEEEccCCCchhhHHHHHHHHHHhcCCcc
Q 028274 90 FNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRPLV 125 (211)
Q Consensus 90 F~ss~~k~FFWmQe~~~~~D~~~~~~vN~~i~~p~~ 125 (211)
|+++++||||||||++.++|+++|++||++|+++++
T Consensus 102 F~ss~~r~fFWmQe~~~~~D~~~~~~vN~ll~~~~~ 137 (411)
T 2kr0_A 102 FKAGSKRLFFWMQEPKTDQDEEHCRKVNEYLNNPPM 137 (411)
T ss_dssp ETTTCCEEEEEECCSCGGGHHHHHHHHHHHHHSCSC
T ss_pred ecCCCceeEEEecCCCcccHHHHHHHHHHHHhCCcc
Confidence 999999999999999999999999999999998753
No 2
>2r2y_A Protein ADRM1; proteasome, ubiquitin, PH-domain, 19S regulator, receptor, U proteasome-degradation pathway; 1.70A {Mus musculus} PDB: 2z59_A
Probab=100.00 E-value=4.4e-50 Score=330.05 Aligned_cols=114 Identities=50% Similarity=0.944 Sum_probs=107.0
Q ss_pred CCCceeEEEeceeeEecCCcEEecCCCcEEEEEeCCCCceEEEEeeCCCCCcccceEeeCCceEEEEecc-CCCeEEEEE
Q 028274 11 AMQEILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQ-ASGRVYILK 89 (211)
Q Consensus 11 ~~~~~LieFkAGKm~~~g~~V~Pd~rKG~l~l~~~edgl~hf~W~~R~t~~vEddlIlfPgea~F~kV~~-~tGRVyvLk 89 (211)
.+.++||+||||||.++|++|+||+|||+|+|++.+|+|+||||++|+++.+|||+||||||++|++|++ +|||||+||
T Consensus 21 ~~~~~lveFkAGkm~l~g~~V~Pd~rKG~l~l~~~ed~l~hf~W~~R~t~~vEdDlIi~P~d~~F~kV~~c~tGRVyvLk 100 (153)
T 2r2y_A 21 SSTKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGTVEDDLIIFPDDCEFKRVPQCPSGRVYVLK 100 (153)
T ss_dssp ----CCEEEEEEEEEEETTEEEECCSCEEEEEEECTTSCEEEEEEETTTCCEEEEEECCTTSEEEEECTTCTTSCEEEEE
T ss_pred cCCceeEEEeCceEEecCCEEeECCCCEEEEEEECCCCcEEEEEecCCCCCccceEEEcCCCeEEEECCCCCCCeEEEEE
Confidence 6679999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred EcCCCceeEEEccCCCchhhHHHHHHHHHHhcCCc
Q 028274 90 FNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRPL 124 (211)
Q Consensus 90 F~ss~~k~FFWmQe~~~~~D~~~~~~vN~~i~~p~ 124 (211)
|+++++||||||||+++++|+++|++||++|++|+
T Consensus 101 F~ss~~r~FFWmQe~~~~~D~~~~~kvN~lL~~p~ 135 (153)
T 2r2y_A 101 FKAGSKRLFFWMQEPKTDQDEEHCRKVNECLNNPP 135 (153)
T ss_dssp ETTTCCEEEEEECSSSSTTHHHHHHHHHHHHHC--
T ss_pred ecCCCceEEEEecCCCcccHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999986
No 3
>4b4t_X 26S proteasome regulatory subunit RPN13; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} PDB: 2z4d_A
Probab=100.00 E-value=8.5e-47 Score=311.39 Aligned_cols=112 Identities=25% Similarity=0.567 Sum_probs=99.5
Q ss_pred CCceeEEEeceeeEecC--CcEEecCCCcEEEEEeCCC---CceEEEEeeCCCCCc----ccceEeeCCceEEEEecc-C
Q 028274 12 MQEILLEFRAGKMTFDG--KKVVPDSRKGLVRIARGEH---GLIHFQWLDRTRNVV----EDDQIVFPHEAVFEKVNQ-A 81 (211)
Q Consensus 12 ~~~~LieFkAGKm~~~g--~~V~Pd~rKG~l~l~~~ed---gl~hf~W~~R~t~~v----EddlIlfPgea~F~kV~~-~ 81 (211)
+..+||+||||||.+++ ++|+|++|||+|||++++| ||+||||++|+++.. |+|+||||||++|++|++ +
T Consensus 3 ~s~~li~FkAGk~~~~~~tk~v~Pd~rKG~i~l~~~~d~~~~l~hf~W~~R~~~~~~~~~~~dlii~P~d~~f~~v~~c~ 82 (156)
T 4b4t_X 3 MSSTVIKFRAGVCEYNEDSRLCTPIPVQGEIEIKPNEEEELGFWDFEWRPTEKPVGRELDPISLILIPGETMWVPIKSSK 82 (156)
T ss_dssp ----CEEECEEEEEEETTTTEEEECSCCCBEEEESCSSSSSCCCEEECBSCSCCSSCCCCCCEECCCTTTSEEECCSSCS
T ss_pred CCceeEEEeCceEEEcCCccEEeecCCceEEEEEECCCCCcceEEEEEecCCCCCcCCCCccceEEcCCceEEEEcCCCC
Confidence 45689999999999986 6899999999999999877 699999999997643 459999999999999999 9
Q ss_pred CCeEEEEEEcCCCceeEEEccCCCc---------hhhHHHHHHHHHHhcCCc
Q 028274 82 SGRVYILKFNTDDRKFFLWMQEPKA---------EEDSQLCNSVNYFINRPL 124 (211)
Q Consensus 82 tGRVyvLkF~ss~~k~FFWmQe~~~---------~~D~~~~~~vN~~i~~p~ 124 (211)
|||||+||| +|+|||||||||+++ ++|+++|++||++||++.
T Consensus 83 tGRVyvLkF-ss~~r~fFWmQe~~~~~~~~~~~s~kD~~~~~~vn~lL~~~~ 133 (156)
T 4b4t_X 83 SGRIFALVF-SSNERYFFWLQEKNSGNLPLNELSAKDKEIYNKMIGVLNNSS 133 (156)
T ss_dssp SCCEEEEEC-SSSCCEEEEECSSCSSSSSSCCCSSSSHHHHHHHHHHHHCC-
T ss_pred CcEEEEEEe-cCCCcEEEEeecCCccCCcccccchhHHHHHHHHHHHhcCCc
Confidence 999999999 678999999999986 679999999999999986
No 4
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Probab=63.26 E-value=10 Score=28.01 Aligned_cols=54 Identities=17% Similarity=0.174 Sum_probs=33.9
Q ss_pred eEeeCCceEEEEec-cCCCeEEEEEEcCCCceeEEEccCCCchhhHHHHHHHHHHhc
Q 028274 66 QIVFPHEAVFEKVN-QASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFIN 121 (211)
Q Consensus 66 lIlfPgea~F~kV~-~~tGRVyvLkF~ss~~k~FFWmQe~~~~~D~~~~~~vN~~i~ 121 (211)
.|-..+ +...... ..+.|=++++....+.+.|+ +|-.+.+.-.+++..||..|+
T Consensus 69 ~i~L~~-a~v~~~~~d~~krk~vF~l~t~~~~~yl-fqA~s~~e~~~Wi~aI~~aI~ 123 (124)
T 3pp2_A 69 TVELRG-ATLSWAPKDKSSRKNVLELRSRDGSEYL-IQHDSEAIISTWHKAIAQGIQ 123 (124)
T ss_dssp EEECTT-CEEEECCGGGCSSSSEEEEECTTSCEEE-EECSCHHHHHHHHHHHHHHHC
T ss_pred eEEcCC-CEEEecccccCCCceEEEEECCCCCEEE-EECCCHHHHHHHHHHHHHHHh
Confidence 344444 6566653 33444444554444433333 899998888899999999985
No 5
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.31 E-value=30 Score=24.05 Aligned_cols=55 Identities=11% Similarity=0.297 Sum_probs=34.2
Q ss_pred ceEeeCCceEEEEeccCCCe--EEEEEEcCCCceeEEEccCCCchhhHHHHHHHHHHhcCC
Q 028274 65 DQIVFPHEAVFEKVNQASGR--VYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123 (211)
Q Consensus 65 dlIlfPgea~F~kV~~~tGR--VyvLkF~ss~~k~FFWmQe~~~~~D~~~~~~vN~~i~~p 123 (211)
..|-+.+.+....++..+++ +|.+. ..++. |.||-.+.+.=.+++..|+.++...
T Consensus 49 g~i~L~~~~~v~~~~~~~~~~~~F~i~--~~~r~--~~l~a~s~~e~~~Wi~ai~~~~~~~ 105 (115)
T 2dn6_A 49 GDILLDENCCVESLPDKDGKKCLFLVK--CFDKT--FEISASDKKKKQEWIQAIHSTIHLL 105 (115)
T ss_dssp EEECCCTTCEEEEECCCTTCCSEEEEE--CSSCE--EEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred cEEEecCcEEEEECCCCCCCeeEEEEE--eCCCE--EEEEcCCHHHHHHHHHHHHHHHHHH
Confidence 33444454555556544454 55554 34454 4457777776679999999999764
No 6
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C
Probab=55.20 E-value=83 Score=25.73 Aligned_cols=73 Identities=16% Similarity=0.389 Sum_probs=45.2
Q ss_pred EecCCcEEecC--CCcEEEEEeCCCC---ceEEEEeeCCCCCcccceEeeCCceEEEEeccCCCeEEEEEE-cC----CC
Q 028274 25 TFDGKKVVPDS--RKGLVRIARGEHG---LIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQASGRVYILKF-NT----DD 94 (211)
Q Consensus 25 ~~~g~~V~Pd~--rKG~l~l~~~edg---l~hf~W~~R~t~~vEddlIlfPgea~F~kV~~~tGRVyvLkF-~s----s~ 94 (211)
.+++++|.=.. +-..|.|...++. |++ .|.+...+.....|++.|- +.|++...+.+..+.+ .. .+
T Consensus 3 ~l~~TRvIy~~~~k~~sl~l~N~~~~~p~LvQ-sWi~~~~~~~~~pfivtPP---l~rl~p~~~q~lRI~~~~~~~lP~D 78 (205)
T 1klf_A 3 ALGATRVIYPAGQKQVQLAVTNNDENSTYLIQ-SWVENADGVKDGRFIVTPP---LFAMKGKKENTLRILDATNNQLPQD 78 (205)
T ss_dssp EESCSEEEEETTCSEEEEEEEECCSSCCEEEE-EEEEETTSCCCSSEEEESS---EEEECSSEEEEEEEEECSCSCSCSS
T ss_pred EecceEEEEeCCCcEEEEEEEcCCCCCcEEEE-EEEecCCCCccCCEEEcCC---eEEECCCCceEEEEEecCCCCCCCC
Confidence 45676643333 3445566555444 555 4987655545678999998 7788874555555545 33 25
Q ss_pred ceeEEEc
Q 028274 95 RKFFLWM 101 (211)
Q Consensus 95 ~k~FFWm 101 (211)
+-..||+
T Consensus 79 rEslf~l 85 (205)
T 1klf_A 79 RESLFWM 85 (205)
T ss_dssp SCEEEEE
T ss_pred ceEEEEE
Confidence 6789997
No 7
>2ec1_A Nucleoporin 50 kDa; ranbp domain, nuclear pore-associated protein 60 kDa-like, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.84 E-value=83 Score=23.91 Aligned_cols=113 Identities=9% Similarity=0.107 Sum_probs=61.0
Q ss_pred CCCCCcCCCCCceeEEEeceeeEecCCcEEecCCCcEEEEEeCCCCceEEEEeeCCC-CCcccceEeeCCceEEEEeccC
Q 028274 3 SSSTAASPAMQEILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTR-NVVEDDQIVFPHEAVFEKVNQA 81 (211)
Q Consensus 3 ~~~~~~~~~~~~~LieFkAGKm~~~g~~V~Pd~rKG~l~l~~~edgl~hf~W~~R~t-~~vEddlIlfPgea~F~kV~~~ 81 (211)
||-...=.-....+++.||=-..++++. =-+.--|.|+|.+..++-.++.=+...+ +.+=.+.+|.|+ ..+++. .
T Consensus 2 ~s~~~tgEE~E~~lf~~raKLf~~~~~~-WkERGvG~lki~~~k~~k~RllmR~d~~~~kv~lN~~i~~~-m~~~~~-g- 77 (125)
T 2ec1_A 2 SSGSSGEVKEEDAFYSKKCKLFYKKDNE-FKEKGIGTLHLKPTANQKTQLLVRADTNLGNILLNVLIPPN-MPCTRT-G- 77 (125)
T ss_dssp ------CCCCCSCSEEEEEEEEEECSSS-EEEEEEEEEEEEECSSSSEEEEEEESSSSCCBSCCEECCSS-CCEECC-T-
T ss_pred CCCCcCCccCceeEEEEeeEEEEecCCC-cccccEEEEEeeecCCCcEEEEEEecCCCCEEEEeeEEcCC-CeEEec-C-
Confidence 3333333445667888888444444321 1233457788877667777766666554 567778888876 556554 2
Q ss_pred CCeEEEEEEcC---CCc----eeEEEccCCCchhhHHHHHHHHHH
Q 028274 82 SGRVYILKFNT---DDR----KFFLWMQEPKAEEDSQLCNSVNYF 119 (211)
Q Consensus 82 tGRVyvLkF~s---s~~----k~FFWmQe~~~~~D~~~~~~vN~~ 119 (211)
..++.++.... ++. ..-|=++=++++.=.++.+.|+++
T Consensus 78 ~~~~~~~~~~~~~~d~~~~~~~~~~~lrfk~~e~a~~f~~~~~e~ 122 (125)
T 2ec1_A 78 KNNVLIVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHKILLEK 122 (125)
T ss_dssp TTEEEEEECCSSCSCSSSSSSCEEEEEECSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEccCCcccCCCCCceEEEEEEECCHHHHHHHHHHHHHh
Confidence 23444443322 121 344555556666556777777764
No 8
>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A
Probab=42.52 E-value=1.4e+02 Score=24.53 Aligned_cols=73 Identities=15% Similarity=0.363 Sum_probs=44.2
Q ss_pred EecCCcEEecC--CCcEEEEEeCCCC---ceEEEEeeCCCCC-c-ccceEeeCCceEEEEeccCCCeEEEEEEcC-----
Q 028274 25 TFDGKKVVPDS--RKGLVRIARGEHG---LIHFQWLDRTRNV-V-EDDQIVFPHEAVFEKVNQASGRVYILKFNT----- 92 (211)
Q Consensus 25 ~~~g~~V~Pd~--rKG~l~l~~~edg---l~hf~W~~R~t~~-v-EddlIlfPgea~F~kV~~~tGRVyvLkF~s----- 92 (211)
.+++++|.=.. +-..|.|...++. |++ .|.+...+. . ...|++.|- +.|++...+.+..+.+..
T Consensus 3 ~l~~TRvIy~~~~k~~sl~l~N~~~~~p~LvQ-sWi~~~~~~~~~~~pfivtPP---l~rl~p~~~q~lRI~~~~~~~~l 78 (218)
T 2xg5_A 3 SLDRTRAVFDGSEKSMTLDISNDNKQLPYLAQ-AWIENENQEKIITGPVIATPP---VQRLEPGAKSMVRLSTTPDISKL 78 (218)
T ss_dssp EESCSEEEEETTSSEEEEEEEECCSSSCEEEE-EEEECTTSCEECSSSEEEECS---EEEECTTCEEEEEEEECGGGGGS
T ss_pred EeCceEEEEeCCCCEEEEEEEcCCCCCcEEEE-EEEecCCCCccccCCEEEcCC---eEEECCCCceEEEEEecCCCCCC
Confidence 45666643333 3445566554444 444 498765432 2 467899988 778887555555555543
Q ss_pred -CCceeEEEc
Q 028274 93 -DDRKFFLWM 101 (211)
Q Consensus 93 -s~~k~FFWm 101 (211)
.++-..||+
T Consensus 79 P~DrESlf~l 88 (218)
T 2xg5_A 79 PQDRESLFYF 88 (218)
T ss_dssp CSSSCEEEEE
T ss_pred CCCceEEEEE
Confidence 357789997
No 9
>2a1k_A GP32 single stranded DNA binding protein; Zn2+ binding subdomain, 5-stranded beta-sheet, OB fold; 2.00A {Enterobacteria phage RB69} SCOP: b.40.4.7 PDB: 2atq_B* 1gpc_A
Probab=42.26 E-value=26 Score=30.19 Aligned_cols=25 Identities=20% Similarity=0.517 Sum_probs=21.6
Q ss_pred CCCeEEEEEEcCCCceeEEEccCCCchhhHHHHHHHHHHhcCC
Q 028274 81 ASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123 (211)
Q Consensus 81 ~tGRVyvLkF~ss~~k~FFWmQe~~~~~D~~~~~~vN~~i~~p 123 (211)
..|+||++||. ..+.++|+.+++-+
T Consensus 110 NEGKVFlyrFG------------------kKI~dKI~aa~~~~ 134 (233)
T 2a1k_A 110 NEGKVFKYRFG------------------KKIWDKINAMIAVD 134 (233)
T ss_dssp GTTCEEEEEEC------------------HHHHHHHHHHHSCC
T ss_pred cCccEEEehhh------------------HHHHHHHHHHhCCC
Confidence 78999999994 68999999999543
No 10
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Probab=40.33 E-value=88 Score=21.87 Aligned_cols=50 Identities=6% Similarity=0.004 Sum_probs=32.5
Q ss_pred eEEEEecc--CCCeEEEEEEcCCCceeEEEccCCCchhhHHHHHHHHHHhcCC
Q 028274 73 AVFEKVNQ--ASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123 (211)
Q Consensus 73 a~F~kV~~--~tGRVyvLkF~ss~~k~FFWmQe~~~~~D~~~~~~vN~~i~~p 123 (211)
++...+.. ..++-|+++..+.+.+. |.|+-.+.+.=.+++..|+.++...
T Consensus 60 ~~v~~~~~~~~~~~~~~f~i~~~~~r~-~~l~a~s~~e~~~Wi~al~~a~~~~ 111 (123)
T 1upq_A 60 YNIRPDGPGAPRGRRFTFTAEHPGMRT-YVLAADTLEDLRGWLRALGRASRAE 111 (123)
T ss_dssp CEEEECCSSCTTSSSSEEEEECTTSCC-EEEECSSHHHHHHHHHHHHHHHC--
T ss_pred CEEEECCCCccCCCcEEEEEECCCCeE-EEEECCCHHHHHHHHHHHHHHHhcc
Confidence 45555543 45677777765555333 3377777776679999999999864
No 11
>2kzb_A Autophagy-related protein 19; selective autophagy, ATG19, alpha-mannosidase, protein trans; NMR {Saccharomyces cerevisiae}
Probab=39.86 E-value=22 Score=27.31 Aligned_cols=53 Identities=15% Similarity=0.244 Sum_probs=31.9
Q ss_pred cEEecC-CCcEEEEEeCCCCceEEEEeeCCCCCcccceEeeCCceEEEEecc-CCCeEEEEEE
Q 028274 30 KVVPDS-RKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQ-ASGRVYILKF 90 (211)
Q Consensus 30 ~V~Pd~-rKG~l~l~~~edgl~hf~W~~R~t~~vEddlIlfPgea~F~kV~~-~tGRVyvLkF 90 (211)
+|+|-. +-=.|.+.. .|+++||+-.+.+. +++||+++|+--.. .---|+..|.
T Consensus 4 ~~~~pn~~sL~Itvs~-rDnsL~F~lyNntn-------~~lpGnCtl~fs~~g~~ptv~si~m 58 (118)
T 2kzb_A 4 MVEPPNERSLQITMNQ-RDNSLYFQLFNNTN-------SVLAGNCKLKFTDAGDKPTTQIIDM 58 (118)
T ss_dssp -CCCSSCCCEEEEEEE-ETTEEEEEEEECSS-------SCCCSSCEECCCSSSSSCCCCCEEC
T ss_pred cccCCCCccEEEEEec-CCCeEEEEEecCCc-------eeccCccEEEEecCCCCceEEEEec
Confidence 444433 333344443 68899999998765 56899999987543 1123555543
No 12
>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B
Probab=38.75 E-value=1.6e+02 Score=24.18 Aligned_cols=77 Identities=8% Similarity=0.184 Sum_probs=47.0
Q ss_pred ceeeEecCCcEE-e-cCCCcEEEEEeCCCC-ceEEEEeeCCCCCcccceEeeCCceEEEEeccCCCeEEEEEEcC----C
Q 028274 21 AGKMTFDGKKVV-P-DSRKGLVRIARGEHG-LIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQASGRVYILKFNT----D 93 (211)
Q Consensus 21 AGKm~~~g~~V~-P-d~rKG~l~l~~~edg-l~hf~W~~R~t~~vEddlIlfPgea~F~kV~~~tGRVyvLkF~s----s 93 (211)
|| +.+++++|. + +.+-..|.|...++. .+-=.|.+...+.....|++.|- +.|++...+.+..+.+.. .
T Consensus 12 A~-v~i~~TRvIy~~~~k~~sl~l~N~~~~p~LvQsWv~~~~~~~~~pfivtPP---l~rl~p~~~q~lRI~~~~~~lP~ 87 (221)
T 2co7_B 12 FS-VKLGATRVIYHAGTAGATLSVSNPQNYPILVQSSVKAADKSSPAPFLVMPP---LFRLEANQQSQLRIVRTGGDMPT 87 (221)
T ss_dssp EE-CEESCSEEEEETTSSCEEEEEECCSSSCEEEEEEEEETTSSSBCSEEEESS---EEEECTTCEEEEEEEECCCCCCS
T ss_pred EE-EEEcceEEEEcCCCCEEEEEEEcCCCCcEEEEEEEecCCCCccCCEEEeCC---EEEECCCCceEEEEEECCCCCCC
Confidence 44 557776653 3 334445666544332 23335987655545678999998 778887555555555544 2
Q ss_pred CceeEEEc
Q 028274 94 DRKFFLWM 101 (211)
Q Consensus 94 ~~k~FFWm 101 (211)
++-..||+
T Consensus 88 DrEslf~l 95 (221)
T 2co7_B 88 DRETLQWV 95 (221)
T ss_dssp SSCEEEEE
T ss_pred CceEEEEE
Confidence 56789997
No 13
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=37.56 E-value=1.1e+02 Score=21.66 Aligned_cols=40 Identities=15% Similarity=0.283 Sum_probs=26.8
Q ss_pred eEEEEEEcCCCceeEEEccCCCchhhHHHHHHHHHHhcCCc
Q 028274 84 RVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRPL 124 (211)
Q Consensus 84 RVyvLkF~ss~~k~FFWmQe~~~~~D~~~~~~vN~~i~~p~ 124 (211)
|-|+++....+++ -|.||-.+.+.=.+++..|+.+++.+.
T Consensus 88 ~~~~F~I~~~~~r-~~~l~a~s~~e~~~Wi~al~~~~~~~~ 127 (129)
T 1x1g_A 88 QGNLFKVITKDDT-HYYIQASSKAERAEWIEAIKKLTSGPS 127 (129)
T ss_dssp CSSCEEECCTTCC-CEEECCSSHHHHHHHHHHHHHHSSSSC
T ss_pred CCceEEEEcCCCC-EEEEEcCCHHHHHHHHHHHHHHHhccc
Confidence 3344444344433 244777777767799999999998874
No 14
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1
Probab=37.39 E-value=32 Score=24.76 Aligned_cols=41 Identities=15% Similarity=0.185 Sum_probs=27.0
Q ss_pred CCeEEEEEEcCCCceeEEEccCCCchhhHHHHHHHHHHhcCC
Q 028274 82 SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123 (211)
Q Consensus 82 tGRVyvLkF~ss~~k~FFWmQe~~~~~D~~~~~~vN~~i~~p 123 (211)
+.|-++++....+.+. |-+|-.+.+.=.+++..||..|+.+
T Consensus 81 ~kr~~~F~l~t~~~~~-~lfqA~s~~e~~~Wi~ai~~~i~~~ 121 (122)
T 1dro_A 81 TKKKHVLRVKLANGAL-FLLQAHDDTEMSQWVTSLKAQSDST 121 (122)
T ss_dssp SSSTTEEEEECSSSCE-EEEECSSSHHHHHHHHHHHHHHTCC
T ss_pred CCCCeEEEEEEcCCCE-EEEECCCHHHHHHHHHHHHHHHHhc
Confidence 3444444443333332 2379988888889999999999764
No 15
>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli}
Probab=33.31 E-value=2.1e+02 Score=23.91 Aligned_cols=78 Identities=12% Similarity=0.176 Sum_probs=45.8
Q ss_pred eceeeEecCCcEEec-C-CCcEEEEEeCCCC--ceEEEEeeCCCCCcccceEeeCCceEEEEeccCCCeEEEEEEcC---
Q 028274 20 RAGKMTFDGKKVVPD-S-RKGLVRIARGEHG--LIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQASGRVYILKFNT--- 92 (211)
Q Consensus 20 kAGKm~~~g~~V~Pd-~-rKG~l~l~~~edg--l~hf~W~~R~t~~vEddlIlfPgea~F~kV~~~tGRVyvLkF~s--- 92 (211)
+|.=+.+++++|.=. . +-..|.|...++. |++ .|.+...+.....||+.|- +.|++...+....+.+..
T Consensus 20 ~aa~v~l~~TRvIy~~~~k~~sl~l~N~~~~P~LvQ-sWv~~~~~~~~~pfivtPP---lfRlep~~~q~lRIi~~~~~L 95 (239)
T 4djm_A 20 RVFSLHLGATRVVYNPASSGETLTVINDQDYPMLVQ-SEVLSEDQKSPAPFVVTPP---LFRLDGQQSSRLRIVRTGGEF 95 (239)
T ss_dssp CEECCEESCSEEEECTTSSCEEEEEEECSSSCEEEE-EEEECTTSSSBCSEEEESS---EEEECTTEEEEEEEEECSCCC
T ss_pred eEEeEEEcceEEEEeCCCCEEEEEEEeCCCCcEEEE-EEEEcCCCCccCCEEEcCC---eEEECCCCceEEEEEECCCCC
Confidence 344456788775433 3 3345566554432 333 4988655444567999988 778877444443333433
Q ss_pred -CCceeEEEc
Q 028274 93 -DDRKFFLWM 101 (211)
Q Consensus 93 -s~~k~FFWm 101 (211)
.++-..||+
T Consensus 96 P~DRESlf~l 105 (239)
T 4djm_A 96 PPDRESLQWI 105 (239)
T ss_dssp CSSSCEEEEE
T ss_pred CCCceEEEEE
Confidence 357789997
No 16
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A
Probab=30.93 E-value=2.2e+02 Score=23.41 Aligned_cols=76 Identities=17% Similarity=0.316 Sum_probs=44.5
Q ss_pred ceeeEecCCcE-EecCCCc-EEEEEeCCCC--ceEEEEeeCCCC--CcccceEeeCCceEEEEeccCCCeEEEEEEcC--
Q 028274 21 AGKMTFDGKKV-VPDSRKG-LVRIARGEHG--LIHFQWLDRTRN--VVEDDQIVFPHEAVFEKVNQASGRVYILKFNT-- 92 (211)
Q Consensus 21 AGKm~~~g~~V-~Pd~rKG-~l~l~~~edg--l~hf~W~~R~t~--~vEddlIlfPgea~F~kV~~~tGRVyvLkF~s-- 92 (211)
|| +.++|++| -|...|. .|.|...++. |++ .|.+...+ ..+..||+.|- +.|++...+.+..+.+..
T Consensus 12 ag-v~l~~TRvIy~~~~k~~sl~l~N~~~~p~LvQ-swv~~~~~~~~~~~pFivtPP---l~Rl~p~~~q~lRI~~~~~~ 86 (218)
T 4ay0_A 12 YG-VTIGESRIIYPLDAAGVMVSVKNTQDYPVLIQ-SRIYDENKEKESEDPFVVTPP---LFRLDAKQQNSLRIAQAGGV 86 (218)
T ss_dssp -C-EEESCCEEEEETTCSCEEEEEECCSSSCEEEE-EEEECTTSCCCSSCSEEEESS---EEEECTTCEEEEEEEECSCC
T ss_pred ee-EEECceEEEECCCCcEEEEEEEcCCCCCEEEE-EEEecCCCCccccCCEEECCC---eEEeCCCCceEEEEEecCCC
Confidence 56 45788775 4444443 3555443332 333 58765443 23456999988 788887555555555543
Q ss_pred --CCceeEEEc
Q 028274 93 --DDRKFFLWM 101 (211)
Q Consensus 93 --s~~k~FFWm 101 (211)
.++-..||+
T Consensus 87 LP~DRESlf~l 97 (218)
T 4ay0_A 87 FPRDKESLKWL 97 (218)
T ss_dssp CCSSSCEEEEE
T ss_pred CCcCcEEEEEE
Confidence 256789996
No 17
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B
Probab=30.02 E-value=1.1e+02 Score=21.65 Aligned_cols=37 Identities=8% Similarity=0.136 Sum_probs=28.5
Q ss_pred eEEEEEEcCCCceeEEEccCCCchhhHHHHHHHHHHhcCC
Q 028274 84 RVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123 (211)
Q Consensus 84 RVyvLkF~ss~~k~FFWmQe~~~~~D~~~~~~vN~~i~~p 123 (211)
.||.|.+. +++ -|.+|-.+.+.-.+++..|+..+...
T Consensus 67 ~~F~l~~~-~~~--~y~f~A~s~ee~~~Wi~ai~~~~~~~ 103 (112)
T 3cxb_B 67 HAFQVILS-DRP--CLELSAESEAEMAEWMQHLCQAVSKG 103 (112)
T ss_dssp TEEEEEET-TSC--CEEEECSSHHHHHHHHHHHHHHHTCC
T ss_pred eEEEEEcC-CCC--EEEEEcCCHHHHHHHHHHHHHHhhcc
Confidence 38888774 233 35589999988889999999999874
No 18
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Probab=28.67 E-value=1.1e+02 Score=22.40 Aligned_cols=47 Identities=21% Similarity=0.215 Sum_probs=30.3
Q ss_pred eEEEEeccCCCe--EEEEEEcCCCceeEEEccCCCchhhHHHHHHHHHHhcC
Q 028274 73 AVFEKVNQASGR--VYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINR 122 (211)
Q Consensus 73 a~F~kV~~~tGR--VyvLkF~ss~~k~FFWmQe~~~~~D~~~~~~vN~~i~~ 122 (211)
+........+.| ||.|+ ..+.+.| -+|-.+.+.=.+++..|+..|..
T Consensus 77 ~~v~~~~~~~kr~~~F~l~--t~~~~~y-l~qA~s~~e~~~Wi~aI~~~i~~ 125 (129)
T 2p0d_A 77 AALAHGRHLSSRRNVLHIR--TIPGHEF-LLQSDHETELRAWHRALRTVIER 125 (129)
T ss_dssp CEEEECTTSCSSSSEEEEE--CTTSCEE-EEECSCHHHHHHHHHHHHHHHHH
T ss_pred cEEEECCCCCCCCcEEEEE--cCCCCEE-EEECCCHHHHHHHHHHHHHHHHh
Confidence 444444334455 66655 3333333 28999888778999999999864
No 19
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}
Probab=26.84 E-value=1.6e+02 Score=20.56 Aligned_cols=50 Identities=8% Similarity=0.001 Sum_probs=30.9
Q ss_pred ceEEEEecc--CCCeEEEEEEcCCCceeEEEccCCCchhhHHHHHHHHHHhcC
Q 028274 72 EAVFEKVNQ--ASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINR 122 (211)
Q Consensus 72 ea~F~kV~~--~tGRVyvLkF~ss~~k~FFWmQe~~~~~D~~~~~~vN~~i~~ 122 (211)
.++...+.. ..+|-|++.....+.+. |.++-.+.+.=.+++..|+.++..
T Consensus 69 ~~~v~~~~~~~~~~~~~~F~i~~~~~r~-~~l~a~s~~e~~~Wi~al~~a~~~ 120 (128)
T 2dkp_A 69 SFQIALLTSEDHINRKYAFKAAHPNMRT-YYFCTDTGKEMELWMKAMLDAALV 120 (128)
T ss_dssp GSEEEECCGGGCCSSCSEEEEECSSSCC-EEEECSSHHHHHHHHHHHHHHHSC
T ss_pred ceEEEEcCCcccCCCCeEEEEEcCCCCE-EEEEcCCHHHHHHHHHHHHHHHhc
Confidence 345555543 34555555554444333 347777777667999999988764
No 20
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=25.58 E-value=1.3e+02 Score=20.69 Aligned_cols=36 Identities=17% Similarity=0.166 Sum_probs=23.8
Q ss_pred EEEEEEcCCCceeEEEccCCCchhhHHHHHHHHHHhcCC
Q 028274 85 VYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123 (211)
Q Consensus 85 VyvLkF~ss~~k~FFWmQe~~~~~D~~~~~~vN~~i~~p 123 (211)
+|.|.. .+.+. |.+|-.+.+.=.+++..|+.++...
T Consensus 68 ~F~i~~--~~~r~-~~l~a~s~~e~~~Wi~ai~~~~~~~ 103 (113)
T 1pls_A 68 VFKITT--TKQQD-HFFQAAFLEERDAWVRDINKAIKCI 103 (113)
T ss_dssp EEEEEE--TTTEE-EEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEc--CCCCE-EEEECCCHHHHHHHHHHHHHHHhcc
Confidence 555543 33333 3367777766679999999999764
No 21
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=23.49 E-value=97 Score=21.96 Aligned_cols=41 Identities=24% Similarity=0.173 Sum_probs=26.2
Q ss_pred CCeEEEEEEcCCCceeEEEccCCCchhhHHHHHHHHHHhcCC
Q 028274 82 SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123 (211)
Q Consensus 82 tGRVyvLkF~ss~~k~FFWmQe~~~~~D~~~~~~vN~~i~~p 123 (211)
..|-|+++....+.+. |-+|-.+.+.=.+++..|+.+++..
T Consensus 79 ~~r~~~F~i~~~~~~~-~~f~A~s~~e~~~Wi~ai~~~~~~~ 119 (123)
T 1wjm_A 79 RKRKHVFKLGLQDGKE-YLFQAKDEAEMSSWLRVVNAAIASG 119 (123)
T ss_dssp SSCSSEEEEECSSSCE-EEEECSSHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCEEEEEEcCCcE-EEEECCCHHHHHHHHHHHHHHHhcc
Confidence 4443444433333232 2378888877789999999999754
No 22
>1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1
Probab=23.03 E-value=3e+02 Score=22.24 Aligned_cols=73 Identities=11% Similarity=0.370 Sum_probs=43.1
Q ss_pred EecCCcEEecC--CCcEEEEEeCCC-C--ceEEEEeeCCCCCcccceEeeCCceEEEEeccCCCeEEEEE-EcC----CC
Q 028274 25 TFDGKKVVPDS--RKGLVRIARGEH-G--LIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQASGRVYILK-FNT----DD 94 (211)
Q Consensus 25 ~~~g~~V~Pd~--rKG~l~l~~~ed-g--l~hf~W~~R~t~~vEddlIlfPgea~F~kV~~~tGRVyvLk-F~s----s~ 94 (211)
.+++++|.=.. +-..|.|...++ . |++ .|.+...+.....|++.|- +.|++...+.+..+. +.. .+
T Consensus 3 ~l~~TRvIy~~~~k~~sl~l~N~~~~~p~LvQ-sWv~~~~~~~~~pfivtPP---l~rl~p~~~q~lRI~~~~~~~lP~D 78 (206)
T 1l4i_A 3 ALGATRVIYPEGQKQVQLAVTNNDDKSSYLIQ-SWIENAEGKKDARFVITPP---LFSMQGKKENTLRIIDATNGQMPED 78 (206)
T ss_dssp EESCSEEEEETTCSEEEEEEEECCTTCEEEEE-EEEEETTSCBCSSEEEESS---EEEEESSEEEEEEEEECCTTCSCSS
T ss_pred EeCceEEEEeCCCcEEEEEEEeCCCCccEEEE-EEEecCCCCccCCEEEcCC---eEEECCCCceEEEEEecCCCCCCCC
Confidence 45676653333 334555555433 2 444 4887655555678999998 778877445454454 322 25
Q ss_pred ceeEEEc
Q 028274 95 RKFFLWM 101 (211)
Q Consensus 95 ~k~FFWm 101 (211)
+-..||+
T Consensus 79 rEslf~l 85 (206)
T 1l4i_A 79 RESLFWV 85 (206)
T ss_dssp SCEEEEE
T ss_pred ceEEEEE
Confidence 6689997
No 23
>2aj7_A Hypothetical protein BH3618; BH3618-like fold, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.67A {Bacillus halodurans} SCOP: b.158.1.1
Probab=21.31 E-value=85 Score=25.27 Aligned_cols=38 Identities=18% Similarity=0.220 Sum_probs=21.9
Q ss_pred ccceEeeCCceEEEEecc-CCCeEEEEEEcCCCceeEEEccCCCc
Q 028274 63 EDDQIVFPHEAVFEKVNQ-ASGRVYILKFNTDDRKFFLWMQEPKA 106 (211)
Q Consensus 63 EddlIlfPgea~F~kV~~-~tGRVyvLkF~ss~~k~FFWmQe~~~ 106 (211)
|+++|-||.-. .. .+=|=|+|... ....-|||||+-+.
T Consensus 28 e~~ii~F~~GI-----pGFE~~k~F~L~~~-~~~~pf~~LQS~dd 66 (163)
T 2aj7_A 28 EDRLIAFDQGI-----PAFEDEKEFVLLPF-AAGTPYYTLQSTKT 66 (163)
T ss_dssp GGGEEECTTCB-----TTBTTCCEEEEEES-STTSCEEEEEESSC
T ss_pred ccCEEEccCCC-----cCCccceEEEEEec-CCCCcEEEEEecCC
Confidence 45666665532 22 33355555542 34569999997554
No 24
>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B
Probab=21.17 E-value=2.7e+02 Score=21.01 Aligned_cols=55 Identities=5% Similarity=0.115 Sum_probs=30.9
Q ss_pred cEEEEEeCCCCceEEEEeeCCCCCcccceEeeCCceEEEEecc-CCCeEEEEEEcCCCceeEE
Q 028274 38 GLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQ-ASGRVYILKFNTDDRKFFL 99 (211)
Q Consensus 38 G~l~l~~~edgl~hf~W~~R~t~~vEddlIlfPgea~F~kV~~-~tGRVyvLkF~ss~~k~FF 99 (211)
|.|+|.. | |+.|.+...+ +-.+.+.-.+++=.++.+ ..-+|-+=-|..++.-|-|
T Consensus 22 GtL~l~~--d---~i~W~p~~~~--~~~vs~~~~~I~~qq~SP~~k~KVqLqi~l~~~~~~~F 77 (108)
T 1pfj_A 22 GALYLMA--E---RIAWAPEGKD--RFTISHMYADIKCQKISPEGKAKIQLQLVLHAGDTTNF 77 (108)
T ss_dssp CEEEEET--T---EEEEECSSSS--SCSEEEETTTCCCEEECCSSSSSCEEEEECSSSCEEEE
T ss_pred ceEEEEc--c---eEEEccCCCC--CceEEEehhhhhcceeCCCCCccEEEEEEEeCCCceEE
Confidence 9999976 3 9999996553 334444445566666655 3334443333333333333
No 25
>2ns0_A Hypothetical protein; rhodococcus structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} SCOP: a.4.5.76
Probab=20.41 E-value=31 Score=25.35 Aligned_cols=26 Identities=35% Similarity=0.532 Sum_probs=20.7
Q ss_pred eceeeEe--cCCcEEecCCCcEEEEEeC
Q 028274 20 RAGKMTF--DGKKVVPDSRKGLVRIARG 45 (211)
Q Consensus 20 kAGKm~~--~g~~V~Pd~rKG~l~l~~~ 45 (211)
++|+..+ .|+-|.|+.-||.++|...
T Consensus 55 ~~G~v~I~qkG~pVdp~~~rGpiRir~~ 82 (85)
T 2ns0_A 55 DAGEVEVTQKGAVVDPRSARGPIRIRWT 82 (85)
T ss_dssp HTTSEEEEETTEECCTTTCCSCCEEEEC
T ss_pred HCCcEEEEECCEEcCcccCCCCEEeecC
Confidence 4677765 5788999999999999764
Done!