Query 028278
Match_columns 211
No_of_seqs 107 out of 353
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 09:02:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028278.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028278hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3106 ER lumen protein retai 100.0 4.7E-74 1E-78 486.7 14.1 178 1-180 1-178 (212)
2 COG5196 ERD2 ER lumen protein 100.0 1.6E-64 3.4E-69 423.5 15.0 175 1-177 1-176 (214)
3 PF00810 ER_lumen_recept: ER l 100.0 5.2E-58 1.1E-62 375.5 13.7 143 28-172 1-147 (147)
4 TIGR00951 2A43 Lysosomal Cysti 96.1 0.52 1.1E-05 41.1 15.7 139 11-152 14-173 (220)
5 PF04193 PQ-loop: PQ loop repe 94.9 0.16 3.6E-06 34.8 6.8 55 118-172 2-56 (61)
6 KOG3211 Predicted endoplasmic 93.2 0.85 1.8E-05 40.4 9.4 140 19-164 49-191 (230)
7 PF04193 PQ-loop: PQ loop repe 92.4 0.27 5.8E-06 33.7 4.3 42 6-47 7-48 (61)
8 smart00679 CTNS Repeated motif 85.8 0.68 1.5E-05 27.8 2.0 25 18-42 5-29 (32)
9 PHA02246 hypothetical protein 84.0 27 0.00058 30.0 12.2 127 20-167 24-158 (192)
10 smart00679 CTNS Repeated motif 67.5 4.6 9.9E-05 24.1 1.9 26 131-156 1-26 (32)
11 PTZ00154 40S ribosomal protein 60.8 5.6 0.00012 32.8 1.7 27 5-38 49-75 (134)
12 COG4095 Uncharacterized conser 47.7 96 0.0021 24.0 6.5 46 125-170 12-57 (89)
13 PF06770 Arif-1: Actin-rearran 38.8 91 0.002 27.3 5.8 57 127-204 87-150 (196)
14 TIGR00951 2A43 Lysosomal Cysti 34.1 1E+02 0.0022 26.8 5.4 38 128-165 14-51 (220)
15 COG4095 Uncharacterized conser 34.0 97 0.0021 24.0 4.6 34 7-40 11-44 (89)
16 PF08733 PalH: PalH/RIM21; In 32.7 2.9E+02 0.0062 25.8 8.5 81 2-88 164-260 (348)
17 PF10192 GpcrRhopsn4: Rhodopsi 31.2 3.5E+02 0.0077 23.6 8.5 15 98-112 219-234 (257)
18 KOG2592 Tumor differentially e 30.1 5.3E+02 0.012 25.2 10.1 111 54-171 74-199 (426)
19 PF03083 MtN3_slv: Sugar efflu 28.8 86 0.0019 22.6 3.6 35 4-38 3-40 (87)
20 COG5533 UBP5 Ubiquitin C-termi 28.6 29 0.00062 33.0 1.2 19 190-208 75-93 (415)
21 PF02790 COX2_TM: Cytochrome C 24.1 1.1E+02 0.0024 21.6 3.4 17 98-114 65-81 (84)
No 1
>KOG3106 consensus ER lumen protein retaining receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.7e-74 Score=486.75 Aligned_cols=178 Identities=61% Similarity=1.048 Sum_probs=175.2
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHc
Q 028278 1 MNIFRFAGDMTHLISILVLLLKIYATKSCSGISLKTQELYALVFLTRYLDLFTDFISVYNTVMKLVFIASSLAIVWCMRM 80 (211)
Q Consensus 1 mnifr~~gd~~Hl~s~~lLl~Ki~~~KS~sGlSlKTQ~Ly~iVf~~Ryldl~~~~~s~Ynt~mki~~i~~s~~iiyli~~ 80 (211)
||.||++||++|++|+++|++||+|+|||+|||+|||+||++||++||+|+|+.+.|.||++||++++++|.+++|+|++
T Consensus 1 mn~fr~~gd~~H~~~i~vLi~Ki~ktrsCaGiSlKSQ~L~Alvf~~Ryldlf~~~~s~ynt~mki~fl~~t~~ivymi~~ 80 (212)
T KOG3106|consen 1 MNNFRFAGDLSHLAAIIVLILKIWKTKSCAGISLKSQELFALVFATRYLDLFTFYESLYNTIMKIAFLASTLWIVYMIRF 80 (212)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccccchhhhHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHhHH
Q 028278 81 HRAVRRTYDKELDTFRHYFLIAACFVLSLILNEKFTFQEIFWAFSIYLEAVAILPQLVLLQRSGNVDNLTGQYVFFLGAY 160 (211)
Q Consensus 81 ~~~yk~TY~~~~Dtf~~~~liip~~vLall~~~~~~~~eilWtFSiyLEsvAILPQL~mlqk~g~vE~lTshYv~aLG~y 160 (211)
|+|+|||+|+|||+++|+++||+++|+++||++++.|++|+||+|||||||||||+|+||+|++|++|+||+++||+|
T Consensus 81 --k~~~tYd~~~DtFri~~llvp~~vlsl~i~~~~t~~eilWtFsiyLEsVaILPQL~~lq~tg~~E~~TahYvfaLG~y 158 (212)
T KOG3106|consen 81 --KLRATYDKEKDTFRIEYLLVPSAVLSLLINHSFTILEILWTFSIYLESVAILPQLFMLQKTGEAETITAHYLFALGLY 158 (212)
T ss_pred --HHHHHHhcccCceeEEEEehhheeeeeeecCCccHHHHHHHHHHHHHHHHHhHHHHHHHhcCCccchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCccc
Q 028278 161 RAFYILNWIYRYITEPHFSR 180 (211)
Q Consensus 161 R~lyl~~Wi~ry~~~~~~~~ 180 (211)
|++|++|||+||.+|+++++
T Consensus 159 R~ly~~~WI~r~~~e~~~~~ 178 (212)
T KOG3106|consen 159 RALYIANWIYRYVTEDFWDP 178 (212)
T ss_pred HHHHHHHHHHHHHhhccccc
Confidence 99999999999999996543
No 2
>COG5196 ERD2 ER lumen protein retaining receptor [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.6e-64 Score=423.54 Aligned_cols=175 Identities=52% Similarity=0.870 Sum_probs=170.9
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHhhcccccc-hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 028278 1 MNIFRFAGDMTHLISILVLLLKIYATKSCSGISLKTQELYALVFLTRYLDLFT-DFISVYNTVMKLVFIASSLAIVWCMR 79 (211)
Q Consensus 1 mnifr~~gd~~Hl~s~~lLl~Ki~~~KS~sGlSlKTQ~Ly~iVf~~Ryldl~~-~~~s~Ynt~mki~~i~~s~~iiyli~ 79 (211)
||.||++||++|++|+.+|+.||+|+|+|+|+|+|||.+|++||++||+|+++ .+.|+||.+||++||+++.+|+++|+
T Consensus 1 m~~Fr~lGD~~Hlasi~vLih~ik~tr~csGlSlKtq~Ly~lVfitRYldLf~f~~~slYn~lMki~FI~s~~yI~~lm~ 80 (214)
T COG5196 1 MDTFRFLGDFLHLASIAVLIHKIKRTRSCSGLSLKTQFLYSLVFITRYLDLFDFYARSLYNSLMKILFIGSQVYILFLMR 80 (214)
T ss_pred CcHHHHHhHHHHHHHHHHHHHHhhhcceecceehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999995 45799999999999999999999999
Q ss_pred cccccccccccccccccchhhhHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHhH
Q 028278 80 MHRAVRRTYDKELDTFRHYFLIAACFVLSLILNEKFTFQEIFWAFSIYLEAVAILPQLVLLQRSGNVDNLTGQYVFFLGA 159 (211)
Q Consensus 80 ~~~~yk~TY~~~~Dtf~~~~liip~~vLall~~~~~~~~eilWtFSiyLEsvAILPQL~mlqk~g~vE~lTshYv~aLG~ 159 (211)
+ ++++||||..|||+.+++++||+++|+++|++.++.+++|+||+|||||||+|||+|+||.||-|++|+||++++|+
T Consensus 81 ~--~~r~tYdk~lDtF~i~~ll~gsav~slff~~~~tisnvlwtfS~wLESVAILPQL~mLq~~GeteslT~hYvfamgL 158 (214)
T COG5196 81 F--KYRSTYDKKLDTFNILTLLVGSAVFSLFFTRGGTISNVLWTFSLWLESVAILPQLVMLQEAGETESLTSHYVFAMGL 158 (214)
T ss_pred h--cccchHHHhhhhhhhhhhhhhhhhheeeecCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeHHHHHHHHHH
Confidence 9 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCC
Q 028278 160 YRAFYILNWIYRYITEPH 177 (211)
Q Consensus 160 yR~lyl~~Wi~ry~~~~~ 177 (211)
||++|++|||+|+..+.+
T Consensus 159 YRalYip~wI~r~~~~~k 176 (214)
T COG5196 159 YRALYIPYWILRKVYDIK 176 (214)
T ss_pred HHHhhhhHHHHHhhhccc
Confidence 999999999999988753
No 3
>PF00810 ER_lumen_recept: ER lumen protein retaining receptor; InterPro: IPR000133 Proteins resident in the lumen of the endoplasmic reticulum (ER) contain a C-terminal tetrapeptide, commonly known as Lys-Asp-Glu-Leu (KDEL) in mammals and His-Asp-Glu-Leu (HDEL) in yeast (Saccharomyces cerevisiae) that acts as a signal for their retrieval from subsequent compartments of the secretory pathway. The receptor for this signal is a ~26 kDa Golgi membrane protein, initially identified as the ERD2 gene product in S. cerevisiae. The receptor molecule, known variously as the ER lumen protein retaining receptor or the 'KDEL receptor', is believed to cycle between the cis side of the Golgi apparatus and the ER. It has also been characterised in a number of other species, including plants, Plasmodium, Drosophila and mammals. In mammals, 2 highly related forms of the receptor are known. The KDEL receptor is a highly hydrophobic protein of 220 residues; its sequence exhibits 7 hydrophobic regions, all of which have been suggested to traverse the membrane []. More recently, however, it has been suggested that only 6 of these regions are transmembrane (TM), resulting in both N- and C-termini on the cytoplasmic side of the membrane.; GO: 0046923 ER retention sequence binding, 0006621 protein retention in ER lumen, 0016021 integral to membrane
Probab=100.00 E-value=5.2e-58 Score=375.51 Aligned_cols=143 Identities=64% Similarity=1.149 Sum_probs=138.9
Q ss_pred ccccccchhhHHHHHHHHhhcccc--cchhHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccchhhhHHHH
Q 028278 28 SCSGISLKTQELYALVFLTRYLDL--FTDFISVYNTVMKLVFIASSLAIVWCMRMHRAVRRTYDKELDTFRHYFLIAACF 105 (211)
Q Consensus 28 S~sGlSlKTQ~Ly~iVf~~Ryldl--~~~~~s~Ynt~mki~~i~~s~~iiyli~~~~~yk~TY~~~~Dtf~~~~liip~~ 105 (211)
||+|+|+|||+||++|+++||+|+ +.++.+.||++||++++++|++++|+|++ |||+|||+++|+|+..++++||+
T Consensus 1 S~~GlSlktq~ly~~vf~~Ryldl~~f~~~~s~y~~~~k~~~i~~s~~iiyli~~--~~~~Ty~~~~D~f~~~~li~p~~ 78 (147)
T PF00810_consen 1 SCSGLSLKTQILYAIVFLTRYLDLFWFESYLSLYNTIMKVFFIVSSLYIIYLIFF--KYKSTYDKEIDTFRLEYLIVPCF 78 (147)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhe--eehhhhhccccchhhhHHHHHHH
Confidence 799999999999999999999999 66778999999999999999999999998 99999999999999999999999
Q ss_pred HHHHHhc--CCcchhHHHHHHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHhHHHHHHHHHHHHHH
Q 028278 106 VLSLILN--EKFTFQEIFWAFSIYLEAVAILPQLVLLQRSGNVDNLTGQYVFFLGAYRAFYILNWIYRY 172 (211)
Q Consensus 106 vLall~~--~~~~~~eilWtFSiyLEsvAILPQL~mlqk~g~vE~lTshYv~aLG~yR~lyl~~Wi~ry 172 (211)
+||+++| +++++.|++|+||+|||||||+|||+|+||+||+|++|+||+++||+||++|++|||+||
T Consensus 79 vLa~i~~p~~~~~~~ei~wtfSi~LEsvAIlPQL~m~~k~~~ve~ltshYv~~Lg~yR~ly~~~Wi~rY 147 (147)
T PF00810_consen 79 VLALIFHPLNSFFFLEILWTFSIYLESVAILPQLFMLQKTGEVENLTSHYVFALGLYRALYLLNWIYRY 147 (147)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHHHHHHhHHHHHHHHhcCeeehHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999 557899999999999999999999999999999999999999999999999999999997
No 4
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=96.08 E-value=0.52 Score=41.06 Aligned_cols=139 Identities=16% Similarity=0.189 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHh-------hcccccc--hh-HHHHHHHHHHHHHH-----HHHHHH
Q 028278 11 THLISILVLLLKIYATKSCSGISLKTQELYALVFLT-------RYLDLFT--DF-ISVYNTVMKLVFIA-----SSLAIV 75 (211)
Q Consensus 11 ~Hl~s~~lLl~Ki~~~KS~sGlSlKTQ~Ly~iVf~~-------Ryldl~~--~~-~s~Ynt~mki~~i~-----~s~~ii 75 (211)
....++..=+.|++|+||+.|+|+..-.+-.+.+.+ +|.+-.. .+ ...|..-.+-++++ .++.+.
T Consensus 14 ~~~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~yn~~~~~~~~~~~~~~~~~~~v~~edl~~ai~~~il~~l~~ 93 (220)
T TIGR00951 14 AWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCWSITNEFPLSSPGVTQNDVFFTLHAILICFIVL 93 (220)
T ss_pred HHHHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccCCCcHHHHHHHHHHHHHHHHHH
Confidence 355667777899999999999999997755444432 2211100 00 01111111222222 222232
Q ss_pred HHHHccccccccccccccccc----chhhhHHHHHHHHHhcCC--cchhHHHHHHHHHHHHHHHHHHHHHHHhcCCccch
Q 028278 76 WCMRMHRAVRRTYDKELDTFR----HYFLIAACFVLSLILNEK--FTFQEIFWAFSIYLEAVAILPQLVLLQRSGNVDNL 149 (211)
Q Consensus 76 yli~~~~~yk~TY~~~~Dtf~----~~~liip~~vLall~~~~--~~~~eilWtFSiyLEsvAILPQL~mlqk~g~vE~l 149 (211)
+... ++.+..++...+.. ..++.+.+..+..+..+. ..+.+.++...+-+-.++-+||..+-.|.|..+.+
T Consensus 94 ~q~~---~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~iki~is~ikyiPQi~~Ny~~ksT~gl 170 (220)
T TIGR00951 94 HQCG---DYERGWQRVSNPWILRILVALLACFATLLVALLSPITPLAFVTMLSYIKVAVTLVKYFPQAATNYHNKSTGQL 170 (220)
T ss_pred HHHh---hccccccccchhHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCCcC
Confidence 3322 22211111111111 012222222222333322 24566677777888888999999998886655544
Q ss_pred HHH
Q 028278 150 TGQ 152 (211)
Q Consensus 150 Tsh 152 (211)
..-
T Consensus 171 Si~ 173 (220)
T TIGR00951 171 SII 173 (220)
T ss_pred CHH
Confidence 433
No 5
>PF04193 PQ-loop: PQ loop repeat
Probab=94.87 E-value=0.16 Score=34.76 Aligned_cols=55 Identities=18% Similarity=0.232 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHhHHHHHHHHHHHHHH
Q 028278 118 QEIFWAFSIYLEAVAILPQLVLLQRSGNVDNLTGQYVFFLGAYRAFYILNWIYRY 172 (211)
Q Consensus 118 ~eilWtFSiyLEsvAILPQL~mlqk~g~vE~lTshYv~aLG~yR~lyl~~Wi~ry 172 (211)
.+++...+..+.+++-+||+....|+++++.+..-++.......++.+++.+...
T Consensus 2 ~~~~g~i~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~~ 56 (61)
T PF04193_consen 2 SNILGIISIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILSN 56 (61)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHhc
Confidence 4677888999999999999999999999999999999999999999988887653
No 6
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=93.17 E-value=0.85 Score=40.37 Aligned_cols=140 Identities=16% Similarity=0.093 Sum_probs=77.5
Q ss_pred HHHHHHhhcccccccchhhHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccch
Q 028278 19 LLLKIYATKSCSGISLKTQELYALVFLTRYLDLFTDFISVYNTVMKLVFIASSLAIVWCMRMHRAVRRTYDKELDTFRHY 98 (211)
Q Consensus 19 Ll~Ki~~~KS~sGlSlKTQ~Ly~iVf~~Ryldl~~~~~s~Ynt~mki~~i~~s~~iiyli~~~~~yk~TY~~~~Dtf~~~ 98 (211)
=+.||...||+.|+|+.+|+|=++.++.-..--++ ...-....++..++..+..++-++.+ .|+-.- -..|.+--.
T Consensus 49 QI~kI~aakSa~GLSv~s~~LElvgytvtl~Y~~~-~g~pFss~gE~~fLl~Q~vili~~if--~f~~~~-~~~v~~l~~ 124 (230)
T KOG3211|consen 49 QIMKIRAAKSARGLSVVSLLLELVGYTVTLSYSYT-SGYPFSSYGEYPFLLLQAVILILCIF--HFSGQT-VTVVQFLGY 124 (230)
T ss_pred HHHHHHhhcccccccHHHHHHHHHHHHheeeehhh-cCCCchhHHHHHHHHHHHHHHHHHHH--Hhccce-eehhhHHHH
Confidence 35899999999999999999888777532111011 01111334677788888887777777 655111 112233223
Q ss_pred hhhHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHhc---CCccchHHHHHHHHhHHHHHH
Q 028278 99 FLIAACFVLSLILNEKFTFQEIFWAFSIYLEAVAILPQLVLLQRS---GNVDNLTGQYVFFLGAYRAFY 164 (211)
Q Consensus 99 ~liip~~vLall~~~~~~~~eilWtFSiyLEsvAILPQL~mlqk~---g~vE~lTshYv~aLG~yR~ly 164 (211)
+.+++..+.+.. .| .++.+..=+-.+-.-.++=+||..-..|+ |...-+|.---+.=.+.|.++
T Consensus 125 ~~~v~~~~~sk~-~p-~~~~~L~~~~~l~i~v~sr~~Qi~~n~~~~~tgqls~it~fLsf~g~lARift 191 (230)
T KOG3211|consen 125 IALVVSVLASKA-LP-LWIITLAQNLCLPIVVVSRLLQIQCNYHNRSTGQLSLITVFLSFGGCLARIFT 191 (230)
T ss_pred HHHHHHHHHHhh-hh-HHHHHHHHhcCchhhhHHHHHHHHHHhcccccchhHHHHHHHHhhhHHHHHHH
Confidence 333333222211 11 11222222233333447778999887764 666666665555555666654
No 7
>PF04193 PQ-loop: PQ loop repeat
Probab=92.40 E-value=0.27 Score=33.68 Aligned_cols=42 Identities=26% Similarity=0.275 Sum_probs=32.8
Q ss_pred hhhhhHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHhh
Q 028278 6 FAGDMTHLISILVLLLKIYATKSCSGISLKTQELYALVFLTR 47 (211)
Q Consensus 6 ~~gd~~Hl~s~~lLl~Ki~~~KS~sGlSlKTQ~Ly~iVf~~R 47 (211)
..|-..-+++.+.=++|.+|+||+.|+|..+..+..+..+.+
T Consensus 7 ~i~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~ 48 (61)
T PF04193_consen 7 IISIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILW 48 (61)
T ss_pred HHHHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHH
Confidence 344455556666777999999999999999998887777655
No 8
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=85.77 E-value=0.68 Score=27.83 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=19.9
Q ss_pred HHHHHHHhhcccccccchhhHHHHH
Q 028278 18 VLLLKIYATKSCSGISLKTQELYAL 42 (211)
Q Consensus 18 lLl~Ki~~~KS~sGlSlKTQ~Ly~i 42 (211)
.=++|++|+||+.|+|+-...+-..
T Consensus 5 PQi~~~~~~ks~~glS~~~~~l~~~ 29 (32)
T smart00679 5 PQIIKNYRRKSTEGLSILFVLLWLL 29 (32)
T ss_pred hHHHHHHHcCCcCcCCHHHHHHHHh
Confidence 3468999999999999987765443
No 9
>PHA02246 hypothetical protein
Probab=83.96 E-value=27 Score=30.02 Aligned_cols=127 Identities=21% Similarity=0.303 Sum_probs=71.6
Q ss_pred HHHHHhhcccccccchhhHHHHHHHHhhcccccchhHHHHHHHHH------HHH--HHHHHHHHHHHHcccccccccccc
Q 028278 20 LLKIYATKSCSGISLKTQELYALVFLTRYLDLFTDFISVYNTVMK------LVF--IASSLAIVWCMRMHRAVRRTYDKE 91 (211)
Q Consensus 20 l~Ki~~~KS~sGlSlKTQ~Ly~iVf~~Ryldl~~~~~s~Ynt~mk------i~~--i~~s~~iiyli~~~~~yk~TY~~~ 91 (211)
+..+.++||..|+|- -+-|++++... .|.||..-- ++. +-....++-+.-. .|| +
T Consensus 24 L~slvk~~nv~GvS~--~FWYLi~~tvg--------iSfyNlL~T~~~~fqi~svg~nl~lgivcLlv~--~~r-----k 86 (192)
T PHA02246 24 LVALVKAESVKGVSN--YFWYLIVATVG--------ISFYNLLLTDASVFQIVSVGLNLTLGIVCLLVA--SYR-----K 86 (192)
T ss_pred HHHHhhhcccccHHH--HHHHHHHHHHH--------HHHHHHHhcCCceEEEeeeehhhhhhhhheeee--hhh-----c
Confidence 467889999999983 45566655332 456664311 111 1122333444333 222 2
Q ss_pred cccccchhhhHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHhHHHHHHHHH
Q 028278 92 LDTFRHYFLIAACFVLSLILNEKFTFQEIFWAFSIYLEAVAILPQLVLLQRSGNVDNLTGQYVFFLGAYRAFYILN 167 (211)
Q Consensus 92 ~Dtf~~~~liip~~vLall~~~~~~~~eilWtFSiyLEsvAILPQL~mlqk~g~vE~lTshYv~aLG~yR~lyl~~ 167 (211)
.|-|...++++-++.+-++ . +..|+.-+.+.----.|-.||...+.|++..|....-.-..+|..=++-..+
T Consensus 87 kd~f~~~fiiifSLllfll-~---~~~evtQtVat~tIiLaYi~QIIqfyKTK~SEg~n~~l~lii~~GL~~L~~~ 158 (192)
T PHA02246 87 KDYFSIPFIIVFSLLLFLL-S---DFTALTQTVATITIILAYVTQITTFYKTKSAEGTNRFLFLIIGLGLASLIVS 158 (192)
T ss_pred cccccchHHHHHHHHHHHH-h---hhHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHHHHHHH
Confidence 4777777777665544322 1 1234444444333456789999999999999987766655566554443333
No 10
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=67.48 E-value=4.6 Score=24.12 Aligned_cols=26 Identities=27% Similarity=0.514 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhcCCccchHHHHHHH
Q 028278 131 VAILPQLVLLQRSGNVDNLTGQYVFF 156 (211)
Q Consensus 131 vAILPQL~mlqk~g~vE~lTshYv~a 156 (211)
++.+||.....|++.++.+..-+++.
T Consensus 1 ~~~~PQi~~~~~~ks~~glS~~~~~l 26 (32)
T smart00679 1 VSLLPQIIKNYRRKSTEGLSILFVLL 26 (32)
T ss_pred CcchhHHHHHHHcCCcCcCCHHHHHH
Confidence 35689999999999999887776664
No 11
>PTZ00154 40S ribosomal protein S17; Provisional
Probab=60.82 E-value=5.6 Score=32.79 Aligned_cols=27 Identities=48% Similarity=0.608 Sum_probs=20.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhcccccccchhhH
Q 028278 5 RFAGDMTHLISILVLLLKIYATKSCSGISLKTQE 38 (211)
Q Consensus 5 r~~gd~~Hl~s~~lLl~Ki~~~KS~sGlSlKTQ~ 38 (211)
|++|...|+ .|-.+...+.|||+|.|+
T Consensus 49 rIAGYIThl-------mkri~~gpvrgis~klqe 75 (134)
T PTZ00154 49 KIAGFVTHL-------MKRIQKGPVRGISLKLQE 75 (134)
T ss_pred HHHHHHHHH-------HhhhccCCccccceehhH
Confidence 566777765 455566789999999997
No 12
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=47.72 E-value=96 Score=23.98 Aligned_cols=46 Identities=20% Similarity=0.294 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHhHHHHHHHHHHHH
Q 028278 125 SIYLEAVAILPQLVLLQRSGNVDNLTGQYVFFLGAYRAFYILNWIY 170 (211)
Q Consensus 125 SiyLEsvAILPQL~mlqk~g~vE~lTshYv~aLG~yR~lyl~~Wi~ 170 (211)
+--+-.+|.+||+...-|+++-.+++--....+..++++-+++=|.
T Consensus 12 a~ilttf~flPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygIL 57 (89)
T COG4095 12 AGILTTFAFLPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGIL 57 (89)
T ss_pred HHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 3345578999999999999999999988888888888886654443
No 13
>PF06770 Arif-1: Actin-rearrangement-inducing factor (Arif-1); InterPro: IPR010639 This family consists of several Nucleopolyhedrovirus actin-rearrangement-inducing factor (Arif-1) proteins. In response to Autographa californica nuclear polyhedrosis virus (AcMNPV) infection, a sequential rearrangement of the actin cytoskeleton occurs this is induced by Arif-1 []. Arif-1 is tyrosine phosphorylated and is located at the plasma membrane as a component of the actin rearrangement-inducing complex [].
Probab=38.80 E-value=91 Score=27.28 Aligned_cols=57 Identities=26% Similarity=0.467 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHhcCCccchHHHHHHHHhHHHHHHHHHHHHHHhcCCCccceeEEE----eecccc---ccccccch
Q 028278 127 YLEAVAILPQLVLLQRSGNVDNLTGQYVFFLGAYRAFYILNWIYRYITEPHFSRWIGKI----YHESKR---KENCCVTN 199 (211)
Q Consensus 127 yLEsvAILPQL~mlqk~g~vE~lTshYv~aLG~yR~lyl~~Wi~ry~~~~~~~~~i~~~----~~~~~~---~~~~~~~~ 199 (211)
++--++..||+. |.|.+-.+..+| |-++.++ ..|=++. .|++.. ++|||.-|
T Consensus 87 ~m~f~~~~~~iv---k~GHvP~LDv~~-----------------R~yD~ds-~CW~gIv~~~~~~D~NaI~~~~NC~~~n 145 (196)
T PF06770_consen 87 WMLFVCFQPWIV---KYGHVPALDVLY-----------------RDYDRDS-LCWDGIVVRKYVHDYNAIQVDQNCFYRN 145 (196)
T ss_pred HHHHHHHHHHHH---HcCCchhhhhhh-----------------hhcCCcc-cccCCeEeeeeccChhhhccCCceEEee
Confidence 455566667765 778887777765 5566665 5888888 555544 36999887
Q ss_pred hhhHH
Q 028278 200 AALEC 204 (211)
Q Consensus 200 ~~~~~ 204 (211)
.-.-|
T Consensus 146 ~~~~C 150 (196)
T PF06770_consen 146 FYKKC 150 (196)
T ss_pred eeehh
Confidence 65544
No 14
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=34.09 E-value=1e+02 Score=26.82 Aligned_cols=38 Identities=16% Similarity=0.218 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHhcCCccchHHHHHHHHhHHHHHHH
Q 028278 128 LEAVAILPQLVLLQRSGNVDNLTGQYVFFLGAYRAFYI 165 (211)
Q Consensus 128 LEsvAILPQL~mlqk~g~vE~lTshYv~aLG~yR~lyl 165 (211)
.=+++-+||.....|++.+|.+.-.++..=...=+.+.
T Consensus 14 ~~~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~ 51 (220)
T TIGR00951 14 AWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYV 51 (220)
T ss_pred HHHHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHH
Confidence 34567889999999999999998888884333333333
No 15
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=33.97 E-value=97 Score=23.96 Aligned_cols=34 Identities=26% Similarity=0.297 Sum_probs=26.3
Q ss_pred hhhhHHHHHHHHHHHHHHhhcccccccchhhHHH
Q 028278 7 AGDMTHLISILVLLLKIYATKSCSGISLKTQELY 40 (211)
Q Consensus 7 ~gd~~Hl~s~~lLl~Ki~~~KS~sGlSlKTQ~Ly 40 (211)
.|...-.++++.=+.|+.|+||.+++|+-+-...
T Consensus 11 ia~ilttf~flPQ~iki~ktK~t~~Isl~~fii~ 44 (89)
T COG4095 11 IAGILTTFAFLPQLIKIIKTKNTASISLPMFIIL 44 (89)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccccHHHHHHH
Confidence 3455556788888899999999999998755433
No 16
>PF08733 PalH: PalH/RIM21; InterPro: IPR014844 PalH (also known as RIM21) is a transmembrane protein required for proteolytic cleavage of Rim101/PacC transcription factors which are activated by C-terminal proteolytic processing. Rim101/PacC family proteins play a key role in pH-dependent responses and PalH has been implicated as a pH sensor [].
Probab=32.71 E-value=2.9e+02 Score=25.78 Aligned_cols=81 Identities=10% Similarity=0.271 Sum_probs=49.7
Q ss_pred chhhhhhhhHHHHHHHHHHHHH-Hhhcc-----ccc--ccchhhHHHHHHH-------HhhcccccchhHHHHHHHHHH-
Q 028278 2 NIFRFAGDMTHLISILVLLLKI-YATKS-----CSG--ISLKTQELYALVF-------LTRYLDLFTDFISVYNTVMKL- 65 (211)
Q Consensus 2 nifr~~gd~~Hl~s~~lLl~Ki-~~~KS-----~sG--lSlKTQ~Ly~iVf-------~~Ryldl~~~~~s~Ynt~mki- 65 (211)
|+.|++.++.--++=+-.+.++ .|+|. ..| +++-.|+++++-- -.+..|.+.-+.. ++++
T Consensus 164 ~v~~lis~~~l~l~qvqiv~rlF~R~~eK~~i~~vG~~L~i~~~il~ai~~f~~~~~~~~~~~~~lp~~~y----l~~ia 239 (348)
T PF08733_consen 164 RVIDLISNFFLQLAQVQIVIRLFPRQKEKRIIFWVGFILIILDQILWAINQFSYFDSDPNSFLDILPAFSY----LFRIA 239 (348)
T ss_pred eeHHHHHHHHHHHHHHHHHHHhhcccCcEEEEeeHHHHHHHHHHHHHHHHHhccCCCCccccccchHHHHH----HHHHH
Confidence 5677888887777878888888 44432 224 4556688888876 3444444432222 2343
Q ss_pred HHHHHHHHHHHHHHccccccccc
Q 028278 66 VFIASSLAIVWCMRMHRAVRRTY 88 (211)
Q Consensus 66 ~~i~~s~~iiyli~~~~~yk~TY 88 (211)
++....+.++|.... |.|--|
T Consensus 240 l~~~ya~~v~~y~~~--k~k~~~ 260 (348)
T PF08733_consen 240 LSTLYAAWVIYYIIS--KKKYCF 260 (348)
T ss_pred HHHHHHHHHHHHHHh--hhhhhe
Confidence 455556777888877 555556
No 17
>PF10192 GpcrRhopsn4: Rhodopsin-like GPCR transmembrane domain; InterPro: IPR019336 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). This region of 270 amino acids is the seven transmembrane alpha-helical domains included within five GPCRRHODOPSN4 motifs of a G-protein-coupled-receptor (GPCR) protein, conserved from nematodes to humans [].
Probab=31.16 E-value=3.5e+02 Score=23.57 Aligned_cols=15 Identities=20% Similarity=0.530 Sum_probs=7.8
Q ss_pred hhhhHHHHHH-HHHhc
Q 028278 98 YFLIAACFVL-SLILN 112 (211)
Q Consensus 98 ~~liip~~vL-all~~ 112 (211)
+++..|..++ |.++.
T Consensus 219 WFl~~Pv~~~ia~~v~ 234 (257)
T PF10192_consen 219 WFLSLPVIVIIAHFVD 234 (257)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 3566776544 44433
No 18
>KOG2592 consensus Tumor differentially expressed (TDE) protein [Function unknown]
Probab=30.14 E-value=5.3e+02 Score=25.19 Aligned_cols=111 Identities=22% Similarity=0.332 Sum_probs=74.9
Q ss_pred hhHHHHHHHHHH--HHHHHHHHHHHHHHccccccccccccc---cc-ccchhhhHHHHHHHHHhcCCcchhHHHHHHHHH
Q 028278 54 DFISVYNTVMKL--VFIASSLAIVWCMRMHRAVRRTYDKEL---DT-FRHYFLIAACFVLSLILNEKFTFQEIFWAFSIY 127 (211)
Q Consensus 54 ~~~s~Ynt~mki--~~i~~s~~iiyli~~~~~yk~TY~~~~---Dt-f~~~~liip~~vLall~~~~~~~~eilWtFSiy 127 (211)
++..+|+..+.. +++..+ ++.. .-|++-|.+. .. +...+++--+++...++-|+-++.-.--..|+.
T Consensus 74 gy~AVyR~~f~~a~Ff~~ls-----llm~--gVkss~D~R~~iqng~W~fK~i~~~~l~i~~FfIP~~~~~~~~~~v~~~ 146 (426)
T KOG2592|consen 74 GYKAVYRLCFGLACFFLLLS-----LLMI--GVKSSKDPRAAIQNGFWFFKFILWFGLIVGSFFIPNGFFISFWFYVSVF 146 (426)
T ss_pred hhhHHHHHHHHHHHHHHHHH-----HHHH--hcCcCCCHHHHHHcCcHHHHHHHHHHHHHheEEcCCccchhHHHHHHHH
Confidence 466788765543 444333 3333 5566666552 22 244577777777778888886655555558888
Q ss_pred HHHHHHHHHHHHHHh---------cCCccchHHHHHHHHhHHHHHHHHHHHHH
Q 028278 128 LEAVAILPQLVLLQR---------SGNVDNLTGQYVFFLGAYRAFYILNWIYR 171 (211)
Q Consensus 128 LEsvAILPQL~mlqk---------~g~vE~lTshYv~aLG~yR~lyl~~Wi~r 171 (211)
=-+.-||=||.++-. -+++|+-..-|-+.++..=.+|++-=+-.
T Consensus 147 Ga~~FILvqLvLLvDFaH~w~e~wv~~~Edsr~wy~~Ll~~T~~~Y~~s~~~~ 199 (426)
T KOG2592|consen 147 GAALFILVQLVLLVDFAHSWNESWVEKVEDSRFWYAALLGVTLLMYLLSLVAT 199 (426)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999753 25788777888899998888888866543
No 19
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=28.80 E-value=86 Score=22.59 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=25.4
Q ss_pred hhhhhhhHHHHHH---HHHHHHHHhhcccccccchhhH
Q 028278 4 FRFAGDMTHLISI---LVLLLKIYATKSCSGISLKTQE 38 (211)
Q Consensus 4 fr~~gd~~Hl~s~---~lLl~Ki~~~KS~sGlSlKTQ~ 38 (211)
+..+|..+.++.+ +.-+.++.|+||..++|.-...
T Consensus 3 lg~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~ 40 (87)
T PF03083_consen 3 LGILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFL 40 (87)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhH
Confidence 3455666655444 4777999999999999987654
No 20
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=28.56 E-value=29 Score=32.96 Aligned_cols=19 Identities=42% Similarity=0.781 Sum_probs=16.3
Q ss_pred ccccccccchhhhHHHHhh
Q 028278 190 KRKENCCVTNAALECLFFC 208 (211)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~ 208 (211)
..+.|||--|.+|+|++-|
T Consensus 75 ~N~GNtCymNc~lQCl~~~ 93 (415)
T COG5533 75 RNKGNTCYMNCALQCLLSI 93 (415)
T ss_pred cccCceehHHHHHHHHHhh
Confidence 3578999999999999865
No 21
>PF02790 COX2_TM: Cytochrome C oxidase subunit II, transmembrane domain This family corresponds to chains b and o.; InterPro: IPR011759 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The enzyme complex consists of 3-4 subunits (prokaryotes) to up to 13 polypeptides (mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A) (see IPR001505 from INTERPRO), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c. The N-terminal domain of cytochrome C oxidase contains two transmembrane alpha-helices. ; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0009055 electron carrier activity, 0022900 electron transport chain, 0016021 integral to membrane; PDB: 3VRJ_C 2EIN_B 3AG3_B 2DYR_O 3AG1_B 2EIK_O 3ASN_B 1OCR_B 2EIJ_B 1OCC_O ....
Probab=24.11 E-value=1.1e+02 Score=21.61 Aligned_cols=17 Identities=12% Similarity=0.231 Sum_probs=11.7
Q ss_pred hhhhHHHHHHHHHhcCC
Q 028278 98 YFLIAACFVLSLILNEK 114 (211)
Q Consensus 98 ~~liip~~vLall~~~~ 114 (211)
..-++|++++..+.-|+
T Consensus 65 ~WTiiP~iiLl~l~~pS 81 (84)
T PF02790_consen 65 IWTIIPAIILLFLAFPS 81 (84)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhhh
Confidence 46788888777665554
Done!