Query 028278
Match_columns 211
No_of_seqs 107 out of 353
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 14:43:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028278.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028278hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3dtub2 f.17.2.1 (B:30-129) Ba 32.1 23 0.0017 24.0 3.9 16 99-114 75-90 (100)
2 d3ehbb2 f.17.2.1 (B:1-107) Bac 31.1 26 0.0019 24.1 4.1 15 99-113 81-95 (107)
3 d1v54b2 f.17.2.1 (B:1-90) Mito 24.7 36 0.0026 22.7 3.8 17 98-114 64-80 (90)
4 d1fftb2 f.17.2.1 (B:27-117) Cy 18.6 9.1 0.00067 25.9 -0.6 47 65-114 27-81 (91)
5 d1hvwa_ g.3.6.2 (A:) Atracotox 9.6 37 0.0027 18.0 0.4 8 191-198 10-17 (26)
6 d2fm9a1 a.257.1.1 (A:49-263) C 7.9 57 0.0042 25.5 1.0 12 127-138 195-206 (215)
7 d2exna1 b.165.1.1 (A:1-128) Hy 6.5 53 0.0039 22.9 0.1 12 25-36 8-19 (128)
8 d2oqpa1 a.26.1.2 (A:2-134) Int 6.0 77 0.0056 22.8 0.8 23 182-206 29-51 (133)
9 d1niga_ a.25.2.1 (A:) Hypothet 4.9 3.6E+02 0.026 19.3 4.1 32 148-180 94-125 (148)
10 d1sfua_ a.4.5.19 (A:) 34L {Yab 3.3 2.2E+02 0.016 18.3 1.4 30 116-147 26-55 (70)
No 1
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=32.10 E-value=23 Score=23.99 Aligned_cols=16 Identities=19% Similarity=0.129 Sum_probs=9.3
Q ss_pred hhhHHHHHHHHHhcCC
Q 028278 99 FLIAACFVLSLILNEK 114 (211)
Q Consensus 99 ~liip~~vLall~~~~ 114 (211)
.-++|++++..+.-|+
T Consensus 75 WTviP~lILi~l~~pS 90 (100)
T d3dtub2 75 WTIVPIVILVAIGAFS 90 (100)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5666666666554443
No 2
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=31.09 E-value=26 Score=24.13 Aligned_cols=15 Identities=13% Similarity=0.175 Sum_probs=7.1
Q ss_pred hhhHHHHHHHHHhcC
Q 028278 99 FLIAACFVLSLILNE 113 (211)
Q Consensus 99 ~liip~~vLall~~~ 113 (211)
.-++|.++|..+.-|
T Consensus 81 WTviP~lIL~~laip 95 (107)
T d3ehbb2 81 WTLVPVLILVAIGAF 95 (107)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555444333
No 3
>d1v54b2 f.17.2.1 (B:1-90) Mitochondrial cytochrome c oxidase, subunit II {Cow (Bos taurus) [TaxId: 9913]}
Probab=24.74 E-value=36 Score=22.73 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=9.1
Q ss_pred hhhhHHHHHHHHHhcCC
Q 028278 98 YFLIAACFVLSLILNEK 114 (211)
Q Consensus 98 ~~liip~~vLall~~~~ 114 (211)
..-++|+++|..+.-|+
T Consensus 64 iWTiiP~lILi~ia~PS 80 (90)
T d1v54b2 64 IWTILPAIILILIALPS 80 (90)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35556666555554444
No 4
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=18.59 E-value=9.1 Score=25.94 Aligned_cols=47 Identities=11% Similarity=0.062 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHcccccccccccccc------cccc--hhhhHHHHHHHHHhcCC
Q 028278 65 LVFIASSLAIVWCMRMHRAVRRTYDKELD------TFRH--YFLIAACFVLSLILNEK 114 (211)
Q Consensus 65 i~~i~~s~~iiyli~~~~~yk~TY~~~~D------tf~~--~~liip~~vLall~~~~ 114 (211)
++++.....++|.+. |||+.-+++.+ +-+. .+-++|.+++..+.-|+
T Consensus 27 iv~v~V~~~~~~~~~---ryR~~~~~~~~~~~~~~n~~lEi~WtiIP~iil~~iav~s 81 (91)
T d1fftb2 27 IVVIPAILMAVGFAW---KYRASNKDAKYSPNWSHSNKVEAVVWTVPILIIIFLAVLT 81 (91)
T ss_dssp TTTTHHHHHHHTTTT---TTTTSTTTCSSCCCCCCCSHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhe---eeeccCCccCCCCcccCCceehhhHHHHHHHHHHHHHHHH
Confidence 344455555566553 66654332211 1112 25667887777665444
No 5
>d1hvwa_ g.3.6.2 (A:) Atracotoxin-hvI (versutoxin) {Australian funnel-web spider (Hadronyche versuta) [TaxId: 6904]}
Probab=9.59 E-value=37 Score=17.98 Aligned_cols=8 Identities=50% Similarity=1.182 Sum_probs=5.9
Q ss_pred cccccccc
Q 028278 191 RKENCCVT 198 (211)
Q Consensus 191 ~~~~~~~~ 198 (211)
-.||||..
T Consensus 10 ynenccsq 17 (26)
T d1hvwa_ 10 YNENCCSQ 17 (26)
T ss_dssp STTSBSSC
T ss_pred CCcccccc
Confidence 46899964
No 6
>d2fm9a1 a.257.1.1 (A:49-263) Cell invasion protein SipA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=7.90 E-value=57 Score=25.49 Aligned_cols=12 Identities=33% Similarity=0.589 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHH
Q 028278 127 YLEAVAILPQLV 138 (211)
Q Consensus 127 yLEsvAILPQL~ 138 (211)
=||.+|++|||.
T Consensus 195 ~L~~~av~P~LL 206 (215)
T d2fm9a1 195 HLEMQTLIPLLL 206 (215)
T ss_dssp CCHHHHHHHHHH
T ss_pred hhhHHHHHHHHH
Confidence 478999999985
No 7
>d2exna1 b.165.1.1 (A:1-128) Hypothetical protein BB0938 {Bordetella bronchiseptica [TaxId: 518]}
Probab=6.47 E-value=53 Score=22.91 Aligned_cols=12 Identities=8% Similarity=0.313 Sum_probs=8.8
Q ss_pred hhcccccccchh
Q 028278 25 ATKSCSGISLKT 36 (211)
Q Consensus 25 ~~KS~sGlSlKT 36 (211)
-=|||.|+|+..
T Consensus 8 PIKsc~g~~~~~ 19 (128)
T d2exna1 8 PIAECGATTQSE 19 (128)
T ss_dssp EETTTEEECCGG
T ss_pred cccccCCccccc
Confidence 348899988753
No 8
>d2oqpa1 a.26.1.2 (A:2-134) Interleukin-21 (IL-21) {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.96 E-value=77 Score=22.79 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=18.1
Q ss_pred eEEEeeccccccccccchhhhHHHH
Q 028278 182 IGKIYHESKRKENCCVTNAALECLF 206 (211)
Q Consensus 182 i~~~~~~~~~~~~~~~~~~~~~~~~ 206 (211)
+.+.+.++.-+++|+++ |+.|..
T Consensus 29 ~~ll~tp~dv~~~C~~s--al~CFl 51 (133)
T d2oqpa1 29 PEFLPAPEDVETNCEWS--AFSCFQ 51 (133)
T ss_dssp CCCEECCCSCCTTTHHH--HHTHHH
T ss_pred hhhcCCCCCCCcCcHHH--HHHHHH
Confidence 45588888889999875 888864
No 9
>d1niga_ a.25.2.1 (A:) Hypothetical protein Ta1238 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=4.93 E-value=3.6e+02 Score=19.30 Aligned_cols=32 Identities=25% Similarity=0.395 Sum_probs=22.6
Q ss_pred chHHHHHHHHhHHHHHHHHHHHHHHhcCCCccc
Q 028278 148 NLTGQYVFFLGAYRAFYILNWIYRYITEPHFSR 180 (211)
Q Consensus 148 ~lTshYv~aLG~yR~lyl~~Wi~ry~~~~~~~~ 180 (211)
+=++-|.+ ++-+-+=.-+||+++.-+.++|..
T Consensus 94 nk~slYmf-lArsh~~~Av~~~~~m~edErFk~ 125 (148)
T d1niga_ 94 NRWSLYMF-LARSAVDSAVYWSYRMKETEEFKE 125 (148)
T ss_dssp CHHHHHHH-HHHHHHHHHHHHHHHHHTSTTTTT
T ss_pred chHHHHHH-HHHHHHHHHHHHHHHhcchHHHHH
Confidence 44666766 455556677899999888777754
No 10
>d1sfua_ a.4.5.19 (A:) 34L {Yaba-like disease virus, YLDV [TaxId: 132475]}
Probab=3.30 E-value=2.2e+02 Score=18.34 Aligned_cols=30 Identities=27% Similarity=0.193 Sum_probs=22.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 028278 116 TFQEIFWAFSIYLEAVAILPQLVLLQRSGNVD 147 (211)
Q Consensus 116 ~~~eilWtFSiyLEsvAILPQL~mlqk~g~vE 147 (211)
+-.++.+.+.+ +-=-|=+||+-+||+|.|-
T Consensus 26 tA~~LAk~Lg~--~Kk~VNr~LY~L~~~G~v~ 55 (70)
T d1sfua_ 26 TAISLSNRLKI--NKKKINQQLYKLQKEDTVK 55 (70)
T ss_dssp CHHHHHHHTTC--CHHHHHHHHHHHHHTTSEE
T ss_pred hHHHHHHHhCC--CHHHHHHHHHHHHHCCCee
Confidence 34577777764 6666779999999999764
Done!