BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028279
         (211 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q73NQ6|ISPH_TREDE 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Treponema
           denticola (strain ATCC 35405 / CIP 103919 / DSM 14222)
           GN=ispH PE=3 SV=1
          Length = 289

 Score = 35.8 bits (81), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 71/165 (43%), Gaps = 23/165 (13%)

Query: 43  IILILALTVFKTKQPITELQSAK-IDGIAPRVTFPAVDIQLNLTLDLQILVKNRNRASF- 100
           +I+I A  +  +K+   E   AK ID    RV       + +      IL  ++N     
Sbjct: 75  VIVIRAHGIPPSKKSELEKSGAKVIDATCSRVKASQALAKKHSEEAFVILAGDKNHGELI 134

Query: 101 ---KHGSGKSLLLYRGKQVGVVDIDPGLIPARGSAVLPSRLTLQVDEVASNLSALIRDVL 157
               +  GK L++   ++  ++D+ P  + A GSAVL ++ T++  E  +  SAL +   
Sbjct: 135 SIAGYAEGKCLIVQNAEEAALIDL-PSSLSANGSAVLIAQTTIKESEYEAIASALKK--- 190

Query: 158 DGELVMETHTRIPGRVNLLGIFKKHIVATSECQFTFSVLAFKIQS 202
                         R++ L +F     ATS+ Q     LA+++ +
Sbjct: 191 --------------RISDLKVFNTICPATSDRQAALKKLAYEVDA 221


>sp|O28980|Y1289_ARCFU Putative GTPase AF_1289 OS=Archaeoglobus fulgidus (strain ATCC
           49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
           GN=AF_1289 PE=3 SV=1
          Length = 346

 Score = 32.0 bits (71), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 9/47 (19%)

Query: 103 GSGKSLLLY--------RGKQVGVVDIDPGLIPARGSAVLPSRLTLQ 141
           G GKS L+         RGK+VG++ IDPG  P  G A+L  RL L 
Sbjct: 56  GVGKSTLVSKLTEEFRRRGKKVGIIAIDPGS-PFTGGALLGDRLRLD 101


>sp|P43298|TMK1_ARATH Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana
           GN=TMK1 PE=2 SV=1
          Length = 942

 Score = 31.2 bits (69), Expect = 5.0,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 61/142 (42%), Gaps = 21/142 (14%)

Query: 63  SAKIDGIAPRVTFPAV-----DIQL----NLTLDLQILVKNRNRASFKH--GSGKSLLLY 111
           S  + GI+   T P       +IQ+    N+ + +Q+L    N  S  +  GSG   ++Y
Sbjct: 544 SVSVGGISDTYTLPGTSEVGDNIQMVEAGNMLISIQVLRSVTNNFSSDNILGSGGFGVVY 603

Query: 112 RGK-----QVGVVDIDPGLIPARGSAVLPSRLTLQVDEVASNLSALIRDVLDGELVMETH 166
           +G+     ++ V  ++ G+I  +G A   S + +       +L  L+   LDG   +  +
Sbjct: 604 KGELHDGTKIAVKRMENGVIAGKGFAEFKSEIAVLTKVRHRHLVTLLGYCLDGNEKLLVY 663

Query: 167 TRIPGRVNLLGIFKKHIVATSE 188
             +P      G   +H+   SE
Sbjct: 664 EYMPQ-----GTLSRHLFEWSE 680


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.327    0.141    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,414,749
Number of Sequences: 539616
Number of extensions: 2457008
Number of successful extensions: 8778
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 8775
Number of HSP's gapped (non-prelim): 14
length of query: 211
length of database: 191,569,459
effective HSP length: 112
effective length of query: 99
effective length of database: 131,132,467
effective search space: 12982114233
effective search space used: 12982114233
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (27.3 bits)