Query 028279
Match_columns 211
No_of_seqs 111 out of 721
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 09:03:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028279.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028279hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03160 uncharacterized prote 100.0 1.3E-47 2.9E-52 317.0 27.9 202 8-211 17-219 (219)
2 PF03168 LEA_2: Late embryogen 99.5 3.5E-14 7.5E-19 102.8 9.1 97 89-189 1-101 (101)
3 smart00769 WHy Water Stress an 98.9 1.6E-08 3.6E-13 73.7 10.9 85 80-168 11-97 (100)
4 PF07092 DUF1356: Protein of u 98.6 1.3E-05 2.8E-10 66.8 18.5 113 19-139 67-180 (238)
5 COG5608 LEA14-like dessication 98.0 0.0013 2.8E-08 51.1 16.0 88 85-177 51-140 (161)
6 PF12751 Vac7: Vacuolar segreg 97.7 0.00013 2.9E-09 64.5 7.5 89 21-118 294-382 (387)
7 PLN03160 uncharacterized prote 94.7 0.048 1E-06 45.3 4.4 116 9-132 22-146 (219)
8 PF06072 Herpes_US9: Alphaherp 91.1 0.067 1.5E-06 34.9 0.1 19 18-36 24-42 (60)
9 PF14927 Neurensin: Neurensin 90.8 0.22 4.8E-06 38.4 2.7 25 34-60 51-75 (140)
10 PRK05529 cell division protein 89.5 0.61 1.3E-05 39.6 4.6 49 56-104 58-128 (255)
11 PRK10893 lipopolysaccharide ex 83.9 19 0.00041 29.2 10.3 20 53-72 37-56 (192)
12 TIGR02588 conserved hypothetic 83.6 4 8.7E-05 30.7 5.7 36 33-68 9-45 (122)
13 COG1580 FliL Flagellar basal b 82.3 6.6 0.00014 31.0 6.8 26 27-52 17-42 (159)
14 PF11906 DUF3426: Protein of u 82.3 16 0.00035 27.9 9.0 53 86-138 70-134 (149)
15 PF11395 DUF2873: Protein of u 81.7 0.53 1.1E-05 27.8 0.3 25 32-56 12-36 (43)
16 PRK05696 fliL flagellar basal 80.0 1.8 3.9E-05 34.4 2.9 25 89-115 77-101 (170)
17 PRK08455 fliL flagellar basal 69.7 6 0.00013 31.9 3.5 9 7-15 1-9 (182)
18 PF14155 DUF4307: Domain of un 68.5 45 0.00097 24.6 10.3 58 49-121 23-82 (112)
19 PF04790 Sarcoglycan_1: Sarcog 67.9 69 0.0015 27.4 9.8 17 80-96 82-98 (264)
20 PRK15136 multidrug efflux syst 64.2 3.5 7.7E-05 37.0 1.3 16 7-22 1-16 (390)
21 PF15145 DUF4577: Domain of un 63.4 8.1 0.00018 28.6 2.8 37 18-55 53-89 (128)
22 PF11837 DUF3357: Domain of un 62.8 2.4 5.3E-05 31.1 0.0 7 9-15 12-18 (106)
23 PF14812 PBP1_TM: Transmembran 58.4 0.57 1.2E-05 32.8 -3.8 9 10-18 48-56 (81)
24 PF06919 Phage_T4_Gp30_7: Phag 58.2 26 0.00057 25.7 4.6 40 94-133 40-80 (121)
25 COG4698 Uncharacterized protei 55.5 5.6 0.00012 32.0 0.9 26 47-72 29-57 (197)
26 PF09865 DUF2092: Predicted pe 54.1 47 0.001 27.5 6.2 38 80-117 35-74 (214)
27 PF12505 DUF3712: Protein of u 53.6 31 0.00067 25.6 4.7 24 85-108 101-124 (125)
28 PF14874 PapD-like: Flagellar- 53.0 76 0.0017 22.1 7.6 52 85-139 21-72 (102)
29 PRK12785 fliL flagellar basal 51.7 1.2E+02 0.0025 23.9 8.0 16 100-115 86-101 (166)
30 PRK07021 fliL flagellar basal 51.6 40 0.00086 26.4 5.2 16 100-115 78-93 (162)
31 PRK06531 yajC preprotein trans 51.2 7.4 0.00016 29.0 0.9 11 47-57 15-25 (113)
32 PF11322 DUF3124: Protein of u 50.2 52 0.0011 24.9 5.3 49 84-135 23-74 (125)
33 PHA03093 EEV glycoprotein; Pro 49.6 6.5 0.00014 31.6 0.4 25 92-116 96-120 (185)
34 PRK10807 paraquat-inducible pr 47.7 22 0.00047 33.6 3.7 25 47-71 34-58 (547)
35 PF00927 Transglut_C: Transglu 45.5 64 0.0014 23.0 5.2 56 84-139 15-75 (107)
36 COG1589 FtsQ Cell division sep 44.2 10 0.00022 32.3 0.8 25 46-70 47-71 (269)
37 PF07423 DUF1510: Protein of u 44.2 11 0.00023 31.4 0.9 10 25-34 11-20 (217)
38 PF06781 UPF0233: Uncharacteri 43.3 32 0.00069 24.4 3.1 25 27-51 30-54 (87)
39 PF10907 DUF2749: Protein of u 40.8 29 0.00064 23.1 2.4 16 40-55 13-28 (66)
40 KOG3950 Gamma/delta sarcoglyca 38.4 34 0.00074 29.0 3.0 21 78-98 102-123 (292)
41 COG3354 FlaG Putative archaeal 35.1 59 0.0013 25.3 3.6 32 84-115 68-99 (154)
42 PF07423 DUF1510: Protein of u 34.2 14 0.0003 30.7 0.1 18 19-36 8-26 (217)
43 PTZ00382 Variant-specific surf 33.9 43 0.00093 24.0 2.6 14 41-54 81-94 (96)
44 COG4736 CcoQ Cbb3-type cytochr 33.0 19 0.00042 23.7 0.6 12 46-57 24-35 (60)
45 PF10830 DUF2553: Protein of u 31.8 90 0.002 21.5 3.7 29 95-123 7-35 (76)
46 TIGR01478 STEVOR variant surfa 30.1 19 0.00042 31.1 0.3 13 33-45 264-276 (295)
47 PF09307 MHC2-interact: CLIP, 29.8 18 0.00038 27.0 0.0 30 25-55 30-59 (114)
48 PF05545 FixQ: Cbb3-type cytoc 29.5 23 0.00051 21.8 0.6 9 48-56 26-34 (49)
49 PTZ00370 STEVOR; Provisional 29.3 21 0.00044 31.0 0.3 15 32-46 259-273 (296)
50 PRK05886 yajC preprotein trans 29.0 21 0.00045 26.4 0.2 12 46-57 16-27 (109)
51 PF14283 DUF4366: Domain of un 27.6 45 0.00097 27.7 2.0 12 48-59 179-190 (218)
52 PF12166 DUF3595: Protein of u 27.3 1.2E+02 0.0027 27.3 5.0 27 9-35 44-71 (422)
53 COG3121 FimC P pilus assembly 27.1 1.1E+02 0.0024 25.5 4.4 42 89-135 166-207 (235)
54 PF06024 DUF912: Nucleopolyhed 27.0 1.1E+02 0.0024 22.0 3.8 6 47-52 81-86 (101)
55 PF15012 DUF4519: Domain of un 27.0 57 0.0012 21.1 2.0 11 45-55 46-56 (56)
56 PF09911 DUF2140: Uncharacteri 26.8 81 0.0018 25.4 3.4 13 45-57 19-31 (187)
57 PF12321 DUF3634: Protein of u 26.5 30 0.00065 25.5 0.7 16 46-61 11-28 (108)
58 PTZ00116 signal peptidase; Pro 26.2 2E+02 0.0044 23.3 5.5 19 54-72 36-54 (185)
59 PF15018 InaF-motif: TRP-inter 26.1 1.2E+02 0.0027 18.0 3.2 29 25-53 3-32 (38)
60 PF13464 DUF4115: Domain of un 25.6 1.6E+02 0.0035 19.6 4.3 27 92-118 34-61 (77)
61 PF14055 NVEALA: NVEALA protei 25.6 36 0.00077 22.4 0.9 26 44-69 15-40 (65)
62 PF09624 DUF2393: Protein of u 25.4 3E+02 0.0065 20.8 8.4 36 85-120 63-98 (149)
63 PF03923 Lipoprotein_16: Uncha 25.2 3.2E+02 0.0069 21.0 6.8 50 54-103 67-117 (159)
64 PF07705 CARDB: CARDB; InterP 25.2 2.2E+02 0.0048 19.1 6.8 51 86-140 21-71 (101)
65 PF11239 DUF3040: Protein of u 24.7 60 0.0013 22.3 2.0 6 7-12 1-6 (82)
66 PRK10775 cell division protein 24.6 52 0.0011 28.2 2.0 18 87-104 108-125 (276)
67 PF10969 DUF2771: Protein of u 24.2 66 0.0014 25.3 2.3 9 54-62 32-40 (161)
68 COG1862 YajC Preprotein transl 23.5 38 0.00083 24.5 0.8 14 44-57 19-32 (97)
69 PF04478 Mid2: Mid2 like cell 23.5 53 0.0012 25.8 1.7 30 89-118 89-122 (154)
70 PF11797 DUF3324: Protein of u 23.4 3.3E+02 0.0071 20.6 11.5 67 56-135 27-95 (140)
71 COG3008 PqiB Paraquat-inducibl 23.3 1.2E+02 0.0025 28.8 4.0 57 9-70 4-60 (553)
72 COG5353 Uncharacterized protei 23.2 72 0.0016 25.0 2.3 31 25-55 4-34 (161)
73 PRK08455 fliL flagellar basal 22.5 77 0.0017 25.4 2.5 9 49-57 39-47 (182)
74 PF12505 DUF3712: Protein of u 22.4 3.2E+02 0.0069 20.0 7.7 59 115-178 2-62 (125)
75 PF06835 LptC: Lipopolysacchar 22.2 3.5E+02 0.0075 20.4 6.2 45 82-126 51-95 (176)
76 PRK13159 cytochrome c-type bio 22.0 2.2E+02 0.0048 22.3 4.9 26 97-122 84-110 (155)
77 TIGR00739 yajC preprotein tran 21.9 60 0.0013 22.6 1.5 14 44-57 13-26 (84)
78 COG3736 VirB8 Type IV secretor 21.8 51 0.0011 27.8 1.3 34 25-59 41-74 (239)
79 PRK02251 putative septation in 21.2 1.1E+02 0.0023 21.7 2.7 29 28-57 32-60 (87)
80 smart00084 NMU Neuromedin U. N 20.9 58 0.0013 17.5 1.0 8 49-56 18-25 (26)
81 PF04573 SPC22: Signal peptida 20.9 2.1E+02 0.0045 22.9 4.6 11 52-62 32-42 (175)
82 PF13179 DUF4006: Family of un 20.2 1.1E+02 0.0025 20.4 2.5 19 31-49 15-33 (66)
No 1
>PLN03160 uncharacterized protein; Provisional
Probab=100.00 E-value=1.3e-47 Score=317.01 Aligned_cols=202 Identities=31% Similarity=0.491 Sum_probs=180.4
Q ss_pred Ccchhh-hhhhhcccCCcceeeehhhHHHHHHHHHHHHHhheeEEeeeCCCeEEEEEEEEeeeecccCCCCcceeEeEEE
Q 028279 8 TEHNEE-QVLLLRRRRRRCCLIATGVAILLLLAFFIIILILALTVFKTKQPITELQSAKIDGIAPRVTFPAVDIQLNLTL 86 (211)
Q Consensus 8 ~~~~~~-~~~~~~~~~~r~c~~c~~~~~~~lv~l~~v~~~~~~lv~rP~~P~~~v~s~~v~~f~~~~~~p~~~~~ln~~~ 86 (211)
+++||| ++++++++++|+|.+||+|++++++++++++++++|++||||+|+|+++++++++|+++.+ +..+..+|+++
T Consensus 17 ~~~d~~~~~~~~~~~~r~~~~~c~~~~~a~~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~-~~~~~~~n~tl 95 (219)
T PLN03160 17 LRSDEEEATNHLKKTRRRNCIKCCGCITATLLILATTILVLVFTVFRVKDPVIKMNGVTVTKLELINN-TTLRPGTNITL 95 (219)
T ss_pred ccCchhhcCcchhccccccceEEHHHHHHHHHHHHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccC-CCCceeEEEEE
Confidence 356666 5566666777788888878777777778888888999999999999999999999998632 23357899999
Q ss_pred EEEEEEECCCeeeEEEcCcEEEEEECCEEeeeeEcCCCcccCCceEEEeeEEEEeecccccchHHHHhhhcCCeEEEEEE
Q 028279 87 DLQILVKNRNRASFKHGSGKSLLLYRGKQVGVVDIDPGLIPARGSAVLPSRLTLQVDEVASNLSALIRDVLDGELVMETH 166 (211)
Q Consensus 87 ~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~~p~f~q~~~~t~~~~~~~~~~~~~~~~~~~~l~~d~~~g~v~l~~~ 166 (211)
+++++++|||+++|+|++++++++|+|+.+|++.+|+|+|++++++.+++++.+.+.++.++ ++|.+|.++|.++|+++
T Consensus 96 ~~~v~v~NPN~~~~~Y~~~~~~v~Y~g~~vG~a~~p~g~~~ar~T~~l~~tv~~~~~~~~~~-~~L~~D~~~G~v~l~~~ 174 (219)
T PLN03160 96 IADVSVKNPNVASFKYSNTTTTIYYGGTVVGEARTPPGKAKARRTMRMNVTVDIIPDKILSV-PGLLTDISSGLLNMNSY 174 (219)
T ss_pred EEEEEEECCCceeEEEcCeEEEEEECCEEEEEEEcCCcccCCCCeEEEEEEEEEEeceeccc-hhHHHHhhCCeEEEEEE
Confidence 99999999999999999999999999999999999999999999999999988888776654 68999999999999999
Q ss_pred EEEEEEEEEeeEEEeeEEEEEEEEEEEecccceEEeccccccccC
Q 028279 167 TRIPGRVNLLGIFKKHIVATSECQFTFSVLAFKIQSQKCKNKARF 211 (211)
Q Consensus 167 ~~v~~rv~v~~~~~~~~~~~v~C~~~v~~~~~~~~~~~C~~k~~~ 211 (211)
++++||++++++++++++++++|++.|+..+..+++++|+.|++|
T Consensus 175 ~~v~gkVkv~~i~k~~v~~~v~C~v~V~~~~~~i~~~~C~~~~~~ 219 (219)
T PLN03160 175 TRIGGKVKILKIIKKHVVVKMNCTMTVNITSQAIQGQKCKRHVDL 219 (219)
T ss_pred EEEEEEEEEEEEEEEEEEEEEEeEEEEECCCCEEeccEecccccC
Confidence 999999999999999999999999999999999999999999886
No 2
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=99.55 E-value=3.5e-14 Score=102.75 Aligned_cols=97 Identities=24% Similarity=0.364 Sum_probs=73.4
Q ss_pred EEEEECCCeeeEEEcCcEEEEEECCEEee-eeEcCCCcccCCceEEEeeEEEEeecccccchHHHHhhhcCCeEEEEEEE
Q 028279 89 QILVKNRNRASFKHGSGKSLLLYRGKQVG-VVDIDPGLIPARGSAVLPSRLTLQVDEVASNLSALIRDVLDGELVMETHT 167 (211)
Q Consensus 89 ~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg-~~~~p~f~q~~~~t~~~~~~~~~~~~~~~~~~~~l~~d~~~g~v~l~~~~ 167 (211)
+++++|||.++++|++.+++++|+|..+| ....++|+|++++++.+.+++.++...+ ...+.++. +|..++++..
T Consensus 1 ~l~v~NPN~~~i~~~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v~~~~~~l---~~~l~~~~-~~~~~~~v~~ 76 (101)
T PF03168_consen 1 TLSVRNPNSFGIRYDSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPVSVDYSDL---PRLLKDLL-AGRVPFDVTY 76 (101)
T ss_dssp EEEEEESSSS-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEEEEEEHHHH---HHHHHHHH-HTTSCEEEEE
T ss_pred CEEEECCCceeEEEeCEEEEEEECCEEEECccccCCeEECCCCcEEEEEEEEEcHHHH---HHHHHhhh-ccccceEEEE
Confidence 57999999999999999999999999999 7888999999999999998887776555 23455555 6677778888
Q ss_pred EEEEEEEEe-eE--EEeeEEEEEEE
Q 028279 168 RIPGRVNLL-GI--FKKHIVATSEC 189 (211)
Q Consensus 168 ~v~~rv~v~-~~--~~~~~~~~v~C 189 (211)
++++++++. +. .+.++.++..|
T Consensus 77 ~~~g~~~v~~~~~~~~~~v~~~~~~ 101 (101)
T PF03168_consen 77 RIRGTFKVLGTPIFGSVRVPVSCEC 101 (101)
T ss_dssp EEEEEEE-EE-TTTSCEEEEEEEEE
T ss_pred EEEEEEEEcccceeeeEEEeEEeEC
Confidence 899999953 33 34444444444
No 3
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=98.94 E-value=1.6e-08 Score=73.68 Aligned_cols=85 Identities=24% Similarity=0.311 Sum_probs=68.3
Q ss_pred eeEeEEEEEEEEEECCCeeeEEEcCcEEEEEECCEEeeeeEcC-CCcccCCceEEEeeEEEEeecccccchHHHHhhhcC
Q 028279 80 IQLNLTLDLQILVKNRNRASFKHGSGKSLLLYRGKQVGVVDID-PGLIPARGSAVLPSRLTLQVDEVASNLSALIRDVLD 158 (211)
Q Consensus 80 ~~ln~~~~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~~p-~f~q~~~~t~~~~~~~~~~~~~~~~~~~~l~~d~~~ 158 (211)
..++.++.+.++++|||.+++.|++.+.+++|+|..+|++..+ ++.+|+++++.+.+++++. .. +...+..++.+
T Consensus 11 ~~~~~~~~l~l~v~NPN~~~l~~~~~~y~l~~~g~~v~~g~~~~~~~ipa~~~~~v~v~~~~~-~~---~~~~~~~~l~~ 86 (100)
T smart00769 11 SGLEIEIVLKVKVQNPNPFPIPVNGLSYDLYLNGVELGSGEIPDSGTLPGNGRTVLDVPVTVN-LF---LAEALIWHIAN 86 (100)
T ss_pred cceEEEEEEEEEEECCCCCccccccEEEEEEECCEEEEEEEcCCCcEECCCCcEEEEEEEEee-hh---HhHHHHHhhcc
Confidence 4567788999999999999999999999999999999999996 7999999999999998873 22 23456677765
Q ss_pred C-eEEEEEEEE
Q 028279 159 G-ELVMETHTR 168 (211)
Q Consensus 159 g-~v~l~~~~~ 168 (211)
| .++++++++
T Consensus 87 ~~~~~y~l~g~ 97 (100)
T smart00769 87 GEEIPYRLDGK 97 (100)
T ss_pred CCCccEEEEEE
Confidence 5 355554433
No 4
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=98.58 E-value=1.3e-05 Score=66.77 Aligned_cols=113 Identities=14% Similarity=0.106 Sum_probs=74.8
Q ss_pred cccCCcceeeehhhHHHHHHHHHHHHHhheeEEeeeCCCeEEEEEEEEeeeecccCCCCcceeEeEEEEEEEEEECCCee
Q 028279 19 RRRRRRCCLIATGVAILLLLAFFIIILILALTVFKTKQPITELQSAKIDGIAPRVTFPAVDIQLNLTLDLQILVKNRNRA 98 (211)
Q Consensus 19 ~~~~~r~c~~c~~~~~~~lv~l~~v~~~~~~lv~rP~~P~~~v~s~~v~~f~~~~~~p~~~~~ln~~~~~~v~v~NPN~~ 98 (211)
+|-+.||.+++..+. +++.+.+..+++|+|+ ||.-.++-.++......++.+ ...+..++.-.+.+.|||++
T Consensus 67 qRLKPrRTklyV~~s--V~~CLl~~~L~iFFLf--PRsV~v~~~gv~s~~V~f~~~----~~~v~l~itn~lNIsN~NFy 138 (238)
T PF07092_consen 67 QRLKPRRTKLYVFLS--VLLCLLLSGLVIFFLF--PRSVTVSPVGVKSVTVSFNPD----KSTVQLNITNTLNISNPNFY 138 (238)
T ss_pred cccCCceeEEEeeHH--HHHHHHHHHheEEEEe--CcEEEEecCcEEEEEEEEeCC----CCEEEEEEEEEEEccCCCEE
Confidence 344556655544332 2222333333344444 876655555544444444311 24567788889999999999
Q ss_pred eEEEcCcEEEEEECCEEeeeeEcCCC-cccCCceEEEeeEEE
Q 028279 99 SFKHGSGKSLLLYRGKQVGVVDIDPG-LIPARGSAVLPSRLT 139 (211)
Q Consensus 99 ~i~y~~~~~~v~Y~g~~lg~~~~p~f-~q~~~~t~~~~~~~~ 139 (211)
.+.-.+.++++.|....+|.+..... ..+|++.+.+..++.
T Consensus 139 ~V~Vt~~s~qv~~~~~VVG~~~~~~~~~I~Prs~~q~~~tV~ 180 (238)
T PF07092_consen 139 PVTVTNLSIQVLYMKTVVGKGKNSNITVIGPRSSKQVNYTVK 180 (238)
T ss_pred EEEEEeEEEEEEEEEeEEeeeEecceEEecccCCceEEEEee
Confidence 99999999999999999999988754 678888888776554
No 5
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=97.97 E-value=0.0013 Score=51.13 Aligned_cols=88 Identities=15% Similarity=0.202 Sum_probs=67.1
Q ss_pred EEEEEEEEECCCeeeEEEcCcEEEEEECCEEeeeeEc-CCCcccCCceEEEeeEEEEeecccccchHHHHhhhcCCeE-E
Q 028279 85 TLDLQILVKNRNRASFKHGSGKSLLLYRGKQVGVVDI-DPGLIPARGSAVLPSRLTLQVDEVASNLSALIRDVLDGEL-V 162 (211)
Q Consensus 85 ~~~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~~-p~f~q~~~~t~~~~~~~~~~~~~~~~~~~~l~~d~~~g~v-~ 162 (211)
.+-.++.++|||-+.+-..+.+..++-+|.++|.+.. .++..++++...+++++.++...+. +.+...+++|+- +
T Consensus 51 EiV~t~KiyNPN~fPipVtgl~y~vymN~Iki~eG~~~k~~~v~p~S~~tvdv~l~~d~~~~k---e~w~~hi~ngErs~ 127 (161)
T COG5608 51 EIVGTLKIYNPNPFPIPVTGLQYAVYMNDIKIGEGEILKGTTVPPNSRETVDVPLRLDNSKIK---EWWVTHIENGERST 127 (161)
T ss_pred EEEEEEEecCCCCcceeeeceEEEEEEcceEeeccccccceEECCCCeEEEEEEEEEehHHHH---HHHHHHhhccCccc
Confidence 5677899999999999999999999999999999986 5699999999999999988765541 235556766643 3
Q ss_pred EEEEEEEEEEEEEee
Q 028279 163 METHTRIPGRVNLLG 177 (211)
Q Consensus 163 l~~~~~v~~rv~v~~ 177 (211)
++.+ +.+.+++++
T Consensus 128 Ir~~--i~~~v~vg~ 140 (161)
T COG5608 128 IRVR--IKGVVKVGG 140 (161)
T ss_pred EEEE--EEEEEEEcc
Confidence 4433 445555544
No 6
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=97.70 E-value=0.00013 Score=64.46 Aligned_cols=89 Identities=21% Similarity=0.288 Sum_probs=51.0
Q ss_pred cCCcceeeehhhHHHHHHHHHHHHHhheeEEeeeCCCeEEEEEEEEeeeecccCCCCcceeEeEEEEEEEEEECCCeeeE
Q 028279 21 RRRRCCLIATGVAILLLLAFFIIILILALTVFKTKQPITELQSAKIDGIAPRVTFPAVDIQLNLTLDLQILVKNRNRASF 100 (211)
Q Consensus 21 ~~~r~c~~c~~~~~~~lv~l~~v~~~~~~lv~rP~~P~~~v~s~~v~~f~~~~~~p~~~~~ln~~~~~~v~v~NPN~~~i 100 (211)
+++..|.++.+|+++.+++|+++.+++ -++|--.+|--.|+=+.+++.-.+ .-.+=|+++|.+.|||.+.|
T Consensus 294 r~r~~~~r~~~c~~~~i~~lL~ig~~~-gFv~AttKpL~~v~v~~I~NVlaS--------~qELmfdl~V~A~NPn~~~V 364 (387)
T PF12751_consen 294 RQRSWFSRFASCIYLSILLLLVIGFAI-GFVFATTKPLTDVQVVSIQNVLAS--------EQELMFDLTVEAFNPNWFTV 364 (387)
T ss_pred ccccHHhhhhHHHHHHHHHHHHHHHHH-HhhhhcCcccccceEEEeeeeeec--------cceEEEeeEEEEECCCeEEE
Confidence 344455554444333322222222222 234445556444444444543221 12234788999999999999
Q ss_pred EEcCcEEEEEECCEEeee
Q 028279 101 KHGSGKSLLLYRGKQVGV 118 (211)
Q Consensus 101 ~y~~~~~~v~Y~g~~lg~ 118 (211)
..++.+++++-+-..+|.
T Consensus 365 ~I~d~dldIFAKS~yvg~ 382 (387)
T PF12751_consen 365 TIDDMDLDIFAKSRYVGT 382 (387)
T ss_pred EeccceeeeEecCCccCc
Confidence 999999999987666653
No 7
>PLN03160 uncharacterized protein; Provisional
Probab=94.70 E-value=0.048 Score=45.29 Aligned_cols=116 Identities=11% Similarity=0.088 Sum_probs=61.1
Q ss_pred cchhhhhhhhcccCCcceeeehhhHHHHHHHHHHHHHhheeEEeeeCC--CeEEEEEEEEeeeecccCCCCcceeE----
Q 028279 9 EHNEEQVLLLRRRRRRCCLIATGVAILLLLAFFIIILILALTVFKTKQ--PITELQSAKIDGIAPRVTFPAVDIQL---- 82 (211)
Q Consensus 9 ~~~~~~~~~~~~~~~r~c~~c~~~~~~~lv~l~~v~~~~~~lv~rP~~--P~~~v~s~~v~~f~~~~~~p~~~~~l---- 82 (211)
|+..++....+||++.+|..|++.+++++++++++++.+.+-.=.|+- -.++++++.++.-.. . .+..+.++
T Consensus 22 ~~~~~~~~~~~r~~~~~c~~~~~a~~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~-~-~~~~n~tl~~~v 99 (219)
T PLN03160 22 EEATNHLKKTRRRNCIKCCGCITATLLILATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTT-L-RPGTNITLIADV 99 (219)
T ss_pred hhcCcchhccccccceEEHHHHHHHHHHHHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCC-C-ceeEEEEEEEEE
Confidence 345566666678887777777777666666655555556666677774 566666666542000 0 01111122
Q ss_pred ---eEEEEEEEEEECCCeeeEEEcCcEEEEEECCEEeeeeEcCCCcccCCceE
Q 028279 83 ---NLTLDLQILVKNRNRASFKHGSGKSLLLYRGKQVGVVDIDPGLIPARGSA 132 (211)
Q Consensus 83 ---n~~~~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~~p~f~q~~~~t~ 132 (211)
|-+. +.+. +..-...++|++..+. ...+..+..++..+..-+.+
T Consensus 100 ~v~NPN~-~~~~-Y~~~~~~v~Y~g~~vG----~a~~p~g~~~ar~T~~l~~t 146 (219)
T PLN03160 100 SVKNPNV-ASFK-YSNTTTTIYYGGTVVG----EARTPPGKAKARRTMRMNVT 146 (219)
T ss_pred EEECCCc-eeEE-EcCeEEEEEECCEEEE----EEEcCCcccCCCCeEEEEEE
Confidence 1112 2223 2323677888776543 23445555555555444444
No 8
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=91.07 E-value=0.067 Score=34.92 Aligned_cols=19 Identities=37% Similarity=0.697 Sum_probs=11.2
Q ss_pred hcccCCcceeeehhhHHHH
Q 028279 18 LRRRRRRCCLIATGVAILL 36 (211)
Q Consensus 18 ~~~~~~r~c~~c~~~~~~~ 36 (211)
..|+|+|+|.++.++++++
T Consensus 24 ~~r~RrRrc~~~v~~v~~~ 42 (60)
T PF06072_consen 24 ASRRRRRRCRLAVAIVFAV 42 (60)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455667776666555444
No 9
>PF14927 Neurensin: Neurensin
Probab=90.76 E-value=0.22 Score=38.44 Aligned_cols=25 Identities=28% Similarity=0.175 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhheeEEeeeCCCeEE
Q 028279 34 ILLLLAFFIIILILALTVFKTKQPITE 60 (211)
Q Consensus 34 ~~~lv~l~~v~~~~~~lv~rP~~P~~~ 60 (211)
.+++++++++++++.|++ |++++..
T Consensus 51 g~l~Ll~Gi~~l~vgY~v--P~~~e~~ 75 (140)
T PF14927_consen 51 GLLLLLLGIVALTVGYLV--PPKIEVF 75 (140)
T ss_pred HHHHHHHHHHHHHhhccc--CCcceec
Confidence 344556777788888887 7666544
No 10
>PRK05529 cell division protein FtsQ; Provisional
Probab=89.50 E-value=0.61 Score=39.58 Aligned_cols=49 Identities=10% Similarity=-0.023 Sum_probs=28.6
Q ss_pred CCeEEEEEEEEeeeeccc--------CCCCcceeEeEE--------------EEEEEEEECCCeeeEEEcC
Q 028279 56 QPITELQSAKIDGIAPRV--------TFPAVDIQLNLT--------------LDLQILVKNRNRASFKHGS 104 (211)
Q Consensus 56 ~P~~~v~s~~v~~f~~~~--------~~p~~~~~ln~~--------------~~~~v~v~NPN~~~i~y~~ 104 (211)
.|.|.++++++++-.... ......+.+..+ =++.++-+.||.+.|+-.+
T Consensus 58 Sp~~~v~~I~V~Gn~~vs~~eI~~~~~~~~g~~l~~vd~~~~~~~l~~~P~V~sa~V~r~~P~tl~I~V~E 128 (255)
T PRK05529 58 SPLLALRSIEVAGNMRVKPQDIVAALRDQFGKPLPLVDPETVRKKLAAFPLIRSYSVESKPPGTIVVRVVE 128 (255)
T ss_pred CCceEEEEEEEECCccCCHHHHHHHhcccCCCcceeECHHHHHHHHhcCCCEeEEEEEEeCCCEEEEEEEE
Confidence 489999999998754321 000001111111 2567888999977776544
No 11
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=83.93 E-value=19 Score=29.18 Aligned_cols=20 Identities=15% Similarity=0.194 Sum_probs=16.7
Q ss_pred eeCCCeEEEEEEEEeeeecc
Q 028279 53 KTKQPITELQSAKIDGIAPR 72 (211)
Q Consensus 53 rP~~P~~~v~s~~v~~f~~~ 72 (211)
.++.|+|.+++++...|+..
T Consensus 37 ~~~~Pdy~~~~~~~~~yd~~ 56 (192)
T PRK10893 37 NNNDPTYQSQHTDTVVYNPE 56 (192)
T ss_pred CCCCCCEEEeccEEEEECCC
Confidence 46779999999999888764
No 12
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=83.60 E-value=4 Score=30.74 Aligned_cols=36 Identities=17% Similarity=0.231 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHH-hheeEEeeeCCCeEEEEEEEEee
Q 028279 33 AILLLLAFFIIIL-ILALTVFKTKQPITELQSAKIDG 68 (211)
Q Consensus 33 ~~~~lv~l~~v~~-~~~~lv~rP~~P~~~v~s~~v~~ 68 (211)
.+..+++++++.+ +-.|+.-+++.|.+++......+
T Consensus 9 ~Is~~ill~viglv~y~~l~~~~~pp~l~v~~~~~~r 45 (122)
T TIGR02588 9 GISTLILAAMFGLVAYDWLRYSNKAAVLEVAPAEVER 45 (122)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCeEEEeehheeE
Confidence 3333344443332 23467777888999887766544
No 13
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=82.34 E-value=6.6 Score=30.99 Aligned_cols=26 Identities=8% Similarity=-0.166 Sum_probs=12.2
Q ss_pred eeehhhHHHHHHHHHHHHHhheeEEe
Q 028279 27 LIATGVAILLLLAFFIIILILALTVF 52 (211)
Q Consensus 27 ~~c~~~~~~~lv~l~~v~~~~~~lv~ 52 (211)
++++.+.+++++++++..+..+|+..
T Consensus 17 ~~~I~liv~ivl~~~a~~~~~~~~~~ 42 (159)
T COG1580 17 SLWILLIVLIVLLALAGAGYFFWFGS 42 (159)
T ss_pred eeehHHHHHHHHHHHHHHHHHHhhhc
Confidence 34444444444444444444566664
No 14
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=82.25 E-value=16 Score=27.86 Aligned_cols=53 Identities=19% Similarity=0.129 Sum_probs=40.1
Q ss_pred EEEEEEEECCCeeeEEEcCcEEEEE-ECCEEeeeeEc-C----------CCcccCCceEEEeeEE
Q 028279 86 LDLQILVKNRNRASFKHGSGKSLLL-YRGKQVGVVDI-D----------PGLIPARGSAVLPSRL 138 (211)
Q Consensus 86 ~~~~v~v~NPN~~~i~y~~~~~~v~-Y~g~~lg~~~~-p----------~f~q~~~~t~~~~~~~ 138 (211)
+.++.+++|.......|-..+++++ -+|+.+++-.+ | .-..+++++..+...+
T Consensus 70 l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~r~~~P~~yl~~~~~~~~~l~pg~~~~~~~~~ 134 (149)
T PF11906_consen 70 LVVSGTIRNRADFPQALPALELSLLDAQGQPLARRVFTPADYLPPGLAAQAGLPPGESVPFRLRL 134 (149)
T ss_pred EEEEEEEEeCCCCcccCceEEEEEECCCCCEEEEEEEChHHhcccccccccccCCCCeEEEEEEe
Confidence 4678899999999999999999988 67888887776 4 2345666666665444
No 15
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=81.69 E-value=0.53 Score=27.81 Aligned_cols=25 Identities=24% Similarity=0.378 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHhheeEEeeeCC
Q 028279 32 VAILLLLAFFIIILILALTVFKTKQ 56 (211)
Q Consensus 32 ~~~~~lv~l~~v~~~~~~lv~rP~~ 56 (211)
|++++++++.++.++++|+++--++
T Consensus 12 c~l~~llflv~imliif~f~le~qd 36 (43)
T PF11395_consen 12 CFLSFLLFLVIIMLIIFWFSLEIQD 36 (43)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4455666777777778888765443
No 16
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=79.95 E-value=1.8 Score=34.38 Aligned_cols=25 Identities=20% Similarity=0.102 Sum_probs=13.1
Q ss_pred EEEEECCCeeeEEEcCcEEEEEECCEE
Q 028279 89 QILVKNRNRASFKHGSGKSLLLYRGKQ 115 (211)
Q Consensus 89 ~v~v~NPN~~~i~y~~~~~~v~Y~g~~ 115 (211)
++....++ +-+|=...+++.+++..
T Consensus 77 vvNl~~~~--~~ryLkv~i~l~~~d~~ 101 (170)
T PRK05696 77 VFNVPGNG--RDRLVQIKVQLMVRGSD 101 (170)
T ss_pred EEEecCCC--CceEEEEEEEEEECCHH
Confidence 33334444 34566666666666543
No 17
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=69.73 E-value=6 Score=31.88 Aligned_cols=9 Identities=33% Similarity=0.590 Sum_probs=5.3
Q ss_pred CCcchhhhh
Q 028279 7 MTEHNEEQV 15 (211)
Q Consensus 7 ~~~~~~~~~ 15 (211)
|-+|++++.
T Consensus 1 MAee~~~~~ 9 (182)
T PRK08455 1 MAEEQENEA 9 (182)
T ss_pred CCcchhhhh
Confidence 666666543
No 18
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=68.51 E-value=45 Score=24.56 Aligned_cols=58 Identities=24% Similarity=0.302 Sum_probs=27.8
Q ss_pred eEEee-eCCCeEEEEEEEEeeeecccCCCCcceeEeEEEEEEEEEECCCe-eeEEEcCcEEEEEECCEEeeeeEc
Q 028279 49 LTVFK-TKQPITELQSAKIDGIAPRVTFPAVDIQLNLTLDLQILVKNRNR-ASFKHGSGKSLLLYRGKQVGVVDI 121 (211)
Q Consensus 49 ~lv~r-P~~P~~~v~s~~v~~f~~~~~~p~~~~~ln~~~~~~v~v~NPN~-~~i~y~~~~~~v~Y~g~~lg~~~~ 121 (211)
|+.+. ...|.+ +.+..+|.... +..+..+|++ +- +|.. .-..... ..|++..+|.-.+
T Consensus 23 w~~~~~~~~~~v---~~~~~gf~vv~-----d~~v~v~f~V--tr-~~~~~a~C~VrA----~~~d~aeVGrreV 82 (112)
T PF14155_consen 23 WFGYSQFGSPPV---SAEVIGFEVVD-----DSTVEVTFDV--TR-DPGRPAVCIVRA----LDYDGAEVGRREV 82 (112)
T ss_pred HhhhhhccCCCc---eEEEEEEEECC-----CCEEEEEEEE--EE-CCCCCEEEEEEE----EeCCCCEEEEEEE
Confidence 44444 445555 33445555531 2355444433 22 2553 3332222 2578888886554
No 19
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=67.94 E-value=69 Score=27.38 Aligned_cols=17 Identities=12% Similarity=0.327 Sum_probs=10.7
Q ss_pred eeEeEEEEEEEEEECCC
Q 028279 80 IQLNLTLDLQILVKNRN 96 (211)
Q Consensus 80 ~~ln~~~~~~v~v~NPN 96 (211)
..+..+=+++++++|+|
T Consensus 82 l~i~s~~~v~~~~r~~~ 98 (264)
T PF04790_consen 82 LVIQSSRNVTLNARNEN 98 (264)
T ss_pred EEEEecCceEEEEecCC
Confidence 34444445677788888
No 20
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=64.18 E-value=3.5 Score=36.99 Aligned_cols=16 Identities=19% Similarity=0.208 Sum_probs=8.9
Q ss_pred CCcchhhhhhhhcccC
Q 028279 7 MTEHNEEQVLLLRRRR 22 (211)
Q Consensus 7 ~~~~~~~~~~~~~~~~ 22 (211)
|--|-|+++|.+.+||
T Consensus 1 ~~~~~~~~~~~~~~~~ 16 (390)
T PRK15136 1 MSANAETQTPQQPVKK 16 (390)
T ss_pred CCcccccCCCCCCccc
Confidence 5556677665543333
No 21
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=63.45 E-value=8.1 Score=28.63 Aligned_cols=37 Identities=14% Similarity=0.362 Sum_probs=20.9
Q ss_pred hcccCCcceeeehhhHHHHHHHHHHHHHhheeEEeeeC
Q 028279 18 LRRRRRRCCLIATGVAILLLLAFFIIILILALTVFKTK 55 (211)
Q Consensus 18 ~~~~~~r~c~~c~~~~~~~lv~l~~v~~~~~~lv~rP~ 55 (211)
.....+++++.+.+.++++++-++++.+++ |++++..
T Consensus 53 ~~sg~g~~~lffvglii~LivSLaLVsFvI-FLiiQTg 89 (128)
T PF15145_consen 53 TNSGNGSRSLFFVGLIIVLIVSLALVSFVI-FLIIQTG 89 (128)
T ss_pred CCCCCCceeehHHHHHHHHHHHHHHHHHHH-Hheeecc
Confidence 334445666666666665555566666654 4655543
No 22
>PF11837 DUF3357: Domain of unknown function (DUF3357); InterPro: IPR021792 This entry represents the N-terminal domain of beta-fructofuranosidase, whcih is involved in the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides. ; GO: 0004564 beta-fructofuranosidase activity, 0004575 sucrose alpha-glucosidase activity; PDB: 3UGG_A 3UGH_B 3UGF_B.
Probab=62.83 E-value=2.4 Score=31.06 Aligned_cols=7 Identities=14% Similarity=0.249 Sum_probs=0.0
Q ss_pred cchhhhh
Q 028279 9 EHNEEQV 15 (211)
Q Consensus 9 ~~~~~~~ 15 (211)
++++++.
T Consensus 12 ~~~~~~~ 18 (106)
T PF11837_consen 12 DSSESAP 18 (106)
T ss_dssp -------
T ss_pred CCCcccC
Confidence 3444433
No 23
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=58.45 E-value=0.57 Score=32.75 Aligned_cols=9 Identities=22% Similarity=0.124 Sum_probs=0.0
Q ss_pred chhhhhhhh
Q 028279 10 HNEEQVLLL 18 (211)
Q Consensus 10 ~~~~~~~~~ 18 (211)
|||+.|+.+
T Consensus 48 eeee~m~rK 56 (81)
T PF14812_consen 48 EEEEPMPRK 56 (81)
T ss_dssp ---------
T ss_pred hhccccccc
Confidence 344455554
No 24
>PF06919 Phage_T4_Gp30_7: Phage Gp30.7 protein; InterPro: IPR009690 This family consists of several phage Gp30.7 proteins of 121 residues in length. Family members seem to be exclusively from the T4-like viruses. The function of this family is unknown.
Probab=58.17 E-value=26 Score=25.66 Aligned_cols=40 Identities=13% Similarity=0.002 Sum_probs=31.5
Q ss_pred CCCeeeEEEcC-cEEEEEECCEEeeeeEcCCCcccCCceEE
Q 028279 94 NRNRASFKHGS-GKSLLLYRGKQVGVVDIDPGLIPARGSAV 133 (211)
Q Consensus 94 NPN~~~i~y~~-~~~~v~Y~g~~lg~~~~p~f~q~~~~t~~ 133 (211)
|||++-++|++ .++++.|.|..+--+.-..+.++.-+|..
T Consensus 40 ~pNYvf~~FEnG~tvsv~~~gs~~kI~~~Dd~r~RDLgTHP 80 (121)
T PF06919_consen 40 TPNYVFMRFENGITVSVTYNGSIFKIGLDDDHRERDLGTHP 80 (121)
T ss_pred CCCEEEEEecCCCEEEEEecCcEEEEEecCchhhcccCCCc
Confidence 99999999988 88999999987777766777666545433
No 25
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.45 E-value=5.6 Score=32.00 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=17.4
Q ss_pred heeEEeeeCCCeEEEEEEEE---eeeecc
Q 028279 47 LALTVFKTKQPITELQSAKI---DGIAPR 72 (211)
Q Consensus 47 ~~~lv~rP~~P~~~v~s~~v---~~f~~~ 72 (211)
++.+++.|+.|...+.+++= ..|+++
T Consensus 29 i~~~vlsp~ee~t~~~~a~~~~~~~fqit 57 (197)
T COG4698 29 IALFVLSPREEPTHLEDASEKSEKSFQIT 57 (197)
T ss_pred hheeeccCCCCCchhhccCcccceeEEEE
Confidence 34588899997777766654 335554
No 26
>PF09865 DUF2092: Predicted periplasmic protein (DUF2092); InterPro: IPR019207 This entry represents various hypothetical prokaryotic proteins of unknown function.
Probab=54.10 E-value=47 Score=27.46 Aligned_cols=38 Identities=13% Similarity=0.258 Sum_probs=30.5
Q ss_pred eeEeEEEEEEEEEECCCeeeEEEcC--cEEEEEECCEEee
Q 028279 80 IQLNLTLDLQILVKNRNRASFKHGS--GKSLLLYRGKQVG 117 (211)
Q Consensus 80 ~~ln~~~~~~v~v~NPN~~~i~y~~--~~~~v~Y~g~~lg 117 (211)
..+..+-+.++.++=|||+.+.+.. .+..++|+|..+-
T Consensus 35 qklq~~~~~~v~v~RPdklr~~~~gd~~~~~~~yDGkt~T 74 (214)
T PF09865_consen 35 QKLQFSSSGTVTVQRPDKLRIDRRGDGADREFYYDGKTFT 74 (214)
T ss_pred ceEEEEEEEEEEEeCCCeEEEEEEcCCcceEEEECCCEEE
Confidence 4556666889999999998888744 7789999998764
No 27
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=53.63 E-value=31 Score=25.61 Aligned_cols=24 Identities=13% Similarity=0.148 Sum_probs=18.9
Q ss_pred EEEEEEEEECCCeeeEEEcCcEEE
Q 028279 85 TLDLQILVKNRNRASFKHGSGKSL 108 (211)
Q Consensus 85 ~~~~~v~v~NPN~~~i~y~~~~~~ 108 (211)
++..++.+.||..+++..++...+
T Consensus 101 ~~~~~~~l~NPS~~ti~lG~v~~~ 124 (125)
T PF12505_consen 101 NLNATVTLPNPSPLTIDLGNVTLN 124 (125)
T ss_pred EEEEEEEEcCCCeEEEEeccEEEe
Confidence 457788899999888888877654
No 28
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=52.95 E-value=76 Score=22.12 Aligned_cols=52 Identities=12% Similarity=0.112 Sum_probs=29.3
Q ss_pred EEEEEEEEECCCeeeEEEcCcEEEEEECCEEeeeeEcCCCcccCCceEEEeeEEE
Q 028279 85 TLDLQILVKNRNRASFKHGSGKSLLLYRGKQVGVVDIDPGLIPARGSAVLPSRLT 139 (211)
Q Consensus 85 ~~~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~~p~f~q~~~~t~~~~~~~~ 139 (211)
+....++++|......+|.=....- .+..+ ...-+++...++.+..+.+.+.
T Consensus 21 ~~~~~v~l~N~s~~p~~f~v~~~~~--~~~~~-~v~~~~g~l~PG~~~~~~V~~~ 72 (102)
T PF14874_consen 21 TYSRTVTLTNTSSIPARFRVRQPES--LSSFF-SVEPPSGFLAPGESVELEVTFS 72 (102)
T ss_pred EEEEEEEEEECCCCCEEEEEEeCCc--CCCCE-EEECCCCEECCCCEEEEEEEEE
Confidence 4467889999985554443111000 11111 2334566788899888876665
No 29
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=51.74 E-value=1.2e+02 Score=23.91 Aligned_cols=16 Identities=13% Similarity=0.009 Sum_probs=9.7
Q ss_pred EEEcCcEEEEEECCEE
Q 028279 100 FKHGSGKSLLLYRGKQ 115 (211)
Q Consensus 100 i~y~~~~~~v~Y~g~~ 115 (211)
.+|=...+++-+++..
T Consensus 86 ~ryLkv~i~L~~~~~~ 101 (166)
T PRK12785 86 VQYLKLKVVLEVKDEK 101 (166)
T ss_pred ceEEEEEEEEEECCHH
Confidence 3666666666666543
No 30
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=51.64 E-value=40 Score=26.39 Aligned_cols=16 Identities=6% Similarity=-0.328 Sum_probs=9.1
Q ss_pred EEEcCcEEEEEECCEE
Q 028279 100 FKHGSGKSLLLYRGKQ 115 (211)
Q Consensus 100 i~y~~~~~~v~Y~g~~ 115 (211)
-+|=..++++-+.+..
T Consensus 78 ~rylkv~i~L~~~~~~ 93 (162)
T PRK07021 78 DRVLYVGLTLRLPDEA 93 (162)
T ss_pred ceEEEEEEEEEECCHH
Confidence 4555566666665543
No 31
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=51.20 E-value=7.4 Score=28.98 Aligned_cols=11 Identities=9% Similarity=0.217 Sum_probs=8.0
Q ss_pred heeEEeeeCCC
Q 028279 47 LALTVFKTKQP 57 (211)
Q Consensus 47 ~~~lv~rP~~P 57 (211)
++|+.+||+.=
T Consensus 15 i~yf~iRPQkK 25 (113)
T PRK06531 15 LIFFMQRQQKK 25 (113)
T ss_pred HHHheechHHH
Confidence 45678999764
No 32
>PF11322 DUF3124: Protein of unknown function (DUF3124); InterPro: IPR021471 This bacterial family of proteins has no known function.
Probab=50.18 E-value=52 Score=24.91 Aligned_cols=49 Identities=16% Similarity=0.175 Sum_probs=30.3
Q ss_pred EEEEEEEEEECCC-eeeEEEcCcEEEEEEC--CEEeeeeEcCCCcccCCceEEEe
Q 028279 84 LTLDLQILVKNRN-RASFKHGSGKSLLLYR--GKQVGVVDIDPGLIPARGSAVLP 135 (211)
Q Consensus 84 ~~~~~~v~v~NPN-~~~i~y~~~~~~v~Y~--g~~lg~~~~p~f~q~~~~t~~~~ 135 (211)
.+|++++++||.+ .-.+.-.+.+ ||+ |..+-.---.|.+.+|-++..+.
T Consensus 23 ~~Lt~tLSiRNtd~~~~i~i~~v~---Yydt~G~lvr~yl~~Pi~L~Pl~t~~~v 74 (125)
T PF11322_consen 23 FNLTATLSIRNTDPTDPIYITSVD---YYDTDGKLVRSYLDKPIYLKPLATTEFV 74 (125)
T ss_pred EeEEEEEEEEcCCCCCCEEEEEEE---EECCCCeEhHHhcCCCeEcCCCceEEEE
Confidence 3567889999998 5455443322 444 55555444456777777777763
No 33
>PHA03093 EEV glycoprotein; Provisional
Probab=49.55 E-value=6.5 Score=31.64 Aligned_cols=25 Identities=4% Similarity=-0.061 Sum_probs=13.6
Q ss_pred EECCCeeeEEEcCcEEEEEECCEEe
Q 028279 92 VKNRNRASFKHGSGKSLLLYRGKQV 116 (211)
Q Consensus 92 v~NPN~~~i~y~~~~~~v~Y~g~~l 116 (211)
.+|-+=-||.|++.-..+.++...+
T Consensus 96 ~~~~~C~GI~~~~~C~~~~~epkTf 120 (185)
T PHA03093 96 KHKESCKGIVYDGSCYIFHSEPKTF 120 (185)
T ss_pred cccCcCCCeecCCEeEEecCCCcCH
Confidence 3444434778876555555544433
No 34
>PRK10807 paraquat-inducible protein B; Provisional
Probab=47.71 E-value=22 Score=33.63 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=15.8
Q ss_pred heeEEeeeCCCeEEEEEEEEeeeec
Q 028279 47 LALTVFKTKQPITELQSAKIDGIAP 71 (211)
Q Consensus 47 ~~~lv~rP~~P~~~v~s~~v~~f~~ 71 (211)
+.|-.+.=+-|++++..-+-.++..
T Consensus 34 l~~~~~~~~G~~itl~~~~a~gl~~ 58 (547)
T PRK10807 34 ILFYHFSHQGPEVTLITTNAEGIEA 58 (547)
T ss_pred HHHHHHHcCCeEEEEEECCCCCcCc
Confidence 3445556677888887666665544
No 35
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=45.47 E-value=64 Score=22.95 Aligned_cols=56 Identities=7% Similarity=0.010 Sum_probs=34.4
Q ss_pred EEEEEEEEEECCCee---eEEEcCcEEEEEECCEEee--eeEcCCCcccCCceEEEeeEEE
Q 028279 84 LTLDLQILVKNRNRA---SFKHGSGKSLLLYRGKQVG--VVDIDPGLIPARGSAVLPSRLT 139 (211)
Q Consensus 84 ~~~~~~v~v~NPN~~---~i~y~~~~~~v~Y~g~~lg--~~~~p~f~q~~~~t~~~~~~~~ 139 (211)
-++.+.+++.||.-. .+...=....++|.|.... .-.......+|+++..+...+.
T Consensus 15 ~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~ 75 (107)
T PF00927_consen 15 QDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTIT 75 (107)
T ss_dssp SEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-
T ss_pred CCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEEE
Confidence 356788999999733 3433335566789998653 3334556678888888865543
No 36
>COG1589 FtsQ Cell division septal protein [Cell envelope biogenesis, outer membrane]
Probab=44.22 E-value=10 Score=32.27 Aligned_cols=25 Identities=8% Similarity=0.226 Sum_probs=20.5
Q ss_pred hheeEEeeeCCCeEEEEEEEEeeee
Q 028279 46 ILALTVFKTKQPITELQSAKIDGIA 70 (211)
Q Consensus 46 ~~~~lv~rP~~P~~~v~s~~v~~f~ 70 (211)
++.|....++.|.+.+..+.+++-.
T Consensus 47 ~~~~~~~~~~~~~~~i~~v~v~Gn~ 71 (269)
T COG1589 47 VVLWVLILLSLPYFPIRKVSVSGNN 71 (269)
T ss_pred HHHheehhhhcCCccceEEEEecCc
Confidence 3457888899999999999998743
No 37
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=44.19 E-value=11 Score=31.37 Aligned_cols=10 Identities=20% Similarity=-0.017 Sum_probs=4.0
Q ss_pred ceeeehhhHH
Q 028279 25 CCLIATGVAI 34 (211)
Q Consensus 25 ~c~~c~~~~~ 34 (211)
+..+.+=+++
T Consensus 11 K~N~iLNiaI 20 (217)
T PF07423_consen 11 KTNKILNIAI 20 (217)
T ss_pred hhhhhHHHHH
Confidence 3334443433
No 38
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=43.32 E-value=32 Score=24.37 Aligned_cols=25 Identities=8% Similarity=-0.004 Sum_probs=16.6
Q ss_pred eeehhhHHHHHHHHHHHHHhheeEE
Q 028279 27 LIATGVAILLLLAFFIIILILALTV 51 (211)
Q Consensus 27 ~~c~~~~~~~lv~l~~v~~~~~~lv 51 (211)
-.|..-+.+.+++++++.++++|+.
T Consensus 30 p~W~~p~m~~lmllGL~WiVvyYi~ 54 (87)
T PF06781_consen 30 PRWYAPLMLGLMLLGLLWIVVYYIS 54 (87)
T ss_pred CccHHHHHHHHHHHHHHHHhhhhcc
Confidence 3556566666677888777776655
No 39
>PF10907 DUF2749: Protein of unknown function (DUF2749); InterPro: IPR024475 This bacterial family of proteins represent the TrbJ and TrbK genes of the Ti plasmid conjugative transfer operon [].
Probab=40.82 E-value=29 Score=23.12 Aligned_cols=16 Identities=0% Similarity=-0.072 Sum_probs=11.4
Q ss_pred HHHHHHhheeEEeeeC
Q 028279 40 FFIIILILALTVFKTK 55 (211)
Q Consensus 40 l~~v~~~~~~lv~rP~ 55 (211)
+++.+.++.|++.+|+
T Consensus 13 vaa~a~~atwviVq~~ 28 (66)
T PF10907_consen 13 VAAAAGAATWVIVQPR 28 (66)
T ss_pred HHhhhceeEEEEECCC
Confidence 4444556778999998
No 40
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=38.43 E-value=34 Score=29.01 Aligned_cols=21 Identities=14% Similarity=0.268 Sum_probs=16.6
Q ss_pred cceeEeEEEEEEEEEECCC-ee
Q 028279 78 VDIQLNLTLDLQILVKNRN-RA 98 (211)
Q Consensus 78 ~~~~ln~~~~~~v~v~NPN-~~ 98 (211)
.+.++...=++++.+|||| .+
T Consensus 102 ~~l~~~S~rnvtvnarn~~g~v 123 (292)
T KOG3950|consen 102 SPLYLQSARNVTVNARNPNGKV 123 (292)
T ss_pred CceEEEeccCeeEEccCCCCce
Confidence 3566777778899999999 65
No 41
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=35.05 E-value=59 Score=25.31 Aligned_cols=32 Identities=16% Similarity=0.173 Sum_probs=26.7
Q ss_pred EEEEEEEEEECCCeeeEEEcCcEEEEEECCEE
Q 028279 84 LTLDLQILVKNRNRASFKHGSGKSLLLYRGKQ 115 (211)
Q Consensus 84 ~~~~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~ 115 (211)
...++++-++|.-+.++-+++.+++++-+|.-
T Consensus 68 g~~t~t~yiKNtG~~~~~fd~~sitVliDG~i 99 (154)
T COG3354 68 GPYTYTFYIKNTGSDSIAFDNTSITVLIDGNI 99 (154)
T ss_pred CceEEEEEEecCCCcccccCCCeEEEEEcCcE
Confidence 34466888999999999999999999998843
No 42
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=34.19 E-value=14 Score=30.71 Aligned_cols=18 Identities=39% Similarity=0.621 Sum_probs=9.7
Q ss_pred cccCC-cceeeehhhHHHH
Q 028279 19 RRRRR-RCCLIATGVAILL 36 (211)
Q Consensus 19 ~~~~~-r~c~~c~~~~~~~ 36 (211)
||||. +-+.+.+++++++
T Consensus 8 KrRK~N~iLNiaI~IV~lL 26 (217)
T PF07423_consen 8 KRRKTNKILNIAIGIVSLL 26 (217)
T ss_pred HhhhhhhhHHHHHHHHHHH
Confidence 44554 4444666666643
No 43
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=33.87 E-value=43 Score=24.01 Aligned_cols=14 Identities=7% Similarity=-0.064 Sum_probs=7.7
Q ss_pred HHHHHhheeEEeee
Q 028279 41 FIIILILALTVFKT 54 (211)
Q Consensus 41 ~~v~~~~~~lv~rP 54 (211)
+++.++.+|+++|=
T Consensus 81 ~lv~~l~w~f~~r~ 94 (96)
T PTZ00382 81 GLVGFLCWWFVCRG 94 (96)
T ss_pred HHHHHHhheeEEee
Confidence 33445556666663
No 44
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=33.00 E-value=19 Score=23.65 Aligned_cols=12 Identities=0% Similarity=0.163 Sum_probs=8.2
Q ss_pred hheeEEeeeCCC
Q 028279 46 ILALTVFKTKQP 57 (211)
Q Consensus 46 ~~~~lv~rP~~P 57 (211)
.++|.+|||+.=
T Consensus 24 avi~~ayr~~~K 35 (60)
T COG4736 24 AVIYFAYRPGKK 35 (60)
T ss_pred HHHHHHhcccch
Confidence 345788899753
No 45
>PF10830 DUF2553: Protein of unknown function (DUF2553); InterPro: IPR020140 This entry contains proteins with no known function.
Probab=31.81 E-value=90 Score=21.50 Aligned_cols=29 Identities=14% Similarity=0.195 Sum_probs=23.9
Q ss_pred CCeeeEEEcCcEEEEEECCEEeeeeEcCC
Q 028279 95 RNRASFKHGSGKSLLLYRGKQVGVVDIDP 123 (211)
Q Consensus 95 PN~~~i~y~~~~~~v~Y~g~~lg~~~~p~ 123 (211)
.|++.-+|.+....+|+++..||...+++
T Consensus 7 Td~V~gkf~ng~l~LY~~~e~IG~~~~~~ 35 (76)
T PF10830_consen 7 TDKVTGKFKNGGLELYHDNEMIGEIYMTE 35 (76)
T ss_pred ecceEEEecCCcEEEEeccceeeeEccCC
Confidence 35676778899999999999999977764
No 46
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=30.08 E-value=19 Score=31.06 Aligned_cols=13 Identities=23% Similarity=0.641 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 028279 33 AILLLLAFFIIIL 45 (211)
Q Consensus 33 ~~~~lv~l~~v~~ 45 (211)
+++++++++++++
T Consensus 264 aalvllil~vvli 276 (295)
T TIGR01478 264 AALVLIILTVVLI 276 (295)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444433
No 47
>PF09307 MHC2-interact: CLIP, MHC2 interacting; InterPro: IPR015386 This domain is found in MHC class II-associated invariant chain (Ii), and in class II invariant chain-associated peptide (CLIP), and is required for association with class II major histocompatibility complex (MHC II) in the MHC II processing pathway []. Ii plays a critical role in the assembly of the MHC, as well as in MHC II antigen processing by stabilising peptide-free class II alpha/beta heterodimers in a complex soon after their synthesis and directing transport of the complex from the endoplasmic reticulum to compartments where peptide loading of class II takes place []. In antigen-presenting cells (APCs), loading of MHC II molecules with peptides is regulated by Ii, which blocks MHC II antigen-binding sites in pre-endosomal compartments []. Several factors modulate the surface expression of MHC II molecules via post-Golgi mechanisms, including CLIP. The Invariant chain contains a single transmembrane domain. Ii first assembles into a trimer and then associates with three class II alpha/beta MHC heterodimers. Although the membrane-proximal region of the Ii luminal domain is structurally disordered, the C-terminal segment of the luminal domain is largely alpha-helical and contains a major interaction site for the Ii trimer []. More information about these proteins can be found at Protein of the Month: MHC [].; GO: 0042289 MHC class II protein binding, 0006886 intracellular protein transport, 0006955 immune response, 0019882 antigen processing and presentation, 0016020 membrane; PDB: 1A6A_C 3QXD_F 3QXA_F 3PDO_C 1MUJ_C 3PGD_F 3PGC_F.
Probab=29.75 E-value=18 Score=27.01 Aligned_cols=30 Identities=27% Similarity=0.273 Sum_probs=0.0
Q ss_pred ceeeehhhHHHHHHHHHHHHHhheeEEeeeC
Q 028279 25 CCLIATGVAILLLLAFFIIILILALTVFKTK 55 (211)
Q Consensus 25 ~c~~c~~~~~~~lv~l~~v~~~~~~lv~rP~ 55 (211)
++..+.++.+++.++++.-++ .+|++|.=+
T Consensus 30 ra~~vagltvLa~LLiAGQa~-TaYfv~~Qk 59 (114)
T PF09307_consen 30 RALKVAGLTVLACLLIAGQAV-TAYFVFQQK 59 (114)
T ss_dssp -------------------------------
T ss_pred chhHHHHHHHHHHHHHHhHHH-HHHHHHHhH
Confidence 333444444444444444444 356777654
No 48
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=29.53 E-value=23 Score=21.84 Aligned_cols=9 Identities=0% Similarity=0.401 Sum_probs=5.4
Q ss_pred eeEEeeeCC
Q 028279 48 ALTVFKTKQ 56 (211)
Q Consensus 48 ~~lv~rP~~ 56 (211)
++.+++|+.
T Consensus 26 ~~w~~~~~~ 34 (49)
T PF05545_consen 26 VIWAYRPRN 34 (49)
T ss_pred HHHHHcccc
Confidence 345568874
No 49
>PTZ00370 STEVOR; Provisional
Probab=29.31 E-value=21 Score=30.96 Aligned_cols=15 Identities=33% Similarity=0.738 Sum_probs=6.3
Q ss_pred hHHHHHHHHHHHHHh
Q 028279 32 VAILLLLAFFIIILI 46 (211)
Q Consensus 32 ~~~~~lv~l~~v~~~ 46 (211)
+++++++++++++++
T Consensus 259 iaalvllil~vvlii 273 (296)
T PTZ00370 259 IAALVLLILAVVLII 273 (296)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444333
No 50
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=28.99 E-value=21 Score=26.43 Aligned_cols=12 Identities=0% Similarity=-0.086 Sum_probs=8.3
Q ss_pred hheeEEeeeCCC
Q 028279 46 ILALTVFKTKQP 57 (211)
Q Consensus 46 ~~~~lv~rP~~P 57 (211)
+.+|+.+||+.=
T Consensus 16 i~yF~~iRPQkK 27 (109)
T PRK05886 16 GFMYFASRRQRK 27 (109)
T ss_pred HHHHHHccHHHH
Confidence 346677899764
No 51
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=27.56 E-value=45 Score=27.70 Aligned_cols=12 Identities=25% Similarity=0.312 Sum_probs=6.5
Q ss_pred eeEEeeeCCCeE
Q 028279 48 ALTVFKTKQPIT 59 (211)
Q Consensus 48 ~~lv~rP~~P~~ 59 (211)
+|-++|||+...
T Consensus 179 YfK~~K~K~~~~ 190 (218)
T PF14283_consen 179 YFKFYKPKQEEK 190 (218)
T ss_pred EEEEeccccccc
Confidence 344667766543
No 52
>PF12166 DUF3595: Protein of unknown function (DUF3595); InterPro: IPR021999 This family of proteins is functionally uncharacterised.This family of proteins is found in eukaryotes. Proteins in this family are typically between 578 and 2525 amino acids in length.
Probab=27.25 E-value=1.2e+02 Score=27.27 Aligned_cols=27 Identities=15% Similarity=0.140 Sum_probs=12.1
Q ss_pred cchhhhhhhhcccCCcceeeeh-hhHHH
Q 028279 9 EHNEEQVLLLRRRRRRCCLIAT-GVAIL 35 (211)
Q Consensus 9 ~~~~~~~~~~~~~~~r~c~~c~-~~~~~ 35 (211)
++.|..-++++..++....+|+ +++++
T Consensus 44 ~~~~~~~~~~~G~~~~~~~K~~~G~~~~ 71 (422)
T PF12166_consen 44 RESEKRYPRPRGQKKPKMVKYLMGGLLL 71 (422)
T ss_pred HHHHhccccccCccCcceEEeeehHHHH
Confidence 3444444444444444444444 44443
No 53
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=27.13 E-value=1.1e+02 Score=25.46 Aligned_cols=42 Identities=17% Similarity=0.318 Sum_probs=28.9
Q ss_pred EEEEECCCeeeEEEcCcEEEEEECCEEeeeeEcCCCcccCCceEEEe
Q 028279 89 QILVKNRNRASFKHGSGKSLLLYRGKQVGVVDIDPGLIPARGSAVLP 135 (211)
Q Consensus 89 ~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~~p~f~q~~~~t~~~~ 135 (211)
.++++||--+.+.+.+.++.. +|..++ ....++.++++..+.
T Consensus 166 ~l~v~Nptpy~vtl~~~~l~~--~~~~~~---~~~~mv~P~s~~~~~ 207 (235)
T COG3121 166 LLTVKNPTPYYVTLANLTLNV--GGRKLG---LNSGMVAPFSTRQFP 207 (235)
T ss_pred EEEEECCCCcEEEEEEEEEee--CceecC---CCcceECCCccceee
Confidence 689999997777777666665 777776 455556666665554
No 54
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=26.99 E-value=1.1e+02 Score=22.01 Aligned_cols=6 Identities=17% Similarity=0.157 Sum_probs=2.7
Q ss_pred heeEEe
Q 028279 47 LALTVF 52 (211)
Q Consensus 47 ~~~lv~ 52 (211)
++|+++
T Consensus 81 IyYFVI 86 (101)
T PF06024_consen 81 IYYFVI 86 (101)
T ss_pred heEEEE
Confidence 444444
No 55
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=26.97 E-value=57 Score=21.11 Aligned_cols=11 Identities=0% Similarity=0.223 Sum_probs=6.8
Q ss_pred HhheeEEeeeC
Q 028279 45 LILALTVFKTK 55 (211)
Q Consensus 45 ~~~~~lv~rP~ 55 (211)
++++|+.-||+
T Consensus 46 vv~vy~kTRP~ 56 (56)
T PF15012_consen 46 VVFVYLKTRPR 56 (56)
T ss_pred hheeEEeccCC
Confidence 33557777774
No 56
>PF09911 DUF2140: Uncharacterized protein conserved in bacteria (DUF2140); InterPro: IPR018672 This family of conserved hypothetical proteins has no known function.
Probab=26.76 E-value=81 Score=25.41 Aligned_cols=13 Identities=15% Similarity=0.692 Sum_probs=9.8
Q ss_pred HhheeEEeeeCCC
Q 028279 45 LILALTVFKTKQP 57 (211)
Q Consensus 45 ~~~~~lv~rP~~P 57 (211)
+++++.+++|+.|
T Consensus 19 ~~~~~~~~~~~~~ 31 (187)
T PF09911_consen 19 IVVFFRLFQPSEP 31 (187)
T ss_pred hheeeEEEccCCC
Confidence 3456788999976
No 57
>PF12321 DUF3634: Protein of unknown function (DUF3634); InterPro: IPR022090 This family of proteins is found in bacteria. Proteins in this family are typically between 103 and 114 amino acids in length.
Probab=26.50 E-value=30 Score=25.53 Aligned_cols=16 Identities=25% Similarity=0.542 Sum_probs=8.5
Q ss_pred hheeEEeeeC--CCeEEE
Q 028279 46 ILALTVFKTK--QPITEL 61 (211)
Q Consensus 46 ~~~~lv~rP~--~P~~~v 61 (211)
+++||++-=+ .|.|.+
T Consensus 11 li~~Lv~~~r~~~~vf~i 28 (108)
T PF12321_consen 11 LIFWLVFVDRRGLPVFEI 28 (108)
T ss_pred HHHHHHHccccCceEEEE
Confidence 3456665444 366654
No 58
>PTZ00116 signal peptidase; Provisional
Probab=26.18 E-value=2e+02 Score=23.25 Aligned_cols=19 Identities=11% Similarity=0.172 Sum_probs=10.6
Q ss_pred eCCCeEEEEEEEEeeeecc
Q 028279 54 TKQPITELQSAKIDGIAPR 72 (211)
Q Consensus 54 P~~P~~~v~s~~v~~f~~~ 72 (211)
+..|...++=-++.+|.+.
T Consensus 36 ~~~~~~~i~v~~V~~~~~~ 54 (185)
T PTZ00116 36 EKEMSTNIKVKSVKRLVYN 54 (185)
T ss_pred CCCceeeEEEeeccccccc
Confidence 4456566654455667643
No 59
>PF15018 InaF-motif: TRP-interacting helix
Probab=26.09 E-value=1.2e+02 Score=17.95 Aligned_cols=29 Identities=17% Similarity=0.170 Sum_probs=14.7
Q ss_pred ceeeehhhHH-HHHHHHHHHHHhheeEEee
Q 028279 25 CCLIATGVAI-LLLLAFFIIILILALTVFK 53 (211)
Q Consensus 25 ~c~~c~~~~~-~~lv~l~~v~~~~~~lv~r 53 (211)
++.+++-.++ ++.+-++++.+.++|..++
T Consensus 3 k~~R~~tV~~Yl~~VSl~Ai~LsiYY~f~W 32 (38)
T PF15018_consen 3 KWVRVLTVVAYLFSVSLAAIVLSIYYIFFW 32 (38)
T ss_pred eEEeeHHHHHHHHHHHHHHHHHHHHHheee
Confidence 4455453322 2233355555667777776
No 60
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=25.57 E-value=1.6e+02 Score=19.63 Aligned_cols=27 Identities=19% Similarity=0.346 Sum_probs=19.3
Q ss_pred EECCCeeeEEEcC-cEEEEEECCEEeee
Q 028279 92 VKNRNRASFKHGS-GKSLLLYRGKQVGV 118 (211)
Q Consensus 92 v~NPN~~~i~y~~-~~~~v~Y~g~~lg~ 118 (211)
+...+.+.+..++ ..+.+.|+|+.++.
T Consensus 34 ~~~~~~~~i~iGna~~v~v~~nG~~~~~ 61 (77)
T PF13464_consen 34 FEGKEPFRIRIGNAGAVEVTVNGKPVDL 61 (77)
T ss_pred EeCCCCEEEEEeCCCcEEEEECCEECCC
Confidence 3555567777766 66888888888765
No 61
>PF14055 NVEALA: NVEALA protein
Probab=25.56 E-value=36 Score=22.43 Aligned_cols=26 Identities=8% Similarity=0.275 Sum_probs=18.0
Q ss_pred HHhheeEEeeeCCCeEEEEEEEEeee
Q 028279 44 ILILALTVFKTKQPITELQSAKIDGI 69 (211)
Q Consensus 44 ~~~~~~lv~rP~~P~~~v~s~~v~~f 69 (211)
++++.|-+++.++-+..+.++.+.|.
T Consensus 15 ~~~ag~~~~~~~~~~~~lsdL~L~NV 40 (65)
T PF14055_consen 15 AAVAGYNVYQSQNKEVNLSDLALANV 40 (65)
T ss_pred hhheeeeEEEeccCccccchHHHHhH
Confidence 44466788888776667777776664
No 62
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=25.37 E-value=3e+02 Score=20.77 Aligned_cols=36 Identities=14% Similarity=0.010 Sum_probs=27.5
Q ss_pred EEEEEEEEECCCeeeEEEcCcEEEEEECCEEeeeeE
Q 028279 85 TLDLQILVKNRNRASFKHGSGKSLLLYRGKQVGVVD 120 (211)
Q Consensus 85 ~~~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~ 120 (211)
++.+..+++|-.+..+..=..+++++.++...++..
T Consensus 63 ~~~v~g~V~N~g~~~i~~c~i~~~l~~~~~~~~n~~ 98 (149)
T PF09624_consen 63 SFYVDGTVTNTGKFTIKKCKITVKLYNDKQVSGNKF 98 (149)
T ss_pred EEEEEEEEEECCCCEeeEEEEEEEEEeCCCccCchh
Confidence 456778999999888888888999888765554433
No 63
>PF03923 Lipoprotein_16: Uncharacterized lipoprotein; InterPro: IPR005619 The function of this presumed lipoprotein is unknown. The family includes Escherichia coli YajG P36671 from SWISSPROT.
Probab=25.24 E-value=3.2e+02 Score=21.04 Aligned_cols=50 Identities=8% Similarity=0.105 Sum_probs=30.0
Q ss_pred eCCCeEEEEEEEEeeeecccCCCCcceeEeEEEEEEEEEECCC-eeeEEEc
Q 028279 54 TKQPITELQSAKIDGIAPRVTFPAVDIQLNLTLDLQILVKNRN-RASFKHG 103 (211)
Q Consensus 54 P~~P~~~v~s~~v~~f~~~~~~p~~~~~ln~~~~~~v~v~NPN-~~~i~y~ 103 (211)
+..+.-.--.+.+..|....+........+..+.+.+.+.|+| .+.=.|.
T Consensus 67 i~~~~~~~v~v~I~~l~~~v~~~~~~~~~~~~i~i~v~~~~~~~~~tK~y~ 117 (159)
T PF03923_consen 67 IGPNANNNVTVQINELYADVKQGSLRYNATAKIQIEVTAQNGNGTFTKNYS 117 (159)
T ss_pred eCCCCceEEEEEehheEEEeccceEEEEEEEEEEEEEEEEcCCCEEEEEEE
Confidence 3334334445667777665432233446777888899999999 4544443
No 64
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=25.23 E-value=2.2e+02 Score=19.14 Aligned_cols=51 Identities=22% Similarity=0.247 Sum_probs=30.9
Q ss_pred EEEEEEEECCCeeeEEEcCcEEEEEECCEEeeeeEcCCCcccCCceEEEeeEEEE
Q 028279 86 LDLQILVKNRNRASFKHGSGKSLLLYRGKQVGVVDIDPGLIPARGSAVLPSRLTL 140 (211)
Q Consensus 86 ~~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~~p~f~q~~~~t~~~~~~~~~ 140 (211)
+.++++++|.-... -.+..+.++.+|..++...+++ .+++++..+...+..
T Consensus 21 ~~i~~~V~N~G~~~--~~~~~v~~~~~~~~~~~~~i~~--L~~g~~~~v~~~~~~ 71 (101)
T PF07705_consen 21 VTITVTVKNNGTAD--AENVTVRLYLDGNSVSTVTIPS--LAPGESETVTFTWTP 71 (101)
T ss_dssp EEEEEEEEE-SSS---BEEEEEEEEETTEEEEEEEESE--B-TTEEEEEEEEEE-
T ss_pred EEEEEEEEECCCCC--CCCEEEEEEECCceeccEEECC--cCCCcEEEEEEEEEe
Confidence 46677889975332 2346677888899888777744 345566666544443
No 65
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=24.67 E-value=60 Score=22.31 Aligned_cols=6 Identities=17% Similarity=0.152 Sum_probs=2.1
Q ss_pred CCcchh
Q 028279 7 MTEHNE 12 (211)
Q Consensus 7 ~~~~~~ 12 (211)
|+.+||
T Consensus 1 M~LSe~ 6 (82)
T PF11239_consen 1 MPLSEH 6 (82)
T ss_pred CCCCHH
Confidence 333333
No 66
>PRK10775 cell division protein FtsQ; Provisional
Probab=24.60 E-value=52 Score=28.18 Aligned_cols=18 Identities=0% Similarity=-0.049 Sum_probs=13.3
Q ss_pred EEEEEEECCCeeeEEEcC
Q 028279 87 DLQILVKNRNRASFKHGS 104 (211)
Q Consensus 87 ~~~v~v~NPN~~~i~y~~ 104 (211)
+++|+-+=||.+.|+-.+
T Consensus 108 ~a~VrR~wPdtL~V~V~E 125 (276)
T PRK10775 108 QVSVRKQWPDELKIHLVE 125 (276)
T ss_pred EEEEEEeCCCcEEEEEEE
Confidence 567888889977776544
No 67
>PF10969 DUF2771: Protein of unknown function (DUF2771); InterPro: IPR024495 This bacterial family of proteins has no known function.
Probab=24.16 E-value=66 Score=25.34 Aligned_cols=9 Identities=11% Similarity=0.143 Sum_probs=5.7
Q ss_pred eCCCeEEEE
Q 028279 54 TKQPITELQ 62 (211)
Q Consensus 54 P~~P~~~v~ 62 (211)
|++|++++.
T Consensus 32 p~~p~It~~ 40 (161)
T PF10969_consen 32 PQDPEITAY 40 (161)
T ss_pred CCCcEEEEE
Confidence 556677665
No 68
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=23.51 E-value=38 Score=24.46 Aligned_cols=14 Identities=7% Similarity=0.325 Sum_probs=9.2
Q ss_pred HHhheeEEeeeCCC
Q 028279 44 ILILALTVFKTKQP 57 (211)
Q Consensus 44 ~~~~~~lv~rP~~P 57 (211)
.++.+|+++||+.=
T Consensus 19 ~~ifyFli~RPQrK 32 (97)
T COG1862 19 FAIFYFLIIRPQRK 32 (97)
T ss_pred HHHHHHhhcCHHHH
Confidence 34456669999764
No 69
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=23.49 E-value=53 Score=25.76 Aligned_cols=30 Identities=13% Similarity=0.091 Sum_probs=16.0
Q ss_pred EEEEECCCee-eEEEcC--cEEEEEEC-CEEeee
Q 028279 89 QILVKNRNRA-SFKHGS--GKSLLLYR-GKQVGV 118 (211)
Q Consensus 89 ~v~v~NPN~~-~i~y~~--~~~~v~Y~-g~~lg~ 118 (211)
.++++++|++ .++|.- -++.=-|+ +.++|.
T Consensus 89 vvtay~~n~~~~~w~~l~Gk~~~~~y~s~splg~ 122 (154)
T PF04478_consen 89 VVTAYRSNKLTKWWYSLLGKKISDKYESNSPLGS 122 (154)
T ss_pred EEEEEcCchHHHHHHHHhCCccccccccCCCCCC
Confidence 4789999965 444421 11222343 456665
No 70
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=23.44 E-value=3.3e+02 Score=20.55 Aligned_cols=67 Identities=16% Similarity=0.120 Sum_probs=44.9
Q ss_pred CCeEEEEEEEEeeeecccCCCCcceeEeEEEEEEEEEECCCeeeEEEcCcEEEEEECC--EEeeeeEcCCCcccCCceEE
Q 028279 56 QPITELQSAKIDGIAPRVTFPAVDIQLNLTLDLQILVKNRNRASFKHGSGKSLLLYRG--KQVGVVDIDPGLIPARGSAV 133 (211)
Q Consensus 56 ~P~~~v~s~~v~~f~~~~~~p~~~~~ln~~~~~~v~v~NPN~~~i~y~~~~~~v~Y~g--~~lg~~~~p~f~q~~~~t~~ 133 (211)
.|.+.+.++.....+. .-.+.+.++||.-.-+.=-.+++.|+..| ..+.......+...|.+.-.
T Consensus 27 ~p~L~l~~v~~~~~n~-------------~~~i~~~l~N~~~~~l~~~~v~a~V~~~~~~k~~~~~~~~~~~mAPNS~f~ 93 (140)
T PF11797_consen 27 PPKLKLGKVKPGQING-------------RNVIQANLQNPQPAILKKLTVDAKVTKKGSKKVLYTFKKENMQMAPNSNFN 93 (140)
T ss_pred CcccEEeeeeeeEECC-------------eeEEEEEEECCCchhhcCcEEEEEEEECCCCeEEEEeeccCCEECCCCeEE
Confidence 4566666655544332 33567788999854444345677788876 47888888888888888866
Q ss_pred Ee
Q 028279 134 LP 135 (211)
Q Consensus 134 ~~ 135 (211)
+.
T Consensus 94 ~~ 95 (140)
T PF11797_consen 94 FP 95 (140)
T ss_pred eE
Confidence 63
No 71
>COG3008 PqiB Paraquat-inducible protein B [General function prediction only]
Probab=23.31 E-value=1.2e+02 Score=28.85 Aligned_cols=57 Identities=21% Similarity=0.206 Sum_probs=29.5
Q ss_pred cchhhhhhhhcccCCcceeeehhhHHHHHHHHHHHHHhheeEEeeeCCCeEEEEEEEEeeee
Q 028279 9 EHNEEQVLLLRRRRRRCCLIATGVAILLLLAFFIIILILALTVFKTKQPITELQSAKIDGIA 70 (211)
Q Consensus 9 ~~~~~~~~~~~~~~~r~c~~c~~~~~~~lv~l~~v~~~~~~lv~rP~~P~~~v~s~~v~~f~ 70 (211)
+.+++..+.+.|+++|-..+|+ +=++.+++.+.++|-.++=+-|++++.=.+=+++.
T Consensus 4 ~~~~~~~~a~ir~~r~~SpiWl-----lPivAl~igawL~~~~~~~~G~~Itl~f~saeGIe 60 (553)
T COG3008 4 ETPPSNGPAQIRKKRRISPIWL-----LPIVALLIGAWLLFQHVQDRGPEITLTFESAEGIE 60 (553)
T ss_pred CCCCCCCCccceeecCCCchHH-----HHHHHHHHHHHHHHHHHHhcCCeEEEEecCccccc
Confidence 3444455555555555222222 22222333344556777888899988755444443
No 72
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.24 E-value=72 Score=24.98 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=14.7
Q ss_pred ceeeehhhHHHHHHHHHHHHHhheeEEeeeC
Q 028279 25 CCLIATGVAILLLLAFFIIILILALTVFKTK 55 (211)
Q Consensus 25 ~c~~c~~~~~~~lv~l~~v~~~~~~lv~rP~ 55 (211)
+.++++.+++.+++.+.++++..+|...+|.
T Consensus 4 k~~~~i~ii~viflai~~s~~~~~~~s~~P~ 34 (161)
T COG5353 4 KHLIIIIIILVIFLAIILSIALFFWKSMKPY 34 (161)
T ss_pred eEeeeehhHHHHHHHHHHHHHHHHhHhcCcc
Confidence 4556665443332222233344566666663
No 73
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=22.52 E-value=77 Score=25.45 Aligned_cols=9 Identities=11% Similarity=0.361 Sum_probs=3.8
Q ss_pred eEEeeeCCC
Q 028279 49 LTVFKTKQP 57 (211)
Q Consensus 49 ~lv~rP~~P 57 (211)
|+++....+
T Consensus 39 ~~~~~~~~~ 47 (182)
T PRK08455 39 MLLMGSKEE 47 (182)
T ss_pred HHHhcCCCc
Confidence 344444443
No 74
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=22.43 E-value=3.2e+02 Score=20.03 Aligned_cols=59 Identities=14% Similarity=0.317 Sum_probs=33.7
Q ss_pred EeeeeEcCCCcccCCceEE-EeeEEEEeecccccchHHHHhhh-cCCeEEEEEEEEEEEEEEEeeE
Q 028279 115 QVGVVDIDPGLIPARGSAV-LPSRLTLQVDEVASNLSALIRDV-LDGELVMETHTRIPGRVNLLGI 178 (211)
Q Consensus 115 ~lg~~~~p~f~q~~~~t~~-~~~~~~~~~~~~~~~~~~l~~d~-~~g~v~l~~~~~v~~rv~v~~~ 178 (211)
++|...+|+......++.. ++.++.+.... ...++.+++ .+.++.+.++++. +++++++
T Consensus 2 ~f~~~~lP~~~~~~~~~~~~~~~~l~i~d~~---~f~~f~~~~~~~~~~~l~l~g~~--~~~~g~l 62 (125)
T PF12505_consen 2 PFATLDLPQIKIKGNGTISIIDQTLTITDQD---AFTQFVTALLFNEEVTLTLRGKT--DTHLGGL 62 (125)
T ss_pred ceEEEECCCEEecCCceEEEeeeeEEecCHH---HHHHHHHHHHhCCcEEEEEEEee--eEEEccE
Confidence 5788999999883333322 33232222111 234566666 3567888877763 6776665
No 75
>PF06835 LptC: Lipopolysaccharide-assembly, LptC-related; InterPro: IPR010664 This family consists of several related groups of proteins one of which is the LptC family. LptC is involved in lipopolysaccharide-assembly on the outer membrane of Gram-negative organisms. The cell envelope of Gram-negative bacteria consists of an inner (IM) and an outer membrane (OM) separated by an aqueous compartment, the periplasm, which contains the peptidoglycan layer. The OM is an asymmetric bilayer, with phospholipids in the inner leaflet and lipopolysaccharides (LPS) facing outward [, ]. The OM is an effective permeability barrier that protects the cells from toxic compounds, such as antibiotics and detergents, thus allowing bacteria to inhabit several different and often hostile environments. LPS is responsible for the permeability properties of the OM. LPS consists of the lipid A moiety (a glucosamine-based phospholipid) linked to the short core oligosaccharide and the distal O-antigen polysaccharide chain. The core oligosaccharide can be further divided into an inner core, composed of 3-deoxy-D-mannooctulosanate (KDO) and heptose, and an outer core, which has a somewhat variable structure. LPS is essential in most Gram-negative bacteria, with the notable exception of Neisseria meningitidis. The biogenesis of the OM implies that the individual components are transported from the site of synthesis to their final destination outside the IM by crossing both hydrophilic and hydrophobic compartments. The machinery and the energy source that drive this process are not yet fully understood. The lipid A-core moiety and the O-antigen repeat units are synthesized at the cytoplasmic face of the IM and are separately exported via two independent transport systems, namely, the O-antigen transporter Wzx (RfbX) [, ] and the ATP binding cassette (ABC) transporter MsbA that flips the lipid A-core moiety from the inner leaflet to the outer leaflet of the IM [, , ]. O-antigen repeat units are then polymerised in the periplasm by the Wzy polymerase and ligated to the lipid A-core moiety by the WaaL ligase [see, , ]. The LPS transport machinery is composed of LptA, LptB, LptC, LptD, LptE. This supported by the fact, that depletion of any of one of these proteins blocks the LPS assembly pathway and results in very similar OM biogenesis defects. Moreover, the location of at least one of these five proteins in every cellular compartment suggests a model for how the LPS assembly pathway is organised and ordered in space []. Required for the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [].; PDB: 3MY2_A.
Probab=22.24 E-value=3.5e+02 Score=20.35 Aligned_cols=45 Identities=11% Similarity=0.060 Sum_probs=18.8
Q ss_pred EeEEEEEEEEEECCCeeeEEEcCcEEEEEECCEEeeeeEcCCCcc
Q 028279 82 LNLTLDLQILVKNRNRASFKHGSGKSLLLYRGKQVGVVDIDPGLI 126 (211)
Q Consensus 82 ln~~~~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~~p~f~q 126 (211)
+...+...=.-+++|.-.++.....+.++-++..--....+.+..
T Consensus 51 ~~~~l~A~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~i~A~~g~~ 95 (176)
T PF06835_consen 51 LQWKLTAERAEHYPNSDTVELEDPSLIIYDDDGPEWTITADRGTY 95 (176)
T ss_dssp --EEEE-SSEEEETTTTEEEEES-EEEEE-TT-EEEEEE-SEEEE
T ss_pred EEEEEEEeEEEEecCCCcEEEeccEEEEEeCCCceEEEEeCEEEE
Confidence 444444444455665333555666666555554434444443333
No 76
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=22.00 E-value=2.2e+02 Score=22.34 Aligned_cols=26 Identities=4% Similarity=-0.075 Sum_probs=11.3
Q ss_pred eeeEEEcCcEEEEEECCE-EeeeeEcC
Q 028279 97 RASFKHGSGKSLLLYRGK-QVGVVDID 122 (211)
Q Consensus 97 ~~~i~y~~~~~~v~Y~g~-~lg~~~~p 122 (211)
.+.+.|..+-=+++=.|+ -++.+.+.
T Consensus 84 ~v~V~Y~GilPDlFrEGqgVVaeG~~~ 110 (155)
T PRK13159 84 ATQVEYTGILPDLFRDNQSVIANGRMQ 110 (155)
T ss_pred EEEEEEccCCCccccCCCeEEEEEEEc
Confidence 344445444334333343 24455543
No 77
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=21.94 E-value=60 Score=22.63 Aligned_cols=14 Identities=14% Similarity=0.448 Sum_probs=8.7
Q ss_pred HHhheeEEeeeCCC
Q 028279 44 ILILALTVFKTKQP 57 (211)
Q Consensus 44 ~~~~~~lv~rP~~P 57 (211)
+++.+++..||+.=
T Consensus 13 ~~i~yf~~~rpqkK 26 (84)
T TIGR00739 13 FLIFYFLIIRPQRK 26 (84)
T ss_pred HHHHHHheechHHH
Confidence 33456677888753
No 78
>COG3736 VirB8 Type IV secretory pathway, component VirB8 [Intracellular trafficking and secretion]
Probab=21.77 E-value=51 Score=27.82 Aligned_cols=34 Identities=21% Similarity=0.197 Sum_probs=18.3
Q ss_pred ceeeehhhHHHHHHHHHHHHHhheeEEeeeCCCeE
Q 028279 25 CCLIATGVAILLLLAFFIIILILALTVFKTKQPIT 59 (211)
Q Consensus 25 ~c~~c~~~~~~~lv~l~~v~~~~~~lv~rP~~P~~ 59 (211)
+.+.|.|+++.++.+++++ .+++.+=++-+.|-+
T Consensus 41 ~~~~~va~~~~~l~v~~~~-~Ia~llPLK~~epy~ 74 (239)
T COG3736 41 RLAWRVAILFTLLAVAAVI-AIAILLPLKKTEPYV 74 (239)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHhhccccccccEE
Confidence 4444455554444433333 334457778888855
No 79
>PRK02251 putative septation inhibitor protein; Reviewed
Probab=21.25 E-value=1.1e+02 Score=21.74 Aligned_cols=29 Identities=14% Similarity=0.049 Sum_probs=18.9
Q ss_pred eehhhHHHHHHHHHHHHHhheeEEeeeCCC
Q 028279 28 IATGVAILLLLAFFIIILILALTVFKTKQP 57 (211)
Q Consensus 28 ~c~~~~~~~lv~l~~v~~~~~~lv~rP~~P 57 (211)
.|...+++.+.+++++.++++|+. .+..|
T Consensus 32 ~W~~~~m~~lm~~Gl~WlvvyYl~-~~~~P 60 (87)
T PRK02251 32 RWFVPLFVALMIIGLIWLVVYYLS-NGSLP 60 (87)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhh-CCCcC
Confidence 456556666677888877777663 45555
No 80
>smart00084 NMU Neuromedin U. Neuromedin U (NmU) is a vertebrate peptide which stimulates uterine smooth muscle contraction and causes selective vasoconstriction. Like most other active peptides, it is proteolytically processed from a larger precursor protein. The mature peptides are 8 (NmU-8) to 25 (NmU-25) residues long and C- terminally amidated. The sequence of the C-terminal extremity of NmU is extremely well conserved in mammals, birds and amphibians.
Probab=20.88 E-value=58 Score=17.54 Aligned_cols=8 Identities=13% Similarity=0.534 Sum_probs=5.7
Q ss_pred eEEeeeCC
Q 028279 49 LTVFKTKQ 56 (211)
Q Consensus 49 ~lv~rP~~ 56 (211)
|++|||+.
T Consensus 18 yFLfRPRN 25 (26)
T smart00084 18 YFLFRPRN 25 (26)
T ss_pred eEEeccCC
Confidence 67778874
No 81
>PF04573 SPC22: Signal peptidase subunit; InterPro: IPR007653 Translocation of polypeptide chains across the endoplasmic reticulum membrane is triggered by signal sequences. During translocation of the nascent chain through the membrane, the signal sequence of most secretory and membrane proteins is cleaved off. Cleavage occurs by the signal peptidase complex (SPC), which consists of four subunits in yeast and five in mammals. This family is is described as similar to microsomal signal peptidase 23 kDa subunit. Found in eukaryotes [, ].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=20.87 E-value=2.1e+02 Score=22.88 Aligned_cols=11 Identities=18% Similarity=0.495 Sum_probs=6.4
Q ss_pred eeeCCCeEEEE
Q 028279 52 FKTKQPITELQ 62 (211)
Q Consensus 52 ~rP~~P~~~v~ 62 (211)
+.|..|..++.
T Consensus 32 ~~~~~~~~~i~ 42 (175)
T PF04573_consen 32 FHPPSPSVSIS 42 (175)
T ss_pred ccCCCCceEEE
Confidence 56666665543
No 82
>PF13179 DUF4006: Family of unknown function (DUF4006)
Probab=20.20 E-value=1.1e+02 Score=20.44 Aligned_cols=19 Identities=21% Similarity=0.387 Sum_probs=9.9
Q ss_pred hhHHHHHHHHHHHHHhhee
Q 028279 31 GVAILLLLAFFIIILILAL 49 (211)
Q Consensus 31 ~~~~~~lv~l~~v~~~~~~ 49 (211)
+.+++++++|.+++++.+|
T Consensus 15 G~LIAvvLLLsIl~~lt~~ 33 (66)
T PF13179_consen 15 GMLIAVVLLLSILAFLTYW 33 (66)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4445555556655544443
Done!